BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038429
(258 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2
SV=1
Length = 738
Score = 267 bits (682), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 136/260 (52%), Positives = 178/260 (68%), Gaps = 11/260 (4%)
Query: 9 ISIPRHPN---PTTLTVNNGHQRHPHFL---TNQKQLKRIHAQMLSTDFFFDPYSASKLF 62
+S+PRHPN P T NN RH + + +QLK+ H M+ T F DPYSASKLF
Sbjct: 10 LSLPRHPNFSNPNQPTTNNERSRHISLIERCVSLRQLKQTHGHMIRTGTFSDPYSASKLF 69
Query: 63 TPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFP 122
ALS+F+SLEYARK+FD+IP+PN + WNTLIRAY+S +P+ S FL +V S +P
Sbjct: 70 AMAALSSFASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYP 129
Query: 123 NEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVF 177
N++T PF+IKAAA +GQ++HGM D+ ++NSLIH Y CGDL A VF
Sbjct: 130 NKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVF 189
Query: 178 VMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLE 237
I +KDVVSWNSMI+GFV+ G +KA+EL+++ME E+VK VTMV VLSACAK R+LE
Sbjct: 190 TTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLE 249
Query: 238 FGIWVSSHIEKNGIKMDLTF 257
FG V S+IE+N + ++LT
Sbjct: 250 FGRQVCSYIEENRVNVNLTL 269
Score = 103 bits (256), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 90/163 (55%), Gaps = 5/163 (3%)
Query: 74 EYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKA 133
E AR++ + +PQ ++ WN LI AY + +P ++ ++F +L N+ TL + A
Sbjct: 315 EAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSA 374
Query: 134 AARPVQFRVGQAIHGMFEDDLV-----ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSW 188
A+ +G+ IH + + ++++LIH Y+ CGDL + VF + K+DV W
Sbjct: 375 CAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVW 434
Query: 189 NSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
++MI G G +A++++ +M+ NVKP+ VT V AC+
Sbjct: 435 SAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACS 477
Score = 85.1 bits (209), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/252 (23%), Positives = 119/252 (47%), Gaps = 40/252 (15%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
+ +H + + D + A+ L C S L+ A K+F I + ++ +WN++I +
Sbjct: 151 QSLHGMAVKSAVGSDVFVANSLIH-CYFSC-GDLDSACKVFTTIKEKDVVSWNSMINGFV 208
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDD-----L 154
P ++ +F ++ + + T+ V+ A A+ G+ + E++ L
Sbjct: 209 QKGSPDKALELFKKM-ESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNL 267
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIE-------- 206
++N+++ Y CG + A +F + +KD V+W +M+ G+ +E A E
Sbjct: 268 TLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQK 327
Query: 207 -----------------------LYREMEVE-NVKPDEVTMVVVLSACAKKRDLEFGIWV 242
++ E++++ N+K +++T+V LSACA+ LE G W+
Sbjct: 328 DIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWI 387
Query: 243 SSHIEKNGIKMD 254
S+I+K+GI+M+
Sbjct: 388 HSYIKKHGIRMN 399
>sp|Q9SJG6|PP200_ARATH Pentatricopeptide repeat-containing protein At2g42920,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-E75 PE=2
SV=1
Length = 559
Score = 155 bits (392), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 94/288 (32%), Positives = 147/288 (51%), Gaps = 38/288 (13%)
Query: 4 LSTPVISIPRHPNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFT 63
LS +++P P+ +L+ N + + ++LK+IHA ++ T D +AS++
Sbjct: 6 LSFSGVTVPAMPSSGSLSGNTYLRLIDTQCSTMRELKQIHASLIKTGLISDTVTASRVLA 65
Query: 64 PCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYF-P 122
C S S + YA +F +I N + WNT+IR +S S P + IF+ ++ +SP P
Sbjct: 66 FCCASP-SDMNYAYLVFTRINHKNPFVWNTIIRGFSRSSFPEMAISIFIDMLCSSPSVKP 124
Query: 123 NEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVF 177
T P V KA R Q R G+ +HGM EDD I N+++H Y CG L A+ +F
Sbjct: 125 QRLTYPSVFKAYGRLGQARDGRQLHGMVIKEGLEDDSFIRNTMLHMYVTCGCLIEAWRIF 184
Query: 178 VMIGKKDVVSWN-------------------------------SMISGFVEGGFFEKAIE 206
+ + DVV+WN SMISGFV G F+ A++
Sbjct: 185 LGMIGFDVVAWNSMIMGFAKCGLIDQAQNLFDEMPQRNGVSWNSMISGFVRNGRFKDALD 244
Query: 207 LYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
++REM+ ++VKPD TMV +L+ACA E G W+ +I +N +++
Sbjct: 245 MFREMQEKDVKPDGFTMVSLLNACAYLGASEQGRWIHEYIVRNRFELN 292
Score = 92.4 bits (228), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 89/175 (50%), Gaps = 11/175 (6%)
Query: 62 FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYF 121
F C L ++ A+ +FD++PQ N +WN++I + + + +F ++
Sbjct: 202 FAKCGL-----IDQAQNLFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFREM-QEKDVK 255
Query: 122 PNEFTLPFVIKAAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCV 176
P+ FT+ ++ A A G+ IH FE + ++ +LI Y CG + V
Sbjct: 256 PDGFTMVSLLNACAYLGASEQGRWIHEYIVRNRFELNSIVVTALIDMYCKCGCIEEGLNV 315
Query: 177 FVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
F KK + WNSMI G GF E+A++L+ E+E ++PD V+ + VL+ACA
Sbjct: 316 FECAPKKQLSCWNSMILGLANNGFEERAMDLFSELERSGLEPDSVSFIGVLTACA 370
>sp|Q9SJZ3|PP169_ARATH Pentatricopeptide repeat-containing protein At2g22410,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2
SV=1
Length = 681
Score = 152 bits (384), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 82/223 (36%), Positives = 131/223 (58%), Gaps = 7/223 (3%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
LK+I AQM+ DP+++S+L CALS L+Y+ K+ I PN+++WN IR
Sbjct: 68 HLKQIQAQMIINGLILDPFASSRLIAFCALSESRYLDYSVKILKGIENPNIFSWNVTIRG 127
Query: 98 YSSSDEPIQSFMIFLQLVYNS--PYFPNEFTLPFVIKAAARPVQFRVGQAIHG---MFED 152
+S S+ P +SF+++ Q++ + P+ FT P + K A +G I G
Sbjct: 128 FSESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADLRLSSLGHMILGHVLKLRL 187
Query: 153 DLV--ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
+LV + N+ IH +A CGD+ A VF +D+VSWN +I+G+ + G EKAI +Y+
Sbjct: 188 ELVSHVHNASIHMFASCGDMENARKVFDESPVRDLVSWNCLINGYKKIGEAEKAIYVYKL 247
Query: 211 MEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKM 253
ME E VKPD+VTM+ ++S+C+ DL G ++++NG++M
Sbjct: 248 MESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRM 290
Score = 102 bits (253), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 120/252 (47%), Gaps = 43/252 (17%)
Query: 43 HAQMLSTDFFFDPYSAS-KLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS 101
H L + ++AS +F C +E ARK+FD+ P +L +WN LI Y
Sbjct: 181 HVLKLRLELVSHVHNASIHMFASCG-----DMENARKVFDESPVRDLVSWNCLINGYKKI 235
Query: 102 DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQ----------------- 144
E ++ ++ +L+ + P++ T+ ++ + + G+
Sbjct: 236 GEAEKAIYVY-KLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMTIPL 294
Query: 145 --AIHGMF----------------EDDLVIS-NSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
A+ MF E ++S ++I YA CG L ++ +F + +KDV
Sbjct: 295 VNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARCGLLDVSRKLFDDMEEKDV 354
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSH 245
V WN+MI G V+ + A+ L++EM+ N KPDE+TM+ LSAC++ L+ GIW+ +
Sbjct: 355 VLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGALDVGIWIHRY 414
Query: 246 IEKNGIKMDLTF 257
IEK + +++
Sbjct: 415 IEKYSLSLNVAL 426
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 87/183 (47%), Gaps = 11/183 (6%)
Query: 62 FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYF 121
+ C L L+ +RK+FD + + ++ WN +I + + +F Q + S
Sbjct: 333 YARCGL-----LDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALF-QEMQTSNTK 386
Query: 122 PNEFTLPFVIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCV 176
P+E T+ + A ++ VG IH E ++ + SL+ YA CG+++ A V
Sbjct: 387 PDEITMIHCLSACSQLGALDVGIWIHRYIEKYSLSLNVALGTSLVDMYAKCGNISEALSV 446
Query: 177 FVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDL 236
F I ++ +++ ++I G G AI + EM + PDE+T + +LSAC +
Sbjct: 447 FHGIQTRNSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGMI 506
Query: 237 EFG 239
+ G
Sbjct: 507 QTG 509
>sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520
OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1
Length = 620
Score = 149 bits (375), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 87/259 (33%), Positives = 143/259 (55%), Gaps = 40/259 (15%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSS-LEYARKMFDQIPQPNLYTWN 92
+ Q++LK+IHA+ML T D Y+ +K + C ST S L YA+ +FD +P+ + WN
Sbjct: 25 SKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDRPDTFLWN 84
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNS-PYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-- 149
+IR +S SDEP +S +++ +++ +S P+ N +T P ++KA + F IH
Sbjct: 85 LMIRGFSCSDEPERSLLLYQRMLCSSAPH--NAYTFPSLLKACSNLSAFEETTQIHAQIT 142
Query: 150 ---FEDDLVISNSLIHFYAVCGDLAMAYCVF------------------VMIGKKDV--- 185
+E+D+ NSLI+ YAV G+ +A+ +F V GK D+
Sbjct: 143 KLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALT 202
Query: 186 ----------VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRD 235
+SW +MISG+V+ ++A++L+ EM+ +V+PD V++ LSACA+
Sbjct: 203 LFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGA 262
Query: 236 LEFGIWVSSHIEKNGIKMD 254
LE G W+ S++ K I+MD
Sbjct: 263 LEQGKWIHSYLNKTRIRMD 281
Score = 92.0 bits (227), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 112/244 (45%), Gaps = 37/244 (15%)
Query: 41 RIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSS 100
+IHAQ+ + D Y+ + L A++ + + A +FD+IP+P+ +WN++I+ Y
Sbjct: 136 QIHAQITKLGYENDVYAVNSLINSYAVT--GNFKLAHLLFDRIPEPDDVSWNSVIKGYVK 193
Query: 101 SDEPIQSFMIF---------------------------LQLVY---NSPYFPNEFTLPFV 130
+ + + +F LQL + NS P+ +L
Sbjct: 194 AGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANA 253
Query: 131 IKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
+ A A+ G+ IH D V+ LI YA CG++ A VF I KK V
Sbjct: 254 LSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSV 313
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSH 245
+W ++ISG+ G +AI + EM+ +KP+ +T VL+AC+ +E G +
Sbjct: 314 QAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYS 373
Query: 246 IEKN 249
+E++
Sbjct: 374 MERD 377
Score = 37.7 bits (86), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 44/209 (21%), Positives = 77/209 (36%), Gaps = 43/209 (20%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
+Q K IH+ + T D L + C +E A ++F I + ++ W
Sbjct: 264 EQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCG-----EMEEALEVFKNIKKKSVQAWTA 318
Query: 94 LIRAYS---SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF 150
LI Y+ E I FM ++ PN T V+ A + G+ I
Sbjct: 319 LISGYAYHGHGREAISKFMEMQKMGIK----PNVITFTAVLTACSYTGLVEEGKLIFYSM 374
Query: 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
E D + ++ H+ C+ ++G+ G ++A +E
Sbjct: 375 ERDYNLKPTIEHYG----------CIVDLLGR---------------AGLLDEAKRFIQE 409
Query: 211 MEVENVKPDEVTMVVVLSACAKKRDLEFG 239
M + KP+ V +L AC +++E G
Sbjct: 410 MPL---KPNAVIWGALLKACRIHKNIELG 435
Score = 32.0 bits (71), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 37/86 (43%)
Query: 170 LAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSA 229
L A VF + D WN MI GF E+++ LY+ M + + T +L A
Sbjct: 65 LPYAQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKA 124
Query: 230 CAKKRDLEFGIWVSSHIEKNGIKMDL 255
C+ E + + I K G + D+
Sbjct: 125 CSNLSAFEETTQIHAQITKLGYENDV 150
>sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065
OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2
Length = 595
Score = 144 bits (364), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 83/226 (36%), Positives = 128/226 (56%), Gaps = 8/226 (3%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASK--LFTPCALSTFSSLEYARKMFDQIPQP-NLYTWNTL 94
+L++IHA + K +F +L + + YA K+F +I +P N++ WNTL
Sbjct: 32 KLRQIHAFSIRHGVSISDAELGKHLIFYLVSLPSPPPMSYAHKVFSKIEKPINVFIWNTL 91
Query: 95 IRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM----- 149
IR Y+ I +F ++ ++ + P+ T PF+IKA R+G+ IH +
Sbjct: 92 IRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSVVIRSG 151
Query: 150 FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYR 209
F + + NSL+H YA CGD+A AY VF + +KD+V+WNS+I+GF E G E+A+ LY
Sbjct: 152 FGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYT 211
Query: 210 EMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
EM + +KPD T+V +LSACAK L G V ++ K G+ +L
Sbjct: 212 EMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNL 257
Score = 90.1 bits (222), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 94/164 (57%), Gaps = 11/164 (6%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYF-PNEFTLPFVIKAA 134
A K+FD++P+ +L WN++I ++ + +P ++ ++ ++ NS P+ FT+ ++ A
Sbjct: 175 AYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEM--NSKGIKPDGFTIVSLLSAC 232
Query: 135 ARPVQFRVGQAIH------GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSW 188
A+ +G+ +H G+ + L SN L+ YA CG + A +F + K+ VSW
Sbjct: 233 AKIGALTLGKRVHVYMIKVGLTRN-LHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSW 291
Query: 189 NSMISGFVEGGFFEKAIELYREME-VENVKPDEVTMVVVLSACA 231
S+I G GF ++AIEL++ ME E + P E+T V +L AC+
Sbjct: 292 TSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACS 335
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/199 (18%), Positives = 81/199 (40%), Gaps = 17/199 (8%)
Query: 40 KRIHAQMLSTDFFFDPYSAS---KLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
KR+H M+ + +S++ L+ C +E A+ +FD++ N +W +LI
Sbjct: 242 KRVHVYMIKVGLTRNLHSSNVLLDLYARCG-----RVEEAKTLFDEMVDKNSVSWTSLIV 296
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVI 156
+ + ++ +F + P E T ++ A + + G ++ I
Sbjct: 297 GLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKI 356
Query: 157 SNSLIHF------YAVCGDLAMAY-CVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYR 209
+ HF A G + AY + M + +VV W +++ G + + +
Sbjct: 357 EPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHG--DSDLAEFA 414
Query: 210 EMEVENVKPDEVTMVVVLS 228
+++ ++P+ V+LS
Sbjct: 415 RIQILQLEPNHSGDYVLLS 433
>sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protein At3g22690
OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1
Length = 842
Score = 144 bits (363), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 91/262 (34%), Positives = 143/262 (54%), Gaps = 12/262 (4%)
Query: 4 LSTPVISIPRHPNPTTLTVNNGHQRHPHFLTNQK---QLKRIHAQMLSTDFFFDPYSASK 60
LS V++ P+ L + + P L N K +LK H + D + +K
Sbjct: 10 LSPMVLATTTTTKPSLLNQSKCTKATPSSLKNCKTIDELKMFHRSLTKQGLDNDVSTITK 69
Query: 61 LFT-PCALSTFSSLEYARKMFDQIPQ-PNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNS 118
L C L T SL +A+++F+ + +N+LIR Y+SS ++ ++FL+++ NS
Sbjct: 70 LVARSCELGTRESLSFAKEVFENSESYGTCFMYNSLIRGYASSGLCNEAILLFLRMM-NS 128
Query: 119 PYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMA 173
P+++T PF + A A+ G IHG+ + DL + NSL+HFYA CG+L A
Sbjct: 129 GISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSA 188
Query: 174 YCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIEL-YREMEVENVKPDEVTMVVVLSACAK 232
VF + +++VVSW SMI G+ F + A++L +R + E V P+ VTMV V+SACAK
Sbjct: 189 RKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAK 248
Query: 233 KRDLEFGIWVSSHIEKNGIKMD 254
DLE G V + I +GI+++
Sbjct: 249 LEDLETGEKVYAFIRNSGIEVN 270
Score = 91.7 bits (226), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 105/203 (51%), Gaps = 11/203 (5%)
Query: 58 ASKLFTPCALSTF----SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQ 113
A LF +L F L+ ARK+FD++ + N+ +W ++I Y+ D + +F +
Sbjct: 166 AKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFR 225
Query: 114 LVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH------GMFEDDLVISNSLIHFYAVC 167
+V + PN T+ VI A A+ G+ ++ G+ +DL++S +L+ Y C
Sbjct: 226 MVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVS-ALVDMYMKC 284
Query: 168 GDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVL 227
+ +A +F G ++ N+M S +V G +A+ ++ M V+PD ++M+ +
Sbjct: 285 NAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAI 344
Query: 228 SACAKKRDLEFGIWVSSHIEKNG 250
S+C++ R++ +G ++ +NG
Sbjct: 345 SSCSQLRNILWGKSCHGYVLRNG 367
Score = 91.7 bits (226), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 105/224 (46%), Gaps = 38/224 (16%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
++++ A+++FD+ NL N + Y ++ +F L+ +S P+ ++
Sbjct: 285 NAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVF-NLMMDSGVRPDRISMLSA 343
Query: 131 IKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVC------------------ 167
I + ++ G++ HG FE I N+LI Y C
Sbjct: 344 ISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTV 403
Query: 168 -------------GDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV- 213
G++ A+ F + +K++VSWN++ISG V+G FE+AIE++ M+
Sbjct: 404 VTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQ 463
Query: 214 ENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
E V D VTM+ + SAC L+ W+ +IEKNGI++D+
Sbjct: 464 EGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRL 507
Score = 62.0 bits (149), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 76/164 (46%), Gaps = 5/164 (3%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
++ A + F+ +P+ N+ +WNT+I ++ +F + + T+ +
Sbjct: 419 VDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIAS 478
Query: 133 AAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
A + + I+ E D+ + +L+ ++ CGD A +F + +DV +
Sbjct: 479 ACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSA 538
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
W + I G E+AIEL+ +M + +KPD V V L+AC+
Sbjct: 539 WTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACS 582
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 34/68 (50%)
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIE 247
+NS+I G+ G +AI L+ M + PD+ T LSACAK R GI + I
Sbjct: 102 YNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIV 161
Query: 248 KNGIKMDL 255
K G DL
Sbjct: 162 KMGYAKDL 169
>sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910
OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1
Length = 646
Score = 143 bits (360), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 82/272 (30%), Positives = 139/272 (51%), Gaps = 54/272 (19%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTF--SSLEYARKMFDQIPQPNLYTWNTL 94
