Query 038429
Match_columns 258
No_of_seqs 231 out of 1786
Neff 10.7
Searched_HMMs 46136
Date Fri Mar 29 10:58:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038429.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038429hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 2.2E-44 4.7E-49 321.3 20.4 239 12-256 219-463 (697)
2 PLN03218 maturation of RBCL 1; 100.0 1.4E-43 3.1E-48 321.0 18.2 240 11-256 536-790 (1060)
3 PLN03218 maturation of RBCL 1; 100.0 4.2E-43 9.2E-48 317.9 17.9 240 11-256 501-755 (1060)
4 PLN03081 pentatricopeptide (PP 100.0 1.5E-42 3.3E-47 309.4 20.8 240 12-257 118-362 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 1.1E-42 2.3E-47 316.9 20.1 242 10-257 180-426 (857)
6 PLN03077 Protein ECB2; Provisi 100.0 3.8E-41 8.3E-46 306.7 20.7 242 9-257 280-526 (857)
7 PRK11788 tetratricopeptide rep 99.7 1.1E-16 2.5E-21 134.3 16.6 217 31-254 118-352 (389)
8 PRK11788 tetratricopeptide rep 99.7 4.1E-16 9E-21 130.9 16.7 220 28-254 77-314 (389)
9 PF13041 PPR_2: PPR repeat fam 99.6 1.6E-15 3.4E-20 88.5 6.3 50 183-232 1-50 (50)
10 TIGR02917 PEP_TPR_lipo putativ 99.6 1.2E-13 2.5E-18 127.0 18.9 212 29-248 644-865 (899)
11 TIGR02917 PEP_TPR_lipo putativ 99.6 1.4E-13 3.1E-18 126.4 17.9 215 29-249 576-799 (899)
12 PF13041 PPR_2: PPR repeat fam 99.6 8.7E-15 1.9E-19 85.3 5.3 50 86-136 1-50 (50)
13 KOG4318 Bicoid mRNA stability 99.4 9.4E-12 2E-16 108.2 13.4 71 183-256 202-272 (1088)
14 PF13429 TPR_15: Tetratricopep 99.4 1.6E-12 3.4E-17 104.4 8.1 214 29-247 53-275 (280)
15 PRK15174 Vi polysaccharide exp 99.4 4.1E-11 9E-16 106.7 17.3 57 156-212 286-345 (656)
16 KOG4422 Uncharacterized conser 99.4 4.1E-11 8.8E-16 96.9 14.7 227 18-250 208-463 (625)
17 TIGR00990 3a0801s09 mitochondr 99.3 4.6E-10 9.9E-15 99.8 19.4 157 88-248 399-570 (615)
18 PRK15174 Vi polysaccharide exp 99.3 4.1E-10 8.8E-15 100.4 17.9 213 32-249 88-347 (656)
19 TIGR02521 type_IV_pilW type IV 99.2 9.9E-10 2.1E-14 84.9 16.9 192 53-249 29-232 (234)
20 PF13429 TPR_15: Tetratricopep 99.2 1.6E-11 3.4E-16 98.6 6.3 216 27-249 15-243 (280)
21 KOG4422 Uncharacterized conser 99.2 7.6E-10 1.7E-14 89.7 15.4 217 29-247 124-383 (625)
22 PRK10747 putative protoheme IX 99.2 2.5E-09 5.5E-14 90.0 19.0 212 29-247 127-388 (398)
23 TIGR00990 3a0801s09 mitochondr 99.2 3.1E-09 6.8E-14 94.5 19.1 213 33-249 307-537 (615)
24 PRK09782 bacteriophage N4 rece 99.2 3E-09 6.4E-14 97.9 18.3 208 34-249 490-706 (987)
25 PRK11447 cellulose synthase su 99.2 5.6E-09 1.2E-13 99.0 20.4 221 30-254 471-746 (1157)
26 TIGR02521 type_IV_pilW type IV 99.1 3.5E-09 7.5E-14 81.9 14.9 183 28-213 39-231 (234)
27 KOG4626 O-linked N-acetylgluco 99.1 2.1E-09 4.7E-14 90.9 12.7 216 29-254 261-488 (966)
28 KOG4626 O-linked N-acetylgluco 99.1 2.3E-09 5E-14 90.7 12.3 211 29-248 227-450 (966)
29 KOG4318 Bicoid mRNA stability 99.1 5.2E-10 1.1E-14 97.6 8.2 87 151-240 201-291 (1088)
30 PF12854 PPR_1: PPR repeat 99.1 1.7E-10 3.7E-15 60.8 3.3 34 214-247 1-34 (34)
31 TIGR00540 hemY_coli hemY prote 99.1 1.9E-08 4.1E-13 85.1 17.6 216 28-246 126-396 (409)
32 COG3071 HemY Uncharacterized e 99.1 5.9E-08 1.3E-12 78.1 18.8 223 28-255 126-396 (400)
33 KOG1840 Kinesin light chain [C 99.0 5.4E-09 1.2E-13 88.9 13.0 220 26-247 205-477 (508)
34 PRK12370 invasion protein regu 99.0 6.1E-08 1.3E-12 85.1 18.8 209 33-248 274-501 (553)
35 PRK11447 cellulose synthase su 99.0 6.1E-08 1.3E-12 92.1 20.0 212 29-248 278-523 (1157)
36 KOG1126 DNA-binding cell divis 99.0 1.1E-08 2.4E-13 87.0 13.3 217 23-248 356-619 (638)
37 KOG1126 DNA-binding cell divis 99.0 1E-08 2.3E-13 87.1 12.4 208 35-249 334-586 (638)
38 PRK09782 bacteriophage N4 rece 98.9 5.6E-08 1.2E-12 89.7 17.1 210 29-247 518-738 (987)
39 PF12854 PPR_1: PPR repeat 98.9 1.5E-09 3.3E-14 57.2 4.1 31 151-181 4-34 (34)
40 PRK12370 invasion protein regu 98.9 1E-07 2.3E-12 83.7 17.8 208 32-250 316-536 (553)
41 PRK10049 pgaA outer membrane p 98.9 2.3E-07 5E-12 84.6 18.8 145 27-177 22-173 (765)
42 KOG1155 Anaphase-promoting com 98.8 2.9E-07 6.2E-12 75.7 14.9 159 87-248 329-494 (559)
43 PRK14574 hmsH outer membrane p 98.8 1.2E-06 2.7E-11 79.5 20.3 148 29-181 43-196 (822)
44 PRK10049 pgaA outer membrane p 98.8 1.3E-06 2.8E-11 79.7 20.8 209 37-249 213-456 (765)
45 KOG2003 TPR repeat-containing 98.8 1.1E-06 2.4E-11 72.4 17.4 199 32-236 502-710 (840)
46 TIGR00756 PPR pentatricopeptid 98.7 2E-08 4.3E-13 53.4 4.3 33 187-219 2-34 (35)
47 COG2956 Predicted N-acetylgluc 98.7 9.1E-07 2E-11 69.7 14.6 212 34-250 49-279 (389)
48 PRK14574 hmsH outer membrane p 98.7 1.8E-06 3.9E-11 78.4 18.0 231 14-249 96-396 (822)
49 PF04733 Coatomer_E: Coatomer 98.7 1.2E-06 2.6E-11 70.4 14.8 186 57-247 37-228 (290)
50 TIGR00756 PPR pentatricopeptid 98.7 3.2E-08 6.9E-13 52.5 4.1 35 221-255 1-35 (35)
51 PRK11189 lipoprotein NlpI; Pro 98.7 3.7E-06 8E-11 68.0 17.6 213 31-250 37-266 (296)
52 COG2956 Predicted N-acetylgluc 98.7 1.3E-06 2.8E-11 68.9 13.8 197 15-214 64-278 (389)
53 PF13812 PPR_3: Pentatricopept 98.7 5.3E-08 1.2E-12 51.4 4.3 33 186-218 2-34 (34)
54 PF13812 PPR_3: Pentatricopept 98.6 9.8E-08 2.1E-12 50.3 4.1 33 221-253 2-34 (34)
55 KOG1155 Anaphase-promoting com 98.6 2.3E-06 5E-11 70.5 13.0 207 34-250 241-462 (559)
56 PRK10747 putative protoheme IX 98.6 6E-06 1.3E-10 69.7 16.0 179 28-213 195-389 (398)
57 KOG2003 TPR repeat-containing 98.5 6.6E-06 1.4E-10 67.9 14.9 172 72-248 505-688 (840)
58 PRK11189 lipoprotein NlpI; Pro 98.5 1.5E-05 3.2E-10 64.6 16.2 190 29-227 73-277 (296)
59 TIGR00540 hemY_coli hemY prote 98.5 1.7E-05 3.7E-10 67.3 16.9 180 28-212 195-397 (409)
60 KOG1840 Kinesin light chain [C 98.4 4.7E-06 1E-10 71.2 12.6 191 55-247 199-436 (508)
61 PF01535 PPR: PPR repeat; Int 98.4 3.2E-07 7E-12 47.2 3.7 29 187-215 2-30 (31)
62 COG3063 PilF Tfp pilus assembl 98.4 4.9E-05 1.1E-09 57.4 15.6 185 58-248 38-235 (250)
63 KOG1129 TPR repeat-containing 98.4 7.1E-06 1.5E-10 65.0 11.5 214 29-249 232-458 (478)
64 TIGR03302 OM_YfiO outer membra 98.4 3.3E-05 7.1E-10 60.3 14.7 59 191-249 172-232 (235)
65 PF01535 PPR: PPR repeat; Int 98.3 6.5E-07 1.4E-11 46.0 3.4 31 221-251 1-31 (31)
66 COG3071 HemY Uncharacterized e 98.3 5.8E-05 1.3E-09 61.3 15.9 195 59-255 86-298 (400)
67 PF04733 Coatomer_E: Coatomer 98.3 5.2E-06 1.1E-10 66.7 9.0 144 63-214 110-265 (290)
68 cd05804 StaR_like StaR_like; a 98.3 0.00052 1.1E-08 57.0 20.7 214 29-248 52-292 (355)
69 KOG2076 RNA polymerase III tra 98.3 0.00024 5.2E-09 63.3 18.9 211 33-248 152-477 (895)
70 KOG3081 Vesicle coat complex C 98.2 0.00017 3.8E-09 55.7 15.8 160 86-248 70-235 (299)
71 KOG1070 rRNA processing protei 98.2 7.7E-05 1.7E-09 69.2 16.3 194 54-253 1457-1667(1710)
72 KOG1070 rRNA processing protei 98.2 5.3E-05 1.2E-09 70.2 14.7 218 21-242 1459-1693(1710)
73 COG3063 PilF Tfp pilus assembl 98.2 0.00025 5.5E-09 53.7 15.6 193 28-225 43-245 (250)
74 PF12569 NARP1: NMDA receptor- 98.2 0.0004 8.6E-09 60.2 18.3 215 30-251 14-293 (517)
75 KOG1129 TPR repeat-containing 98.1 3.5E-05 7.5E-10 61.2 10.5 153 92-248 227-386 (478)
76 KOG2002 TPR-containing nuclear 98.1 2.6E-05 5.6E-10 69.7 10.8 216 29-248 505-744 (1018)
77 KOG1173 Anaphase-promoting com 98.1 8.4E-05 1.8E-09 62.9 13.0 190 52-247 309-516 (611)
78 KOG0547 Translocase of outer m 98.1 6.6E-05 1.4E-09 62.6 12.1 206 33-246 339-563 (606)
79 PF12569 NARP1: NMDA receptor- 98.1 0.00032 6.9E-09 60.7 16.7 219 29-248 47-333 (517)
80 COG5010 TadD Flp pilus assembl 98.1 0.00023 4.9E-09 54.9 13.2 150 92-244 70-226 (257)
81 TIGR03302 OM_YfiO outer membra 98.1 0.0002 4.2E-09 55.9 13.4 158 55-214 33-232 (235)
82 cd05804 StaR_like StaR_like; a 98.0 0.00059 1.3E-08 56.6 16.2 84 129-212 119-213 (355)
83 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 9.2E-05 2E-09 61.7 10.7 119 59-181 173-295 (395)
84 KOG2002 TPR-containing nuclear 98.0 0.00099 2.1E-08 60.1 16.9 207 36-249 252-481 (1018)
85 PRK15179 Vi polysaccharide bio 97.9 0.0004 8.7E-09 62.3 14.7 138 86-227 84-229 (694)
86 PF10037 MRP-S27: Mitochondria 97.9 6.5E-05 1.4E-09 63.0 8.8 115 50-167 61-186 (429)
87 PRK15359 type III secretion sy 97.9 8.1E-05 1.7E-09 53.5 8.0 61 153-213 57-120 (144)
88 KOG0547 Translocase of outer m 97.9 6.2E-05 1.3E-09 62.8 8.0 185 23-213 363-565 (606)
89 KOG2076 RNA polymerase III tra 97.9 0.00069 1.5E-08 60.5 14.7 183 68-254 152-350 (895)
90 KOG1128 Uncharacterized conser 97.9 0.00013 2.9E-09 63.5 9.9 180 57-247 426-614 (777)
91 PRK10370 formate-dependent nit 97.9 0.00033 7.2E-09 53.1 11.0 120 101-223 52-181 (198)
92 PRK15359 type III secretion sy 97.9 0.00038 8.2E-09 50.0 10.7 93 156-249 26-121 (144)
93 KOG1173 Anaphase-promoting com 97.8 0.00081 1.8E-08 57.2 13.6 195 29-232 321-534 (611)
94 PF09295 ChAPs: ChAPs (Chs5p-A 97.8 0.00026 5.6E-09 59.1 10.6 116 91-211 172-294 (395)
95 PF10037 MRP-S27: Mitochondria 97.8 0.00021 4.6E-09 60.0 9.9 114 120-233 62-186 (429)
96 PRK15179 Vi polysaccharide bio 97.8 0.00089 1.9E-08 60.2 14.4 133 55-192 86-229 (694)
97 COG5010 TadD Flp pilus assembl 97.8 0.0008 1.7E-08 51.9 12.1 148 59-210 70-227 (257)
98 COG4783 Putative Zn-dependent 97.8 0.00067 1.5E-08 56.7 12.1 110 98-209 316-432 (484)
99 KOG1125 TPR repeat-containing 97.8 0.0013 2.8E-08 56.1 13.8 212 29-247 294-525 (579)
100 PRK10370 formate-dependent nit 97.8 0.00087 1.9E-08 50.9 11.8 142 95-250 23-174 (198)
101 PF06239 ECSIT: Evolutionarily 97.7 0.00076 1.6E-08 50.9 10.7 114 76-235 33-153 (228)
102 KOG3785 Uncharacterized conser 97.7 0.0025 5.4E-08 51.6 13.9 188 56-250 286-491 (557)
103 KOG3616 Selective LIM binding 97.7 0.0013 2.9E-08 57.9 13.3 133 31-180 743-876 (1636)
104 KOG3616 Selective LIM binding 97.7 0.00047 1E-08 60.6 10.5 156 72-245 747-907 (1636)
105 KOG1174 Anaphase-promoting com 97.7 0.0019 4.1E-08 53.2 13.3 195 48-248 225-499 (564)
106 TIGR02552 LcrH_SycD type III s 97.7 0.00063 1.4E-08 48.0 9.7 85 129-213 22-113 (135)
107 PF08579 RPM2: Mitochondrial r 97.7 0.0006 1.3E-08 45.8 8.6 77 156-232 27-116 (120)
108 TIGR02552 LcrH_SycD type III s 97.6 0.00051 1.1E-08 48.5 8.6 95 154-249 17-114 (135)
109 KOG0495 HAT repeat protein [RN 97.6 0.011 2.3E-07 51.8 17.5 211 33-249 597-846 (913)
110 PF04840 Vps16_C: Vps16, C-ter 97.6 0.0081 1.8E-07 49.0 16.3 108 123-242 176-284 (319)
111 cd00189 TPR Tetratricopeptide 97.6 0.00074 1.6E-08 43.4 8.8 93 156-249 2-97 (100)
112 PF06239 ECSIT: Evolutionarily 97.6 0.00033 7.3E-09 52.7 7.3 101 37-140 31-154 (228)
113 KOG1915 Cell cycle control pro 97.6 0.0044 9.5E-08 52.1 14.2 144 32-181 85-234 (677)
114 PF09976 TPR_21: Tetratricopep 97.6 0.0024 5.1E-08 45.9 11.6 82 162-245 56-143 (145)
115 COG4783 Putative Zn-dependent 97.6 0.0091 2E-07 50.2 16.2 171 72-247 252-435 (484)
116 KOG1128 Uncharacterized conser 97.6 0.00028 6E-09 61.6 7.1 189 34-231 438-634 (777)
117 TIGR02795 tol_pal_ybgF tol-pal 97.5 0.0024 5.3E-08 43.6 10.6 96 155-250 3-106 (119)
118 PF05843 Suf: Suppressor of fo 97.5 0.0012 2.6E-08 53.0 10.0 138 89-230 2-150 (280)
119 KOG2047 mRNA splicing factor [ 97.5 0.014 3.1E-07 50.8 16.0 145 34-180 116-274 (835)
120 PF09976 TPR_21: Tetratricopep 97.4 0.0019 4.1E-08 46.4 9.5 51 160-210 91-143 (145)
121 KOG3081 Vesicle coat complex C 97.4 0.0054 1.2E-07 47.7 12.1 134 41-182 94-235 (299)
122 KOG0495 HAT repeat protein [RN 97.4 0.041 8.8E-07 48.3 18.2 182 61-248 590-781 (913)
123 PLN02789 farnesyltranstransfer 97.4 0.02 4.3E-07 46.9 16.0 210 33-247 50-300 (320)
124 KOG4340 Uncharacterized conser 97.4 0.0036 7.7E-08 49.6 10.7 189 58-253 13-211 (459)
125 PRK02603 photosystem I assembl 97.3 0.003 6.5E-08 46.8 9.6 82 87-169 34-121 (172)
126 PF08579 RPM2: Mitochondrial r 97.3 0.0012 2.7E-08 44.3 6.4 46 92-138 29-75 (120)
127 PF12921 ATP13: Mitochondrial 97.3 0.0047 1E-07 43.1 9.6 81 153-233 1-101 (126)
128 PF12895 Apc3: Anaphase-promot 97.3 0.00032 6.9E-09 45.3 3.5 52 159-210 30-83 (84)
129 KOG4162 Predicted calmodulin-b 97.3 0.019 4.1E-07 51.0 14.7 196 48-247 316-540 (799)
130 PRK14720 transcript cleavage f 97.2 0.015 3.2E-07 53.6 14.6 53 126-179 118-174 (906)
131 PF12921 ATP13: Mitochondrial 97.2 0.0028 6E-08 44.2 7.9 79 54-134 1-98 (126)
132 CHL00033 ycf3 photosystem I as 97.2 0.0043 9.3E-08 45.7 9.3 27 88-114 35-61 (168)
133 cd00189 TPR Tetratricopeptide 97.2 0.0015 3.3E-08 41.9 6.3 90 91-212 3-95 (100)
134 PRK04841 transcriptional regul 97.2 0.029 6.3E-07 52.7 16.4 218 30-249 501-760 (903)
135 PF05843 Suf: Suppressor of fo 97.2 0.0028 6.1E-08 50.9 8.3 124 125-249 2-136 (280)
136 KOG1156 N-terminal acetyltrans 97.1 0.083 1.8E-06 46.2 16.8 100 151-251 366-470 (700)
137 PF12895 Apc3: Anaphase-promot 97.1 0.0021 4.5E-08 41.4 5.6 78 33-113 2-83 (84)
138 PRK04841 transcriptional regul 97.1 0.044 9.5E-07 51.6 16.5 217 30-248 462-719 (903)
139 KOG4162 Predicted calmodulin-b 97.0 0.028 6E-07 50.0 13.7 227 19-248 477-782 (799)
140 KOG1915 Cell cycle control pro 97.0 0.015 3.4E-07 48.9 11.5 139 72-213 88-235 (677)
141 TIGR02795 tol_pal_ybgF tol-pal 97.0 0.0084 1.8E-07 40.9 8.7 96 90-214 4-105 (119)
142 KOG0985 Vesicle coat protein c 97.0 0.036 7.9E-07 51.0 14.3 86 55-147 1104-1189(1666)
143 PRK14720 transcript cleavage f 97.0 0.022 4.9E-07 52.4 13.4 61 153-214 115-178 (906)
144 KOG3060 Uncharacterized conser 97.0 0.054 1.2E-06 42.1 13.2 174 71-249 26-220 (289)
145 PF14938 SNAP: Soluble NSF att 96.9 0.01 2.2E-07 47.7 9.8 107 131-247 101-223 (282)
146 PLN03088 SGT1, suppressor of 96.9 0.0079 1.7E-07 50.1 9.1 59 155-213 37-98 (356)
147 KOG2376 Signal recognition par 96.9 0.039 8.4E-07 47.7 12.9 173 63-247 20-202 (652)
148 KOG2053 Mitochondrial inherita 96.9 0.2 4.2E-06 45.6 17.7 214 31-250 20-256 (932)
149 KOG3785 Uncharacterized conser 96.8 0.0074 1.6E-07 49.0 8.0 152 91-247 288-455 (557)
150 PRK15363 pathogenicity island 96.8 0.025 5.5E-07 40.7 10.0 85 129-213 40-131 (157)
151 PLN02789 farnesyltranstransfer 96.8 0.12 2.6E-06 42.4 15.1 193 33-249 33-250 (320)
152 KOG3060 Uncharacterized conser 96.8 0.15 3.1E-06 39.8 14.3 178 33-214 25-220 (289)
153 KOG1174 Anaphase-promoting com 96.8 0.09 1.9E-06 43.8 13.8 155 86-245 230-393 (564)
154 PRK15363 pathogenicity island 96.8 0.021 4.5E-07 41.2 9.1 101 78-180 24-129 (157)
155 KOG2376 Signal recognition par 96.8 0.12 2.5E-06 44.9 14.8 212 29-250 21-254 (652)
156 PLN03088 SGT1, suppressor of 96.7 0.019 4E-07 47.9 10.1 87 161-249 9-99 (356)
157 PF13432 TPR_16: Tetratricopep 96.7 0.0085 1.8E-07 36.3 6.1 55 193-249 5-60 (65)
158 PF03704 BTAD: Bacterial trans 96.7 0.012 2.6E-07 42.1 7.6 54 158-211 66-122 (146)
159 PF14559 TPR_19: Tetratricopep 96.7 0.0027 5.9E-08 38.8 3.6 47 167-213 4-53 (68)
160 PF04840 Vps16_C: Vps16, C-ter 96.6 0.083 1.8E-06 43.2 12.9 123 90-230 179-301 (319)
161 KOG0985 Vesicle coat protein c 96.6 0.26 5.7E-06 45.8 16.3 88 152-246 1131-1220(1666)
162 KOG1914 mRNA cleavage and poly 96.6 0.17 3.7E-06 43.6 14.4 141 105-247 348-499 (656)
163 KOG1125 TPR repeat-containing 96.5 0.04 8.7E-07 47.4 10.7 201 37-243 336-565 (579)
164 PRK02603 photosystem I assembl 96.5 0.071 1.5E-06 39.4 11.0 79 155-235 36-121 (172)
165 PF03704 BTAD: Bacterial trans 96.5 0.01 2.2E-07 42.5 6.3 69 186-255 63-136 (146)
166 PRK10153 DNA-binding transcrip 96.5 0.068 1.5E-06 46.8 12.3 129 119-249 332-482 (517)
167 KOG3617 WD40 and TPR repeat-co 96.5 0.38 8.2E-06 43.8 16.5 196 33-247 741-994 (1416)
168 PF12688 TPR_5: Tetratrico pep 96.5 0.035 7.5E-07 38.4 8.4 28 94-122 7-34 (120)
169 KOG1127 TPR repeat-containing 96.4 0.072 1.6E-06 49.0 11.9 153 57-213 494-658 (1238)
170 PRK10803 tol-pal system protei 96.4 0.06 1.3E-06 42.8 10.3 95 155-249 144-246 (263)
171 CHL00033 ycf3 photosystem I as 96.3 0.095 2.1E-06 38.5 10.8 91 154-246 35-139 (168)
172 PF14559 TPR_19: Tetratricopep 96.3 0.013 2.9E-07 35.7 5.2 50 33-85 4-53 (68)
173 PF13424 TPR_12: Tetratricopep 96.3 0.011 2.3E-07 37.3 4.7 61 187-247 7-73 (78)
174 PRK10866 outer membrane biogen 96.3 0.4 8.7E-06 37.7 14.9 57 191-247 181-239 (243)
175 PF13424 TPR_12: Tetratricopep 96.2 0.012 2.6E-07 37.1 4.5 58 155-212 6-73 (78)
176 PF13432 TPR_16: Tetratricopep 96.2 0.019 4.2E-07 34.6 5.3 55 160-214 3-60 (65)
177 KOG4340 Uncharacterized conser 96.1 0.53 1.1E-05 37.8 14.0 164 14-181 138-337 (459)
178 KOG3617 WD40 and TPR repeat-co 96.1 0.048 1E-06 49.2 9.2 146 85-246 723-884 (1416)
179 PRK10153 DNA-binding transcrip 96.1 0.059 1.3E-06 47.2 9.8 135 85-224 334-490 (517)
180 PF09205 DUF1955: Domain of un 96.1 0.18 3.9E-06 35.2 10.0 68 184-252 85-152 (161)
181 KOG3941 Intermediate in Toll s 96.1 0.04 8.8E-07 43.5 7.7 47 103-150 138-185 (406)
182 KOG2796 Uncharacterized conser 96.0 0.3 6.5E-06 38.4 12.0 165 58-227 139-326 (366)
183 KOG1156 N-terminal acetyltrans 96.0 0.65 1.4E-05 41.0 14.9 97 29-128 50-183 (700)
184 PF14938 SNAP: Soluble NSF att 95.9 0.13 2.8E-06 41.4 10.5 177 58-238 38-252 (282)
185 PF13414 TPR_11: TPR repeat; P 95.9 0.047 1E-06 33.3 6.3 62 185-248 3-66 (69)
186 PF13281 DUF4071: Domain of un 95.9 0.41 8.9E-06 39.9 13.2 73 59-134 145-227 (374)
187 PLN03098 LPA1 LOW PSII ACCUMUL 95.9 0.13 2.9E-06 43.5 10.4 64 151-214 72-141 (453)
188 KOG2047 mRNA splicing factor [ 95.9 1.2 2.6E-05 39.6 17.0 84 97-180 111-195 (835)
189 KOG2280 Vacuolar assembly/sort 95.8 0.11 2.4E-06 46.3 10.0 124 109-243 669-793 (829)
190 KOG2041 WD40 repeat protein [G 95.8 0.2 4.4E-06 44.5 11.4 143 90-248 798-951 (1189)
191 KOG0553 TPR repeat-containing 95.8 0.069 1.5E-06 42.4 7.9 95 134-230 91-192 (304)
192 PF10300 DUF3808: Protein of u 95.8 0.49 1.1E-05 41.1 13.9 156 91-247 191-374 (468)
193 PF13414 TPR_11: TPR repeat; P 95.8 0.026 5.7E-07 34.5 4.7 61 153-213 2-66 (69)
194 KOG3941 Intermediate in Toll s 95.7 0.15 3.2E-06 40.5 9.4 64 73-137 50-120 (406)
195 PF13371 TPR_9: Tetratricopept 95.6 0.068 1.5E-06 33.0 6.2 53 195-248 5-57 (73)
196 COG5107 RNA14 Pre-mRNA 3'-end 95.5 0.53 1.2E-05 39.9 12.3 140 88-231 397-546 (660)
197 PF00637 Clathrin: Region in C 95.5 0.022 4.7E-07 40.6 4.0 125 29-169 16-140 (143)
198 PF13371 TPR_9: Tetratricopept 95.4 0.095 2.1E-06 32.3 6.2 59 162-222 3-64 (73)
199 PF07035 Mic1: Colon cancer-as 95.3 0.54 1.2E-05 34.5 10.6 133 110-250 16-150 (167)
200 PF04053 Coatomer_WDAD: Coatom 95.3 0.46 1E-05 40.8 11.7 149 72-245 276-427 (443)
201 COG4700 Uncharacterized protei 95.2 0.92 2E-05 33.9 12.3 119 120-240 85-213 (251)
202 KOG2053 Mitochondrial inherita 94.7 0.49 1.1E-05 43.2 10.7 98 100-201 21-126 (932)
203 PRK10803 tol-pal system protei 94.7 0.28 6E-06 39.0 8.5 59 156-214 182-246 (263)
204 COG3898 Uncharacterized membra 94.7 2.2 4.8E-05 35.7 17.8 157 89-249 189-392 (531)
205 KOG0553 TPR repeat-containing 94.7 0.29 6.3E-06 39.0 8.3 84 163-248 90-177 (304)
206 KOG1914 mRNA cleavage and poly 94.7 0.68 1.5E-05 40.1 10.9 112 140-254 347-469 (656)
207 COG4235 Cytochrome c biogenesi 94.6 0.87 1.9E-05 36.4 10.9 99 151-250 153-257 (287)
208 COG4235 Cytochrome c biogenesi 94.6 0.41 8.8E-06 38.2 9.0 105 123-229 155-269 (287)
209 KOG1538 Uncharacterized conser 94.6 1.4 3E-05 39.2 12.7 189 44-250 624-847 (1081)
210 PF00637 Clathrin: Region in C 94.6 0.097 2.1E-06 37.3 5.2 129 94-236 13-141 (143)
211 PLN03098 LPA1 LOW PSII ACCUMUL 94.4 0.26 5.7E-06 41.8 7.9 64 184-249 74-141 (453)
212 smart00299 CLH Clathrin heavy 94.2 1.3 2.9E-05 31.2 10.7 78 31-114 18-95 (140)
213 PF09205 DUF1955: Domain of un 94.1 0.86 1.9E-05 31.9 8.6 80 138-217 70-152 (161)
214 PF13525 YfiO: Outer membrane 94.0 0.18 3.9E-06 38.4 5.9 166 72-240 20-198 (203)
215 PF12688 TPR_5: Tetratrico pep 94.0 0.26 5.5E-06 34.1 6.1 82 31-114 12-101 (120)
216 COG3629 DnrI DNA-binding trans 94.0 0.58 1.3E-05 37.4 8.8 78 153-230 152-237 (280)
217 KOG2796 Uncharacterized conser 94.0 0.56 1.2E-05 36.9 8.4 107 85-192 209-326 (366)
218 COG4700 Uncharacterized protei 93.7 2.2 4.8E-05 32.0 11.8 95 86-181 87-187 (251)
219 PRK15331 chaperone protein Sic 93.7 0.7 1.5E-05 33.7 8.0 80 134-213 47-133 (165)
220 PF13170 DUF4003: Protein of u 93.6 1.3 2.9E-05 35.9 10.4 123 104-229 78-226 (297)
221 PF07079 DUF1347: Protein of u 93.5 3.5 7.5E-05 35.2 12.7 135 29-167 15-180 (549)
222 COG3629 DnrI DNA-binding trans 93.5 0.62 1.4E-05 37.2 8.2 70 185-255 153-227 (280)
223 PF13762 MNE1: Mitochondrial s 93.3 0.85 1.8E-05 32.5 7.8 90 47-139 29-130 (145)
224 COG1729 Uncharacterized protei 93.1 1.3 2.7E-05 35.0 9.2 93 156-249 144-244 (262)
225 KOG0624 dsRNA-activated protei 93.0 4.5 9.7E-05 33.4 15.4 214 29-248 115-369 (504)
226 PF10300 DUF3808: Protein of u 93.0 1.9 4.2E-05 37.5 11.1 150 58-212 191-374 (468)
227 KOG1130 Predicted G-alpha GTPa 93.0 0.25 5.4E-06 41.3 5.3 218 29-249 26-344 (639)
228 PF04053 Coatomer_WDAD: Coatom 92.9 1 2.2E-05 38.7 9.3 133 55-210 295-427 (443)
229 KOG4570 Uncharacterized conser 92.9 0.62 1.4E-05 37.6 7.3 94 151-248 61-163 (418)
230 PF13929 mRNA_stabil: mRNA sta 92.5 2.8 6.2E-05 33.5 10.4 61 183-243 200-261 (292)
231 PF13176 TPR_7: Tetratricopept 92.4 0.29 6.4E-06 25.5 3.5 23 188-210 2-24 (36)
232 PF13176 TPR_7: Tetratricopept 92.4 0.24 5.1E-06 25.9 3.1 25 90-114 1-25 (36)
233 KOG1127 TPR repeat-containing 92.3 1.4 3E-05 41.2 9.4 148 29-181 501-657 (1238)
234 KOG2280 Vacuolar assembly/sort 91.9 2.1 4.5E-05 38.6 9.9 116 50-178 679-794 (829)
235 PRK15331 chaperone protein Sic 91.7 1 2.2E-05 32.8 6.6 46 134-179 81-130 (165)
236 PF13281 DUF4071: Domain of un 91.7 1.6 3.4E-05 36.5 8.5 98 15-114 136-252 (374)
237 PRK10866 outer membrane biogen 91.7 3.7 8E-05 32.3 10.4 145 65-212 42-239 (243)
238 KOG2041 WD40 repeat protein [G 91.5 5.3 0.00011 36.1 11.8 116 50-179 687-821 (1189)
239 KOG1585 Protein required for f 91.5 1.4 3E-05 34.4 7.4 88 156-244 152-251 (308)
240 KOG0543 FKBP-type peptidyl-pro 91.4 2 4.4E-05 35.9 8.8 93 153-247 256-353 (397)
241 PF10602 RPN7: 26S proteasome 91.0 1.1 2.3E-05 33.4 6.4 61 89-150 37-99 (177)
242 smart00299 CLH Clathrin heavy 91.0 4.1 9E-05 28.7 13.8 127 90-231 9-136 (140)
243 PF13512 TPR_18: Tetratricopep 91.0 4.3 9.4E-05 28.9 9.9 53 163-215 19-77 (142)
244 PF07035 Mic1: Colon cancer-as 90.6 5.3 0.00012 29.3 14.9 59 157-215 92-150 (167)
245 COG3118 Thioredoxin domain-con 90.5 3.9 8.3E-05 32.9 9.2 163 72-237 118-289 (304)
246 COG4105 ComL DNA uptake lipopr 90.3 7.6 0.00017 30.5 12.9 55 192-247 174-231 (254)
247 PF04184 ST7: ST7 protein; In 90.0 12 0.00026 32.5 12.8 60 91-150 262-321 (539)
248 PF08631 SPO22: Meiosis protei 89.8 9.1 0.0002 30.7 12.6 36 32-67 5-40 (278)
249 PF10602 RPN7: 26S proteasome 89.7 4 8.6E-05 30.4 8.5 92 155-246 37-139 (177)
250 PHA02875 ankyrin repeat protei 89.5 12 0.00026 31.8 12.9 207 32-255 11-230 (413)
251 KOG4570 Uncharacterized conser 89.5 0.87 1.9E-05 36.8 5.0 97 49-150 58-161 (418)
252 PF13762 MNE1: Mitochondrial s 89.3 6.3 0.00014 28.2 9.9 83 157-239 42-134 (145)
253 KOG2610 Uncharacterized conser 89.2 7.6 0.00017 32.0 10.1 146 99-246 114-273 (491)
254 PF02259 FAT: FAT domain; Int 89.0 8.8 0.00019 31.6 11.1 65 184-248 145-212 (352)
255 PF09613 HrpB1_HrpK: Bacterial 88.9 6 0.00013 28.8 8.6 49 134-182 20-72 (160)
256 PF13428 TPR_14: Tetratricopep 88.8 1 2.3E-05 24.6 3.8 28 222-249 3-30 (44)
257 COG3898 Uncharacterized membra 88.7 14 0.00029 31.3 13.3 122 58-181 85-215 (531)
258 COG5107 RNA14 Pre-mRNA 3'-end 88.5 4.7 0.0001 34.5 8.8 121 55-181 397-529 (660)
259 cd00923 Cyt_c_Oxidase_Va Cytoc 88.4 2.3 5E-05 28.0 5.6 43 205-247 27-69 (103)
260 KOG4555 TPR repeat-containing 88.0 4.6 9.9E-05 28.4 7.1 45 134-178 53-101 (175)
261 COG1729 Uncharacterized protei 87.9 1.5 3.2E-05 34.7 5.3 92 90-182 144-243 (262)
262 PF02284 COX5A: Cytochrome c o 87.7 2.3 4.9E-05 28.3 5.2 30 183-212 43-72 (108)
263 PF13374 TPR_10: Tetratricopep 87.6 1.3 2.8E-05 23.4 3.7 27 221-247 3-29 (42)
264 PF13525 YfiO: Outer membrane 87.5 11 0.00023 28.7 14.7 150 91-249 8-170 (203)
265 PF13374 TPR_10: Tetratricopep 87.2 1.6 3.4E-05 23.1 3.9 28 186-213 3-30 (42)
266 PF13428 TPR_14: Tetratricopep 87.0 3.1 6.8E-05 22.6 5.0 28 187-214 3-30 (44)
267 KOG0624 dsRNA-activated protei 87.0 16 0.00035 30.3 15.1 149 96-249 114-298 (504)
268 KOG0550 Molecular chaperone (D 86.6 9.4 0.0002 32.3 9.3 151 29-182 178-349 (486)
269 KOG0543 FKBP-type peptidyl-pro 86.4 3 6.6E-05 34.9 6.5 27 88-114 257-283 (397)
270 KOG4555 TPR repeat-containing 86.3 5 0.00011 28.2 6.5 48 97-146 52-99 (175)
271 KOG0548 Molecular co-chaperone 85.5 4.5 9.8E-05 35.1 7.3 97 132-230 10-114 (539)
272 KOG1920 IkappaB kinase complex 85.2 12 0.00026 35.9 10.3 168 29-210 860-1051(1265)
273 KOG0548 Molecular co-chaperone 84.9 6.1 0.00013 34.3 7.8 98 96-195 10-114 (539)
274 COG3947 Response regulator con 84.7 20 0.00043 29.1 11.3 197 36-246 103-339 (361)
275 KOG1920 IkappaB kinase complex 84.6 6.7 0.00015 37.5 8.4 88 121-212 932-1026(1265)
276 PF09613 HrpB1_HrpK: Bacterial 84.1 14 0.0003 26.9 9.5 47 99-150 21-70 (160)
277 PRK10564 maltose regulon perip 84.0 1.9 4.1E-05 34.7 4.2 30 188-217 260-289 (303)
278 TIGR02508 type_III_yscG type I 83.8 7.5 0.00016 25.9 6.1 82 139-223 20-105 (115)
279 PF11207 DUF2989: Protein of u 83.6 5.2 0.00011 30.3 6.2 22 183-204 176-197 (203)
280 PF04184 ST7: ST7 protein; In 83.6 15 0.00032 32.0 9.4 78 158-235 263-346 (539)
281 PF11848 DUF3368: Domain of un 83.5 5 0.00011 22.6 4.7 35 195-229 12-46 (48)
282 KOG1538 Uncharacterized conser 83.2 13 0.00027 33.6 9.1 50 91-150 750-799 (1081)
283 KOG1941 Acetylcholine receptor 83.1 7.4 0.00016 32.4 7.2 212 33-246 19-272 (518)
284 PF13431 TPR_17: Tetratricopep 83.1 1.5 3.2E-05 22.6 2.3 24 151-174 10-33 (34)
285 PF13170 DUF4003: Protein of u 82.9 5.9 0.00013 32.2 6.7 84 169-254 118-216 (297)
286 cd00923 Cyt_c_Oxidase_Va Cytoc 82.8 3.4 7.4E-05 27.2 4.3 32 118-149 36-67 (103)
287 TIGR03504 FimV_Cterm FimV C-te 82.3 2.5 5.5E-05 23.3 3.1 26 225-250 4-29 (44)
288 cd08819 CARD_MDA5_2 Caspase ac 82.1 8.1 0.00018 24.9 5.7 65 39-107 21-85 (88)
289 PF07721 TPR_4: Tetratricopept 81.3 3.8 8.2E-05 19.4 3.3 20 159-178 6-25 (26)
290 PF02284 COX5A: Cytochrome c o 80.5 2.8 6E-05 27.9 3.3 27 88-114 45-71 (108)
291 PF00515 TPR_1: Tetratricopept 80.4 4.5 9.8E-05 20.2 3.7 29 221-249 2-30 (34)
292 COG4455 ImpE Protein of avirul 80.4 12 0.00026 28.9 7.0 69 126-194 3-81 (273)
293 TIGR02561 HrpB1_HrpK type III 80.3 19 0.00042 25.9 8.3 14 101-114 23-36 (153)
294 COG4649 Uncharacterized protei 80.0 22 0.00048 26.5 8.1 126 87-214 58-196 (221)
295 PRK09687 putative lyase; Provi 79.5 31 0.00067 27.8 18.8 183 53-248 66-262 (280)
296 KOG2114 Vacuolar assembly/sort 79.4 35 0.00076 31.8 10.7 147 54-211 363-516 (933)
297 TIGR02561 HrpB1_HrpK type III 79.1 21 0.00046 25.7 8.5 46 167-214 23-73 (153)
298 PF07719 TPR_2: Tetratricopept 78.8 5.4 0.00012 19.8 3.7 28 222-249 3-30 (34)
299 PF14689 SPOB_a: Sensor_kinase 78.5 5 0.00011 24.0 3.9 46 201-248 6-51 (62)
300 KOG0276 Vesicle coat complex C 78.4 22 0.00047 31.9 8.8 24 155-178 667-690 (794)
301 PRK10564 maltose regulon perip 78.3 4.7 0.0001 32.5 4.7 37 216-252 252-289 (303)
302 PF11846 DUF3366: Domain of un 78.2 14 0.0003 27.8 7.1 32 216-247 140-171 (193)
303 PF13181 TPR_8: Tetratricopept 78.0 6.2 0.00013 19.6 3.7 27 222-248 3-29 (34)
304 PF10366 Vps39_1: Vacuolar sor 77.9 19 0.0004 24.3 7.3 29 185-213 39-67 (108)
305 KOG2610 Uncharacterized conser 77.2 32 0.0007 28.5 9.0 136 72-210 118-272 (491)
306 PF11663 Toxin_YhaV: Toxin wit 77.2 3.6 7.7E-05 28.9 3.2 33 196-230 106-138 (140)
307 PF08631 SPO22: Meiosis protei 77.0 37 0.00079 27.3 12.1 115 66-182 4-149 (278)
308 PF13174 TPR_6: Tetratricopept 76.6 4.9 0.00011 19.7 3.1 24 226-249 6-29 (33)
309 PF13512 TPR_18: Tetratricopep 76.5 21 0.00045 25.5 7.0 54 195-249 20-76 (142)
310 KOG4648 Uncharacterized conser 76.4 10 0.00022 31.3 6.1 40 134-173 107-150 (536)
311 PF09477 Type_III_YscG: Bacter 76.1 16 0.00034 24.7 5.8 75 139-215 21-99 (116)
312 PHA02875 ankyrin repeat protei 74.7 43 0.00093 28.4 10.0 175 64-255 8-196 (413)
313 PF07079 DUF1347: Protein of u 74.3 24 0.00051 30.5 7.8 121 72-197 21-179 (549)
314 PF02259 FAT: FAT domain; Int 73.6 49 0.0011 27.1 10.1 33 218-250 144-176 (352)
315 PF10579 Rapsyn_N: Rapsyn N-te 73.4 12 0.00025 23.7 4.5 47 197-243 18-66 (80)
316 PF13934 ELYS: Nuclear pore co 72.5 43 0.00093 26.0 8.9 22 160-181 114-135 (226)
317 PRK09687 putative lyase; Provi 72.3 50 0.0011 26.6 18.7 188 52-248 34-233 (280)
318 smart00638 LPD_N Lipoprotein N 71.7 76 0.0016 28.5 14.1 186 53-245 308-521 (574)
319 PF13929 mRNA_stabil: mRNA sta 71.2 54 0.0012 26.5 12.2 107 104-210 144-263 (292)
320 PF14669 Asp_Glu_race_2: Putat 70.9 43 0.00094 25.4 9.3 56 190-245 137-206 (233)
321 KOG4077 Cytochrome c oxidase, 70.9 19 0.00042 25.1 5.5 30 183-212 82-111 (149)
322 KOG2908 26S proteasome regulat 70.6 42 0.00091 27.8 8.2 83 157-239 78-176 (380)
323 COG4455 ImpE Protein of avirul 69.7 20 0.00044 27.7 5.9 57 92-150 5-61 (273)
324 KOG2114 Vacuolar assembly/sort 69.5 1E+02 0.0022 29.0 13.9 170 59-246 338-516 (933)
325 COG4105 ComL DNA uptake lipopr 69.4 50 0.0011 26.1 8.2 71 160-231 40-117 (254)
326 KOG2582 COP9 signalosome, subu 68.8 34 0.00074 28.6 7.4 116 135-250 194-346 (422)
327 COG0457 NrfG FOG: TPR repeat [ 68.8 43 0.00093 24.5 13.8 188 55-248 59-264 (291)
328 KOG0890 Protein kinase of the 68.1 1.7E+02 0.0037 31.1 13.8 152 30-191 1393-1552(2382)
329 PF07064 RIC1: RIC1; InterPro 68.1 60 0.0013 25.9 13.8 151 90-249 84-249 (258)
330 PF13934 ELYS: Nuclear pore co 67.3 57 0.0012 25.3 8.9 103 90-199 78-186 (226)
331 PF11207 DUF2989: Protein of u 66.1 18 0.00038 27.5 5.0 76 65-144 117-198 (203)
332 COG5159 RPN6 26S proteasome re 66.0 71 0.0015 26.0 10.0 48 93-141 8-62 (421)
333 PF11663 Toxin_YhaV: Toxin wit 65.6 9.8 0.00021 26.8 3.3 33 99-134 106-138 (140)
334 PF08311 Mad3_BUB1_I: Mad3/BUB 65.3 43 0.00094 23.2 8.1 57 187-245 67-124 (126)
335 COG1747 Uncharacterized N-term 64.0 1.1E+02 0.0023 27.3 14.1 157 86-249 64-234 (711)
336 PF11848 DUF3368: Domain of un 62.4 23 0.0005 19.8 4.0 38 95-133 9-46 (48)
337 KOG2908 26S proteasome regulat 61.5 51 0.0011 27.3 7.1 69 188-256 78-156 (380)
338 TIGR02508 type_III_yscG type I 61.3 47 0.001 22.3 7.4 78 36-119 21-98 (115)
339 PF11846 DUF3366: Domain of un 61.3 15 0.00032 27.6 4.0 29 152-180 142-170 (193)
340 PRK15180 Vi polysaccharide bio 60.9 35 0.00075 29.8 6.3 88 159-247 328-418 (831)
341 PF14669 Asp_Glu_race_2: Putat 60.6 49 0.0011 25.1 6.3 23 187-209 183-205 (233)
342 PF11817 Foie-gras_1: Foie gra 60.5 61 0.0013 25.5 7.5 77 171-247 162-245 (247)
343 PF14689 SPOB_a: Sensor_kinase 60.1 16 0.00035 21.8 3.2 44 170-213 6-51 (62)
344 KOG0403 Neoplastic transformat 59.8 25 0.00054 30.3 5.3 56 158-213 513-571 (645)
345 PF04097 Nic96: Nup93/Nic96; 59.8 1.4E+02 0.003 27.3 11.0 214 33-253 271-535 (613)
346 PF10366 Vps39_1: Vacuolar sor 59.3 32 0.0007 23.2 5.0 40 72-117 28-67 (108)
347 COG3118 Thioredoxin domain-con 59.2 97 0.0021 25.2 14.1 132 65-199 144-286 (304)
348 KOG4279 Serine/threonine prote 58.7 1.1E+02 0.0023 28.6 9.1 115 40-156 183-322 (1226)
349 COG2976 Uncharacterized protei 58.3 80 0.0017 24.0 8.1 121 88-214 54-188 (207)
350 COG3947 Response regulator con 57.8 57 0.0012 26.5 6.6 69 156-224 281-357 (361)
351 KOG4077 Cytochrome c oxidase, 57.7 23 0.00049 24.8 3.9 35 116-150 76-110 (149)
352 PF09454 Vps23_core: Vps23 cor 57.3 21 0.00046 21.6 3.4 51 181-232 4-54 (65)
353 cd07153 Fur_like Ferric uptake 57.2 33 0.00072 23.1 4.9 41 160-200 6-50 (116)
354 KOG2300 Uncharacterized conser 56.8 1.4E+02 0.003 26.3 12.6 147 97-244 332-509 (629)
355 smart00028 TPR Tetratricopepti 56.7 19 0.00042 16.4 3.1 25 188-212 4-28 (34)
356 KOG4567 GTPase-activating prot 56.5 1.1E+02 0.0024 25.1 8.5 73 108-181 263-345 (370)
357 PF12796 Ank_2: Ankyrin repeat 56.2 48 0.001 20.8 7.1 83 162-255 2-87 (89)
358 KOG0550 Molecular chaperone (D 55.9 1.1E+02 0.0023 26.4 8.2 83 30-114 259-347 (486)
359 KOG0403 Neoplastic transformat 54.8 95 0.0021 27.0 7.8 70 128-197 513-586 (645)
360 cd08819 CARD_MDA5_2 Caspase ac 54.8 56 0.0012 21.1 5.7 62 175-241 23-87 (88)
361 PF07163 Pex26: Pex26 protein; 54.7 62 0.0014 26.1 6.4 86 92-178 87-182 (309)
362 PF02847 MA3: MA3 domain; Int 54.3 63 0.0014 21.6 7.1 62 157-218 5-70 (113)
363 PRK11906 transcriptional regul 53.6 1.5E+02 0.0033 25.8 9.4 89 86-178 336-431 (458)
364 KOG1585 Protein required for f 52.6 1.2E+02 0.0025 24.2 8.6 81 127-208 153-250 (308)
365 COG4003 Uncharacterized protei 52.2 25 0.00053 22.3 3.1 26 225-250 36-61 (98)
366 PF10255 Paf67: RNA polymerase 52.1 97 0.0021 26.5 7.6 58 189-246 126-190 (404)
367 PF11768 DUF3312: Protein of u 52.0 1.6E+02 0.0035 26.2 9.0 26 89-114 409-434 (545)
368 COG0457 NrfG FOG: TPR repeat [ 51.9 90 0.0019 22.6 18.8 158 89-247 60-229 (291)
369 COG0735 Fur Fe2+/Zn2+ uptake r 51.8 63 0.0014 23.1 5.7 49 91-140 23-71 (145)
370 cd07153 Fur_like Ferric uptake 51.6 34 0.00073 23.1 4.2 48 93-141 5-52 (116)
371 PF12000 Glyco_trans_4_3: Gkyc 51.5 12 0.00026 27.7 2.0 22 237-258 51-72 (171)
372 PRK11639 zinc uptake transcrip 51.5 67 0.0015 23.6 6.0 51 89-140 26-76 (169)
373 PF01475 FUR: Ferric uptake re 51.4 27 0.00059 23.8 3.7 47 190-236 12-58 (120)
374 COG5108 RPO41 Mitochondrial DN 51.2 1.4E+02 0.003 27.5 8.5 41 129-169 33-80 (1117)
375 PF07163 Pex26: Pex26 protein; 49.1 66 0.0014 26.0 5.7 80 129-208 88-181 (309)
376 PF09477 Type_III_YscG: Bacter 49.0 83 0.0018 21.4 7.4 79 35-119 21-99 (116)
377 PRK11639 zinc uptake transcrip 48.9 1.1E+02 0.0023 22.6 7.1 22 201-222 41-62 (169)
378 KOG1550 Extracellular protein 47.4 2.1E+02 0.0046 25.7 12.6 172 74-251 229-428 (552)
379 KOG0276 Vesicle coat complex C 46.9 1.6E+02 0.0035 26.8 8.2 131 57-210 616-746 (794)
380 KOG1586 Protein required for f 46.3 1.5E+02 0.0032 23.5 8.6 139 72-217 29-186 (288)
381 COG2178 Predicted RNA-binding 45.0 1.4E+02 0.003 22.8 8.2 88 160-248 35-149 (204)
382 PHA03100 ankyrin repeat protei 45.0 2.1E+02 0.0045 24.8 12.0 139 31-181 43-200 (480)
383 PF01347 Vitellogenin_N: Lipop 44.5 2.4E+02 0.0053 25.5 10.4 185 56-246 347-566 (618)
384 PRK15180 Vi polysaccharide bio 44.3 1.1E+02 0.0025 26.8 6.8 112 99-213 300-419 (831)
385 COG4649 Uncharacterized protei 43.6 1.4E+02 0.003 22.5 12.0 125 125-250 60-197 (221)
386 PF09868 DUF2095: Uncharacteri 43.0 37 0.0008 23.1 3.1 26 225-250 66-91 (128)
387 PRK09857 putative transposase; 42.5 1.6E+02 0.0036 23.9 7.4 66 188-254 209-274 (292)
388 PF11838 ERAP1_C: ERAP1-like C 42.4 1.8E+02 0.004 23.5 14.0 177 64-244 47-261 (324)
389 KOG4648 Uncharacterized conser 42.3 47 0.001 27.7 4.1 48 95-145 104-152 (536)
390 PF11838 ERAP1_C: ERAP1-like C 41.8 1.9E+02 0.0041 23.4 11.5 138 91-232 132-287 (324)
391 smart00544 MA3 Domain in DAP-5 41.7 1.1E+02 0.0023 20.5 10.0 60 157-216 5-68 (113)
392 PHA02878 ankyrin repeat protei 41.1 2.4E+02 0.0053 24.5 12.3 114 130-255 171-295 (477)
393 KOG1586 Protein required for f 41.0 1.7E+02 0.0037 23.2 6.7 21 231-251 165-185 (288)
394 PF10255 Paf67: RNA polymerase 40.9 83 0.0018 26.9 5.6 94 87-180 74-190 (404)
395 cd00280 TRFH Telomeric Repeat 40.9 71 0.0015 24.1 4.5 20 161-180 118-137 (200)
396 COG0735 Fur Fe2+/Zn2+ uptake r 40.3 79 0.0017 22.6 4.8 20 196-215 31-50 (145)
397 PLN03192 Voltage-dependent pot 40.3 3.3E+02 0.0072 25.9 11.4 112 99-219 533-649 (823)
398 PF08542 Rep_fac_C: Replicatio 40.1 33 0.00071 21.8 2.6 48 184-233 4-51 (89)
399 PF09670 Cas_Cas02710: CRISPR- 39.7 1.4E+02 0.0031 25.3 6.9 16 166-181 143-158 (379)
400 PRK14956 DNA polymerase III su 38.9 2.8E+02 0.006 24.6 9.7 36 184-219 247-282 (484)
401 KOG0508 Ankyrin repeat protein 38.6 1.1E+02 0.0025 26.7 6.0 110 29-148 90-204 (615)
402 PRK13341 recombination factor 36.6 3.7E+02 0.0079 25.3 10.3 47 188-235 262-308 (725)
403 PF01475 FUR: Ferric uptake re 36.5 34 0.00073 23.3 2.3 49 92-141 11-59 (120)
404 PF04190 DUF410: Protein of un 36.2 2.2E+02 0.0048 22.6 9.6 82 152-248 88-169 (260)
405 cd00280 TRFH Telomeric Repeat 36.2 1.4E+02 0.003 22.6 5.4 63 170-235 85-158 (200)
406 smart00777 Mad3_BUB1_I Mad3/BU 35.7 1.5E+02 0.0033 20.6 7.3 43 202-244 80-123 (125)
407 PF11768 DUF3312: Protein of u 35.4 2.9E+02 0.0062 24.8 8.0 57 157-213 411-472 (545)
408 PF02607 B12-binding_2: B12 bi 34.9 50 0.0011 20.4 2.8 40 196-235 12-51 (79)
409 PF02847 MA3: MA3 domain; Int 34.2 71 0.0015 21.3 3.6 62 189-252 6-69 (113)
410 cd08326 CARD_CASP9 Caspase act 33.7 1.3E+02 0.0028 19.2 6.7 60 176-239 21-80 (84)
411 PF08967 DUF1884: Domain of un 32.8 39 0.00084 21.4 1.8 18 239-256 14-31 (85)
412 KOG1130 Predicted G-alpha GTPa 32.7 46 0.00099 28.5 2.8 20 164-183 27-46 (639)
413 smart00164 TBC Domain in Tre-2 32.5 1.4E+02 0.0031 22.2 5.4 47 205-251 151-198 (199)
414 PF12862 Apc5: Anaphase-promot 32.5 1.4E+02 0.003 19.2 5.9 15 232-246 53-67 (94)
415 PRK14963 DNA polymerase III su 32.4 3.6E+02 0.0079 24.0 10.3 38 181-219 238-275 (504)
416 KOG1464 COP9 signalosome, subu 32.4 2.7E+02 0.006 22.6 8.4 89 159-247 70-172 (440)
417 PF10475 DUF2450: Protein of u 32.3 1.8E+02 0.0039 23.5 6.2 26 89-114 128-153 (291)
418 COG2405 Predicted nucleic acid 31.8 1.1E+02 0.0023 21.9 4.0 59 171-230 96-154 (157)
419 PF05944 Phage_term_smal: Phag 31.4 1.9E+02 0.0041 20.4 5.4 27 190-216 53-79 (132)
420 KOG1524 WD40 repeat-containing 31.4 1.3E+02 0.0028 26.8 5.2 68 87-161 572-640 (737)
421 PRK11905 bifunctional proline 31.2 3.9E+02 0.0085 26.9 9.1 135 91-231 68-212 (1208)
422 COG2987 HutU Urocanate hydrata 30.9 83 0.0018 27.2 4.0 28 42-69 29-56 (561)
423 cd08790 DED_DEDD Death Effecto 30.7 64 0.0014 21.3 2.7 58 196-255 35-92 (97)
424 PF11123 DNA_Packaging_2: DNA 30.6 1.4E+02 0.003 18.6 4.1 31 72-102 12-45 (82)
425 PF03745 DUF309: Domain of unk 30.1 1.3E+02 0.0027 17.9 4.5 14 198-211 12-25 (62)
426 PRK14962 DNA polymerase III su 29.9 3.9E+02 0.0084 23.6 12.0 48 186-234 245-292 (472)
427 smart00804 TAP_C C-terminal do 29.6 58 0.0013 19.5 2.2 24 101-124 38-61 (63)
428 TIGR01914 cas_Csa4 CRISPR-asso 29.6 3.1E+02 0.0068 22.8 6.9 73 158-231 278-352 (354)
429 PRK12356 glutaminase; Reviewed 29.5 3.3E+02 0.0071 22.6 9.0 29 108-140 86-114 (319)
430 COG5108 RPO41 Mitochondrial DN 29.2 1.7E+02 0.0038 26.9 5.8 77 60-138 33-117 (1117)
431 KOG4334 Uncharacterized conser 28.8 91 0.002 27.2 3.9 56 14-69 519-574 (650)
432 PF11817 Foie-gras_1: Foie gra 28.8 74 0.0016 25.0 3.4 58 154-211 178-244 (247)
433 PRK14956 DNA polymerase III su 28.5 2.4E+02 0.0051 25.0 6.5 38 219-256 247-284 (484)
434 smart00031 DED Death effector 28.2 1.6E+02 0.0034 18.4 4.4 41 201-242 37-77 (79)
435 PF04090 RNA_pol_I_TF: RNA pol 28.0 2.8E+02 0.006 21.2 7.3 28 154-181 41-68 (199)
436 KOG4567 GTPase-activating prot 27.9 1.7E+02 0.0037 24.2 5.1 44 205-248 263-306 (370)
437 cd08812 CARD_RIG-I_like Caspas 27.4 1.3E+02 0.0029 19.3 3.8 32 168-199 48-80 (88)
438 PRK14015 pepN aminopeptidase N 27.4 5.7E+02 0.012 24.7 11.6 105 151-255 744-865 (875)
439 smart00386 HAT HAT (Half-A-TPR 27.4 80 0.0017 14.8 3.2 28 34-62 1-28 (33)
440 PF10475 DUF2450: Protein of u 27.0 1.2E+02 0.0026 24.5 4.4 22 218-239 195-216 (291)
441 PRK09462 fur ferric uptake reg 26.8 1.8E+02 0.0039 20.7 4.8 23 159-181 21-44 (148)
442 PHA03100 ankyrin repeat protei 25.7 4.4E+02 0.0095 22.8 12.9 170 40-220 86-278 (480)
443 PF04762 IKI3: IKI3 family; I 25.7 6.3E+02 0.014 24.6 9.5 26 59-84 816-841 (928)
444 PF02631 RecX: RecX family; I 25.7 1.7E+02 0.0038 19.8 4.4 10 207-216 48-57 (121)
445 TIGR02270 conserved hypothetic 25.5 4.4E+02 0.0096 22.7 18.3 89 151-246 189-278 (410)
446 PRK11906 transcriptional regul 25.4 4.7E+02 0.01 23.0 13.9 155 89-244 252-431 (458)
447 COG5210 GTPase-activating prot 25.3 1.7E+02 0.0037 25.9 5.2 48 205-252 362-409 (496)
448 PRK14958 DNA polymerase III su 25.0 4.1E+02 0.0089 23.7 7.5 73 45-123 190-279 (509)
449 KOG2297 Predicted translation 25.0 4E+02 0.0087 22.1 9.2 21 220-240 321-341 (412)
450 TIGR03184 DNA_S_dndE DNA sulfu 24.9 1.5E+02 0.0032 19.9 3.7 91 37-138 5-98 (105)
451 PF08986 DUF1889: Domain of un 24.9 1.9E+02 0.0041 19.0 4.0 48 170-217 25-79 (119)
452 TIGR01529 argR_whole arginine 24.7 1.6E+02 0.0034 21.1 4.1 40 191-230 6-45 (146)
453 PF09986 DUF2225: Uncharacteri 24.6 3.1E+02 0.0066 21.1 5.9 19 231-249 176-194 (214)
454 KOG2297 Predicted translation 24.4 4.2E+02 0.009 22.0 6.7 19 154-172 321-339 (412)
455 PRK09462 fur ferric uptake reg 24.1 2.7E+02 0.0058 19.8 5.4 48 92-140 20-68 (148)
456 cd08315 Death_TRAILR_DR4_DR5 D 24.1 2.2E+02 0.0047 18.7 5.4 49 201-251 47-95 (96)
457 cd08332 CARD_CASP2 Caspase act 24.1 2.1E+02 0.0045 18.5 6.8 56 177-236 26-81 (90)
458 PF07875 Coat_F: Coat F domain 24.1 88 0.0019 18.6 2.4 18 236-253 44-61 (64)
459 PF07575 Nucleopor_Nup85: Nup8 24.0 5.4E+02 0.012 23.2 9.2 94 153-248 371-466 (566)
460 PF11491 DUF3213: Protein of u 23.9 32 0.00069 21.8 0.4 25 116-140 16-40 (88)
461 KOG2659 LisH motif-containing 23.8 3E+02 0.0065 21.5 5.6 57 188-246 29-90 (228)
462 KOG1464 COP9 signalosome, subu 23.4 4.1E+02 0.0089 21.6 9.7 72 34-107 41-124 (440)
463 PRK11905 bifunctional proline 23.3 2.6E+02 0.0057 28.0 6.5 142 105-253 50-202 (1208)
464 COG0292 RplT Ribosomal protein 23.2 86 0.0019 21.3 2.3 46 48-96 66-111 (118)
465 PHA00425 DNA packaging protein 23.1 2.1E+02 0.0045 18.1 4.1 31 72-102 14-47 (88)
466 KOG0686 COP9 signalosome, subu 23.0 5E+02 0.011 22.5 7.5 85 157-243 153-252 (466)
467 PLN03192 Voltage-dependent pot 23.0 6.3E+02 0.014 24.1 8.8 117 128-254 527-649 (823)
468 TIGR02328 conserved hypothetic 22.9 74 0.0016 21.7 1.9 18 238-255 53-70 (120)
469 KOG3364 Membrane protein invol 22.8 2.4E+02 0.0051 20.2 4.5 44 170-213 51-99 (149)
470 PF08564 CDC37_C: Cdc37 C term 22.8 1E+02 0.0022 20.5 2.6 16 201-216 49-64 (99)
471 PF08870 DUF1832: Domain of un 22.5 1.7E+02 0.0036 20.0 3.7 35 102-138 62-96 (113)
472 PF12169 DNA_pol3_gamma3: DNA 22.3 1.1E+02 0.0024 21.4 3.0 33 185-218 15-47 (143)
473 TIGR01914 cas_Csa4 CRISPR-asso 22.3 2.4E+02 0.0051 23.5 5.0 62 72-135 291-352 (354)
474 PF07443 HARP: HepA-related pr 22.0 49 0.0011 19.3 0.9 31 102-133 6-36 (55)
475 PLN03025 replication factor C 21.9 4.5E+02 0.0097 21.5 8.5 87 30-122 155-257 (319)
476 PF07304 SRA1: Steroid recepto 21.9 1.5E+02 0.0032 21.6 3.6 18 230-247 100-117 (157)
477 COG5159 RPN6 26S proteasome re 21.8 3.4E+02 0.0074 22.3 5.7 52 193-244 11-69 (421)
478 PF00531 Death: Death domain; 21.7 1.6E+02 0.0034 18.1 3.4 41 202-244 41-81 (83)
479 PF07575 Nucleopor_Nup85: Nup8 21.5 1.3E+02 0.0027 27.2 3.8 36 79-114 396-431 (566)
480 PF03444 HrcA_DNA-bdg: Winged 21.4 2.3E+02 0.0049 17.9 3.8 21 158-178 11-31 (78)
481 KOG4414 COP9 signalosome, subu 21.4 89 0.0019 22.4 2.2 33 50-84 33-66 (197)
482 PRK11619 lytic murein transgly 21.3 6.6E+02 0.014 23.3 15.0 108 139-247 256-373 (644)
483 PRK06645 DNA polymerase III su 21.1 6E+02 0.013 22.7 9.2 35 184-219 257-291 (507)
484 PF14744 WASH-7_mid: WASH comp 21.0 2.4E+02 0.0053 23.6 4.9 47 201-249 282-328 (350)