+ L +IHA + + D +A+++ CA S L+YA K+F+Q+PQ N ++WNT+
Sbjct: 37 RDLSQIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQRNCFSWNTI 96
Query: 95 IRAYSSSDE--PIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM--- 149
IR +S SDE + + +F +++ + PN FT P V+KA A+ + + G+ IHG+
Sbjct: 97 IRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQIHGLALK 156
Query: 150 --FEDDLVISNSLIHFYAVC---------------------------------------- 167
F D + ++L+ Y +C
Sbjct: 157 YGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIVLWNVMID 216
Query: 168 -----GDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVT 222
GD A +F + ++ VVSWN+MISG+ GFF+ A+E++REM+ +++P+ VT
Sbjct: 217 GYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNYVT 276
Query: 223 MVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
+V VL A ++ LE G W+ + E +GI++D
Sbjct: 277 LVSVLPAISRLGSLELGEWLHLYAEDSGIRID 308
Score = 85.1 bits (209), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 93/175 (53%), Gaps = 6/175 (3%)
Query: 70 FSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPF 129
+ AR +FD++ Q ++ +WNT+I YS + + +F ++ PN TL
Sbjct: 221 LGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREM-KKGDIRPNYVTLVS 279
Query: 130 VIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKD 184
V+ A +R +G+ +H ED D V+ ++LI Y+ CG + A VF + +++
Sbjct: 280 VLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERLPREN 339
Query: 185 VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
V++W++MI+GF G AI+ + +M V+P +V + +L+AC+ +E G
Sbjct: 340 VITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEG 394
>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070
OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
Length = 741
Score = 141 bits (356), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 91/280 (32%), Positives = 136/280 (48%), Gaps = 52/280 (18%)
Query: 7 PVISIPRHPNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCA 66
P SI HP+ + L H + L+ IHAQM+ Y+ SKL C
Sbjct: 27 PYDSIRNHPSLSLL----------HNCKTLQSLRIIHAQMIKIGLHNTNYALSKLIEFCI 76
Query: 67 LS-TFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
LS F L YA +F I +PNL WNT+ R ++ S +P+ + +++ ++ + PN +
Sbjct: 77 LSPHFEGLPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMI-SLGLLPNSY 135
Query: 126 TLPFVIKAAARPVQFRVGQAIHGMF-----EDDLVISNSLIHFYAVCGDLAMAYCVFVMI 180
T PFV+K+ A+ F+ GQ IHG + DL + SLI Y G L A+ VF
Sbjct: 136 TFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKS 195
Query: 181 GKKDVVSWN-------------------------------SMISGFVEGGFFEKAIELYR 209
+DVVS+ +MISG+ E G +++A+EL++
Sbjct: 196 PHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFK 255
Query: 210 EMEVENVKPDEVTMVVVLSACAKKRDLEFG----IWVSSH 245
+M NV+PDE TMV V+SACA+ +E G +W+ H
Sbjct: 256 DMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDH 295
Score = 114 bits (284), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 105/181 (58%), Gaps = 6/181 (3%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
+E A+K+FD+IP ++ +WN +I Y+ + ++ +F ++ + P+E T+ V+
Sbjct: 216 IENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMM-KTNVRPDESTMVTVVS 274
Query: 133 AAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
A A+ +G+ +H +D +L I N+LI Y+ CG+L A +F + KDV+S
Sbjct: 275 ACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVIS 334
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIE 247
WN++I G+ +++A+ L++EM P++VTM+ +L ACA ++ G W+ +I+
Sbjct: 335 WNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYID 394
Query: 248 K 248
K
Sbjct: 395 K 395
Score = 98.6 bits (244), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 98/186 (52%), Gaps = 13/186 (6%)
Query: 61 LFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPY 120
L++ C LE A +F+++P ++ +WNTLI Y+ + ++ ++F +++ S
Sbjct: 310 LYSKCG-----ELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEML-RSGE 363
Query: 121 FPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDL-------VISNSLIHFYAVCGDLAMA 173
PN+ T+ ++ A A +G+ IH + L + SLI YA CGD+ A
Sbjct: 364 TPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAA 423
Query: 174 YCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKK 233
+ VF I K + SWN+MI GF G + + +L+ M ++PD++T V +LSAC+
Sbjct: 424 HQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHS 483
Query: 234 RDLEFG 239
L+ G
Sbjct: 484 GMLDLG 489
Score = 41.2 bits (95), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 41/86 (47%)
Query: 170 LAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSA 229
L A VF I + +++ WN+M G A++LY M + P+ T VL +
Sbjct: 84 LPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKS 143
Query: 230 CAKKRDLEFGIWVSSHIEKNGIKMDL 255
CAK + + G + H+ K G +DL
Sbjct: 144 CAKSKAFKEGQQIHGHVLKLGCDLDL 169
>sp|Q9MA95|PP214_ARATH Putative pentatricopeptide repeat-containing protein At3g05240
OS=Arabidopsis thaliana GN=PCMP-E82 PE=3 SV=2
Length = 565
Score = 140 bits (353), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 78/221 (35%), Positives = 123/221 (55%), Gaps = 11/221 (4%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFS-SLEYARKMFDQIPQPNLYTWNTLIR 96
+L ++H M+ + + S+L C + +L YAR +F+ I P++Y WN++IR
Sbjct: 21 ELNQLHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFESIDCPSVYIWNSMIR 80
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA--RPVQFRVGQAIHGM----- 149
YS+S P ++ +IF Q + Y P+ FT P+V+KA + R +QF G +HG
Sbjct: 81 GYSNSPNPDKA-LIFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQF--GSCVHGFVVKTG 137
Query: 150 FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYR 209
FE ++ +S L+H Y CG++ VF I + +VV+W S+ISGFV F AIE +R
Sbjct: 138 FEVNMYVSTCLLHMYMCCGEVNYGLRVFEDIPQWNVVAWGSLISGFVNNNRFSDAIEAFR 197
Query: 210 EMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
EM+ VK +E MV +L AC + +D+ G W ++ G
Sbjct: 198 EMQSNGVKANETIMVDLLVACGRCKDIVTGKWFHGFLQGLG 238
Score = 90.5 bits (223), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 100/201 (49%), Gaps = 15/201 (7%)
Query: 53 FDPYSASKLFTPCALST--------FSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEP 104
FDPY SK+ L+T L AR +FD +P+ L +WN++I YS + +
Sbjct: 239 FDPYFQSKVGFNVILATSLIDMYAKCGDLRTARYLFDGMPERTLVSWNSIITGYSQNGDA 298
Query: 105 IQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNS 159
++ +FL ++ + P++ T VI+A+ ++GQ+IH F D I +
Sbjct: 299 EEALCMFLDML-DLGIAPDKVTFLSVIRASMIQGCSQLGQSIHAYVSKTGFVKDAAIVCA 357
Query: 160 LIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM-EVENVKP 218
L++ YA GD A F + KKD ++W +I G G +A+ +++ M E N P
Sbjct: 358 LVNMYAKTGDAESAKKAFEDLEKKDTIAWTVVIIGLASHGHGNEALSIFQRMQEKGNATP 417
Query: 219 DEVTMVVVLSACAKKRDLEFG 239
D +T + VL AC+ +E G
Sbjct: 418 DGITYLGVLYACSHIGLVEEG 438
Score = 85.5 bits (210), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 110/229 (48%), Gaps = 22/229 (9%)
Query: 42 IHAQMLSTDFFFDPYSASKLFTPCALSTF---SSLEYARKMFDQIPQPNLYTWNTLIRAY 98
+H ++ T F + Y ++ C L + + Y ++F+ IPQ N+ W +LI +
Sbjct: 129 VHGFVVKTGFEVNMYVST-----CLLHMYMCCGEVNYGLRVFEDIPQWNVVAWGSLISGF 183
Query: 99 SSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED------ 152
+++ + F ++ N NE + ++ A R G+ HG +
Sbjct: 184 VNNNRFSDAIEAFREMQSNGVK-ANETIMVDLLVACGRCKDIVTGKWFHGFLQGLGFDPY 242
Query: 153 -------DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAI 205
+++++ SLI YA CGDL A +F + ++ +VSWNS+I+G+ + G E+A+
Sbjct: 243 FQSKVGFNVILATSLIDMYAKCGDLRTARYLFDGMPERTLVSWNSIITGYSQNGDAEEAL 302
Query: 206 ELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
++ +M + PD+VT + V+ A + + G + +++ K G D
Sbjct: 303 CMFLDMLDLGIAPDKVTFLSVIRASMIQGCSQLGQSIHAYVSKTGFVKD 351
>sp|Q0WQW5|PPR85_ARATH Pentatricopeptide repeat-containing protein At1g59720,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H51 PE=2
SV=2
Length = 638
Score = 140 bits (352), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 86/245 (35%), Positives = 130/245 (53%), Gaps = 17/245 (6%)
Query: 11 IPRHPNPTTLTVNNGHQR---HPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCAL 67
IP +P+ T N HQR ++ QLK++HA L T + P + LF +
Sbjct: 33 IPPASSPSASTAGNHHQRIFSLAETCSDMSQLKQLHAFTLRTTY---PEEPATLFLYGKI 89
Query: 68 ----STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS-DEPIQSFMIFLQLVYNSPYFP 122
S+FS + YA ++FD I + + WNTLIRA + ++FM++ +++ P
Sbjct: 90 LQLSSSFSDVNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSP 149
Query: 123 NEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVF 177
++ T PFV+KA A F G+ +H F D+ ++N LIH Y CG L +A VF
Sbjct: 150 DKHTFPFVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVF 209
Query: 178 VMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLE 237
+ ++ +VSWNSMI V G ++ A++L+REM+ + +PD TM VLSACA L
Sbjct: 210 DEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQ-RSFEPDGYTMQSVLSACAGLGSLS 268
Query: 238 FGIWV 242
G W
Sbjct: 269 LGTWA 273
Score = 105 bits (261), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 104/204 (50%), Gaps = 14/204 (6%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K++H Q++ F D Y + L + L+ ARK+FD++P+ +L +WN++I A
Sbjct: 171 KQVHCQIVKHGFGGDVYVNNGLIH--LYGSCGCLDLARKVFDEMPERSLVSWNSMIDALV 228
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF--------E 151
E + +F ++ + P+ +T+ V+ A A +G H
Sbjct: 229 RFGEYDSALQLFREM--QRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVA 286
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
D+++ NSLI Y CG L MA VF + K+D+ SWN+MI GF G E+A+ + M
Sbjct: 287 MDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRM 346
Query: 212 --EVENVKPDEVTMVVVLSACAKK 233
+ ENV+P+ VT V +L AC +
Sbjct: 347 VDKRENVRPNSVTFVGLLIACNHR 370
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 38/89 (42%), Gaps = 2/89 (2%)
Query: 169 DLAMAYCVFVMIGKKDVVSWNSMISGFVEG-GFFEKAIELYREM-EVENVKPDEVTMVVV 226
D+ A+ VF I WN++I E+A LYR+M E PD+ T V
Sbjct: 98 DVNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFV 157
Query: 227 LSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
L ACA G V I K+G D+
Sbjct: 158 LKACAYIFGFSEGKQVHCQIVKHGFGGDV 186
>sp|Q9FG16|PP367_ARATH Pentatricopeptide repeat-containing protein At5g06540
OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1
Length = 622
Score = 138 bits (347), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 92/284 (32%), Positives = 141/284 (49%), Gaps = 47/284 (16%)
Query: 18 TTLTVNNGHQRHPHFLTNQK-----QLKRIHAQMLSTDFFFDPYSASKLFTPCAL-STFS 71
+ + +N +HP Q LK IH +L T D + AS+L C STF+
Sbjct: 2 SNIVLNTLRFKHPKLALLQSCSSFSDLKIIHGFLLRTHLISDVFVASRLLALCVDDSTFN 61
Query: 72 S----LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
L YA +F QI PNL+ +N LIR +S+ EP ++F + Q++ S +P+ T
Sbjct: 62 KPTNLLGYAYGIFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQML-KSRIWPDNITF 120
Query: 128 PFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
PF+IKA++ VG+ H F++D+ + NSL+H YA CG +A A +F +G
Sbjct: 121 PFLIKASSEMECVLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGF 180
Query: 183 KDVVSWNSMISGFVEGGF-------------------------------FEKAIELYREM 211
+DVVSW SM++G+ + G FEKAI+L+ M
Sbjct: 181 RDVVSWTSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFM 240
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+ E V +E MV V+S+CA LEFG ++ K+ + ++L
Sbjct: 241 KREGVVANETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNL 284
Score = 82.0 bits (201), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 92/182 (50%), Gaps = 6/182 (3%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
+E AR+MFD++P NL+TW+ +I Y+ ++ ++ +F + + NE + VI
Sbjct: 199 VENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLF-EFMKREGVVANETVMVSVIS 257
Query: 133 AAARPVQFRVGQ-----AIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
+ A G+ + +L++ +L+ + CGD+ A VF + + D +S
Sbjct: 258 SCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLPETDSLS 317
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIE 247
W+S+I G G KA+ + +M P +VT VLSAC+ +E G+ + +++
Sbjct: 318 WSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGLEIYENMK 377
Query: 248 KN 249
K+
Sbjct: 378 KD 379
>sp|Q9SIL5|PP165_ARATH Pentatricopeptide repeat-containing protein At2g20540
OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1
Length = 534
Score = 125 bits (314), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 128/254 (50%), Gaps = 38/254 (14%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWN 92
+ ++ + K+I+A ++ + +K+ C ++YA ++F+Q+ PN++ +N
Sbjct: 20 VKSRNEWKKINASIIIHGLSQSSFMVTKMVDFC--DKIEDMDYATRLFNQVSNPNVFLYN 77
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG---- 148
++IRAY+ + I+ QL+ S P+ FT PF+ K+ A +G+ +HG
Sbjct: 78 SIIRAYTHNSLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCYLGKQVHGHLCK 137
Query: 149 --------------------------------MFEDDLVISNSLIHFYAVCGDLAMAYCV 176
M+E D++ NSL+ YA G + A +
Sbjct: 138 FGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMYERDVISWNSLLSGYARLGQMKKAKGL 197
Query: 177 FVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDL 236
F ++ K +VSW +MISG+ G + +A++ +REM++ ++PDE++++ VL +CA+ L
Sbjct: 198 FHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVLPSCAQLGSL 257
Query: 237 EFGIWVSSHIEKNG 250
E G W+ + E+ G
Sbjct: 258 ELGKWIHLYAERRG 271
Score = 81.6 bits (200), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 91/179 (50%), Gaps = 11/179 (6%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
+ ++ A+ +F + + +W +I Y+ +++ M F + + + P+E +L
Sbjct: 186 ARLGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEA-MDFFREMQLAGIEPDEISL 244
Query: 128 PFVIKAAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
V+ + A+ +G+ IH F + N+LI Y+ CG ++ A +F +
Sbjct: 245 ISVLPSCAQLGSLELGKWIHLYAERRGFLKQTGVCNALIEMYSKCGVISQAIQLFGQMEG 304
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIW 241
KDV+SW++MISG+ G AIE + EM+ VKP+ +T + +LSAC+ G+W
Sbjct: 305 KDVISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFLGLLSACS-----HVGMW 358
Score = 35.8 bits (81), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/129 (20%), Positives = 59/129 (45%), Gaps = 4/129 (3%)
Query: 125 FTLPFVIKAAARPVQFRVGQAI--HGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
+ +PF+ + +R ++ +I HG+ + +++ ++ F D+ A +F +
Sbjct: 12 YFIPFLQRVKSRNEWKKINASIIIHGLSQSSFMVTK-MVDFCDKIEDMDYATRLFNQVSN 70
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVK-PDEVTMVVVLSACAKKRDLEFGIW 241
+V +NS+I + + I +Y+++ ++ + PD T + +CA G
Sbjct: 71 PNVFLYNSIIRAYTHNSLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCYLGKQ 130
Query: 242 VSSHIEKNG 250
V H+ K G
Sbjct: 131 VHGHLCKFG 139
>sp|Q38959|PP257_ARATH Pentatricopeptide repeat-containing protein At3g26630,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-A6 PE=2
SV=1
Length = 455
Score = 124 bits (312), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 74/257 (28%), Positives = 130/257 (50%), Gaps = 38/257 (14%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
+N QLK+IH +++ + D +L + S+F +YA +F+Q+ P+ +TWN
Sbjct: 31 SNFSQLKQIHTKIIKHNLTNDQLLVRQLISVS--SSFGETQYASLVFNQLQSPSTFTWNL 88
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM---- 149
+IR+ S + +P ++ ++F+ ++ + ++FT PFVIKA R+G +HG+
Sbjct: 89 MIRSLSVNHKPREALLLFILMMISHQSQFDKFTFPFVIKACLASSSIRLGTQVHGLAIKA 148
Query: 150 -FEDDLVISNSLIHFYAVCG-------------------------------DLAMAYCVF 177
F +D+ N+L+ Y CG L A VF
Sbjct: 149 GFFNDVFFQNTLMDLYFKCGKPDSGRKVFDKMPGRSIVSWTTMLYGLVSNSQLDSAEIVF 208
Query: 178 VMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLE 237
+ ++VVSW +MI+ +V+ ++A +L+R M+V++VKP+E T+V +L A + L
Sbjct: 209 NQMPMRNVVSWTAMITAYVKNRRPDEAFQLFRRMQVDDVKPNEFTIVNLLQASTQLGSLS 268
Query: 238 FGIWVSSHIEKNGIKMD 254
G WV + KNG +D
Sbjct: 269 MGRWVHDYAHKNGFVLD 285
Score = 95.1 bits (235), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 99/181 (54%), Gaps = 7/181 (3%)
Query: 66 ALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
L + S L+ A +F+Q+P N+ +W +I AY + P ++F +F ++ + PNEF
Sbjct: 194 GLVSNSQLDSAEIVFNQMPMRNVVSWTAMITAYVKNRRPDEAFQLFRRMQVDDVK-PNEF 252
Query: 126 TLPFVIKAAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMI 180
T+ +++A+ + +G+ +H F D + +LI Y+ CG L A VF ++
Sbjct: 253 TIVNLLQASTQLGSLSMGRWVHDYAHKNGFVLDCFLGTALIDMYSKCGSLQDARKVFDVM 312
Query: 181 GKKDVVSWNSMISGFVEGGFFEKAIELY-REMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
K + +WNSMI+ G E+A+ L+ E +V+PD +T V VLSACA +++ G
Sbjct: 313 QGKSLATWNSMITSLGVHGCGEEALSLFEEMEEEASVEPDAITFVGVLSACANTGNVKDG 372
Query: 240 I 240
+
Sbjct: 373 L 373
>sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770
OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1
Length = 694
Score = 124 bits (311), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 133/230 (57%), Gaps = 14/230 (6%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
T++ QLK+IHA++L F + +KL A S+F + +AR++FD +P+P ++ WN
Sbjct: 32 THKAQLKQIHARLLVLGLQFSGFLITKLIH--ASSSFGDITFARQVFDDLPRPQIFPWNA 89
Query: 94 LIRAYSSSDEPIQSFMIF--LQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-- 149
+IR YS ++ + +++ +QL SP + FT P ++KA + ++G+ +H
Sbjct: 90 IIRGYSRNNHFQDALLMYSNMQLARVSP---DSFTFPHLLKACSGLSHLQMGRFVHAQVF 146
Query: 150 ---FEDDLVISNSLIHFYAVCGDLAMAYCVF--VMIGKKDVVSWNSMISGFVEGGFFEKA 204
F+ D+ + N LI YA C L A VF + + ++ +VSW +++S + + G +A
Sbjct: 147 RLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEA 206
Query: 205 IELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
+E++ +M +VKPD V +V VL+A +DL+ G + + + K G++++
Sbjct: 207 LEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIE 256
Score = 99.8 bits (247), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 107/217 (49%), Gaps = 14/217 (6%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDP---YSASKLFTPCALSTFSSLEYARKMFDQIPQPNLY 89
L + KQ + IHA ++ +P S + ++ C + A+ +FD++ PNL
Sbjct: 235 LQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCG-----QVATAKILFDKMKSPNLI 289
Query: 90 TWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH-- 147
WN +I Y+ + ++ +F +++ N P+ ++ I A A+ ++++
Sbjct: 290 LWNAMISGYAKNGYAREAIDMFHEMI-NKDVRPDTISITSAISACAQVGSLEQARSMYEY 348
Query: 148 ---GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKA 204
+ DD+ IS++LI +A CG + A VF +DVV W++MI G+ G +A
Sbjct: 349 VGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREA 408
Query: 205 IELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIW 241
I LYR ME V P++VT + +L AC + G W
Sbjct: 409 ISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWW 445
Score = 96.7 bits (239), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 113/223 (50%), Gaps = 20/223 (8%)
Query: 30 PHFLT-----NQKQLKR-IHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQI 83
PH L + Q+ R +HAQ+ F D + + L A L AR +F+ +
Sbjct: 123 PHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYA--KCRRLGSARTVFEGL 180
Query: 84 PQP--NLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFR 141
P P + +W ++ AY+ + EP+++ IF Q+ P+ L V+ A +
Sbjct: 181 PLPERTIVSWTAIVSAYAQNGEPMEALEIFSQM-RKMDVKPDWVALVSVLNAFTCLQDLK 239
Query: 142 VGQAIHGM-------FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISG 194
G++IH E DL+IS L YA CG +A A +F + +++ WN+MISG
Sbjct: 240 QGRSIHASVVKMGLEIEPDLLIS--LNTMYAKCGQVATAKILFDKMKSPNLILWNAMISG 297
Query: 195 FVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLE 237
+ + G+ +AI+++ EM ++V+PD +++ +SACA+ LE
Sbjct: 298 YAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLE 340
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 49/96 (51%)
Query: 160 LIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPD 219
LIH + GD+ A VF + + + WN++I G+ F+ A+ +Y M++ V PD
Sbjct: 59 LIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPD 118
Query: 220 EVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
T +L AC+ L+ G +V + + + G D+
Sbjct: 119 SFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADV 154
Score = 38.9 bits (89), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 43/213 (20%), Positives = 82/213 (38%), Gaps = 38/213 (17%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
+Q + ++ + +D+ D + +S L F C S+E AR +FD+ ++ W+
Sbjct: 340 EQARSMYEYVGRSDYRDDVFISSALIDMFAKCG-----SVEGARLVFDRTLDRDVVVWSA 394
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDD 153
+I Y ++ ++ + + PN+ T ++ A R G D
Sbjct: 395 MIVGYGLHGRAREAISLYRAMERGGVH-PNDVTFLGLLMACNHSGMVREGWWFFNRMADH 453
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213
+ N YA CV ++G+ G ++A E+ + M V
Sbjct: 454 KI--NPQQQHYA---------CVIDLLGR---------------AGHLDQAYEVIKCMPV 487
Query: 214 ENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
+ P +LSAC K R +E G + + +
Sbjct: 488 Q---PGVTVWGALLSACKKHRHVELGEYAAQQL 517
>sp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protein At3g24000,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2
SV=1
Length = 633
Score = 124 bits (310), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 74/221 (33%), Positives = 117/221 (52%), Gaps = 8/221 (3%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
Q + +HA +L + F D + L A SLE ARK+F+++PQ + TW TLI
Sbjct: 78 QGRIVHAHILQSIFRHDIVMGNTLLNMYA--KCGSLEEARKVFEKMPQRDFVTWTTLISG 135
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FED 152
YS D P + + F Q++ Y PNEFTL VIKAAA + G +HG F+
Sbjct: 136 YSQHDRPCDALLFFNQML-RFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDS 194
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
++ + ++L+ Y G + A VF + ++ VSWN++I+G EKA+EL++ M
Sbjct: 195 NVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGML 254
Query: 213 VENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKM 253
+ +P + + AC+ LE G WV +++ K+G K+
Sbjct: 255 RDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKL 295
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 97/189 (51%), Gaps = 6/189 (3%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
+ + ++ A+ +FD + N +WN LI ++ ++ +F Q + + P+ F+
Sbjct: 207 TRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELF-QGMLRDGFRPSHFSY 265
Query: 128 PFVIKAAARPVQFRVGQAIHGMF---EDDLVI--SNSLIHFYAVCGDLAMAYCVFVMIGK 182
+ A + G+ +H + LV N+L+ YA G + A +F + K
Sbjct: 266 ASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAK 325
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWV 242
+DVVSWNS+++ + + GF ++A+ + EM ++P+E++ + VL+AC+ L+ G
Sbjct: 326 RDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHY 385
Query: 243 SSHIEKNGI 251
++K+GI
Sbjct: 386 YELMKKDGI 394
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/210 (20%), Positives = 85/210 (40%), Gaps = 32/210 (15%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
+Q K +HA M+ + ++ + L A S S+ ARK+FD++ + ++ +WN+L+
Sbjct: 279 EQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKS--GSIHDARKIFDRLAKRDVVSWNSLLT 336
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVI 156
AY+ ++ F ++ PNE + V+ A + G + + + D ++
Sbjct: 337 AYAQHGFGKEAVWWFEEM-RRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKDGIV 395
Query: 157 SNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENV 216
+ H+ V L A G +A+ EM +E
Sbjct: 396 PEAW-HYVTVVDLLGRA-------------------------GDLNRALRFIEEMPIE-- 427
Query: 217 KPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
P +L+AC ++ E G + + H+
Sbjct: 428 -PTAAIWKALLNACRMHKNTELGAYAAEHV 456
>sp|Q0WNP3|PP319_ARATH Pentatricopeptide repeat-containing protein At4g18520
OS=Arabidopsis thaliana GN=PCMP-A2 PE=2 SV=1
Length = 617
Score = 122 bits (306), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 74/226 (32%), Positives = 117/226 (51%), Gaps = 12/226 (5%)
Query: 37 KQLKRIHAQMLSTDFFFDP---YSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
+ +KRIHA L FD Y + L + C L YARK+FD +P+ N TW
Sbjct: 99 RLIKRIHAMALKC---FDDQVIYFGNNLISSCV--RLGDLVYARKVFDSMPEKNTVTWTA 153
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG----M 149
+I Y ++F +F V + F NE ++ +R +F +G+ +HG +
Sbjct: 154 MIDGYLKYGLEDEAFALFEDYVKHGIRFTNERMFVCLLNLCSRRAEFELGRQVHGNMVKV 213
Query: 150 FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYR 209
+L++ +SL++FYA CG+L A F M+ +KDV+SW ++IS G KAI ++
Sbjct: 214 GVGNLIVESSLVYFYAQCGELTSALRAFDMMEEKDVISWTAVISACSRKGHGIKAIGMFI 273
Query: 210 EMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
M P+E T+ +L AC++++ L FG V S + K IK D+
Sbjct: 274 GMLNHWFLPNEFTVCSILKACSEEKALRFGRQVHSLVVKRMIKTDV 319
Score = 100 bits (249), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 101/188 (53%), Gaps = 6/188 (3%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
L A + FD + + ++ +W +I A S I++ +F+ ++ N + PNEFT+ ++K
Sbjct: 234 LTSALRAFDMMEEKDVISWTAVISACSRKGHGIKAIGMFIGML-NHWFLPNEFTVCSILK 292
Query: 133 AAARPVQFRVGQAIHG-----MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
A + R G+ +H M + D+ + SL+ YA CG+++ VF + ++ V+
Sbjct: 293 ACSEEKALRFGRQVHSLVVKRMIKTDVFVGTSLMDMYAKCGEISDCRKVFDGMSNRNTVT 352
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIE 247
W S+I+ GF E+AI L+R M+ ++ + +T+V +L AC L G + + I
Sbjct: 353 WTSIIAAHAREGFGEEAISLFRIMKRRHLIANNLTVVSILRACGSVGALLLGKELHAQII 412
Query: 248 KNGIKMDL 255
KN I+ ++
Sbjct: 413 KNSIEKNV 420
Score = 93.6 bits (231), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 98/200 (49%), Gaps = 14/200 (7%)
Query: 40 KRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K +HAQ++ + Y S L + C S A + Q+P ++ +W +I
Sbjct: 405 KELHAQIIKNSIEKNVYIGSTLVWLYCKCGES-----RDAFNVLQQLPSRDVVSWTAMIS 459
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVI 156
SS ++ + FL+ + PN FT +KA A +G++IH + + + +
Sbjct: 460 GCSSLGHESEA-LDFLKEMIQEGVEPNPFTYSSALKACANSESLLIGRSIHSIAKKNHAL 518
Query: 157 SN-----SLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
SN +LIH YA CG ++ A+ VF + +K++VSW +MI G+ GF +A++L M
Sbjct: 519 SNVFVGSALIHMYAKCGFVSEAFRVFDSMPEKNLVSWKAMIMGYARNGFCREALKLMYRM 578
Query: 212 EVENVKPDEVTMVVVLSACA 231
E E + D+ +LS C
Sbjct: 579 EAEGFEVDDYIFATILSTCG 598
Score = 84.7 bits (208), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 102/219 (46%), Gaps = 16/219 (7%)
Query: 40 KRIHA----QMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLI 95
+++H+ +M+ TD F S ++ C + RK+FD + N TW ++I
Sbjct: 304 RQVHSLVVKRMIKTDVFVGT-SLMDMYAKCG-----EISDCRKVFDGMSNRNTVTWTSII 357
Query: 96 RAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF----- 150
A++ ++ +F +++ N T+ +++A +G+ +H
Sbjct: 358 AAHAREGFGEEAISLF-RIMKRRHLIANNLTVVSILRACGSVGALLLGKELHAQIIKNSI 416
Query: 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
E ++ I ++L+ Y CG+ A+ V + +DVVSW +MISG G +A++ +E
Sbjct: 417 EKNVYIGSTLVWLYCKCGESRDAFNVLQQLPSRDVVSWTAMISGCSSLGHESEALDFLKE 476
Query: 211 MEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249
M E V+P+ T L ACA L G + S +KN
Sbjct: 477 MIQEGVEPNPFTYSSALKACANSESLLIGRSIHSIAKKN 515
>sp|Q9ZQA1|PP188_ARATH Pentatricopeptide repeat-containing protein At2g36730
OS=Arabidopsis thaliana GN=PCMP-E44 PE=3 SV=1
Length = 501
Score = 121 bits (304), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 75/216 (34%), Positives = 111/216 (51%), Gaps = 10/216 (4%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K L +IH Q+ + D + S+L +LS L +AR + TWN L R
Sbjct: 27 KHLLQIHGQIHLSSLQNDSFIISELVRVSSLSLAKDLAFARTLLLHSSDSTPSTWNMLSR 86
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAI------HGMF 150
YSSSD P++S ++ ++ PN+ T PF++KA A + G+ I HG F
Sbjct: 87 GYSSSDSPVESIWVYSEMKRRGIK-PNKLTFPFLLKACASFLGLTAGRQIQVEVLKHG-F 144
Query: 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
+ D+ + N+LIH Y C + A VF + +++VVSWNS+++ VE G E + E
Sbjct: 145 DFDVYVGNNLIHLYGTCKKTSDARKVFDEMTERNVVSWNSIMTALVENGKLNLVFECFCE 204
Query: 211 MEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
M + PDE TMVV+LSAC +L G V S +
Sbjct: 205 MIGKRFCPDETTMVVLLSACGG--NLSLGKLVHSQV 238
Score = 85.5 bits (210), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 103/198 (52%), Gaps = 11/198 (5%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
++I ++L F FD Y + L T ARK+FD++ + N+ +WN+++ A
Sbjct: 133 RQIQVEVLKHGFDFDVYVGNNLIH--LYGTCKKTSDARKVFDEMTERNVVSWNSIMTALV 190
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDL 154
+ + F F +++ + P+E T+ ++ A + +G+ +H E +
Sbjct: 191 ENGKLNLVFECFCEMI-GKRFCPDETTMVVLLSACGGNLS--LGKLVHSQVMVRELELNC 247
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
+ +L+ YA G L A VF + K+V +W++MI G + GF E+A++L+ +M E
Sbjct: 248 RLGTALVDMYAKSGGLEYARLVFERMVDKNVWTWSAMIVGLAQYGFAEEALQLFSKMMKE 307
Query: 215 -NVKPDEVTMVVVLSACA 231
+V+P+ VT + VL AC+
Sbjct: 308 SSVRPNYVTFLGVLCACS 325
Score = 37.7 bits (86), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 7/117 (5%)
Query: 146 IHGM-----FEDDLVISNSLIHF--YAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEG 198
IHG ++D I + L+ ++ DLA A + + +WN + G+
Sbjct: 32 IHGQIHLSSLQNDSFIISELVRVSSLSLAKDLAFARTLLLHSSDSTPSTWNMLSRGYSSS 91
Query: 199 GFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
++I +Y EM+ +KP+++T +L ACA L G + + K+G D+
Sbjct: 92 DSPVESIWVYSEMKRRGIKPNKLTFPFLLKACASFLGLTAGRQIQVEVLKHGFDFDV 148
>sp|Q8LK93|PP145_ARATH Pentatricopeptide repeat-containing protein At2g02980
OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2
Length = 603
Score = 120 bits (301), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 116/197 (58%), Gaps = 7/197 (3%)
Query: 59 SKLFTPCALS-TFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYN 117
+KL C S T SS+ YAR +F+ + +P++ +N++ R YS P++ F +F++++ +
Sbjct: 64 AKLINFCTESPTESSMSYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILED 123
Query: 118 SPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAM 172
P+ +T P ++KA A G+ +H + +D++ + +LI+ Y C D+
Sbjct: 124 G-ILPDNYTFPSLLKACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDS 182
Query: 173 AYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAK 232
A CVF I + VV +N+MI+G+ +A+ L+REM+ + +KP+E+T++ VLS+CA
Sbjct: 183 ARCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCAL 242
Query: 233 KRDLEFGIWVSSHIEKN 249
L+ G W+ + +K+
Sbjct: 243 LGSLDLGKWIHKYAKKH 259
Score = 93.2 bits (230), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 103/198 (52%), Gaps = 14/198 (7%)
Query: 61 LFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPY 120
++T C ++ AR +FD+I +P + +N +I Y+ + P ++ +F ++ Y
Sbjct: 173 MYTEC-----EDVDSARCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREM--QGKY 225
Query: 121 F-PNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAY 174
PNE TL V+ + A +G+ IH F + ++ +LI +A CG L A
Sbjct: 226 LKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAV 285
Query: 175 CVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKR 234
+F + KD +W++MI + G EK++ ++ M ENV+PDE+T + +L+AC+
Sbjct: 286 SIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSHTG 345
Query: 235 DLEFG-IWVSSHIEKNGI 251
+E G + S + K GI
Sbjct: 346 RVEEGRKYFSQMVSKFGI 363
>sp|P93011|PP182_ARATH Pentatricopeptide repeat-containing protein At2g33760
OS=Arabidopsis thaliana GN=PCMP-H6 PE=3 SV=1
Length = 583
Score = 119 bits (298), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 122/226 (53%), Gaps = 8/226 (3%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
KQL+++HA ++ T + +KL T + ++ Y +F +P P+ + +N++I+
Sbjct: 23 KQLQQVHAHLIVTGYGRSRSLLTKLITLAC--SARAIAYTHLLFLSVPLPDDFLFNSVIK 80
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH-----GMFE 151
+ S P+ + +++ +S P+ +T VIK+ A R+G+ +H F
Sbjct: 81 STSKLRLPLHCVAYYRRML-SSNVSPSNYTFTSVIKSCADLSALRIGKGVHCHAVVSGFG 139
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
D + +L+ FY+ CGD+ A VF + +K +V+WNS++SGF + G ++AI+++ +M
Sbjct: 140 LDTYVQAALVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQM 199
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTF 257
+PD T V +LSACA+ + G WV +I G+ +++
Sbjct: 200 RESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEGLDLNVKL 245
Score = 100 bits (248), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 112/216 (51%), Gaps = 9/216 (4%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K +H + + F D Y + L T S +E AR++FD++P+ ++ WN+L+ +
Sbjct: 127 KGVHCHAVVSGFGLDTYVQAALVT--FYSKCGDMEGARQVFDRMPEKSIVAWNSLVSGFE 184
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDL 154
+ ++ +F Q+ S + P+ T ++ A A+ +G +H + ++
Sbjct: 185 QNGLADEAIQVFYQM-RESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEGLDLNV 243
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
+ +LI+ Y+ CGD+ A VF + + +V +W +MIS + G+ ++A+EL+ +ME +
Sbjct: 244 KLGTALINLYSRCGDVGKAREVFDKMKETNVAAWTAMISAYGTHGYGQQAVELFNKMEDD 303
Query: 215 -NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249
P+ VT V VLSACA +E G V + K+
Sbjct: 304 CGPIPNNVTFVAVLSACAHAGLVEEGRSVYKRMTKS 339
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/171 (18%), Positives = 67/171 (39%), Gaps = 25/171 (14%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
AR++FD++ + N+ W +I AY + Q+ +F ++ + PN T V+ A A
Sbjct: 262 AREVFDKMKETNVAAWTAMISAYGTHGYGQQAVELFNKMEDDCGPIPNNVTFVAVLSACA 321
Query: 136 RPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGF 195
G+ E+ + + Y + + C+ M+G+
Sbjct: 322 HA----------GLVEEGRSVYKRMTKSYRLIPGVEHHVCMVDMLGR------------- 358
Query: 196 VEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
GF ++A + +++ +L AC R+ + G+ ++ +
Sbjct: 359 --AGFLDEAYKFIHQLDATGKATAPALWTAMLGACKMHRNYDLGVEIAKRL 407
>sp|Q9LJR6|PP253_ARATH Putative pentatricopeptide repeat-containing protein At3g25060,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E96 PE=3
SV=1
Length = 601
Score = 119 bits (298), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/237 (29%), Positives = 121/237 (51%), Gaps = 13/237 (5%)
Query: 32 FLTNQKQLKR----IHAQMLSTDFFFDPYSASK-LFTPCALSTFSSLEYARKMFDQIPQP 86
FL + +LKR IHA ++ST + S S+ L C + YARK+FD++PQ
Sbjct: 22 FLQSISKLKRHITQIHAFVISTGNLLNGSSISRDLIASCG--RIGEISYARKVFDELPQR 79
Query: 87 NLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAI 146
+ +N++I YS P + ++ Q++ P+ T IKA + G+A+
Sbjct: 80 GVSVYNSMIVVYSRGKNPDEVLRLYDQMIAEKIQ-PDSSTFTMTIKACLSGLVLEKGEAV 138
Query: 147 HGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFF 201
+++D+ + +S+++ Y CG + A +F + K+DV+ W +M++GF + G
Sbjct: 139 WCKAVDFGYKNDVFVCSSVLNLYMKCGKMDEAEVLFGKMAKRDVICWTTMVTGFAQAGKS 198
Query: 202 EKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
KA+E YREM+ E D V M+ +L A D + G V ++ + G+ M++ E
Sbjct: 199 LKAVEFYREMQNEGFGRDRVVMLGLLQASGDLGDTKMGRSVHGYLYRTGLPMNVVVE 255
Score = 82.4 bits (202), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 100/201 (49%), Gaps = 11/201 (5%)
Query: 53 FDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFL 112
F S L+ C ++ A +F ++ + ++ W T++ ++ + + +++ +
Sbjct: 152 FVCSSVLNLYMKCG-----KMDEAEVLFGKMAKRDVICWTTMVTGFAQAGKSLKAVEFYR 206
Query: 113 QLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVC 167
++ N + + + +++A+ ++G+++HG ++V+ SL+ YA
Sbjct: 207 EM-QNEGFGRDRVVMLGLLQASGDLGDTKMGRSVHGYLYRTGLPMNVVVETSLVDMYAKV 265
Query: 168 GDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVL 227
G + +A VF + K VSW S+ISGF + G KA E EM+ +PD VT+V VL
Sbjct: 266 GFIEVASRVFSRMMFKTAVSWGSLISGFAQNGLANKAFEAVVEMQSLGFQPDLVTLVGVL 325
Query: 228 SACAKKRDLEFGIWVSSHIEK 248
AC++ L+ G V +I K
Sbjct: 326 VACSQVGSLKTGRLVHCYILK 346
Score = 75.5 bits (184), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 108/225 (48%), Gaps = 8/225 (3%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWN 92
L + K + +H + T + + L A F +E A ++F ++ +W
Sbjct: 230 LGDTKMGRSVHGYLYRTGLPMNVVVETSLVDMYAKVGF--IEVASRVFSRMMFKTAVSWG 287
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFED 152
+LI ++ + ++F +++ + + P+ TL V+ A ++ + G+ +H
Sbjct: 288 SLISGFAQNGLANKAFEAVVEM-QSLGFQPDLVTLVGVLVACSQVGSLKTGRLVHCYILK 346
Query: 153 ----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY 208
D V + +L+ Y+ CG L+ + +F +G+KD+V WN+MIS + G ++ + L+
Sbjct: 347 RHVLDRVTATALMDMYSKCGALSSSREIFEHVGRKDLVCWNTMISCYGIHGNGQEVVSLF 406
Query: 209 REMEVENVKPDEVTMVVVLSACAKKRDLEFGI-WVSSHIEKNGIK 252
+M N++PD T +LSA + +E G W S I K I+
Sbjct: 407 LKMTESNIEPDHATFASLLSALSHSGLVEQGQHWFSVMINKYKIQ 451