485 KOG2422 Uncharacterized conser 21.0 6.4E+02 0.014 23.0 8.0 55 27-83 349-404 (665)
486 PRK13342 recombination factor 20.9 5.4E+02 0.012 22.1 9.6 48 187-234 229-279 (413)
487 PF00356 LacI: Bacterial regul 20.9 1.1E+02 0.0025 16.9 2.2 18 237-254 29-46 (46)
488 PRK12357 glutaminase; Reviewed 20.8 5E+02 0.011 21.6 9.4 23 108-134 90-112 (326)
489 PF14162 YozD: YozD-like prote 20.7 1.8E+02 0.004 16.6 4.1 20 202-221 12-31 (57)
490 KOG0508 Ankyrin repeat protein 20.7 1.9E+02 0.004 25.5 4.3 75 127-202 117-197 (615)
491 KOG1550 Extracellular protein 20.5 6.4E+02 0.014 22.7 10.2 145 104-250 228-394 (552)
492 TIGR02710 CRISPR-associated pr 20.4 3.8E+02 0.0081 22.9 6.0 19 164-182 140-158 (380)
493 smart00638 LPD_N Lipoprotein N 20.3 6.4E+02 0.014 22.7 11.8 151 84-240 306-480 (574)
494 PRK14951 DNA polymerase III su 20.3 5.3E+02 0.011 23.7 7.3 35 219-254 250-284 (618)
495 PF12968 DUF3856: Domain of Un 20.3 3.2E+02 0.0069 19.2 4.7 58 153-210 54-125 (144)
496 cd08789 CARD_IPS-1_RIG-I Caspa 20.2 2.5E+02 0.0054 17.9 5.1 38 197-239 44-81 (84)
497 TIGR01228 hutU urocanate hydra 20.1 2E+02 0.0043 25.4 4.4 42 43-84 21-67 (545)
498 KOG2066 Vacuolar assembly/sort 20.0 7.6E+02 0.016 23.5 11.5 144 62-213 363-533 (846)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.2e-44 Score=321.31 Aligned_cols=239 Identities=24% Similarity=0.393 Sum_probs=216.2
Q ss_pred CCCCCCceeeecCCCccCcccccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCCCChhhH
Q 038429 12 PRHPNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTW 91 (258)
Q Consensus 12 ~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~~~~~~~ 91 (258)
|..|+..++..++. .|...++.+.+.+++..+.+.|+.||..+||.||++|+++| ++++|.++|++|.++|+.+|
T Consensus 219 g~~p~~~t~~~ll~---a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g--~~~~A~~vf~~m~~~~~vt~ 293 (697)
T PLN03081 219 GSDAEPRTFVVMLR---ASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCG--DIEDARCVFDGMPEKTTVAW 293 (697)
T ss_pred CCCCChhhHHHHHH---HHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCC--CHHHHHHHHHhCCCCChhHH
Confidence 44455555544444 44555555555555555556666777778899999999999 99999999999999999999
Q ss_pred HHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc-----cCchhHHHHHHHHHHh
Q 038429 92 NTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF-----EDDLVISNSLIHFYAV 166 (258)
Q Consensus 92 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~li~~~~~ 166 (258)
|+||.+|++.|++++|+++|++| .+.|+.||..||++++.+|++.|+++.|.++++.| .||..+||+||++|++
T Consensus 294 n~li~~y~~~g~~~eA~~lf~~M-~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k 372 (697)
T PLN03081 294 NSMLAGYALHGYSEEALCLYYEM-RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSK 372 (697)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHH
Confidence 99999999999999999999999 99999999999999999999999999999999999 8999999999999999
Q ss_pred cCCHHHHHHHHHhcCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHH
Q 038429 167 CGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246 (258)
Q Consensus 167 ~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m 246 (258)
+|++++|.++|++|.+||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|++|
T Consensus 373 ~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m 452 (697)
T PLN03081 373 WGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSM 452 (697)
T ss_pred CCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HH-cCCccccc
Q 038429 247 EK-NGIKMDLT 256 (258)
Q Consensus 247 ~~-~g~~p~~~ 256 (258)
.+ .|+.||..
T Consensus 453 ~~~~g~~p~~~ 463 (697)
T PLN03081 453 SENHRIKPRAM 463 (697)
T ss_pred HHhcCCCCCcc
Confidence 75 79999864
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.4e-43 Score=321.01 Aligned_cols=240 Identities=18% Similarity=0.216 Sum_probs=159.1
Q ss_pred CCCCCCCceeeecCCCccCcccccchhhHHHHHHHHHh--hccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC---
Q 038429 11 IPRHPNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLS--TDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ--- 85 (258)
Q Consensus 11 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~--- 85 (258)
.+..||..+|+.++. .+++.|++++|.++|.+|.. .|+.||..+|+.+|.+|++.| ++++|.++|++|.+
T Consensus 536 ~Gv~PD~vTYnsLI~---a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G--~ldeA~elf~~M~e~gi 610 (1060)
T PLN03218 536 KNVKPDRVVFNALIS---ACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAG--QVDRAKEVYQMIHEYNI 610 (1060)
T ss_pred cCCCCCHHHHHHHHH---HHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHcCC
Confidence 445555555555555 55555555555555555544 345555555555555555555 55555555555543
Q ss_pred -CChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc-----cCchhHHHH
Q 038429 86 -PNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF-----EDDLVISNS 159 (258)
Q Consensus 86 -~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~ 159 (258)
|+..+||.+|.+|++.|++++|.++|++| .+.|+.||..||+.+|++|++.|++++|.++++.| .||..+|++
T Consensus 611 ~p~~~tynsLI~ay~k~G~~deAl~lf~eM-~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tyns 689 (1060)
T PLN03218 611 KGTPEVYTIAVNSCSQKGDWDFALSIYDDM-KKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSS 689 (1060)
T ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 45566666666666666666666666666 56666666666666666666666666666666666 567777777
Q ss_pred HHHHHHhcCCHHHHHHHHHhcC----CCChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCC
Q 038429 160 LIHFYAVCGDLAMAYCVFVMIG----KKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRD 235 (258)
Q Consensus 160 li~~~~~~g~~~~a~~~~~~m~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~ 235 (258)
||.+|++.|++++|.++|++|. .||..+||.||.+|++.|++++|.++|++|...|+.||..||+.++.+|++.|+
T Consensus 690 LI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~ 769 (1060)
T PLN03218 690 LMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDD 769 (1060)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC
Confidence 7777777777777777777764 467777777777777777777777777777777777777777777777777777
Q ss_pred hhHHHHHHHHHHHcCCccccc
Q 038429 236 LEFGIWVSSHIEKNGIKMDLT 256 (258)
Q Consensus 236 ~~~a~~~~~~m~~~g~~p~~~ 256 (258)
+++|.+++++|.+.|+.||..
T Consensus 770 le~A~~l~~~M~k~Gi~pd~~ 790 (1060)
T PLN03218 770 ADVGLDLLSQAKEDGIKPNLV 790 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHH
Confidence 777777777777777777754
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=4.2e-43 Score=317.95 Aligned_cols=240 Identities=16% Similarity=0.189 Sum_probs=159.2
Q ss_pred CCCCCCCceeeecCCCccCcccccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCC------
Q 038429 11 IPRHPNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIP------ 84 (258)
Q Consensus 11 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~------ 84 (258)
.|..||..+|+.++. .+++.|++++|.++|+.|.+.|+.||..+|+.||.+|++.| ++++|.++|++|.
T Consensus 501 ~Gv~PdvvTynaLI~---gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G--~~deA~~lf~eM~~~~~gi 575 (1060)
T PLN03218 501 AGVEANVHTFGALID---GCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSG--AVDRAFDVLAEMKAETHPI 575 (1060)
T ss_pred cCCCCCHHHHHHHHH---HHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhcCCC
Confidence 445556666555555 55566666666666666666666666666666666666666 6666666666552
Q ss_pred CCChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc-----cCchhHHHH
Q 038429 85 QPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF-----EDDLVISNS 159 (258)
Q Consensus 85 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~ 159 (258)
.||..+|+++|.+|++.|++++|.++|+.| .+.|++|+..+|+.+|.+|++.|++++|..+|+.| .||..+|++
T Consensus 576 ~PD~vTynaLI~ay~k~G~ldeA~elf~~M-~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~Tyns 654 (1060)
T PLN03218 576 DPDHITVGALMKACANAGQVDRAKEVYQMI-HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSA 654 (1060)
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 256666666666666666666666666666 55666666666666666666666666666666666 566666666
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC----CChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCC
Q 038429 160 LIHFYAVCGDLAMAYCVFVMIGK----KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRD 235 (258)
Q Consensus 160 li~~~~~~g~~~~a~~~~~~m~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~ 235 (258)
+|++|++.|++++|.++|++|.+ ||..+|++||.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|+
T Consensus 655 LI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~ 734 (1060)
T PLN03218 655 LVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQ 734 (1060)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC
Confidence 66666666666666666666653 57777777777777777777777777777777777777777777777777777
Q ss_pred hhHHHHHHHHHHHcCCccccc
Q 038429 236 LEFGIWVSSHIEKNGIKMDLT 256 (258)
Q Consensus 236 ~~~a~~~~~~m~~~g~~p~~~ 256 (258)
+++|.++|++|.+.|+.||.+
T Consensus 735 ~eeAlelf~eM~~~Gi~Pd~~ 755 (1060)
T PLN03218 735 LPKALEVLSEMKRLGLCPNTI 755 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHH
Confidence 777777777777777777754
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.5e-42 Score=309.44 Aligned_cols=240 Identities=25% Similarity=0.399 Sum_probs=233.2
Q ss_pred CCCCCCceeeecCCCccCcccccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCCCChhhH
Q 038429 12 PRHPNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTW 91 (258)
Q Consensus 12 ~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~~~~~~~ 91 (258)
+..|+..+|..++. +|.+.++++.+.+++..|.+.|+.||..+||.|+.+|++.| +++.|.++|++|.+||..+|
T Consensus 118 ~~~~~~~t~~~ll~---a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g--~~~~A~~lf~~m~~~~~~t~ 192 (697)
T PLN03081 118 PFTLPASTYDALVE---ACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCG--MLIDARRLFDEMPERNLASW 192 (697)
T ss_pred CCCCCHHHHHHHHH---HHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCC--CHHHHHHHHhcCCCCCeeeH
Confidence 45789999988888 99999999999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc-----cCchhHHHHHHHHHHh
Q 038429 92 NTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF-----EDDLVISNSLIHFYAV 166 (258)
Q Consensus 92 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~li~~~~~ 166 (258)
|.+|.+|++.|++++|+++|++| .+.|+.|+..||+.++.+|++.|+.+.+.+++..+ .+|..+||+||++|++
T Consensus 193 n~li~~~~~~g~~~~A~~lf~~M-~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k 271 (697)
T PLN03081 193 GTIIGGLVDAGNYREAFALFREM-WEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSK 271 (697)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHH-HHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHH
Confidence 99999999999999999999999 89999999999999999999999999999999888 8999999999999999
Q ss_pred cCCHHHHHHHHHhcCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHH
Q 038429 167 CGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246 (258)
Q Consensus 167 ~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m 246 (258)
.|++++|.++|+.|.++|+.+||.||.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++.+|
T Consensus 272 ~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m 351 (697)
T PLN03081 272 CGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGL 351 (697)
T ss_pred CCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCcccccC
Q 038429 247 EKNGIKMDLTF 257 (258)
Q Consensus 247 ~~~g~~p~~~~ 257 (258)
.+.|+.||+++
T Consensus 352 ~~~g~~~d~~~ 362 (697)
T PLN03081 352 IRTGFPLDIVA 362 (697)
T ss_pred HHhCCCCCeee
Confidence 99999999865
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.1e-42 Score=316.89 Aligned_cols=242 Identities=29% Similarity=0.450 Sum_probs=231.1
Q ss_pred cCCCCCCCceeeecCCCccCcccccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCCCChh
Q 038429 10 SIPRHPNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLY 89 (258)
Q Consensus 10 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~~~~~ 89 (258)
..|..||..||..++. +|+..++++.+.+++..|.+.|+.||..++|.||.+|+++| ++++|.++|++|.++|..
T Consensus 180 ~~g~~Pd~~t~~~ll~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g--~~~~A~~lf~~m~~~d~~ 254 (857)
T PLN03077 180 WAGVRPDVYTFPCVLR---TCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCG--DVVSARLVFDRMPRRDCI 254 (857)
T ss_pred HcCCCCChhHHHHHHH---HhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCC--CHHHHHHHHhcCCCCCcc
Confidence 3477888888888777 78888888888888888888888889999999999999999 999999999999999999
Q ss_pred hHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc-----cCchhHHHHHHHHH
Q 038429 90 TWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF-----EDDLVISNSLIHFY 164 (258)
Q Consensus 90 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~li~~~ 164 (258)
+||++|.+|++.|++++|+++|++| ...|+.||..||+.+|.+|++.|+++.|.+++..+ .||..+||+||.+|
T Consensus 255 s~n~li~~~~~~g~~~eAl~lf~~M-~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y 333 (857)
T PLN03077 255 SWNAMISGYFENGECLEGLELFFTM-RELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMY 333 (857)
T ss_pred hhHHHHHHHHhCCCHHHHHHHHHHH-HHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHH
Confidence 9999999999999999999999999 99999999999999999999999999999999999 89999999999999
Q ss_pred HhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHH
Q 038429 165 AVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSS 244 (258)
Q Consensus 165 ~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~ 244 (258)
++.|++++|.++|++|.+||..+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++
T Consensus 334 ~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~ 413 (857)
T PLN03077 334 LSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHE 413 (857)
T ss_pred HhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCcccccC
Q 038429 245 HIEKNGIKMDLTF 257 (258)
Q Consensus 245 ~m~~~g~~p~~~~ 257 (258)
+|.+.|+.||+.+
T Consensus 414 ~~~~~g~~~~~~~ 426 (857)
T PLN03077 414 LAERKGLISYVVV 426 (857)
T ss_pred HHHHhCCCcchHH
Confidence 9999999998764
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.8e-41 Score=306.74 Aligned_cols=242 Identities=26% Similarity=0.411 Sum_probs=234.5
Q ss_pred ccCCCCCCCceeeecCCCccCcccccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCCCCh
Q 038429 9 ISIPRHPNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNL 88 (258)
Q Consensus 9 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~~~~ 88 (258)
...|..||..||..++. +|.+.|+++.+.+++..|.+.|+.||..+||.||.+|+++| ++++|.++|++|.+||.
T Consensus 280 ~~~g~~Pd~~ty~~ll~---a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g--~~~~A~~vf~~m~~~d~ 354 (857)
T PLN03077 280 RELSVDPDLMTITSVIS---ACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLG--SWGEAEKVFSRMETKDA 354 (857)
T ss_pred HHcCCCCChhHHHHHHH---HHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcC--CHHHHHHHHhhCCCCCe
Confidence 35688999999999988 99999999999999999999999999999999999999999 99999999999999999
Q ss_pred hhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc-----cCchhHHHHHHHH
Q 038429 89 YTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF-----EDDLVISNSLIHF 163 (258)
Q Consensus 89 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~li~~ 163 (258)
.+||++|.+|++.|++++|+++|++| .+.|+.||..||+.++.+|++.|+++.|.++++.+ .|+..+||+||++
T Consensus 355 ~s~n~li~~~~~~g~~~~A~~lf~~M-~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~ 433 (857)
T PLN03077 355 VSWTAMISGYEKNGLPDKALETYALM-EQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEM 433 (857)
T ss_pred eeHHHHHHHHHhCCCHHHHHHHHHHH-HHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 99999999999999999999999999 99999999999999999999999999999999999 8999999999999
Q ss_pred HHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHH
Q 038429 164 YAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVS 243 (258)
Q Consensus 164 ~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~ 243 (258)
|++.|++++|.++|++|.++|..+||.+|.+|++.|+.++|+.+|++|.. +++||..||+.+|.+|++.|+++.+.+++
T Consensus 434 y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~ 512 (857)
T PLN03077 434 YSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIH 512 (857)
T ss_pred HHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHH
Confidence 99999999999999999999999999999999999999999999999986 69999999999999999999999999999
Q ss_pred HHHHHcCCcccccC
Q 038429 244 SHIEKNGIKMDLTF 257 (258)
Q Consensus 244 ~~m~~~g~~p~~~~ 257 (258)
..+.+.|+.+|.++
T Consensus 513 ~~~~~~g~~~~~~~ 526 (857)
T PLN03077 513 AHVLRTGIGFDGFL 526 (857)
T ss_pred HHHHHhCCCcccee
Confidence 99999999999775
No 7
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.74 E-value=1.1e-16 Score=134.26 Aligned_cols=217 Identities=9% Similarity=-0.007 Sum_probs=105.8
Q ss_pred ccccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC--CC------hhhHHHHHHHHhcCC
Q 038429 31 HFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ--PN------LYTWNTLIRAYSSSD 102 (258)
Q Consensus 31 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~--~~------~~~~~~li~~~~~~g 102 (258)
...|+++.|..+|..+.+.. +.+..+++.++..+.+.| ++++|...++.+.+ |+ ...|..+...+.+.|
T Consensus 118 ~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 194 (389)
T PRK11788 118 LKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEK--DWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARG 194 (389)
T ss_pred HHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhc--hHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCC
Confidence 33444444444444444332 223344444444444444 44444444444422 10 112333444444455
Q ss_pred ChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc---cCc--hhHHHHHHHHHHhcCCHHHHHHHH
Q 038429 103 EPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF---EDD--LVISNSLIHFYAVCGDLAMAYCVF 177 (258)
Q Consensus 103 ~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~---~~~--~~~~~~li~~~~~~g~~~~a~~~~ 177 (258)
++++|...|+++ .+.. +.+..++..+...+.+.|++++|...++.+ .|+ ..+++.+..+|.+.|++++|.+.+
T Consensus 195 ~~~~A~~~~~~a-l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l 272 (389)
T PRK11788 195 DLDAARALLKKA-LAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFL 272 (389)
T ss_pred CHHHHHHHHHHH-HhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 555555555544 2211 112234444445555555555555555554 222 234455555555555555555555
Q ss_pred HhcCC--CChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhc---cCChhHHHHHHHHHHHcCCc
Q 038429 178 VMIGK--KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAK---KRDLEFGIWVSSHIEKNGIK 252 (258)
Q Consensus 178 ~~m~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~---~g~~~~a~~~~~~m~~~g~~ 252 (258)
+.+.+ |+...+..+...+.+.|++++|..+++++.+. .|+..+++.++..+.. .|+.+++..++++|.+.++.
T Consensus 273 ~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~ 350 (389)
T PRK11788 273 RRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLK 350 (389)
T ss_pred HHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHh
Confidence 55432 44444555556666666666666666655543 3566666655555543 34566666666666665555
Q ss_pred cc
Q 038429 253 MD 254 (258)
Q Consensus 253 p~ 254 (258)
||
T Consensus 351 ~~ 352 (389)
T PRK11788 351 RK 352 (389)
T ss_pred CC
Confidence 54
No 8
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.72 E-value=4.1e-16 Score=130.87 Aligned_cols=220 Identities=12% Similarity=0.017 Sum_probs=176.4
Q ss_pred cCcccccchhhHHHHHHHHHhhccCcc---hhhhhhhhhhhhccCCCChHHHHHHhccCCC---CChhhHHHHHHHHhcC
Q 038429 28 RHPHFLTNQKQLKRIHAQMLSTDFFFD---PYSASKLFTPCALSTFSSLEYARKMFDQIPQ---PNLYTWNTLIRAYSSS 101 (258)
Q Consensus 28 ~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~ 101 (258)
..+...|++++|..+++.+...+..++ ...+..+...|.+.| +++.|..+|+++.+ .+..+++.++..+.+.
T Consensus 77 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g--~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~ 154 (389)
T PRK11788 77 NLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG--LLDRAEELFLQLVDEGDFAEGALQQLLEIYQQE 154 (389)
T ss_pred HHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHh
Confidence 366778899999999998887543222 246788888899989 99999999988865 5677899999999999
Q ss_pred CChhhHHHHHHHhHhcCCCCCCc----chHHHHHHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhcCCHHHH
Q 038429 102 DEPIQSFMIFLQLVYNSPYFPNE----FTLPFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMA 173 (258)
Q Consensus 102 g~~~~a~~~~~~m~~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a 173 (258)
|++++|.+.++.+ .+.+..++. ..+..+...+.+.|++++|...++.+ +.+...+..+...|.+.|++++|
T Consensus 155 g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 233 (389)
T PRK11788 155 KDWQKAIDVAERL-EKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAA 233 (389)
T ss_pred chHHHHHHHHHHH-HHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHH
Confidence 9999999999998 444322221 23456777788899999999999887 44456788888999999999999
Q ss_pred HHHHHhcCC--CC--hhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHc
Q 038429 174 YCVFVMIGK--KD--VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249 (258)
Q Consensus 174 ~~~~~~m~~--~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 249 (258)
.+.|+++.+ |+ ..+++.+..+|...|++++|...++++.+. .|+...+..+...+.+.|++++|..+++++.+.
T Consensus 234 ~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~ 311 (389)
T PRK11788 234 IEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR 311 (389)
T ss_pred HHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999998874 43 356788999999999999999999998875 477777888999999999999999999988765
Q ss_pred CCccc
Q 038429 250 GIKMD 254 (258)
Q Consensus 250 g~~p~ 254 (258)
.|+
T Consensus 312 --~P~ 314 (389)
T PRK11788 312 --HPS 314 (389)
T ss_pred --CcC
Confidence 354
No 9
>PF13041 PPR_2: PPR repeat family
Probab=99.62 E-value=1.6e-15 Score=88.47 Aligned_cols=50 Identities=38% Similarity=0.765 Sum_probs=48.6
Q ss_pred CChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhc
Q 038429 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAK 232 (258)
Q Consensus 183 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~ 232 (258)
||+.+||++|.+|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999985
No 10
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.59 E-value=1.2e-13 Score=127.03 Aligned_cols=212 Identities=10% Similarity=0.009 Sum_probs=118.6
Q ss_pred CcccccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC---CChhhHHHHHHHHhcCCChh
Q 038429 29 HPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ---PNLYTWNTLIRAYSSSDEPI 105 (258)
Q Consensus 29 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~ 105 (258)
.+...|++++|..++..+.+.. +.+...+..+...+...| ++++|..+++.+.+ .+...+..+...+.+.|+++
T Consensus 644 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 720 (899)
T TIGR02917 644 AYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAK--RTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYP 720 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHH
Confidence 5556677777777777776654 334566677777777777 77777777766643 34455666666666677777
Q ss_pred hHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 038429 106 QSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIG 181 (258)
Q Consensus 106 ~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 181 (258)
+|...|+.+ ... .|+..++..+..++.+.|++++|...++.+ +.+...++.+...|.+.|++++|.+.|+.+.
T Consensus 721 ~A~~~~~~~-~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 797 (899)
T TIGR02917 721 AAIQAYRKA-LKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVV 797 (899)
T ss_pred HHHHHHHHH-Hhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 777776666 332 234455555666666666666666655555 4445566666666666666666666665553
Q ss_pred C--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHH
Q 038429 182 K--K-DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEK 248 (258)
Q Consensus 182 ~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 248 (258)
+ | +...++.+...+...|+ .+|+.++++..... +-+..++..+...+.+.|++++|..+++++.+
T Consensus 798 ~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 865 (899)
T TIGR02917 798 KKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVN 865 (899)
T ss_pred HhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 2 2 33444444444444444 44444444443321 11222333444444444444444444444443
No 11
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.57 E-value=1.4e-13 Score=126.45 Aligned_cols=215 Identities=11% Similarity=-0.035 Sum_probs=137.8
Q ss_pred CcccccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC---CChhhHHHHHHHHhcCCChh
Q 038429 29 HPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ---PNLYTWNTLIRAYSSSDEPI 105 (258)
Q Consensus 29 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~ 105 (258)
.+...|++++|..+++.+.+.. +.+...|..+..++.+.| ++++|...|+.+.+ .+...+..+...+.+.|+++
T Consensus 576 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 652 (899)
T TIGR02917 576 YYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAG--DLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYA 652 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHH
Confidence 4455666666666666665543 445566666777777666 77777776665532 34555666666777777777
Q ss_pred hHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 038429 106 QSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIG 181 (258)
Q Consensus 106 ~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 181 (258)
+|...|+++ .+. .+.+..++..+...+...|++++|..+++.+ +.+...+..+...+.+.|++++|.+.|..+.
T Consensus 653 ~A~~~~~~~-~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 730 (899)
T TIGR02917 653 KAITSLKRA-LEL-KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKAL 730 (899)
T ss_pred HHHHHHHHH-Hhc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 777777666 322 1233556666666666777777776666666 4455566666667777777777777776654
Q ss_pred C--CChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHc
Q 038429 182 K--KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249 (258)
Q Consensus 182 ~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 249 (258)
+ |+..++..+...+.+.|++++|...++++.+.. +.+...+..+...|.+.|++++|.++|+++.+.
T Consensus 731 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 799 (899)
T TIGR02917 731 KRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK 799 (899)
T ss_pred hhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence 3 444566666677777777777777777666542 335556667777777777777777777777654
No 12
>PF13041 PPR_2: PPR repeat family
Probab=99.55 E-value=8.7e-15 Score=85.33 Aligned_cols=50 Identities=22% Similarity=0.473 Sum_probs=48.6
Q ss_pred CChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcC
Q 038429 86 PNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAAR 136 (258)
Q Consensus 86 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~ 136 (258)
||+.+||++|++|++.|++++|+++|++| ++.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M-~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEM-KKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999 999999999999999999985
No 13
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.38 E-value=9.4e-12 Score=108.19 Aligned_cols=71 Identities=11% Similarity=0.096 Sum_probs=67.0
Q ss_pred CChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHcCCccccc
Q 038429 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLT 256 (258)
Q Consensus 183 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 256 (258)
|+..+|.++++.-..+|+++.|..++.+|++.|++.+.+.|..|+.+ .++..-+..+++-|...|+.|+.-
T Consensus 202 ~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~se 272 (1088)
T KOG4318|consen 202 PTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSE 272 (1088)
T ss_pred CChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcc
Confidence 79999999999999999999999999999999999999999999988 889999999999999999999863
No 14
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.38 E-value=1.6e-12 Score=104.42 Aligned_cols=214 Identities=13% Similarity=0.050 Sum_probs=102.8
Q ss_pred CcccccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC--CChhhHHHHHHHHhcCCChhh
Q 038429 29 HPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ--PNLYTWNTLIRAYSSSDEPIQ 106 (258)
Q Consensus 29 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~ 106 (258)
.+...++.+.|.+.++.+...+.. ++..+..++.. ...+ +.++|..+++...+ ++...+...+..+.+.+++++
T Consensus 53 La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~--~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 128 (280)
T PF13429_consen 53 LAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG--DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDE 128 (280)
T ss_dssp ---------------------------------------------------------------------H-HHHTT-HHH
T ss_pred cccccccccccccccccccccccc-ccccccccccc-cccc--cccccccccccccccccccchhhHHHHHHHHHhHHHH
Confidence 555677888999999988887644 67778888877 5777 88888888876643 566777888888999999999
Q ss_pred HHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 038429 107 SFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182 (258)
Q Consensus 107 a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 182 (258)
+..+++........+.+...|..+...+.+.|+.++|...++.. +.|....+.++..+...|+.+++.++++...+
T Consensus 129 ~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~ 208 (280)
T PF13429_consen 129 AEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLK 208 (280)
T ss_dssp HHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 99999987444445567777888888899999999999999888 44577888899999999999987777765543
Q ss_pred ---CChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHH
Q 038429 183 ---KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIE 247 (258)
Q Consensus 183 ---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 247 (258)
.|...+..+..+|...|+.++|..+|++..+.. +.|......+..++...|+.++|.++.++.-
T Consensus 209 ~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 209 AAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp H-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT----------------
T ss_pred HCcCHHHHHHHHHHHhcccccccccccccccccccc-ccccccccccccccccccccccccccccccc
Confidence 466778888899999999999999999977642 2366778888899999999999998887653
No 15
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.37 E-value=4.1e-11 Score=106.70 Aligned_cols=57 Identities=9% Similarity=-0.030 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHH
Q 038429 156 ISNSLIHFYAVCGDLAMAYCVFVMIGK--K-DVVSWNSMISGFVEGGFFEKAIELYREME 212 (258)
Q Consensus 156 ~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 212 (258)
.+..+...+.+.|++++|...+++..+ | +...+..+...+...|++++|...++++.
T Consensus 286 a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al 345 (656)
T PRK15174 286 IVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLA 345 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 333444444444444444444433321 2 22233333344444444444444444443
No 16
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.35 E-value=4.1e-11 Score=96.92 Aligned_cols=227 Identities=15% Similarity=0.142 Sum_probs=178.2
Q ss_pred ceeeecCCCccCcccccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCCCChhhHHHHHHH
Q 038429 18 TTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRA 97 (258)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~ 97 (258)
.++.+.+. .+++-...++|..++.+......+.+..+||.+|.+-+-.. +-+-..++..+-..||..|+|+++.+
T Consensus 208 et~s~mI~---Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~--~K~Lv~EMisqkm~Pnl~TfNalL~c 282 (625)
T KOG4422|consen 208 ETVSIMIA---GLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV--GKKLVAEMISQKMTPNLFTFNALLSC 282 (625)
T ss_pred hhHHHHHH---HHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc--cHHHHHHHHHhhcCCchHhHHHHHHH
Confidence 34444444 66777888999999999888888999999999998776655 43333333333235999999999999
Q ss_pred HhcCCChhh----HHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcch-hhhhhhcc-------------cCchhHHHH
Q 038429 98 YSSSDEPIQ----SFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRV-GQAIHGMF-------------EDDLVISNS 159 (258)
Q Consensus 98 ~~~~g~~~~----a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~-a~~~~~~~-------------~~~~~~~~~ 159 (258)
.++.|+++. |++++.+| ++-|+.|+..+|..+|.-+++.++..+ +..+...+ +.|..-+..
T Consensus 283 ~akfg~F~~ar~aalqil~Em-KeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~ 361 (625)
T KOG4422|consen 283 AAKFGKFEDARKAALQILGEM-KEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQS 361 (625)
T ss_pred HHHhcchHHHHHHHHHHHHHH-HHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHH
Confidence 999997764 47788999 999999999999999999999998755 33333333 445567788
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC--------CCh---hhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 038429 160 LIHFYAVCGDLAMAYCVFVMIGK--------KDV---VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLS 228 (258)
Q Consensus 160 li~~~~~~g~~~~a~~~~~~m~~--------~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~ 228 (258)
.|..|.+..+.+-|.++-.-... |+. .=|..+....|.....+.-+..|+.|.-.-+-|+..+...+++
T Consensus 362 AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lr 441 (625)
T KOG4422|consen 362 AMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLR 441 (625)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHH
Confidence 88999999999999888765542 222 2355777788888889999999999988878899999999999
Q ss_pred HHhccCChhHHHHHHHHHHHcC
Q 038429 229 ACAKKRDLEFGIWVSSHIEKNG 250 (258)
Q Consensus 229 ~~~~~g~~~~a~~~~~~m~~~g 250 (258)
+..-.|.++-.-+++..++..|
T Consensus 442 A~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 442 ALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred HHhhcCcchhHHHHHHHHHHhh
Confidence 9999999999999999888777
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.29 E-value=4.6e-10 Score=99.83 Aligned_cols=157 Identities=10% Similarity=-0.054 Sum_probs=71.2
Q ss_pred hhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHH
Q 038429 88 LYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHF 163 (258)
Q Consensus 88 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~ 163 (258)
...|..+...+...|++++|+..|++. .+.. +.+...+..+..++.+.|++++|...++.. +.+...|+.+...
T Consensus 399 ~~~~~~lg~~~~~~g~~~~A~~~~~ka-l~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~ 476 (615)
T TIGR00990 399 PDIYYHRAQLHFIKGEFAQAGKDYQKS-IDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGEL 476 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH-HHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 334444444444444444444444444 2111 112233334444444444555554444443 2333445555555
Q ss_pred HHhcCCHHHHHHHHHhcCC--CCh-h-------hHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHhc
Q 038429 164 YAVCGDLAMAYCVFVMIGK--KDV-V-------SWNSMISGFVEGGFFEKAIELYREMEVENVKPDE-VTMVVVLSACAK 232 (258)
Q Consensus 164 ~~~~g~~~~a~~~~~~m~~--~~~-~-------~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~t~~~li~~~~~ 232 (258)
+...|++++|.+.|+...+ |+. . .++.....+...|++++|..++++.... .|+. ..+..+...+.+
T Consensus 477 ~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~ 554 (615)
T TIGR00990 477 LLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII--DPECDIAVATMAQLLLQ 554 (615)
T ss_pred HHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHH
Confidence 5555555555555544322 110 0 1111111222235555555555554443 2332 345666666666
Q ss_pred cCChhHHHHHHHHHHH
Q 038429 233 KRDLEFGIWVSSHIEK 248 (258)
Q Consensus 233 ~g~~~~a~~~~~~m~~ 248 (258)
.|++++|...|++..+
T Consensus 555 ~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 555 QGDVDEALKLFERAAE 570 (615)
T ss_pred ccCHHHHHHHHHHHHH
Confidence 6777777666666543
No 18
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.27 E-value=4.1e-10 Score=100.42 Aligned_cols=213 Identities=11% Similarity=0.037 Sum_probs=109.8
Q ss_pred cccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC---CChhhHHHHHHHHhcCCChhhHH
Q 038429 32 FLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ---PNLYTWNTLIRAYSSSDEPIQSF 108 (258)
Q Consensus 32 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~ 108 (258)
..|+++.|...++.+.... +.+...+..+...+...| +.++|...+++..+ .+...+..+...+.+.|++++|.
T Consensus 88 ~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g--~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~ 164 (656)
T PRK15174 88 ASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSK--QYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAI 164 (656)
T ss_pred hcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHH
Confidence 3555555555555555443 223344444444555555 55555555544332 23334444444455555555554
Q ss_pred HHHHHhH--------------------------------hcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc----cC
Q 038429 109 MIFLQLV--------------------------------YNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF----ED 152 (258)
Q Consensus 109 ~~~~~m~--------------------------------~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~ 152 (258)
..++.+. .+....++...+..+..++.+.|++++|...++.. +.
T Consensus 165 ~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~ 244 (656)
T PRK15174 165 SLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD 244 (656)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 4444431 22111122222333344445555555555555554 33
Q ss_pred chhHHHHHHHHHHhcCCHHH----HHHHHHhcCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC-hhhHH
Q 038429 153 DLVISNSLIHFYAVCGDLAM----AYCVFVMIGK--K-DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPD-EVTMV 224 (258)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~----a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~t~~ 224 (258)
+...+..+-..|.+.|++++ |...|+...+ | +...+..+...+...|++++|...+++..+. .|+ ...+.
T Consensus 245 ~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~ 322 (656)
T PRK15174 245 GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRA 322 (656)
T ss_pred CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHH
Confidence 44455556666666666654 5555555433 3 4446666666666677777777776666553 343 33455
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHc
Q 038429 225 VVLSACAKKRDLEFGIWVSSHIEKN 249 (258)
Q Consensus 225 ~li~~~~~~g~~~~a~~~~~~m~~~ 249 (258)
.+...+.+.|++++|...++.+.+.
T Consensus 323 ~La~~l~~~G~~~eA~~~l~~al~~ 347 (656)
T PRK15174 323 MYARALRQVGQYTAASDEFVQLARE 347 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 5666666777777777777666543
No 19
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.25 E-value=9.9e-10 Score=84.94 Aligned_cols=192 Identities=10% Similarity=-0.028 Sum_probs=153.6
Q ss_pred cchhhhhhhhhhhhccCCCChHHHHHHhccCCC---CChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHH
Q 038429 53 FDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ---PNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPF 129 (258)
Q Consensus 53 ~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ 129 (258)
.....+..+...+...| ++++|...+++..+ .+...+..+...+...|++++|...+++. .+.. +.+...+..
T Consensus 29 ~~~~~~~~la~~~~~~~--~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a-l~~~-~~~~~~~~~ 104 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQG--DLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRA-LTLN-PNNGDVLNN 104 (234)
T ss_pred cHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH-HhhC-CCCHHHHHH
Confidence 34566777888888888 99999999887643 35677888889999999999999999888 4332 334556778
Q ss_pred HHHHhcCcCCcchhhhhhhcc------cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHcCCC
Q 038429 130 VIKAAARPVQFRVGQAIHGMF------EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK--K-DVVSWNSMISGFVEGGF 200 (258)
Q Consensus 130 ll~~~~~~~~~~~a~~~~~~~------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~ 200 (258)
+...+...|++++|...++.. +.....+..+...+.+.|++++|.+.|....+ | +...+..+...+...|+
T Consensus 105 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 184 (234)
T TIGR02521 105 YGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQ 184 (234)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCC
Confidence 888888999999999988887 12345677788899999999999999987754 3 45678888899999999
Q ss_pred hHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHc
Q 038429 201 FEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249 (258)
Q Consensus 201 ~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 249 (258)
+++|...+++.... .+.+...+..+...+...|+.+.|..+.+.+.+.
T Consensus 185 ~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 185 YKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999999998876 3445667778888888999999999998877643
No 20
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.23 E-value=1.6e-11 Score=98.58 Aligned_cols=216 Identities=13% Similarity=0.031 Sum_probs=97.8
Q ss_pred ccCcccccchhhHHHHHHHHHhhc-cCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC---CChhhHHHHHHHHhcCC
Q 038429 27 QRHPHFLTNQKQLKRIHAQMLSTD-FFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ---PNLYTWNTLIRAYSSSD 102 (258)
Q Consensus 27 ~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g 102 (258)
...+-..|+++.|.+++....... ...++..|..+...+...+ +.+.|...++++.. .+...+..++.. ...+
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~--~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLG--DYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccccccc-cccc
Confidence 346778899999999997655444 2445556666666666777 99999999998875 345567777777 7899
Q ss_pred ChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc------cCchhHHHHHHHHHHhcCCHHHHHHH
Q 038429 103 EPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF------EDDLVISNSLIHFYAVCGDLAMAYCV 176 (258)
Q Consensus 103 ~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~------~~~~~~~~~li~~~~~~g~~~~a~~~ 176 (258)
++++|..++... -+. .++...+..++..+.+.++++.+..+++.. +.+...|..+...+.+.|+.++|.+.
T Consensus 92 ~~~~A~~~~~~~-~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 92 DPEEALKLAEKA-YER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccc-ccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999998776 333 256677888888999999999999998886 45777888999999999999999999
Q ss_pred HHhcCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHc
Q 038429 177 FVMIGK--K-DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249 (258)
Q Consensus 177 ~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 249 (258)
+++..+ | |....+.++..+...|+.+++.++++...+.. +.|...+..+..++...|+.++|...+++..+.
T Consensus 169 ~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~ 243 (280)
T PF13429_consen 169 YRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL 243 (280)
T ss_dssp HHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccc
Confidence 998764 6 57788999999999999999999998887764 456677889999999999999999999998764
No 21
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.22 E-value=7.6e-10 Score=89.70 Aligned_cols=217 Identities=17% Similarity=0.124 Sum_probs=157.2
Q ss_pred CcccccchhhHHHHHHHHHhhccCcchhhhhhhhhhhh--ccC-----------------------CCChHHHHHHhccC
Q 038429 29 HPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCA--LST-----------------------FSSLEYARKMFDQI 83 (258)
Q Consensus 29 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~--~~~-----------------------~~~~~~a~~~~~~m 83 (258)
...+.|.++.+--+++.|.+.|...+..+--.|.+.-+ ... |.+-+-|. ++-+.
T Consensus 124 kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAd-L~~E~ 202 (625)
T KOG4422|consen 124 KMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVAD-LLFET 202 (625)
T ss_pred HHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHH-HHHhh
Confidence 56678899999999999999999888877555544322 222 11111222 22222
Q ss_pred CCCChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcc-hhhhhhhcccCchhHHHHHHH
Q 038429 84 PQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFR-VGQAIHGMFEDDLVISNSLIH 162 (258)
Q Consensus 84 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~~~~~~~~~li~ 162 (258)
...+..+|..||.++|+-.+.+.|.+++++- .....+.+..+||.+|.+-....+-+ .++.+-..|.||..|+|+++.
T Consensus 203 ~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~-~~~k~kv~~~aFN~lI~~~S~~~~K~Lv~EMisqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 203 LPKTDETVSIMIAGLCKFSSLERARELYKEH-RAAKGKVYREAFNGLIGASSYSVGKKLVAEMISQKMTPNLFTFNALLS 281 (625)
T ss_pred cCCCchhHHHHHHHHHHHHhHHHHHHHHHHH-HHhhheeeHHhhhhhhhHHHhhccHHHHHHHHHhhcCCchHhHHHHHH
Confidence 2356788999999999999999999999999 77778899999999998765543322 233334444999999999999
Q ss_pred HHHhcCCHHHHHH----HHHhcC----CCChhhHHHHHHHHHcCCChHH-HHHHHHHHHH----cCCCC----ChhhHHH
Q 038429 163 FYAVCGDLAMAYC----VFVMIG----KKDVVSWNSMISGFVEGGFFEK-AIELYREMEV----ENVKP----DEVTMVV 225 (258)
Q Consensus 163 ~~~~~g~~~~a~~----~~~~m~----~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~----~~~~p----~~~t~~~ 225 (258)
+..+.|+++.|.+ ++.+|+ +|...+|..+|..+++-++..+ |..++.+... ..++| |..-|..
T Consensus 282 c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~ 361 (625)
T KOG4422|consen 282 CAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQS 361 (625)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHH
Confidence 9999998877654 556665 4899999999999998887644 4444444433 22333 3455788
Q ss_pred HHHHHhccCChhHHHHHHHHHH
Q 038429 226 VLSACAKKRDLEFGIWVSSHIE 247 (258)
Q Consensus 226 li~~~~~~g~~~~a~~~~~~m~ 247 (258)
.+..|.+..+.+.|.++..-+.
T Consensus 362 AM~Ic~~l~d~~LA~~v~~ll~ 383 (625)
T KOG4422|consen 362 AMSICSSLRDLELAYQVHGLLK 383 (625)
T ss_pred HHHHHHHhhhHHHHHHHHHHHH
Confidence 8889999999999999887664
No 22
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.22 E-value=2.5e-09 Score=90.00 Aligned_cols=212 Identities=9% Similarity=-0.007 Sum_probs=140.8
Q ss_pred CcccccchhhHHHHHHHHHhhccCcchhhhh--hhhhhhhccCCCChHHHHHHhccCCC---CChhhHHHHHHHHhcCCC
Q 038429 29 HPHFLTNQKQLKRIHAQMLSTDFFFDPYSAS--KLFTPCALSTFSSLEYARKMFDQIPQ---PNLYTWNTLIRAYSSSDE 103 (258)
Q Consensus 29 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~--~li~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~ 103 (258)
...+.|+.+.+.+.+..+.+. .|+...+. .....+...| +.+.|...+++..+ .+......+...|.+.|+
T Consensus 127 aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g--~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gd 202 (398)
T PRK10747 127 AAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARN--ENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGA 202 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh
Confidence 447788999999999998764 44443332 3356777788 99999999887754 466778889999999999
Q ss_pred hhhHHHHHHHhHhcCCCCCCc-------chHHHHHHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhcCCHHH
Q 038429 104 PIQSFMIFLQLVYNSPYFPNE-------FTLPFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAM 172 (258)
Q Consensus 104 ~~~a~~~~~~m~~~~~~~p~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~ 172 (258)
+++|..++..+ .+.+..++. .+|..++.......+.+...++++.+ +.+......+...+...|+.++
T Consensus 203 w~~a~~~l~~l-~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~ 281 (398)
T PRK10747 203 WSSLLDILPSM-AKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDT 281 (398)
T ss_pred HHHHHHHHHHH-HHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHH
Confidence 99999999998 544333211 12222232222223333333333333 2244444444445555555555
Q ss_pred HHHH-------------------------------HHhcCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC
Q 038429 173 AYCV-------------------------------FVMIGK--K-DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKP 218 (258)
Q Consensus 173 a~~~-------------------------------~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 218 (258)
|.++ .+...+ | |...+-++-..+.+.+++++|.+.|+...+. .|
T Consensus 282 A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P 359 (398)
T PRK10747 282 AQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RP 359 (398)
T ss_pred HHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CC
Confidence 4444 443322 3 4455667778888888899999999888764 58
Q ss_pred ChhhHHHHHHHHhccCChhHHHHHHHHHH
Q 038429 219 DEVTMVVVLSACAKKRDLEFGIWVSSHIE 247 (258)
Q Consensus 219 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 247 (258)
+..+|..+-..+.+.|+.++|.+++++-.
T Consensus 360 ~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 360 DAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88888888888889999999988888654
No 23
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.19 E-value=3.1e-09 Score=94.54 Aligned_cols=213 Identities=11% Similarity=-0.072 Sum_probs=167.5
Q ss_pred ccchhhHHHHHHHHHhhc-cCc-chhhhhhhhhhhhccCCCChHHHHHHhccCCC--C-ChhhHHHHHHHHhcCCChhhH
Q 038429 33 LTNQKQLKRIHAQMLSTD-FFF-DPYSASKLFTPCALSTFSSLEYARKMFDQIPQ--P-NLYTWNTLIRAYSSSDEPIQS 107 (258)
Q Consensus 33 ~~~~~~a~~~~~~m~~~~-~~~-~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a 107 (258)
.+.+++|...|+.....+ ..| ....++.+...+...| ++++|...|++..+ | +..+|..+...+...|++++|
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g--~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA 384 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKG--KHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKA 384 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 357889999999988765 223 3456778888888889 99999999997754 3 456888999999999999999
Q ss_pred HHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-
Q 038429 108 FMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK- 182 (258)
Q Consensus 108 ~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~- 182 (258)
+..|+.. .+.. +.+..+|..+...+...|++++|...++.. +.+...+..+...+.+.|++++|...|+...+
T Consensus 385 ~~~~~~a-l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 462 (615)
T TIGR00990 385 EEDFDKA-LKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN 462 (615)
T ss_pred HHHHHHH-HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999988 3332 334678889999999999999999999988 55677888899999999999999999998754
Q ss_pred -C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChh------hHHHHHHHHhccCChhHHHHHHHHHHHc
Q 038429 183 -K-DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEV------TMVVVLSACAKKRDLEFGIWVSSHIEKN 249 (258)
Q Consensus 183 -~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~------t~~~li~~~~~~g~~~~a~~~~~~m~~~ 249 (258)
| +...|+.+...+...|++++|+..|++.....-..+.. .++.....+...|++++|.+++++..+.
T Consensus 463 ~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l 537 (615)
T TIGR00990 463 FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII 537 (615)
T ss_pred CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 4 56789999999999999999999999987642111111 1222222334469999999999987654
No 24
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.17 E-value=3e-09 Score=97.90 Aligned_cols=208 Identities=7% Similarity=-0.072 Sum_probs=163.1
Q ss_pred cchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC--CChhhHHHHHHHHhcCCChhhHHHHH
Q 038429 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ--PNLYTWNTLIRAYSSSDEPIQSFMIF 111 (258)
Q Consensus 34 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~a~~~~ 111 (258)
+...+|...+....... |+......+...+...| ++++|...|+++.. ++...+..+...+.+.|+.++|...|
T Consensus 490 ~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~G--r~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l 565 (987)
T PRK09782 490 TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVE--DYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWL 565 (987)
T ss_pred CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCC--CHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHH
Confidence 67777888777776554 55443333444445788 99999999987653 45556777888899999999999999
Q ss_pred HHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc---cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-Ch
Q 038429 112 LQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF---EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK--K-DV 185 (258)
Q Consensus 112 ~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~ 185 (258)
+.. .+.+ +++...+..+.....+.|++++|...++.. .|+...|..+...+.+.|+.++|...|....+ | +.
T Consensus 566 ~qA-L~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~ 643 (987)
T PRK09782 566 QQA-EQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNS 643 (987)
T ss_pred HHH-HhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 998 4443 222333334444555669999999999988 67888999999999999999999999998765 5 56
Q ss_pred hhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHhccCChhHHHHHHHHHHHc
Q 038429 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKP-DEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249 (258)
Q Consensus 186 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 249 (258)
..++.+-..+...|+.++|+..+++..+. .| +...+..+-.++...|++++|...+++..+.
T Consensus 644 ~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 644 NYQAALGYALWDSGDIAQSREMLERAHKG--LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 67888888999999999999999998774 45 4567889999999999999999999998754
No 25
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.16 E-value=5.6e-09 Score=99.03 Aligned_cols=221 Identities=13% Similarity=0.030 Sum_probs=152.3
Q ss_pred cccccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC--C-ChhhHHHHHHHHhcCCChhh
Q 038429 30 PHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ--P-NLYTWNTLIRAYSSSDEPIQ 106 (258)
Q Consensus 30 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~ 106 (258)
+...|++++|.+.+++.++.. +-++..+..+...|.+.| ++++|...+++..+ | +...+..+...+.+.++.++
T Consensus 471 ~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G--~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~ 547 (1157)
T PRK11447 471 LENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAG--QRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRA 547 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHH
Confidence 345788999999999988776 336677788888899988 99999998887632 2 33333333334444555555
Q ss_pred HHHHHHHhHhcC---------------------------------------CCCCCcchHHHHHHHhcCcCCcchhhhhh
Q 038429 107 SFMIFLQLVYNS---------------------------------------PYFPNEFTLPFVIKAAARPVQFRVGQAIH 147 (258)
Q Consensus 107 a~~~~~~m~~~~---------------------------------------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 147 (258)
|+..++.+ ... ..+.+...+..+...+.+.|++++|...+
T Consensus 548 Al~~l~~l-~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y 626 (1157)
T PRK11447 548 ALAHLNTL-PRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAY 626 (1157)
T ss_pred HHHHHHhC-CchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHH
Confidence 55554433 110 12344455667777778888888888888
Q ss_pred hcc----cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCC--CC
Q 038429 148 GMF----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK--K-DVVSWNSMISGFVEGGFFEKAIELYREMEVENV--KP 218 (258)
Q Consensus 148 ~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~p 218 (258)
+.. +.+...+..+...|...|+.++|.+.++...+ | +...+..+...+...|++++|.++++++....- .|
T Consensus 627 ~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~ 706 (1157)
T PRK11447 627 QRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPP 706 (1157)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCc
Confidence 877 55667888888888888888888888887654 3 445566677777888888888888888776421 12
Q ss_pred ---ChhhHHHHHHHHhccCChhHHHHHHHHHH-HcCCccc
Q 038429 219 ---DEVTMVVVLSACAKKRDLEFGIWVSSHIE-KNGIKMD 254 (258)
Q Consensus 219 ---~~~t~~~li~~~~~~g~~~~a~~~~~~m~-~~g~~p~ 254 (258)
+...+..+...+...|+.++|...++... ..|+.|+
T Consensus 707 ~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~~ 746 (1157)
T PRK11447 707 SMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITPT 746 (1157)
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCC
Confidence 22455666777888888888888888764 4455554
No 26
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.13 E-value=3.5e-09 Score=81.86 Aligned_cols=183 Identities=14% Similarity=-0.057 Sum_probs=149.0
Q ss_pred cCcccccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC---CChhhHHHHHHHHhcCCCh
Q 038429 28 RHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ---PNLYTWNTLIRAYSSSDEP 104 (258)
Q Consensus 28 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~ 104 (258)
..+...|++++|.+.+....+.. +.+...+..+...+...| ++++|...+++..+ .+...+..+...+...|++
T Consensus 39 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~ 115 (234)
T TIGR02521 39 LGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLG--ELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKY 115 (234)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccH
Confidence 46667899999999999998765 445677888889999999 99999999986653 4567788899999999999
Q ss_pred hhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 038429 105 IQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVFVMI 180 (258)
Q Consensus 105 ~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 180 (258)
++|...|++.......+.....+..+..++...|++++|...+... +.+...+..+...+...|++++|.+.+++.
T Consensus 116 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 195 (234)
T TIGR02521 116 EQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERY 195 (234)
T ss_pred HHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999998432222233456777888899999999999999888 445668889999999999999999999876
Q ss_pred CC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHH
Q 038429 181 GK---KDVVSWNSMISGFVEGGFFEKAIELYREMEV 213 (258)
Q Consensus 181 ~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 213 (258)
.+ .+...+..+...+...|+.++|..+++.+..
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 196 QQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 43 3556677788888899999999999887764
No 27
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.09 E-value=2.1e-09 Score=90.86 Aligned_cols=216 Identities=13% Similarity=0.046 Sum_probs=124.1
Q ss_pred CcccccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC--C-ChhhHHHHHHHHhcCCChh
Q 038429 29 HPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ--P-NLYTWNTLIRAYSSSDEPI 105 (258)
Q Consensus 29 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~ 105 (258)
-+...+.+++|...+....... +....++..+...|...| +++-|...+++..+ | -..+||.|..++-..|++.
T Consensus 261 V~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG--~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ 337 (966)
T KOG4626|consen 261 VYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQG--LLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVT 337 (966)
T ss_pred HHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccc--cHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchH
Confidence 3334444444444444433322 222334555555555555 66666666655433 2 2356677777777777777
Q ss_pred hHHHHHHHhHhcCCCCCC-cchHHHHHHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 038429 106 QSFMIFLQLVYNSPYFPN-EFTLPFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVFVMI 180 (258)
Q Consensus 106 ~a~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 180 (258)
+|.+.|+.... ..|+ ..+.+.|-+.+...|.++.|.++|... +.-...+|.|-..|...|++++|...+++.
T Consensus 338 ea~~cYnkaL~---l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykea 414 (966)
T KOG4626|consen 338 EAVDCYNKALR---LCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEA 414 (966)
T ss_pred HHHHHHHHHHH---hCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHH
Confidence 77777665522 1232 345666666677777777776666655 223345666777777777777777776665
Q ss_pred CC--CC-hhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHhccCChhHHHHHHHHHHHcCCccc
Q 038429 181 GK--KD-VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPD-EVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254 (258)
Q Consensus 181 ~~--~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 254 (258)
.+ |+ ...|+.+-..|-..|+.+.|..-+.+... +.|. ...++.|-..|-..|++.+|.+-+++..+ ++||
T Consensus 415 lrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPD 488 (966)
T KOG4626|consen 415 LRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPD 488 (966)
T ss_pred HhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCC
Confidence 43 32 23566666666666666666666655544 3443 34566677777777777777777766643 3454
No 28
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.08 E-value=2.3e-09 Score=90.70 Aligned_cols=211 Identities=12% Similarity=0.021 Sum_probs=138.2
Q ss_pred CcccccchhhHHHHHHHHHhhccCcc-hhhhhhhhhhhhccCCCChHHHHHHhccCCC--C-ChhhHHHHHHHHhcCCCh
Q 038429 29 HPHFLTNQKQLKRIHAQMLSTDFFFD-PYSASKLFTPCALSTFSSLEYARKMFDQIPQ--P-NLYTWNTLIRAYSSSDEP 104 (258)
Q Consensus 29 ~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~ 104 (258)
.+...|+...|.+-|.+.++.. |+ ...|-.|-..|...+ .++.|...+.+... | ...+|..|...|-..|++
T Consensus 227 ~f~~~Gei~~aiq~y~eAvkld--P~f~dAYiNLGnV~ke~~--~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~l 302 (966)
T KOG4626|consen 227 VFNAQGEIWLAIQHYEEAVKLD--PNFLDAYINLGNVYKEAR--IFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLL 302 (966)
T ss_pred HHhhcchHHHHHHHHHHhhcCC--CcchHHHhhHHHHHHHHh--cchHHHHHHHHHHhcCCcchhhccceEEEEeccccH
Confidence 4445566666666666665443 22 334555666666666 66666666554322 2 345566666666667777
Q ss_pred hhHHHHHHHhHhcCCCCCC-cchHHHHHHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 038429 105 IQSFMIFLQLVYNSPYFPN-EFTLPFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVFVM 179 (258)
Q Consensus 105 ~~a~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 179 (258)
+-|+..|++... +.|+ ..+|+.|.+++-..|++.+|...+... +......+.|-..|...|+++.|.++|..
T Consensus 303 dlAI~~Ykral~---~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~ 379 (966)
T KOG4626|consen 303 DLAIDTYKRALE---LQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLK 379 (966)
T ss_pred HHHHHHHHHHHh---cCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 777777766522 3344 456777777777777777777777766 44455677777777777777777777776
Q ss_pred cCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHhccCChhHHHHHHHHHHH
Q 038429 180 IGK--K-DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDE-VTMVVVLSACAKKRDLEFGIWVSSHIEK 248 (258)
Q Consensus 180 m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~t~~~li~~~~~~g~~~~a~~~~~~m~~ 248 (258)
... | -...+|.|-..|-..|+.++|+.-+++... |.|+. ..|+.+-+.|-..|+.+.|.+.+.+.+.
T Consensus 380 al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~ 450 (966)
T KOG4626|consen 380 ALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ 450 (966)
T ss_pred HHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh
Confidence 554 3 234677777778888888888887777654 66765 5677788888888888888777776653
No 29
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.06 E-value=5.2e-10 Score=97.65 Aligned_cols=87 Identities=13% Similarity=0.092 Sum_probs=72.6
Q ss_pred cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC----ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHH
Q 038429 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKK----DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVV 226 (258)
Q Consensus 151 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~l 226 (258)
.++..+|..+++.-.-.|+++.|..++.+|++. +.+-|-.||-+ .+....++.+.+-|.+.|+.|+..|+.-.
T Consensus 201 ~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~ady 277 (1088)
T KOG4318|consen 201 APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADY 277 (1088)
T ss_pred CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHH
Confidence 589999999999999999999999999999974 44444455544 88889999999999999999999999988
Q ss_pred HHHHhccCChhHHH
Q 038429 227 LSACAKKRDLEFGI 240 (258)
Q Consensus 227 i~~~~~~g~~~~a~ 240 (258)
+..+...|+...+.
T Consensus 278 vip~l~N~~t~~~~ 291 (1088)
T KOG4318|consen 278 VIPQLSNGQTKYGE 291 (1088)
T ss_pred HHhhhcchhhhhcc
Confidence 88888766654443
No 30
>PF12854 PPR_1: PPR repeat
Probab=99.06 E-value=1.7e-10 Score=60.82 Aligned_cols=34 Identities=15% Similarity=0.241 Sum_probs=27.6
Q ss_pred cCCCCChhhHHHHHHHHhccCChhHHHHHHHHHH
Q 038429 214 ENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIE 247 (258)
Q Consensus 214 ~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 247 (258)
.|+.||..||++||.+||+.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3678888888888888888888888888888773
No 31
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.06 E-value=1.9e-08 Score=85.11 Aligned_cols=216 Identities=10% Similarity=-0.033 Sum_probs=130.8
Q ss_pred cCcccccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC---CChhhHHHHHHHHhcCCCh
Q 038429 28 RHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ---PNLYTWNTLIRAYSSSDEP 104 (258)
Q Consensus 28 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~ 104 (258)
....+.|+.+.+.+.+....+..-.+.....-.....+...| +++.|...++.+.+ .+...+..+...+.+.|++
T Consensus 126 ~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~--~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~ 203 (409)
T TIGR00540 126 EAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQN--ELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAW 203 (409)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhH
Confidence 356677899999999988876542222233333466677788 99999999888764 3666788899999999999
Q ss_pred hhHHHHHHHhHhcCCCCCCcch-------HHHHHHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhcCCHHHH
Q 038429 105 IQSFMIFLQLVYNSPYFPNEFT-------LPFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMA 173 (258)
Q Consensus 105 ~~a~~~~~~m~~~~~~~p~~~~-------~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a 173 (258)
++|.+.+... .+.++.++... +..++..-......+.....++.. +.+...+..+...+...|+.++|
T Consensus 204 ~~a~~~l~~l-~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A 282 (409)
T TIGR00540 204 QALDDIIDNM-AKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSA 282 (409)
T ss_pred HHHHHHHHHH-HHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHH
Confidence 9999999988 66554322211 111111111111122233333333 13666777777777777777777
Q ss_pred HHHHHhcCC--------------------------------------C-Ch--hhHHHHHHHHHcCCChHHHHHHHHHHH
Q 038429 174 YCVFVMIGK--------------------------------------K-DV--VSWNSMISGFVEGGFFEKAIELYREME 212 (258)
Q Consensus 174 ~~~~~~m~~--------------------------------------~-~~--~~~~~li~~~~~~g~~~~a~~~~~~m~ 212 (258)
.+++++..+ | |. ....++-..+.+.|++++|.+.|+...
T Consensus 283 ~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~ 362 (409)
T TIGR00540 283 QEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVA 362 (409)
T ss_pred HHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhH
Confidence 777665532 2 22 223344555556666666666666433
Q ss_pred HcCCCCChhhHHHHHHHHhccCChhHHHHHHHHH
Q 038429 213 VENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246 (258)
Q Consensus 213 ~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m 246 (258)
.....||...+.++...+.+.|+.++|.+++++-
T Consensus 363 a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 363 ACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3334566666666666666666666666666653
No 32
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.05 E-value=5.9e-08 Score=78.11 Aligned_cols=223 Identities=12% Similarity=-0.029 Sum_probs=176.6
Q ss_pred cCcccccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccC---CCCChhhHHHHHHHHhcCCCh
Q 038429 28 RHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQI---PQPNLYTWNTLIRAYSSSDEP 104 (258)
Q Consensus 28 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m---~~~~~~~~~~li~~~~~~g~~ 104 (258)
.+....|+.+.+-+...+..+..-.++..++-+........| +.+.|..-+++. ...+...-.....+|.+.|++
T Consensus 126 ~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~--d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~ 203 (400)
T COG3071 126 EAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRR--DYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAW 203 (400)
T ss_pred HHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCC--CchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccH
Confidence 356667777888877777776644666666666777777777 777776666544 346778889999999999999
Q ss_pred hhHHHHHHHhHhcCCCCCCc-------chHHHHHHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhcCCHHHH
Q 038429 105 IQSFMIFLQLVYNSPYFPNE-------FTLPFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMA 173 (258)
Q Consensus 105 ~~a~~~~~~m~~~~~~~p~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a 173 (258)
.....++..| .+.|.--++ .+|..++.-....+..+.-...|+.. ..++..-.+++.-+.++|+.++|
T Consensus 204 ~~ll~~l~~L-~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A 282 (400)
T COG3071 204 QALLAILPKL-RKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEA 282 (400)
T ss_pred HHHHHHHHHH-HHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHH
Confidence 9999999999 777776554 36888888888888877777778777 56677788889999999999999
Q ss_pred HHHHHhcCC---------------------------------C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC
Q 038429 174 YCVFVMIGK---------------------------------K-DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPD 219 (258)
Q Consensus 174 ~~~~~~m~~---------------------------------~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 219 (258)
.++..+..+ | +...+.+|-..|.+.+.|.+|...|+...+ .+|+
T Consensus 283 ~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s 360 (400)
T COG3071 283 QEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPS 360 (400)
T ss_pred HHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCC
Confidence 998765431 2 556777888899999999999999996555 5799
Q ss_pred hhhHHHHHHHHhccCChhHHHHHHHHHHHcCCcccc
Q 038429 220 EVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255 (258)
Q Consensus 220 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 255 (258)
..+|+.+-.++.+.|+.++|.++.++....-.+|+.
T Consensus 361 ~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~~ 396 (400)
T COG3071 361 ASDYAELADALDQLGEPEEAEQVRREALLLTRQPNL 396 (400)
T ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCC
Confidence 999999999999999999999999987655555543
No 33
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.03 E-value=5.4e-09 Score=88.86 Aligned_cols=220 Identities=11% Similarity=0.021 Sum_probs=167.4
Q ss_pred CccCcccccchhhHHHHHHHHHhh-----cc-Ccchh-hhhhhhhhhhccCCCChHHHHHHhccCCC-----------CC
Q 038429 26 HQRHPHFLTNQKQLKRIHAQMLST-----DF-FFDPY-SASKLFTPCALSTFSSLEYARKMFDQIPQ-----------PN 87 (258)
Q Consensus 26 ~~~~~~~~~~~~~a~~~~~~m~~~-----~~-~~~~~-~~~~li~~~~~~~~~~~~~a~~~~~~m~~-----------~~ 87 (258)
+...|...|+++.|..++.+.++. |. .|... ..+.+-..|...+ ++.+|..+|+++.. .-
T Consensus 205 La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~--k~~eAv~ly~~AL~i~e~~~G~~h~~v 282 (508)
T KOG1840|consen 205 LAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLG--KYDEAVNLYEEALTIREEVFGEDHPAV 282 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 445888899999999999998876 31 22333 2345677788888 99999998887642 23
Q ss_pred hhhHHHHHHHHhcCCChhhHHHHHHHhH----hcCCCC-CCc-chHHHHHHHhcCcCCcchhhhhhhcc-----------
Q 038429 88 LYTWNTLIRAYSSSDEPIQSFMIFLQLV----YNSPYF-PNE-FTLPFVIKAAARPVQFRVGQAIHGMF----------- 150 (258)
Q Consensus 88 ~~~~~~li~~~~~~g~~~~a~~~~~~m~----~~~~~~-p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~----------- 150 (258)
..+++.|-..|.+.|++++|...++... +..+.. |.+ ..++.+...++..+++++|..+++..
T Consensus 283 a~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~ 362 (508)
T KOG1840|consen 283 AATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGED 362 (508)
T ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcccc
Confidence 4568888889999999999988887642 112222 222 23677888899999999998888776
Q ss_pred c-CchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----------ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcC--C
Q 038429 151 E-DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKK-----------DVVSWNSMISGFVEGGFFEKAIELYREMEVEN--V 216 (258)
Q Consensus 151 ~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~ 216 (258)
. .-..+++.|-..|...|++++|.++|+...+. ....++.|-..|.+.++..+|.++|.+-.... +
T Consensus 363 ~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~ 442 (508)
T KOG1840|consen 363 NVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLC 442 (508)
T ss_pred chHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHh
Confidence 2 22458999999999999999999999877531 24578889999999999999999998754321 2
Q ss_pred CC---C-hhhHHHHHHHHhccCChhHHHHHHHHHH
Q 038429 217 KP---D-EVTMVVVLSACAKKRDLEFGIWVSSHIE 247 (258)
Q Consensus 217 ~p---~-~~t~~~li~~~~~~g~~~~a~~~~~~m~ 247 (258)
.| + ..+|..|...|.+.|+++.|.++.+.+.
T Consensus 443 g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 443 GPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred CCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 33 3 3579999999999999999999999775
No 34
>PRK12370 invasion protein regulator; Provisional
Probab=99.00 E-value=6.1e-08 Score=85.12 Aligned_cols=209 Identities=9% Similarity=-0.077 Sum_probs=147.9
Q ss_pred ccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhcc---C----CCChHHHHHHhccCCC---CChhhHHHHHHHHhcCC
Q 038429 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALS---T----FSSLEYARKMFDQIPQ---PNLYTWNTLIRAYSSSD 102 (258)
Q Consensus 33 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~---~----~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g 102 (258)
.+++++|.+++++.++.. +-+...|..+..++... | .+++++|...+++..+ .+..+|..+...+...|
T Consensus 274 ~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 274 PYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Confidence 356778888998888664 22344555554433311 1 1257889888887654 46778888888899999
Q ss_pred ChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc---cCc-hhHHHHHHHHHHhcCCHHHHHHHHH
Q 038429 103 EPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF---EDD-LVISNSLIHFYAVCGDLAMAYCVFV 178 (258)
Q Consensus 103 ~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~---~~~-~~~~~~li~~~~~~g~~~~a~~~~~ 178 (258)
++++|...|++. .+.+ +.+...+..+..++...|++++|...++.. .|+ ...+..+...+...|++++|...++
T Consensus 353 ~~~~A~~~~~~A-l~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQA-NLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHH-HHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 999999999998 4432 334567888888999999999999999998 444 3344445556777899999999998
Q ss_pred hcCC---C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhh-HHHHHHHHhccCChhHHHHHHHHHHH
Q 038429 179 MIGK---K-DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVT-MVVVLSACAKKRDLEFGIWVSSHIEK 248 (258)
Q Consensus 179 ~m~~---~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t-~~~li~~~~~~g~~~~a~~~~~~m~~ 248 (258)
+..+ | +...+..+-..+...|+.++|...++++... .|+..+ .+.+...+...| +.|...++.+.+
T Consensus 431 ~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 431 ELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 7642 4 3445677778888999999999999887554 355444 455555667777 477777776643
No 35
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.00 E-value=6.1e-08 Score=92.09 Aligned_cols=212 Identities=9% Similarity=0.012 Sum_probs=143.8
Q ss_pred CcccccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC--CCh---hhHHH----------
Q 038429 29 HPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ--PNL---YTWNT---------- 93 (258)
Q Consensus 29 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~--~~~---~~~~~---------- 93 (258)
.+...|++++|...++..++.. +.+...+..+..++.+.| ++++|...|++..+ |+. ..|..
T Consensus 278 ~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g--~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 278 AAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQG--DRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 3445688899999999888765 346778888888888888 99999998887653 321 12222
Q ss_pred --HHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhc
Q 038429 94 --LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVC 167 (258)
Q Consensus 94 --li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~ 167 (258)
....+.+.|++++|+..|++. .+.. +.+...+..+...+...|++++|+..++.. +.+...+..+...|. .
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~A-l~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~ 431 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQA-RQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-Q 431 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHH-HHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-h
Confidence 234567888999999999888 4332 234556777888888899999999988887 344455666666553 3
Q ss_pred CCHHHHHHHHHhcCCCC------------hhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHhccC
Q 038429 168 GDLAMAYCVFVMIGKKD------------VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPD-EVTMVVVLSACAKKR 234 (258)
Q Consensus 168 g~~~~a~~~~~~m~~~~------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~t~~~li~~~~~~g 234 (258)
++.++|...++.+.... ...+..+...+...|++++|++.|++..+. .|+ ...+..+...|.+.|
T Consensus 432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G 509 (1157)
T PRK11447 432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAG 509 (1157)
T ss_pred cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC
Confidence 46677776666544211 122344555666777777777777776654 343 345566677777777
Q ss_pred ChhHHHHHHHHHHH
Q 038429 235 DLEFGIWVSSHIEK 248 (258)
Q Consensus 235 ~~~~a~~~~~~m~~ 248 (258)
++++|...++++.+
T Consensus 510 ~~~~A~~~l~~al~ 523 (1157)
T PRK11447 510 QRSQADALMRRLAQ 523 (1157)
T ss_pred CHHHHHHHHHHHHH
Confidence 77777777777654
No 36
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.00 E-value=1.1e-08 Score=87.02 Aligned_cols=217 Identities=13% Similarity=0.025 Sum_probs=130.3
Q ss_pred cCCCccCcccccchhhHHHHHHHHHhhcc---------------------------------CcchhhhhhhhhhhhccC
Q 038429 23 NNGHQRHPHFLTNQKQLKRIHAQMLSTDF---------------------------------FFDPYSASKLFTPCALST 69 (258)
Q Consensus 23 ~~~~~~~~~~~~~~~~a~~~~~~m~~~~~---------------------------------~~~~~~~~~li~~~~~~~ 69 (258)
+..+.+++-..++.+.++++|+.+.+... +-++.+|-.+-++|+-.+
T Consensus 356 l~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQk 435 (638)
T KOG1126|consen 356 LSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQK 435 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhh
Confidence 33444566677888889999888876411 233445555555555555
Q ss_pred CCChHHHHHHhccCCC---CChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHH---HHHHhcCcCCcchh
Q 038429 70 FSSLEYARKMFDQIPQ---PNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPF---VIKAAARPVQFRVG 143 (258)
Q Consensus 70 ~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~---ll~~~~~~~~~~~a 143 (258)
+.+.|.+.|++..+ ...++|+.+-.-+.....+|.|...|+.. +..|+..|++ +--.|.+.++++.|
T Consensus 436 --dh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~A-----l~~~~rhYnAwYGlG~vy~Kqek~e~A 508 (638)
T KOG1126|consen 436 --DHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKA-----LGVDPRHYNAWYGLGTVYLKQEKLEFA 508 (638)
T ss_pred --HHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhh-----hcCCchhhHHHHhhhhheeccchhhHH
Confidence 55555555555443 23455555555555555555555555544 3344444443 33456666666666
Q ss_pred hhhhhcc----cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCC
Q 038429 144 QAIHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK---KDVVSWNSMISGFVEGGFFEKAIELYREMEVENV 216 (258)
Q Consensus 144 ~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 216 (258)
+--|+.. +.+.+.-..+...+-+.|+.|+|++++++... .|+..--.....+...++.++|+..++++++ +
T Consensus 509 e~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~--~ 586 (638)
T KOG1126|consen 509 EFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKE--L 586 (638)
T ss_pred HHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHH--h
Confidence 6666666 55556666666667777777777777765432 2444433344455566777777777777776 4
Q ss_pred CCChh-hHHHHHHHHhccCChhHHHHHHHHHHH
Q 038429 217 KPDEV-TMVVVLSACAKKRDLEFGIWVSSHIEK 248 (258)
Q Consensus 217 ~p~~~-t~~~li~~~~~~g~~~~a~~~~~~m~~ 248 (258)
.|+.. .|-.+.+.|.+.|+.+.|..-|.-+.+
T Consensus 587 vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 587 VPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred CcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 56554 466777778888888888776665543
No 37
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.98 E-value=1e-08 Score=87.13 Aligned_cols=208 Identities=11% Similarity=0.035 Sum_probs=162.3
Q ss_pred chhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC-----------------------------
Q 038429 35 NQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ----------------------------- 85 (258)
Q Consensus 35 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~----------------------------- 85 (258)
+.++|..+|.... ..+.-+.++...+-.+|...+ ++++|+++|+...+
T Consensus 334 ~~~~A~~~~~klp-~h~~nt~wvl~q~GrayFEl~--~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~La 410 (638)
T KOG1126|consen 334 NCREALNLFEKLP-SHHYNTGWVLSQLGRAYFELI--EYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLA 410 (638)
T ss_pred HHHHHHHHHHhhH-HhcCCchHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHH
Confidence 4556666676633 334556688888999999999 99999999986541
Q ss_pred --------CChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCC-CcchHHHHHHHhcCcCCcchhhhhhhcc-cCchh
Q 038429 86 --------PNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFP-NEFTLPFVIKAAARPVQFRVGQAIHGMF-EDDLV 155 (258)
Q Consensus 86 --------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~ 155 (258)
..+.+|.++-++|.-.++.+.|++.|++. .+ +.| ...+|+.+-+-+.....+|.|...|+.. ..|..
T Consensus 411 q~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RA-iQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r 487 (638)
T KOG1126|consen 411 QDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRA-IQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR 487 (638)
T ss_pred HHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHh-hc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch
Confidence 34678999999999999999999999987 32 334 5678888888889999999999999988 55555
Q ss_pred H---HHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 038429 156 I---SNSLIHFYAVCGDLAMAYCVFVMIGK--K-DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSA 229 (258)
Q Consensus 156 ~---~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~ 229 (258)
. |..|-..|.|.++++.|+-.|+...+ | +.+....+...+-+.|+.++|++++++.....- -|...--.-...
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~-kn~l~~~~~~~i 566 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP-KNPLCKYHRASI 566 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC-CCchhHHHHHHH
Confidence 4 55667889999999999999998875 4 666777777788889999999999999876542 244444444556
Q ss_pred HhccCChhHHHHHHHHHHHc
Q 038429 230 CAKKRDLEFGIWVSSHIEKN 249 (258)
Q Consensus 230 ~~~~g~~~~a~~~~~~m~~~ 249 (258)
+...++.++|.+.++++++.
T Consensus 567 l~~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 567 LFSLGRYVEALQELEELKEL 586 (638)
T ss_pred HHhhcchHHHHHHHHHHHHh
Confidence 66679999999999999764
No 38
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.95 E-value=5.6e-08 Score=89.67 Aligned_cols=210 Identities=7% Similarity=-0.118 Sum_probs=162.8
Q ss_pred CcccccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCCCChhh---HHHHHHHHhcCCChh
Q 038429 29 HPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYT---WNTLIRAYSSSDEPI 105 (258)
Q Consensus 29 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~li~~~~~~g~~~ 105 (258)
.+...|++++|...+..+... .|+...+..+..++.+.| +.++|...+++..+.+... +..+.....+.|+++
T Consensus 518 al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~G--d~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~ 593 (987)
T PRK09782 518 QAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAG--NGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPE 593 (987)
T ss_pred HHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCC--CHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHH
Confidence 445789999999999987554 344455666777788888 9999999998776533322 333334444569999
Q ss_pred hHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 038429 106 QSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIG 181 (258)
Q Consensus 106 ~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 181 (258)
+|+..|++. .+. .|+...+..+..++.+.|++++|...++.. +.+...++.+-..+...|+.++|...|+...
T Consensus 594 eAl~~~~~A-L~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL 670 (987)
T PRK09782 594 LALNDLTRS-LNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAH 670 (987)
T ss_pred HHHHHHHHH-HHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999988 433 367788999999999999999999999988 5667788899999999999999999999775
Q ss_pred C--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHhccCChhHHHHHHHHHH
Q 038429 182 K--K-DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDE-VTMVVVLSACAKKRDLEFGIWVSSHIE 247 (258)
Q Consensus 182 ~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~t~~~li~~~~~~g~~~~a~~~~~~m~ 247 (258)
+ | +...+..+-.++...|++++|+..+++..+. .|+. .+....-....+..+++.|.+-+...-
T Consensus 671 ~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l--~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~ 738 (987)
T PRK09782 671 KGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD--IDNQALITPLTPEQNQQRFNFRRLHEEVGRRW 738 (987)
T ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 4 5 6678899999999999999999999998864 4654 444455555666667777776666543
No 39
>PF12854 PPR_1: PPR repeat
Probab=98.94 E-value=1.5e-09 Score=57.17 Aligned_cols=31 Identities=32% Similarity=0.447 Sum_probs=19.2
Q ss_pred cCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 038429 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIG 181 (258)
Q Consensus 151 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 181 (258)
.||..|||+||++||+.|++++|.++|++|+
T Consensus 4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 4 EPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4566666666666666666666666666653
No 40
>PRK12370 invasion protein regulator; Provisional
Probab=98.94 E-value=1e-07 Score=83.68 Aligned_cols=208 Identities=9% Similarity=0.021 Sum_probs=150.5
Q ss_pred cccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC--C-ChhhHHHHHHHHhcCCChhhHH
Q 038429 32 FLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ--P-NLYTWNTLIRAYSSSDEPIQSF 108 (258)
Q Consensus 32 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~ 108 (258)
..++.++|...++..++.+ +-+...+..+-..+...| ++++|...|++..+ | +...|..+...+...|++++|+
T Consensus 316 ~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g--~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi 392 (553)
T PRK12370 316 KQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS--EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEAL 392 (553)
T ss_pred cchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 4456889999999998876 446778888888888889 99999999998654 3 4667888999999999999999
Q ss_pred HHHHHhHhcCCCCCCc-chHHHHHHHhcCcCCcchhhhhhhcc----cCc-hhHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 038429 109 MIFLQLVYNSPYFPNE-FTLPFVIKAAARPVQFRVGQAIHGMF----EDD-LVISNSLIHFYAVCGDLAMAYCVFVMIGK 182 (258)
Q Consensus 109 ~~~~~m~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 182 (258)
..+++. .+.+ |+. ..+..+...+...|++++|...++.. +|+ ...+..+-.+|...|+.++|...+.+...
T Consensus 393 ~~~~~A-l~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~ 469 (553)
T PRK12370 393 QTINEC-LKLD--PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIST 469 (553)
T ss_pred HHHHHH-HhcC--CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh
Confidence 999998 4332 332 23334444566678999999988776 343 44577788889999999999999988764
Q ss_pred --CC-hhhHHHHHHHHHcCCChHHHHHHHHHHHHc-CCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHcC
Q 038429 183 --KD-VVSWNSMISGFVEGGFFEKAIELYREMEVE-NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250 (258)
Q Consensus 183 --~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 250 (258)
|+ ....+.+-..|...| ++|...++.+.+. ...|....+..++.++ .|+-+.+... +++.+.|
T Consensus 470 ~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 470 QEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLVLVA--HGEAIAEKMW-NKFKNED 536 (553)
T ss_pred ccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHH--HhhhHHHHHH-HHhhccc
Confidence 33 334455555667777 5788878777654 3444444455555544 5666666555 7777655
No 41
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.89 E-value=2.3e-07 Score=84.59 Aligned_cols=145 Identities=6% Similarity=-0.096 Sum_probs=87.4
Q ss_pred ccCcccccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCC---CCChhhHHHHHHHHhcCCC
Q 038429 27 QRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIP---QPNLYTWNTLIRAYSSSDE 103 (258)
Q Consensus 27 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~g~ 103 (258)
.......|+.++|.+++....... ..+...+..+...+.+.| ++++|..++++.. ..+...+..+...+...|+
T Consensus 22 ~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g--~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~ 98 (765)
T PRK10049 22 LQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLK--QWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQ 98 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 335556677777777777666532 333445666777777777 7777777777632 2345556667777777777
Q ss_pred hhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhcCCHHHHHHHH
Q 038429 104 PIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVF 177 (258)
Q Consensus 104 ~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~ 177 (258)
+++|+..+++. .+. .+.+.. +..+..++...|+.++|...++.. +.+...+..+...+.+.|..++|.+.+
T Consensus 99 ~~eA~~~l~~~-l~~-~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l 173 (765)
T PRK10049 99 YDEALVKAKQL-VSG-APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAI 173 (765)
T ss_pred HHHHHHHHHHH-HHh-CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHH
Confidence 77777777776 322 122333 666666677777777777777666 333444455555555555544444333
No 42
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=2.9e-07 Score=75.70 Aligned_cols=159 Identities=13% Similarity=0.021 Sum_probs=134.8
Q ss_pred ChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc----cCchhHHHHHHH
Q 038429 87 NLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIH 162 (258)
Q Consensus 87 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~ 162 (258)
-+.|+..+.+-|+-.++.++|...|++. .+-+ +-...+|+.+-+-|....+...|..-++.. +.|-..|-.|-.
T Consensus 329 R~ETCCiIaNYYSlr~eHEKAv~YFkRA-LkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQ 406 (559)
T KOG1155|consen 329 RPETCCIIANYYSLRSEHEKAVMYFKRA-LKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQ 406 (559)
T ss_pred CccceeeehhHHHHHHhHHHHHHHHHHH-HhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhH
Confidence 4556677777888888999999999988 4332 223567899999999999999999998888 778889999999
Q ss_pred HHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHH
Q 038429 163 FYAVCGDLAMAYCVFVMIGK--K-DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239 (258)
Q Consensus 163 ~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a 239 (258)
+|.-.++..-|+-.|++..+ | |...|.+|-..|.+.++.++|+.-|.+....|- .+...+..|-+.+-+.++.++|
T Consensus 407 aYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-te~~~l~~LakLye~l~d~~eA 485 (559)
T KOG1155|consen 407 AYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-TEGSALVRLAKLYEELKDLNEA 485 (559)
T ss_pred HHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHhHHHH
Confidence 99999999999999987654 4 889999999999999999999999999887653 2557899999999999999999
Q ss_pred HHHHHHHHH
Q 038429 240 IWVSSHIEK 248 (258)
Q Consensus 240 ~~~~~~m~~ 248 (258)
.+.+..-++
T Consensus 486 a~~yek~v~ 494 (559)
T KOG1155|consen 486 AQYYEKYVE 494 (559)
T ss_pred HHHHHHHHH
Confidence 998886654
No 43
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.81 E-value=1.2e-06 Score=79.48 Aligned_cols=148 Identities=7% Similarity=-0.092 Sum_probs=95.3
Q ss_pred CcccccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCCCC-hhhHHHH--HHHHhcCCChh
Q 038429 29 HPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPN-LYTWNTL--IRAYSSSDEPI 105 (258)
Q Consensus 29 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~l--i~~~~~~g~~~ 105 (258)
...+.|+.+.|.+.+.+..+....-.+.++ .++..+...| +.++|...+++...|+ ...+..+ ...+...|+++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G--~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAG--RDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcC--CcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHH
Confidence 455678888888888888776533222344 7777777778 8888888888776553 3333333 45677778888
Q ss_pred hHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc---cCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 038429 106 QSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF---EDDLVISNSLIHFYAVCGDLAMAYCVFVMIG 181 (258)
Q Consensus 106 ~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 181 (258)
+|+++|+++.+.. +-+...+..++..+...++.++|...++.+ .|+...+-.++..+...++..+|.+.++++.
T Consensus 120 ~Aiely~kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 120 QALALWQSSLKKD--PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHHHHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 8888888883322 223455667777778888888888887777 4554444333333333445545666666653
No 44
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.81 E-value=1.3e-06 Score=79.72 Aligned_cols=209 Identities=10% Similarity=0.006 Sum_probs=152.9
Q ss_pred hhHHHHHHHHHhh-ccCcchh-hhh----hhhhhhhccCCCChHHHHHHhccCCCCC---h-hhHHHHHHHHhcCCChhh
Q 038429 37 KQLKRIHAQMLST-DFFFDPY-SAS----KLFTPCALSTFSSLEYARKMFDQIPQPN---L-YTWNTLIRAYSSSDEPIQ 106 (258)
Q Consensus 37 ~~a~~~~~~m~~~-~~~~~~~-~~~----~li~~~~~~~~~~~~~a~~~~~~m~~~~---~-~~~~~li~~~~~~g~~~~ 106 (258)
++|...++.+.+. .-.|+.. .+. ..+..+...+ +.++|...|+.+.+.+ + ..-..+...|...|++++
T Consensus 213 d~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g--~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~ 290 (765)
T PRK10049 213 DRALAQYDALEALWHDNPDATADYQRARIDRLGALLARD--RYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEK 290 (765)
T ss_pred HHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhh--hHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHH
Confidence 6778888888754 2233221 111 1123445667 9999999999987532 1 122235778999999999
Q ss_pred HHHHHHHhHhcCCCCC--CcchHHHHHHHhcCcCCcchhhhhhhcc---cC-------------c---hhHHHHHHHHHH
Q 038429 107 SFMIFLQLVYNSPYFP--NEFTLPFVIKAAARPVQFRVGQAIHGMF---ED-------------D---LVISNSLIHFYA 165 (258)
Q Consensus 107 a~~~~~~m~~~~~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~---~~-------------~---~~~~~~li~~~~ 165 (258)
|+..|+.........+ .......+..++...|++++|...++.+ .| + ...+..+...+.
T Consensus 291 A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~ 370 (765)
T PRK10049 291 AQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAK 370 (765)
T ss_pred HHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHH
Confidence 9999999833221111 1234666777889999999999998888 22 1 124456778889
Q ss_pred hcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHhccCChhHHHH
Q 038429 166 VCGDLAMAYCVFVMIGK--K-DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDE-VTMVVVLSACAKKRDLEFGIW 241 (258)
Q Consensus 166 ~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~t~~~li~~~~~~g~~~~a~~ 241 (258)
..|+.++|+++++++.. | +...+..+...+...|+.++|+..+++..+. .||. ..+......+.+.|++++|..
T Consensus 371 ~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~ 448 (765)
T PRK10049 371 YSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDV 448 (765)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHH
Confidence 99999999999998764 4 6678889999999999999999999988774 4764 556666778889999999999
Q ss_pred HHHHHHHc
Q 038429 242 VSSHIEKN 249 (258)
Q Consensus 242 ~~~~m~~~ 249 (258)
+++++.+.
T Consensus 449 ~~~~ll~~ 456 (765)
T PRK10049 449 LTDDVVAR 456 (765)
T ss_pred HHHHHHHh
Confidence 99999864
No 45
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.79 E-value=1.1e-06 Score=72.37 Aligned_cols=199 Identities=14% Similarity=0.097 Sum_probs=163.2
Q ss_pred cccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC---CChhhHHHHHHHHhcCCChhhHH
Q 038429 32 FLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ---PNLYTWNTLIRAYSSSDEPIQSF 108 (258)
Q Consensus 32 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~ 108 (258)
-.|+++.|...+.+.+...-..+...||.=+. +-+.| ++++|+..|-.+.. .+....-.+.+.|-...++..|+
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfniglt-~e~~~--~ldeald~f~klh~il~nn~evl~qianiye~led~aqai 578 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFNIGLT-AEALG--NLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAI 578 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHHhccc-HHHhc--CHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHH
Confidence 35899999999999998776666666766554 44567 99999999977643 67777788888888888999999
Q ss_pred HHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhcCCHHHHHHHHHh--cCC
Q 038429 109 MIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVFVM--IGK 182 (258)
Q Consensus 109 ~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~--m~~ 182 (258)
+++.+. ..-++-|+...+.|...|-+.|+-..|.+.+-.- +.+..+..-|-..|....-++++...|+. +.+
T Consensus 579 e~~~q~--~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliq 656 (840)
T KOG2003|consen 579 ELLMQA--NSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQ 656 (840)
T ss_pred HHHHHh--cccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcC
Confidence 998665 2335667888999999999999999998876554 88999999999999999999999999985 468
Q ss_pred CChhhHHHHHHHH-HcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCh
Q 038429 183 KDVVSWNSMISGF-VEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDL 236 (258)
Q Consensus 183 ~~~~~~~~li~~~-~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~ 236 (258)
|+..-|..+|..| .+.|++.+|.++++..... ++-|......|++.|...|--
T Consensus 657 p~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 657 PNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred ccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccch
Confidence 9999999999766 6789999999999987654 777888889999998877743
No 46
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.74 E-value=2e-08 Score=53.37 Aligned_cols=33 Identities=36% Similarity=0.788 Sum_probs=20.1
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC
Q 038429 187 SWNSMISGFVEGGFFEKAIELYREMEVENVKPD 219 (258)
Q Consensus 187 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 219 (258)
+||++|.+|++.|++++|.++|++|.+.|++||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 456666666666666666666666666666555
No 47
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.73 E-value=9.1e-07 Score=69.72 Aligned_cols=212 Identities=13% Similarity=0.026 Sum_probs=135.2
Q ss_pred cchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC-CChh------hHHHHHHHHhcCCChhh
Q 038429 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ-PNLY------TWNTLIRAYSSSDEPIQ 106 (258)
Q Consensus 34 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~-~~~~------~~~~li~~~~~~g~~~~ 106 (258)
++.++|.++|-+|.+.. +-+..+--+|-+.|-+.| ..+.|.++...+.+ ||.. +--.|..-|-..|-++.
T Consensus 49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRG--EvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRG--EVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcc--hHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 56778888888888743 223344445666677777 88888888776654 4322 23345566667778888
Q ss_pred HHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc-cCchhH--------HHHHHHHHHhcCCHHHHHHHH
Q 038429 107 SFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF-EDDLVI--------SNSLIHFYAVCGDLAMAYCVF 177 (258)
Q Consensus 107 a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~--------~~~li~~~~~~g~~~~a~~~~ 177 (258)
|..+|..+ .+.+. --..+.-.|+..|-...+|++|..+-+.+ ..+... |+-|...+.-..+++.|..++
T Consensus 126 AE~~f~~L-~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l 203 (389)
T COG2956 126 AEDIFNQL-VDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELL 203 (389)
T ss_pred HHHHHHHH-hcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 88888877 43221 12335667778888888888887777766 222222 333334444456777777777
Q ss_pred HhcCCCCh---hhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHcC
Q 038429 178 VMIGKKDV---VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250 (258)
Q Consensus 178 ~~m~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 250 (258)
++..+.|. ..--.+-..+...|+++.|.+.|+...+.+...-..+...|..+|.+.|+.++....+..+.+..