Score = 38.9 bits (89), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 36/172 (20%), Positives = 66/172 (38%), Gaps = 29/172 (16%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
S +L +R++F+ + + +L WNT+I Y + +FL++ S P+ T
Sbjct: 363 SKCGALSSSREIFEHVGRKDLVCWNTMISCYGIHGNGQEVVSLFLKMT-ESNIEPDHATF 421
Query: 128 PFVIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
++ A + GQ + + I S H+ VC
Sbjct: 422 ASLLSALSHSGLVEQGQHWFSVMINKYKIQPSEKHY--VC-------------------- 459
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+I G E+A+++ +++N P V +LS C R+L G
Sbjct: 460 ---LIDLLARAGRVEEALDMINSEKLDNALP---IWVALLSGCINHRNLSVG 505
>sp|Q9FMA1|PP433_ARATH Pentatricopeptide repeat-containing protein At5g56310
OS=Arabidopsis thaliana GN=PCMP-E13 PE=2 SV=1
Length = 530
Score = 119 bits (297), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 84/264 (31%), Positives = 121/264 (45%), Gaps = 42/264 (15%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
N K LK+ H M+ T D + +K C S L YA +F P PN Y NT
Sbjct: 26 NNLKTLKQSHCYMIITGLNRDNLNVAKFIEAC--SNAGHLRYAYSVFTHQPCPNTYLHNT 83
Query: 94 LIRAYSSSDEP-IQSFMIFL-QLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-- 149
+IRA S DEP S I + + ++ P+ FT PFV+K A R G+ IHG
Sbjct: 84 MIRALSLLDEPNAHSIAITVYRKLWALCAKPDTFTFPFVLKIAVRVSDVWFGRQIHGQVV 143
Query: 150 ---FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSM--------------- 191
F+ + + LI Y CG L A +F + KDV WN++
Sbjct: 144 VFGFDSSVHVVTGLIQMYFSCGGLGDARKMFDEMLVKDVNVWNALLAGYGKVGEMDEARS 203
Query: 192 ------------------ISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKK 233
ISG+ + G +AIE+++ M +ENV+PDEVT++ VLSACA
Sbjct: 204 LLEMMPCWVRNEVSWTCVISGYAKSGRASEAIEVFQRMLMENVEPDEVTLLAVLSACADL 263
Query: 234 RDLEFGIWVSSHIEKNGIKMDLTF 257
LE G + S+++ G+ ++
Sbjct: 264 GSLELGERICSYVDHRGMNRAVSL 287
Score = 79.0 bits (193), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 90/176 (51%), Gaps = 8/176 (4%)
Query: 71 SSLEYARKMFDQIP--QPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLP 128
++ AR + + +P N +W +I Y+ S ++ +F +++ + P+E TL
Sbjct: 196 GEMDEARSLLEMMPCWVRNEVSWTCVISGYAKSGRASEAIEVFQRMLMENVE-PDEVTLL 254
Query: 129 FVIKAAARPVQFRVGQAI-----HGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKK 183
V+ A A +G+ I H + ++N++I YA G++ A VF + ++
Sbjct: 255 AVLSACADLGSLELGERICSYVDHRGMNRAVSLNNAVIDMYAKSGNITKALDVFECVNER 314
Query: 184 DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+VV+W ++I+G G +A+ ++ M V+P++VT + +LSAC+ ++ G
Sbjct: 315 NVVTWTTIIAGLATHGHGAEALAMFNRMVKAGVRPNDVTFIAILSACSHVGWVDLG 370
>sp|O49399|PP321_ARATH Pentatricopeptide repeat-containing protein At4g18840
OS=Arabidopsis thaliana GN=PCMP-E101 PE=3 SV=2
Length = 545
Score = 119 bits (297), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 83/286 (29%), Positives = 132/286 (46%), Gaps = 70/286 (24%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTF-SSLEYARKMFDQIPQPNLYTWNTLIR 96
++++ HA ML T F D +SASKL A + ++ YA + ++I PN +T N++IR
Sbjct: 54 EIQQAHAFMLKTGLFHDTFSASKLVAFAATNPEPKTVSYAHSILNRIGSPNGFTHNSVIR 113
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF-----E 151
AY++S P + +F +++ P FP++++ FV+KA A F G+ IHG+F
Sbjct: 114 AYANSSTPEVALTVFREMLLG-PVFPDKYSFTFVLKACAAFCGFEEGRQIHGLFIKSGLV 172
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS--------------------- 190
D+ + N+L++ Y G +A V + +D VSWNS
Sbjct: 173 TDVFVENTLVNVYGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYLEKGLVDEARALFDEM 232
Query: 191 ----------MISGFVEGGFFEKAIELYREMEVENV------------------------ 216
MISG+ G ++A E++ M V +V
Sbjct: 233 EERNVESWNFMISGYAAAGLVKEAKEVFDSMPVRDVVSWNAMVTAYAHVGCYNEVLEVFN 292
Query: 217 --------KPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
KPD T+V VLSACA L G WV +I+K+GI+++
Sbjct: 293 KMLDDSTEKPDGFTLVSVLSACASLGSLSQGEWVHVYIDKHGIEIE 338
Score = 89.4 bits (220), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 96/188 (51%), Gaps = 16/188 (8%)
Query: 48 STDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQS 107
S +F Y+A+ L ++ A+++FD +P ++ +WN ++ AY+ +
Sbjct: 239 SWNFMISGYAAAGL-----------VKEAKEVFDSMPVRDVVSWNAMVTAYAHVGCYNEV 287
Query: 108 FMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLV-----ISNSLIH 162
+F +++ +S P+ FTL V+ A A G+ +H + + ++ +L+
Sbjct: 288 LEVFNKMLDDSTEKPDGFTLVSVLSACASLGSLSQGEWVHVYIDKHGIEIEGFLATALVD 347
Query: 163 FYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVT 222
Y+ CG + A VF K+DV +WNS+IS G + A+E++ EM E KP+ +T
Sbjct: 348 MYSKCGKIDKALEVFRATSKRDVSTWNSIISDLSVHGLGKDALEIFSEMVYEGFKPNGIT 407
Query: 223 MVVVLSAC 230
+ VLSAC
Sbjct: 408 FIGVLSAC 415
Score = 37.0 bits (84), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 148 GMFEDDLVISNSLIHFYAVCGD---LAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKA 204
G+F D S L+ F A + ++ A+ + IG + + NS+I + E A
Sbjct: 66 GLFHDTFSASK-LVAFAATNPEPKTVSYAHSILNRIGSPNGFTHNSVIRAYANSSTPEVA 124
Query: 205 IELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
+ ++REM + V PD+ + VL ACA E G + K+G+ D+ E
Sbjct: 125 LTVFREMLLGPVFPDKYSFTFVLKACAAFCGFEEGRQIHGLFIKSGLVTDVFVE 178
>sp|Q9LXY5|PP284_ARATH Pentatricopeptide repeat-containing protein At3g56550
OS=Arabidopsis thaliana GN=PCMP-H80 PE=2 SV=1
Length = 581
Score = 118 bits (296), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 67/210 (31%), Positives = 110/210 (52%), Gaps = 6/210 (2%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQI-PQPNLYTWNTLI 95
K+L++IH+ ++ P + L CA+S SL +A+ +FD P+ WN LI
Sbjct: 19 KKLRKIHSHVIINGLQHHPSIFNHLLRFCAVSVTGSLSHAQLLFDHFDSDPSTSDWNYLI 78
Query: 96 RAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAAR----PVQFRV-GQAIHGMF 150
R +S+S P+ S + + +++ +S P+ FT F +K+ R P + G I F
Sbjct: 79 RGFSNSSSPLNSILFYNRMLLSSVSRPDLFTFNFALKSCERIKSIPKCLEIHGSVIRSGF 138
Query: 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210
DD +++ SL+ Y+ G + +A VF + +D+VSWN MI F G +A+ +Y+
Sbjct: 139 LDDAIVATSLVRCYSANGSVEIASKVFDEMPVRDLVSWNVMICCFSHVGLHNQALSMYKR 198
Query: 211 MEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
M E V D T+V +LS+CA L G+
Sbjct: 199 MGNEGVCGDSYTLVALLSSCAHVSALNMGV 228
Score = 98.2 bits (243), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 105/204 (51%), Gaps = 8/204 (3%)
Query: 42 IHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS 101
IH ++ + F D A+ L S S+E A K+FD++P +L +WN +I +S
Sbjct: 129 IHGSVIRSGFLDDAIVATSLVR--CYSANGSVEIASKVFDEMPVRDLVSWNVMICCFSHV 186
Query: 102 DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVI 156
Q+ ++ ++ N + +TL ++ + A +G +H + E + +
Sbjct: 187 GLHNQALSMYKRM-GNEGVCGDSYTLVALLSSCAHVSALNMGVMLHRIACDIRCESCVFV 245
Query: 157 SNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENV 216
SN+LI YA CG L A VF + K+DV++WNSMI G+ G +AI +R+M V
Sbjct: 246 SNALIDMYAKCGSLENAIGVFNGMRKRDVLTWNSMIIGYGVHGHGVEAISFFRKMVASGV 305
Query: 217 KPDEVTMVVVLSACAKKRDLEFGI 240
+P+ +T + +L C+ + ++ G+
Sbjct: 306 RPNAITFLGLLLGCSHQGLVKEGV 329
>sp|O64705|PP184_ARATH Pentatricopeptide repeat-containing protein At2g34400
OS=Arabidopsis thaliana GN=PCMP-E23 PE=3 SV=2
Length = 621
Score = 118 bits (295), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 112/207 (54%), Gaps = 11/207 (5%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
QL++I AQML P A+ Y+ +F +PN Y++N +IR
Sbjct: 52 QLRQIQAQML-----LHSVEKPNFLIPKAVE-LGDFNYSSFLFSVTEEPNHYSFNYMIRG 105
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF-----ED 152
+++ ++ + + + S P++FT FV A A+ + VG+++H E
Sbjct: 106 LTNTWNDHEAALSLYRRMKFSGLKPDKFTYNFVFIACAKLEEIGVGRSVHSSLFKVGLER 165
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
D+ I++SLI YA CG + A +F I ++D VSWNSMISG+ E G+ + A++L+R+ME
Sbjct: 166 DVHINHSLIMMYAKCGQVGYARKLFDEITERDTVSWNSMISGYSEAGYAKDAMDLFRKME 225
Query: 213 VENVKPDEVTMVVVLSACAKKRDLEFG 239
E +PDE T+V +L AC+ DL G
Sbjct: 226 EEGFEPDERTLVSMLGACSHLGDLRTG 252
Score = 99.8 bits (247), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 91/176 (51%), Gaps = 6/176 (3%)
Query: 75 YARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAA 134
YARK+FD+I + + +WN++I YS + + +F ++ + P+E TL ++ A
Sbjct: 185 YARKLFDEITERDTVSWNSMISGYSEAGYAKDAMDLFRKM-EEEGFEPDERTLVSMLGAC 243
Query: 135 ARPVQFRVGQAIHGMFEDDLV-----ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWN 189
+ R G+ + M + + + LI Y CGDL A VF + KKD V+W
Sbjct: 244 SHLGDLRTGRLLEEMAITKKIGLSTFLGSKLISMYGKCGDLDSARRVFNQMIKKDRVAWT 303
Query: 190 SMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSH 245
+MI+ + + G +A +L+ EME V PD T+ VLSAC LE G + +H
Sbjct: 304 AMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGSVGALELGKQIETH 359
Score = 75.1 bits (183), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 101/221 (45%), Gaps = 14/221 (6%)
Query: 15 PNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLE 74
P+ TL G H L + + + + ++ + SKL + L+
Sbjct: 231 PDERTLVSMLGACSH---LGDLRTGRLLEEMAITKKIGLSTFLGSKLIS--MYGKCGDLD 285
Query: 75 YARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAA 134
AR++F+Q+ + + W +I YS + + ++F +F ++ + P+ TL V+ A
Sbjct: 286 SARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEM-EKTGVSPDAGTLSTVLSAC 344
Query: 135 ARPVQFRVGQAIHG-----MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWN 189
+G+ I + ++ ++ L+ Y CG + A VF + K+ +WN
Sbjct: 345 GSVGALELGKQIETHASELSLQHNIYVATGLVDMYGKCGRVEEALRVFEAMPVKNEATWN 404
Query: 190 SMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230
+MI+ + G ++A+ L+ M +V P ++T + VLSAC
Sbjct: 405 AMITAYAHQGHAKEALLLFDRM---SVPPSDITFIGVLSAC 442
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 168 GDLAMAYCVFVMIGKKDVVSWNSMISGFVEG-GFFEKAIELYREMEVENVKPDEVTMVVV 226
GD + +F + + + S+N MI G E A+ LYR M+ +KPD+ T V
Sbjct: 79 GDFNYSSFLFSVTEEPNHYSFNYMIRGLTNTWNDHEAALSLYRRMKFSGLKPDKFTYNFV 138
Query: 227 LSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
ACAK ++ G V S + K G++ D+
Sbjct: 139 FIACAKLEEIGVGRSVHSSLFKVGLERDV 167
>sp|Q9FX24|PPR71_ARATH Pentatricopeptide repeat-containing protein At1g34160
OS=Arabidopsis thaliana GN=PCMP-H68 PE=2 SV=2
Length = 581
Score = 116 bits (291), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 111/213 (52%), Gaps = 12/213 (5%)
Query: 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
Q+K++ + L+ F + S+L CA+S F L +A ++F IP+P WN +IR
Sbjct: 18 QIKQLQSHFLTAGHFQSSFLRSRLLERCAISPFGDLSFAVQIFRYIPKPLTNDWNAIIRG 77
Query: 98 YSSSDEPIQSF-----MIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH----- 147
++ S P +F M+ ++ + T F +KA AR + +H
Sbjct: 78 FAGSSHPSLAFSWYRSMLQQSSSSSAICRVDALTCSFTLKACARALCSSAMDQLHCQINR 137
Query: 148 -GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIE 206
G+ D L+ + +L+ Y+ GDL AY +F + +DV SWN++I+G V G +A+E
Sbjct: 138 RGLSADSLLCT-TLLDAYSKNGDLISAYKLFDEMPVRDVASWNALIAGLVSGNRASEAME 196
Query: 207 LYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
LY+ ME E ++ EVT+V L AC+ D++ G
Sbjct: 197 LYKRMETEGIRRSEVTVVAALGACSHLGDVKEG 229
Score = 103 bits (257), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 116/219 (52%), Gaps = 5/219 (2%)
Query: 39 LKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAY 98
+ ++H Q+ D + L A S L A K+FD++P ++ +WN LI
Sbjct: 128 MDQLHCQINRRGLSADSLLCTTLLD--AYSKNGDLISAYKLFDEMPVRDVASWNALIAGL 185
Query: 99 SSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAI-HGMFEDDLVIS 157
S + ++ ++ ++ +E T+ + A + + G+ I HG D++++S
Sbjct: 186 VSGNRASEAMELYKRM-ETEGIRRSEVTVVAALGACSHLGDVKEGENIFHGYSNDNVIVS 244
Query: 158 NSLIHFYAVCGDLAMAYCVFVM-IGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENV 216
N+ I Y+ CG + AY VF GKK VV+WN+MI+GF G +A+E++ ++E +
Sbjct: 245 NAAIDMYSKCGFVDKAYQVFEQFTGKKSVVTWNTMITGFAVHGEAHRALEIFDKLEDNGI 304
Query: 217 KPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
KPD+V+ + L+AC +E+G+ V +++ G++ ++
Sbjct: 305 KPDDVSYLAALTACRHAGLVEYGLSVFNNMACKGVERNM 343
>sp|Q9ZUT5|PP191_ARATH Pentatricopeptide repeat-containing protein At2g37310
OS=Arabidopsis thaliana GN=PCMP-E49 PE=2 SV=1
Length = 657
Score = 116 bits (291), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 78/255 (30%), Positives = 132/255 (51%), Gaps = 20/255 (7%)
Query: 21 TVNNGHQRH--PHFLTNQKQLK--RIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYA 76
V+ G H HF ++ L ++HA+++ D + ASKL + + A
Sbjct: 19 AVDGGAYGHLIQHFTRHRLPLHVLQLHARIVVFSIKPDNFLASKLIS--FYTRQDRFRQA 76
Query: 77 RKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYF-----PNEFTLPFVI 131
+FD+I N +++N L+ AY+S + +F +FL + +S Y P+ ++ V+
Sbjct: 77 LHVFDEITVRNAFSYNALLIAYTSREMYFDAFSLFLSWIGSSCYSSDAARPDSISISCVL 136
Query: 132 KAAARPVQFRVGQ--------AIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKK 183
KA + F +G I G F+ D+ + N +I +Y C ++ A VF + ++
Sbjct: 137 KALSGCDDFWLGSLARQVHGFVIRGGFDSDVFVGNGMITYYTKCDNIESARKVFDEMSER 196
Query: 184 DVVSWNSMISGFVEGGFFEKAIELYREM-EVENVKPDEVTMVVVLSACAKKRDLEFGIWV 242
DVVSWNSMISG+ + G FE ++Y+ M + KP+ VT++ V AC + DL FG+ V
Sbjct: 197 DVVSWNSMISGYSQSGSFEDCKKMYKAMLACSDFKPNGVTVISVFQACGQSSDLIFGLEV 256
Query: 243 SSHIEKNGIKMDLTF 257
+ +N I+MDL+
Sbjct: 257 HKKMIENHIQMDLSL 271
Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 97/181 (53%), Gaps = 13/181 (7%)
Query: 40 KRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
+++H ++ F D + + + +T C ++E ARK+FD++ + ++ +WN++I
Sbjct: 152 RQVHGFVIRGGFDSDVFVGNGMITYYTKC-----DNIESARKVFDEMSERDVVSWNSMIS 206
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG-MFED--- 152
YS S ++ ++ S + PN T+ V +A + G +H M E+
Sbjct: 207 GYSQSGSFEDCKKMYKAMLACSDFKPNGVTVISVFQACGQSSDLIFGLEVHKKMIENHIQ 266
Query: 153 -DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
DL + N++I FYA CG L A +F + +KD V++ ++ISG++ G ++A+ L+ EM
Sbjct: 267 MDLSLCNAVIGFYAKCGSLDYARALFDEMSEKDSVTYGAIISGYMAHGLVKEAMALFSEM 326
Query: 212 E 212
E
Sbjct: 327 E 327
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 77/165 (46%), Gaps = 6/165 (3%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
A +F ++ L TWN +I ++ + F +++ PN TL ++ +
Sbjct: 319 AMALFSEMESIGLSTWNAMISGLMQNNHHEEVINSFREMIRCGSR-PNTVTLSSLLPSLT 377
Query: 136 RPVQFRVGQAIHGMF-----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
+ G+ IH ++++ ++ S+I YA G L A VF + +++W +
Sbjct: 378 YSSNLKGGKEIHAFAIRNGADNNIYVTTSIIDNYAKLGFLLGAQRVFDNCKDRSLIAWTA 437
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRD 235
+I+ + G + A L+ +M+ KPD+VT+ VLSA A D
Sbjct: 438 IITAYAVHGDSDSACSLFDQMQCLGTKPDDVTLTAVLSAFAHSGD 482
>sp|Q9CA54|PP122_ARATH Pentatricopeptide repeat-containing protein At1g74630
OS=Arabidopsis thaliana GN=PCMP-H71 PE=2 SV=1
Length = 643
Score = 116 bits (291), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 120/283 (42%), Gaps = 67/283 (23%)
Query: 35 NQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTL 94
N + L +IH + D Y KL CA+S +L YAR++ P+P+ + +NTL
Sbjct: 17 NLRALTQIHGLFIKYGVDTDSYFTGKLILHCAISISDALPYARRLLLCFPEPDAFMFNTL 76
Query: 95 IRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVG-----QAIHGM 149
+R YS SDEP S +F++++ FP+ F+ FVIKA R G QA+
Sbjct: 77 VRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGFQMHCQALKHG 136
Query: 150 FEDDLVISNSLIHFYAVCG-------------------------------DLAMAYCVFV 178
E L + +LI Y CG D+A A +F
Sbjct: 137 LESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFRGNDVAGAREIFD 196
Query: 179 MIGKKDVVSWNSMISGFVEGGFFEKAIEL------------------------------- 207
+ ++ SWN M++G+++ G E A +
Sbjct: 197 KMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESFLY 256
Query: 208 YREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
+RE++ + P+EV++ VLSAC++ EFG + +EK G
Sbjct: 257 FRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAG 299
Score = 98.6 bits (244), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 96/175 (54%), Gaps = 7/175 (4%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
LE A+++F ++P + +W+T+I + + +SF+ F +L + PNE +L V
Sbjct: 217 GELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESFLYFREL-QRAGMSPNEVSLTGV 275
Query: 131 IKAAARPVQFRVGQAIHGMFEDD-----LVISNSLIHFYAVCGDLAMAYCVF-VMIGKKD 184
+ A ++ F G+ +HG E + ++N+LI Y+ CG++ MA VF M K+
Sbjct: 276 LSACSQSGSFEFGKILHGFVEKAGYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRC 335
Query: 185 VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+VSW SMI+G G E+A+ L+ EM V PD ++ + +L AC+ +E G
Sbjct: 336 IVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGLIEEG 390
>sp|Q9LSB8|PP235_ARATH Putative pentatricopeptide repeat-containing protein At3g15930
OS=Arabidopsis thaliana GN=PCMP-E51 PE=3 SV=2
Length = 687
Score = 116 bits (290), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/249 (29%), Positives = 125/249 (50%), Gaps = 10/249 (4%)
Query: 19 TLTVNNGHQRHPHFLTNQK---QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEY 75
T +++N + R L K Q K++H+Q ++ +P KLF + Y
Sbjct: 27 TESISNDYSRFISILGVCKTTDQFKQLHSQSITRGVAPNPTFQKKLFVFWCSRLGGHVSY 86
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
A K+F +IP+P++ WN +I+ +S D + ++L ++ P+ T PF++
Sbjct: 87 AYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNML-KEGVTPDSHTFPFLLNGLK 145
Query: 136 RPV-QFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWN 189
R G+ +H +L + N+L+ Y++CG + MA VF K+DV SWN
Sbjct: 146 RDGGALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWN 205
Query: 190 SMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249
MISG+ +E++IEL EME V P VT+++VLSAC+K +D + V ++ +
Sbjct: 206 LMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSEC 265
Query: 250 GIKMDLTFE 258
+ L E
Sbjct: 266 KTEPSLRLE 274
Score = 112 bits (280), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 73/271 (26%), Positives = 131/271 (48%), Gaps = 48/271 (17%)
Query: 24 NGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSAS---KLFTPCALSTFSSLEYARKMF 80
NG +R L K+L H ++ + Y + K+++ C L ++ AR +F
Sbjct: 142 NGLKRDGGALACGKKL---HCHVVKFGLGSNLYVQNALVKMYSLCGL-----MDMARGVF 193
Query: 81 DQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQF 140
D+ + ++++WN +I Y+ E +S + +++ N P TL V+ A ++
Sbjct: 194 DRRCKEDVFSWNLMISGYNRMKEYEESIELLVEMERN-LVSPTSVTLLLVLSACSKVKDK 252
Query: 141 RVGQAIHGMF-----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGF 195
+ + +H E L + N+L++ YA CG++ +A +F + +DV+SW S++ G+
Sbjct: 253 DLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGY 312
Query: 196 VE-------------------------------GGFFEKAIELYREMEVENVKPDEVTMV 224
VE G F +++E++REM+ + PDE TMV
Sbjct: 313 VERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMV 372
Query: 225 VVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
VL+ACA LE G W+ ++I+KN IK D+
Sbjct: 373 SVLTACAHLGSLEIGEWIKTYIDKNKIKNDV 403
Score = 87.8 bits (216), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 90/165 (54%), Gaps = 6/165 (3%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
+L+ AR FDQ+P + +W +I Y + +S IF ++ ++ P+EFT+ V
Sbjct: 316 GNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREM-QSAGMIPDEFTMVSV 374
Query: 131 IKAAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185
+ A A +G+ I ++D+V+ N+LI Y CG A VF + ++D
Sbjct: 375 LTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDK 434
Query: 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230
+W +M+ G G ++AI+++ +M+ +++PD++T + VLSAC
Sbjct: 435 FTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSAC 479
>sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600
OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1
Length = 697
Score = 114 bits (286), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 95/180 (52%), Gaps = 12/180 (6%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130
+S + AR MF ++ + N+ +WN LI Y+ + E ++ +F L+ P ++ +
Sbjct: 334 ASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFC-LLKRESVCPTHYSFANI 392
Query: 131 IKAAARPVQFRVGQAIH-----------GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVM 179
+KA A + +G H EDD+ + NSLI Y CG + Y VF
Sbjct: 393 LKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRK 452
Query: 180 IGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+ ++D VSWN+MI GF + G+ +A+EL+REM KPD +TM+ VLSAC +E G
Sbjct: 453 MMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEG 512
Score = 103 bits (258), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 65/246 (26%), Positives = 123/246 (50%), Gaps = 37/246 (15%)
Query: 39 LKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLI--- 95
++ +HA ++ + F + + ++L A S SLE R++FD++PQ N+YTWN+++
Sbjct: 39 VRYVHASVIKSGFSNEIFIQNRLID--AYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGL 96
Query: 96 -------------RAYSSSDEPIQSFMI--------------FLQLVYNSPYFPNEFTLP 128
R+ D+ + M+ + +++ + NE++
Sbjct: 97 TKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFA 156
Query: 129 FVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKK 183
V+ A + G +H + F D+ I ++L+ Y+ CG++ A VF +G +
Sbjct: 157 SVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDR 216
Query: 184 DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVS 243
+VVSWNS+I+ F + G +A+++++ M V+PDEVT+ V+SACA ++ G V
Sbjct: 217 NVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVH 276
Query: 244 SHIEKN 249
+ KN
Sbjct: 277 GRVVKN 282
Score = 103 bits (258), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 125/260 (48%), Gaps = 46/260 (17%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLY 89
L + + ++H+ + + F D Y S L ++ C ++ A+++FD++ N+
Sbjct: 165 LNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCG-----NVNDAQRVFDEMGDRNVV 219
Query: 90 TWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM 149
+WN+LI + + +++ +F Q++ S P+E TL VI A A +VGQ +HG
Sbjct: 220 SWNSLITCFEQNGPAVEALDVF-QMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGR 278
Query: 150 ------FEDDLVISNSLIHFYAVCGDL-------------------------AMAYC--- 175
+D+++SN+ + YA C + AMA
Sbjct: 279 VVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKA 338
Query: 176 ---VFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAK 232
+F + +++VVSWN++I+G+ + G E+A+ L+ ++ E+V P + +L ACA
Sbjct: 339 ARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACAD 398
Query: 233 KRDLEFGIWVSSHIEKNGIK 252
+L G+ H+ K+G K
Sbjct: 399 LAELHLGMQAHVHVLKHGFK 418
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 64/149 (42%), Gaps = 31/149 (20%)
Query: 132 KAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSM 191
K +A V++ I F +++ I N LI Y+ CG L VF + ++++ +WNS+
Sbjct: 33 KLSAIYVRYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSV 92
Query: 192 ISGFVEGGFFEKAIELYRE-------------------------------MEVENVKPDE 220
++G + GF ++A L+R M E +E
Sbjct: 93 VTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNE 152
Query: 221 VTMVVVLSACAKKRDLEFGIWVSSHIEKN 249
+ VLSAC+ D+ G+ V S I K+
Sbjct: 153 YSFASVLSACSGLNDMNKGVQVHSLIAKS 181
Score = 35.8 bits (81), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 41/222 (18%), Positives = 84/222 (37%), Gaps = 39/222 (17%)
Query: 25 GHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIP 84
G Q H H L + + Q D F S ++ C +E +F ++
Sbjct: 405 GMQAHVHVLKHGFKF-----QSGEEDDIFVGNSLIDMYVKCGC-----VEEGYLVFRKMM 454
Query: 85 QPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQ 144
+ + +WN +I ++ + ++ +F +++ S P+ T+ V+ A G+
Sbjct: 455 ERDCVSWNAMIIGFAQNGYGNEALELFREML-ESGEKPDHITMIGVLSACGHAGFVEEGR 513
Query: 145 AIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKA 204
D ++ H+ C+ ++G+ GF E+A
Sbjct: 514 HYFSSMTRDFGVAPLRDHYT----------CMVDLLGR---------------AGFLEEA 548
Query: 205 IELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
+ EM ++ PD V +L+AC R++ G +V+ +
Sbjct: 549 KSMIEEMPMQ---PDSVIWGSLLAACKVHRNITLGKYVAEKL 587
>sp|Q9LND4|PPR14_ARATH Pentatricopeptide repeat-containing protein At1g06140,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E61 PE=2
SV=1
Length = 558
Score = 114 bits (286), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 106/184 (57%), Gaps = 11/184 (5%)
Query: 61 LFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPY 120
++ C L L+ ARK+F+ N+ W TLI ++ + +++F +F Q++ S
Sbjct: 255 MYVKCRL-----LDNARKLFETSVDRNVVMWTTLISGFAKCERAVEAFDLFRQMLRES-I 308
Query: 121 FPNEFTLPFVIKAAARPVQFRVGQAIHGMF-----EDDLVISNSLIHFYAVCGDLAMAYC 175
PN+ TL ++ + + R G+++HG E D V S I YA CG++ MA
Sbjct: 309 LPNQCTLAAILVSCSSLGSLRHGKSVHGYMIRNGIEMDAVNFTSFIDMYARCGNIQMART 368
Query: 176 VFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRD 235
VF M+ +++V+SW+SMI+ F G FE+A++ + +M+ +NV P+ VT V +LSAC+ +
Sbjct: 369 VFDMMPERNVISWSSMINAFGINGLFEEALDCFHKMKSQNVVPNSVTFVSLLSACSHSGN 428
Query: 236 LEFG 239
++ G
Sbjct: 429 VKEG 432
Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 106/219 (48%), Gaps = 9/219 (4%)
Query: 42 IHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS 101
IH + D Y A L A ++E A+K+FD+IP N W L++ Y
Sbjct: 131 IHGLAMKNGLDKDDYVAPSLVEMYA--QLGTMESAQKVFDEIPVRNSVLWGVLMKGYLKY 188
Query: 102 DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM------FEDDLV 155
+ + F +F L+ ++ + TL ++KA +VG+ +HG+ +
Sbjct: 189 SKDPEVFRLFC-LMRDTGLALDALTLICLVKACGNVFAGKVGKCVHGVSIRRSFIDQSDY 247
Query: 156 ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVEN 215
+ S+I Y C L A +F ++VV W ++ISGF + +A +L+R+M E+
Sbjct: 248 LQASIIDMYVKCRLLDNARKLFETSVDRNVVMWTTLISGFAKCERAVEAFDLFRQMLRES 307
Query: 216 VKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
+ P++ T+ +L +C+ L G V ++ +NGI+MD
Sbjct: 308 ILPNQCTLAAILVSCSSLGSLRHGKSVHGYMIRNGIEMD 346
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 92/203 (45%), Gaps = 16/203 (7%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIP--QPNLYTWNTLIRA 97
+++HA+++ F + S L A + L++A F++IP + N ++WNT++
Sbjct: 24 QQVHAKVIIHGFEDEVVLGSSLTN--AYIQSNRLDFATSSFNRIPCWKRNRHSWNTILSG 81
Query: 98 YSSSDEPIQSFMIFLQLVYNSPY----FPNEFTLPFVIKAAARPVQFRVGQAIHGM---- 149
YS S S ++ L YN + F L F IKA G IHG+
Sbjct: 82 YSKSKTCCYSDVLLL---YNRMRRHCDGVDSFNLVFAIKACVGLGLLENGILIHGLAMKN 138
Query: 150 -FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY 208
+ D ++ SL+ YA G + A VF I ++ V W ++ G+++ + L+
Sbjct: 139 GLDKDDYVAPSLVEMYAQLGTMESAQKVFDEIPVRNSVLWGVLMKGYLKYSKDPEVFRLF 198
Query: 209 REMEVENVKPDEVTMVVVLSACA 231
M + D +T++ ++ AC
Sbjct: 199 CLMRDTGLALDALTLICLVKACG 221
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 5/113 (4%)
Query: 146 IHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMI--GKKDVVSWNSMISGFVEGG--FF 201
IHG FED++V+ +SL + Y L A F I K++ SWN+++SG+ + +
Sbjct: 32 IHG-FEDEVVLGSSLTNAYIQSNRLDFATSSFNRIPCWKRNRHSWNTILSGYSKSKTCCY 90
Query: 202 EKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
+ LY M D +V + AC LE GI + KNG+ D
Sbjct: 91 SDVLLLYNRMRRHCDGVDSFNLVFAIKACVGLGLLENGILIHGLAMKNGLDKD 143
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/117 (18%), Positives = 51/117 (43%), Gaps = 15/117 (12%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASK---LFTPCALSTFSSLEYARKMFDQIPQPNLY 89
L + + K +H M+ D + + ++ C +++ AR +FD +P+ N+
Sbjct: 325 LGSLRHGKSVHGYMIRNGIEMDAVNFTSFIDMYARCG-----NIQMARTVFDMMPERNVI 379
Query: 90 TWNTLIRAYSSS---DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVG 143
+W+++I A+ + +E + F + + PN T ++ A + + G
Sbjct: 380 SWSSMINAFGINGLFEEALDCF----HKMKSQNVVPNSVTFVSLLSACSHSGNVKEG 432
>sp|Q9SS97|PP205_ARATH Putative pentatricopeptide repeat-containing protein At3g01580
OS=Arabidopsis thaliana GN=PCMP-E87 PE=3 SV=2
Length = 660
Score = 112 bits (281), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 106/195 (54%), Gaps = 8/195 (4%)
Query: 70 FSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPF 129
FSS AR+MF ++ + +LY WNTL+++ S ++ + + ++ P+ FTLP
Sbjct: 7 FSSSVDARQMFGEMTKRSLYQWNTLLKSLSR-EKQWEEVLYHFSHMFRDEEKPDNFTLPV 65
Query: 130 VIKAAARPVQFRVGQAIHGMFE------DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKK 183
+KA + G+ IHG + DL + +SLI+ Y CG + A +F + K
Sbjct: 66 ALKACGELREVNYGEMIHGFVKKDVTLGSDLYVGSSLIYMYIKCGRMIEALRMFDELEKP 125
Query: 184 DVVSWNSMISGFVEGGFFEKAIELYREMEV-ENVKPDEVTMVVVLSACAKKRDLEFGIWV 242
D+V+W+SM+SGF + G +A+E +R M + +V PD VT++ ++SAC K + G V
Sbjct: 126 DIVTWSSMVSGFEKNGSPYQAVEFFRRMVMASDVTPDRVTLITLVSACTKLSNSRLGRCV 185
Query: 243 SSHIEKNGIKMDLTF 257
+ + G DL+
Sbjct: 186 HGFVIRRGFSNDLSL 200
Score = 108 bits (271), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 98/169 (57%), Gaps = 5/169 (2%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
A +MFD++ +P++ TW++++ + + P Q+ F ++V S P+ TL ++ A
Sbjct: 115 ALRMFDELEKPDIVTWSSMVSGFEKNGSPYQAVEFFRRMVMASDVTPDRVTLITLVSACT 174
Query: 136 RPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
+ R+G+ +HG F +DL + NSL++ YA A +F MI +KDV+SW++
Sbjct: 175 KLSNSRLGRCVHGFVIRRGFSNDLSLVNSLLNCYAKSRAFKEAVNLFKMIAEKDVISWST 234
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
+I+ +V+ G +A+ ++ +M + +P+ T++ VL ACA DLE G
Sbjct: 235 VIACYVQNGAAAEALLVFNDMMDDGTEPNVATVLCVLQACAAAHDLEQG 283
Score = 88.2 bits (217), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 110/224 (49%), Gaps = 9/224 (4%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWN 92
L+N + + +H ++ F D + L A S + + A +F I + ++ +W+
Sbjct: 176 LSNSRLGRCVHGFVIRRGFSNDLSLVNSLLNCYAKS--RAFKEAVNLFKMIAEKDVISWS 233
Query: 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM--- 149
T+I Y + ++ ++F ++ + PN T+ V++A A G+ H +
Sbjct: 234 TVIACYVQNGAAAEALLVFNDMMDDGTE-PNVATVLCVLQACAAAHDLEQGRKTHELAIR 292
Query: 150 --FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIEL 207
E ++ +S +L+ Y C AY VF I +KDVVSW ++ISGF G ++IE
Sbjct: 293 KGLETEVKVSTALVDMYMKCFSPEEAYAVFSRIPRKDVVSWVALISGFTLNGMAHRSIEE 352
Query: 208 YREMEVE-NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
+ M +E N +PD + MV VL +C++ LE S++ K G
Sbjct: 353 FSIMLLENNTRPDAILMVKVLGSCSELGFLEQAKCFHSYVIKYG 396
Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 80/164 (48%), Gaps = 6/164 (3%)
Query: 74 EYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKA 133
E A +F +IP+ ++ +W LI ++ + +S F ++ + P+ + V+ +
Sbjct: 316 EEAYAVFSRIPRKDVVSWVALISGFTLNGMAHRSIEEFSIMLLENNTRPDAILMVKVLGS 375
Query: 134 AARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSW 188
+ + H F+ + I SL+ Y+ CG L A VF I KD V W
Sbjct: 376 CSELGFLEQAKCFHSYVIKYGFDSNPFIGASLVELYSRCGSLGNASKVFNGIALKDTVVW 435
Query: 189 NSMISGFVEGGFFEKAIELYREM-EVENVKPDEVTMVVVLSACA 231
S+I+G+ G KA+E + M + VKP+EVT + +LSAC+
Sbjct: 436 TSLITGYGIHGKGTKALETFNHMVKSSEVKPNEVTFLSILSACS 479
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 62/137 (45%), Gaps = 9/137 (6%)
Query: 37 KQLKRIHAQMLSTDFFFDPY---SASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
+Q K H+ ++ F +P+ S +L++ C SL A K+F+ I + W +
Sbjct: 383 EQAKCFHSYVIKYGFDSNPFIGASLVELYSRCG-----SLGNASKVFNGIALKDTVVWTS 437
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDD 153
LI Y + ++ F +V +S PNE T ++ A + G I + +D
Sbjct: 438 LITGYGIHGKGTKALETFNHMVKSSEVKPNEVTFLSILSACSHAGLIHEGLRIFKLMVND 497
Query: 154 LVISNSLIHFYAVCGDL 170
++ +L H YAV DL
Sbjct: 498 YRLAPNLEH-YAVLVDL 513
>sp|Q9LIE7|PP246_ARATH Pentatricopeptide repeat-containing protein At3g22150,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-E95 PE=2
SV=1
Length = 820
Score = 112 bits (280), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 110/209 (52%), Gaps = 8/209 (3%)
Query: 54 DPYSASKLFTPCALSTFSSL---EYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMI 110
D Y A+S ++ L E +R++FD + N+ WNT+I Y +D ++S +
Sbjct: 245 DEYVKDLFVVSSAISMYAELGDIESSRRVFDSCVERNIEVWNTMIGVYVQNDCLVESIEL 304
Query: 111 FLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDD-----LVISNSLIHFYA 165
FL+ + + +E T A + Q +G+ HG + +VI NSL+ Y+
Sbjct: 305 FLEAIGSKEIVSDEVTYLLAASAVSALQQVELGRQFHGFVSKNFRELPIVIVNSLMVMYS 364
Query: 166 VCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVV 225
CG + ++ VF+ + ++DVVSWN+MIS FV+ G ++ + L EM+ + K D +T+
Sbjct: 365 RCGSVHKSFGVFLSMRERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFKIDYITVTA 424
Query: 226 VLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
+LSA + R+ E G + + + GI+ +
Sbjct: 425 LLSAASNLRNKEIGKQTHAFLIRQGIQFE 453
Score = 84.0 bits (206), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 111/223 (49%), Gaps = 21/223 (9%)
Query: 25 GHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIP 84
G Q H + Q + +++ + D YS S L + F YA + DQ
Sbjct: 438 GKQTHAFLIRQGIQFEGMNS------YLIDMYSKSGLIR-ISQKLFEGSGYAER--DQA- 487
Query: 85 QPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQ 144
TWN++I Y+ + ++F++F +++ + PN T+ ++ A ++ +G+
Sbjct: 488 -----TWNSMISGYTQNGHTEKTFLVFRKMLEQNIR-PNAVTVASILPACSQIGSVDLGK 541
Query: 145 AIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGG 199
+HG + ++ ++++L+ Y+ G + A +F +++ V++ +MI G+ + G
Sbjct: 542 QLHGFSIRQYLDQNVFVASALVDMYSKAGAIKYAEDMFSQTKERNSVTYTTMILGYGQHG 601
Query: 200 FFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWV 242
E+AI L+ M+ +KPD +T V VLSAC+ ++ G+ +
Sbjct: 602 MGERAISLFLSMQESGIKPDAITFVAVLSACSYSGLIDEGLKI 644
Score = 74.7 bits (182), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 89/178 (50%), Gaps = 16/178 (8%)
Query: 74 EYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFP-NEFTLPFVIK 132
+ AR++FD IP+P WNT+I + ++ P ++ + + ++ +P+ + +T +K
Sbjct: 56 QLARQLFDAIPKPTTVLWNTIIIGFICNNLPHEALLFYSRMKKTAPFTNCDAYTYSSTLK 115
Query: 133 AAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYC--------VFVM 179
A A + G+A+H + V+ NSL++ Y C L C VF
Sbjct: 116 ACAETKNLKAGKAVHCHLIRCLQNSSRVVHNSLMNMYVSC--LNAPDCFEYDVVRKVFDN 173
Query: 180 IGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLE 237
+ +K+VV+WN++IS +V+ G +A + M VKP V+ V V A + R ++
Sbjct: 174 MRRKNVVAWNTLISWYVKTGRNAEACRQFGIMMRMEVKPSPVSFVNVFPAVSISRSIK 231
Score = 35.0 bits (79), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 168 GDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVEN--VKPDEVTMVV 225
G+ +A +F I K V WN++I GF+ +A+ Y M+ D T
Sbjct: 53 GNPQLARQLFDAIPKPTTVLWNTIIIGFICNNLPHEALLFYSRMKKTAPFTNCDAYTYSS 112
Query: 226 VLSACAKKRDLEFGIWVSSHI 246
L ACA+ ++L+ G V H+
Sbjct: 113 TLKACAETKNLKAGKAVHCHL 133
>sp|Q9MAT2|PPR10_ARATH Pentatricopeptide repeat-containing protein At1g04840
OS=Arabidopsis thaliana GN=PCMP-H64 PE=2 SV=1
Length = 665
Score = 111 bits (278), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 94/173 (54%), Gaps = 6/173 (3%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
L A+++F+ +P+ N+ +W TLI +S + + + + +++ PNE+T+ V+
Sbjct: 243 LNRAKQLFELMPEKNVVSWTTLINGFSQTGDYETAISTYFEML-EKGLKPNEYTIAAVLS 301
Query: 133 AAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
A ++ G IHG D D I +L+ YA CG+L A VF + KD++S
Sbjct: 302 ACSKSGALGSGIRIHGYILDNGIKLDRAIGTALVDMYAKCGELDCAATVFSNMNHKDILS 361
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
W +MI G+ G F +AI+ +R+M KPDEV + VL+AC +++ G+
Sbjct: 362 WTAMIQGWAVHGRFHQAIQCFRQMMYSGEKPDEVVFLAVLTACLNSSEVDLGL 414
Score = 82.4 bits (202), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 73/299 (24%), Positives = 126/299 (42%), Gaps = 83/299 (27%)
Query: 31 HFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYT 90
H + L+ +HAQ+L +A C+ S S +Y+ +F + N +
Sbjct: 37 HACKDTASLRHVHAQILRRGVLSSRVAAQ--LVSCS-SLLKSPDYSLSIFRNSEERNPFV 93
Query: 91 WNTLIRAYSSS---DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFR-VGQAI 146
N LIR + + + ++ F++ L+L P+ T PFV+K+ ++ + FR +G+A+
Sbjct: 94 LNALIRGLTENARFESSVRHFILMLRLGVK----PDRLTFPFVLKSNSK-LGFRWLGRAL 148
Query: 147 HG--------------------------------MFEDD--------LVISNSLIHFYAV 166
H +FE+ ++I N LI+ Y
Sbjct: 149 HAATLKNFVDCDSFVRLSLVDMYAKTGQLKHAFQVFEESPDRIKKESILIWNVLINGYCR 208
Query: 167 CGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGF-------------------------- 200
D+ MA +F + +++ SW+++I G+V+ G
Sbjct: 209 AKDMHMATTLFRSMPERNSGSWSTLIKGYVDSGELNRAKQLFELMPEKNVVSWTTLINGF 268
Query: 201 -----FEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
+E AI Y EM + +KP+E T+ VLSAC+K L GI + +I NGIK+D
Sbjct: 269 SQTGDYETAISTYFEMLEKGLKPNEYTIAAVLSACSKSGALGSGIRIHGYILDNGIKLD 327
>sp|Q9FLZ9|PP405_ARATH Pentatricopeptide repeat-containing protein At5g39350
OS=Arabidopsis thaliana GN=PCMP-E16 PE=2 SV=1
Length = 677