T Consensus 204 ~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 204 KKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred HHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 76654222 22223335567778888888888887776544445567777888888888888887777776543
No 48
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.70 E-value=1.8e-06 Score=78.40 Aligned_cols=231 Identities=10% Similarity=-0.006 Sum_probs=151.6
Q ss_pred CCCCceeeecCCCccCcccccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC--CChhhH
Q 038429 14 HPNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ--PNLYTW 91 (258)
Q Consensus 14 ~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~--~~~~~~ 91 (258)
.|+...+..+..+...+...|+++.|.++++.+.+.. +-++..+..++..+...+ +.++|...++...+ |+...+
T Consensus 96 ~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~--q~~eAl~~l~~l~~~dp~~~~~ 172 (822)
T PRK14574 96 SSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAG--RGGVVLKQATELAERDPTVQNY 172 (822)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcC--CHHHHHHHHHHhcccCcchHHH
Confidence 3444444444443446667788899999999988876 334667777788888888 89999998888876 454444
Q ss_pred HHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhh-----------------------
Q 038429 92 NTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG----------------------- 148 (258)
Q Consensus 92 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~----------------------- 148 (258)
-.++..+...++..+|+..++++ .+.. +-+...+..+..++.+.|-...|.++..
T Consensus 173 l~layL~~~~~~~~~AL~~~ekl-l~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~v 250 (822)
T PRK14574 173 MTLSYLNRATDRNYDALQASSEA-VRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQV 250 (822)
T ss_pred HHHHHHHHhcchHHHHHHHHHHH-HHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHH
Confidence 33333333345555688888888 3332 2234455566665555554332222211
Q ss_pred ----------------------cc---------cCchh-HH----HHHHHHHHhcCCHHHHHHHHHhcCCC----ChhhH
Q 038429 149 ----------------------MF---------EDDLV-IS----NSLIHFYAVCGDLAMAYCVFVMIGKK----DVVSW 188 (258)
Q Consensus 149 ----------------------~~---------~~~~~-~~----~~li~~~~~~g~~~~a~~~~~~m~~~----~~~~~ 188 (258)
.+ .|... .| -=.+-++.+.|++.++++.|+.++.+ ...+-
T Consensus 251 r~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~ 330 (822)
T PRK14574 251 RMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYAR 330 (822)
T ss_pred hhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHH
Confidence 11 12111 11 12345666778899999999988854 23455
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHcC-----CCCChhhHHHHHHHHhccCChhHHHHHHHHHHHc
Q 038429 189 NSMISGFVEGGFFEKAIELYREMEVEN-----VKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249 (258)
Q Consensus 189 ~~li~~~~~~g~~~~a~~~~~~m~~~~-----~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 249 (258)
..+..+|...++.++|+.+++...... ..++......|.-++...+++++|..+++.+.+.
T Consensus 331 ~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~ 396 (822)
T PRK14574 331 RWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQ 396 (822)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence 578899999999999999999986642 1223344578899999999999999999999863
No 49
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.69 E-value=1.2e-06 Score=70.35 Aligned_cols=186 Identities=8% Similarity=-0.001 Sum_probs=93.5
Q ss_pred hhhhhhhhhhccCCCChHHHHHHhccCCCCChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCC-CCcchHHHHHHHhc
Q 038429 57 SASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYF-PNEFTLPFVIKAAA 135 (258)
Q Consensus 57 ~~~~li~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-p~~~~~~~ll~~~~ 135 (258)
..-.+.+++...| ..+.+..-...-..|.......+...+...++-+.++.-+++. ...... .+..........+.
T Consensus 37 ~~~~~~Rs~iAlg--~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~-~~~~~~~~~~~~~~~~A~i~~ 113 (290)
T PF04733_consen 37 RDFYQYRSYIALG--QYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKESALEELKEL-LADQAGESNEIVQLLAATILF 113 (290)
T ss_dssp HHHHHHHHHHHTT---HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHC-CCTS---CHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcC--ChhHHHHHhccCCChhHHHHHHHHHHHhCccchHHHHHHHHHH-HHhccccccHHHHHHHHHHHH
Confidence 3344555555566 6655554444444455555544444443333444444444433 222222 12222222223455
Q ss_pred CcCCcchhhhhhhcccCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-ChhhHHHHHHHH----HcCCChHHHHHHHHH
Q 038429 136 RPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKK-DVVSWNSMISGF----VEGGFFEKAIELYRE 210 (258)
Q Consensus 136 ~~~~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~li~~~----~~~g~~~~a~~~~~~ 210 (258)
..|++++|.+++... .+.......+..|.+.++++.|.+.++.|++- +-.+...+..++ ...+.+.+|..+|++
T Consensus 114 ~~~~~~~AL~~l~~~-~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~E 192 (290)
T PF04733_consen 114 HEGDYEEALKLLHKG-GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEE 192 (290)
T ss_dssp CCCHHHHHHCCCTTT-TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHH
T ss_pred HcCCHHHHHHHHHcc-CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 666677666666655 33444455666677777777777777766652 222333333332 223356677777777
Q ss_pred HHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHH
Q 038429 211 MEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIE 247 (258)
Q Consensus 211 m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 247 (258)
+.+. +.++..+.+.+..+....|++++|.+++.+..
T Consensus 193 l~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al 228 (290)
T PF04733_consen 193 LSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEAL 228 (290)
T ss_dssp HHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHC
T ss_pred HHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 5443 45566666666666667777777776666643
No 50
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.69 E-value=3.2e-08 Score=52.55 Aligned_cols=35 Identities=20% Similarity=0.256 Sum_probs=33.3
Q ss_pred hhHHHHHHHHhccCChhHHHHHHHHHHHcCCcccc
Q 038429 221 VTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255 (258)
Q Consensus 221 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 255 (258)
.+|+++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999985
No 51
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.68 E-value=3.7e-06 Score=68.05 Aligned_cols=213 Identities=12% Similarity=-0.047 Sum_probs=147.7
Q ss_pred ccccchhhHHHHHHHHHhhc-cCcc--hhhhhhhhhhhhccCCCChHHHHHHhccCCC---CChhhHHHHHHHHhcCCCh
Q 038429 31 HFLTNQKQLKRIHAQMLSTD-FFFD--PYSASKLFTPCALSTFSSLEYARKMFDQIPQ---PNLYTWNTLIRAYSSSDEP 104 (258)
Q Consensus 31 ~~~~~~~~a~~~~~~m~~~~-~~~~--~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~ 104 (258)
...+..+.+..-+.+++... ..|+ ...|..+-..+...| +.+.|...|++..+ .+...|+.+...+...|++
T Consensus 37 ~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g--~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~ 114 (296)
T PRK11189 37 QPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLG--LRALARNDFSQALALRPDMADAYNYLGIYLTQAGNF 114 (296)
T ss_pred CCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCH
Confidence 33456777778888887543 2222 345777777888889 99999999987653 4678899999999999999
Q ss_pred hhHHHHHHHhHhcCCCCCC-cchHHHHHHHhcCcCCcchhhhhhhcc---cCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 038429 105 IQSFMIFLQLVYNSPYFPN-EFTLPFVIKAAARPVQFRVGQAIHGMF---EDDLVISNSLIHFYAVCGDLAMAYCVFVMI 180 (258)
Q Consensus 105 ~~a~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 180 (258)
++|...|+.. .+ +.|+ ..+|..+..++...|++++|...++.. .|+..........+...++.++|.+.|...
T Consensus 115 ~~A~~~~~~A-l~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~ 191 (296)
T PRK11189 115 DAAYEAFDSV-LE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQR 191 (296)
T ss_pred HHHHHHHHHH-HH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 9999999988 33 2344 567788888889999999999999888 444332222233345678899999999654
Q ss_pred CCC-ChhhHHHHHHHHHcCCChHHHHHHHHHHHHc-C----CCC-ChhhHHHHHHHHhccCChhHHHHHHHHHHHcC
Q 038429 181 GKK-DVVSWNSMISGFVEGGFFEKAIELYREMEVE-N----VKP-DEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250 (258)
Q Consensus 181 ~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~----~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 250 (258)
... +...|..-+ .....|+..++ ..+..+.+. . +.| ....|..+...+.+.|++++|...|++..+.+
T Consensus 192 ~~~~~~~~~~~~~-~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 192 YEKLDKEQWGWNI-VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HhhCCccccHHHH-HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 332 222333222 22334555544 355555432 1 112 23578899999999999999999999988655
No 52
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.67 E-value=1.3e-06 Score=68.90 Aligned_cols=197 Identities=12% Similarity=0.056 Sum_probs=144.4
Q ss_pred CCCceeeecCCCccCcccccchhhHHHHHHHHHhhc-cCcc--hhhhhhhhhhhhccCCCChHHHHHHhccCCC---CCh
Q 038429 15 PNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTD-FFFD--PYSASKLFTPCALSTFSSLEYARKMFDQIPQ---PNL 88 (258)
Q Consensus 15 p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~-~~~~--~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~---~~~ 88 (258)
-|+.|+..-+.+...+.+.|..++|.++|..+..+. ..-+ ....-.|-.=|..+| -++.|+.+|..+.. .-.
T Consensus 64 ~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aG--l~DRAE~~f~~L~de~efa~ 141 (389)
T COG2956 64 EDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAG--LLDRAEDIFNQLVDEGEFAE 141 (389)
T ss_pred cCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHhcchhhhH
Confidence 455566665555668889999999999999888652 2111 123445667788889 99999999998865 234
Q ss_pred hhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcc----hHHHHHHHhcCcCCcchhhhhhhcc----cCchhHHHHH
Q 038429 89 YTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF----TLPFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSL 160 (258)
Q Consensus 89 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~l 160 (258)
.+...|+..|-+..+|++|+++-++. .+.+-.+... -|--+...+....+++.|...+... +..+..--.+
T Consensus 142 ~AlqqLl~IYQ~treW~KAId~A~~L-~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~l 220 (389)
T COG2956 142 GALQQLLNIYQATREWEKAIDVAERL-VKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIIL 220 (389)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH-HHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhh
Confidence 56788999999999999999999988 4443333221 2334444555567788888888877 3344455556
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCCh----hhHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 038429 161 IHFYAVCGDLAMAYCVFVMIGKKDV----VSWNSMISGFVEGGFFEKAIELYREMEVE 214 (258)
Q Consensus 161 i~~~~~~g~~~~a~~~~~~m~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 214 (258)
-+.+...|++++|.+.++...+.|. .+...|..+|...|+.++....+.++.+.
T Consensus 221 G~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 221 GRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred hHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 6788899999999999998877544 46778889999999999998888877554
No 53
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.65 E-value=5.3e-08 Score=51.38 Aligned_cols=33 Identities=27% Similarity=0.558 Sum_probs=17.8
Q ss_pred hhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC
Q 038429 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKP 218 (258)
Q Consensus 186 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 218 (258)
.+||.+|.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 345555555555555555555555555555544
No 54
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.58 E-value=9.8e-08 Score=50.34 Aligned_cols=33 Identities=27% Similarity=0.418 Sum_probs=32.0
Q ss_pred hhHHHHHHHHhccCChhHHHHHHHHHHHcCCcc
Q 038429 221 VTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKM 253 (258)
Q Consensus 221 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 253 (258)
.||+.++++|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 689999999999999999999999999999988
No 55
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=2.3e-06 Score=70.53 Aligned_cols=207 Identities=12% Similarity=0.068 Sum_probs=155.7
Q ss_pred cchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC------CChhhHHHHHHHHhcCCCh-hh
Q 038429 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ------PNLYTWNTLIRAYSSSDEP-IQ 106 (258)
Q Consensus 34 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~------~~~~~~~~li~~~~~~g~~-~~ 106 (258)
...+++.+=.......|+..+...-+....+..... |++.|+.+|++..+ .|..+|+.++-.-.....+ --
T Consensus 241 ~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~r--DfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~L 318 (559)
T KOG1155|consen 241 HQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQR--DFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYL 318 (559)
T ss_pred HHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhh--hHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHH
Confidence 344555555556666676666665555555556666 99999999998865 4667788776544332211 11
Q ss_pred HHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 038429 107 SFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182 (258)
Q Consensus 107 a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 182 (258)
|..+++ -.... +.|.-++.+.|.-.++.++|...|+.. +.....|+.+-+-|....+...|.+-++...+
T Consensus 319 A~~v~~----idKyR--~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd 392 (559)
T KOG1155|consen 319 AQNVSN----IDKYR--PETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD 392 (559)
T ss_pred HHHHHH----hccCC--ccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh
Confidence 222221 11222 356777788888888999999999988 56667999999999999999999999998765
Q ss_pred ---CChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHhccCChhHHHHHHHHHHHcC
Q 038429 183 ---KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKP-DEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250 (258)
Q Consensus 183 ---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 250 (258)
.|-..|-.|-.+|.-.+...-|+-+|++..+ ++| |...|.+|.++|.+.++.++|...|......|
T Consensus 393 i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~ 462 (559)
T KOG1155|consen 393 INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG 462 (559)
T ss_pred cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc
Confidence 3777899999999999999999999998776 566 66899999999999999999999999887655
No 56
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.55 E-value=6e-06 Score=69.72 Aligned_cols=179 Identities=11% Similarity=-0.012 Sum_probs=138.7
Q ss_pred cCcccccchhhHHHHHHHHHhhccCcchh-------hhhhhhhhhhccCCCChHHHHHHhccCCC---CChhhHHHHHHH
Q 038429 28 RHPHFLTNQKQLKRIHAQMLSTDFFFDPY-------SASKLFTPCALSTFSSLEYARKMFDQIPQ---PNLYTWNTLIRA 97 (258)
Q Consensus 28 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-------~~~~li~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~ 97 (258)
..+.+.|+++.+..++..+.+.+..++.. .|..++....... +.+...++++..++ .+......+...
T Consensus 195 ~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~--~~~~l~~~w~~lp~~~~~~~~~~~~~A~~ 272 (398)
T PRK10747 195 QAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQ--GSEGLKRWWKNQSRKTRHQVALQVAMAEH 272 (398)
T ss_pred HHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHhCCHHHhCCHHHHHHHHHH
Confidence 36677799999999999999887653331 2333444444445 67777888887764 577888999999
Q ss_pred HhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhcCCHHHH
Q 038429 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMA 173 (258)
Q Consensus 98 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a 173 (258)
+...|+.++|..++++. .+. +|+.. -.++.+....++.+.+....+.. +.|.....++-..+.+.|++++|
T Consensus 273 l~~~g~~~~A~~~L~~~-l~~--~~~~~--l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A 347 (398)
T PRK10747 273 LIECDDHDTAQQIILDG-LKR--QYDER--LVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEA 347 (398)
T ss_pred HHHCCCHHHHHHHHHHH-Hhc--CCCHH--HHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999888 442 44442 22345555668888888887777 55666788999999999999999
Q ss_pred HHHHHhcCC--CChhhHHHHHHHHHcCCChHHHHHHHHHHHH
Q 038429 174 YCVFVMIGK--KDVVSWNSMISGFVEGGFFEKAIELYREMEV 213 (258)
Q Consensus 174 ~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 213 (258)
.+.|+...+ |+..+|..+-..+.+.|+.++|..++++-..
T Consensus 348 ~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 348 SLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999998754 8888999999999999999999999987643
No 57
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.53 E-value=6.6e-06 Score=67.88 Aligned_cols=172 Identities=13% Similarity=0.187 Sum_probs=115.9
Q ss_pred ChHHHHHHhccCCCCChhhHHHHH---HHHhcCCChhhHHHHHHHhHhcCCC-CCCcchHHHHHHHhcCcCCcchhhhhh
Q 038429 72 SLEYARKMFDQIPQPNLYTWNTLI---RAYSSSDEPIQSFMIFLQLVYNSPY-FPNEFTLPFVIKAAARPVQFRVGQAIH 147 (258)
Q Consensus 72 ~~~~a~~~~~~m~~~~~~~~~~li---~~~~~~g~~~~a~~~~~~m~~~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~ 147 (258)
++++|.+.+++....|...-.+|. -.+-..|++++|++.|-.+ . ++ .-+..+...+.+.|-...+...|.+++
T Consensus 505 d~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~kl-h--~il~nn~evl~qianiye~led~aqaie~~ 581 (840)
T KOG2003|consen 505 DLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKL-H--AILLNNAEVLVQIANIYELLEDPAQAIELL 581 (840)
T ss_pred cHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHH-H--HHHHhhHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 455555555544433332222222 2234456666666666443 1 11 223445555556666666666666665
Q ss_pred hcc----cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCh
Q 038429 148 GMF----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK--K-DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDE 220 (258)
Q Consensus 148 ~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 220 (258)
... +.|..+..-|-..|-+.|+-..|.+..-.--+ | |+.|..-|-.-|....-+++++.+|++..- +.|+.
T Consensus 582 ~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~ 659 (840)
T KOG2003|consen 582 MQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQ 659 (840)
T ss_pred HHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccH
Confidence 555 66777888888888888888888776654433 3 788888888888999999999999988543 78999
Q ss_pred hhHHHHHHHHh-ccCChhHHHHHHHHHHH
Q 038429 221 VTMVVVLSACA-KKRDLEFGIWVSSHIEK 248 (258)
Q Consensus 221 ~t~~~li~~~~-~~g~~~~a~~~~~~m~~ 248 (258)
.-|..+|..|. +.|++++|.++++...+
T Consensus 660 ~kwqlmiasc~rrsgnyqka~d~yk~~hr 688 (840)
T KOG2003|consen 660 SKWQLMIASCFRRSGNYQKAFDLYKDIHR 688 (840)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 99999998875 57999999999998754
No 58
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.49 E-value=1.5e-05 Score=64.57 Aligned_cols=190 Identities=12% Similarity=-0.018 Sum_probs=132.2
Q ss_pred CcccccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC---CChhhHHHHHHHHhcCCChh
Q 038429 29 HPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ---PNLYTWNTLIRAYSSSDEPI 105 (258)
Q Consensus 29 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~ 105 (258)
.+.+.|+.+.|...|....+.. +.++..|+.+-..+...| ++++|...|++..+ .+..+|..+...+...|+++
T Consensus 73 ~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g--~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~ 149 (296)
T PRK11189 73 LYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAG--NFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYE 149 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 4456788899999999988876 446789999999999999 99999999997754 35678899999999999999
Q ss_pred hHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc--cCchhHHHHHHHHHHhcCCHHHHHHHHHhcC--
Q 038429 106 QSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF--EDDLVISNSLIHFYAVCGDLAMAYCVFVMIG-- 181 (258)
Q Consensus 106 ~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~-- 181 (258)
+|++.|+.. .+. .|+..........+...+++++|...+... ..+...|. ........|+.+.+ +.+..+.
T Consensus 150 eA~~~~~~a-l~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~-~~~~~~~lg~~~~~-~~~~~~~~~ 224 (296)
T PRK11189 150 LAQDDLLAF-YQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWG-WNIVEFYLGKISEE-TLMERLKAG 224 (296)
T ss_pred HHHHHHHHH-HHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccH-HHHHHHHccCCCHH-HHHHHHHhc
Confidence 999999988 332 344322222233344567899999888655 21222222 12223335555443 2333322
Q ss_pred -C-------CChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHH
Q 038429 182 -K-------KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVL 227 (258)
Q Consensus 182 -~-------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li 227 (258)
+ .....|..+-..+...|+.++|...|++..+.+ .||..-+...+
T Consensus 225 ~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~~~e~~~~~ 277 (296)
T PRK11189 225 ATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VYNFVEHRYAL 277 (296)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CchHHHHHHHH
Confidence 1 134578899999999999999999999988764 34655554433
No 59
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.47 E-value=1.7e-05 Score=67.27 Aligned_cols=180 Identities=12% Similarity=0.059 Sum_probs=128.2
Q ss_pred cCcccccchhhHHHHHHHHHhhccCcchhh-------hhhhhhhhhccCCCChHHHHHHhccCCC---CChhhHHHHHHH
Q 038429 28 RHPHFLTNQKQLKRIHAQMLSTDFFFDPYS-------ASKLFTPCALSTFSSLEYARKMFDQIPQ---PNLYTWNTLIRA 97 (258)
Q Consensus 28 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-------~~~li~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~ 97 (258)
..+...|+++.+.+++..+.+.+..+.... +..++..-.... ..+.....++..+. .+...+..+...
T Consensus 195 ~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~--~~~~L~~~~~~~p~~~~~~~~l~~~~a~~ 272 (409)
T TIGR00540 195 EAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADE--GIDGLLNWWKNQPRHRRHNIALKIALAEH 272 (409)
T ss_pred HHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHCCHHHhCCHHHHHHHHHH
Confidence 367788999999999999998875433322 111121112222 44566666666653 488889999999
Q ss_pred HhcCCChhhHHHHHHHhHhcCCCCCCcch---HHHHHHHhcCcCCcchhhhhhhcc----cCch--hHHHHHHHHHHhcC
Q 038429 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFT---LPFVIKAAARPVQFRVGQAIHGMF----EDDL--VISNSLIHFYAVCG 168 (258)
Q Consensus 98 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~---~~~ll~~~~~~~~~~~a~~~~~~~----~~~~--~~~~~li~~~~~~g 168 (258)
+...|+.++|..++++..+ . .||... .....-.....++.+.+...++.. +.|. ....++-..+.+.|
T Consensus 273 l~~~g~~~~A~~~l~~~l~-~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~ 349 (409)
T TIGR00540 273 LIDCDDHDSAQEIIFDGLK-K--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHG 349 (409)
T ss_pred HHHCCChHHHHHHHHHHHh-h--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcc
Confidence 9999999999999999833 2 244332 122222233456667777776665 3444 56668889999999
Q ss_pred CHHHHHHHHH--hc--CCCChhhHHHHHHHHHcCCChHHHHHHHHHHH
Q 038429 169 DLAMAYCVFV--MI--GKKDVVSWNSMISGFVEGGFFEKAIELYREME 212 (258)
Q Consensus 169 ~~~~a~~~~~--~m--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 212 (258)
++++|.+.|+ .. ..|+...+..+...+.+.|+.++|.++|++-.
T Consensus 350 ~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 350 EFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred cHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999 45 35888889999999999999999999998753
No 60
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.44 E-value=4.7e-06 Score=71.24 Aligned_cols=191 Identities=12% Similarity=0.056 Sum_probs=143.5
Q ss_pred hhhhhhhhhhhhccCCCChHHHHHHhccCCC----------CChhh-HHHHHHHHhcCCChhhHHHHHHHhHh--cCCCC
Q 038429 55 PYSASKLFTPCALSTFSSLEYARKMFDQIPQ----------PNLYT-WNTLIRAYSSSDEPIQSFMIFLQLVY--NSPYF 121 (258)
Q Consensus 55 ~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~----------~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~ 121 (258)
..+...|...|...| +++.|..++++..+ +.+.+ .+.+...|...+++++|..+|+++.. +...-
T Consensus 199 ~~~~~~La~~y~~~g--~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G 276 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQG--RLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFG 276 (508)
T ss_pred HHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC
Confidence 346677999999999 99999999876532 34433 33477788899999999999998842 11112
Q ss_pred CC----cchHHHHHHHhcCcCCcchhhhhhhcc-----------cCchh-HHHHHHHHHHhcCCHHHHHHHHHhcCC---
Q 038429 122 PN----EFTLPFVIKAAARPVQFRVGQAIHGMF-----------EDDLV-ISNSLIHFYAVCGDLAMAYCVFVMIGK--- 182 (258)
Q Consensus 122 p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~-----------~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~--- 182 (258)
++ ..+++.|-.+|.+.|++++|+..++.. .|.+. -.+.+...|+..+++++|..+++...+
T Consensus 277 ~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~ 356 (508)
T KOG1840|consen 277 EDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYL 356 (508)
T ss_pred CCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 22 345777777899999999988777666 34443 466777888899999999998875432
Q ss_pred ----C-C---hhhHHHHHHHHHcCCChHHHHHHHHHHHHc----CC--CCC-hhhHHHHHHHHhccCChhHHHHHHHHHH
Q 038429 183 ----K-D---VVSWNSMISGFVEGGFFEKAIELYREMEVE----NV--KPD-EVTMVVVLSACAKKRDLEFGIWVSSHIE 247 (258)
Q Consensus 183 ----~-~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~--~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~ 247 (258)
+ + ..+++.|-..|-..|++++|++++++.... +- .+. ...++.|-..|.+.++.++|.++|.+-.
T Consensus 357 ~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~ 436 (508)
T KOG1840|consen 357 DAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAK 436 (508)
T ss_pred hhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 2 2 358999999999999999999999987543 12 222 4568899999999999999999998753
No 61
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.44 E-value=3.2e-07 Score=47.15 Aligned_cols=29 Identities=41% Similarity=0.786 Sum_probs=15.8
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHHcC
Q 038429 187 SWNSMISGFVEGGFFEKAIELYREMEVEN 215 (258)
Q Consensus 187 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 215 (258)
|||.+|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
No 62
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.40 E-value=4.9e-05 Score=57.44 Aligned_cols=185 Identities=8% Similarity=-0.071 Sum_probs=147.7
Q ss_pred hhhhhhhhhccCCCChHHHHHHhccCCC---CChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCC-CcchHHHHHHH
Q 038429 58 ASKLFTPCALSTFSSLEYARKMFDQIPQ---PNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFP-NEFTLPFVIKA 133 (258)
Q Consensus 58 ~~~li~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~ll~~ 133 (258)
.-.|--.|...| +...|..-+++..+ .+..+|..+...|-+.|+.+.|.+.|+...+ +.| +..+.|..---
T Consensus 38 rlqLal~YL~~g--d~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~F 112 (250)
T COG3063 38 RLQLALGYLQQG--DYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHCC--CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhHH
Confidence 445666778888 99999888887765 3456788899999999999999999987632 233 34566777777
Q ss_pred hcCcCCcchhhhhhhcc------cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHcCCChHHH
Q 038429 134 AARPVQFRVGQAIHGMF------EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK--K-DVVSWNSMISGFVEGGFFEKA 204 (258)
Q Consensus 134 ~~~~~~~~~a~~~~~~~------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a 204 (258)
+|..|++++|...|+.. ..-..+|..+.-+..+.|+++.|.+.|++-.+ | ...+.-.+.....+.|+.-.|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 78888999999888888 22345788888888899999999999988765 3 445777888888999999999
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHH
Q 038429 205 IELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEK 248 (258)
Q Consensus 205 ~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 248 (258)
..+++.....+. ++..+....|+.-.+.|+.+.+.+.=..+.+
T Consensus 193 r~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 193 RLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 999999888765 8999999999999999999988887666654
No 63
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.39 E-value=7.1e-06 Score=65.03 Aligned_cols=214 Identities=9% Similarity=-0.044 Sum_probs=168.1
Q ss_pred CcccccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC--CChhh-HHHHHHHHhcCCChh
Q 038429 29 HPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ--PNLYT-WNTLIRAYSSSDEPI 105 (258)
Q Consensus 29 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~--~~~~~-~~~li~~~~~~g~~~ 105 (258)
.+-+.|.+++|...+..-... .|.+.||-.|-.+|.+.. +...|+.+|.+... |..+| ...+.+.+-..++.+
T Consensus 232 CylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~rid--QP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~ 307 (478)
T KOG1129|consen 232 CYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRID--QPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQE 307 (478)
T ss_pred HHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhc--cHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHH
Confidence 344567778887777766554 567788889999999999 99999999988764 54444 455777778889999
Q ss_pred hHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhcCCHHHHHHHHHhc-
Q 038429 106 QSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVFVMI- 180 (258)
Q Consensus 106 ~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m- 180 (258)
+|.++|+...+.. +.++.+..++...|-..++++.|.+.+..+ .-+...|+.+--+|.-.+.+|-++.-|.+.
T Consensus 308 ~a~~lYk~vlk~~--~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAl 385 (478)
T KOG1129|consen 308 DALQLYKLVLKLH--PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRAL 385 (478)
T ss_pred HHHHHHHHHHhcC--CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHH
Confidence 9999999984433 346677778888888899999999999988 667788999998999999999988877654
Q ss_pred ---CCCCh--hhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHc
Q 038429 181 ---GKKDV--VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249 (258)
Q Consensus 181 ---~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 249 (258)
.+|+. ..|-.+-...+..|++.-|.+-|+-..... .-+...++.|--.-.+.|+++.|..+++.....
T Consensus 386 stat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 386 STATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred hhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 44543 467777777788999999999998776653 234567888888889999999999999987643
No 64
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.35 E-value=3.3e-05 Score=60.31 Aligned_cols=59 Identities=12% Similarity=0.130 Sum_probs=47.4
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHcC--CCCChhhHHHHHHHHhccCChhHHHHHHHHHHHc
Q 038429 191 MISGFVEGGFFEKAIELYREMEVEN--VKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249 (258)
Q Consensus 191 li~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 249 (258)
+-..+.+.|++.+|...+++..... -+.....+..+..++.+.|++++|..+++.+...
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4456788899999999999987752 1123467889999999999999999999988754
No 65
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.35 E-value=6.5e-07 Score=45.98 Aligned_cols=31 Identities=26% Similarity=0.310 Sum_probs=29.4
Q ss_pred hhHHHHHHHHhccCChhHHHHHHHHHHHcCC
Q 038429 221 VTMVVVLSACAKKRDLEFGIWVSSHIEKNGI 251 (258)
Q Consensus 221 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 251 (258)
.||+.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4899999999999999999999999999885
No 66
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.34 E-value=5.8e-05 Score=61.29 Aligned_cols=195 Identities=7% Similarity=-0.006 Sum_probs=149.8
Q ss_pred hhhhhhhhccCCCChHHHHHHhccCCC---CChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhc
Q 038429 59 SKLFTPCALSTFSSLEYARKMFDQIPQ---PNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135 (258)
Q Consensus 59 ~~li~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~ 135 (258)
..+..+.-+..+|++..|+++..+-.+ .....|-.-..+-.+.|+.+.+-..+.+. .+..-.++...+-+......
T Consensus 86 ~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~ea-ae~~~~~~l~v~ltrarlll 164 (400)
T COG3071 86 KALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEA-AELAGDDTLAVELTRARLLL 164 (400)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHH-hccCCCchHHHHHHHHHHHH
Confidence 346666666666799999999876543 45666777788888999999999999988 54433455666777778888
Q ss_pred CcCCcchhhhhhhcc----cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----------ChhhHHHHHHHHHcCCC
Q 038429 136 RPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKK-----------DVVSWNSMISGFVEGGF 200 (258)
Q Consensus 136 ~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----------~~~~~~~li~~~~~~g~ 200 (258)
..|+.+.|..-...+ +...........+|.+.|++.....++..+.+. -..+|+.++.-....+.
T Consensus 165 ~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~ 244 (400)
T COG3071 165 NRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNG 244 (400)
T ss_pred hCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhcccc
Confidence 899988887666555 667788899999999999999999999998763 23578888887777777
Q ss_pred hHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHcCCcccc
Q 038429 201 FEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255 (258)
Q Consensus 201 ~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 255 (258)
.+.-...|+..-.. .+-+...-.+++.-+.++|+.++|.++..+..++++.|..
T Consensus 245 ~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L 298 (400)
T COG3071 245 SEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL 298 (400)
T ss_pred chHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH
Confidence 77766677665443 4556666777788888999999999999998888887763
No 67
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.29 E-value=5.2e-06 Score=66.67 Aligned_cols=144 Identities=13% Similarity=0.002 Sum_probs=85.1
Q ss_pred hhhhccCCCChHHHHHHhccCCCCChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHh----cCcC
Q 038429 63 TPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAA----ARPV 138 (258)
Q Consensus 63 ~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~----~~~~ 138 (258)
..+...| ++++|.+++... .+.......+..|.+.++++.|.+.++.| ++.+ +..+...+..++ .-.+
T Consensus 110 ~i~~~~~--~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~-~~~~---eD~~l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 110 TILFHEG--DYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNM-QQID---EDSILTQLAEAWVNLATGGE 181 (290)
T ss_dssp HHHCCCC--HHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHH-HCCS---CCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHcC--CHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHH-HhcC---CcHHHHHHHHHHHHHHhCch
Confidence 3444555 777777777655 45566666777777777777777777777 5442 223343343333 2234
Q ss_pred Ccchhhhhhhcc----cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHcCCCh-HHHHHHHHH
Q 038429 139 QFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKK---DVVSWNSMISGFVEGGFF-EKAIELYRE 210 (258)
Q Consensus 139 ~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~g~~-~~a~~~~~~ 210 (258)
.+..|.-+|+++ .+++.+.|.+..+....|++++|.+++.+..+. +..+.-.+|......|+. +.+.+++..
T Consensus 182 ~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 182 KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 567777777777 456666677777777777777777777665432 444555556555555655 556666666
Q ss_pred HHHc
Q 038429 211 MEVE 214 (258)
Q Consensus 211 m~~~ 214 (258)
++..
T Consensus 262 L~~~ 265 (290)
T PF04733_consen 262 LKQS 265 (290)
T ss_dssp CHHH
T ss_pred HHHh
Confidence 6553
No 68
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.26 E-value=0.00052 Score=56.97 Aligned_cols=214 Identities=11% Similarity=0.020 Sum_probs=135.2
Q ss_pred CcccccchhhHHHHHHHHHhhccCcchhhhhh---hhhhhhccCCCChHHHHHHhccCCC--C-ChhhHHHHHHHHhcCC
Q 038429 29 HPHFLTNQKQLKRIHAQMLSTDFFFDPYSASK---LFTPCALSTFSSLEYARKMFDQIPQ--P-NLYTWNTLIRAYSSSD 102 (258)
Q Consensus 29 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~---li~~~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g 102 (258)
.+...|+++++.+++....... +.+...+.. ........+ ....+.+.++.... | .......+...+...|
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G 128 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAFGLGDFSG--MRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAG 128 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHhccccc--CchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcC
Confidence 4556789999999999988764 334444432 111122234 66666666654322 2 2334455667888999
Q ss_pred ChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc----c--Cch--hHHHHHHHHHHhcCCHHHHH
Q 038429 103 EPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF----E--DDL--VISNSLIHFYAVCGDLAMAY 174 (258)
Q Consensus 103 ~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~--~~~--~~~~~li~~~~~~g~~~~a~ 174 (258)
++++|...+++. .+.. +.+...+..+-..+...|++++|...++.. + ++. ..|..+...+...|++++|.
T Consensus 129 ~~~~A~~~~~~a-l~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 206 (355)
T cd05804 129 QYDRAEEAARRA-LELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAAL 206 (355)
T ss_pred CHHHHHHHHHHH-HhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHH
Confidence 999999999998 4432 344567788888999999999999998887 2 222 24557888899999999999
Q ss_pred HHHHhcCCCCh--hhH----H--HHHHHHHcCCChHHHHHHHHHHHH---cCC--CCChhhHHHHHHHHhccCChhHHHH
Q 038429 175 CVFVMIGKKDV--VSW----N--SMISGFVEGGFFEKAIELYREMEV---ENV--KPDEVTMVVVLSACAKKRDLEFGIW 241 (258)
Q Consensus 175 ~~~~~m~~~~~--~~~----~--~li~~~~~~g~~~~a~~~~~~m~~---~~~--~p~~~t~~~li~~~~~~g~~~~a~~ 241 (258)
++++....+.. ... + .++.-+...|....+.+. +.+.. ... ......-.+...++...|+.+.|..
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~ 285 (355)
T cd05804 207 AIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDK 285 (355)
T ss_pred HHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHH
Confidence 99998753221 222 1 222333334433322222 22211 111 1111222367778889999999999
Q ss_pred HHHHHHH
Q 038429 242 VSSHIEK 248 (258)
Q Consensus 242 ~~~~m~~ 248 (258)
+++.+..
T Consensus 286 ~L~~l~~ 292 (355)
T cd05804 286 LLAALKG 292 (355)
T ss_pred HHHHHHH
Confidence 9998865
No 69
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.25 E-value=0.00024 Score=63.31 Aligned_cols=211 Identities=11% Similarity=0.036 Sum_probs=131.9
Q ss_pred ccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhc---cCCCCChhhHHHHHHHHhcCCChhhHHH
Q 038429 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFD---QIPQPNLYTWNTLIRAYSSSDEPIQSFM 109 (258)
Q Consensus 33 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~---~m~~~~~~~~~~li~~~~~~g~~~~a~~ 109 (258)
.|+.++|..++.++++.. +.....|-.|-..|-..| +.+++...+- ++.+.|..-|-.+-....+.|+++.|.-
T Consensus 152 rg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrG--d~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRG--DIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred hCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcc--cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHH
Confidence 499999999999999887 557888999999999999 9988876653 4445566777777777777787887777
Q ss_pred HHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc---------------------------------------
Q 038429 110 IFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF--------------------------------------- 150 (258)
Q Consensus 110 ~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~--------------------------------------- 150 (258)
.|.+. .+.+ +++...+---...|-+.|+...|...|..+
T Consensus 229 cy~rA-I~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 229 CYSRA-IQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHH-HhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 77776 3322 233333333344455555555544444444
Q ss_pred ------cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC------------------------------------------
Q 038429 151 ------EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK------------------------------------------ 182 (258)
Q Consensus 151 ------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~------------------------------------------ 182 (258)
..+...+|.+...|.+...++.|......+..
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~ic 386 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMIC 386 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhh
Confidence 12233344444444444444444433322210
Q ss_pred -------------------------CChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChh
Q 038429 183 -------------------------KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLE 237 (258)
Q Consensus 183 -------------------------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~ 237 (258)
-+...|.-+..+|...|++.+|+.+|..+......-+...|--+-++|...|..+
T Consensus 387 L~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e 466 (895)
T KOG2076|consen 387 LVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYE 466 (895)
T ss_pred hhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHH
Confidence 0233455566677777777777777777665533334556777777777777777
Q ss_pred HHHHHHHHHHH
Q 038429 238 FGIWVSSHIEK 248 (258)
Q Consensus 238 ~a~~~~~~m~~ 248 (258)
.|.+.+.....
T Consensus 467 ~A~e~y~kvl~ 477 (895)
T KOG2076|consen 467 EAIEFYEKVLI 477 (895)
T ss_pred HHHHHHHHHHh
Confidence 77777776654
No 70
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=0.00017 Score=55.69 Aligned_cols=160 Identities=9% Similarity=0.014 Sum_probs=95.6
Q ss_pred CChhhHHHHHHHHhcCCChhhHHHH-HHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcccCchhHHHHHHHHH
Q 038429 86 PNLYTWNTLIRAYSSSDEPIQSFMI-FLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFY 164 (258)
Q Consensus 86 ~~~~~~~~li~~~~~~g~~~~a~~~-~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~li~~~ 164 (258)
+.......+-..+...++.++-+.- .+.+ ......-+......-...|++.+++++|....+.. .+....-.=...+
T Consensus 70 ~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~-a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-~~lE~~Al~VqI~ 147 (299)
T KOG3081|consen 70 TPLQAVRLLAEYLELESNKKSILASLYELV-ADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-ENLEAAALNVQIL 147 (299)
T ss_pred ChHHHHHHHHHHhhCcchhHHHHHHHHHHH-HhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-chHHHHHHHHHHH
Confidence 3444444444444444444444333 3333 44444444333344445577788888887777663 2222222234445
Q ss_pred HhcCCHHHHHHHHHhcCCC-ChhhHHHHHHHHH----cCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHH
Q 038429 165 AVCGDLAMAYCVFVMIGKK-DVVSWNSMISGFV----EGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239 (258)
Q Consensus 165 ~~~g~~~~a~~~~~~m~~~-~~~~~~~li~~~~----~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a 239 (258)
.|..+++-|.+.++.|.+- +-.|.+.|-.++. ..+.+.+|..+|++|-+. ..|+..+.+....++...|++++|
T Consensus 148 lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeA 226 (299)
T KOG3081|consen 148 LKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEA 226 (299)
T ss_pred HHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHH
Confidence 5667778888888888774 4456665555443 345677888888887653 567777788888888888888888
Q ss_pred HHHHHHHHH
Q 038429 240 IWVSSHIEK 248 (258)
Q Consensus 240 ~~~~~~m~~ 248 (258)
..++++...
T Consensus 227 e~lL~eaL~ 235 (299)
T KOG3081|consen 227 ESLLEEALD 235 (299)
T ss_pred HHHHHHHHh
Confidence 888877654
No 71
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.25 E-value=7.7e-05 Score=69.23 Aligned_cols=194 Identities=9% Similarity=-0.011 Sum_probs=97.4
Q ss_pred chhhhhhhhhhhhccCCCChHHHHHHhccCCC--------CChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcc
Q 038429 54 DPYSASKLFTPCALSTFSSLEYARKMFDQIPQ--------PNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125 (258)
Q Consensus 54 ~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~--------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~ 125 (258)
+...|-.-|......+ +++.|++++++... .-...|-++++.-...|.-+...++|++. .+.. -.-.
T Consensus 1457 SSi~WI~YMaf~Lels--EiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRA-cqyc--d~~~ 1531 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELS--EIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERA-CQYC--DAYT 1531 (1710)
T ss_pred cchHHHHHHHHHhhhh--hhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHH-HHhc--chHH
Confidence 3444555555555555 66666666555432 12234555555555555445555555555 3221 1122
Q ss_pred hHHHHHHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C---ChhhHHHHHHHHH
Q 038429 126 TLPFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK--K---DVVSWNSMISGFV 196 (258)
Q Consensus 126 ~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~---~~~~~~~li~~~~ 196 (258)
.|..|...|.+.+..++|-++++.| .-....|...+..+.+..+-+.|.+++.+..+ | .+......+..-.
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 3555555566666666666666665 33444555566666666655555555554332 1 2222222333334
Q ss_pred cCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHcCCcc
Q 038429 197 EGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKM 253 (258)
Q Consensus 197 ~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 253 (258)
+.|+.+.+..+|+..... .+--...|+..|+.-.+.|+.+.+..+|++....++.|
T Consensus 1612 k~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 455555555555555443 11123445555555555566665666666555555544
No 72
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.22 E-value=5.3e-05 Score=70.23 Aligned_cols=218 Identities=11% Similarity=0.024 Sum_probs=169.4
Q ss_pred eecCCCccCcccccchhhHHHHHHHHHhh-ccCcc---hhhhhhhhhhhhccCCCChHHHHHHhccCCC--CChhhHHHH
Q 038429 21 TVNNGHQRHPHFLTNQKQLKRIHAQMLST-DFFFD---PYSASKLFTPCALSTFSSLEYARKMFDQIPQ--PNLYTWNTL 94 (258)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~a~~~~~~m~~~-~~~~~---~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~l 94 (258)
...+.-++.--+.++++.|.++.++.++. ++.-. ...|-++++.-...| .-+...++|++..+ .....|..|
T Consensus 1459 i~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG--~eesl~kVFeRAcqycd~~~V~~~L 1536 (1710)
T KOG1070|consen 1459 ILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYG--TEESLKKVFERACQYCDAYTVHLKL 1536 (1710)
T ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhC--cHHHHHHHHHHHHHhcchHHHHHHH
Confidence 33333334666678999999999988764 33222 335777777777777 88899999999877 335679999
Q ss_pred HHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc---cCc---hhHHHHHHHHHHhcC
Q 038429 95 IRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF---EDD---LVISNSLIHFYAVCG 168 (258)
Q Consensus 95 i~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~---~~~---~~~~~~li~~~~~~g 168 (258)
...|.+....++|.++|+.|.++-+ -....|...+..+.+..+-+.|..++... -|. .....-.+..=.+.|
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~G 1614 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYG 1614 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcC
Confidence 9999999999999999999977776 45678999999999999999999998887 332 333344445556889
Q ss_pred CHHHHHHHHHhcCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCh--hhHHHHHHHHhccCChhHHHHH
Q 038429 169 DLAMAYCVFVMIGK--K-DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDE--VTMVVVLSACAKKRDLEFGIWV 242 (258)
Q Consensus 169 ~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~t~~~li~~~~~~g~~~~a~~~ 242 (258)
+.+.+..+|+.... | -...|+..|..-.++|+.+.+..+|++....++.|-. ..|.-.+..--..|+-+.+..+
T Consensus 1615 DaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1615 DAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred CchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHH
Confidence 99999999998765 3 5568999999999999999999999999999988754 4577777777777776655444
No 73
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.21 E-value=0.00025 Score=53.68 Aligned_cols=193 Identities=13% Similarity=-0.073 Sum_probs=153.8
Q ss_pred cCcccccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC---CChhhHHHHHHHHhcCCCh
Q 038429 28 RHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ---PNLYTWNTLIRAYSSSDEP 104 (258)
Q Consensus 28 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~ 104 (258)
..+-+.|+...|+.-++..++.. +.+..++..+...|.+.| ..+.|.+.|++..+ .+..+.|+--..+|..|++
T Consensus 43 l~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~G--e~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~ 119 (250)
T COG3063 43 LGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLG--ENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRP 119 (250)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcC--ChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCCh
Confidence 35667899999999999999887 556778999999999999 99999999986543 5677889999999999999
Q ss_pred hhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 038429 105 IQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVFVMI 180 (258)
Q Consensus 105 ~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 180 (258)
++|...|++....-...--..||..+.-+..+.|+++.|+..++.- +-...+.-.+.....+.|++..|...++..
T Consensus 120 ~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~ 199 (250)
T COG3063 120 EEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERY 199 (250)
T ss_pred HHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHH
Confidence 9999999998455445445678999999999999999999999988 445567778888889999999999999887
Q ss_pred CCC---ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHH
Q 038429 181 GKK---DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVV 225 (258)
Q Consensus 181 ~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ 225 (258)
... +..+.-..|..--+.|+.+.+-++=..+... -|...-|.+
T Consensus 200 ~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~q~ 245 (250)
T COG3063 200 QQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEYQT 245 (250)
T ss_pred HhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHh
Confidence 653 5555556667777788887777765555543 355544443
No 74
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.17 E-value=0.0004 Score=60.19 Aligned_cols=215 Identities=11% Similarity=0.026 Sum_probs=132.6
Q ss_pred cccccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC--CChhh-HHHHHHHHhcC-----
Q 038429 30 PHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ--PNLYT-WNTLIRAYSSS----- 101 (258)
Q Consensus 30 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~--~~~~~-~~~li~~~~~~----- 101 (258)
+...|+.++|++.+..-.+. +.............+.+.| +.++|..++..+.. |+-.. |..+..+.+..
T Consensus 14 l~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg--~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLG--RKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccccc
Confidence 34556777777776553332 2223445566666777777 77777777776654 33333 33344443211
Q ss_pred CChhhHHHHHHHhH---------------------------------hcCCCCCCcchHHHHHHHhcCcCCcchhhhhhh
Q 038429 102 DEPIQSFMIFLQLV---------------------------------YNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG 148 (258)
Q Consensus 102 g~~~~a~~~~~~m~---------------------------------~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 148 (258)
.+.+....+|+++. -..|+| .+|+.|-..|...........++.
T Consensus 91 ~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~~ 167 (517)
T PF12569_consen 91 EDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESLVE 167 (517)
T ss_pred ccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHHHH
Confidence 13444455555551 222322 244444444444444333344433
Q ss_pred cc-------------------cCchh--HHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-hhhHHHHHHHHHcCCChHHH
Q 038429 149 MF-------------------EDDLV--ISNSLIHFYAVCGDLAMAYCVFVMIGK--KD-VVSWNSMISGFVEGGFFEKA 204 (258)
Q Consensus 149 ~~-------------------~~~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~--~~-~~~~~~li~~~~~~g~~~~a 204 (258)
.. +|+.. ++.-+-..|-..|++++|.+..+...+ |+ +..|..-...+-+.|++.+|
T Consensus 168 ~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~A 247 (517)
T PF12569_consen 168 EYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEA 247 (517)
T ss_pred HHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 33 23343 345557778889999999999987765 43 44677777888899999999
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHcCC
Q 038429 205 IELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGI 251 (258)
Q Consensus 205 ~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 251 (258)
.+.++....... -|...=+-....+.+.|++++|.+++....+.+.
T Consensus 248 a~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 248 AEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred HHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 999988877543 3566667778888899999999999888776654
No 75
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.15 E-value=3.5e-05 Score=61.23 Aligned_cols=153 Identities=12% Similarity=0.075 Sum_probs=119.0
Q ss_pred HHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhc
Q 038429 92 NTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVC 167 (258)
Q Consensus 92 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~ 167 (258)
+.+-++|.+.|.+.+|...|+.-.++ .|-+.||-.|-++|.+..++..|..++..- +-|+.....+.+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q---~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ---FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc---CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHH
Confidence 56788888999999998888776332 356678888889999988888888888777 44555556667778888
Q ss_pred CCHHHHHHHHHhcCCC---ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHH
Q 038429 168 GDLAMAYCVFVMIGKK---DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSS 244 (258)
Q Consensus 168 g~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~ 244 (258)
+..++|.++++...+. ++....++-.+|.-.++.+-|+++++++.+-|+. +...|+.+--+|.-.+++|.+.--|.
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 8899999999877652 6666667777788888899999999999888874 67778777778888888888887777
Q ss_pred HHHH
Q 038429 245 HIEK 248 (258)
Q Consensus 245 ~m~~ 248 (258)
....
T Consensus 383 RAls 386 (478)
T KOG1129|consen 383 RALS 386 (478)
T ss_pred HHHh
Confidence 6653
No 76
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.14 E-value=2.6e-05 Score=69.74 Aligned_cols=216 Identities=12% Similarity=0.045 Sum_probs=159.6
Q ss_pred CcccccchhhHHHHHHHHHhhccCcch-hhhhhhhhhhhccCCCChHHHHHHhccCCC---CChhhHHHHHHHHhcCCCh
Q 038429 29 HPHFLTNQKQLKRIHAQMLSTDFFFDP-YSASKLFTPCALSTFSSLEYARKMFDQIPQ---PNLYTWNTLIRAYSSSDEP 104 (258)
Q Consensus 29 ~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~ 104 (258)
..-..++.+.|.+.|..+.+.. |+- ..|-.+....-..+ +..+|...+....+ .|+..+.-+-..+.+...+
T Consensus 505 l~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~--~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~ 580 (1018)
T KOG2002|consen 505 LLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMARDKN--NLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEW 580 (1018)
T ss_pred HHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHHHhcc--CcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhh
Confidence 4445568888899999988764 333 23444442222345 78888888876653 5666777777788888888
Q ss_pred hhHHHHHHHhHhcCCCCCCcchHHHHHHHhcC------------cCCcchhhhhhhcc----cCchhHHHHHHHHHHhcC
Q 038429 105 IQSFMIFLQLVYNSPYFPNEFTLPFVIKAAAR------------PVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCG 168 (258)
Q Consensus 105 ~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~------------~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g 168 (258)
..|..-|....++....+|..+.-.|-+.|.. .+..+.|.++|... +.+.+.-|.+--.++..|
T Consensus 581 ~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg 660 (1018)
T KOG2002|consen 581 KPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKG 660 (1018)
T ss_pred cccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhcc
Confidence 88888777664444444666666566665432 22345688887766 778889999999999999
Q ss_pred CHHHHHHHHHhcCCC---ChhhHHHHHHHHHcCCChHHHHHHHHHHHHc-CCCCChhhHHHHHHHHhccCChhHHHHHHH
Q 038429 169 DLAMAYCVFVMIGKK---DVVSWNSMISGFVEGGFFEKAIELYREMEVE-NVKPDEVTMVVVLSACAKKRDLEFGIWVSS 244 (258)
Q Consensus 169 ~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~t~~~li~~~~~~g~~~~a~~~~~ 244 (258)
++.+|.+||...++. +..+|-.+-+.|...|++..|+++|+...+. .-.-+......|-+++.+.|.+.+|.+..-
T Consensus 661 ~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll 740 (1018)
T KOG2002|consen 661 RFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALL 740 (1018)
T ss_pred CchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 999999999988763 5578999999999999999999999887655 333456678899999999999999998877
Q ss_pred HHHH
Q 038429 245 HIEK 248 (258)
Q Consensus 245 ~m~~ 248 (258)
....
T Consensus 741 ~a~~ 744 (1018)
T KOG2002|consen 741 KARH 744 (1018)
T ss_pred HHHH
Confidence 6654
No 77
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=8.4e-05 Score=62.95 Aligned_cols=190 Identities=12% Similarity=0.037 Sum_probs=121.0
Q ss_pred CcchhhhhhhhhhhhccCCCChHHHHHHhccCCC---CChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcch-H
Q 038429 52 FFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ---PNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFT-L 127 (258)
Q Consensus 52 ~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~-~ 127 (258)
+..+.+|=++-..|.-.| ..++|++.|.+... .=...|-..-..|+-.|..+.|+..+... .+ ..|...- +
T Consensus 309 P~~a~sW~aVg~YYl~i~--k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tA-ar--l~~G~hlP~ 383 (611)
T KOG1173|consen 309 PSKALSWFAVGCYYLMIG--KYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTA-AR--LMPGCHLPS 383 (611)
T ss_pred CCCCcchhhHHHHHHHhc--CcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHH-HH--hccCCcchH
Confidence 334556666666666666 78888888875543 23456777888888888888887777655 21 1111111 1
Q ss_pred HHHHHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC----------ChhhHHHHHH
Q 038429 128 PFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKK----------DVVSWNSMIS 193 (258)
Q Consensus 128 ~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----------~~~~~~~li~ 193 (258)
--+---|.+.+++..|+..|... +.|+...+-+--.....+.+.+|...|+....+ -..+++.|-+
T Consensus 384 LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH 463 (611)
T KOG1173|consen 384 LYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGH 463 (611)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHH
Confidence 11222355666777777776666 666666666666666667777777777655421 2235677777
Q ss_pred HHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHH
Q 038429 194 GFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIE 247 (258)
Q Consensus 194 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 247 (258)
+|.+.+..++|+..+++.... .+-|..|+.++.-.|...|+++.|.+.|.+..
T Consensus 464 ~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 464 AYRKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 777777788887777776654 23466777777777777788888777777653
No 78
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.12 E-value=6.6e-05 Score=62.65 Aligned_cols=206 Identities=10% Similarity=-0.051 Sum_probs=149.8
Q ss_pred ccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC---CChhhHHHHHHHHhcCCChhhHHH
Q 038429 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ---PNLYTWNTLIRAYSSSDEPIQSFM 109 (258)
Q Consensus 33 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~ 109 (258)
.|+.-.+..-|+..++....++. .|-.+...|.... +-++....|+.... .|+.+|..--..+.-.+++++|..
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~--~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADEN--QSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhh--ccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHH
Confidence 46777888888888876544322 2777777788888 88888888876543 566777777777777888999999
Q ss_pred HHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C
Q 038429 110 IFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK--K 183 (258)
Q Consensus 110 ~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~ 183 (258)
=|+.. ..-. +-+...|-.+--+.-+.+.+++++..|+.. +.-+..||..-..+...+++++|.+-|+.... |
T Consensus 416 DF~Ka-i~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 416 DFQKA-ISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred HHHHH-hhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 88877 3321 223456666767777888899999999888 55667889899999999999999999986643 3
Q ss_pred C-------h--hhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHhccCChhHHHHHHHHH
Q 038429 184 D-------V--VSWNSMISGFVEGGFFEKAIELYREMEVENVKP-DEVTMVVVLSACAKKRDLEFGIWVSSHI 246 (258)
Q Consensus 184 ~-------~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m 246 (258)
+ . .....++-.=. .+++..|..++++..+. .| ....|..|-..-.+.|++++|.++|++-
T Consensus 494 ~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~--Dpkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIEL--DPKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred ccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHcc--CchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 2 1 11112222112 27788899998887664 33 3457888999999999999999999864
No 79
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.11 E-value=0.00032 Score=60.75 Aligned_cols=219 Identities=12% Similarity=0.054 Sum_probs=150.3
Q ss_pred CcccccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccC---CCChHHHHHHhccCCC--------------------
Q 038429 29 HPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALST---FSSLEYARKMFDQIPQ-------------------- 85 (258)
Q Consensus 29 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~---~~~~~~a~~~~~~m~~-------------------- 85 (258)
.+.+.|+.++|..++..+++.+ +.+..-|..+..+.+-.. ..+.+....+++++..
T Consensus 47 ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~ 125 (517)
T PF12569_consen 47 LLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDE 125 (517)
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHH
Confidence 5667789999999999999998 335555566666652221 1145555666655421
Q ss_pred ---------------CChhhHHHHHHHHhcCCChhhHHHHHHHhHhc---CC----------CCCCc--chHHHHHHHhc
Q 038429 86 ---------------PNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYN---SP----------YFPNE--FTLPFVIKAAA 135 (258)
Q Consensus 86 ---------------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~----------~~p~~--~~~~~ll~~~~ 135 (258)
.-+.+|+.|-..|......+-..+++...... .+ -+|+. .++.-+...|-
T Consensus 126 F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd 205 (517)
T PF12569_consen 126 FKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYD 205 (517)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHH
Confidence 11234555555555444444445555554211 11 12333 24456667788
Q ss_pred CcCCcchhhhhhhcc---cCc-hhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHcCCChHHHHHHH
Q 038429 136 RPVQFRVGQAIHGMF---EDD-LVISNSLIHFYAVCGDLAMAYCVFVMIGK---KDVVSWNSMISGFVEGGFFEKAIELY 208 (258)
Q Consensus 136 ~~~~~~~a~~~~~~~---~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~ 208 (258)
+.|++++|....+.. .|+ +..|..-.+.|-+.|++++|.+.++..++ .|...=+.....+.++|++++|..++
T Consensus 206 ~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~ 285 (517)
T PF12569_consen 206 YLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTA 285 (517)
T ss_pred HhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999977 454 56888889999999999999999988776 36677778888899999999999999
Q ss_pred HHHHHcCCCCChhhH--------HHHHHHHhccCChhHHHHHHHHHHH
Q 038429 209 REMEVENVKPDEVTM--------VVVLSACAKKRDLEFGIWVSSHIEK 248 (258)
Q Consensus 209 ~~m~~~~~~p~~~t~--------~~li~~~~~~g~~~~a~~~~~~m~~ 248 (258)
......+..|-...+ .-...+|.+.|++..|..-|..+.+
T Consensus 286 ~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 286 SLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 888777654432221 3445678899999999988877654
No 80
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.07 E-value=0.00023 Score=54.86 Aligned_cols=150 Identities=13% Similarity=-0.006 Sum_probs=99.4
Q ss_pred HHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhc
Q 038429 92 NTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVC 167 (258)
Q Consensus 92 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~ 167 (258)
..+-..+...|+-+....+.... .. ..+-|............+.|++..|...+.+. ++|...|+.+--+|-+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~-~~-~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKS-AI-AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhh-hc-cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHc
Confidence 55556666666666666555443 11 11223334455777777777777777777777 67777888888888888
Q ss_pred CCHHHHHHHHHhcCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHH
Q 038429 168 GDLAMAYCVFVMIGK---KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSS 244 (258)
Q Consensus 168 g~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~ 244 (258)
|++++|..-|.+..+ .+...+|.|.-.+.-.|+.++|..++......+- -|...-..+.......|++++|..+..
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 888888877766543 3666777777777777888888888777665532 255556666666677788877776654
No 81
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.06 E-value=0.0002 Score=55.92 Aligned_cols=158 Identities=12% Similarity=0.072 Sum_probs=108.3
Q ss_pred hhhhhhhhhhhhccCCCChHHHHHHhccCCC--CC-h---hhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCc-chH
Q 038429 55 PYSASKLFTPCALSTFSSLEYARKMFDQIPQ--PN-L---YTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNE-FTL 127 (258)
Q Consensus 55 ~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~--~~-~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~ 127 (258)
...+-.+...+...| +++.|...|++..+ |+ . .++..+..++.+.|++++|+..++++.+...-.|.. .++
T Consensus 33 ~~~~~~~g~~~~~~~--~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 33 AEELYEEAKEALDSG--DYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 445566666777778 88888888886643 32 1 356777888888888889988888884333212221 133
Q ss_pred HHHHHHhcCc--------CCcchhhhhhhcc---cCch-hHH-----------------HHHHHHHHhcCCHHHHHHHHH
Q 038429 128 PFVIKAAARP--------VQFRVGQAIHGMF---EDDL-VIS-----------------NSLIHFYAVCGDLAMAYCVFV 178 (258)
Q Consensus 128 ~~ll~~~~~~--------~~~~~a~~~~~~~---~~~~-~~~-----------------~~li~~~~~~g~~~~a~~~~~ 178 (258)
..+-.++... |+.+.|...++.+ .|+. ..+ ..+...|.+.|++++|...|.
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~ 190 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFE 190 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 3333334332 6677788877777 3332 222 134566788999999999998
Q ss_pred hcCC--C----ChhhHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 038429 179 MIGK--K----DVVSWNSMISGFVEGGFFEKAIELYREMEVE 214 (258)
Q Consensus 179 ~m~~--~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 214 (258)
...+ | ....+..+..++...|+.++|..+++.+...
T Consensus 191 ~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 191 TVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 8754 3 2457889999999999999999999888764
No 82
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.01 E-value=0.00059 Score=56.62 Aligned_cols=84 Identities=13% Similarity=0.183 Sum_probs=46.9
Q ss_pred HHHHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CCh--hhHHHHHHHHHc
Q 038429 129 FVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK-----KDV--VSWNSMISGFVE 197 (258)
Q Consensus 129 ~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~--~~~~~li~~~~~ 197 (258)
.+...+...|++++|...++.. +.+...+..+-..|...|++++|...++...+ ++. ..|-.+...+..
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~ 198 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE 198 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH
Confidence 3344555666666666666655 34445555666666666666666666655433 111 123345555666
Q ss_pred CCChHHHHHHHHHHH
Q 038429 198 GGFFEKAIELYREME 212 (258)
Q Consensus 198 ~g~~~~a~~~~~~m~ 212 (258)
.|++++|..++++..
T Consensus 199 ~G~~~~A~~~~~~~~ 213 (355)
T cd05804 199 RGDYEAALAIYDTHI 213 (355)
T ss_pred CCCHHHHHHHHHHHh
Confidence 666666666666653
No 83
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.99 E-value=9.2e-05 Score=61.74 Aligned_cols=119 Identities=12% Similarity=0.126 Sum_probs=96.8
Q ss_pred hhhhhhhhccCCCChHHHHHHhccCCCCChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcC
Q 038429 59 SKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPV 138 (258)
Q Consensus 59 ~~li~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~ 138 (258)
..|+..+...+ +++.|..+|+++.+.++.....+++.+...++..+|++++++..++. +-+...+..-...|.+.+
T Consensus 173 ~~Ll~~l~~t~--~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~--p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 173 DTLLKYLSLTQ--RYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN--PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHhhcc--cHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcC
Confidence 34556666667 99999999999988777777789999999999999999999884322 234555566667788999
Q ss_pred Ccchhhhhhhcc----cCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 038429 139 QFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIG 181 (258)
Q Consensus 139 ~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 181 (258)
+.+.|..+.+.. +.+-.+|..|..+|.+.|+++.|+-.++.+.
T Consensus 249 ~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 249 KYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999999988 4455599999999999999999999998876
No 84
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.96 E-value=0.00099 Score=60.09 Aligned_cols=207 Identities=11% Similarity=0.070 Sum_probs=146.2
Q ss_pred hhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCCC------ChhhHHHHHHHHhcCCChhhHHH
Q 038429 36 QKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQP------NLYTWNTLIRAYSSSDEPIQSFM 109 (258)
Q Consensus 36 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~~------~~~~~~~li~~~~~~g~~~~a~~ 109 (258)
.+.+.+++...-..+ .-++.+.+.|.+.|...| +++.+..+...+..- -..+|-.+.++|-..|++++|..
T Consensus 252 ~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~--dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~ 328 (1018)
T KOG2002|consen 252 YKKGVQLLQRAYKEN-NENPVALNHLANHFYFKK--DYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFK 328 (1018)
T ss_pred HHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcc--cHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 444444444444444 457788888999999988 999998888777542 24568889999999999999999
Q ss_pred HHHHhHhcCCCCCCcch--HHHHHHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhcC----CHHHHHHHHHh
Q 038429 110 IFLQLVYNSPYFPNEFT--LPFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCG----DLAMAYCVFVM 179 (258)
Q Consensus 110 ~~~~m~~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g----~~~~a~~~~~~ 179 (258)
.|.+. .+. -|+..+ +--+...+.+.|+++.+...|+.+ +.+..+-..|-..|...+ ..++|..++..
T Consensus 329 yY~~s-~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K 405 (1018)
T KOG2002|consen 329 YYMES-LKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGK 405 (1018)
T ss_pred HHHHH-Hcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHH
Confidence 99776 333 344433 446777889999999999999988 444456666666666664 56778888877
Q ss_pred cCCC---ChhhHHHHHHHHHcCCChHHHHHHHHH----HHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHc
Q 038429 180 IGKK---DVVSWNSMISGFVEGGFFEKAIELYRE----MEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249 (258)
Q Consensus 180 m~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~----m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 249 (258)
..++ |...|-.+-..+-. ++...++.+|.. |...+-.+.....|.+-......|++++|...|......
T Consensus 406 ~~~~~~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~ 481 (1018)
T KOG2002|consen 406 VLEQTPVDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGK 481 (1018)
T ss_pred HHhcccccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhh
Confidence 7665 44455555454444 444444665544 344454567788899999999999999999999987644
No 85
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.95 E-value=0.0004 Score=62.34 Aligned_cols=138 Identities=9% Similarity=0.094 Sum_probs=89.7
Q ss_pred CChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCC-cchHHHHHHHhcCcCCcchhhhhhhcc----cCchhHHHHH
Q 038429 86 PNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPN-EFTLPFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSL 160 (258)
Q Consensus 86 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~l 160 (258)
.++..+-.|.....+.|..++|+.+++.. .+ ..|+ ......+...+.+.+++++|....+.. +.+....+.+
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~-~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~ 160 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGI-HQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLE 160 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHH-Hh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 34666777777777777777777777766 22 2344 345566677777777777777766666 4444566666
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHH
Q 038429 161 IHFYAVCGDLAMAYCVFVMIGKK---DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVL 227 (258)
Q Consensus 161 i~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li 227 (258)
-.++.+.|++++|..+|++...+ +..++..+-.++-..|+.++|...|++..+. ..|....|+..+
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~ 229 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRL 229 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHH
Confidence 67777777777777777766543 2456666667777777777777777776554 234445554443
No 86
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.93 E-value=6.5e-05 Score=63.00 Aligned_cols=115 Identities=7% Similarity=0.062 Sum_probs=94.0
Q ss_pred ccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC------CChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCC
Q 038429 50 DFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ------PNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPN 123 (258)
Q Consensus 50 ~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~ 123 (258)
+...+......+++.+.... +++.+..++-.... .-..|..++|+.|.+.|..++++.+++.= ...|+-||
T Consensus 61 ~~~vS~~dld~fvn~~~~~~--~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~-~~yGiF~D 137 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKD--DLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNR-LQYGIFPD 137 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHh--HHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhCh-hhcccCCC
Confidence 55667778888888888888 88888888766543 22345679999999999999999999998 89999999
Q ss_pred cchHHHHHHHhcCcCCcchhhhhhhcc-----cCchhHHHHHHHHHHhc
Q 038429 124 EFTLPFVIKAAARPVQFRVGQAIHGMF-----EDDLVISNSLIHFYAVC 167 (258)
Q Consensus 124 ~~~~~~ll~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~li~~~~~~ 167 (258)
..+++.|++.+.+.|++..|.++...| ..+..|+..-+.+|.+.
T Consensus 138 ~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 138 NFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999999998888 44445666556666655
No 87
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.91 E-value=8.1e-05 Score=53.48 Aligned_cols=61 Identities=8% Similarity=-0.144 Sum_probs=31.4
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHH
Q 038429 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGK--K-DVVSWNSMISGFVEGGFFEKAIELYREMEV 213 (258)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 213 (258)
+...|..+-.++.+.|++++|...|+.... | +...+..+-.++...|+.++|...|++..+
T Consensus 57 ~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 57 SWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIK 120 (144)
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334444555555555555555555554433 2 444555555555555555555555555444
No 88
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.90 E-value=6.2e-05 Score=62.79 Aligned_cols=185 Identities=12% Similarity=0.018 Sum_probs=140.8
Q ss_pred cCCCccCcccccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC---CChhhHHHHHHHHh
Q 038429 23 NNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ---PNLYTWNTLIRAYS 99 (258)
Q Consensus 23 ~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~ 99 (258)
++.....+....+.+..+..|+...+.+ +-++.+|..--....-.+ ++++|..=|++... .+...|-.+-.+.-
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~--q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Y 439 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQ--QYEEAIADFQKAISLDPENAYAYIQLCCALY 439 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHH--HHHHHHHHHHHHhhcChhhhHHHHHHHHHHH
Confidence 4444457777888999999999999887 446667765555555556 88999988887765 35566777777777
Q ss_pred cCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc---cCc---------hhHHHHHHHHHHhc
Q 038429 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF---EDD---------LVISNSLIHFYAVC 167 (258)
Q Consensus 100 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~---~~~---------~~~~~~li~~~~~~ 167 (258)
+.++++++...|++. +++ ++-.+..|+.....+...++++.|...|+.. +|+ ..+.-.++-.- -.
T Consensus 440 r~~k~~~~m~~Fee~-kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk 516 (606)
T KOG0547|consen 440 RQHKIAESMKTFEEA-KKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ-WK 516 (606)
T ss_pred HHHHHHHHHHHHHHH-HHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc-hh
Confidence 889999999999998 443 5556788999999999999999999998887 333 11222222222 34
Q ss_pred CCHHHHHHHHHhcCCC---ChhhHHHHHHHHHcCCChHHHHHHHHHHHH
Q 038429 168 GDLAMAYCVFVMIGKK---DVVSWNSMISGFVEGGFFEKAIELYREMEV 213 (258)
Q Consensus 168 g~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 213 (258)
+++..|.+++....+- ....|-.|-..-...|++++|+++|++-..
T Consensus 517 ~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 517 EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 8999999999987764 556889999999999999999999998654
No 89
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=97.88 E-value=0.00069 Score=60.51 Aligned_cols=183 Identities=11% Similarity=0.057 Sum_probs=142.5
Q ss_pred cCCCChHHHHHHhccCCC---CChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhh
Q 038429 68 STFSSLEYARKMFDQIPQ---PNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQ 144 (258)
Q Consensus 68 ~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 144 (258)
.| ++++|.+++.+..+ .+...|.+|-..|-+.|+.++++..+-.. ..-.+-|..-|..+-....+.|+++.|.
T Consensus 152 rg--~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llA--AHL~p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 152 RG--DLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLA--AHLNPKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred hC--CHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHH--HhcCCCChHHHHHHHHHHHhcccHHHHH
Confidence 38 99999999998865 57788999999999999999998877444 2223445677888888899999999999
Q ss_pred hhhhcc----cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C--Chh----hHHHHHHHHHcCCChHHHHHHHHHHH
Q 038429 145 AIHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK--K--DVV----SWNSMISGFVEGGFFEKAIELYREME 212 (258)
Q Consensus 145 ~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~--~~~----~~~~li~~~~~~g~~~~a~~~~~~m~ 212 (258)
-+|... +++...+---+..|-+.|+...|.+-|.++-+ | |.. +--.+++.+...++-+.|.+.++.-.
T Consensus 228 ~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~ 307 (895)
T KOG2076|consen 228 YCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL 307 (895)
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999888 66766777788999999999999999988765 3 222 23344566677777788888887766
Q ss_pred Hc-CCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHcCCccc
Q 038429 213 VE-NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254 (258)
Q Consensus 213 ~~-~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 254 (258)
.. +-..+...++.+...+.+...++.|......+.....++|
T Consensus 308 s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d 350 (895)
T KOG2076|consen 308 SKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKD 350 (895)
T ss_pred hhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCC
Confidence 53 3345667888999999999999999998888876433333
No 90
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.87 E-value=0.00013 Score=63.55 Aligned_cols=180 Identities=9% Similarity=-0.066 Sum_probs=105.7
Q ss_pred hhhhhhhhhhccCCCChHHHHHHhccCC--CCChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHh
Q 038429 57 SASKLFTPCALSTFSSLEYARKMFDQIP--QPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAA 134 (258)
Q Consensus 57 ~~~~li~~~~~~~~~~~~~a~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~ 134 (258)
.|.-+|.+|...| +..+|..+..+-. .|+...|..+.+......-+++|.++.+.. ..+ +-..+-...
T Consensus 426 mw~~vi~CY~~lg--~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yEkawElsn~~-sar-------A~r~~~~~~ 495 (777)
T KOG1128|consen 426 MWDPVILCYLLLG--QHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYEKAWELSNYI-SAR-------AQRSLALLI 495 (777)
T ss_pred HHHHHHHHHHHhc--ccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHHHHHHHhhhh-hHH-------HHHhhcccc
Confidence 3455566666666 6666655554332 255566666666655555566666666544 111 000111111
Q ss_pred cCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHcCCChHHHHHH
Q 038429 135 ARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK--K-DVVSWNSMISGFVEGGFFEKAIEL 207 (258)
Q Consensus 135 ~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~ 207 (258)
.+.++++++.+.++.- +.-..+|-.+-.+..+.++++.|.+.|..... | +...||.+-.+|.+.|+-.+|...
T Consensus 496 ~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~ 575 (777)
T KOG1128|consen 496 LSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRK 575 (777)
T ss_pred ccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHH
Confidence 2245555555555544 44555666666666777777777777766543 5 445788888888888888888877
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHH
Q 038429 208 YREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIE 247 (258)
Q Consensus 208 ~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 247 (258)
+.+..+-+.. +...|...+-...+.|.++.|.+.+.++.
T Consensus 576 l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 576 LKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 7777665532 33444444555567777887777777664
No 91
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.86 E-value=0.00033 Score=53.14 Aligned_cols=120 Identities=9% Similarity=0.006 Sum_probs=75.9
Q ss_pred CCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHHH-HhcCC--HHHH
Q 038429 101 SDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFY-AVCGD--LAMA 173 (258)
Q Consensus 101 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~-~~~g~--~~~a 173 (258)
.++.++++..++...+.. +.|...|..+-..|...|+++.|...++.. +.+...+..+-.++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~--P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 444555555555542221 345556666667777777777777776666 44556666666653 55566 4778
Q ss_pred HHHHHhcCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhH
Q 038429 174 YCVFVMIGK--K-DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTM 223 (258)
Q Consensus 174 ~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~ 223 (258)
.+++++..+ | +...+..+-..+...|++++|...|+++.+. .+|+..-+
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l-~~~~~~r~ 181 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDL-NSPRVNRT 181 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCccHH
Confidence 888877654 3 5567777777777888888888888887665 23444333
No 92
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.85 E-value=0.00038 Score=49.97 Aligned_cols=93 Identities=9% Similarity=-0.095 Sum_probs=79.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhc
Q 038429 156 ISNSLIHFYAVCGDLAMAYCVFVMIGK--K-DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAK 232 (258)
Q Consensus 156 ~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~ 232 (258)
.+..+-..+...|++++|...|..... | +...|..+-..+...|++++|...|++..... +.+...+..+..++.+
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 355677888899999999999997754 3 77788899999999999999999999998753 2366788999999999
Q ss_pred cCChhHHHHHHHHHHHc
Q 038429 233 KRDLEFGIWVSSHIEKN 249 (258)
Q Consensus 233 ~g~~~~a~~~~~~m~~~ 249 (258)
.|++++|...++...+.
T Consensus 105 ~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 105 MGEPGLAREAFQTAIKM 121 (144)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 99999999999998765
No 93
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=0.00081 Score=57.23 Aligned_cols=195 Identities=14% Similarity=0.016 Sum_probs=144.0
Q ss_pred CcccccchhhHHHHHHHHHhhccCcc-hhhhhhhhhhhhccCCCChHHHHHHhccCCC---CChhhHHHHHHHHhcCCCh
Q 038429 29 HPHFLTNQKQLKRIHAQMLSTDFFFD-PYSASKLFTPCALSTFSSLEYARKMFDQIPQ---PNLYTWNTLIRAYSSSDEP 104 (258)
Q Consensus 29 ~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~ 104 (258)
.+-..+..++|.+.|....... |+ ...|-..-+.|+-.+ ..+.|...+....+ ...-.+--+---|.+.++.
T Consensus 321 YYl~i~k~seARry~SKat~lD--~~fgpaWl~fghsfa~e~--EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLD--PTFGPAWLAFGHSFAGEG--EHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNL 396 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcC--ccccHHHHHHhHHhhhcc--hHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccH
Confidence 4555688999999999776543 32 235777777888777 87777766643322 1111112244457778899
Q ss_pred hhHHHHHHHhHhcCCCCC-CcchHHHHHHHhcCcCCcchhhhhhhcc----------c-CchhHHHHHHHHHHhcCCHHH
Q 038429 105 IQSFMIFLQLVYNSPYFP-NEFTLPFVIKAAARPVQFRVGQAIHGMF----------E-DDLVISNSLIHFYAVCGDLAM 172 (258)
Q Consensus 105 ~~a~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~----------~-~~~~~~~~li~~~~~~g~~~~ 172 (258)
+-|.+.|.+. . ++-| |+..++-+--..-..+.+.+|...|+.. . .-..+++.|-++|.+.+++++
T Consensus 397 kLAe~Ff~~A-~--ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~e 473 (611)
T KOG1173|consen 397 KLAEKFFKQA-L--AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEE 473 (611)
T ss_pred HHHHHHHHHH-H--hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHH
Confidence 9999999776 2 3444 5667777766667788899998888877 1 144579999999999999999
Q ss_pred HHHHHHhcC---CCChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhc
Q 038429 173 AYCVFVMIG---KKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAK 232 (258)
Q Consensus 173 a~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~ 232 (258)
|+..|+... ..|..+|.++--.|...|+++.|.+.|++-.. +.||..+...++..+..
T Consensus 474 AI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 474 AIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHHH
Confidence 999998653 35889999999999999999999999998654 78999888888776543
No 94
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.82 E-value=0.00026 Score=59.10 Aligned_cols=116 Identities=12% Similarity=0.110 Sum_probs=88.7
Q ss_pred HHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHHHHh
Q 038429 91 WNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAV 166 (258)
Q Consensus 91 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~ 166 (258)
-..|++.+...++++.|+.+|+++ .+.. |+ ....+...+...++..+|.++.+.. +.|....+.-...+.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L-~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKL-RERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHH-HhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 445666777788899999999998 5443 43 4556777777777777777776666 4466666667777888
Q ss_pred cCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHH
Q 038429 167 CGDLAMAYCVFVMIGK--K-DVVSWNSMISGFVEGGFFEKAIELYREM 211 (258)
Q Consensus 167 ~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m 211 (258)
.++.+.|.++.+++.+ | +..+|..|..+|...|+++.|+..++.+
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 9999999999988875 5 5568999999999999999998887765
No 95
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.81 E-value=0.00021 Score=59.99 Aligned_cols=114 Identities=14% Similarity=0.112 Sum_probs=74.8
Q ss_pred CCCCcchHHHHHHHhcCcCCcchhhhhhhcc-------cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CChhhH
Q 038429 120 YFPNEFTLPFVIKAAARPVQFRVGQAIHGMF-------EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK----KDVVSW 188 (258)
Q Consensus 120 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~~~ 188 (258)
.+.+...+..+++.+....+++.++.++... ..-..|..++|+.|.+.|..+++..+++.=.+ ||..||
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3445556666666666666666666665555 11223445777777777777777777765444 677777
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhcc
Q 038429 189 NSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKK 233 (258)
Q Consensus 189 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~ 233 (258)
|.|+..+.+.|++..|.++...|...+.-.+..|+...+.+|.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 777777777777777777777776666556666666666666554
No 96
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.80 E-value=0.00089 Score=60.21 Aligned_cols=133 Identities=8% Similarity=-0.108 Sum_probs=72.0
Q ss_pred hhhhhhhhhhhhccCCCChHHHHHHhccCCC---CChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCC-cchHHHH
Q 038429 55 PYSASKLFTPCALSTFSSLEYARKMFDQIPQ---PNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPN-EFTLPFV 130 (258)
Q Consensus 55 ~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l 130 (258)
+..+-.|.......| ..++|..+++...+ .+......+...+.+.+++++|+..+++. ... .|+ ......+
T Consensus 86 ~~~~~~La~i~~~~g--~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~-l~~--~p~~~~~~~~~ 160 (694)
T PRK15179 86 ELFQVLVARALEAAH--RSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELY-FSG--GSSSAREILLE 160 (694)
T ss_pred HHHHHHHHHHHHHcC--CcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHH-hhc--CCCCHHHHHHH
Confidence 444555555555555 66666666655543 23445555666666666666666666555 222 233 3334455
Q ss_pred HHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHH
Q 038429 131 IKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK---KDVVSWNSMI 192 (258)
Q Consensus 131 l~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~li 192 (258)
-.++.+.|++++|..+|+.. +.+...+..+-+.+.+.|+.++|...|+...+ +....||.++
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 55566666666666666666 22345566666666666666666666655432 3444444443
No 97
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.80 E-value=0.0008 Score=51.91 Aligned_cols=148 Identities=11% Similarity=-0.021 Sum_probs=117.0
Q ss_pred hhhhhhhhccCCCChHHHHHHhccCCC---CChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhc
Q 038429 59 SKLFTPCALSTFSSLEYARKMFDQIPQ---PNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135 (258)
Q Consensus 59 ~~li~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~ 135 (258)
..+-..+...| +-+....+...... .+...-+..+....+.|++.+|+..|.+. .. .-++|..+|+.+--+|-
T Consensus 70 ~~~a~a~~~~G--~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA-~~-l~p~d~~~~~~lgaald 145 (257)
T COG5010 70 AKLATALYLRG--DADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKA-AR-LAPTDWEAWNLLGAALD 145 (257)
T ss_pred HHHHHHHHhcc--cccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHH-hc-cCCCChhhhhHHHHHHH
Confidence 44555555556 66666555554322 34445666899999999999999999988 33 34788999999999999
Q ss_pred CcCCcchhhhhhhcc----cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHcCCChHHHHHHH
Q 038429 136 RPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK--K-DVVSWNSMISGFVEGGFFEKAIELY 208 (258)
Q Consensus 136 ~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~ 208 (258)
+.|+++.|..-|... +-+....|.|.-.|.-.|+.+.|..++..... + |...-..|.-.....|++++|..+.
T Consensus 146 q~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 146 QLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred HccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 999999999888777 66778899999999999999999999976643 2 7778888888899999999998876
Q ss_pred HH
Q 038429 209 RE 210 (258)
Q Consensus 209 ~~ 210 (258)
..
T Consensus 226 ~~ 227 (257)
T COG5010 226 VQ 227 (257)
T ss_pred cc
Confidence 44
No 98
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.77 E-value=0.00067 Score=56.74 Aligned_cols=110 Identities=10% Similarity=0.027 Sum_probs=48.3
Q ss_pred HhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc---cCc-hhHHHHHHHHHHhcCCHHHH
Q 038429 98 YSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF---EDD-LVISNSLIHFYAVCGDLAMA 173 (258)
Q Consensus 98 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~---~~~-~~~~~~li~~~~~~g~~~~a 173 (258)
+-+.|+.++|+..++.+.+ . .+-|+.-+......+.+.++..+|.+.++.+ .|+ ...+-.+-.+|.+.|++.+|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~-~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIA-A-QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHH-h-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHH
Confidence 3344445555555554421 1 1112222233334444555555555544444 222 33444444555555555555
Q ss_pred HHHHHhcCC--C-ChhhHHHHHHHHHcCCChHHHHHHHH
Q 038429 174 YCVFVMIGK--K-DVVSWNSMISGFVEGGFFEKAIELYR 209 (258)
Q Consensus 174 ~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~ 209 (258)
.++++.... | |...|..|-.+|...|+..++..-..
T Consensus 394 i~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~A 432 (484)
T COG4783 394 IRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARA 432 (484)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHH
Confidence 555544332 1 44455555555555444444444333
No 99
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.76 E-value=0.0013 Score=56.12 Aligned_cols=212 Identities=15% Similarity=0.063 Sum_probs=154.4
Q ss_pred CcccccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC---CChhhHHHHHHHHhcCCChh
Q 038429 29 HPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ---PNLYTWNTLIRAYSSSDEPI 105 (258)
Q Consensus 29 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~ 105 (258)
.+-+.|++..|.-.|+..++.. +-+...|..|-..-.... +-..|+..+.+..+ .|..+.-+|...|...|.-.
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE--~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENE--NEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhcc--chHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHH
Confidence 3445677899988999888887 446778888877777776 76777777766544 57788888999999999999
Q ss_pred hHHHHHHHhHhcC---C-CCC---CcchHHHHHHHhcCcCCcchhhhhhhcc------cCchhHHHHHHHHHHhcCCHHH
Q 038429 106 QSFMIFLQLVYNS---P-YFP---NEFTLPFVIKAAARPVQFRVGQAIHGMF------EDDLVISNSLIHFYAVCGDLAM 172 (258)
Q Consensus 106 ~a~~~~~~m~~~~---~-~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~------~~~~~~~~~li~~~~~~g~~~~ 172 (258)
+|+..++.=.+.. . ..+ +...-.. ..+.....+.+..++|-.+ .+|..+++.|--.|--.|++++
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 9999887752221 0 000 1100000 2222233334445555444 3788888999888999999999
Q ss_pred HHHHHHhcCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHhccCChhHHHHHHHHHH
Q 038429 173 AYCVFVMIGK--K-DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDE-VTMVVVLSACAKKRDLEFGIWVSSHIE 247 (258)
Q Consensus 173 a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~t~~~li~~~~~~g~~~~a~~~~~~m~ 247 (258)
|.+.|+...+ | |-..||-|-..++...+-++|+..|++..+ ++|+. +..--|--+|...|.+++|...|-...
T Consensus 449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 9999997754 5 778999999999999999999999999877 56764 455566667899999999998887543
No 100
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.76 E-value=0.00087 Score=50.87 Aligned_cols=142 Identities=10% Similarity=0.016 Sum_probs=102.1
Q ss_pred HHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhcCCH
Q 038429 95 IRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDL 170 (258)
Q Consensus 95 i~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~ 170 (258)
+-.|...|+++.+..-.+.+ .. |. . .+...++.+++...++.. +.+...|..+-..|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~-~~----~~-~-------~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRL-AD----PL-H-------QFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHH-hC----cc-c-------cccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCH
Confidence 44677788877764443332 11 11 0 111234444444444444 77888999999999999999
Q ss_pred HHHHHHHHhcCC--C-ChhhHHHHHHHH-HcCCC--hHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHH
Q 038429 171 AMAYCVFVMIGK--K-DVVSWNSMISGF-VEGGF--FEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSS 244 (258)
Q Consensus 171 ~~a~~~~~~m~~--~-~~~~~~~li~~~-~~~g~--~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~ 244 (258)
++|...|+...+ | +...+..+-.++ ...|+ .++|..++++..+..- -+...+..+-..+.+.|++++|...|+
T Consensus 90 ~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP-~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 90 DNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDA-NEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC-CChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999997765 4 667777777764 67677 5999999999988642 255778888889999999999999999
Q ss_pred HHHHcC
Q 038429 245 HIEKNG 250 (258)
Q Consensus 245 ~m~~~g 250 (258)
.+.+..
T Consensus 169 ~aL~l~ 174 (198)
T PRK10370 169 KVLDLN 174 (198)
T ss_pred HHHhhC
Confidence 997654
No 101
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.73 E-value=0.00076 Score=50.88 Aligned_cols=114 Identities=13% Similarity=0.143 Sum_probs=75.2
Q ss_pred HHHHhccC--CCCChhhHHHHHHHHhcC-----CChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhh
Q 038429 76 ARKMFDQI--PQPNLYTWNTLIRAYSSS-----DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG 148 (258)
Q Consensus 76 a~~~~~~m--~~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 148 (258)
....|++. ...+-.+|..+|..|.+. |.++-....++.| .+.|+.-|..+|+.||+.+=+ |.+- -..+|+
T Consensus 33 ~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M-~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ 109 (228)
T PF06239_consen 33 HEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKM-DEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQ 109 (228)
T ss_pred hHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHH-HHcCCcccHHHHHHHHHhCCC-CCcc-cccHHH
Confidence 34455554 457888888888888754 6788888888999 999999999999999988876 3331 111111
Q ss_pred cccCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 038429 149 MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLS 228 (258)
Q Consensus 149 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~ 228 (258)
.+ .--|- .+.+-|++++++|...|+-||..|+..+++
T Consensus 110 ~~-----------------------------------------F~hyp--~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~ 146 (228)
T PF06239_consen 110 AE-----------------------------------------FMHYP--RQQECAIDLLEQMENNGVMPDKETEQMLLN 146 (228)
T ss_pred HH-----------------------------------------hccCc--HHHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 11 10111 234556777777777777777777777777
Q ss_pred HHhccCC
Q 038429 229 ACAKKRD 235 (258)
Q Consensus 229 ~~~~~g~ 235 (258)
.+.+.+.
T Consensus 147 iFG~~s~ 153 (228)
T PF06239_consen 147 IFGRKSH 153 (228)
T ss_pred HhccccH
Confidence 7755443
No 102
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.70 E-value=0.0025 Score=51.58 Aligned_cols=188 Identities=11% Similarity=0.089 Sum_probs=119.4
Q ss_pred hhhhhhhhhhhccCCCChHHHHHHhccCCCCChhhHHHHHHHHhcCCC-------hhhHHHHHHHhHhcCCCCCCcc-hH
Q 038429 56 YSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDE-------PIQSFMIFLQLVYNSPYFPNEF-TL 127 (258)
Q Consensus 56 ~~~~~li~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~-------~~~a~~~~~~m~~~~~~~p~~~-~~ 127 (258)
+.--.|+-.|.+.+ ++.+|..+.+++...++.-|-.---.++..|+ ..-|.+.|+-. -..+..-|+. --
T Consensus 286 EARlNL~iYyL~q~--dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlV-G~Sa~ecDTIpGR 362 (557)
T KOG3785|consen 286 EARLNLIIYYLNQN--DVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLV-GESALECDTIPGR 362 (557)
T ss_pred Hhhhhheeeecccc--cHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHh-cccccccccccch
Confidence 33445666777888 99999999888876555544433334444444 33444444433 4444433322 23
Q ss_pred HHHHHHhcCcCCcchhhhhhhcc-----cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhhHHHHH-HHHHcC
Q 038429 128 PFVIKAAARPVQFRVGQAIHGMF-----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKK---DVVSWNSMI-SGFVEG 198 (258)
Q Consensus 128 ~~ll~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~li-~~~~~~ 198 (258)
-++.+++--..+++++...+..+ ..|...+| +..+++..|.+.+|+++|-.+..| |..+|.+++ .+|.++
T Consensus 363 QsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~n 441 (557)
T KOG3785|consen 363 QSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRN 441 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhc
Confidence 34445555555666666555555 44444444 678888899999999999888775 667887665 677888
Q ss_pred CChHHHHHHHHHHHHcCCCCChhh-HHHHHHHHhccCChhHHHHHHHHHHHcC
Q 038429 199 GFFEKAIELYREMEVENVKPDEVT-MVVVLSACAKKRDLEFGIWVSSHIEKNG 250 (258)
Q Consensus 199 g~~~~a~~~~~~m~~~~~~p~~~t-~~~li~~~~~~g~~~~a~~~~~~m~~~g 250 (258)
++.+-|+.++-++. -..+..+ ...+.+-|-+.+++--|-+.|+++....
T Consensus 442 kkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lD 491 (557)
T KOG3785|consen 442 KKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKANEFYYAAKAFDELEILD 491 (557)
T ss_pred CCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccC
Confidence 88888877664443 2233444 3444566888899988888888887654
No 103
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.70 E-value=0.0013 Score=57.94 Aligned_cols=133 Identities=11% Similarity=-0.007 Sum_probs=86.3
Q ss_pred ccccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCCCChhhHHHHHHHHhcCCChhhHHHH
Q 038429 31 HFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMI 110 (258)
Q Consensus 31 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~ 110 (258)
..++.+..|..+.+.+...... ..-|..+...|+..| +++.|+++|.+.. .++.-|..|.+.|+|++|.++
T Consensus 743 i~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~--dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~kl 813 (1636)
T KOG3616|consen 743 IGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKG--DFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKL 813 (1636)
T ss_pred hhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccch--hHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHH
Confidence 3455666677776666544322 233667777788888 8888888876543 356677788888888888777
Q ss_pred HHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc-cCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 038429 111 FLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF-EDDLVISNSLIHFYAVCGDLAMAYCVFVMI 180 (258)
Q Consensus 111 ~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 180 (258)
-++. .|.......|-.-..-+-+.|++.+|++++-.+ .|+. .|.+|-+.|..++..++.++-
T Consensus 814 a~e~---~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 814 AEEC---HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred HHHh---cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHh
Confidence 6544 232333444555555566777788888877777 6654 356777777777777766543
No 104
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.70 E-value=0.00047 Score=60.62 Aligned_cols=156 Identities=13% Similarity=0.084 Sum_probs=103.6
Q ss_pred ChHHHHHHhccCCCCChh--hHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhc
Q 038429 72 SLEYARKMFDQIPQPNLY--TWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM 149 (258)
Q Consensus 72 ~~~~a~~~~~~m~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 149 (258)
.+.+|..+++.+...++. -|-.+...|+..|+++.|.++|-+- ..++-.|..|.+.|+|..|.++-..
T Consensus 747 ew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~----------~~~~dai~my~k~~kw~da~kla~e 816 (1636)
T KOG3616|consen 747 EWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA----------DLFKDAIDMYGKAGKWEDAFKLAEE 816 (1636)
T ss_pred hhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc----------chhHHHHHHHhccccHHHHHHHHHH
Confidence 666667777666544333 3667777788888888888877544 1355667788888888888877766
Q ss_pred c---cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHH
Q 038429 150 F---EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVV 226 (258)
Q Consensus 150 ~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~l 226 (258)
. +..+..|-+-..-+-+.|++.+|++++-....|+. .|..|-+.|..++.+++.++-.-.. -..|..++
T Consensus 817 ~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~h~d~---l~dt~~~f 888 (1636)
T KOG3616|consen 817 CHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHHGDH---LHDTHKHF 888 (1636)
T ss_pred hcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHhChhh---hhHHHHHH
Confidence 6 34445566666666778888888888887777764 4667777787777777765532111 12455566
Q ss_pred HHHHhccCChhHHHHHHHH
Q 038429 227 LSACAKKRDLEFGIWVSSH 245 (258)
Q Consensus 227 i~~~~~~g~~~~a~~~~~~ 245 (258)
-.-+-..|++..|.+-|-+
T Consensus 889 ~~e~e~~g~lkaae~~fle 907 (1636)
T KOG3616|consen 889 AKELEAEGDLKAAEEHFLE 907 (1636)
T ss_pred HHHHHhccChhHHHHHHHh
Confidence 6666666777766665544
No 105
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=0.0019 Score=53.22 Aligned_cols=195 Identities=10% Similarity=-0.049 Sum_probs=126.7
Q ss_pred hhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCCCChhh---HHHHHHHHhcCCCh--------------------
Q 038429 48 STDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYT---WNTLIRAYSSSDEP-------------------- 104 (258)
Q Consensus 48 ~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~li~~~~~~g~~-------------------- 104 (258)
..-++.+......+..++...| +.+.|...|++....|+.+ ...-.-.+.+.|+.
T Consensus 225 ~~~lr~NvhLl~~lak~~~~~G--dn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~ 302 (564)
T KOG1174|consen 225 NTTLRCNEHLMMALGKCLYYNG--DYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASH 302 (564)
T ss_pred hccCCccHHHHHHHhhhhhhhc--CchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhh
Confidence 3445667777888999999999 9999999998765422221 11111122333333
Q ss_pred --------------hhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHHHHh
Q 038429 105 --------------IQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAV 166 (258)
Q Consensus 105 --------------~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~ 166 (258)
+.|+.+-+.- .+.+ +-+...|-.--+.+...+++++|.--|... +.+..+|..|+++|..
T Consensus 303 wfV~~~~l~~~K~~~rAL~~~eK~-I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA 380 (564)
T KOG1174|consen 303 WFVHAQLLYDEKKFERALNFVEKC-IDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLA 380 (564)
T ss_pred hhhhhhhhhhhhhHHHHHHHHHHH-hccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHh
Confidence 3333333332 1100 112223333334566677788877777766 6788899999999999
Q ss_pred cCCHHHHHHHHH----hcC----------------------------------CC-ChhhHHHHHHHHHcCCChHHHHHH
Q 038429 167 CGDLAMAYCVFV----MIG----------------------------------KK-DVVSWNSMISGFVEGGFFEKAIEL 207 (258)
Q Consensus 167 ~g~~~~a~~~~~----~m~----------------------------------~~-~~~~~~~li~~~~~~g~~~~a~~~ 207 (258)
.|++.+|.-.-+ .|. +| -....+.+.+.+..-|..++++.+
T Consensus 381 ~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~L 460 (564)
T KOG1174|consen 381 QKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKL 460 (564)
T ss_pred hchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHH
Confidence 999888765432 232 12 123455666778888899999999
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHH
Q 038429 208 YREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEK 248 (258)
Q Consensus 208 ~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 248 (258)
+++-.. ..||....+.|-+.+...+.+++|.+.|....+
T Consensus 461 Le~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 461 LEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 988665 468999999999999999999999888876543
No 106
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.69 E-value=0.00063 Score=48.03 Aligned_cols=85 Identities=7% Similarity=-0.029 Sum_probs=37.3
Q ss_pred HHHHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHcCCCh
Q 038429 129 FVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK--K-DVVSWNSMISGFVEGGFF 201 (258)
Q Consensus 129 ~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~ 201 (258)
.+...+...|++++|...++.. +.+...|..+...|.+.|++++|...|+...+ | +..++..+-..+...|++
T Consensus 22 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~ 101 (135)
T TIGR02552 22 ALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEP 101 (135)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCH
Confidence 3334444444444444444444 22334444444444444444444444443322 1 233333344444444444
Q ss_pred HHHHHHHHHHHH
Q 038429 202 EKAIELYREMEV 213 (258)
Q Consensus 202 ~~a~~~~~~m~~ 213 (258)
++|...|++..+
T Consensus 102 ~~A~~~~~~al~ 113 (135)
T TIGR02552 102 ESALKALDLAIE 113 (135)
T ss_pred HHHHHHHHHHHH
Confidence 444444444433
No 107
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.68 E-value=0.0006 Score=45.79 Aligned_cols=77 Identities=14% Similarity=0.242 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC-----CChhhHHHHHHHHHcCC--------ChHHHHHHHHHHHHcCCCCChhh
Q 038429 156 ISNSLIHFYAVCGDLAMAYCVFVMIGK-----KDVVSWNSMISGFVEGG--------FFEKAIELYREMEVENVKPDEVT 222 (258)
Q Consensus 156 ~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~li~~~~~~g--------~~~~a~~~~~~m~~~~~~p~~~t 222 (258)
|-...|..+...+++...-.+|+..++ |++.+||.++.+.++.. ++-..+.++..|...+++|+..|
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 344556667777899998888887764 78889999998887754 24466789999999999999999
Q ss_pred HHHHHHHHhc
Q 038429 223 MVVVLSACAK 232 (258)
Q Consensus 223 ~~~li~~~~~ 232 (258)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999998865
No 108
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.64 E-value=0.00051 Score=48.49 Aligned_cols=95 Identities=13% Similarity=0.031 Sum_probs=62.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 038429 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGK--K-DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230 (258)
Q Consensus 154 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~ 230 (258)
......+...+...|++++|.+.|+...+ | +...|..+-..+...|++++|..+++.....+ +.+...+..+-..+
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~ 95 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 34455566667777777777777766533 3 55566666677777777777777777665543 23445566666677
Q ss_pred hccCChhHHHHHHHHHHHc
Q 038429 231 AKKRDLEFGIWVSSHIEKN 249 (258)
Q Consensus 231 ~~~g~~~~a~~~~~~m~~~ 249 (258)
...|++++|...++...+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 96 LALGEPESALKALDLAIEI 114 (135)
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 7777777777777766654
No 109
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.63 E-value=0.011 Score=51.78 Aligned_cols=211 Identities=11% Similarity=0.021 Sum_probs=127.4
Q ss_pred ccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCC--CCChhhHHHHHHHHhcCCChhhHHHH
Q 038429 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIP--QPNLYTWNTLIRAYSSSDEPIQSFMI 110 (258)
Q Consensus 33 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~a~~~ 110 (258)
.|+...|..++.+..+.+ +.+...|-.-+..-.... .++.|..+|.+.. .++...|..=++.-.-.+..++|+++
T Consensus 597 agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~--e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rl 673 (913)
T KOG0495|consen 597 AGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFEND--ELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRL 673 (913)
T ss_pred cCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccc--cHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHH
Confidence 466677777777666665 335666666666666666 7777777776553 26666666666666666667777777
Q ss_pred HHHhHhcCCCCCC-cchHHHHHHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhcCCHHHHHHHHHhcC--CC
Q 038429 111 FLQLVYNSPYFPN-EFTLPFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIG--KK 183 (258)
Q Consensus 111 ~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~ 183 (258)
+++-.+.. |+ ...|-.+-..+-+.++++.|...|..- +-.+..|-.|.+.=-+.|.+-+|..+|+.-+ .|
T Consensus 674 lEe~lk~f---p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNP 750 (913)
T KOG0495|consen 674 LEEALKSF---PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNP 750 (913)
T ss_pred HHHHHHhC---CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCC
Confidence 76653322 33 223444444444555555555444433 4455566666666667777777777776543 44
Q ss_pred -ChhhHHHHHHHHHcCCChHHHHHHHHHHHHc-----------------------------CCCCChhhHHHHHHHHhcc
Q 038429 184 -DVVSWNSMISGFVEGGFFEKAIELYREMEVE-----------------------------NVKPDEVTMVVVLSACAKK 233 (258)
Q Consensus 184 -~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----------------------------~~~p~~~t~~~li~~~~~~ 233 (258)
|...|-..|..=.+.|+.+.|..+..+..+. .+.-|.+....+-..+-..
T Consensus 751 k~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e 830 (913)
T KOG0495|consen 751 KNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSE 830 (913)
T ss_pred CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHH
Confidence 5667777777777777777777666554331 1223445555555555566
Q ss_pred CChhHHHHHHHHHHHc
Q 038429 234 RDLEFGIWVSSHIEKN 249 (258)
Q Consensus 234 g~~~~a~~~~~~m~~~ 249 (258)
.++++|.+-|...++.
T Consensus 831 ~k~~kar~Wf~Ravk~ 846 (913)
T KOG0495|consen 831 KKIEKAREWFERAVKK 846 (913)
T ss_pred HHHHHHHHHHHHHHcc
Confidence 6677777777666544
No 110
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.63 E-value=0.0081 Score=49.02 Aligned_cols=108 Identities=13% Similarity=-0.009 Sum_probs=86.3
Q ss_pred CcchHHHHHHHhcCcCCcchhhhhhhcc-cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHcCCCh
Q 038429 123 NEFTLPFVIKAAARPVQFRVGQAIHGMF-EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFF 201 (258)
Q Consensus 123 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~ 201 (258)
...+.+..|.-+...|+...|..+.... -||..-|-..+.+|+..++|++-.++... +..+..|..++..|.+.|+.
T Consensus 176 ~~~Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s--kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 176 VGLSLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS--KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred hcCCHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC--CCCCCChHHHHHHHHHCCCH
Confidence 3456677778888888999999998888 78888999999999999999998887665 44668999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHH
Q 038429 202 EKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWV 242 (258)
Q Consensus 202 ~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~ 242 (258)
.+|..+..++ ++..-+..|.+.|++.+|.+.
T Consensus 254 ~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 254 KEASKYIPKI----------PDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHH
Confidence 9999888762 224446667777777777654
No 111
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.62 E-value=0.00074 Score=43.45 Aligned_cols=93 Identities=14% Similarity=0.069 Sum_probs=73.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhc
Q 038429 156 ISNSLIHFYAVCGDLAMAYCVFVMIGK--K-DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAK 232 (258)
Q Consensus 156 ~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~ 232 (258)
.+..+...+...|++++|.+.|....+ | +...+..+...+...|++++|...++...... +.+..++..+...+..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 355677788889999999999987654 3 44667778888888899999999999887753 2344678888888999
Q ss_pred cCChhHHHHHHHHHHHc
Q 038429 233 KRDLEFGIWVSSHIEKN 249 (258)
Q Consensus 233 ~g~~~~a~~~~~~m~~~ 249 (258)
.|+.+.|...+....+.