Score = 111 bits (278), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 73/246 (29%), Positives = 119/246 (48%), Gaps = 11/246 (4%)
Query: 11 IPRHPNPTTLTVNNGHQRHPHFLTNQK--QLKRIHAQMLSTDFFFDPYSASKLFTPCALS 68
+ R N +V HF Q + K +H ++ T + S L AL
Sbjct: 4 VLRRANNALSSVKQYQSLLNHFAATQSISKTKALHCHVI-TGGRVSGHILSTLSVTYALC 62
Query: 69 TFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNS-PYFPNEFTL 127
+ YARK+F+++PQ +L ++N +IR Y + +F+++V P+ +T
Sbjct: 63 --GHITYARKLFEEMPQSSLLSYNIVIRMYVREGLYHDAISVFIRMVSEGVKCVPDGYTY 120
Query: 128 PFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
PFV KAA ++G +HG F D + N+L+ Y G + MA VF ++
Sbjct: 121 PFVAKAAGELKSMKLGLVVHGRILRSWFGRDKYVQNALLAMYMNFGKVEMARDVFDVMKN 180
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWV 242
+DV+SWN+MISG+ G+ A+ ++ M E+V D T+V +L C +DLE G V
Sbjct: 181 RDVISWNTMISGYYRNGYMNDALMMFDWMVNESVDLDHATIVSMLPVCGHLKDLEMGRNV 240
Query: 243 SSHIEK 248
+E+
Sbjct: 241 HKLVEE 246
Score = 99.8 bits (247), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 99/195 (50%), Gaps = 8/195 (4%)
Query: 42 IHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS 101
+H ++L + F D Y + L F +E AR +FD + ++ +WNT+I Y +
Sbjct: 139 VHGRILRSWFGRDKYVQNALLA--MYMNFGKVEMARDVFDVMKNRDVISWNTMISGYYRN 196
Query: 102 DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFE-----DDLVI 156
+ M+F +V N + T+ ++ +G+ +H + E D + +
Sbjct: 197 GYMNDALMMFDWMV-NESVDLDHATIVSMLPVCGHLKDLEMGRNVHKLVEEKRLGDKIEV 255
Query: 157 SNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENV 216
N+L++ Y CG + A VF + ++DV++W MI+G+ E G E A+EL R M+ E V
Sbjct: 256 KNALVNMYLKCGRMDEARFVFDRMERRDVITWTCMINGYTEDGDVENALELCRLMQFEGV 315
Query: 217 KPDEVTMVVVLSACA 231
+P+ VT+ ++S C
Sbjct: 316 RPNAVTIASLVSVCG 330
Score = 78.6 bits (192), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 90/183 (49%), Gaps = 6/183 (3%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
++ AR +FD++ + ++ TW +I Y+ D +++ + +L+ PN T+ ++
Sbjct: 269 MDEARFVFDRMERRDVITWTCMINGYTE-DGDVENALELCRLMQFEGVRPNAVTIASLVS 327
Query: 133 AAARPVQFRVGQAIHG-----MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
++ G+ +HG D++I SLI YA C + + + VF K
Sbjct: 328 VCGDALKVNDGKCLHGWAVRQQVYSDIIIETSLISMYAKCKRVDLCFRVFSGASKYHTGP 387
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIE 247
W+++I+G V+ A+ L++ M E+V+P+ T+ +L A A DL + + ++
Sbjct: 388 WSAIIAGCVQNELVSDALGLFKRMRREDVEPNIATLNSLLPAYAALADLRQAMNIHCYLT 447
Query: 248 KNG 250
K G
Sbjct: 448 KTG 450
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 73/159 (45%), Gaps = 10/159 (6%)
Query: 91 WNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM- 149
W+ +I A +E + + + + PN TL ++ A A R IH
Sbjct: 388 WSAII-AGCVQNELVSDALGLFKRMRREDVEPNIATLNSLLPAYAALADLRQAMNIHCYL 446
Query: 150 ----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKK----DVVSWNSMISGFVEGGFF 201
F L + L+H Y+ CG L A+ +F I +K DVV W ++ISG+ G
Sbjct: 447 TKTGFMSSLDAATGLVHVYSKCGTLESAHKIFNGIQEKHKSKDVVLWGALISGYGMHGDG 506
Query: 202 EKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
A++++ EM V P+E+T L+AC+ +E G+
Sbjct: 507 HNALQVFMEMVRSGVTPNEITFTSALNACSHSGLVEEGL 545
>sp|P0C8Q7|PP369_ARATH Pentatricopeptide repeat-containing protein At5g08305
OS=Arabidopsis thaliana GN=PCMP-E105 PE=2 SV=1
Length = 534
Score = 111 bits (278), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 73/253 (28%), Positives = 125/253 (49%), Gaps = 38/253 (15%)
Query: 31 HFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYT 90
H + +L +IH +++ + S+ + ALS+ ++YA K ++ P Y
Sbjct: 16 HQCKSMSELYKIHTLLITLGLSEEEPFVSQTLSFSALSSSGDVDYAYKFLSKLSDPPNYG 75
Query: 91 WNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIH--- 147
WN +IR +S+S P +S +++Q++ P+ T PF++K+++R ++G ++H
Sbjct: 76 WNFVIRGFSNSRNPEKSISVYIQML-RFGLLPDHMTYPFLMKSSSRLSNRKLGGSLHCSV 134
Query: 148 --GMFEDDLVISNSLIHFY-------------------------------AVCGDLAMAY 174
E DL I N+LIH Y A GD+ A
Sbjct: 135 VKSGLEWDLFICNTLIHMYGSFRDQASARKLFDEMPHKNLVTWNSILDAYAKSGDVVSAR 194
Query: 175 CVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE-MEVENVKPDEVTMVVVLSACAKK 233
VF + ++DVV+W+SMI G+V+ G + KA+E++ + M + + K +EVTMV V+ ACA
Sbjct: 195 LVFDEMSERDVVTWSSMIDGYVKRGEYNKALEIFDQMMRMGSSKANEVTMVSVICACAHL 254
Query: 234 RDLEFGIWVSSHI 246
L G V +I
Sbjct: 255 GALNRGKTVHRYI 267
Score = 99.8 bits (247), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 108/237 (45%), Gaps = 40/237 (16%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWN 92
L+N+K +H ++ + +D + + L +F ARK+FD++P NL TWN
Sbjct: 121 LSNRKLGGSLHCSVVKSGLEWDLFICNTLIH--MYGSFRDQASARKLFDEMPHKNLVTWN 178
Query: 93 TLIRAYSSSDEPI-------------------------------QSFMIFLQLVYNSPYF 121
+++ AY+ S + + ++ IF Q++
Sbjct: 179 SILDAYAKSGDVVSARLVFDEMSERDVVTWSSMIDGYVKRGEYNKALEIFDQMMRMGSSK 238
Query: 122 PNEFTLPFVIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYCV 176
NE T+ VI A A G+ +H D +++ SLI YA CG + A+ V
Sbjct: 239 ANEVTMVSVICACAHLGALNRGKTVHRYILDVHLPLTVILQTSLIDMYAKCGSIGDAWSV 298
Query: 177 F--VMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
F + + D + WN++I G GF ++++L+ +M + PDE+T + +L+AC+
Sbjct: 299 FYRASVKETDALMWNAIIGGLASHGFIRESLQLFHKMRESKIDPDEITFLCLLAACS 355
Score = 34.7 bits (78), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 54/110 (49%), Gaps = 3/110 (2%)
Query: 148 GMFEDDLVISNSLIHFYAVC--GDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAI 205
G+ E++ +S +L F A+ GD+ AY + WN +I GF EK+I
Sbjct: 35 GLSEEEPFVSQTL-SFSALSSSGDVDYAYKFLSKLSDPPNYGWNFVIRGFSNSRNPEKSI 93
Query: 206 ELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+Y +M + PD +T ++ + ++ + + G + + K+G++ DL
Sbjct: 94 SVYIQMLRFGLLPDHMTYPFLMKSSSRLSNRKLGGSLHCSVVKSGLEWDL 143
>sp|Q9ZVF4|PP140_ARATH Pentatricopeptide repeat-containing protein At2g01510,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H37 PE=3
SV=1
Length = 584
Score = 110 bits (275), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 120/227 (52%), Gaps = 8/227 (3%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
KQLK+IHA +L T F ++L L + YAR++FD++ +P ++ WNTL +
Sbjct: 25 KQLKKIHAIVLRTGFSEKNSLLTQLLEN--LVVIGDMCYARQVFDEMHKPRIFLWNTLFK 82
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FE 151
Y + P +S +++ ++ + P+EFT PFV+KA ++ F G A+H F
Sbjct: 83 GYVRNQLPFESLLLYKKM-RDLGVRPDEFTYPFVVKAISQLGDFSCGFALHAHVVKYGFG 141
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
+++ L+ Y G+L+ A +F + KD+V+WN+ ++ V+ G A+E + +M
Sbjct: 142 CLGIVATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFLAVCVQTGNSAIALEYFNKM 201
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
+ V+ D T+V +LSAC + LE G + K I ++ E
Sbjct: 202 CADAVQFDSFTVVSMLSACGQLGSLEIGEEIYDRARKEEIDCNIIVE 248
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 84/167 (50%), Gaps = 6/167 (3%)
Query: 70 FSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPF 129
F L A +F+ + +L WN + + + F ++ ++ F + FT+
Sbjct: 157 FGELSSAEFLFESMQVKDLVAWNAFLAVCVQTGNSAIALEYFNKMCADAVQF-DSFTVVS 215
Query: 130 VIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKD 184
++ A + +G+ I+ + ++++ N+ + + CG+ A +F + +++
Sbjct: 216 MLSACGQLGSLEIGEEIYDRARKEEIDCNIIVENARLDMHLKCGNTEAARVLFEEMKQRN 275
Query: 185 VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
VVSW++MI G+ G +A+ L+ M+ E ++P+ VT + VLSAC+
Sbjct: 276 VVSWSTMIVGYAMNGDSREALTLFTTMQNEGLRPNYVTFLGVLSACS 322
>sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2
SV=1
Length = 871
Score = 109 bits (273), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 120/227 (52%), Gaps = 14/227 (6%)
Query: 40 KRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
KR+H + D FD + ++ L + C S++ A +F ++ ++ +WNT+I
Sbjct: 417 KRVHEWIKENDLGFDIFVSNALMDMYAKCG-----SMQEAELVFSEMRVKDIISWNTIIG 471
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FE 151
YS + ++ +F L+ + P+E T+ V+ A A F G+ IHG +
Sbjct: 472 GYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYF 531
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
D ++NSL+ YA CG L +A+ +F I KD+VSW MI+G+ GF ++AI L+ +M
Sbjct: 532 SDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQM 591
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
++ DE++ V +L AC+ ++ G W +I ++ K++ T E
Sbjct: 592 RQAGIEADEISFVSLLYACSHSGLVDEG-WRFFNIMRHECKIEPTVE 637
Score = 104 bits (259), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 103/188 (54%), Gaps = 6/188 (3%)
Query: 73 LEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132
++ ARK+FD++ + ++ +WN++I Y S+ + +F+Q++ S + T+ V
Sbjct: 246 VDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLV-SGIEIDLATIVSVFA 304
Query: 133 AAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
A +G+A+H + F + N+L+ Y+ CGDL A VF + + VVS
Sbjct: 305 GCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVS 364
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIE 247
+ SMI+G+ G +A++L+ EME E + PD T+ VL+ CA+ R L+ G V I+
Sbjct: 365 YTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIK 424
Query: 248 KNGIKMDL 255
+N + D+
Sbjct: 425 ENDLGFDI 432
Score = 81.3 bits (199), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 101/216 (46%), Gaps = 14/216 (6%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
K K + + F D SKL +T C L+ A ++FD++ WN
Sbjct: 111 KDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCG-----DLKEASRVFDEVKIEKALFWNI 165
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM---- 149
L+ + S + S +F +++ +S + +T V K+ + G+ +HG
Sbjct: 166 LMNELAKSGDFSGSIGLFKKMM-SSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKS 224
Query: 150 -FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY 208
F + + NSL+ FY + A VF + ++DV+SWNS+I+G+V G EK + ++
Sbjct: 225 GFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVF 284
Query: 209 REMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSS 244
+M V ++ D T+V V + CA R + G V S
Sbjct: 285 VQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHS 320
Score = 38.5 bits (88), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 42/195 (21%), Positives = 79/195 (40%), Gaps = 12/195 (6%)
Query: 61 LFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPY 120
+F +L T S + FD+ ++ NT +R + S + + L + +
Sbjct: 38 IFNRASLRTVSDCVDSITTFDR----SVTDANTQLRRFCESGNLENAVKL---LCVSGKW 90
Query: 121 FPNEFTLPFVIKAAARPVQFRVGQAIHGMFED-----DLVISNSLIHFYAVCGDLAMAYC 175
+ TL V++ A + G+ + D + + L Y CGDL A
Sbjct: 91 DIDPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASR 150
Query: 176 VFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRD 235
VF + + + WN +++ + G F +I L+++M V+ D T V + + R
Sbjct: 151 VFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRS 210
Query: 236 LEFGIWVSSHIEKNG 250
+ G + I K+G
Sbjct: 211 VHGGEQLHGFILKSG 225
Score = 31.6 bits (70), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWV 242
+ V N+ + F E G E A++L ++ P T+ VL CA + L+ G V
Sbjct: 59 RSVTDANTQLRRFCESGNLENAVKLLCVSGKWDIDPR--TLCSVLQLCADSKSLKDGKEV 116
Query: 243 SSHIEKNGIKMD 254
+ I NG +D
Sbjct: 117 DNFIRGNGFVID 128
>sp|Q9LUS3|PP237_ARATH Pentatricopeptide repeat-containing protein At3g16610
OS=Arabidopsis thaliana GN=PCMP-E91 PE=2 SV=1
Length = 654
Score = 109 bits (272), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 111/208 (53%), Gaps = 14/208 (6%)
Query: 59 SKLFTPCALSTFSSLEYARKMFDQIPQP--NLYTWNTLIRAYSSSDEPIQSFMIFLQLVY 116
++L+ C + +E AR +FD+IP P N W+ +IRAY+S+D ++ ++ +++
Sbjct: 42 TRLYASC-----NEVELARHVFDEIPHPRINPIAWDLMIRAYASNDFAEKALDLYYKML- 95
Query: 117 NSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLA 171
NS P ++T PFV+KA A G+ IH F D+ + +L+ FYA CG+L
Sbjct: 96 NSGVRPTKYTYPFVLKACAGLRAIDDGKLIHSHVNCSDFATDMYVCTALVDFYAKCGELE 155
Query: 172 MAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM-EVENVKPDEVTMVVVLSAC 230
MA VF + K+D+V+WN+MISGF I L+ +M ++ + P+ T+V + A
Sbjct: 156 MAIKVFDEMPKRDMVAWNAMISGFSLHCCLTDVIGLFLDMRRIDGLSPNLSTIVGMFPAL 215
Query: 231 AKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
+ L G V + + G DL +
Sbjct: 216 GRAGALREGKAVHGYCTRMGFSNDLVVK 243
Score = 97.8 bits (242), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 111/233 (47%), Gaps = 23/233 (9%)
Query: 40 KRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K IH+ + +DF D Y + L + C LE A K+FD++P+ ++ WN +I
Sbjct: 123 KLIHSHVNCSDFATDMYVCTALVDFYAKCG-----ELEMAIKVFDEMPKRDMVAWNAMIS 177
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FE 151
+S +FL + PN T+ + A R R G+A+HG F
Sbjct: 178 GFSLHCCLTDVIGLFLDMRRIDGLSPNLSTIVGMFPALGRAGALREGKAVHGYCTRMGFS 237
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
+DLV+ ++ YA + A VF + KK+ V+W++MI G+VE ++A E++ +M
Sbjct: 238 NDLVVKTGILDVYAKSKCIIYARRVFDLDFKKNEVTWSAMIGGYVENEMIKEAGEVFFQM 297
Query: 212 EVENVKPDEVTMV------VVLSACAKKRDLEFGIWVSSHIEKNGIKMDLTFE 258
V D V MV ++L CA+ DL G V + K G +DLT +
Sbjct: 298 LVN----DNVAMVTPVAIGLILMGCARFGDLSGGRCVHCYAVKAGFILDLTVQ 346
Score = 91.3 bits (225), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 91/169 (53%), Gaps = 6/169 (3%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
+ + SL A + F +I ++ ++N+LI + P +SF +F ++ S P+ TL
Sbjct: 354 AKYGSLCDAFRQFSEIGLKDVISYNSLITGCVVNCRPEESFRLFHEM-RTSGIRPDITTL 412
Query: 128 PFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
V+ A + G + HG + + I N+L+ Y CG L +A VF + K
Sbjct: 413 LGVLTACSHLAALGHGSSCHGYCVVHGYAVNTSICNALMDMYTKCGKLDVAKRVFDTMHK 472
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
+D+VSWN+M+ GF G ++A+ L+ M+ V PDEVT++ +LSAC+
Sbjct: 473 RDIVSWNTMLFGFGIHGLGKEALSLFNSMQETGVNPDEVTLLAILSACS 521
Score = 88.2 bits (217), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 87/171 (50%), Gaps = 6/171 (3%)
Query: 75 YARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPY-FPNEFTLPFVIKA 133
YAR++FD + N TW+ +I Y ++ ++ +F Q++ N + ++
Sbjct: 258 YARRVFDLDFKKNEVTWSAMIGGYVENEMIKEAGEVFFQMLVNDNVAMVTPVAIGLILMG 317
Query: 134 AARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSW 188
AR G+ +H F DL + N++I FYA G L A+ F IG KDV+S+
Sbjct: 318 CARFGDLSGGRCVHCYAVKAGFILDLTVQNTIISFYAKYGSLCDAFRQFSEIGLKDVISY 377
Query: 189 NSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
NS+I+G V E++ L+ EM ++PD T++ VL+AC+ L G
Sbjct: 378 NSLITGCVVNCRPEESFRLFHEMRTSGIRPDITTLLGVLTACSHLAALGHG 428
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/190 (21%), Positives = 82/190 (43%), Gaps = 33/190 (17%)
Query: 61 LFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPY 120
++T C L+ A+++FD + + ++ +WNT++ + ++ +F + +
Sbjct: 453 MYTKCG-----KLDVAKRVFDTMHKRDIVSWNTMLFGFGIHGLGKEALSLFNSM-QETGV 506
Query: 121 FPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMI 180
P+E TL ++ A + G+ ++ + NS+ GD F +I
Sbjct: 507 NPDEVTLLAILSACSHS----------GLVDEGKQLFNSMSR-----GD-------FNVI 544
Query: 181 GKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
+ D +N M G+ ++A + +M E PD + +LSAC ++ E G
Sbjct: 545 PRID--HYNCMTDLLARAGYLDEAYDFVNKMPFE---PDIRVLGTLLSACWTYKNAELGN 599
Query: 241 WVSSHIEKNG 250
VS ++ G
Sbjct: 600 EVSKKMQSLG 609
>sp|O04659|PP398_ARATH Pentatricopeptide repeat-containing protein At5g27110
OS=Arabidopsis thaliana GN=PCMP-E14 PE=2 SV=2
Length = 691
Score = 109 bits (272), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 119/221 (53%), Gaps = 8/221 (3%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
+ IH ++ + + D AS L A F+ E + ++FD++P+ ++ +WNT+I +
Sbjct: 127 RMIHTLVVKSGYVCDVVVASSLVGMYA--KFNLFENSLQVFDEMPERDVASWNTVISCFY 184
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDL 154
S E ++ +F ++ +S + PN +L I A +R + G+ IH FE D
Sbjct: 185 QSGEAEKALELFGRM-ESSGFEPNSVSLTVAISACSRLLWLERGKEIHRKCVKKGFELDE 243
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
++++L+ Y C L +A VF + +K +V+WNSMI G+V G + +E+ M +E
Sbjct: 244 YVNSALVDMYGKCDCLEVAREVFQKMPRKSLVAWNSMIKGYVAKGDSKSCVEILNRMIIE 303
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+P + T+ +L AC++ R+L G ++ ++ ++ + D+
Sbjct: 304 GTRPSQTTLTSILMACSRSRNLLHGKFIHGYVIRSVVNADI 344
Score = 107 bits (268), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 74/248 (29%), Positives = 119/248 (47%), Gaps = 17/248 (6%)
Query: 15 PNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKL---FTPCALSTFS 71
PN +LTV +L K+ IH + + F D Y S L + C
Sbjct: 206 PNSVSLTVAISACSRLLWLERGKE---IHRKCVKKGFELDEYVNSALVDMYGKC-----D 257
Query: 72 SLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVI 131
LE AR++F ++P+ +L WN++I+ Y + + I +++ P++ TL ++
Sbjct: 258 CLEVAREVFQKMPRKSLVAWNSMIKGYVAKGDSKSCVEILNRMIIEGTR-PSQTTLTSIL 316
Query: 132 KAAARPVQFRVGQAIHG-----MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVV 186
A +R G+ IHG + D+ ++ SLI Y CG+ +A VF K
Sbjct: 317 MACSRSRNLLHGKFIHGYVIRSVVNADIYVNCSLIDLYFKCGEANLAETVFSKTQKDVAE 376
Query: 187 SWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
SWN MIS ++ G + KA+E+Y +M VKPD VT VL AC++ LE G + I
Sbjct: 377 SWNVMISSYISVGNWFKAVEVYDQMVSVGVKPDVVTFTSVLPACSQLAALEKGKQIHLSI 436
Query: 247 EKNGIKMD 254
++ ++ D
Sbjct: 437 SESRLETD 444
Score = 95.9 bits (237), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 117/226 (51%), Gaps = 12/226 (5%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEY--ARKMFDQIP-QPNLYTWNT 93
+++K +H ++L+ D L F+ ++ AR +F+ + ++Y WN+
Sbjct: 21 RRIKLVHQRILTLGLRRDVVLCKSLINV----YFTCKDHCSARHVFENFDIRSDVYIWNS 76
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM---- 149
L+ YS + + +F +L+ S P+ FT P VIKA + +G+ IH +
Sbjct: 77 LMSGYSKNSMFHDTLEVFKRLLNCSICVPDSFTFPNVIKAYGALGREFLGRMIHTLVVKS 136
Query: 150 -FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY 208
+ D+V+++SL+ YA + VF + ++DV SWN++IS F + G EKA+EL+
Sbjct: 137 GYVCDVVVASSLVGMYAKFNLFENSLQVFDEMPERDVASWNTVISCFYQSGEAEKALELF 196
Query: 209 REMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
ME +P+ V++ V +SAC++ LE G + K G ++D
Sbjct: 197 GRMESSGFEPNSVSLTVAISACSRLLWLERGKEIHRKCVKKGFELD 242
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 117/249 (46%), Gaps = 20/249 (8%)
Query: 1 METLSTPVISIPRHPNPTTLT-VNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPY--- 56
+E L+ +I R P+ TTLT + R + L K IH ++ + D Y