T Consensus 81 ~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 81 LGKYEEALEAYEKALEL 97 (100)
T ss_pred HHhHHHHHHHHHHHHcc
Confidence 99999999999887653
No 112
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.60 E-value=0.00033 Score=52.74 Aligned_cols=101 Identities=9% Similarity=0.112 Sum_probs=69.0
Q ss_pred hhHHHHHHHHHhhccCcchhhhhhhhhhhhccC---CCChHHHHHHhccCCC----CChhhHHHHHHHHhcC--------
Q 038429 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALST---FSSLEYARKMFDQIPQ----PNLYTWNTLIRAYSSS-------- 101 (258)
Q Consensus 37 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~---~~~~~~a~~~~~~m~~----~~~~~~~~li~~~~~~-------- 101 (258)
......|+.... -..+..+|..+|..|.+.. .|.++-....+..|.+ .|..+|+.|++.+-+.
T Consensus 31 ~~~~~~f~~~~~--~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~f 108 (228)
T PF06239_consen 31 APHEELFERAPG--QAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFF 108 (228)
T ss_pred cchHHHHHHHhh--ccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHH
Confidence 333444544432 2446667777777766441 2355555555555543 6777777777776653
Q ss_pred --------CChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCc
Q 038429 102 --------DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQF 140 (258)
Q Consensus 102 --------g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~ 140 (258)
.+.+-|++++++| ...|+.||..|+..+++.+++.+..
T Consensus 109 Q~~F~hyp~Qq~c~i~lL~qM-E~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 109 QAEFMHYPRQQECAIDLLEQM-ENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred HHHhccCcHHHHHHHHHHHHH-HHcCCCCcHHHHHHHHHHhccccHH
Confidence 2457889999999 9999999999999999999987753
No 113
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.59 E-value=0.0044 Score=52.06 Aligned_cols=144 Identities=16% Similarity=0.124 Sum_probs=109.1
Q ss_pred cccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC--CC-hhhHHHHHHHHhcCCChhhHH
Q 038429 32 FLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ--PN-LYTWNTLIRAYSSSDEPIQSF 108 (258)
Q Consensus 32 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~--~~-~~~~~~li~~~~~~g~~~~a~ 108 (258)
+.++..+|.++|+..+... ..+...|-.-+.+=.+.. .+.+|..+|++... |- -..|-.-+..=-..|++..|-
T Consensus 85 sq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk--~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNK--QVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred hHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhh--hHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHH
Confidence 3567788899999888776 446667777788778888 88899988886643 22 234555555555668888888
Q ss_pred HHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc---cCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 038429 109 MIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF---EDDLVISNSLIHFYAVCGDLAMAYCVFVMIG 181 (258)
Q Consensus 109 ~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 181 (258)
++|++= ....|+..+|.+.|+-=.+-..++.|..+++.. .|++..|--....=.++|.+..|..+|....
T Consensus 162 qiferW---~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAi 234 (677)
T KOG1915|consen 162 QIFERW---MEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAI 234 (677)
T ss_pred HHHHHH---HcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 888764 236788888988888888888888888888888 8888888887777778888888888776554
No 114
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.59 E-value=0.0024 Score=45.89 Aligned_cols=82 Identities=10% Similarity=0.035 Sum_probs=39.5
Q ss_pred HHHHhcCCHHHHHHHHHhcCC--CCh----hhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCC
Q 038429 162 HFYAVCGDLAMAYCVFVMIGK--KDV----VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRD 235 (258)
Q Consensus 162 ~~~~~~g~~~~a~~~~~~m~~--~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~ 235 (258)
..+...|++++|...|+.... ||. ...-.|...+...|++++|+..++...... .....+...-+.+.+.|+
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~ 133 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGD 133 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCC
Confidence 444555555555555554432 221 122233445555566666666554422211 122344455555666666
Q ss_pred hhHHHHHHHH
Q 038429 236 LEFGIWVSSH 245 (258)
Q Consensus 236 ~~~a~~~~~~ 245 (258)
.++|...|+.
T Consensus 134 ~~~A~~~y~~ 143 (145)
T PF09976_consen 134 YDEARAAYQK 143 (145)
T ss_pred HHHHHHHHHH
Confidence 6666665553
No 115
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.59 E-value=0.0091 Score=50.21 Aligned_cols=171 Identities=11% Similarity=-0.019 Sum_probs=121.7
Q ss_pred ChHHHHHHhccCCC------CChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhh
Q 038429 72 SLEYARKMFDQIPQ------PNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQA 145 (258)
Q Consensus 72 ~~~~a~~~~~~m~~------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 145 (258)
++.++...-++++. ++...+...+.+......-..+...+-.- .+. .-...-|..-+ .+-..|.++.|+.
T Consensus 252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~-~~~--~~~aa~YG~A~-~~~~~~~~d~A~~ 327 (484)
T COG4783 252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKR-SKR--GGLAAQYGRAL-QTYLAGQYDEALK 327 (484)
T ss_pred HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHH-hCc--cchHHHHHHHH-HHHHhcccchHHH
Confidence 56677767777764 56666777777666554433333333322 331 11122243333 3446788999999
Q ss_pred hhhcc----cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-hhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC
Q 038429 146 IHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK--KD-VVSWNSMISGFVEGGFFEKAIELYREMEVENVKP 218 (258)
Q Consensus 146 ~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 218 (258)
.+..+ +.|.+.+......+.+.++.++|.+.++.+.. |+ ....-.+-.+|.+.|+..+|+.++++-... .+-
T Consensus 328 ~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~-~p~ 406 (484)
T COG4783 328 LLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN-DPE 406 (484)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc-CCC
Confidence 98888 55666777778999999999999999998865 55 345556778899999999999999987765 455
Q ss_pred ChhhHHHHHHHHhccCChhHHHHHHHHHH
Q 038429 219 DEVTMVVVLSACAKKRDLEFGIWVSSHIE 247 (258)
Q Consensus 219 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 247 (258)
|...|..|-.+|...|+..++..-..+..
T Consensus 407 dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 407 DPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred CchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 77899999999999999888877766654
No 116
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.55 E-value=0.00028 Score=61.64 Aligned_cols=189 Identities=16% Similarity=0.024 Sum_probs=133.1
Q ss_pred cchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCCCChhhHHHHHHHHhcCCChhhHHHHHHH
Q 038429 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQ 113 (258)
Q Consensus 34 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 113 (258)
|+-..|..+..+..+ -+||+..|..+.+....-. -+++|.++++....+--.+ +-......++++++.+.|+.
T Consensus 438 g~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s--~yEkawElsn~~sarA~r~---~~~~~~~~~~fs~~~~hle~ 510 (777)
T KOG1128|consen 438 GQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPS--LYEKAWELSNYISARAQRS---LALLILSNKDFSEADKHLER 510 (777)
T ss_pred cccchHHHHHHHHhc--CCCcchhHHHhhhhccChH--HHHHHHHHhhhhhHHHHHh---hccccccchhHHHHHHHHHH
Confidence 344444444444443 3688888888888887777 7888988887654332222 22223347899999999987
Q ss_pred hHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---Chh
Q 038429 114 LVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKK---DVV 186 (258)
Q Consensus 114 m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~ 186 (258)
-.+-... -..+|-.+-.+..+.++++.+...|... +.+...||++-.+|.+.|+-.+|.+.+.+..+- +..
T Consensus 511 sl~~npl--q~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~ 588 (777)
T KOG1128|consen 511 SLEINPL--QLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQ 588 (777)
T ss_pred HhhcCcc--chhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCe
Confidence 6343333 3457777777788889999988888777 455569999999999999999999999987763 556
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHHcC-CCCChhhHHHHHHHHh
Q 038429 187 SWNSMISGFVEGGFFEKAIELYREMEVEN-VKPDEVTMVVVLSACA 231 (258)
Q Consensus 187 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~t~~~li~~~~ 231 (258)
.|...+....+.|.+++|++.+.++.... -.-|......++....
T Consensus 589 iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 589 IWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTVL 634 (777)
T ss_pred eeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHHHHH
Confidence 77788888899999999999999886532 1124444444444443
No 117
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.53 E-value=0.0024 Score=43.64 Aligned_cols=96 Identities=11% Similarity=-0.010 Sum_probs=73.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC----hhhHHHHHHHHHcCCChHHHHHHHHHHHHcC--CCCChhhHHHH
Q 038429 155 VISNSLIHFYAVCGDLAMAYCVFVMIGK--KD----VVSWNSMISGFVEGGFFEKAIELYREMEVEN--VKPDEVTMVVV 226 (258)
Q Consensus 155 ~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~t~~~l 226 (258)
.++..+...+.+.|++++|.+.|..+.+ |+ ...+..+...+.+.|++++|...|+...... -......+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 3566777888889999999999988754 33 2356668888899999999999999887642 11124457777
Q ss_pred HHHHhccCChhHHHHHHHHHHHcC
Q 038429 227 LSACAKKRDLEFGIWVSSHIEKNG 250 (258)
Q Consensus 227 i~~~~~~g~~~~a~~~~~~m~~~g 250 (258)
...+.+.|+.++|...++++.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 788888999999999999888763
No 118
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.51 E-value=0.0012 Score=52.96 Aligned_cols=138 Identities=11% Similarity=0.067 Sum_probs=94.5
Q ss_pred hhHHHHHHHHhcCCChhhHHHHHHHhHhcC-CCCCCcchHHHHHHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHH
Q 038429 89 YTWNTLIRAYSSSDEPIQSFMIFLQLVYNS-PYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHF 163 (258)
Q Consensus 89 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~ 163 (258)
.+|-.+|+..-+.+..+.|-.+|.+. ++. .+........+++. +...++.+.|..||+.. +.+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a-~~~~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRA-RKDKRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHH-HcCCCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 46778888888888888888888888 433 22333333333332 33345677788888888 7777888889999
Q ss_pred HHhcCCHHHHHHHHHhcCC--C----ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 038429 164 YAVCGDLAMAYCVFVMIGK--K----DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230 (258)
Q Consensus 164 ~~~~g~~~~a~~~~~~m~~--~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~ 230 (258)
+.+.|+.+.|..+|++... + -...|...|.-=.+.|+.+.+..+.+++.+. -|+...+..+++-|
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSDRY 150 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHCCT
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHHHh
Confidence 9999999999999988765 2 2348888888888899999999998888764 35555555555544
No 119
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.46 E-value=0.014 Score=50.83 Aligned_cols=145 Identities=11% Similarity=-0.050 Sum_probs=84.5
Q ss_pred cchhhHHHHHHHHHhh-ccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCCCChhhHHHHHHHHhcCCChhhHHHHHH
Q 038429 34 TNQKQLKRIHAQMLST-DFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFL 112 (258)
Q Consensus 34 ~~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 112 (258)
+++......|+..+.. .+.....+|.-.+......+ -.+.+..++++..+.++..-+.-|..++..+++++|-+.+.
T Consensus 116 ~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~--lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la 193 (835)
T KOG2047|consen 116 GLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHG--LPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLA 193 (835)
T ss_pred chHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCC--ChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHH
Confidence 3444444444444332 23333444555555555555 66677777777777667777778888888888888888777
Q ss_pred HhHhcC-----CCCCCcchHHHHHHHhcCcCCcchhh---hhhhcc---cCc--hhHHHHHHHHHHhcCCHHHHHHHHHh
Q 038429 113 QLVYNS-----PYFPNEFTLPFVIKAAARPVQFRVGQ---AIHGMF---EDD--LVISNSLIHFYAVCGDLAMAYCVFVM 179 (258)
Q Consensus 113 ~m~~~~-----~~~p~~~~~~~ll~~~~~~~~~~~a~---~~~~~~---~~~--~~~~~~li~~~~~~g~~~~a~~~~~~ 179 (258)
..+.+. .-+.+...|..+-+..++..+.-... .++..+ -+| ...|++|.+-|.+.|.+++|.++|++
T Consensus 194 ~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyee 273 (835)
T KOG2047|consen 194 TVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEE 273 (835)
T ss_pred HhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 663211 11334445666655555554433322 233333 223 24788888888888888888888765
Q ss_pred c
Q 038429 180 I 180 (258)
Q Consensus 180 m 180 (258)
.
T Consensus 274 a 274 (835)
T KOG2047|consen 274 A 274 (835)
T ss_pred H
Confidence 4
No 120
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.45 E-value=0.0019 Score=46.39 Aligned_cols=51 Identities=14% Similarity=0.203 Sum_probs=26.3
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCC--ChhhHHHHHHHHHcCCChHHHHHHHHH
Q 038429 160 LIHFYAVCGDLAMAYCVFVMIGKK--DVVSWNSMISGFVEGGFFEKAIELYRE 210 (258)
Q Consensus 160 li~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~ 210 (258)
|...+...|++++|...++....+ ....+...-..|.+.|++++|...|+.
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 444555556666666666543332 222333444555566666666665543
No 121
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.45 E-value=0.0054 Score=47.71 Aligned_cols=134 Identities=8% Similarity=-0.120 Sum_probs=77.9
Q ss_pred HHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCCCChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCC
Q 038429 41 RIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPY 120 (258)
Q Consensus 41 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 120 (258)
++.+++.......+......-...|...+ ++++|.+...... +..+...=+..+.+..+.+-|.+.+++| .+-
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~--~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~m-q~i-- 166 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDG--DFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKM-QQI-- 166 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCC--ChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hcc--
Confidence 34444444443444333334444566666 8888888777743 3333333344556667777888888777 432
Q ss_pred CCCcchHHHHHHHh----cCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 038429 121 FPNEFTLPFVIKAA----ARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182 (258)
Q Consensus 121 ~p~~~~~~~ll~~~----~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 182 (258)
-+..|.+.|..++ ...+.+..|.-+|+.+ +|+.-+.|....++...|++++|..++++...
T Consensus 167 -ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~ 235 (299)
T KOG3081|consen 167 -DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALD 235 (299)
T ss_pred -chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHh
Confidence 2344555444443 3344566666666666 56666666666666667777777777666544
No 122
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.42 E-value=0.041 Score=48.35 Aligned_cols=182 Identities=10% Similarity=0.001 Sum_probs=120.6
Q ss_pred hhhhhhccCCCChHHHHHHhccCCC---CChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCc
Q 038429 61 LFTPCALSTFSSLEYARKMFDQIPQ---PNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARP 137 (258)
Q Consensus 61 li~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~ 137 (258)
...-+..+| ++..|..++.+.-+ .+...|-.-+..-..+.++++|..+|.+. +. ..|+...|.--++.---.
T Consensus 590 ~ake~w~ag--dv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llaka-r~--~sgTeRv~mKs~~~er~l 664 (913)
T KOG0495|consen 590 YAKEKWKAG--DVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKA-RS--ISGTERVWMKSANLERYL 664 (913)
T ss_pred HHHHHHhcC--CcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHH-hc--cCCcchhhHHHhHHHHHh
Confidence 333344444 66666665554432 34455666666667777777777777655 32 456666666555555556
Q ss_pred CCcchhhhhhhcc---cCch-hHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHH
Q 038429 138 VQFRVGQAIHGMF---EDDL-VISNSLIHFYAVCGDLAMAYCVFVMIGK--K-DVVSWNSMISGFVEGGFFEKAIELYRE 210 (258)
Q Consensus 138 ~~~~~a~~~~~~~---~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~ 210 (258)
++.++|.++++.. -|+- -.|-.+-..+-+.++++.|.+.|..=.+ | .+..|-.|...=-+.|..-.|..++++
T Consensus 665 d~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildr 744 (913)
T KOG0495|consen 665 DNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDR 744 (913)
T ss_pred hhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHH
Confidence 6677777776665 3333 3566666666777777777777764433 5 444566666666778899999999998
Q ss_pred HHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHH
Q 038429 211 MEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEK 248 (258)
Q Consensus 211 m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 248 (258)
-...+ +-|...|...|+.-.+.|+.+.|..+..+..+
T Consensus 745 arlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ 781 (913)
T KOG0495|consen 745 ARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQ 781 (913)
T ss_pred HHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 87765 23667899999999999999999888776654
No 123
>PLN02789 farnesyltranstransferase
Probab=97.41 E-value=0.02 Score=46.86 Aligned_cols=210 Identities=8% Similarity=-0.041 Sum_probs=136.6
Q ss_pred ccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC---CChhhHHHHHHHHhcCCCh--hhH
Q 038429 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ---PNLYTWNTLIRAYSSSDEP--IQS 107 (258)
Q Consensus 33 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~--~~a 107 (258)
.+..++|..+.+.+++.+ +-+..+|+.--.++...+ .++++++..++++.+ .+..+|+..-..+.+.|+. +++
T Consensus 50 ~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~-~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~e 127 (320)
T PLN02789 50 DERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALD-ADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKE 127 (320)
T ss_pred CCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcc-hhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHH
Confidence 345556666666655543 223334544433444443 146888888877653 4566787766666666653 677
Q ss_pred HHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhc---CCH----HHHHHH
Q 038429 108 FMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVC---GDL----AMAYCV 176 (258)
Q Consensus 108 ~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~---g~~----~~a~~~ 176 (258)
+.+++.+ .+.+ +-|..+|+-..-++.+.|+++++...++.+ +.+...|+.....+.+. |+. ++..+.
T Consensus 128 l~~~~ka-l~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y 205 (320)
T PLN02789 128 LEFTRKI-LSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKY 205 (320)
T ss_pred HHHHHHH-HHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHH
Confidence 8888888 3332 345677887777888888999999988888 66777888877766655 323 345555
Q ss_pred HHhcC--CC-ChhhHHHHHHHHHcC----CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccC---------------
Q 038429 177 FVMIG--KK-DVVSWNSMISGFVEG----GFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKR--------------- 234 (258)
Q Consensus 177 ~~~m~--~~-~~~~~~~li~~~~~~----g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g--------------- 234 (258)
..... .| |...|+-+...+... ++..+|.+.+.+....+ ..+......|++.|+...
T Consensus 206 ~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~ 284 (320)
T PLN02789 206 TIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAE 284 (320)
T ss_pred HHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHhhhccchhhhhhhhcccc
Confidence 54443 34 778899888888773 33456888887766543 235667888888888642
Q ss_pred ---ChhHHHHHHHHHH
Q 038429 235 ---DLEFGIWVSSHIE 247 (258)
Q Consensus 235 ---~~~~a~~~~~~m~ 247 (258)
..++|..+++.+.
T Consensus 285 ~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 285 ELSDSTLAQAVCSELE 300 (320)
T ss_pred ccccHHHHHHHHHHHH
Confidence 2367888888873
No 124
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.39 E-value=0.0036 Score=49.57 Aligned_cols=189 Identities=12% Similarity=0.056 Sum_probs=126.2
Q ss_pred hhhhhhhhhccCCCChHHHHHHhccCCC---CChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHH-HHH
Q 038429 58 ASKLFTPCALSTFSSLEYARKMFDQIPQ---PNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV-IKA 133 (258)
Q Consensus 58 ~~~li~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l-l~~ 133 (258)
+.+.+-.+.+.. ++++|.+++..-.+ ++....+.+-.+|-...++..|-..++++ -.. -|...-|..- ...
T Consensus 13 ftaviy~lI~d~--ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL-~ql--~P~~~qYrlY~AQS 87 (459)
T KOG4340|consen 13 FTAVVYRLIRDA--RYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQL-GQL--HPELEQYRLYQAQS 87 (459)
T ss_pred hHHHHHHHHHHh--hHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhh--ChHHHHHHHHHHHH
Confidence 444454555666 78888877764433 35566777778888888888888888877 322 3444444321 223
Q ss_pred hcCcCCcchhhhhhhcccC--chhHHHHHHHHHH--hcCCHHHHHHHHHhcCC-CChhhHHHHHHHHHcCCChHHHHHHH
Q 038429 134 AARPVQFRVGQAIHGMFED--DLVISNSLIHFYA--VCGDLAMAYCVFVMIGK-KDVVSWNSMISGFVEGGFFEKAIELY 208 (258)
Q Consensus 134 ~~~~~~~~~a~~~~~~~~~--~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~-~~~~~~~~li~~~~~~g~~~~a~~~~ 208 (258)
+-+.+.+..|.++...|.. ....-..-+.+-. ..+++..+..+.+.... .+..+.+..-....+.|+.+.|.+-|
T Consensus 88 LY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkF 167 (459)
T KOG4340|consen 88 LYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKF 167 (459)
T ss_pred HHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHH
Confidence 4456677778888877733 2222222233322 35778888888877763 45555555555567889999999999
Q ss_pred HHHHHc-CCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHcCCcc
Q 038429 209 REMEVE-NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKM 253 (258)
Q Consensus 209 ~~m~~~-~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 253 (258)
....+. |+.| ...|+..+.-|. .|+.+.|.+...+++++|++-
T Consensus 168 qaAlqvsGyqp-llAYniALaHy~-~~qyasALk~iSEIieRG~r~ 211 (459)
T KOG4340|consen 168 QAALQVSGYQP-LLAYNLALAHYS-SRQYASALKHISEIIERGIRQ 211 (459)
T ss_pred HHHHhhcCCCc-hhHHHHHHHHHh-hhhHHHHHHHHHHHHHhhhhc
Confidence 887765 6655 678888887765 589999999999999999764
No 125
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.33 E-value=0.003 Score=46.77 Aligned_cols=82 Identities=7% Similarity=-0.040 Sum_probs=38.5
Q ss_pred ChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCC-CCC-cchHHHHHHHhcCcCCcchhhhhhhcc----cCchhHHHHH
Q 038429 87 NLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPY-FPN-EFTLPFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSL 160 (258)
Q Consensus 87 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~l 160 (258)
....|..+...+...|++++|+..|++. .+... .++ ...+..+...+.+.|++++|...+... +.+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~a-l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEA-LKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 3344555666666666666666666665 22111 111 123444444444444444444444444 2233344444
Q ss_pred HHHHHhcCC
Q 038429 161 IHFYAVCGD 169 (258)
Q Consensus 161 i~~~~~~g~ 169 (258)
...|...|+
T Consensus 113 g~~~~~~g~ 121 (172)
T PRK02603 113 AVIYHKRGE 121 (172)
T ss_pred HHHHHHcCC
Confidence 444544444
No 126
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.30 E-value=0.0012 Score=44.29 Aligned_cols=46 Identities=13% Similarity=0.047 Sum_probs=32.6
Q ss_pred HHHHHHHhcCCChhhHHHHHHHhHhcCCC-CCCcchHHHHHHHhcCcC
Q 038429 92 NTLIRAYSSSDEPIQSFMIFLQLVYNSPY-FPNEFTLPFVIKAAARPV 138 (258)
Q Consensus 92 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~p~~~~~~~ll~~~~~~~ 138 (258)
...|..+...+++.....+|+.+ ++.|+ .|+..+|+.++.+.++..
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqsl-kRN~i~lPsv~~Yn~VL~Si~~R~ 75 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSL-KRNGITLPSVELYNKVLKSIAKRE 75 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHH-HhcCCCCCcHHHHHHHHHHHHHcc
Confidence 34555555567777777788777 77777 777777877777766643
No 127
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.30 E-value=0.0047 Score=43.08 Aligned_cols=81 Identities=11% Similarity=-0.025 Sum_probs=62.6
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcC-------------------CCChhhHHHHHHHHHcCCChHHHHHHHHHHHH
Q 038429 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIG-------------------KKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213 (258)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~-------------------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 213 (258)
|..++.++|.++++.|+++....+.+..- .|+..+..+++.+|+.+|++..|+++.+...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 34566777777777777777777665431 26888999999999999999999999999876
Q ss_pred c-CCCCChhhHHHHHHHHhcc
Q 038429 214 E-NVKPDEVTMVVVLSACAKK 233 (258)
Q Consensus 214 ~-~~~p~~~t~~~li~~~~~~ 233 (258)
. +++.+..+|..|++-+...
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred HcCCCCCHHHHHHHHHHHHHh
Confidence 5 7777788898888866443
No 128
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.29 E-value=0.00032 Score=45.26 Aligned_cols=52 Identities=15% Similarity=0.148 Sum_probs=25.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC-C-ChhhHHHHHHHHHcCCChHHHHHHHHH
Q 038429 159 SLIHFYAVCGDLAMAYCVFVMIGK-K-DVVSWNSMISGFVEGGFFEKAIELYRE 210 (258)
Q Consensus 159 ~li~~~~~~g~~~~a~~~~~~m~~-~-~~~~~~~li~~~~~~g~~~~a~~~~~~ 210 (258)
.+..+|.+.|++++|.++++.... + +....-.+-.+|.+.|++++|+.++++
T Consensus 30 ~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 30 NLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 355555666666666666655111 1 212222334455556666666665543
No 129
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.26 E-value=0.019 Score=50.99 Aligned_cols=196 Identities=12% Similarity=0.009 Sum_probs=134.9
Q ss_pred hhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC---CChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCc
Q 038429 48 STDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ---PNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNE 124 (258)
Q Consensus 48 ~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~ 124 (258)
...+..++.+|..|..+...+| +++.+.+.|++... .....|+.+-..|...|....|..+++.-.....-+++.
T Consensus 316 ~~~~qnd~ai~d~Lt~al~~~g--~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~ 393 (799)
T KOG4162|consen 316 LKKFQNDAAIFDHLTFALSRCG--QFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDI 393 (799)
T ss_pred HhhhcchHHHHHHHHHHHHHHH--HHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcc
Confidence 3466779999999999999999 99999999998765 456779999999999999999999988762222222333
Q ss_pred chHHHHHHHhcCc-CCcchhhhhhhcc---------cCchhHHHHHHHHHHhc-----------CCHHHHHHHHHhcCC-
Q 038429 125 FTLPFVIKAAARP-VQFRVGQAIHGMF---------EDDLVISNSLIHFYAVC-----------GDLAMAYCVFVMIGK- 182 (258)
Q Consensus 125 ~~~~~ll~~~~~~-~~~~~a~~~~~~~---------~~~~~~~~~li~~~~~~-----------g~~~~a~~~~~~m~~- 182 (258)
..+-..-..|.+. +..+++...-... ......|-.+--+|+.. ....++.+.+++..+
T Consensus 394 s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~ 473 (799)
T KOG4162|consen 394 SVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQF 473 (799)
T ss_pred hHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhc
Confidence 3344444444433 4444444333322 33334444444444432 124566777776654
Q ss_pred ----CChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHH
Q 038429 183 ----KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIE 247 (258)
Q Consensus 183 ----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 247 (258)
|++.-|-++ -|+..++++.|++..++..+.+-.-+...|..|.-.+...+++.+|..+++...
T Consensus 474 d~~dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al 540 (799)
T KOG4162|consen 474 DPTDPLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAAL 540 (799)
T ss_pred CCCCchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 333333333 456667899999999999988666788889999999999999999999998654
No 130
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.25 E-value=0.015 Score=53.58 Aligned_cols=53 Identities=17% Similarity=0.088 Sum_probs=29.7
Q ss_pred hHHHHHHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 038429 126 TLPFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVFVM 179 (258)
Q Consensus 126 ~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 179 (258)
++..+..+|-+.|+.+++..+++.+ +.|+...|.+...|... ++++|.+++..
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~K 174 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKK 174 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHH
Confidence 4444555555556666666665555 44555555565555555 56665555544
No 131
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.23 E-value=0.0028 Score=44.23 Aligned_cols=79 Identities=8% Similarity=0.037 Sum_probs=58.0
Q ss_pred chhhhhhhhhhhhccCCCChHHHHHHhccCC-------------------CCChhhHHHHHHHHhcCCChhhHHHHHHHh
Q 038429 54 DPYSASKLFTPCALSTFSSLEYARKMFDQIP-------------------QPNLYTWNTLIRAYSSSDEPIQSFMIFLQL 114 (258)
Q Consensus 54 ~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~-------------------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 114 (258)
|..++..+|-++++.| +++....+++..- .|+.....+++.+|+..|++..|+++++..
T Consensus 1 de~~~~~ii~al~r~g--~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~f 78 (126)
T PF12921_consen 1 DEELLCNIIYALGRSG--QLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFF 78 (126)
T ss_pred ChHHHHHHHHHHhhcC--CHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 3456777788888888 8777777765331 167777888888888888888888888887
Q ss_pred HhcCCCCCCcchHHHHHHHh
Q 038429 115 VYNSPYFPNEFTLPFVIKAA 134 (258)
Q Consensus 115 ~~~~~~~p~~~~~~~ll~~~ 134 (258)
.+..+++.+..+|..|++=+
T Consensus 79 s~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 79 SRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred HHHcCCCCCHHHHHHHHHHH
Confidence 67777777777777777644
No 132
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.21 E-value=0.0043 Score=45.72 Aligned_cols=27 Identities=11% Similarity=0.084 Sum_probs=15.6
Q ss_pred hhhHHHHHHHHhcCCChhhHHHHHHHh
Q 038429 88 LYTWNTLIRAYSSSDEPIQSFMIFLQL 114 (258)
Q Consensus 88 ~~~~~~li~~~~~~g~~~~a~~~~~~m 114 (258)
...|..+...+...|++++|+..|+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~a 61 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEA 61 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344555555555566666666666555
No 133
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.20 E-value=0.0015 Score=41.89 Aligned_cols=90 Identities=13% Similarity=0.112 Sum_probs=47.4
Q ss_pred HHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcccCchhHHHHHHHHHHhcCCH
Q 038429 91 WNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDL 170 (258)
Q Consensus 91 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~ 170 (258)
|..+...+...|++++|...++.. .+. .|+ +...+..+...+...|++
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~-~~~--~~~-----------------------------~~~~~~~~~~~~~~~~~~ 50 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKA-LEL--DPD-----------------------------NADAYYNLAAAYYKLGKY 50 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHH-Hhc--CCc-----------------------------cHHHHHHHHHHHHHHHHH
Confidence 445566666677777777777666 222 111 112334444445555555
Q ss_pred HHHHHHHHhcCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHH
Q 038429 171 AMAYCVFVMIGK--K-DVVSWNSMISGFVEGGFFEKAIELYREME 212 (258)
Q Consensus 171 ~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 212 (258)
++|.+.|+...+ | +..++..+...+...|+.++|...+.+..
T Consensus 51 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 95 (100)
T cd00189 51 EEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKAL 95 (100)
T ss_pred HHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 566655554332 2 33445555555566666666666655544
No 134
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.16 E-value=0.029 Score=52.74 Aligned_cols=218 Identities=11% Similarity=0.011 Sum_probs=134.5
Q ss_pred cccccchhhHHHHHHHHHhhcc---Cc--chhhhhhhhhhhhccCCCChHHHHHHhccCCC-------C----ChhhHHH
Q 038429 30 PHFLTNQKQLKRIHAQMLSTDF---FF--DPYSASKLFTPCALSTFSSLEYARKMFDQIPQ-------P----NLYTWNT 93 (258)
Q Consensus 30 ~~~~~~~~~a~~~~~~m~~~~~---~~--~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~-------~----~~~~~~~ 93 (258)
+...|++++|...+.+.....- .+ ...++..+...+...| +++.|...+++... + ....+..
T Consensus 501 ~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 578 (903)
T PRK04841 501 HHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQG--FLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRI 578 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHhccccccHHHHHHHH
Confidence 4456788888888877764311 11 1234455566667777 88888887765432 1 1223445
Q ss_pred HHHHHhcCCChhhHHHHHHHhHhc-CCCCCC--cchHHHHHHHhcCcCCcchhhhhhhcc-----cC-chhHH-----HH
Q 038429 94 LIRAYSSSDEPIQSFMIFLQLVYN-SPYFPN--EFTLPFVIKAAARPVQFRVGQAIHGMF-----ED-DLVIS-----NS 159 (258)
Q Consensus 94 li~~~~~~g~~~~a~~~~~~m~~~-~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~-----~~-~~~~~-----~~ 159 (258)
+...+...|++++|...+.+.... ....+. ..++..+...+...|+++.|...+... .. ....+ ..
T Consensus 579 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~ 658 (903)
T PRK04841 579 RAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKV 658 (903)
T ss_pred HHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHH
Confidence 555667779999998888775221 111121 233444555677788888887776665 11 11111 11
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCChh-------hHHHHHHHHHcCCChHHHHHHHHHHHHc----CCCCC-hhhHHHHH
Q 038429 160 LIHFYAVCGDLAMAYCVFVMIGKKDVV-------SWNSMISGFVEGGFFEKAIELYREMEVE----NVKPD-EVTMVVVL 227 (258)
Q Consensus 160 li~~~~~~g~~~~a~~~~~~m~~~~~~-------~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~-~~t~~~li 227 (258)
.+..+...|+.+.|.+.+.....+... .+..+..++...|+.++|..++++.... |..++ ..+...+-
T Consensus 659 ~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la 738 (903)
T PRK04841 659 RLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLN 738 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 224445678888988888766543211 1345666778889999999999887553 33332 24566667
Q ss_pred HHHhccCChhHHHHHHHHHHHc
Q 038429 228 SACAKKRDLEFGIWVSSHIEKN 249 (258)
Q Consensus 228 ~~~~~~g~~~~a~~~~~~m~~~ 249 (258)
.++.+.|+.++|...+.+..+.
T Consensus 739 ~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 739 QLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 7788999999999999987654
No 135
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.15 E-value=0.0028 Score=50.88 Aligned_cols=124 Identities=13% Similarity=0.031 Sum_probs=93.8
Q ss_pred chHHHHHHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHH-HHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHH
Q 038429 125 FTLPFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHF-YAVCGDLAMAYCVFVMIGK---KDVVSWNSMISGFV 196 (258)
Q Consensus 125 ~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~-~~~~g~~~~a~~~~~~m~~---~~~~~~~~li~~~~ 196 (258)
.+|..+++..-+.+..+.|..+|... ..+..+|-..... |...++.+.|.++|+...+ .+...|...+.-+.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 36888889999999999999999999 2234444444444 3335677779999998765 47788999999999
Q ss_pred cCCChHHHHHHHHHHHHcCCCCCh---hhHHHHHHHHhccCChhHHHHHHHHHHHc
Q 038429 197 EGGFFEKAIELYREMEVENVKPDE---VTMVVVLSACAKKRDLEFGIWVSSHIEKN 249 (258)
Q Consensus 197 ~~g~~~~a~~~~~~m~~~~~~p~~---~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 249 (258)
..|+.+.|..+|++.... +.++. ..|...++--.+.|+++.+..+.+.+.+.
T Consensus 82 ~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 82 KLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999998765 43333 47999999999999999999999887653
No 136
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.10 E-value=0.083 Score=46.24 Aligned_cols=100 Identities=14% Similarity=0.122 Sum_probs=73.1
Q ss_pred cCchhHHH--HHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHH---HHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHH
Q 038429 151 EDDLVISN--SLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSM---ISGFVEGGFFEKAIELYREMEVENVKPDEVTMVV 225 (258)
Q Consensus 151 ~~~~~~~~--~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~l---i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ 225 (258)
+|+...|+ -++..|-+.|+++.|....+.....++..+... -..+..+|.+++|..++++..+... ||...=..
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-aDR~INsK 444 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-ADRAINSK 444 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-hhHHHHHH
Confidence 45555554 567888899999999999998877544433333 3677889999999999998877542 44444335
Q ss_pred HHHHHhccCChhHHHHHHHHHHHcCC
Q 038429 226 VLSACAKKRDLEFGIWVSSHIEKNGI 251 (258)
Q Consensus 226 li~~~~~~g~~~~a~~~~~~m~~~g~ 251 (258)
-.+-..+.+++++|.++.....+.|.
T Consensus 445 cAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 445 CAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHccccHHHHHHHHHhhhccc
Confidence 56666788999999999888877764
No 137
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.07 E-value=0.0021 Score=41.38 Aligned_cols=78 Identities=12% Similarity=-0.018 Sum_probs=58.4
Q ss_pred ccchhhHHHHHHHHHhhccC-cchhhhhhhhhhhhccCCCChHHHHHHhccCCC---CChhhHHHHHHHHhcCCChhhHH
Q 038429 33 LTNQKQLKRIHAQMLSTDFF-FDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ---PNLYTWNTLIRAYSSSDEPIQSF 108 (258)
Q Consensus 33 ~~~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~ 108 (258)
.|+++.|..+++.+...... ++...+-.+..++.+.| ++++|..+++. .+ .+....-.+..++.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~--~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQG--KYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTT--HHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCC--CHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 46788999999999887642 34555666888899999 99999999988 33 34344556688889999999999
Q ss_pred HHHHH
Q 038429 109 MIFLQ 113 (258)
Q Consensus 109 ~~~~~ 113 (258)
++|++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 98875
No 138
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.05 E-value=0.044 Score=51.57 Aligned_cols=217 Identities=12% Similarity=-0.016 Sum_probs=136.4
Q ss_pred cccccchhhHHHHHHHHHhhccCcch----hhhhhhhhhhhccCCCChHHHHHHhccCCC-------C--ChhhHHHHHH
Q 038429 30 PHFLTNQKQLKRIHAQMLSTDFFFDP----YSASKLFTPCALSTFSSLEYARKMFDQIPQ-------P--NLYTWNTLIR 96 (258)
Q Consensus 30 ~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~~~~~~~~a~~~~~~m~~-------~--~~~~~~~li~ 96 (258)
+...|+++.+...+......--..+. ...+.+...+...| +++.|...+++... + -..++..+..
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G--~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~ 539 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKG--ELARALAMMQQTEQMARQHDVYHYALWSLLQQSE 539 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence 34577889999988887653111121 23455555666778 99999888876542 1 1234566677
Q ss_pred HHhcCCChhhHHHHHHHhHh---cCCCCC---CcchHHHHHHHhcCcCCcchhhhhhhcc-------cC--chhHHHHHH
Q 038429 97 AYSSSDEPIQSFMIFLQLVY---NSPYFP---NEFTLPFVIKAAARPVQFRVGQAIHGMF-------ED--DLVISNSLI 161 (258)
Q Consensus 97 ~~~~~g~~~~a~~~~~~m~~---~~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~-------~~--~~~~~~~li 161 (258)
.+...|++++|...+++... ..+... ....+..+...+...|++++|...+... .+ ....+..+.
T Consensus 540 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 619 (903)
T PRK04841 540 ILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLA 619 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHH
Confidence 88889999999998877522 222211 1223444555667779999998877766 11 233444566
Q ss_pred HHHHhcCCHHHHHHHHHhcCC----CC-hhhH-----HHHHHHHHcCCChHHHHHHHHHHHHcCCCCCh---hhHHHHHH
Q 038429 162 HFYAVCGDLAMAYCVFVMIGK----KD-VVSW-----NSMISGFVEGGFFEKAIELYREMEVENVKPDE---VTMVVVLS 228 (258)
Q Consensus 162 ~~~~~~g~~~~a~~~~~~m~~----~~-~~~~-----~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~---~t~~~li~ 228 (258)
..+...|+.++|.+.+..... .. ...+ ...+..+...|+.+.|..++............ ..+..+..
T Consensus 620 ~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~ 699 (903)
T PRK04841 620 KISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIAR 699 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHH
Confidence 677889999999988876632 11 1111 11224455678999998887665432111111 11345667
Q ss_pred HHhccCChhHHHHHHHHHHH
Q 038429 229 ACAKKRDLEFGIWVSSHIEK 248 (258)
Q Consensus 229 ~~~~~g~~~~a~~~~~~m~~ 248 (258)
++...|+.++|...+++...
T Consensus 700 ~~~~~g~~~~A~~~l~~al~ 719 (903)
T PRK04841 700 AQILLGQFDEAEIILEELNE 719 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 78889999999999998754
No 139
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.04 E-value=0.028 Score=49.97 Aligned_cols=227 Identities=11% Similarity=-0.095 Sum_probs=142.7
Q ss_pred eeeecCCCccCcccccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC--C----------
Q 038429 19 TLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ--P---------- 86 (258)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~--~---------- 86 (258)
.+..+..+...++..++++.|.+...+..+.+-.-++..|..|...++..+ ++.+|+.+.+.... +
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~k--r~~~Al~vvd~al~E~~~N~~l~~~~~ 554 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQK--RLKEALDVVDAALEEFGDNHVLMDGKI 554 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhh--hhHHHHHHHHHHHHHhhhhhhhchhhh
Confidence 334444444567778899999999999988866778888998888888888 99988888764321 1
Q ss_pred -----------ChhhHHHHHHHHhcC-----------------------CChhhHHHHHHHhH-------hcCC------
Q 038429 87 -----------NLYTWNTLIRAYSSS-----------------------DEPIQSFMIFLQLV-------YNSP------ 119 (258)
Q Consensus 87 -----------~~~~~~~li~~~~~~-----------------------g~~~~a~~~~~~m~-------~~~~------ 119 (258)
-..|+..++..+-.. ++..++.+-..... +..|
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp 634 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLP 634 (799)
T ss_pred hhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccC
Confidence 122233333322200 01111111111110 0011
Q ss_pred ---CCCCcc--------hHHHHHHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhcCCHHHHHHHHHhcC--C
Q 038429 120 ---YFPNEF--------TLPFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIG--K 182 (258)
Q Consensus 120 ---~~p~~~--------~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~ 182 (258)
+.|+.. .|......+.+.++.++|...+.+. +.....|...-..+-..|..++|.+.|.... .
T Consensus 635 ~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld 714 (799)
T KOG4162|consen 635 SSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD 714 (799)
T ss_pred cccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC
Confidence 111111 1333444555566666665444444 4444555555566677788888888887654 4
Q ss_pred C-ChhhHHHHHHHHHcCCChHHHHH--HHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHH
Q 038429 183 K-DVVSWNSMISGFVEGGFFEKAIE--LYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEK 248 (258)
Q Consensus 183 ~-~~~~~~~li~~~~~~g~~~~a~~--~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 248 (258)
| ++...+++-..+.+.|+..-|.. ++.++.+.+ +-+...|-.+-..+-+.|+.+.|.+.|+-..+
T Consensus 715 P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 715 PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 6 55678888899999998777777 888887754 23557789999999999999999999987654
No 140
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.03 E-value=0.015 Score=48.93 Aligned_cols=139 Identities=14% Similarity=0.104 Sum_probs=69.7
Q ss_pred ChHHHHHHhccCCC---CChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCc-chHHHHHHHhcCcCCcchhhhhh
Q 038429 72 SLEYARKMFDQIPQ---PNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNE-FTLPFVIKAAARPVQFRVGQAIH 147 (258)
Q Consensus 72 ~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~ 147 (258)
++..|.++|++... .+...|-.-+.+=.+..++..|-.++++.+. +.|-+ ..|---+..=-..|++..|.++|
T Consensus 88 e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt---~lPRVdqlWyKY~ymEE~LgNi~gaRqif 164 (677)
T KOG1915|consen 88 EIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVT---ILPRVDQLWYKYIYMEEMLGNIAGARQIF 164 (677)
T ss_pred HHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHH---hcchHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 44455555554432 3444454455555555555566666555421 11221 11222222223345555555555
Q ss_pred hcc---cCchhHHHHHHHHHHhcCCHHHHHHHHHhc--CCCChhhHHHHHHHHHcCCChHHHHHHHHHHHH
Q 038429 148 GMF---EDDLVISNSLIHFYAVCGDLAMAYCVFVMI--GKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213 (258)
Q Consensus 148 ~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 213 (258)
+.- +|+...|++.|+.=.+-..++.|..+++.. ..|++.+|--...-=.++|++.-|..+|+...+
T Consensus 165 erW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie 235 (677)
T KOG1915|consen 165 ERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIE 235 (677)
T ss_pred HHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 544 556666666666555555666666665543 235555555555555555555555555555443
No 141
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.01 E-value=0.0084 Score=40.92 Aligned_cols=96 Identities=15% Similarity=0.023 Sum_probs=52.9
Q ss_pred hHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcccCchhHHHHHHHHHHhcCC
Q 038429 90 TWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGD 169 (258)
Q Consensus 90 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~ 169 (258)
++..+...+.+.|++++|...|+.+.... |+.. .....+..+...+.+.|+
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~--------------------------~~~~~~~~l~~~~~~~~~ 54 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKY---PKST--------------------------YAPNAHYWLGEAYYAQGK 54 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCcc--------------------------ccHHHHHHHHHHHHhhcc
Confidence 34555666666777777777777662221 1110 001233345555666666
Q ss_pred HHHHHHHHHhcCC--CC----hhhHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 038429 170 LAMAYCVFVMIGK--KD----VVSWNSMISGFVEGGFFEKAIELYREMEVE 214 (258)
Q Consensus 170 ~~~a~~~~~~m~~--~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 214 (258)
++.|.+.|+.... |+ ...+..+...+...|+.++|...+++....
T Consensus 55 ~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 55 YADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 6666666665432 32 234555555666666777777777666654
No 142
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.01 E-value=0.036 Score=50.99 Aligned_cols=86 Identities=13% Similarity=-0.026 Sum_probs=59.5
Q ss_pred hhhhhhhhhhhhccCCCChHHHHHHhccCCCCChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHh
Q 038429 55 PYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAA 134 (258)
Q Consensus 55 ~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~ 134 (258)
+.+|..+..+=.+.+ .+.+|.+-|-+. .|+..|..++....+.|.+++-.+.+.-. ++..-.|... +.||-+|
T Consensus 1104 p~vWsqlakAQL~~~--~v~dAieSyika--dDps~y~eVi~~a~~~~~~edLv~yL~Ma-Rkk~~E~~id--~eLi~Ay 1176 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGG--LVKDAIESYIKA--DDPSNYLEVIDVASRTGKYEDLVKYLLMA-RKKVREPYID--SELIFAY 1176 (1666)
T ss_pred hHHHHHHHHHHHhcC--chHHHHHHHHhc--CCcHHHHHHHHHHHhcCcHHHHHHHHHHH-HHhhcCccch--HHHHHHH
Confidence 455666666666666 666666655433 56677888888888888888888877655 6666566544 5678888
Q ss_pred cCcCCcchhhhhh
Q 038429 135 ARPVQFRVGQAIH 147 (258)
Q Consensus 135 ~~~~~~~~a~~~~ 147 (258)
++.+++.+-+.+.
T Consensus 1177 Akt~rl~elE~fi 1189 (1666)
T KOG0985|consen 1177 AKTNRLTELEEFI 1189 (1666)
T ss_pred HHhchHHHHHHHh
Confidence 8888776655544
No 143
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.00 E-value=0.022 Score=52.42 Aligned_cols=61 Identities=16% Similarity=0.116 Sum_probs=50.6
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 038429 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGK--K-DVVSWNSMISGFVEGGFFEKAIELYREMEVE 214 (258)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 214 (258)
+...+-.+..+|-+.|+.++|..+++++.+ | |....|.+-..|... +.++|++++.+....
T Consensus 115 ~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 115 NKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 335677788899999999999999998876 3 778899999999888 999999888776554
No 144
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.98 E-value=0.054 Score=42.05 Aligned_cols=174 Identities=13% Similarity=0.085 Sum_probs=112.8
Q ss_pred CChHHHHHHhccCCC--------CCh-hhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHH-HhcCcCCc
Q 038429 71 SSLEYARKMFDQIPQ--------PNL-YTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK-AAARPVQF 140 (258)
Q Consensus 71 ~~~~~a~~~~~~m~~--------~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~-~~~~~~~~ 140 (258)
.+.++..+++.++.. ++. ..|..++-+....|+.+.|...++++ ++. . |+..-...|=. -+-..|++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L-~~~-f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQL-RDR-F-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHH-HHh-C-CCChhHHHHHHHHHHHhhch
Confidence 377778887776642 232 23666677777778888888888887 443 2 33322211111 12335678
Q ss_pred chhhhhhhcc----cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHH
Q 038429 141 RVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK---KDVVSWNSMISGFVEGGFFEKAIELYREMEV 213 (258)
Q Consensus 141 ~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 213 (258)
++|.+.++.+ +.|..++--=+-..-..|+.-+|++-+....+ -|...|.-+-+.|..-|++++|..-++++.-
T Consensus 103 ~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 103 KEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred hhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 8888888887 55666776666666667777777777766554 3888888888888888888888888888876
Q ss_pred cCCCCCh-hhHHHHHHHHhccC---ChhHHHHHHHHHHHc
Q 038429 214 ENVKPDE-VTMVVVLSACAKKR---DLEFGIWVSSHIEKN 249 (258)
Q Consensus 214 ~~~~p~~-~t~~~li~~~~~~g---~~~~a~~~~~~m~~~ 249 (258)
. .|-. ..|..+-+.+-..| +.+.|..++....+.
T Consensus 183 ~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 183 I--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred c--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 3 4544 34455555544433 455677777766554
No 145
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.94 E-value=0.01 Score=47.74 Aligned_cols=107 Identities=14% Similarity=0.107 Sum_probs=55.8
Q ss_pred HHHhcCcCCcchhhhhhhcccCchhHHHHHHHHHHhc-CCHHHHHHHHHhcCC-------C--ChhhHHHHHHHHHcCCC
Q 038429 131 IKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVC-GDLAMAYCVFVMIGK-------K--DVVSWNSMISGFVEGGF 200 (258)
Q Consensus 131 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~-------~--~~~~~~~li~~~~~~g~ 200 (258)
+..|...|++..+-.+ +..+-..|-.. |++++|.+.|.+..+ + -..++..+...+.+.|+
T Consensus 101 ~~~y~~~G~~~~aA~~----------~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~ 170 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKC----------LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGR 170 (282)
T ss_dssp HHHHHHCT-HHHHHHH----------HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHhcCcHHHHHHH----------HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCC
Confidence 3444555555544332 33344444444 566666665554332 1 12355666777788888
Q ss_pred hHHHHHHHHHHHHcCCC-----CChh-hHHHHHHHHhccCChhHHHHHHHHHH
Q 038429 201 FEKAIELYREMEVENVK-----PDEV-TMVVVLSACAKKRDLEFGIWVSSHIE 247 (258)
Q Consensus 201 ~~~a~~~~~~m~~~~~~-----p~~~-t~~~li~~~~~~g~~~~a~~~~~~m~ 247 (258)
+++|.++|++....-.. ++.. .|-..+-++...||...|.+.+++..
T Consensus 171 y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~ 223 (282)
T PF14938_consen 171 YEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYC 223 (282)
T ss_dssp HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88888888877654322 2222 22223334445678888888887765
No 146
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.91 E-value=0.0079 Score=50.10 Aligned_cols=59 Identities=5% Similarity=-0.133 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHH
Q 038429 155 VISNSLIHFYAVCGDLAMAYCVFVMIGK--K-DVVSWNSMISGFVEGGFFEKAIELYREMEV 213 (258)
Q Consensus 155 ~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 213 (258)
..|..+..+|.+.|++++|...++...+ | +...|..+-.+|...|++++|+..|++..+
T Consensus 37 ~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~ 98 (356)
T PLN03088 37 ELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGAS 98 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3444445555555555555555554432 2 334455555555555566666665555554
No 147
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.88 E-value=0.039 Score=47.70 Aligned_cols=173 Identities=9% Similarity=-0.027 Sum_probs=106.6
Q ss_pred hhhhccCCCChHHHHHHhccCCC---CChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHh--cCc
Q 038429 63 TPCALSTFSSLEYARKMFDQIPQ---PNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAA--ARP 137 (258)
Q Consensus 63 ~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~--~~~ 137 (258)
+-+...+ ++++|.....++.. .+...+..-+-++.+.+++++|+.+.+.- .+...+..-+ +=.+| -+.
T Consensus 20 n~~~~~~--e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~---~~~~~~~~~~--fEKAYc~Yrl 92 (652)
T KOG2376|consen 20 NRHGKNG--EYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKN---GALLVINSFF--FEKAYCEYRL 92 (652)
T ss_pred HHhccch--HHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhc---chhhhcchhh--HHHHHHHHHc
Confidence 3445556 88888877776653 45566777788888889999988554322 1111111111 23333 456
Q ss_pred CCcchhhhhhhcc-cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHH-cCCChHHHHHHHHHHHHcC
Q 038429 138 VQFRVGQAIHGMF-EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFV-EGGFFEKAIELYREMEVEN 215 (258)
Q Consensus 138 ~~~~~a~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~-~~g~~~~a~~~~~~m~~~~ 215 (258)
+..++|...++.. +.|..+-..--..+-+.|++++|.++|..+.+.+...+...+.+=+ ..+- +... .-|....
T Consensus 93 nk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a---~l~~-~~~q~v~ 168 (652)
T KOG2376|consen 93 NKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA---ALQV-QLLQSVP 168 (652)
T ss_pred ccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH---hhhH-HHHHhcc
Confidence 7888888888876 4444466666677888999999999999987765555554443211 1111 1111 1234444
Q ss_pred CCCChhhHHHHHHH---HhccCChhHHHHHHHHHH
Q 038429 216 VKPDEVTMVVVLSA---CAKKRDLEFGIWVSSHIE 247 (258)
Q Consensus 216 ~~p~~~t~~~li~~---~~~~g~~~~a~~~~~~m~ 247 (258)
..| ..||..+.+. +...|++..|.+++....
T Consensus 169 ~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~ 202 (652)
T KOG2376|consen 169 EVP-EDSYELLYNTACILIENGKYNQAIELLEKAL 202 (652)
T ss_pred CCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 445 4566666654 446799999999999873
No 148
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.88 E-value=0.2 Score=45.64 Aligned_cols=214 Identities=14% Similarity=0.047 Sum_probs=138.5
Q ss_pred ccccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC---CChhhHHHHHHHHhcCCChhhH
Q 038429 31 HFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ---PNLYTWNTLIRAYSSSDEPIQS 107 (258)
Q Consensus 31 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a 107 (258)
-..++++.|.+....+.+.- |+ ..|...+.++...+.|..++|..+++.... .|..|...+-..|...++.++|
T Consensus 20 ld~~qfkkal~~~~kllkk~--Pn-~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH--PN-ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC--CC-cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence 34577888888888776652 22 235556666654433499999988886653 5788999999999999999999
Q ss_pred HHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcch----hhhhhhcccCchhHHHHHHHHHHhcCC----------HHHH
Q 038429 108 FMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRV----GQAIHGMFEDDLVISNSLIHFYAVCGD----------LAMA 173 (258)
Q Consensus 108 ~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~a 173 (258)
..+|++... .-|+..-...+..+|++.+.+.+ |.++++..+...+.+-++|+.+...-. ..-|
T Consensus 97 ~~~Ye~~~~---~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 97 VHLYERANQ---KYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHHh---hCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 999998832 34677777888889999887754 566666667777877777777765421 2345
Q ss_pred HHHHHhcCCCC-----hhhHHHHHHHHHcCCChHHHHHHHHHHHHcCC-CCChhhHHHHHHHHhccCChhHHHHHHHHHH
Q 038429 174 YCVFVMIGKKD-----VVSWNSMISGFVEGGFFEKAIELYREMEVENV-KPDEVTMVVVLSACAKKRDLEFGIWVSSHIE 247 (258)
Q Consensus 174 ~~~~~~m~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 247 (258)
.+.++.+.+.. ..-.-.-...+-..|++++|.+++..=..... .-+...-+--++-+...+++.+..++-.++.
T Consensus 174 ~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 174 EKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 55555554432 11111222334556778999988844333222 2233333445555666677777776666666
Q ss_pred HcC
Q 038429 248 KNG 250 (258)
Q Consensus 248 ~~g 250 (258)
..|
T Consensus 254 ~k~ 256 (932)
T KOG2053|consen 254 EKG 256 (932)
T ss_pred HhC
Confidence 554
No 149
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.85 E-value=0.0074 Score=48.96 Aligned_cols=152 Identities=13% Similarity=0.193 Sum_probs=99.9
Q ss_pred HHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHH-----hcCcCCcchhhhhhhcc------cCchhHHHH
Q 038429 91 WNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKA-----AARPVQFRVGQAIHGMF------EDDLVISNS 159 (258)
Q Consensus 91 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~-----~~~~~~~~~a~~~~~~~------~~~~~~~~~ 159 (258)
--.|+--|.+.+++.+|..+.+++ . ...|-....-.+..+ ......+.-|.+.|+.. ..++.--.+
T Consensus 288 RlNL~iYyL~q~dVqeA~~L~Kdl-~--PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQs 364 (557)
T KOG3785|consen 288 RLNLIIYYLNQNDVQEAISLCKDL-D--PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQS 364 (557)
T ss_pred hhhheeeecccccHHHHHHHHhhc-C--CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHH
Confidence 445666778889999999888777 1 122222222222222 22233456677777777 233344556
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC----CChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhH-HHHHHHHhccC
Q 038429 160 LIHFYAVCGDLAMAYCVFVMIGK----KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTM-VVVLSACAKKR 234 (258)
Q Consensus 160 li~~~~~~g~~~~a~~~~~~m~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~-~~li~~~~~~g 234 (258)
+...+.-..++++.+-.++..+. .|...| .+..+++..|+..+|+++|-......++ |..+| ..|.++|.+.+
T Consensus 365 mAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nk 442 (557)
T KOG3785|consen 365 MASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNK 442 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcC
Confidence 66777777788888888877764 344444 4668889999999999999776655554 55565 55667788999
Q ss_pred ChhHHHHHHHHHH
Q 038429 235 DLEFGIWVSSHIE 247 (258)
Q Consensus 235 ~~~~a~~~~~~m~ 247 (258)
..+.|.+++-.+.
T Consensus 443 kP~lAW~~~lk~~ 455 (557)
T KOG3785|consen 443 KPQLAWDMMLKTN 455 (557)
T ss_pred CchHHHHHHHhcC
Confidence 9999988876553
No 150
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.84 E-value=0.025 Score=40.72 Aligned_cols=85 Identities=7% Similarity=-0.106 Sum_probs=43.3
Q ss_pred HHHHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhcCCHHHHHHHHHhcC--CC-ChhhHHHHHHHHHcCCCh
Q 038429 129 FVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIG--KK-DVVSWNSMISGFVEGGFF 201 (258)
Q Consensus 129 ~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~ 201 (258)
.+-..+...|++++|+.+|+.+ +-+..-|..|--++...|++++|+..|.... +| |...+-.+-.++...|+.
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~ 119 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNV 119 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCH
Confidence 3334444555555555555555 3334445555555555555555555554332 12 444555555555555555
Q ss_pred HHHHHHHHHHHH
Q 038429 202 EKAIELYREMEV 213 (258)
Q Consensus 202 ~~a~~~~~~m~~ 213 (258)
+.|.+-|+....
T Consensus 120 ~~A~~aF~~Ai~ 131 (157)
T PRK15363 120 CYAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHHHH
Confidence 555555554443
No 151
>PLN02789 farnesyltranstransferase
Probab=96.82 E-value=0.12 Score=42.38 Aligned_cols=193 Identities=7% Similarity=-0.029 Sum_probs=123.5
Q ss_pred ccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC---CChhhHHHHHHHHhcCC-ChhhHH
Q 038429 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ---PNLYTWNTLIRAYSSSD-EPIQSF 108 (258)
Q Consensus 33 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g-~~~~a~ 108 (258)
..++.++...|..+.+. .+ ..++|..+.++..+ .+..+|+..-..+...| ++++++
T Consensus 33 ~~~~~~a~~~~ra~l~~------------------~e--~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL 92 (320)
T PLN02789 33 TPEFREAMDYFRAVYAS------------------DE--RSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEEL 92 (320)
T ss_pred CHHHHHHHHHHHHHHHc------------------CC--CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHH
Confidence 35566666666655543 34 66677777766544 34456776666667777 579999
Q ss_pred HHHHHhHhcCCCCCCcchHHHHHHHhcCcCC--cchhhhhhhcc----cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 038429 109 MIFLQLVYNSPYFPNEFTLPFVIKAAARPVQ--FRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182 (258)
Q Consensus 109 ~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~--~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 182 (258)
..++.+ .+.+ +-+..+|+-.--.+.+.|+ .+.+..+.+.+ +.+..+|+...-.+.+.|+++++++.++.+.+
T Consensus 93 ~~~~~~-i~~n-pknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~ 170 (320)
T PLN02789 93 DFAEDV-AEDN-PKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLE 170 (320)
T ss_pred HHHHHH-HHHC-CcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 999998 4332 2233455543333334443 24556666555 67788999999999999999999999999865
Q ss_pred ---CChhhHHHHHHHHHcC---CCh----HHHHHHHHHHHHcCCCC-ChhhHHHHHHHHhcc----CChhHHHHHHHHHH
Q 038429 183 ---KDVVSWNSMISGFVEG---GFF----EKAIELYREMEVENVKP-DEVTMVVVLSACAKK----RDLEFGIWVSSHIE 247 (258)
Q Consensus 183 ---~~~~~~~~li~~~~~~---g~~----~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~----g~~~~a~~~~~~m~ 247 (258)
.|...|+.....+.+. |.. ++++.+..++... .| |...|+.+...+... +...+|.+.+.+..
T Consensus 171 ~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~--~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~ 248 (320)
T PLN02789 171 EDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA--NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVL 248 (320)
T ss_pred HCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh--CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhh
Confidence 3667787666555443 222 4566666565553 34 456677777777662 34456777777765
Q ss_pred Hc
Q 038429 248 KN 249 (258)
Q Consensus 248 ~~ 249 (258)
+.
T Consensus 249 ~~ 250 (320)
T PLN02789 249 SK 250 (320)
T ss_pred cc
Confidence 53
No 152
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.81 E-value=0.15 Score=39.76 Aligned_cols=178 Identities=10% Similarity=0.053 Sum_probs=116.5
Q ss_pred ccchhhHHHHHHHHHhh---c-cCcchhh-hhhhhhhhhccCCCChHHHHHHhccCCC--CChhhHHHHHH-HHhcCCCh
Q 038429 33 LTNQKQLKRIHAQMLST---D-FFFDPYS-ASKLFTPCALSTFSSLEYARKMFDQIPQ--PNLYTWNTLIR-AYSSSDEP 104 (258)
Q Consensus 33 ~~~~~~a~~~~~~m~~~---~-~~~~~~~-~~~li~~~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~li~-~~~~~g~~ 104 (258)
.++.++..+++.++... | ..++.++ |..++-+....+ +.+.|...++++.. |++.---.|=. -+-..|++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~--~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTG--RDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhch
Confidence 45778888888888753 4 6667664 566666667778 89999988887653 32221111111 12345889
Q ss_pred hhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 038429 105 IQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVFVMI 180 (258)
Q Consensus 105 ~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 180 (258)
++|+++++.. ...+ +-|..++--=+...-..|+--+|.+-+... ..|...|--+-..|...|++++|.-.++++
T Consensus 103 ~~A~e~y~~l-L~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESL-LEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHH-hccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 9999999999 5444 455666654444444444444444333333 899999999999999999999999999987
Q ss_pred C--CCChh-hHHHHHHHH---HcCCChHHHHHHHHHHHHc
Q 038429 181 G--KKDVV-SWNSMISGF---VEGGFFEKAIELYREMEVE 214 (258)
Q Consensus 181 ~--~~~~~-~~~~li~~~---~~~g~~~~a~~~~~~m~~~ 214 (258)
. +|... -|..+-+.+ +...+.+-+.++|.+-.+.
T Consensus 181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 5 56333 333443333 3344567788888877664
No 153
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.09 Score=43.78 Aligned_cols=155 Identities=7% Similarity=-0.036 Sum_probs=91.4
Q ss_pred CChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcch-HHHHHHHhcCcCCcchhhhhhhcc----cCchhHHHHH
Q 038429 86 PNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFT-LPFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSL 160 (258)
Q Consensus 86 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~l 160 (258)
-|+.....+.+.+...|+.++|+..|+.. +.. -|+..+ ...-.-.+.+.|+.+....+...+ .-+...|-.-
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~-~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~ 306 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSST-LCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVH 306 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHH-hhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhh
Confidence 57788889999999999999999999877 322 233221 111122235566666655555444 2233334333
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCChhhHHHH---HHHHHcCCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHhccCCh
Q 038429 161 IHFYAVCGDLAMAYCVFVMIGKKDVVSWNSM---ISGFVEGGFFEKAIELYREMEVENVKP-DEVTMVVVLSACAKKRDL 236 (258)
Q Consensus 161 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~l---i~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~g~~ 236 (258)
........+++.|+.+-+...+.|......+ -..+...|+.++|.-.|+..+. +.| +...|.-|+.+|...|.+
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchH
Confidence 4444455666777766666554333322222 2455566777777777766554 333 556777777777777777
Q ss_pred hHHHHHHHH
Q 038429 237 EFGIWVSSH 245 (258)
Q Consensus 237 ~~a~~~~~~ 245 (258)
.+|..+-+.
T Consensus 385 kEA~~~An~ 393 (564)
T KOG1174|consen 385 KEANALANW 393 (564)
T ss_pred HHHHHHHHH
Confidence 776655443
No 154
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.77 E-value=0.021 Score=41.17 Aligned_cols=101 Identities=11% Similarity=-0.049 Sum_probs=65.2
Q ss_pred HHhccCC-CCChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc----cC
Q 038429 78 KMFDQIP-QPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF----ED 152 (258)
Q Consensus 78 ~~~~~m~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~ 152 (258)
..+..+. +.+....-.+-.-+...|++++|..+|+.. -... +-+..-|-.|--++-..|++++|...+... +.
T Consensus 24 ~~l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L-~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d 101 (157)
T PRK15363 24 RMLLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLL-TIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID 101 (157)
T ss_pred HHHHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 3334444 344444455555666777777777777766 2221 112333455666666667777777777776 56
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 038429 153 DLVISNSLIHFYAVCGDLAMAYCVFVMI 180 (258)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~a~~~~~~m 180 (258)
|...+-.+-.++...|+.+.|.+.|+..
T Consensus 102 dp~~~~~ag~c~L~lG~~~~A~~aF~~A 129 (157)
T PRK15363 102 APQAPWAAAECYLACDNVCYAIKALKAV 129 (157)
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6777888888899999999999888754
No 155
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.77 E-value=0.12 Score=44.93 Aligned_cols=212 Identities=10% Similarity=-0.014 Sum_probs=127.0
Q ss_pred CcccccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCCCChhhHHHHHHHHh--cCCChhh
Q 038429 29 HPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYS--SSDEPIQ 106 (258)
Q Consensus 29 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~--~~g~~~~ 106 (258)
...+.+++++|.+..+.+...+ +-+...+..=+-+..+.+ .+++|+.+.+.-........-.+=.+|| +.+..++
T Consensus 21 ~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~--ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~De 97 (652)
T KOG2376|consen 21 RHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLD--KYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDE 97 (652)
T ss_pred HhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhh--HHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHH
Confidence 3455678999999999998887 444555555555677777 9999997766543211111111234444 6788899
Q ss_pred HHHHHHHhHhcCCCCCC-cchHHHHHHHhcCcCCcchhhhhhhcc-cCchhHHHHHHHHHHhc-CCHHHHHHHHHhcCCC
Q 038429 107 SFMIFLQLVYNSPYFPN-EFTLPFVIKAAARPVQFRVGQAIHGMF-EDDLVISNSLIHFYAVC-GDLAMAYCVFVMIGKK 183 (258)
Q Consensus 107 a~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~ 183 (258)
|+..++.. .++ ..+...-...+-+.|++++|..+|+.+ ..+...+...+.+-+-. +..-.+. +.+.....
T Consensus 98 alk~~~~~------~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~-~~q~v~~v 170 (652)
T KOG2376|consen 98 ALKTLKGL------DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ-LLQSVPEV 170 (652)
T ss_pred HHHHHhcc------cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH-HHHhccCC
Confidence 98887744 222 235555566678899999999999999 44444444333332211 1111121 34444333
Q ss_pred ChhhHHHHHH---HHHcCCChHHHHHHHHHHHHcC-------------CCCChhh-HHHHHHHHhccCChhHHHHHHHHH
Q 038429 184 DVVSWNSMIS---GFVEGGFFEKAIELYREMEVEN-------------VKPDEVT-MVVVLSACAKKRDLEFGIWVSSHI 246 (258)
Q Consensus 184 ~~~~~~~li~---~~~~~g~~~~a~~~~~~m~~~~-------------~~p~~~t-~~~li~~~~~~g~~~~a~~~~~~m 246 (258)
...+|..+-. .+...|++.+|+++++....-+ +.-+..+ -..|.-.+-..|+.++|..++...
T Consensus 171 ~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~ 250 (652)
T KOG2376|consen 171 PEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDI 250 (652)
T ss_pred CcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 3445554442 3456789999999888762211 1111112 223444556789999999999888
Q ss_pred HHcC
Q 038429 247 EKNG 250 (258)
Q Consensus 247 ~~~g 250 (258)
.+.+
T Consensus 251 i~~~ 254 (652)
T KOG2376|consen 251 IKRN 254 (652)
T ss_pred HHhc
Confidence 8765
No 156
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.74 E-value=0.019 Score=47.90 Aligned_cols=87 Identities=13% Similarity=0.022 Sum_probs=73.7
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHhccCCh
Q 038429 161 IHFYAVCGDLAMAYCVFVMIGK--K-DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKP-DEVTMVVVLSACAKKRDL 236 (258)
Q Consensus 161 i~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~g~~ 236 (258)
...+...|++++|.+.|.+..+ | +...|..+-.+|...|++++|+..+++.... .| +...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCCH
Confidence 3556678999999999998764 3 6678888889999999999999999998875 34 456788888999999999
Q ss_pred hHHHHHHHHHHHc
Q 038429 237 EFGIWVSSHIEKN 249 (258)
Q Consensus 237 ~~a~~~~~~m~~~ 249 (258)
++|...|++..+.
T Consensus 87 ~eA~~~~~~al~l 99 (356)
T PLN03088 87 QTAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988764
No 157
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.72 E-value=0.0085 Score=36.26 Aligned_cols=55 Identities=7% Similarity=0.106 Sum_probs=35.4
Q ss_pred HHHHcCCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHhccCChhHHHHHHHHHHHc
Q 038429 193 SGFVEGGFFEKAIELYREMEVENVKP-DEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249 (258)
Q Consensus 193 ~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 249 (258)
..+...|++++|...|++..+.. | +...+..+...+.+.|++++|...|++..+.
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45566677777777777766653 4 4455666666777777777777777776543
No 158
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.68 E-value=0.012 Score=42.15 Aligned_cols=54 Identities=15% Similarity=0.196 Sum_probs=23.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHH
Q 038429 158 NSLIHFYAVCGDLAMAYCVFVMIGK--K-DVVSWNSMISGFVEGGFFEKAIELYREM 211 (258)
Q Consensus 158 ~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m 211 (258)
..++..+...|++++|.++...... | |...|..+|.+|...|+..+|.++|+++
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 3344444445555555555444432 2 3344555555555555555555544443
No 159
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.66 E-value=0.0027 Score=38.82 Aligned_cols=47 Identities=15% Similarity=0.152 Sum_probs=21.2
Q ss_pred cCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHH
Q 038429 167 CGDLAMAYCVFVMIGK--K-DVVSWNSMISGFVEGGFFEKAIELYREMEV 213 (258)
Q Consensus 167 ~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 213 (258)
.|++++|.+.|+...+ | +...+-.+..+|.+.|++++|..+++++..
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4445555555544422 2 333444444555555555555555544443
No 160
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.63 E-value=0.083 Score=43.21 Aligned_cols=123 Identities=13% Similarity=0.086 Sum_probs=94.7
Q ss_pred hHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcccCchhHHHHHHHHHHhcCC
Q 038429 90 TWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGD 169 (258)
Q Consensus 90 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~ 169 (258)
+.+.-|.-+...|+...|.++-.+. . .|+-.-|...+.+++..++|++-+.+-.. ..++.-|--.+.+|.+.|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F----k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s-kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF----K-VPDKRFWWLKIKALAENKDWDELEKFAKS-KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc----C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-CCCCCChHHHHHHHHHCCC
Confidence 4566677888889988888887666 2 47888899999999999999988776543 5567889999999999999
Q ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 038429 170 LAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230 (258)
Q Consensus 170 ~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~ 230 (258)
..+|..+... .++..-+..|.+.|++.+|.+.--+. -|......+.+.+
T Consensus 253 ~~eA~~yI~k------~~~~~rv~~y~~~~~~~~A~~~A~~~------kd~~~L~~i~~~~ 301 (319)
T PF04840_consen 253 KKEASKYIPK------IPDEERVEMYLKCGDYKEAAQEAFKE------KDIDLLKQILKRC 301 (319)
T ss_pred HHHHHHHHHh------CChHHHHHHHHHCCCHHHHHHHHHHc------CCHHHHHHHHHHC
Confidence 9999999887 44577888999999999997764332 2444444444444
No 161
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.58 E-value=0.26 Score=45.75 Aligned_cols=88 Identities=16% Similarity=0.152 Sum_probs=50.8
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC--ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 038429 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKK--DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSA 229 (258)
Q Consensus 152 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~ 229 (258)
.|+..|.-+++...+.|++++-.+.+...++. ....=+.||-+|++.++..+.++++ ..||......+-+-
T Consensus 1131 dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdr 1203 (1666)
T KOG0985|consen 1131 DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDR 1203 (1666)
T ss_pred CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHH
Confidence 34455666666666666666666655433321 2222245666666666655544433 34666666777777
Q ss_pred HhccCChhHHHHHHHHH
Q 038429 230 CAKKRDLEFGIWVSSHI 246 (258)
Q Consensus 230 ~~~~g~~~~a~~~~~~m 246 (258)
|...|.++.|.-++..+
T Consensus 1204 cf~~~~y~aAkl~y~~v 1220 (1666)
T KOG0985|consen 1204 CFEEKMYEAAKLLYSNV 1220 (1666)
T ss_pred HhhhhhhHHHHHHHHHh
Confidence 77777777776666544
No 162
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=96.57 E-value=0.17 Score=43.58 Aligned_cols=141 Identities=12% Similarity=0.067 Sum_probs=77.9
Q ss_pred hhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc------cCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 038429 105 IQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF------EDDLVISNSLIHFYAVCGDLAMAYCVFV 178 (258)
Q Consensus 105 ~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~------~~~~~~~~~li~~~~~~g~~~~a~~~~~ 178 (258)
+.....+++......+.|+ .+|-..++..-+...+..|..+|... .-++++++++|.-|| .++.+-|.++|+
T Consensus 348 ~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 348 KKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 4444444444222333333 24555555555555555555555555 225556666666555 345566666665
Q ss_pred hcCC--CChhh-HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCh--hhHHHHHHHHhccCChhHHHHHHHHHH
Q 038429 179 MIGK--KDVVS-WNSMISGFVEGGFFEKAIELYREMEVENVKPDE--VTMVVVLSACAKKRDLEFGIWVSSHIE 247 (258)
Q Consensus 179 ~m~~--~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~t~~~li~~~~~~g~~~~a~~~~~~m~ 247 (258)
.=.+ +|... -+..+.-+...|+-..+..+|++....++.||. ..|..+|.--+..|++..+.++-+++.
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRF 499 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 4322 23332 234555556666666666777776666555543 457777777677777776666666543
No 163
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.54 E-value=0.04 Score=47.39 Aligned_cols=201 Identities=14% Similarity=0.011 Sum_probs=135.8
Q ss_pred hhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC------------CChhhHHHHHHHHhcCCCh
Q 038429 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ------------PNLYTWNTLIRAYSSSDEP 104 (258)
Q Consensus 37 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~------------~~~~~~~~li~~~~~~g~~ 104 (258)
..|...+.+..+.. +-+....-.|.-.|...| .-..|...++.=.. .+...=+. ..+.....+
T Consensus 336 ~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg--~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l 410 (579)
T KOG1125|consen 336 QNAISALRRCLELD-PTNLEALMALAVSYTNEG--LQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHL 410 (579)
T ss_pred HHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhh--hHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHH
Confidence 44455555555444 334566777777777777 77777777653210 01110000 233333445
Q ss_pred hhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 038429 105 IQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVFVMI 180 (258)
Q Consensus 105 ~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 180 (258)
....++|-++.+..+.++|......|--.|--.|.++.|..+|+.. +-|..+||-|--.++...+.++|+..|.+.
T Consensus 411 ~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rA 490 (579)
T KOG1125|consen 411 AHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRA 490 (579)
T ss_pred HHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHH
Confidence 6777788777677777788888998888899999999999999998 667789999999999999999999999988
Q ss_pred CC--CC-h-hhHHHHHHHHHcCCChHHHHHHHHHH---HHcCC------CCChhhHHHHHHHHhccCChhHHHHHH
Q 038429 181 GK--KD-V-VSWNSMISGFVEGGFFEKAIELYREM---EVENV------KPDEVTMVVVLSACAKKRDLEFGIWVS 243 (258)
Q Consensus 181 ~~--~~-~-~~~~~li~~~~~~g~~~~a~~~~~~m---~~~~~------~p~~~t~~~li~~~~~~g~~~~a~~~~ 243 (258)
.+ |+ + .=||.-| +|...|.+++|...|-+. ...+- .++...|..|=.++.-.++.|.+.+..
T Consensus 491 LqLqP~yVR~RyNlgI-S~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 491 LQLQPGYVRVRYNLGI-SCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred HhcCCCeeeeehhhhh-hhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 65 63 2 3355444 578889999998877553 33321 223456777766777677777555443
No 164
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.52 E-value=0.071 Score=39.37 Aligned_cols=79 Identities=16% Similarity=0.087 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC----hhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-ChhhHHHHH
Q 038429 155 VISNSLIHFYAVCGDLAMAYCVFVMIGK--KD----VVSWNSMISGFVEGGFFEKAIELYREMEVENVKP-DEVTMVVVL 227 (258)
Q Consensus 155 ~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~t~~~li 227 (258)
..+..+...|...|++++|...|++..+ |+ ...+..+...+.+.|++++|...+++.... .| +...+..+.
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg 113 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHH
Confidence 3455555666666666666666665532 21 235566666666677777777766666553 23 233444445
Q ss_pred HHHhccCC
Q 038429 228 SACAKKRD 235 (258)
Q Consensus 228 ~~~~~~g~ 235 (258)
..+...|+
T Consensus 114 ~~~~~~g~ 121 (172)
T PRK02603 114 VIYHKRGE 121 (172)
T ss_pred HHHHHcCC
Confidence 55555444
No 165
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.52 E-value=0.01 Score=42.52 Aligned_cols=69 Identities=17% Similarity=0.205 Sum_probs=50.4
Q ss_pred hhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHH-----HcCCcccc
Q 038429 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIE-----KNGIKMDL 255 (258)
Q Consensus 186 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~-----~~g~~p~~ 255 (258)
.....++..+...|++++|..+.+++.... +.|...|..++.++...|+...|.++|+.+. +.|+.|+.
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 456667778888999999999999888753 3477889999999999999999999998774 46888864
No 166
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.51 E-value=0.068 Score=46.79 Aligned_cols=129 Identities=11% Similarity=-0.087 Sum_probs=88.1
Q ss_pred CCCCCcchHHHHHHHhcCcC-----Ccchhhhhhhcc---cCc-hhHHHHHHHHHHhc--------CCHHHHHHHHHhcC
Q 038429 119 PYFPNEFTLPFVIKAAARPV-----QFRVGQAIHGMF---EDD-LVISNSLIHFYAVC--------GDLAMAYCVFVMIG 181 (258)
Q Consensus 119 ~~~p~~~~~~~ll~~~~~~~-----~~~~a~~~~~~~---~~~-~~~~~~li~~~~~~--------g~~~~a~~~~~~m~ 181 (258)
..+.|..+|...+.+..... +...|..+|+.. .|+ ...|..+..+|... ++...+.+......
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 44567788888888854432 255788888877 443 44555544444322 12334444444321
Q ss_pred -----CCChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHc
Q 038429 182 -----KKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249 (258)
Q Consensus 182 -----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 249 (258)
..+...|..+--.+...|++++|...+++....+ |+...|..+.+.+...|+.++|.+.+++....
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 1244667777666667799999999999988764 78888999999999999999999999887654
No 167
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.48 E-value=0.38 Score=43.80 Aligned_cols=196 Identities=8% Similarity=0.006 Sum_probs=101.7
Q ss_pred ccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC-------------CChhhHHHHHHHHh
Q 038429 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ-------------PNLYTWNTLIRAYS 99 (258)
Q Consensus 33 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~-------------~~~~~~~~li~~~~ 99 (258)
.|+.+.|.+-...++ +..+|..+.+.|.+.. +++-|.-.+..|.. ++ ..=......-.
T Consensus 741 iG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~--RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAi 811 (1416)
T KOG3617|consen 741 IGSMDAAFKSIQFIK------SDSVWDNMASMCVKTR--RLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAI 811 (1416)
T ss_pred eccHHHHHHHHHHHh------hhHHHHHHHHHhhhhc--cccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHH
Confidence 455555544333322 4456667777777666 66666666655542 11 11111222223
Q ss_pred cCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc--cCchhHHHHHHHHHHhcCCHHHHHHHH
Q 038429 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF--EDDLVISNSLIHFYAVCGDLAMAYCVF 177 (258)
Q Consensus 100 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~ 177 (258)
+.|.+++|+.+|.+- ++ |..|=+.|-..|.|++|.++-+.- -.=..||.....-+-..++.+.|++.|
T Consensus 812 eLgMlEeA~~lYr~c-kR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~Aleyy 881 (1416)
T KOG3617|consen 812 ELGMLEEALILYRQC-KR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYY 881 (1416)
T ss_pred HHhhHHHHHHHHHHH-HH---------HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHH
Confidence 445666666666555 32 333334455566666666655444 112235555555555566777777766
Q ss_pred HhcCCC-----------------------ChhhHHHHHHHHHcCCChHHHHHHHHHHHHc--------------------
Q 038429 178 VMIGKK-----------------------DVVSWNSMISGFVEGGFFEKAIELYREMEVE-------------------- 214 (258)
Q Consensus 178 ~~m~~~-----------------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------------------- 214 (258)
+....| |...|.---.-+-..|+.+.|+.+|+..+..
T Consensus 882 EK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA 961 (1416)
T KOG3617|consen 882 EKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIA 961 (1416)
T ss_pred HhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHH
Confidence 655421 2211111111122345666666666544221
Q ss_pred CCCCChhhHHHHHHHHhccCChhHHHHHHHHHH
Q 038429 215 NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIE 247 (258)
Q Consensus 215 ~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 247 (258)
.-.-|....-+|-+.|-..|++.+|..+|.+..
T Consensus 962 ~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 962 EESGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 011356667777888888888888887776543
No 168
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.47 E-value=0.035 Score=38.37 Aligned_cols=28 Identities=11% Similarity=0.025 Sum_probs=18.7
Q ss_pred HHHHHhcCCChhhHHHHHHHhHhcCCCCC
Q 038429 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFP 122 (258)
Q Consensus 94 li~~~~~~g~~~~a~~~~~~m~~~~~~~p 122 (258)
+-.++-..|+.++|+.+|++. ...|...
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~A-l~~gL~~ 34 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRA-LAAGLSG 34 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHH-HHcCCCc
Confidence 445566677888888888877 5555443
No 169
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=96.41 E-value=0.072 Score=48.99 Aligned_cols=153 Identities=12% Similarity=0.040 Sum_probs=102.0
Q ss_pred hhhhhhhhhhccCCCChHHHHHHhccCCC---CChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHH--HH
Q 038429 57 SASKLFTPCALSTFSSLEYARKMFDQIPQ---PNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPF--VI 131 (258)
Q Consensus 57 ~~~~li~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~--ll 131 (258)
.|..|-..|.... +...|...|+..-+ .+..++......|++..+++.|+.+.-...++. +.-...++. .-
T Consensus 494 af~~LG~iYrd~~--Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka--~a~~~k~nW~~rG 569 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSD--DMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKA--PAFACKENWVQRG 569 (1238)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhc--hHHHHHhhhhhcc
Confidence 4667777777776 77778888876544 567788999999999999999998843331111 111122222 22
Q ss_pred HHhcCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-ChhhHHHHHH--HHHcCCChHHH
Q 038429 132 KAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKK-DVVSWNSMIS--GFVEGGFFEKA 204 (258)
Q Consensus 132 ~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~li~--~~~~~g~~~~a 204 (258)
-.+.+.+++..+..-|+.. +.|...|..+..+|.++|++..|.++|.+...- ...+|...-. .-+..|...+|
T Consensus 570 ~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkea 649 (1238)
T KOG1127|consen 570 PYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEA 649 (1238)
T ss_pred ccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHH
Confidence 2345566666666656555 778889999999999999999999999766442 2233333322 23667888888
Q ss_pred HHHHHHHHH
Q 038429 205 IELYREMEV 213 (258)
Q Consensus 205 ~~~~~~m~~ 213 (258)
...+.....
T Consensus 650 ld~l~~ii~ 658 (1238)
T KOG1127|consen 650 LDALGLIIY 658 (1238)
T ss_pred HHHHHHHHH
Confidence 887776543
No 170
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.38 E-value=0.06 Score=42.77 Aligned_cols=95 Identities=15% Similarity=-0.053 Sum_probs=69.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCh----hhHHHHHHHHHcCCChHHHHHHHHHHHHcC--CCCChhhHHHH
Q 038429 155 VISNSLIHFYAVCGDLAMAYCVFVMIGK--KDV----VSWNSMISGFVEGGFFEKAIELYREMEVEN--VKPDEVTMVVV 226 (258)
Q Consensus 155 ~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~t~~~l 226 (258)
..|+..+..+.+.|++++|...|+...+ |+. ..+-.+-..|...|++++|...|+.+...- -......+-.+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 4566666666777999999999988765 533 466677788899999999999999987641 11123344445
Q ss_pred HHHHhccCChhHHHHHHHHHHHc
Q 038429 227 LSACAKKRDLEFGIWVSSHIEKN 249 (258)
Q Consensus 227 i~~~~~~g~~~~a~~~~~~m~~~ 249 (258)
...+...|+.+.|..+++.+.+.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 66677889999999999988764
No 171
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.35 E-value=0.095 Score=38.51 Aligned_cols=91 Identities=14% Similarity=-0.006 Sum_probs=65.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC----hhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC-hhhHHHH
Q 038429 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGK--KD----VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPD-EVTMVVV 226 (258)
Q Consensus 154 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~t~~~l 226 (258)
...|..+...+...|++++|...|+.... |+ ..+|..+-..+...|+.++|+..+++.... .|+ ..++..+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~--~~~~~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER--NPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHH
Confidence 45667777788888999999999887642 22 247888888889999999999999887764 333 3455666
Q ss_pred HHHHh-------ccCChhHHHHHHHHH
Q 038429 227 LSACA-------KKRDLEFGIWVSSHI 246 (258)
Q Consensus 227 i~~~~-------~~g~~~~a~~~~~~m 246 (258)
...+. ..|+++.|...+++.
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 66666 778888666666543
No 172
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.31 E-value=0.013 Score=35.66 Aligned_cols=50 Identities=8% Similarity=0.064 Sum_probs=32.7
Q ss_pred ccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC
Q 038429 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ 85 (258)
Q Consensus 33 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~ 85 (258)
.|++++|.++++.+.+.. +-+...+-.+..+|.+.| ++++|..+++.+..
T Consensus 4 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g--~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQG--QYDEAEELLERLLK 53 (68)
T ss_dssp TTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT---HHHHHHHHHCCHG
T ss_pred ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHH
Confidence 466777777777776665 335666666777777777 77777777776654
No 173
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.28 E-value=0.011 Score=37.30 Aligned_cols=61 Identities=16% Similarity=0.200 Sum_probs=39.4
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHHc--CCC---CC-hhhHHHHHHHHhccCChhHHHHHHHHHH
Q 038429 187 SWNSMISGFVEGGFFEKAIELYREMEVE--NVK---PD-EVTMVVVLSACAKKRDLEFGIWVSSHIE 247 (258)
Q Consensus 187 ~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~---p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~ 247 (258)
+|+.+-..|...|++++|+..|++..+. ... |+ ..++..+-..+...|++++|.+.+++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556666666666666666666665432 111 22 4567778888888888888888888754
No 174
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.27 E-value=0.4 Score=37.65 Aligned_cols=57 Identities=9% Similarity=0.068 Sum_probs=45.1
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHc--CCCCChhhHHHHHHHHhccCChhHHHHHHHHHH
Q 038429 191 MISGFVEGGFFEKAIELYREMEVE--NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIE 247 (258)
Q Consensus 191 li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 247 (258)
+..-|.+.|.+..|..-++.+.+. +.+........++.+|...|..++|..+...+.
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 445578889999999999998875 333455667788999999999999998877654
No 175
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.18 E-value=0.012 Score=37.10 Aligned_cols=58 Identities=21% Similarity=0.223 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC---------CC-hhhHHHHHHHHHcCCChHHHHHHHHHHH
Q 038429 155 VISNSLIHFYAVCGDLAMAYCVFVMIGK---------KD-VVSWNSMISGFVEGGFFEKAIELYREME 212 (258)
Q Consensus 155 ~~~~~li~~~~~~g~~~~a~~~~~~m~~---------~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~ 212 (258)
.+|+.+-..|.+.|++++|.+.|++..+ |+ ..+++.+-..|...|+.++|+.++++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4788888999999999999988876542 22 4578888899999999999999988754
No 176
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.16 E-value=0.019 Score=34.63 Aligned_cols=55 Identities=18% Similarity=0.194 Sum_probs=44.6
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 038429 160 LIHFYAVCGDLAMAYCVFVMIGK--K-DVVSWNSMISGFVEGGFFEKAIELYREMEVE 214 (258)
Q Consensus 160 li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 214 (258)
+...+.+.|++++|.+.|+...+ | +...+..+-..+...|++++|..+|++..+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45677889999999999998865 4 5567778888899999999999999988764
No 177
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.14 E-value=0.53 Score=37.75 Aligned_cols=164 Identities=8% Similarity=-0.099 Sum_probs=108.3
Q ss_pred CCCCceeeecCCCccCcccccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC--------
Q 038429 14 HPNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ-------- 85 (258)
Q Consensus 14 ~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~-------- 85 (258)
.|+..+...++......-+.|+.+.|.+=|....+.+--.....||..+..|.+ + +.+.|.+...++.+
T Consensus 138 lp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~-~--qyasALk~iSEIieRG~r~HPE 214 (459)
T KOG4340|consen 138 LPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSS-R--QYASALKHISEIIERGIRQHPE 214 (459)
T ss_pred ccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhh-h--hHHHHHHHHHHHHHhhhhcCCc
Confidence 455555666666556777889999999999988876444457788877766654 4 78888777655421
Q ss_pred ---------CChh---------------hHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcc
Q 038429 86 ---------PNLY---------------TWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFR 141 (258)
Q Consensus 86 ---------~~~~---------------~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~ 141 (258)
+|+. ++|.-...+-+.|+.+.|.+.+-+|-.+..-..|+.|...+.-.=. .+++.
T Consensus 215 lgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~ 293 (459)
T KOG4340|consen 215 LGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPT 293 (459)
T ss_pred cCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCcc
Confidence 2221 2444444456778999999998888444445567778765432222 23344
Q ss_pred hhhhhhhcc----cCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 038429 142 VGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIG 181 (258)
Q Consensus 142 ~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 181 (258)
.+.+-+..+ +-...|+..++-.|||..-++.|-+++.+=.
T Consensus 294 ~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAEn~ 337 (459)
T KOG4340|consen 294 EGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAENA 337 (459)
T ss_pred ccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhhCc
Confidence 333333333 5556799999999999999999999987643
No 178
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.12 E-value=0.048 Score=49.21 Aligned_cols=146 Identities=10% Similarity=0.103 Sum_probs=92.3
Q ss_pred CCChhhHHHHHH--HHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc------------
Q 038429 85 QPNLYTWNTLIR--AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF------------ 150 (258)
Q Consensus 85 ~~~~~~~~~li~--~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~------------ 150 (258)
.-|..|-..+++ .|...|+.+.|.+-.+-+ + +...|..|.+.|.+..+++.|+-++..|
T Consensus 723 ~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~I-k------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a 795 (1416)
T KOG3617|consen 723 NCDESTRKAMLDFSFYVTIGSMDAAFKSIQFI-K------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRA 795 (1416)
T ss_pred ccCHHHHHhhhceeEEEEeccHHHHHHHHHHH-h------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHH
Confidence 346666666665 456678888887777666 3 3346888888888888888777777766
Q ss_pred --cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 038429 151 --EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLS 228 (258)
Q Consensus 151 --~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~ 228 (258)
.++ .+=.-+.-.....|.+++|+.+|.+.++ |..|=+.|...|+|++|.++-+.=..-.+ ..||..-..
T Consensus 796 ~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~ 866 (1416)
T KOG3617|consen 796 QQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAK 866 (1416)
T ss_pred HhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHH
Confidence 222 2222222233467888888888887654 44555667778888888877654322222 235555555
Q ss_pred HHhccCChhHHHHHHHHH
Q 038429 229 ACAKKRDLEFGIWVSSHI 246 (258)
Q Consensus 229 ~~~~~g~~~~a~~~~~~m 246 (258)
-+...+|++.|.+.|++-
T Consensus 867 ~Lear~Di~~AleyyEK~ 884 (1416)
T KOG3617|consen 867 YLEARRDIEAALEYYEKA 884 (1416)
T ss_pred HHHhhccHHHHHHHHHhc
Confidence 555667777777777643
No 179
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.10 E-value=0.059 Score=47.15 Aligned_cols=135 Identities=13% Similarity=-0.031 Sum_probs=79.8
Q ss_pred CCChhhHHHHHHHHhcCC-----ChhhHHHHHHHhHhcCCCCCCc-chHHHHHHHhcCc--------CCcchhhhhhhcc
Q 038429 85 QPNLYTWNTLIRAYSSSD-----EPIQSFMIFLQLVYNSPYFPNE-FTLPFVIKAAARP--------VQFRVGQAIHGMF 150 (258)
Q Consensus 85 ~~~~~~~~~li~~~~~~g-----~~~~a~~~~~~m~~~~~~~p~~-~~~~~ll~~~~~~--------~~~~~a~~~~~~~ 150 (258)
..|..+|...+++..... +.+.|..+|++... . .|+- ..|..+..++... .++..+.......
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~-l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK-S--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-h--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 356666777666654322 25567777766622 1 2332 2233222221110 1122333333221
Q ss_pred ------cCchhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhh
Q 038429 151 ------EDDLVISNSLIHFYAVCGDLAMAYCVFVMIG--KKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVT 222 (258)
Q Consensus 151 ------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t 222 (258)
+.+...|..+--.....|++++|...+++.. +|+...|..+-..+...|+.++|.+.+++... +.|...|
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~pt 488 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGENT 488 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCch
Confidence 3344566666555556789999999998765 36777888888888999999999998887665 4566666
Q ss_pred HH
Q 038429 223 MV 224 (258)
Q Consensus 223 ~~ 224 (258)
|.
T Consensus 489 ~~ 490 (517)
T PRK10153 489 LY 490 (517)
T ss_pred HH
Confidence 53
No 180
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.09 E-value=0.18 Score=35.21 Aligned_cols=68 Identities=15% Similarity=0.092 Sum_probs=49.4
Q ss_pred ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHcCCc
Q 038429 184 DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIK 252 (258)
Q Consensus 184 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 252 (258)
+..-++..+..++..|+-+.-.++..++.+ +-.++....--+-.+|.+.|+..++.+++.+.-+.|+.
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 334566778888889999988889888765 34578888888999999999999999999999988864
No 181
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.09 E-value=0.04 Score=43.47 Aligned_cols=47 Identities=9% Similarity=-0.037 Sum_probs=36.5
Q ss_pred ChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCc-chhhhhhhcc
Q 038429 103 EPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQF-RVGQAIHGMF 150 (258)
Q Consensus 103 ~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~~ 150 (258)
+-+-++.++++| ...|+.||-.+-..|++++++.+.. .+..++.-.|
T Consensus 138 QQ~C~I~vLeqM-E~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 138 QQNCAIKVLEQM-EWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred hhhHHHHHHHHH-HHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 346678999999 9999999999999999999998764 2333443333
No 182
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.02 E-value=0.3 Score=38.40 Aligned_cols=165 Identities=12% Similarity=-0.007 Sum_probs=114.9
Q ss_pred hhhhhhhhhccCCCChHHHHHHhccCCC----------CChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchH
Q 038429 58 ASKLFTPCALSTFSSLEYARKMFDQIPQ----------PNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL 127 (258)
Q Consensus 58 ~~~li~~~~~~~~~~~~~a~~~~~~m~~----------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~ 127 (258)
+++|++.+.-.. -+++-...++.-.. +-....+.++..+.-.|.+.-...++++. .++.-+.++...
T Consensus 139 qesLdRl~~L~~--~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~v-i~~~~e~~p~L~ 215 (366)
T KOG2796|consen 139 QESLDRLHKLKT--VVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSV-IKYYPEQEPQLL 215 (366)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHH-HHhCCcccHHHH
Confidence 677777776655 55555555554332 23445677888888888888889999998 666667777778
Q ss_pred HHHHHHhcCcCCcchhhhhhhcc-----cCchhHHHHHHHH-----HHhcCCHHHHHHHHHhcCCC---ChhhHHHHHHH
Q 038429 128 PFVIKAAARPVQFRVGQAIHGMF-----EDDLVISNSLIHF-----YAVCGDLAMAYCVFVMIGKK---DVVSWNSMISG 194 (258)
Q Consensus 128 ~~ll~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~li~~-----~~~~g~~~~a~~~~~~m~~~---~~~~~~~li~~ 194 (258)
+.|.+.-...||.+.|+..|+.. ..|..+.+.++.. |.-+.++..|...|.++... |...-|.=.-.
T Consensus 216 s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALc 295 (366)
T KOG2796|consen 216 SGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALC 295 (366)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHH
Confidence 88888889999999999999976 5556666655533 33467888999999877653 44444433333
Q ss_pred HHcCCChHHHHHHHHHHHHcCCCCChhhHHHHH
Q 038429 195 FVEGGFFEKAIELYREMEVENVKPDEVTMVVVL 227 (258)
Q Consensus 195 ~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li 227 (258)
..-.|+..+|.+.++.|... .|...+-++++
T Consensus 296 llYlg~l~DAiK~~e~~~~~--~P~~~l~es~~ 326 (366)
T KOG2796|consen 296 LLYLGKLKDALKQLEAMVQQ--DPRHYLHESVL 326 (366)
T ss_pred HHHHHHHHHHHHHHHHHhcc--CCccchhhhHH
Confidence 34457899999999999875 45555554333
No 183
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=95.95 E-value=0.65 Score=40.98 Aligned_cols=97 Identities=11% Similarity=0.008 Sum_probs=60.7
Q ss_pred CcccccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC-----------------------
Q 038429 29 HPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ----------------------- 85 (258)
Q Consensus 29 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~----------------------- 85 (258)
.+...|+-++|......-.+.. ..+.+.|..+--.+-... ++++|.+.|.....
T Consensus 50 ~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK--~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~ 126 (700)
T KOG1156|consen 50 TLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDK--KYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYE 126 (700)
T ss_pred hhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhh--hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhh
Confidence 5566777788877666666544 235556665554444445 67777666653321
Q ss_pred --------------CChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHH
Q 038429 86 --------------PNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLP 128 (258)
Q Consensus 86 --------------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~ 128 (258)
.....|-.+..+..-.|+...|..++++.++...-.|+...|.
T Consensus 127 ~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e 183 (700)
T KOG1156|consen 127 GYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYE 183 (700)
T ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHH
Confidence 2334577777777788889999999988844444456655543
No 184
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=95.94 E-value=0.13 Score=41.42 Aligned_cols=177 Identities=12% Similarity=0.096 Sum_probs=96.7
Q ss_pred hhhhhhhhhccCCCChHHHHHHhccCC-------C--CChhhHHHHHHHHhcCCChhhHHHHHHHhH---hcCCCCCC-c
Q 038429 58 ASKLFTPCALSTFSSLEYARKMFDQIP-------Q--PNLYTWNTLIRAYSSSDEPIQSFMIFLQLV---YNSPYFPN-E 124 (258)
Q Consensus 58 ~~~li~~~~~~~~~~~~~a~~~~~~m~-------~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~---~~~~~~p~-~ 124 (258)
|......|...+ ++++|...|.+.. . .-...|......|.+. ++++|+..+++.. .+.|-... .
T Consensus 38 y~~Aa~~fk~~~--~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA 114 (282)
T PF14938_consen 38 YEKAANCFKLAK--DWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAA 114 (282)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHH
T ss_pred HHHHHHHHHHHh--ccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 444444555555 5555555554321 1 1123344444444444 6666666665542 12221111 2
Q ss_pred chHHHHHHHhcCc-CCcchhhhhhhcc------cC----chhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----C----C
Q 038429 125 FTLPFVIKAAARP-VQFRVGQAIHGMF------ED----DLVISNSLIHFYAVCGDLAMAYCVFVMIGK-----K----D 184 (258)
Q Consensus 125 ~~~~~ll~~~~~~-~~~~~a~~~~~~~------~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~----~ 184 (258)
..+..+-..|-.. |+++.|...|+.. .. -..++..+...+.+.|++++|.++|++... + +
T Consensus 115 ~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~ 194 (282)
T PF14938_consen 115 KCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYS 194 (282)
T ss_dssp HHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchh
Confidence 2455556677777 8888888888777 11 123566778889999999999999987642 1 1
Q ss_pred hh-hHHHHHHHHHcCCChHHHHHHHHHHHHc--CCCCC--hhhHHHHHHHHhccCChhH
Q 038429 185 VV-SWNSMISGFVEGGFFEKAIELYREMEVE--NVKPD--EVTMVVVLSACAKKRDLEF 238 (258)
Q Consensus 185 ~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~--~~t~~~li~~~~~~g~~~~ 238 (258)
.. .|-..+-.+...|+...|...+++.... ++..+ ......||.+|-. ||.+.
T Consensus 195 ~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~-~D~e~ 252 (282)
T PF14938_consen 195 AKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEE-GDVEA 252 (282)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHT-T-CCC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHh-CCHHH
Confidence 11 2222333556678999999999998754 33322 2346677777654 44433
No 185
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=95.92 E-value=0.047 Score=33.32 Aligned_cols=62 Identities=21% Similarity=0.199 Sum_probs=38.7
Q ss_pred hhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHhccC-ChhHHHHHHHHHHH
Q 038429 185 VVSWNSMISGFVEGGFFEKAIELYREMEVENVKP-DEVTMVVVLSACAKKR-DLEFGIWVSSHIEK 248 (258)
Q Consensus 185 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~g-~~~~a~~~~~~m~~ 248 (258)
..+|..+-..+...|++++|+..|++..+.. | +...|..+-.++.+.| ++++|.+.+++..+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD--PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3455666666666677777777776666542 3 3445666666666666 57777777666554
No 186
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.90 E-value=0.41 Score=39.89 Aligned_cols=73 Identities=12% Similarity=0.062 Sum_probs=38.5
Q ss_pred hhhhhhhhccCCCChHHHHHHhccCCCC-------ChhhHHHHHHHHhc---CCChhhHHHHHHHhHhcCCCCCCcchHH
Q 038429 59 SKLFTPCALSTFSSLEYARKMFDQIPQP-------NLYTWNTLIRAYSS---SDEPIQSFMIFLQLVYNSPYFPNEFTLP 128 (258)
Q Consensus 59 ~~li~~~~~~~~~~~~~a~~~~~~m~~~-------~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~~p~~~~~~ 128 (258)
..++-+|-... +++...++++.+..+ ....--...-++.+ .|+.++|++++..+ ....-.+++.||.
T Consensus 145 ~~lllSyRdiq--dydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~-l~~~~~~~~d~~g 221 (374)
T PF13281_consen 145 INLLLSYRDIQ--DYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPV-LESDENPDPDTLG 221 (374)
T ss_pred HHHHHHhhhhh--hHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHH-HhccCCCChHHHH
Confidence 34444566666 677777777666542 11112223334445 66677777777664 2333345555665
Q ss_pred HHHHHh
Q 038429 129 FVIKAA 134 (258)
Q Consensus 129 ~ll~~~ 134 (258)
.+-..|
T Consensus 222 L~GRIy 227 (374)
T PF13281_consen 222 LLGRIY 227 (374)
T ss_pred HHHHHH
Confidence 555444
No 187
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.88 E-value=0.13 Score=43.46 Aligned_cols=64 Identities=11% Similarity=-0.087 Sum_probs=52.3
Q ss_pred cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCh----hhHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 038429 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK--KDV----VSWNSMISGFVEGGFFEKAIELYREMEVE 214 (258)
Q Consensus 151 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 214 (258)
+.+...|+.+-.+|.+.|++++|...|++..+ |+. .+|..+-.+|...|+.++|+..+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45667888999999999999999999987543 543 35888899999999999999999888775
No 188
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.88 E-value=1.2 Score=39.57 Aligned_cols=84 Identities=8% Similarity=-0.022 Sum_probs=35.6
Q ss_pred HHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc-cCchhHHHHHHHHHHhcCCHHHHHH
Q 038429 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF-EDDLVISNSLIHFYAVCGDLAMAYC 175 (258)
Q Consensus 97 ~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~ 175 (258)
.+.+.|++......|+...+...+.--...|...+.-....+-++.+..+++.. +.++..-+-.|..+++.+++++|-+
T Consensus 111 ~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~ 190 (835)
T KOG2047|consen 111 FLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQ 190 (835)
T ss_pred HHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHH
Confidence 333444444444444433233323223333444444444444444444444444 3333334444444555555555544
Q ss_pred HHHhc
Q 038429 176 VFVMI 180 (258)
Q Consensus 176 ~~~~m 180 (258)
.+...