Sbjct: 294 VEILNRMIIEGTR-PSQTTLTSILMACSRSRNLLHG----KFIHGYVIRSVVNADIYVNC 348
Query: 57 SASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVY 116
S L+ C + A +F + + +WN +I +Y S ++ ++ Q+V
Sbjct: 349 SLIDLYFKCGEANL-----AETVFSKTQKDVAESWNVMISSYISVGNWFKAVEVYDQMV- 402
Query: 117 NSPYFPNEFTLPFVIKAAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLA 171
+ P+ T V+ A ++ G+ IH E D ++ ++L+ Y+ CG+
Sbjct: 403 SVGVKPDVVTFTSVLPACSQLAALEKGKQIHLSISESRLETDELLLSALLDMYSKCGNEK 462
Query: 172 MAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
A+ +F I KKDVVSW MIS + G +A+ + EM+ +KPD VT++ VLSAC
Sbjct: 463 EAFRIFNSIPKKDVVSWTVMISAYGSHGQPREALYQFDEMQKFGLKPDGVTLLAVLSACG 522
Query: 232 KKRDLEFGI 240
++ G+
Sbjct: 523 HAGLIDEGL 531
>sp|Q9FG85|PP415_ARATH Pentatricopeptide repeat-containing protein At5g43790
OS=Arabidopsis thaliana GN=PCMP-E30 PE=2 SV=1
Length = 460
Score = 108 bits (270), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 124/234 (52%), Gaps = 22/234 (9%)
Query: 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
+ LK+IHAQ+++ Y SKL LS+ L YA + QIP P+++ +NTLI
Sbjct: 23 QNLKQIHAQIITIGLSHHTYPLSKLL---HLSSTVCLSYALSILRQIPNPSVFLYNTLIS 79
Query: 97 AYSSSDEPIQS---FMIFLQLVYNSPYF--PNEFTLPFVIKAAARPVQF-RVGQAIHGM- 149
+ S+ Q+ F ++ Q++ + F PNEFT P + KA+ Q+ R G+A+H
Sbjct: 80 SIVSNHNSTQTHLAFSLYDQILSSRSNFVRPNEFTYPSLFKASGFDAQWHRHGRALHAHV 139
Query: 150 ------FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFV---EGGF 200
D + +L+ FYA CG L A +F I + D+ +WN++++ + E
Sbjct: 140 LKFLEPVNHDRFVQAALVGFYANCGKLREARSLFERIREPDLATWNTLLAAYANSEEIDS 199
Query: 201 FEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
E+ + L+ M+ V+P+E+++V ++ +CA + G+W ++ KN + ++
Sbjct: 200 DEEVLLLFMRMQ---VRPNELSLVALIKSCANLGEFVRGVWAHVYVLKNNLTLN 250
Score = 108 bits (270), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 71/216 (32%), Positives = 115/216 (53%), Gaps = 14/216 (6%)
Query: 36 QKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTF----SSLEYARKMFDQIPQPNLYTW 91
+ + +HA +L F +P + + F AL F L AR +F++I +P+L TW
Sbjct: 129 HRHGRALHAHVLK---FLEPVNHDR-FVQAALVGFYANCGKLREARSLFERIREPDLATW 184
Query: 92 NTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG-MF 150
NTL+ AY++S+E I S L L PNE +L +IK+ A +F G H +
Sbjct: 185 NTLLAAYANSEE-IDSDEEVLLLFMRMQVRPNELSLVALIKSCANLGEFVRGVWAHVYVL 243
Query: 151 EDDLV----ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIE 206
+++L + SLI Y+ CG L+ A VF + ++DV +N+MI G GF ++ IE
Sbjct: 244 KNNLTLNQFVGTSLIDLYSKCGCLSFARKVFDEMSQRDVSCYNAMIRGLAVHGFGQEGIE 303
Query: 207 LYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWV 242
LY+ + + + PD T VV +SAC+ ++ G+ +
Sbjct: 304 LYKSLISQGLVPDSATFVVTISACSHSGLVDEGLQI 339
>sp|Q0WN60|PPR48_ARATH Pentatricopeptide repeat-containing protein At1g18485
OS=Arabidopsis thaliana GN=PCMP-H8 PE=2 SV=2
Length = 970
Score = 108 bits (269), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 115/211 (54%), Gaps = 14/211 (6%)
Query: 40 KRIHAQMLS--TDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
++IH Q++S T D +++ T A+ S + +R +FD + NL+ WN +I +
Sbjct: 104 RKIH-QLVSGSTRLRNDDVLCTRIITMYAMC--GSPDDSRFVFDALRSKNLFQWNAVISS 160
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FED 152
YS ++ + F++++ + P+ FT P VIKA A +G A+HG+ +
Sbjct: 161 YSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVE 220
Query: 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREME 212
D+ + N+L+ FY G + A +F ++ ++++VSWNSMI F + GF E++ L EM
Sbjct: 221 DVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMM 280
Query: 213 VENVK----PDEVTMVVVLSACAKKRDLEFG 239
EN PD T+V VL CA++R++ G
Sbjct: 281 EENGDGAFMPDVATLVTVLPVCAREREIGLG 311
Score = 104 bits (260), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 112/216 (51%), Gaps = 11/216 (5%)
Query: 29 HPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNL 88
H FL + LK +H L +F ++ A+ A SL YA+++F I +
Sbjct: 407 HESFLPS---LKELHCYSLKQEFVYNELVANAFVASYA--KCGSLSYAQRVFHGIRSKTV 461
Query: 89 YTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG 148
+WN LI ++ S++P S LQ+ S P+ FT+ ++ A ++ R+G+ +HG
Sbjct: 462 NSWNALIGGHAQSNDPRLSLDAHLQMKI-SGLLPDSFTVCSLLSACSKLKSLRLGKEVHG 520
Query: 149 M-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEK 203
E DL + S++ Y CG+L +F + K +VSWN++I+G+++ GF ++
Sbjct: 521 FIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDR 580
Query: 204 AIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239
A+ ++R+M + ++ ++M+ V AC+ L G
Sbjct: 581 ALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLG 616
Score = 100 bits (249), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 106/199 (53%), Gaps = 12/199 (6%)
Query: 42 IHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS 101
+H ++ T D + + L + F + A ++FD +P+ NL +WN++IR +S +
Sbjct: 209 VHGLVVKTGLVEDVFVGNALVSFYGTHGF--VTDALQLFDIMPERNLVSWNSMIRVFSDN 266
Query: 102 DEPIQSFMIFLQLVY---NSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG-----MFEDD 153
+SF++ +++ + + P+ TL V+ AR + +G+ +HG + +
Sbjct: 267 GFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKE 326
Query: 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213
LV++N+L+ Y+ CG + A +F M K+VVSWN+M+ GF G ++ R+M
Sbjct: 327 LVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLA 386
Query: 214 --ENVKPDEVTMVVVLSAC 230
E+VK DEVT++ + C
Sbjct: 387 GGEDVKADEVTILNAVPVC 405
Score = 85.9 bits (211), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 82/159 (51%), Gaps = 6/159 (3%)
Query: 77 RKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAAR 136
+ +FD + +L +WNT+I Y + P ++ +F Q+V +P V A +
Sbjct: 551 QALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMP-VFGACSL 609
Query: 137 PVQFRVGQAIHG-----MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSM 191
R+G+ H + EDD I+ SLI YA G + + VF + +K SWN+M
Sbjct: 610 LPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAM 669
Query: 192 ISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230
I G+ G ++AI+L+ EM+ PD++T + VL+AC
Sbjct: 670 IMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTAC 708
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 101/226 (44%), Gaps = 27/226 (11%)
Query: 41 RIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSS 100
R+ +++ + D YS T A+ +F N+ +WNT++ +S+
Sbjct: 322 RLDKELVLNNALMDMYSKCGCITN-----------AQMIFKMNNNKNVVSWNTMVGGFSA 370
Query: 101 SDEPIQSFMIFLQLVYNSPYF-PNEFTLPFVIKAAARPVQFRVG----------QAIHGM 149
+ +F + Q++ +E T+ A PV F ++
Sbjct: 371 EGDTHGTFDVLRQMLAGGEDVKADEVTI-----LNAVPVCFHESFLPSLKELHCYSLKQE 425
Query: 150 FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYR 209
F + +++N+ + YA CG L+ A VF I K V SWN++I G + +++ +
Sbjct: 426 FVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHL 485
Query: 210 EMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+M++ + PD T+ +LSAC+K + L G V I +N ++ DL
Sbjct: 486 QMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDL 531
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 67/137 (48%), Gaps = 7/137 (5%)
Query: 126 TLPFVIKAAARPVQFRVGQAIHGM------FEDDLVISNSLIHFYAVCGDLAMAYCVFVM 179
L +++A+ + +G+ IH + +D V+ +I YA+CG + VF
Sbjct: 86 ALGLLLQASGKRKDIEMGRKIHQLVSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDA 145
Query: 180 IGKKDVVSWNSMISGFVEGGFFEKAIELYREM-EVENVKPDEVTMVVVLSACAKKRDLEF 238
+ K++ WN++IS + +++ +E + EM ++ PD T V+ ACA D+
Sbjct: 146 LRSKNLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGI 205
Query: 239 GIWVSSHIEKNGIKMDL 255
G+ V + K G+ D+
Sbjct: 206 GLAVHGLVVKTGLVEDV 222
>sp|Q56X05|PPR15_ARATH Pentatricopeptide repeat-containing protein At1g06145
OS=Arabidopsis thaliana GN=EMB1444 PE=2 SV=2
Length = 577
Score = 108 bits (269), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 95/166 (57%), Gaps = 6/166 (3%)
Query: 70 FSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPF 129
+LE A +F+Q+P ++ +W T+I+ YS + ++ +F +++ P+E T+
Sbjct: 234 LGNLEQAESLFNQMPVKDIISWTTMIKGYSQNKRYREAIAVFYKMM-EEGIIPDEVTMST 292
Query: 130 VIKAAARPVQFRVGQAIH-----GMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKD 184
VI A A +G+ +H F D+ I ++L+ Y+ CG L A VF + KK+
Sbjct: 293 VISACAHLGVLEIGKEVHMYTLQNGFVLDVYIGSALVDMYSKCGSLERALLVFFNLPKKN 352
Query: 185 VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230
+ WNS+I G GF ++A++++ +ME+E+VKP+ VT V V +AC
Sbjct: 353 LFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVSVFTAC 398
Score = 78.2 bits (191), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 85/189 (44%), Gaps = 37/189 (19%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
S + ARK+FD++P+ + W T++ AY
Sbjct: 170 SATGRIREARKVFDEMPERDDIAWTTMVSAYR---------------------------- 201
Query: 128 PFVIKAAARPVQFRVGQAI-HGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVV 186
R + ++ + M E + SN LI+ Y G+L A +F + KD++
Sbjct: 202 --------RVLDMDSANSLANQMSEKNEATSNCLINGYMGLGNLEQAESLFNQMPVKDII 253
Query: 187 SWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
SW +MI G+ + + +AI ++ +M E + PDEVTM V+SACA LE G V +
Sbjct: 254 SWTTMIKGYSQNKRYREAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYT 313
Query: 247 EKNGIKMDL 255
+NG +D+
Sbjct: 314 LQNGFVLDV 322
Score = 51.2 bits (121), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 77/200 (38%), Gaps = 37/200 (18%)
Query: 40 KRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
K +H L F D Y S L ++ C SLE A +F +P+ NL+ WN++I
Sbjct: 307 KEVHMYTLQNGFVLDVYIGSALVDMYSKCG-----SLERALLVFFNLPKKNLFCWNSIIE 361
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVI 156
++ ++ +F ++ S PN T V A G+ I+ DD I
Sbjct: 362 GLAAHGFAQEALKMFAKMEMESVK-PNAVTFVSVFTACTHAGLVDEGRRIYRSMIDDYSI 420
Query: 157 SNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENV 216
+++ H+ M+ F + G +A+EL ME E
Sbjct: 421 VSNVEHY-------------------------GGMVHLFSKAGLIYEALELIGNMEFE-- 453
Query: 217 KPDEVTMVVVLSACAKKRDL 236
P+ V +L C ++L
Sbjct: 454 -PNAVIWGALLDGCRIHKNL 472
>sp|Q9LIC3|PP227_ARATH Putative pentatricopeptide repeat-containing protein At3g13770,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H85 PE=3
SV=1
Length = 628
Score = 108 bits (269), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 113/215 (52%), Gaps = 14/215 (6%)
Query: 40 KRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96
+R+HA M+ T + Y ++L + C LE ARK+ D++P+ N+ +W +I
Sbjct: 72 QRVHAHMIKTRYLPATYLRTRLLIFYGKC-----DCLEDARKVLDEMPEKNVVSWTAMIS 126
Query: 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FE 151
YS + ++ +F +++ S PNEFT V+ + R +G+ IHG+ ++
Sbjct: 127 RYSQTGHSSEALTVFAEMM-RSDGKPNEFTFATVLTSCIRASGLGLGKQIHGLIVKWNYD 185
Query: 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211
+ + +SL+ YA G + A +F + ++DVVS ++I+G+ + G E+A+E++ +
Sbjct: 186 SHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFHRL 245
Query: 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
E + P+ VT +L+A + L+ G H+
Sbjct: 246 HSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHV 280
Score = 81.3 bits (199), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 107/207 (51%), Gaps = 9/207 (4%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K+IH ++ ++ + S L A + ++ AR++F+ +P+ ++ + +I Y+
Sbjct: 173 KQIHGLIVKWNYDSHIFVGSSLLDMYAKA--GQIKEAREIFECLPERDVVSCTAIIAGYA 230
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG-MFEDDL---- 154
++ +F +L ++ PN T ++ A + G+ H + +L
Sbjct: 231 QLGLDEEALEMFHRL-HSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYA 289
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
V+ NSLI Y+ CG+L+ A +F + ++ +SWN+M+ G+ + G + +EL+R M E
Sbjct: 290 VLQNSLIDMYSKCGNLSYARRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDE 349
Query: 215 N-VKPDEVTMVVVLSACAKKRDLEFGI 240
VKPD VT++ VLS C+ R + G+
Sbjct: 350 KRVKPDAVTLLAVLSGCSHGRMEDTGL 376
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 5/124 (4%)
Query: 130 VIKAAARPVQFRVGQAIHG-MFEDDLV----ISNSLIHFYAVCGDLAMAYCVFVMIGKKD 184
++ A R GQ +H M + + + L+ FY C L A V + +K+
Sbjct: 58 LLNACLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKN 117
Query: 185 VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSS 244
VVSW +MIS + + G +A+ ++ EM + KP+E T VL++C + L G +
Sbjct: 118 VVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQIHG 177
Query: 245 HIEK 248
I K
Sbjct: 178 LIVK 181
>sp|Q8VYH0|PP313_ARATH Pentatricopeptide repeat-containing protein At4g15720
OS=Arabidopsis thaliana GN=PCMP-H1 PE=2 SV=1
Length = 616
Score = 107 bits (268), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 115/226 (50%), Gaps = 11/226 (4%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
TN +H L F D ++ + L + + ARK+FD++ +PN+ +W +
Sbjct: 43 TNAAFTNLLHTLTLKLGFASDTFTVNHLVI--SYVKLKEINTARKLFDEMCEPNVVSWTS 100
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFE-- 151
+I Y+ +P + +F ++ + P PNE+T V KA + + R+G+ IH E
Sbjct: 101 VISGYNDMGKPQNALSMFQKMHEDRPVPPNEYTFASVFKACSALAESRIGKNIHARLEIS 160
Query: 152 ---DDLVISNSLIHFYAVCGDLAMAYCVF-VMIG-KKDVVSWNSMISGFVEGGFFEKAIE 206
++V+S+SL+ Y C D+ A VF MIG ++VVSW SMI+ + + +AIE
Sbjct: 161 GLRRNIVVSSSLVDMYGKCNDVETARRVFDSMIGYGRNVVSWTSMITAYAQNARGHEAIE 220
Query: 207 LYREME--VENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
L+R + + + ++ + V+SAC+ L++G + + G
Sbjct: 221 LFRSFNAALTSDRANQFMLASVISACSSLGRLQWGKVAHGLVTRGG 266
Score = 88.2 bits (217), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 117/233 (50%), Gaps = 21/233 (9%)
Query: 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKL---FTPCALSTFSSLEYARKMFDQIPQ--PN 87
L + K IHA++ + + +S L + C + +E AR++FD + N
Sbjct: 144 LAESRIGKNIHARLEISGLRRNIVVSSSLVDMYGKC-----NDVETARRVFDSMIGYGRN 198
Query: 88 LYTWNTLIRAYSSS---DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQ 144
+ +W ++I AY+ + E I+ F F + + N+F L VI A + + + G+
Sbjct: 199 VVSWTSMITAYAQNARGHEAIELFRSFNAALTSDR--ANQFMLASVISACSSLGRLQWGK 256
Query: 145 AIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGG 199
HG+ +E + V++ SL+ YA CG L+ A +F+ I V+S+ SMI + G
Sbjct: 257 VAHGLVTRGGYESNTVVATSLLDMYAKCGSLSCAEKIFLRIRCHSVISYTSMIMAKAKHG 316
Query: 200 FFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI-WVSSHIEKNGI 251
E A++L+ EM + P+ VT++ VL AC+ + G+ ++S EK G+
Sbjct: 317 LGEAAVKLFDEMVAGRINPNYVTLLGVLHACSHSGLVNEGLEYLSLMAEKYGV 369
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 69/147 (46%), Gaps = 10/147 (6%)
Query: 119 PYFPNEF----TLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGD 169
P + N+F T F++ + +H + F D N L+ Y +
Sbjct: 20 PQYKNDFFHLKTKAFLVHKLSESTNAAFTNLLHTLTLKLGFASDTFTVNHLVISYVKLKE 79
Query: 170 LAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVEN-VKPDEVTMVVVLS 228
+ A +F + + +VVSW S+ISG+ + G + A+ ++++M + V P+E T V
Sbjct: 80 INTARKLFDEMCEPNVVSWTSVISGYNDMGKPQNALSMFQKMHEDRPVPPNEYTFASVFK 139
Query: 229 ACAKKRDLEFGIWVSSHIEKNGIKMDL 255
AC+ + G + + +E +G++ ++
Sbjct: 140 ACSALAESRIGKNIHARLEISGLRRNI 166
>sp|Q9LS72|PP261_ARATH Pentatricopeptide repeat-containing protein At3g29230
OS=Arabidopsis thaliana GN=PCMP-E27 PE=2 SV=1
Length = 600
Score = 107 bits (268), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 114/210 (54%), Gaps = 14/210 (6%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
N Q+K++HAQ++ + D + A KL + ALS A ++F+Q+ +PN++ N+
Sbjct: 30 ANLNQVKQLHAQIIRRNLHEDLHIAPKLIS--ALSLCRQTNLAVRVFNQVQEPNVHLCNS 87
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFE-- 151
LIRA++ + +P Q+F +F ++ F + FT PF++KA + V + +H E
Sbjct: 88 LIRAHAQNSQPYQAFFVFSEM-QRFGLFADNFTYPFLLKACSGQSWLPVVKMMHNHIEKL 146
Query: 152 ---DDLVISNSLIHFYAVCGDLAM--AYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIE 206
D+ + N+LI Y+ CG L + A +F + ++D VSWNSM+ G V+ G A
Sbjct: 147 GLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDARR 206
Query: 207 LYREMEVENVKPDEVTMVVVLSACAKKRDL 236
L+ EM + D ++ +L A+ R++
Sbjct: 207 LFDEMP----QRDLISWNTMLDGYARCREM 232
Score = 97.4 bits (241), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 93/180 (51%), Gaps = 8/180 (4%)
Query: 68 STFSSLEYARKMFDQIPQP--NLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
S +E AR MFD++P P N+ TW +I Y+ ++ + Q+V + F
Sbjct: 258 SKAGDMEMARVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVASGLKFDAAA 317
Query: 126 TLPFVIKAAARPVQFRVGQAIHGMFE-----DDLVISNSLIHFYAVCGDLAMAYCVFVMI 180
+ ++ A +G IH + + + + N+L+ YA CG+L A+ VF I
Sbjct: 318 VIS-ILAACTESGLLSLGMRIHSILKRSNLGSNAYVLNALLDMYAKCGNLKKAFDVFNDI 376
Query: 181 GKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240
KKD+VSWN+M+ G G ++AIEL+ M E ++PD+VT + VL +C ++ GI
Sbjct: 377 PKKDLVSWNTMLHGLGVHGHGKEAIELFSRMRREGIRPDKVTFIAVLCSCNHAGLIDEGI 436
Score = 71.6 bits (174), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 88/188 (46%), Gaps = 37/188 (19%)
Query: 66 ALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125
L L AR++FD++PQ +L +WNT++ Y+ E ++F +F +
Sbjct: 194 GLVKAGELRDARRLFDEMPQRDLISWNTMLDGYARCREMSKAFELFEK------------ 241
Query: 126 TLPFVIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVF--VMIGKK 183
M E + V ++++ Y+ GD+ MA +F + + K
Sbjct: 242 -----------------------MPERNTVSWSTMVMGYSKAGDMEMARVMFDKMPLPAK 278
Query: 184 DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVS 243
+VV+W +I+G+ E G ++A L +M +K D ++ +L+AC + L G+ +
Sbjct: 279 NVVTWTIIIAGYAEKGLLKEADRLVDQMVASGLKFDAAAVISILAACTESGLLSLGMRIH 338
Query: 244 SHIEKNGI 251
S ++++ +
Sbjct: 339 SILKRSNL 346
Score = 36.6 bits (83), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 52/113 (46%)
Query: 143 GQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFE 202
Q I +DL I+ LI ++C +A VF + + +V NS+I +
Sbjct: 40 AQIIRRNLHEDLHIAPKLISALSLCRQTNLAVRVFNQVQEPNVHLCNSLIRAHAQNSQPY 99
Query: 203 KAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255
+A ++ EM+ + D T +L AC+ + L + +HIEK G+ D+
Sbjct: 100 QAFFVFSEMQRFGLFADNFTYPFLLKACSGQSWLPVVKMMHNHIEKLGLSSDI 152
>sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700
OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1
Length = 792
Score = 107 bits (266), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 106/195 (54%), Gaps = 8/195 (4%)
Query: 42 IHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSS 101
IH L ++F ++ L T S + +E ARK+FD+ P+ +L +WN +I Y+ +
Sbjct: 341 IHGYCLKSNFLSHASVSTALTT--VYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQN 398
Query: 102 DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVI 156
+ +F ++ S + PN T+ ++ A A+ +G+ +H + FE + +
Sbjct: 399 GLTEDAISLFREM-QKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYV 457
Query: 157 SNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENV 216
S +LI YA CG +A A +F ++ KK+ V+WN+MISG+ G ++A+ ++ EM +
Sbjct: 458 STALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGI 517
Query: 217 KPDEVTMVVVLSACA 231
P VT + VL AC+
Sbjct: 518 TPTPVTFLCVLYACS 532
Score = 97.8 bits (242), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 118/223 (52%), Gaps = 8/223 (3%)
Query: 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNT 93
T+ L + HAQ++ F D +KL LS ++ YAR +F + +P+++ +N
Sbjct: 31 TSISHLAQTHAQIILHGFRNDISLLTKLTQR--LSDLGAIYYARDIFLSVQRPDVFLFNV 88
Query: 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM---- 149
L+R +S ++ P S +F L ++ PN T F I AA+ R G+ IHG
Sbjct: 89 LMRGFSVNESPHSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGRVIHGQAVVD 148
Query: 150 -FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELY 208
+ +L++ ++++ Y + A VF + +KD + WN+MISG+ + + ++I+++
Sbjct: 149 GCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVF 208
Query: 209 REMEVEN-VKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250
R++ E+ + D T++ +L A A+ ++L G+ + S K G
Sbjct: 209 RDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTG 251
Score = 83.6 bits (205), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 97/206 (47%), Gaps = 9/206 (4%)
Query: 41 RIHAQMLSTDFFFDPYSAS---KLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97
+IH+ T + Y + L++ C ++ +F + +P++ +N +I
Sbjct: 242 QIHSLATKTGCYSHDYVLTGFISLYSKCG-----KIKMGSALFREFRKPDIVAYNAMIHG 296
Query: 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRV-GQAIHGMFEDDLVI 156
Y+S+ E S +F +L+ + + + V + + + + G + F +
Sbjct: 297 YTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLIYAIHGYCLKSNFLSHASV 356
Query: 157 SNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENV 216
S +L Y+ ++ A +F +K + SWN+MISG+ + G E AI L+REM+
Sbjct: 357 STALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEF 416
Query: 217 KPDEVTMVVVLSACAKKRDLEFGIWV 242
P+ VT+ +LSACA+ L G WV
Sbjct: 417 SPNPVTITCILSACAQLGALSLGKWV 442
>sp|Q9LXF2|PP385_ARATH Pentatricopeptide repeat-containing protein At5g15300
OS=Arabidopsis thaliana GN=PCMP-E40 PE=2 SV=2
Length = 548
Score = 106 bits (264), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 121/235 (51%), Gaps = 18/235 (7%)
Query: 11 IPRHPNPTTLTVNNGHQRHPHFLTNQKQ---LKRIHAQMLSTDFFFDPYSASKLFTPCAL 67
I R N T ++R P N K LK+IHA M+ + +L +L
Sbjct: 2 IRRQTNDRTT-----NRRRPKLWQNCKNIRTLKQIHASMVVNGLMSNLSVVGELIYSASL 56
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
S +L+YA K+FD+IP+P++ N ++R + S +P ++ ++ ++ P+ +T
Sbjct: 57 SVPGALKYAHKLFDEIPKPDVSICNHVLRGSAQSMKPEKTVSLYTEM-EKRGVSPDRYTF 115
Query: 128 PFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
FV+KA ++ G A HG F + + N+LI F+A CGDL +A +F K
Sbjct: 116 TFVLKACSKLEWRSNGFAFHGKVVRHGFVLNEYVKNALILFHANCGDLGIASELFDDSAK 175
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLE 237
V+W+SM SG+ + G ++A+ L+ EM + D+V V+++ C K ++++
Sbjct: 176 AHKVAWSSMTSGYAKRGKIDEAMRLFDEMPYK----DQVAWNVMITGCLKCKEMD 226
Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 97/198 (48%), Gaps = 14/198 (7%)
Query: 52 FFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIF 111
+ D + + + T C ++ AR++FD+ + ++ TWN +I Y + P ++ IF
Sbjct: 206 YKDQVAWNVMITGCL--KCKEMDSARELFDRFTEKDVVTWNAMISGYVNCGYPKEALGIF 263
Query: 112 LQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVIS----------NSLI 161
++ ++ P+ T+ ++ A A G+ +H + +S N+LI
Sbjct: 264 KEM-RDAGEHPDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSSIYVGTPIWNALI 322
Query: 162 HFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEV 221
YA CG + A VF + +D+ +WN++I G E +IE++ EM+ V P+EV
Sbjct: 323 DMYAKCGSIDRAIEVFRGVKDRDLSTWNTLIVGLAL-HHAEGSIEMFEEMQRLKVWPNEV 381
Query: 222 TMVVVLSACAKKRDLEFG 239
T + V+ AC+ ++ G
Sbjct: 382 TFIGVILACSHSGRVDEG 399
Score = 37.4 bits (85), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 71/178 (39%), Gaps = 34/178 (19%)
Query: 71 SSLEYARKMFDQIPQPNLYTWNTLI--RAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLP 128
S++ A ++F + +L TWNTLI A ++ I+ F +L +PNE T
Sbjct: 329 GSIDRAIEVFRGVKDRDLSTWNTLIVGLALHHAEGSIEMFEEMQRL----KVWPNEVTFI 384
Query: 129 FVIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSW 188
VI A + + G+ + D I ++ H+ C+ M+G+
Sbjct: 385 GVILACSHSGRVDEGRKYFSLMRDMYNIEPNIKHY----------GCMVDMLGR------ 428
Query: 189 NSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
G E+A M++E P+ + +L AC ++E G + + +
Sbjct: 429 ---------AGQLEEAFMFVESMKIE---PNAIVWRTLLGACKIYGNVELGKYANEKL 474
>sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750
OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1
Length = 781
Score = 105 bits (263), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 86/161 (53%), Gaps = 6/161 (3%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
A+ +FD++P+ + +W +I YS S ++ +F+Q+ N + + A
Sbjct: 362 AKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRL-NRSSFSSALSTCA 420
Query: 136 RPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNS 190
V +G+ +HG +E + N+L+ Y CG + A +F + KD+VSWN+
Sbjct: 421 DVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNT 480
Query: 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
MI+G+ GF E A+ + M+ E +KPD+ TMV VLSAC+
Sbjct: 481 MIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACS 521
Score = 68.2 bits (165), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 98/199 (49%), Gaps = 10/199 (5%)
Query: 54 DPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIF-L 112
D S + + T A S ++ AR++FD+ P +++TW ++ Y IQ+ M+
Sbjct: 249 DVVSWNTIITGYAQS--GKIDEARQLFDESPVQDVFTWTAMVSGY------IQNRMVEEA 300
Query: 113 QLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFE-DDLVISNSLIHFYAVCGDLA 171
+ +++ NE + ++ + + + + + + ++ N++I YA CG ++
Sbjct: 301 RELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKIS 360
Query: 172 MAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231
A +F + K+D VSW +MI+G+ + G +A+ L+ +ME E + + + LS CA
Sbjct: 361 EAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCA 420
Query: 232 KKRDLEFGIWVSSHIEKNG 250
LE G + + K G
Sbjct: 421 DVVALELGKQLHGRLVKGG 439
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 80/163 (49%), Gaps = 8/163 (4%)
Query: 76 ARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135
AR +FD++P+ N +WN L+ AY + + ++ M+F + N FV K
Sbjct: 176 ARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKK-- 233
Query: 136 RPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGF 195
+ V+ R Q M D+V N++I YA G + A +F +DV +W +M+SG+
Sbjct: 234 KIVEAR--QFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGY 291
Query: 196 VEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEF 238
++ E+A EL+ +M N EV+ +L+ + +E
Sbjct: 292 IQNRMVEEARELFDKMPERN----EVSWNAMLAGYVQGERMEM 330
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 64/139 (46%), Gaps = 35/139 (25%)
Query: 74 EYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKA 133
E ARK+FD++P+ +L +WN +I+ Y V N
Sbjct: 112 ELARKLFDEMPERDLVSWNVMIKGY----------------VRNRNL------------G 143
Query: 134 AARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMIS 193
AR + F + M E D+ N+++ YA G + A VF + +K+ VSWN+++S
Sbjct: 144 KAREL-FEI------MPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLS 196
Query: 194 GFVEGGFFEKAIELYREME 212
+V+ E+A L++ E
Sbjct: 197 AYVQNSKMEEACMLFKSRE 215
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 75/157 (47%), Gaps = 10/157 (6%)
Query: 82 QIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFR 141
+ ++ WN I +Y + ++ +F ++ P + + + +I R +F
Sbjct: 58 KCGDSDIKEWNVAISSYMRTGRCNEALRVFKRM----PRWSS-VSYNGMISGYLRNGEFE 112
Query: 142 VGQAI-HGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGF 200
+ + + M E DLV N +I Y +L A +F ++ ++DV SWN+M+SG+ + G
Sbjct: 113 LARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGC 172
Query: 201 FEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLE 237
+ A ++ M +N +V+ +LSA + +E
Sbjct: 173 VDDARSVFDRMPEKN----DVSWNALLSAYVQNSKME 205
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 73/149 (48%), Gaps = 12/149 (8%)
Query: 72 SLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV- 130
+L AR++F+ +P+ ++ +WNT++ Y+ + + +F ++ + N +V
Sbjct: 141 NLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQ 200
Query: 131 ---IKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187
++ A + R A LV N L+ + + A F + +DVVS
Sbjct: 201 NSKMEEACMLFKSRENWA--------LVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVS 252
Query: 188 WNSMISGFVEGGFFEKAIELYREMEVENV 216
WN++I+G+ + G ++A +L+ E V++V
Sbjct: 253 WNTIITGYAQSGKIDEARQLFDESPVQDV 281
>sp|P93005|PP181_ARATH Pentatricopeptide repeat-containing protein At2g33680
OS=Arabidopsis thaliana GN=PCMP-E19 PE=3 SV=1
Length = 727
Score = 105 bits (263), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 117/220 (53%), Gaps = 9/220 (4%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K++H+ +L F ++ + L A + L ARK FD + + ++ W +LI Y
Sbjct: 342 KQLHSFLLKLGFERHLFATTALVDMYAKA--GCLADARKGFDCLQERDVALWTSLISGYV 399
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDL 154
+ + ++ +++ ++ + PN+ T+ V+KA + +G+ +HG F ++
Sbjct: 400 QNSDNEEALILYRRM-KTAGIIPNDPTMASVLKACSSLATLELGKQVHGHTIKHGFGLEV 458
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
I ++L Y+ CG L VF KDVVSWN+MISG G ++A+EL+ EM E
Sbjct: 459 PIGSALSTMYSKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDEALELFEEMLAE 518
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254
++PD+VT V ++SAC+ K +E G W ++ + I +D
Sbjct: 519 GMEPDDVTFVNIISACSHKGFVERG-WFYFNMMSDQIGLD 557
Score = 104 bits (260), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 101/193 (52%), Gaps = 6/193 (3%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127
S SL A KMFD N TW+ ++ YS + E +++ +F ++ +++ P+E+T+
Sbjct: 267 SKCESLNEACKMFDSSGDRNSITWSAMVTGYSQNGESLEAVKLFSRM-FSAGIKPSEYTI 325
Query: 128 PFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
V+ A + G+ +H FE L + +L+ YA G LA A F + +
Sbjct: 326 VGVLNACSDICYLEEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFDCLQE 385
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWV 242
+DV W S+ISG+V+ E+A+ LYR M+ + P++ TM VL AC+ LE G V
Sbjct: 386 RDVALWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQV 445
Query: 243 SSHIEKNGIKMDL 255
H K+G +++
Sbjct: 446 HGHTIKHGFGLEV 458
Score = 85.5 bits (210), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 124/249 (49%), Gaps = 15/249 (6%)
Query: 15 PNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLE 74
PN TL G + L + ++ HA ++ F D Y + L + +E
Sbjct: 116 PNAYTLA---GIFKAESSLQSSTVGRQAHALVVKMSSFGDIYVDTSLVGMYCKAGL--VE 170
Query: 75 YARKMFDQIPQPNLYTWNTLIRAYSSS---DEPIQSFMIFLQLVYNSPYFPNEFTLPFVI 131
K+F +P+ N YTW+T++ Y++ +E I+ F +FL+ +++ V+
Sbjct: 171 DGLKVFAYMPERNTYTWSTMVSGYATRGRVEEAIKVFNLFLR--EKEEGSDSDYVFTAVL 228
Query: 132 KAAARPVQFRVGQAIHGM-FEDDLV----ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVV 186
+ A + +G+ IH + ++ L+ +SN+L+ Y+ C L A +F G ++ +
Sbjct: 229 SSLAATIYVGLGRQIHCITIKNGLLGFVALSNALVTMYSKCESLNEACKMFDSSGDRNSI 288
Query: 187 SWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246
+W++M++G+ + G +A++L+ M +KP E T+V VL+AC+ LE G + S +
Sbjct: 289 TWSAMVTGYSQNGESLEAVKLFSRMFSAGIKPSEYTIVGVLNACSDICYLEEGKQLHSFL 348
Query: 247 EKNGIKMDL 255
K G + L
Sbjct: 349 LKLGFERHL 357
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 63/116 (54%), Gaps = 8/116 (6%)
Query: 122 PNEFTLPFVIKAAARPVQFRVGQAIHGMF-----EDDLVISNSLIHFYAVCGDLAMAYCV 176
P+ TL + ++ G+A+HG + +N L++FYA CG LA A+ +
Sbjct: 12 PHTSTLLKKLTHHSQQRNLVAGRAVHGQIIRTGASTCIQHANVLVNFYAKCGKLAKAHSI 71
Query: 177 FVMIGKKDVVSWNSMISGFVEGGFFEKA---IELYREMEVENVKPDEVTMVVVLSA 229
F I KDVVSWNS+I+G+ + G + ++L+REM +++ P+ T+ + A
Sbjct: 72 FNAIICKDVVSWNSLITGYSQNGGISSSYTVMQLFREMRAQDILPNAYTLAGIFKA 127
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/253 (24%), Positives = 108/253 (42%), Gaps = 28/253 (11%)
Query: 16 NPTTLTVNNGHQRHPHFLTNQKQL---KRIHAQMLSTDFFFDPYSASKL---FTPCALST 69
NP T T+ H + Q+ L + +H Q++ T A+ L + C
Sbjct: 11 NPHTSTLLKKLTHH----SQQRNLVAGRAVHGQIIRTGASTCIQHANVLVNFYAKCG--- 63
Query: 70 FSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSF--MIFLQLVYNSPYFPNEFTL 127
L A +F+ I ++ +WN+LI YS + S+ M + + PN +TL
Sbjct: 64 --KLAKAHSIFNAIICKDVVSWNSLITGYSQNGGISSSYTVMQLFREMRAQDILPNAYTL 121
Query: 128 PFVIKAAARPVQFRVGQAIHGMFE-----DDLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182
+ KA + VG+ H + D+ + SL+ Y G + VF + +
Sbjct: 122 AGIFKAESSLQSSTVGRQAHALVVKMSSFGDIYVDTSLVGMYCKAGLVEDGLKVFAYMPE 181
Query: 183 KDVVSWNSMISGFVEGGFFEKAIELY----REMEVENVKPDEVTMVVVLSACAKKRDLEF 238
++ +W++M+SG+ G E+AI+++ RE E E D V VLS+ A +
Sbjct: 182 RNTYTWSTMVSGYATRGRVEEAIKVFNLFLREKE-EGSDSDYV-FTAVLSSLAATIYVGL 239
Query: 239 GIWVSSHIEKNGI 251
G + KNG+
Sbjct: 240 GRQIHCITIKNGL 252
>sp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protein At4g33170
OS=Arabidopsis thaliana GN=PCMP-H53 PE=3 SV=1
Length = 990
Score = 105 bits (263), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 109/208 (52%), Gaps = 14/208 (6%)
Query: 32 FLTNQKQLKRIHAQMLSTDFFFDPYSAS---KLFTPCALSTFSSLEYARKMFDQIPQPNL 88
FL Q K++HA + + + D + +S ++ C S+ ++A FD IP P+
Sbjct: 529 FLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCG--DMSAAQFA---FDSIPVPDD 583
Query: 89 YTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG 148
W T+I + E ++F +F Q+ P+EFT+ + KA++ G+ IH
Sbjct: 584 VAWTTMISGCIENGEEERAFHVFSQMRLMG-VLPDEFTIATLAKASSCLTALEQGRQIHA 642
Query: 149 M-----FEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEK 203
+D + SL+ YA CG + AYC+F I ++ +WN+M+ G + G ++
Sbjct: 643 NALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKE 702
Query: 204 AIELYREMEVENVKPDEVTMVVVLSACA 231
++L+++M+ +KPD+VT + VLSAC+
Sbjct: 703 TLQLFKQMKSLGIKPDKVTFIGVLSACS 730
Score = 81.6 bits (200), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 105/222 (47%), Gaps = 13/222 (5%)
Query: 40 KRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS 99
K++H + + D + ++ L A S ++ A +F++ +L WN ++ Y+
Sbjct: 437 KQVHVHAIKINNVSDSFVSTALID--AYSRNRCMKEAEILFER-HNFDLVAWNAMMAGYT 493
Query: 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDL 154
S + ++ +F L++ ++FTL V K G+ +H ++ DL
Sbjct: 494 QSHDGHKTLKLF-ALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDL 552
Query: 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214
+S+ ++ Y CGD++ A F I D V+W +MISG +E G E+A ++ +M +
Sbjct: 553 WVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLM 612
Query: 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLT 256
V PDE T+ + A + LE G I N +K++ T
Sbjct: 613 GVLPDEFTIATLAKASSCLTALEQG----RQIHANALKLNCT 650
Score = 81.3 bits (199), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 87/166 (52%), Gaps = 11/166 (6%)
Query: 68 STFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPI-----QSFMIFLQLVYNSPYFP 122
S SL YAR++FD++P +L +WN+++ AY+ S E + Q+F++F +++ +
Sbjct: 85 SKCGSLTYARRVFDKMPDRDLVSWNSILAAYAQSSECVVENIQQAFLLF-RILRQDVVYT 143
Query: 123 NEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVF 177
+ TL ++K ++ HG + D ++ +L++ Y G + +F
Sbjct: 144 SRMTLSPMLKLCLHSGYVWASESFHGYACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLF 203
Query: 178 VMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTM 223
+ +DVV WN M+ ++E GF E+AI+L + P+E+T+
Sbjct: 204 EEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHSSGLNPNEITL 249
Score = 68.2 bits (165), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 97/197 (49%), Gaps = 11/197 (5%)
Query: 65 CALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNE 124
C L F +AR +FD + + +L +WN++I + + +++ +F+QL+ P++
Sbjct: 361 CKLRKFG---FARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLL-RCGLKPDQ 416
Query: 125 FTLPFVIKAAAR-PVQFRVGQAIHGMF-----EDDLVISNSLIHFYAVCGDLAMAYCVFV 178
+T+ V+KAA+ P + + +H D +S +LI Y+ + A +F
Sbjct: 417 YTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFE 476
Query: 179 MIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEF 238
D+V+WN+M++G+ + K ++L+ M + + D+ T+ V C +
Sbjct: 477 R-HNFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQ 535
Query: 239 GIWVSSHIEKNGIKMDL 255
G V ++ K+G +DL
Sbjct: 536 GKQVHAYAIKSGYDLDL 552
Score = 64.3 bits (155), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 71/137 (51%), Gaps = 8/137 (5%)
Query: 123 NEFTLPFVIKAAARPVQFRVGQAIHGM-----FEDDLVISNSLIHFYAVCGDLAMAYCVF 177
++ T ++ A + +GQ +H M + L +SNSLI+ Y A VF
Sbjct: 314 DQVTFILMLATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVF 373
Query: 178 VMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLE 237
+ ++D++SWNS+I+G + G +A+ L+ ++ +KPD+ TM VL A + L
Sbjct: 374 DNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASS---LP 430
Query: 238 FGIWVSSHIEKNGIKMD 254
G+ +S + + IK++
Sbjct: 431 EGLSLSKQVHVHAIKIN 447
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.137 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,377,451
Number of Sequences: 539616
Number of extensions: 3740471
Number of successful extensions: 13904
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 10372
Number of HSP's gapped (non-prelim): 2080
length of query: 258
length of database: 191,569,459
effective HSP length: 115
effective length of query: 143
effective length of database: 129,513,619
effective search space: 18520447517
effective search space used: 18520447517
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)