T Consensus 191 ~la~v 195 (835)
T KOG2047|consen 191 RLATV 195 (835)
T ss_pred HHHHh
Confidence 44443
No 189
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.83 E-value=0.11 Score=46.25 Aligned_cols=124 Identities=8% Similarity=-0.083 Sum_probs=100.0
Q ss_pred HHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc-cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhh
Q 038429 109 MIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF-EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187 (258)
Q Consensus 109 ~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 187 (258)
.+.+.+..+.|..-..-+.+--+.-+...|+-..|+++-... -||-..|-.-+.+++..+++++-+++-+.++. +..
T Consensus 669 ~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskks--PIG 746 (829)
T KOG2280|consen 669 KLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKKS--PIG 746 (829)
T ss_pred HHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccCC--CCC
Confidence 344444445565666667888888888999999999999999 89999999999999999999999998887766 678
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHH
Q 038429 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVS 243 (258)
Q Consensus 188 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~ 243 (258)
|--.+++|.+.|+.++|..++-+.. +.. -.+.+|.+.|++.+|.++-
T Consensus 747 y~PFVe~c~~~~n~~EA~KYiprv~-----~l~----ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 747 YLPFVEACLKQGNKDEAKKYIPRVG-----GLQ----EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred chhHHHHHHhcccHHHHhhhhhccC-----ChH----HHHHHHHHhccHHHHHHHH
Confidence 8999999999999999999986532 111 5678888888888887654
No 190
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.81 E-value=0.2 Score=44.55 Aligned_cols=143 Identities=12% Similarity=0.091 Sum_probs=85.2
Q ss_pred hHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcccCchhHHHHHHHHHHhcCC
Q 038429 90 TWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGD 169 (258)
Q Consensus 90 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~ 169 (258)
+|+.+-..++....|++|.+.|..- | --...+.++.+..++++-+.+...++.+....-.+.+++.+.|.
T Consensus 798 A~r~ig~~fa~~~~We~A~~yY~~~----~------~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGM 867 (1189)
T KOG2041|consen 798 AFRNIGETFAEMMEWEEAAKYYSYC----G------DTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGM 867 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc----c------chHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhch
Confidence 3455555555555555555544332 1 01223455555555666666666667777788888999999999
Q ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCC-----------CChhhHHHHHHHHhccCChhH
Q 038429 170 LAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVK-----------PDEVTMVVVLSACAKKRDLEF 238 (258)
Q Consensus 170 ~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-----------p~~~t~~~li~~~~~~g~~~~ 238 (258)
-++|.+.|-+-..|- ..+..|...++|.+|.++-++..-..+. -+..+. -.|.-+.+.|.+-.
T Consensus 868 C~qAV~a~Lr~s~pk-----aAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~-eaIe~~Rka~~~~d 941 (1189)
T KOG2041|consen 868 CDQAVEAYLRRSLPK-----AAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHM-EAIEKDRKAGRHLD 941 (1189)
T ss_pred HHHHHHHHHhccCcH-----HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchH-HHHHHhhhcccchh
Confidence 999999887766663 3345566677787777776553221110 111111 23455677777777
Q ss_pred HHHHHHHHHH
Q 038429 239 GIWVSSHIEK 248 (258)
Q Consensus 239 a~~~~~~m~~ 248 (258)
|.+++.+|.+
T Consensus 942 aarll~qmae 951 (1189)
T KOG2041|consen 942 AARLLSQMAE 951 (1189)
T ss_pred HHHHHHHHhH
Confidence 7777777753
No 191
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.79 E-value=0.069 Score=42.43 Aligned_cols=95 Identities=14% Similarity=0.089 Sum_probs=63.5
Q ss_pred hcCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHcCCChHHHHH
Q 038429 134 AARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKK---DVVSWNSMISGFVEGGFFEKAIE 206 (258)
Q Consensus 134 ~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~a~~ 206 (258)
+.+.+++.+|...|... +.|.+-|..--.+|++.|.++.|++=-+...+- -..+|..|-.+|...|++++|++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~ 170 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIE 170 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHH
Confidence 34556666666666665 566677777777888888777777666555442 33467777777888888888887
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHH
Q 038429 207 LYREMEVENVKPDEVTMVVVLSAC 230 (258)
Q Consensus 207 ~~~~m~~~~~~p~~~t~~~li~~~ 230 (258)
.|++..+ +.|+..+|..=++..
T Consensus 171 aykKaLe--ldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 171 AYKKALE--LDPDNESYKSNLKIA 192 (304)
T ss_pred HHHhhhc--cCCCcHHHHHHHHHH
Confidence 7776554 567776665555443
No 192
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.79 E-value=0.49 Score=41.08 Aligned_cols=156 Identities=10% Similarity=-0.022 Sum_probs=104.6
Q ss_pred HHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcc-----hHHHHHHHhcCc----CCcchhhhhhhcc---cCchhHHH
Q 038429 91 WNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF-----TLPFVIKAAARP----VQFRVGQAIHGMF---EDDLVISN 158 (258)
Q Consensus 91 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~-----~~~~ll~~~~~~----~~~~~a~~~~~~~---~~~~~~~~ 158 (258)
...+++..+-.|+-+..++.+.+-.+..++.-... +|...+..++.. .+.+.++.+++.+ -|+...|.
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl 270 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFL 270 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHH
Confidence 45677788888999999999988744444443322 355555555443 4567788888888 57777765
Q ss_pred HH-HHHHHhcCCHHHHHHHHHhcCC-----C--ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 038429 159 SL-IHFYAVCGDLAMAYCVFVMIGK-----K--DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230 (258)
Q Consensus 159 ~l-i~~~~~~g~~~~a~~~~~~m~~-----~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~ 230 (258)
.. -+.+...|++++|.+.|+.... | ....+--+.-.+.-..+|++|...|.++.+.+- -+..+|.-+..+|
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~-WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK-WSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc-cHHHHHHHHHHHH
Confidence 54 4566678999999999996543 1 222233333446677899999999999998642 2333444333333
Q ss_pred -hccCCh-------hHHHHHHHHHH
Q 038429 231 -AKKRDL-------EFGIWVSSHIE 247 (258)
Q Consensus 231 -~~~g~~-------~~a~~~~~~m~ 247 (258)
...|+. ++|.++|.++.
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHHH
Confidence 346777 88888888774
No 193
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=95.77 E-value=0.026 Score=34.49 Aligned_cols=61 Identities=18% Similarity=0.158 Sum_probs=49.1
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHcCC-ChHHHHHHHHHHHH
Q 038429 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGK--K-DVVSWNSMISGFVEGG-FFEKAIELYREMEV 213 (258)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~ 213 (258)
+..+|..+-..+...|++++|+..|++..+ | +...|..+-.+|...| ++++|+..+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 456788888888999999999999987654 4 5667888888888888 68999998887655
No 194
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.73 E-value=0.15 Score=40.47 Aligned_cols=64 Identities=5% Similarity=-0.007 Sum_probs=50.6
Q ss_pred hHHHHHHhccCC--CCChhhHHHHHHHHhcC-----CChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCc
Q 038429 73 LEYARKMFDQIP--QPNLYTWNTLIRAYSSS-----DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARP 137 (258)
Q Consensus 73 ~~~a~~~~~~m~--~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~ 137 (258)
+-..+..|...+ ++|-.+|-+.+..|... +.++-....++.| ++.|+.-|..+|+.||+.+=+.
T Consensus 50 Lv~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m-~eyGVerDl~vYk~LlnvfPKg 120 (406)
T KOG3941|consen 50 LVHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYM-KEYGVERDLDVYKGLLNVFPKG 120 (406)
T ss_pred ccchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH-HHhcchhhHHHHHHHHHhCccc
Confidence 444566677665 58888999999888654 5677777888999 9999999999999999887664
No 195
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.61 E-value=0.068 Score=32.98 Aligned_cols=53 Identities=9% Similarity=0.003 Sum_probs=24.1
Q ss_pred HHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHH
Q 038429 195 FVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEK 248 (258)
Q Consensus 195 ~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 248 (258)
|.+.+++++|.++++++...+ +.+...+...-..+.+.|++++|.+.++...+
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 444455555555555544431 11223344444444455555555555554443
No 196
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.49 E-value=0.53 Score=39.87 Aligned_cols=140 Identities=14% Similarity=0.045 Sum_probs=107.9
Q ss_pred hhhHHHHHHHHhcCCChhhHHHHHHHhHhcCC-CCCCcchHHHHHHHhcCcCCcchhhhhhhcc---cCchh-HHHHHHH
Q 038429 88 LYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSP-YFPNEFTLPFVIKAAARPVQFRVGQAIHGMF---EDDLV-ISNSLIH 162 (258)
Q Consensus 88 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~---~~~~~-~~~~li~ 162 (258)
..+|+..|+...+..-++.|..+|-+. ++.+ +.+++..++++|..++. |+...|.++|+.- -||.. --+-.+.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~-rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~f~d~~~y~~kyl~ 474 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKL-RKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLKFPDSTLYKEKYLL 474 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHH-hccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHhCCCchHHHHHHHH
Confidence 456888899888888899999999999 7777 67888899999988764 6778888888876 44444 4466788
Q ss_pred HHHhcCCHHHHHHHHHhcCCC---C--hhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHh
Q 038429 163 FYAVCGDLAMAYCVFVMIGKK---D--VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231 (258)
Q Consensus 163 ~~~~~g~~~~a~~~~~~m~~~---~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~ 231 (258)
-+.+.++-+.|..+|+....+ + ...|..+|+-=..-|+...+..+=++|.+. -|-..+.......|.
T Consensus 475 fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry~ 546 (660)
T COG5107 475 FLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHHh
Confidence 888999999999999865542 2 457889998888889998888888887663 455555555555554
No 197
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=95.47 E-value=0.022 Score=40.64 Aligned_cols=125 Identities=9% Similarity=0.053 Sum_probs=86.5
Q ss_pred CcccccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCCCChhhHHHHHHHHhcCCChhhHH
Q 038429 29 HPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSF 108 (258)
Q Consensus 29 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~ 108 (258)
.+.+.+.+....++++.+...+...+....+.++..|++.+ +.+...++++.... .-...+++.|-+.|.++++.
T Consensus 16 ~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~--~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a~ 90 (143)
T PF00637_consen 16 AFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYD--PYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEAV 90 (143)
T ss_dssp HCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTT--TCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcC--CchHHHHHcccccc---cCHHHHHHHHHhcchHHHHH
Confidence 66667889999999999998877778999999999999998 88888888874433 44467888888888888888
Q ss_pred HHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcccCchhHHHHHHHHHHhcCC
Q 038429 109 MIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGD 169 (258)
Q Consensus 109 ~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~ 169 (258)
-++.++ ... ...+..+...++++.|.+..... ++...|..+++.|...++
T Consensus 91 ~Ly~~~-~~~---------~~al~i~~~~~~~~~a~e~~~~~-~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 91 YLYSKL-GNH---------DEALEILHKLKDYEEAIEYAKKV-DDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHCC-TTH---------TTCSSTSSSTHCSCCCTTTGGGC-SSSHHHHHHHHHHCTSTC
T ss_pred HHHHHc-ccH---------HHHHHHHHHHccHHHHHHHHHhc-CcHHHHHHHHHHHHhcCc
Confidence 888766 211 11111244556666666444433 446677777777765544
No 198
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.36 E-value=0.095 Score=32.30 Aligned_cols=59 Identities=20% Similarity=0.185 Sum_probs=46.1
Q ss_pred HHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhh
Q 038429 162 HFYAVCGDLAMAYCVFVMIGK--K-DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVT 222 (258)
Q Consensus 162 ~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t 222 (258)
..|.+.+++++|.++++.+.. | +...|...-..+...|++++|.+.|++..+. .|+...
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~--~p~~~~ 64 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL--SPDDPD 64 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH--CCCcHH
Confidence 567888999999999988765 4 5667777778888999999999999888865 355443
No 199
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=95.31 E-value=0.54 Score=34.48 Aligned_cols=133 Identities=17% Similarity=0.118 Sum_probs=82.8
Q ss_pred HHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc--cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhh
Q 038429 110 IFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF--EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVS 187 (258)
Q Consensus 110 ~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 187 (258)
.+.-+ .+.+++|+...+..+++.+.+.|++..-..++..- +++...-..|++. .. ....+.++--.|.++=...
T Consensus 16 YirSl-~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~-~~--~~~~~~Ql~lDMLkRL~~~ 91 (167)
T PF07035_consen 16 YIRSL-NQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSL-GN--QYPPAYQLGLDMLKRLGTA 91 (167)
T ss_pred HHHHH-HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHh-Hc--cChHHHHHHHHHHHHhhhh
Confidence 34444 56778888888888888888888877666665554 4444444333322 21 2223333333333332235
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHcC
Q 038429 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250 (258)
Q Consensus 188 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 250 (258)
+..+++.+...|++-+|.++.+..... +......++.+..+.+|...-..+++...+.+
T Consensus 92 ~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 92 YEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEERN 150 (167)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 667777888889999999988764322 23334567888888888888888888766544
No 200
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.25 E-value=0.46 Score=40.82 Aligned_cols=149 Identities=12% Similarity=0.046 Sum_probs=100.3
Q ss_pred ChHHHHHHhc--cCC-CCChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhh
Q 038429 72 SLEYARKMFD--QIP-QPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG 148 (258)
Q Consensus 72 ~~~~a~~~~~--~m~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 148 (258)
+++++.++.+ ++. .-+..-.+.++.-+-+.|.++.|+.+..+- . .-.....+.|+++.|.++.+
T Consensus 276 d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~-~------------~rFeLAl~lg~L~~A~~~a~ 342 (443)
T PF04053_consen 276 DFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDP-D------------HRFELALQLGNLDIALEIAK 342 (443)
T ss_dssp -HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-H-H------------HHHHHHHHCT-HHHHHHHCC
T ss_pred ChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCCh-H------------HHhHHHHhcCCHHHHHHHHH
Confidence 7777544443 111 222445788888899999999998876544 1 22445567888888888777
Q ss_pred cccCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 038429 149 MFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLS 228 (258)
Q Consensus 149 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~ 228 (258)
... +...|..|-+...+.|+++-|++.|.+.. -|..|+-.|.-.|+.++-.++.+.....|- ++..+.
T Consensus 343 ~~~-~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~-----d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~ 410 (443)
T PF04053_consen 343 ELD-DPEKWKQLGDEALRQGNIELAEECYQKAK-----DFSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQ 410 (443)
T ss_dssp CCS-THHHHHHHHHHHHHTTBHHHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHH
T ss_pred hcC-cHHHHHHHHHHHHHcCCHHHHHHHHHhhc-----CccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHH
Confidence 764 56699999999999999999999999865 366777778888888887777766665542 566666
Q ss_pred HHhccCChhHHHHHHHH
Q 038429 229 ACAKKRDLEFGIWVSSH 245 (258)
Q Consensus 229 ~~~~~g~~~~a~~~~~~ 245 (258)
++.-.|++++..+++.+
T Consensus 411 ~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 411 AALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHT-HHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHH
Confidence 67777888888877764
No 201
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=95.21 E-value=0.92 Score=33.88 Aligned_cols=119 Identities=11% Similarity=-0.032 Sum_probs=66.8
Q ss_pred CCCCcchHHHHHHHhcCcCCcchhhhhhhcc-----cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C---ChhhHH
Q 038429 120 YFPNEFTLPFVIKAAARPVQFRVGQAIHGMF-----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK--K---DVVSWN 189 (258)
Q Consensus 120 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~---~~~~~~ 189 (258)
+-|+...---|-+++.+.|+..+|...|+.. ..|....-.+.++....+++..|...++..-+ | +..+.-
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 3455555556666666666666666666665 44555555666666666777777776665433 1 333444
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHH
Q 038429 190 SMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGI 240 (258)
Q Consensus 190 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~ 240 (258)
.+-..+...|+..+|+.-|+-...- -|+...-...-..+.+.|+.+++.
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHH
Confidence 4556666667777777777665553 344433222233344455444443
No 202
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=94.74 E-value=0.49 Score=43.21 Aligned_cols=98 Identities=14% Similarity=0.085 Sum_probs=46.2
Q ss_pred cCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHh--cCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhcCCHHHH
Q 038429 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAA--ARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMA 173 (258)
Q Consensus 100 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~--~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a 173 (258)
.++++..|+.......++.+-.+ |..++.++ .+.|+.++|..+++.. ..|..|...+-..|.+.|+.++|
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~----~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNAL----YAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcH----HHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence 34455555555555433332221 22223322 3445555555555554 33455555555556666666666
Q ss_pred HHHHHhcCC--CChhhHHHHHHHHHcCCCh
Q 038429 174 YCVFVMIGK--KDVVSWNSMISGFVEGGFF 201 (258)
Q Consensus 174 ~~~~~~m~~--~~~~~~~~li~~~~~~g~~ 201 (258)
..+|+...+ |+..-...+.-+|++-+.+
T Consensus 97 ~~~Ye~~~~~~P~eell~~lFmayvR~~~y 126 (932)
T KOG2053|consen 97 VHLYERANQKYPSEELLYHLFMAYVREKSY 126 (932)
T ss_pred HHHHHHHHhhCCcHHHHHHHHHHHHHHHHH
Confidence 666655543 3333333444444554444
No 203
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=94.73 E-value=0.28 Score=39.03 Aligned_cols=59 Identities=15% Similarity=0.006 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC--CC----hhhHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 038429 156 ISNSLIHFYAVCGDLAMAYCVFVMIGK--KD----VVSWNSMISGFVEGGFFEKAIELYREMEVE 214 (258)
Q Consensus 156 ~~~~li~~~~~~g~~~~a~~~~~~m~~--~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 214 (258)
.+-.+-..|...|++++|...|..+.+ |+ ...+-.+...+...|+.++|..+|++..+.
T Consensus 182 A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 182 ANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344556666677777777777776653 32 223333444556677777777777777654
No 204
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=94.68 E-value=2.2 Score=35.66 Aligned_cols=157 Identities=13% Similarity=0.026 Sum_probs=87.1
Q ss_pred hhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcch---------------------------------------HHH
Q 038429 89 YTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFT---------------------------------------LPF 129 (258)
Q Consensus 89 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~---------------------------------------~~~ 129 (258)
..+...+...|..|+|++|+++++.-....-+.++..- --.
T Consensus 189 WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~ 268 (531)
T COG3898 189 WAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVV 268 (531)
T ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHH
Confidence 45788899999999999999999876223333343321 111
Q ss_pred HHHHhcCcCCcchhhhhhhcc---cCchhHHHHHHHHHHhcCCHHH--HH--HHHHhcCCCChhhHHHHHHHHHcCCChH
Q 038429 130 VIKAAARPVQFRVGQAIHGMF---EDDLVISNSLIHFYAVCGDLAM--AY--CVFVMIGKKDVVSWNSMISGFVEGGFFE 202 (258)
Q Consensus 130 ll~~~~~~~~~~~a~~~~~~~---~~~~~~~~~li~~~~~~g~~~~--a~--~~~~~m~~~~~~~~~~li~~~~~~g~~~ 202 (258)
-..++.+.|+..++-.+++.+ +|...++ .+..+.+.|+... .. +-+..|+..+..+--.+..+....|++.
T Consensus 269 AAralf~d~~~rKg~~ilE~aWK~ePHP~ia--~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~ 346 (531)
T COG3898 269 AARALFRDGNLRKGSKILETAWKAEPHPDIA--LLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFS 346 (531)
T ss_pred HHHHHHhccchhhhhhHHHHHHhcCCChHHH--HHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchH
Confidence 223445555555555555555 3333332 2223344444211 11 1234444455556666666666666666
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHh-ccCChhHHHHHHHHHHHc
Q 038429 203 KAIELYREMEVENVKPDEVTMVVVLSACA-KKRDLEFGIWVSSHIEKN 249 (258)
Q Consensus 203 ~a~~~~~~m~~~~~~p~~~t~~~li~~~~-~~g~~~~a~~~~~~m~~~ 249 (258)
.|..--+.... ..|....|..|-+.-. ..||-.++.+.+.+-.+.
T Consensus 347 ~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 347 AARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 55443333322 4577777777766644 348888877777776654
No 205
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.66 E-value=0.29 Score=39.01 Aligned_cols=84 Identities=12% Similarity=0.005 Sum_probs=69.0
Q ss_pred HHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHhccCChhH
Q 038429 163 FYAVCGDLAMAYCVFVMIGK--K-DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPD-EVTMVVVLSACAKKRDLEF 238 (258)
Q Consensus 163 ~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~t~~~li~~~~~~g~~~~ 238 (258)
-..+.+++.+|+..|.+..+ | |.+-|..--.+|.+.|..+.|.+=.+.... +-|. ..+|..|-.+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHHH
Confidence 34577899999999998765 4 778888999999999999999887766554 3454 4689999999999999999
Q ss_pred HHHHHHHHHH
Q 038429 239 GIWVSSHIEK 248 (258)
Q Consensus 239 a~~~~~~m~~ 248 (258)
|.+.|+...+
T Consensus 168 A~~aykKaLe 177 (304)
T KOG0553|consen 168 AIEAYKKALE 177 (304)
T ss_pred HHHHHHhhhc
Confidence 9999887653
No 206
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=94.65 E-value=0.68 Score=40.10 Aligned_cols=112 Identities=12% Similarity=0.049 Sum_probs=82.9
Q ss_pred cchhhhhhhcc-----cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC----C-ChhhHHHHHHHHHcCCChHHHHHHHH
Q 038429 140 FRVGQAIHGMF-----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK----K-DVVSWNSMISGFVEGGFFEKAIELYR 209 (258)
Q Consensus 140 ~~~a~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~-~~~~~~~li~~~~~~g~~~~a~~~~~ 209 (258)
.+....+++.+ ..-..+|..+|+.--|..-++.|..+|.+.++ + ++..++++++-||. ++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence 33444444444 23345788999999999999999999998876 2 77788999987775 67788999997
Q ss_pred HHHHcCCCCChh-hHHHHHHHHhccCChhHHHHHHHHHHHcCCccc
Q 038429 210 EMEVENVKPDEV-TMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254 (258)
Q Consensus 210 ~m~~~~~~p~~~-t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 254 (258)
--.+. + +|.. --...++-+.+.++-..|..+|+.....++.||
T Consensus 426 LGLkk-f-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ 469 (656)
T KOG1914|consen 426 LGLKK-F-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSAD 469 (656)
T ss_pred HHHHh-c-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChh
Confidence 64443 2 3443 346777888888888889999998888776665
No 207
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=94.65 E-value=0.87 Score=36.39 Aligned_cols=99 Identities=11% Similarity=-0.031 Sum_probs=72.6
Q ss_pred cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHcCC---ChHHHHHHHHHHHHcCCCCChhhHH
Q 038429 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK---KDVVSWNSMISGFVEGG---FFEKAIELYREMEVENVKPDEVTMV 224 (258)
Q Consensus 151 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~~~p~~~t~~ 224 (258)
+-|...|-.|-..|...|+++.|...|....+ ++...+..+-+++.... ...++..+|+++.... .-|..+..
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~ 231 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALS 231 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHH
Confidence 66778899999999999999999999887654 46666666655554332 3568888888887653 12445566
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHcC
Q 038429 225 VVLSACAKKRDLEFGIWVSSHIEKNG 250 (258)
Q Consensus 225 ~li~~~~~~g~~~~a~~~~~~m~~~g 250 (258)
-|--.+...|++.+|...|+.|.+..
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 66677888899999999999887754
No 208
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=94.61 E-value=0.41 Score=38.20 Aligned_cols=105 Identities=10% Similarity=-0.068 Sum_probs=58.7
Q ss_pred CcchHHHHHHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhc---CCHHHHHHHHHhcCC--C-ChhhHHHHH
Q 038429 123 NEFTLPFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVC---GDLAMAYCVFVMIGK--K-DVVSWNSMI 192 (258)
Q Consensus 123 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~--~-~~~~~~~li 192 (258)
|...|-.|-.+|...|+++.|..-|... +++...+..+-.++... .+..++.++|+++.+ | |+.+-..|-
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA 234 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLA 234 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 4455555555555555555555555544 44444444444444332 235667777776654 3 444455555
Q ss_pred HHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 038429 193 SGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSA 229 (258)
Q Consensus 193 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~ 229 (258)
..+...|++.+|...|+.|.+.. |....+..+|..
T Consensus 235 ~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie~ 269 (287)
T COG4235 235 FAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIER 269 (287)
T ss_pred HHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHHH
Confidence 66777777777777777777652 334444444443
No 209
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=94.57 E-value=1.4 Score=39.19 Aligned_cols=189 Identities=13% Similarity=0.085 Sum_probs=100.9
Q ss_pred HHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC--CChhhHHH-----HHHHHhcCCChhhHHHHHHHhHh
Q 038429 44 AQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ--PNLYTWNT-----LIRAYSSSDEPIQSFMIFLQLVY 116 (258)
Q Consensus 44 ~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~-----li~~~~~~g~~~~a~~~~~~m~~ 116 (258)
+++++.|-.|+.... ...|+-.| .+.+|.++|.+--. +-...|+. ...-+...|..++-..+.+.- .
T Consensus 624 ~~~k~rge~P~~iLl---A~~~Ay~g--KF~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKR-A 697 (1081)
T KOG1538|consen 624 EERKKRGETPNDLLL---ADVFAYQG--KFHEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKR-A 697 (1081)
T ss_pred HHHHhcCCCchHHHH---HHHHHhhh--hHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH-H
Confidence 455566666665433 33455566 77777777765543 11122221 233344445444433333221 1
Q ss_pred c--CCC-CCCcchHHHHHHHhcCcCCcchhhhh-------------hhcc-cCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 038429 117 N--SPY-FPNEFTLPFVIKAAARPVQFRVGQAI-------------HGMF-EDDLVISNSLIHFYAVCGDLAMAYCVFVM 179 (258)
Q Consensus 117 ~--~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~-------------~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 179 (258)
+ +++ +|. +....+...|+.++|..+ -..+ ..+..+.-.+-.-+.+...+.-|-++|..
T Consensus 698 ~WAr~~kePk-----aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k 772 (1081)
T KOG1538|consen 698 DWARNIKEPK-----AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLK 772 (1081)
T ss_pred HHhhhcCCcH-----HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHH
Confidence 1 111 121 122233344554444433 2222 33444444445555566677778888887
Q ss_pred cCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChh-----------hHHHHHHHHhccCChhHHHHHHHHHHH
Q 038429 180 IGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEV-----------TMVVVLSACAKKRDLEFGIWVSSHIEK 248 (258)
Q Consensus 180 m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-----------t~~~li~~~~~~g~~~~a~~~~~~m~~ 248 (258)
|.. ...++......++|.+|..+-++.-+ +.||.+ -|.-.-.+|-+.|+-.+|.++++++..
T Consensus 773 ~gD-----~ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 773 MGD-----LKSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hcc-----HHHHhhheeecccchHhHhhhhhCcc--ccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 653 23456667788889998888766433 334332 244455678888888888888888765
Q ss_pred cC
Q 038429 249 NG 250 (258)
Q Consensus 249 ~g 250 (258)
..
T Consensus 846 na 847 (1081)
T KOG1538|consen 846 NA 847 (1081)
T ss_pred hh
Confidence 43
No 210
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=94.57 E-value=0.097 Score=37.27 Aligned_cols=129 Identities=12% Similarity=0.099 Sum_probs=76.8
Q ss_pred HHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcccCchhHHHHHHHHHHhcCCHHHH
Q 038429 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMA 173 (258)
Q Consensus 94 li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 173 (258)
+|..+.+.+.+.....+++.+ ...+...+....+.++..|++.++.+....+++.. +.+-...+++.|.+.|.++.+
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~-~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~--~~yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEAL-VKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS--NNYDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHH-HHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS--SSS-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHH-HhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc--cccCHHHHHHHHHhcchHHHH
Confidence 566667777777777788777 55554556667788888888887767777666633 224555677777777777777
Q ss_pred HHHHHhcCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCh
Q 038429 174 YCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDL 236 (258)
Q Consensus 174 ~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~ 236 (258)
.-++.++...+... ..+...++++.|.+++.+ .+|...|..+++.|...++.
T Consensus 90 ~~Ly~~~~~~~~al-----~i~~~~~~~~~a~e~~~~------~~~~~l~~~l~~~~l~~~~~ 141 (143)
T PF00637_consen 90 VYLYSKLGNHDEAL-----EILHKLKDYEEAIEYAKK------VDDPELWEQLLKYCLDSKPF 141 (143)
T ss_dssp HHHHHCCTTHTTCS-----STSSSTHCSCCCTTTGGG------CSSSHHHHHHHHHHCTSTCT
T ss_pred HHHHHHcccHHHHH-----HHHHHHccHHHHHHHHHh------cCcHHHHHHHHHHHHhcCcc
Confidence 77777665421110 012233344444432221 24567777777777766543
No 211
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.41 E-value=0.26 Score=41.79 Aligned_cols=64 Identities=6% Similarity=-0.028 Sum_probs=56.6
Q ss_pred ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHhccCChhHHHHHHHHHHHc
Q 038429 184 DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDE----VTMVVVLSACAKKRDLEFGIWVSSHIEKN 249 (258)
Q Consensus 184 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 249 (258)
+...|+.+-.+|...|++++|+..|++..+. .|+. .+|..+-.+|...|++++|.+.+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6678999999999999999999999997774 5764 35899999999999999999999998775
No 212
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.24 E-value=1.3 Score=31.23 Aligned_cols=78 Identities=12% Similarity=0.040 Sum_probs=43.3
Q ss_pred ccccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCCCChhhHHHHHHHHhcCCChhhHHHH
Q 038429 31 HFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMI 110 (258)
Q Consensus 31 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~ 110 (258)
...+.+.....+++.+.+.+ ..++...+.++..|++.. -+.....++. ..+......+++.|.+.+.++++.-+
T Consensus 18 ~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~---~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~~~~~l 91 (140)
T smart00299 18 EKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD---PQKEIERLDN--KSNHYDIEKVGKLCEKAKLYEEAVEL 91 (140)
T ss_pred HhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC---HHHHHHHHHh--ccccCCHHHHHHHHHHcCcHHHHHHH
Confidence 33456666666666666665 356666777777776553 2333333331 23334444566666666666666666
Q ss_pred HHHh
Q 038429 111 FLQL 114 (258)
Q Consensus 111 ~~~m 114 (258)
+..+
T Consensus 92 ~~k~ 95 (140)
T smart00299 92 YKKD 95 (140)
T ss_pred HHhh
Confidence 6555
No 213
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.14 E-value=0.86 Score=31.94 Aligned_cols=80 Identities=9% Similarity=-0.024 Sum_probs=57.3
Q ss_pred CCcchhhhhhhcccCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhhHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 038429 138 VQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIG---KKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214 (258)
Q Consensus 138 ~~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 214 (258)
|++..+...+..+..+....+..++.+...|+-|.-.+++..+. ++++...-.+-.+|.+.|+..++.+++++.-+.
T Consensus 70 ~NlKrVi~C~~~~n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 70 GNLKRVIECYAKRNKLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp S-THHHHHHHHHTT---HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHhcchHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 34444444444445556677888999999999999999998875 578888888999999999999999999999888
Q ss_pred CCC
Q 038429 215 NVK 217 (258)
Q Consensus 215 ~~~ 217 (258)
|++
T Consensus 150 G~k 152 (161)
T PF09205_consen 150 GLK 152 (161)
T ss_dssp T-H
T ss_pred chH
Confidence 863
No 214
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=94.04 E-value=0.18 Score=38.44 Aligned_cols=166 Identities=13% Similarity=0.047 Sum_probs=75.3
Q ss_pred ChHHHHHHhccCCC--C----ChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhh
Q 038429 72 SLEYARKMFDQIPQ--P----NLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQA 145 (258)
Q Consensus 72 ~~~~a~~~~~~m~~--~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 145 (258)
++++|...|+.+.. | ...+.-.++.++-+.|++++|...+++..+...-.|.. -+...+.+.+..........
T Consensus 20 ~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~-~~A~Y~~g~~~~~~~~~~~~ 98 (203)
T PF13525_consen 20 DYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA-DYALYMLGLSYYKQIPGILR 98 (203)
T ss_dssp -HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH-HHHHHHHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch-hhHHHHHHHHHHHhCccchh
Confidence 67777777666543 2 22334456666677777777777777764443333321 12222222211110000000
Q ss_pred hhhcc---cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCh--
Q 038429 146 IHGMF---EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDE-- 220 (258)
Q Consensus 146 ~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-- 220 (258)
..... ..-...+..+|.-|=.+.-..+|......+++.=...--.+..-|.+.|.+..|..-++.+.+. . |+.
T Consensus 99 ~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~-y-p~t~~ 176 (203)
T PF13525_consen 99 SDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIEN-Y-PDTPA 176 (203)
T ss_dssp TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHH-S-TTSHH
T ss_pred cccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-C-CCCch
Confidence 00000 0011233333444444444444444433332211111112445678888888888888888775 2 332
Q ss_pred --hhHHHHHHHHhccCChhHHH
Q 038429 221 --VTMVVVLSACAKKRDLEFGI 240 (258)
Q Consensus 221 --~t~~~li~~~~~~g~~~~a~ 240 (258)
.....++.++.+.|..+.+.
T Consensus 177 ~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 177 AEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHHHhCChHHHH
Confidence 34577788888888877443
No 215
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=94.03 E-value=0.26 Score=34.08 Aligned_cols=82 Identities=11% Similarity=0.058 Sum_probs=42.8
Q ss_pred ccccchhhHHHHHHHHHhhccCcc--hhhhhhhhhhhhccCCCChHHHHHHhccCCC--CC----hhhHHHHHHHHhcCC
Q 038429 31 HFLTNQKQLKRIHAQMLSTDFFFD--PYSASKLFTPCALSTFSSLEYARKMFDQIPQ--PN----LYTWNTLIRAYSSSD 102 (258)
Q Consensus 31 ~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~--~~----~~~~~~li~~~~~~g 102 (258)
-..|+.++|..+|+.....|+..+ ...+-.+-..+...| +.++|..+|++... |+ ......+.-++...|
T Consensus 12 d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG--~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~g 89 (120)
T PF12688_consen 12 DSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLG--RYDEALALLEEALEEFPDDELNAALRVFLALALYNLG 89 (120)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCC
Confidence 345666667777776666665443 223444555555556 66666666654432 22 111122223445556
Q ss_pred ChhhHHHHHHHh
Q 038429 103 EPIQSFMIFLQL 114 (258)
Q Consensus 103 ~~~~a~~~~~~m 114 (258)
+.++|++.+-..
T Consensus 90 r~~eAl~~~l~~ 101 (120)
T PF12688_consen 90 RPKEALEWLLEA 101 (120)
T ss_pred CHHHHHHHHHHH
Confidence 666666655443
No 216
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.02 E-value=0.58 Score=37.37 Aligned_cols=78 Identities=13% Similarity=0.166 Sum_probs=63.6
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHH-----cCCCCChhhHH
Q 038429 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGK--K-DVVSWNSMISGFVEGGFFEKAIELYREMEV-----ENVKPDEVTMV 224 (258)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~t~~ 224 (258)
-..++..++..+...|+++.+.+.+++... | +...|..++.+|.+.|+...|+..|+.+.. .|+.|...+..
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 455677888888889999999999888765 3 778899999999999999999999988765 48888888777
Q ss_pred HHHHHH
Q 038429 225 VVLSAC 230 (258)
Q Consensus 225 ~li~~~ 230 (258)
......
T Consensus 232 ~y~~~~ 237 (280)
T COG3629 232 LYEEIL 237 (280)
T ss_pred HHHHHh
Confidence 666663
No 217
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.01 E-value=0.56 Score=36.94 Aligned_cols=107 Identities=9% Similarity=-0.023 Sum_probs=75.4
Q ss_pred CCChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHH-----HhcCcCCcchhhhhhhcc----cCchh
Q 038429 85 QPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK-----AAARPVQFRVGQAIHGMF----EDDLV 155 (258)
Q Consensus 85 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~-----~~~~~~~~~~a~~~~~~~----~~~~~ 155 (258)
+.++..-..|.+.--+.|+.+.|...|++. .+..-+.|..+++.++. .+.-.+++..+...+..+ +.|+.
T Consensus 209 e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~v-ek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~ 287 (366)
T KOG2796|consen 209 EQEPQLLSGLGRISMQIGDIKTAEKYFQDV-EKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAV 287 (366)
T ss_pred cccHHHHHHHHHHHHhcccHHHHHHHHHHH-HHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchh
Confidence 456667777888888899999999999999 44444556666655443 344556777777777666 55666
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhhHHHHH
Q 038429 156 ISNSLIHFYAVCGDLAMAYCVFVMIGK--KDVVSWNSMI 192 (258)
Q Consensus 156 ~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~li 192 (258)
..|+-.-+..-.|+..+|.+..+.|.+ |...+-++++
T Consensus 288 a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~ 326 (366)
T KOG2796|consen 288 ANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVL 326 (366)
T ss_pred hhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHH
Confidence 666666666667999999999999987 5444444443
No 218
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=93.73 E-value=2.2 Score=31.96 Aligned_cols=95 Identities=14% Similarity=0.013 Sum_probs=50.5
Q ss_pred CChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc---cC---chhHHHH
Q 038429 86 PNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF---ED---DLVISNS 159 (258)
Q Consensus 86 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~---~~---~~~~~~~ 159 (258)
|++..--.|..++.+.|+..+|...|++. ...-.--|....-.+.++....+++..+...++.+ +| +..+.-.
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qa-lsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQA-LSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHH-hccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 44444445555666666666666666555 33333344455555555555566666665555555 11 1122233
Q ss_pred HHHHHHhcCCHHHHHHHHHhcC
Q 038429 160 LIHFYAVCGDLAMAYCVFVMIG 181 (258)
Q Consensus 160 li~~~~~~g~~~~a~~~~~~m~ 181 (258)
+-+.|.-.|+..+|+..|+...
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~ 187 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAI 187 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHH
Confidence 4455666666666666666544
No 219
>PRK15331 chaperone protein SicA; Provisional
Probab=93.71 E-value=0.7 Score=33.66 Aligned_cols=80 Identities=8% Similarity=-0.098 Sum_probs=50.1
Q ss_pred hcCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhcCCHHHHHHHHHhc---CCCChhhHHHHHHHHHcCCChHHHHH
Q 038429 134 AARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVFVMI---GKKDVVSWNSMISGFVEGGFFEKAIE 206 (258)
Q Consensus 134 ~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m---~~~~~~~~~~li~~~~~~g~~~~a~~ 206 (258)
+-..|++++|+.+|..+ .-+..-|..|-.++...+++++|...|... ...|...+--.-.+|...|+.+.|..
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHH
Confidence 34567777777777777 444455666666666777777777777532 22344444455556666777777777
Q ss_pred HHHHHHH
Q 038429 207 LYREMEV 213 (258)
Q Consensus 207 ~~~~m~~ 213 (258)
-|+....
T Consensus 127 ~f~~a~~ 133 (165)
T PRK15331 127 CFELVNE 133 (165)
T ss_pred HHHHHHh
Confidence 7666555
No 220
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.62 E-value=1.3 Score=35.90 Aligned_cols=123 Identities=11% Similarity=0.080 Sum_probs=74.8
Q ss_pred hhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcC--cCC----cchhhhhhhcc--------cCchhHHHHHHHHHHhcCC
Q 038429 104 PIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAAR--PVQ----FRVGQAIHGMF--------EDDLVISNSLIHFYAVCGD 169 (258)
Q Consensus 104 ~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~--~~~----~~~a~~~~~~~--------~~~~~~~~~li~~~~~~g~ 169 (258)
+++.+.+++.| ++.|..-+..+|-+..-.... ..+ ...+..+++.| .++-..+..++.. ...+
T Consensus 78 ~~~~~~~y~~L-~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~ 154 (297)
T PF13170_consen 78 FKEVLDIYEKL-KEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSED 154 (297)
T ss_pred HHHHHHHHHHH-HHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--cccc
Confidence 45667788888 889999888777653333322 333 34678888888 5555666666554 2232
Q ss_pred ----HHHHHHHHHhcCC------CChhhHHHHHHHHHcCCC--hHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 038429 170 ----LAMAYCVFVMIGK------KDVVSWNSMISGFVEGGF--FEKAIELYREMEVENVKPDEVTMVVVLSA 229 (258)
Q Consensus 170 ----~~~a~~~~~~m~~------~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~p~~~t~~~li~~ 229 (258)
.+.++.+|+.+.+ .+......++........ ...+.++++.+.+.|+++....|..+.-.
T Consensus 155 ~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 155 VEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence 3555566665543 133444444433332222 44788889999999988877776655433
No 221
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.55 E-value=3.5 Score=35.22 Aligned_cols=135 Identities=10% Similarity=0.083 Sum_probs=88.2
Q ss_pred CcccccchhhHHHHHHHHHhhccC----cc-hhhhhhhhhhhhccCCCChHHHHHHhccCCC-CChhhHHHHHHHHh--c
Q 038429 29 HPHFLTNQKQLKRIHAQMLSTDFF----FD-PYSASKLFTPCALSTFSSLEYARKMFDQIPQ-PNLYTWNTLIRAYS--S 100 (258)
Q Consensus 29 ~~~~~~~~~~a~~~~~~m~~~~~~----~~-~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~-~~~~~~~~li~~~~--~ 100 (258)
.+.+.+++.++..+|..+.+..-. .. ...-+.++++|... +++.....+....+ -....|-.+..++. +
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~---nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN---NLDLMEKQLMELRQQFGKSAYLPLFKALVAYK 91 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh---hHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 566788999999999999876422 11 22346788888865 56666666655544 22444555555443 4
Q ss_pred CCChhhHHHHHHHhHhcC--CCCCC-----------cch-HHHHHHHhcCcCCcchhhhhhhcc---------cCchhHH
Q 038429 101 SDEPIQSFMIFLQLVYNS--PYFPN-----------EFT-LPFVIKAAARPVQFRVGQAIHGMF---------EDDLVIS 157 (258)
Q Consensus 101 ~g~~~~a~~~~~~m~~~~--~~~p~-----------~~~-~~~ll~~~~~~~~~~~a~~~~~~~---------~~~~~~~ 157 (258)
.++.++|++.+..- +.. +..|. ... =+..++++...|++.++..+++.+ ..+..+|
T Consensus 92 ~k~~~kal~~ls~w-~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 92 QKEYRKALQALSVW-KEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred hhhHHHHHHHHHHH-HhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 57788887777554 322 22221 111 246677889999999999998888 4688888
Q ss_pred HHHHHHHHhc
Q 038429 158 NSLIHFYAVC 167 (258)
Q Consensus 158 ~~li~~~~~~ 167 (258)
|.++-.++++
T Consensus 171 d~~vlmlsrS 180 (549)
T PF07079_consen 171 DRAVLMLSRS 180 (549)
T ss_pred HHHHHHHhHH
Confidence 8877777654
No 222
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.50 E-value=0.62 Score=37.18 Aligned_cols=70 Identities=14% Similarity=0.149 Sum_probs=60.5
Q ss_pred hhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHH-----cCCcccc
Q 038429 185 VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEK-----NGIKMDL 255 (258)
Q Consensus 185 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~ 255 (258)
..++..+++.+...|+.+.+...++++.... +-|...|..++.+|.+.|+...|...++.+.+ .|+.|..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~ 227 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAP 227 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccH
Confidence 4578889999999999999999999998763 35889999999999999999999999998764 6777754
No 223
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=93.31 E-value=0.85 Score=32.54 Aligned_cols=90 Identities=12% Similarity=0.074 Sum_probs=70.9
Q ss_pred HhhccCcchh--hhhhhhhhhhccCCCChHHHHHHhccCCC---------CChhhHHHHHHHHhcCCC-hhhHHHHHHHh
Q 038429 47 LSTDFFFDPY--SASKLFTPCALSTFSSLEYARKMFDQIPQ---------PNLYTWNTLIRAYSSSDE-PIQSFMIFLQL 114 (258)
Q Consensus 47 ~~~~~~~~~~--~~~~li~~~~~~~~~~~~~a~~~~~~m~~---------~~~~~~~~li~~~~~~g~-~~~a~~~~~~m 114 (258)
...+..++.. ..|.++.-...-+ ++.....+++.+.. .+..+|+.++++.+++.. ---+..+|+-|
T Consensus 29 ~~~~~~~~~k~~fiN~iL~hl~~~~--nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~L 106 (145)
T PF13762_consen 29 QEENASQSTKTIFINCILNHLASYQ--NFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFL 106 (145)
T ss_pred hhcccChhHHHHHHHHHHHHHHHcc--chHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHH
Confidence 4445565554 4688888888777 99988888887753 567789999999988776 45668888999
Q ss_pred HhcCCCCCCcchHHHHHHHhcCcCC
Q 038429 115 VYNSPYFPNEFTLPFVIKAAARPVQ 139 (258)
Q Consensus 115 ~~~~~~~p~~~~~~~ll~~~~~~~~ 139 (258)
++.+.+++..-|..+|+++.+...
T Consensus 107 -k~~~~~~t~~dy~~li~~~l~g~~ 130 (145)
T PF13762_consen 107 -KKNDIEFTPSDYSCLIKAALRGYF 130 (145)
T ss_pred -HHcCCCCCHHHHHHHHHHHHcCCC
Confidence 778899999999999999888643
No 224
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.13 E-value=1.3 Score=35.02 Aligned_cols=93 Identities=14% Similarity=0.156 Sum_probs=72.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC--C----ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcC-CCCC-hhhHHHHH
Q 038429 156 ISNSLIHFYAVCGDLAMAYCVFVMIGK--K----DVVSWNSMISGFVEGGFFEKAIELYREMEVEN-VKPD-EVTMVVVL 227 (258)
Q Consensus 156 ~~~~li~~~~~~g~~~~a~~~~~~m~~--~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~-~~t~~~li 227 (258)
.|+.-+..| +.|++.+|...|..-.+ | ....+--|-+++...|+.++|..+|..+.+.- =.|- ...+--|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 577766655 56779999999987765 3 33456678899999999999999999998752 1122 25666777
Q ss_pred HHHhccCChhHHHHHHHHHHHc
Q 038429 228 SACAKKRDLEFGIWVSSHIEKN 249 (258)
Q Consensus 228 ~~~~~~g~~~~a~~~~~~m~~~ 249 (258)
.+..+.|+.++|..+|+++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 7888999999999999999865
No 225
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=93.01 E-value=4.5 Score=33.38 Aligned_cols=214 Identities=11% Similarity=-0.029 Sum_probs=135.8
Q ss_pred CcccccchhhHHHHHHHHHhhccCcc------------hhhh--hhhhhhhhccCCCChHHHHHHhccCCC---CChhhH
Q 038429 29 HPHFLTNQKQLKRIHAQMLSTDFFFD------------PYSA--SKLFTPCALSTFSSLEYARKMFDQIPQ---PNLYTW 91 (258)
Q Consensus 29 ~~~~~~~~~~a~~~~~~m~~~~~~~~------------~~~~--~~li~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~ 91 (258)
.+-+.|.+++|.+=|+.+++...... ...+ ...+..+.-.| +...|.....++.+ -+...|
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~G--D~~~ai~~i~~llEi~~Wda~l~ 192 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSG--DCQNAIEMITHLLEIQPWDASLR 192 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCC--chhhHHHHHHHHHhcCcchhHHH
Confidence 45568999999999999987743211 1112 22334445556 88888888877754 577888
Q ss_pred HHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc---cCchhHH-H---HH----
Q 038429 92 NTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF---EDDLVIS-N---SL---- 160 (258)
Q Consensus 92 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~---~~~~~~~-~---~l---- 160 (258)
..-..+|...|.+..|+.=++.. .+. -.-|+.++--+-..+-..|+.+.+....... .||--.+ . .|
T Consensus 193 ~~Rakc~i~~~e~k~AI~Dlk~a-skL-s~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~ 270 (504)
T KOG0624|consen 193 QARAKCYIAEGEPKKAIHDLKQA-SKL-SQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVV 270 (504)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHH-Hhc-cccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHH
Confidence 88899999999999997666555 222 1234555656666667778877776655555 3333221 1 11
Q ss_pred -----HHHHHhcCCHHHHHHHHHhcCC--CC--hh---hHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC-hhhHHHHH
Q 038429 161 -----IHFYAVCGDLAMAYCVFVMIGK--KD--VV---SWNSMISGFVEGGFFEKAIELYREMEVENVKPD-EVTMVVVL 227 (258)
Q Consensus 161 -----i~~~~~~g~~~~a~~~~~~m~~--~~--~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~t~~~li 227 (258)
+....+.+++.++.+-.+...+ |. .+ .+..+-.++...+++.+|+..-.+... +.|| ..++.-=.
T Consensus 271 K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~dRA 348 (504)
T KOG0624|consen 271 KSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCDRA 348 (504)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHHHH
Confidence 1222344566666666554432 32 22 344566777888899999988887765 4565 56666666
Q ss_pred HHHhccCChhHHHHHHHHHHH
Q 038429 228 SACAKKRDLEFGIWVSSHIEK 248 (258)
Q Consensus 228 ~~~~~~g~~~~a~~~~~~m~~ 248 (258)
.+|.-...++.|..=|+...+
T Consensus 349 eA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 349 EAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred HHHhhhHHHHHHHHHHHHHHh
Confidence 777777777777776666544
No 226
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=92.99 E-value=1.9 Score=37.48 Aligned_cols=150 Identities=12% Similarity=0.077 Sum_probs=99.1
Q ss_pred hhhhhhhhhccCCCChHHHHHHhccCCC-C---------ChhhHHHHHHHHhcC----CChhhHHHHHHHhHhcCCCCCC
Q 038429 58 ASKLFTPCALSTFSSLEYARKMFDQIPQ-P---------NLYTWNTLIRAYSSS----DEPIQSFMIFLQLVYNSPYFPN 123 (258)
Q Consensus 58 ~~~li~~~~~~~~~~~~~a~~~~~~m~~-~---------~~~~~~~li~~~~~~----g~~~~a~~~~~~m~~~~~~~p~ 123 (258)
+..++...+-.| |-+...+++.+..+ . -.-.|+.++..++.. ...+.|.++++.+ .+. -|+
T Consensus 191 ~~kll~~vGF~g--dR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~-~~~--yP~ 265 (468)
T PF10300_consen 191 VLKLLSFVGFSG--DRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEM-LKR--YPN 265 (468)
T ss_pred HHHHHhhcCcCC--cHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHH-HHh--CCC
Confidence 455666677777 88888888776543 2 223477777666654 4678899999988 432 366
Q ss_pred cchHHHH-HHHhcCcCCcchhhhhhhcc--------cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhhHHHH
Q 038429 124 EFTLPFV-IKAAARPVQFRVGQAIHGMF--------EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKK---DVVSWNSM 191 (258)
Q Consensus 124 ~~~~~~l-l~~~~~~~~~~~a~~~~~~~--------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~l 191 (258)
..-|... -+.+...|++++|...++.. +.....+--+.-.+.-.+++++|.+.|..+.+- ...+|.-+
T Consensus 266 s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~ 345 (468)
T PF10300_consen 266 SALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYL 345 (468)
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHH
Confidence 6555433 34466778999999999965 333334444555677789999999999988763 33445544
Q ss_pred HHHH-HcCCCh-------HHHHHHHHHHH
Q 038429 192 ISGF-VEGGFF-------EKAIELYREME 212 (258)
Q Consensus 192 i~~~-~~~g~~-------~~a~~~~~~m~ 212 (258)
..+| ...|+. ++|.++|++..
T Consensus 346 ~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 346 AAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 4333 455666 88888887753
No 227
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=92.99 E-value=0.25 Score=41.29 Aligned_cols=218 Identities=9% Similarity=-0.039 Sum_probs=130.1
Q ss_pred CcccccchhhHHHHHHHHHhhccCcchh----hhhhhhhhhhccCCCChHHHHHHhcc-------CC----C--------
Q 038429 29 HPHFLTNQKQLKRIHAQMLSTDFFFDPY----SASKLFTPCALSTFSSLEYARKMFDQ-------IP----Q-------- 85 (258)
Q Consensus 29 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~li~~~~~~~~~~~~~a~~~~~~-------m~----~-------- 85 (258)
.+++.|+.+....+|...++.|.. |.. +|..|-++|...+ ++++|+++... |. +
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~--DY~kAl~yH~hDltlar~lgdklGEAKssgNLG 102 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLK--DYEKALKYHTHDLTLARLLGDKLGEAKSSGNLG 102 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHh--hHHHHHhhhhhhHHHHHHhcchhcccccccccc
Confidence 467789999999999999998843 433 4666777777777 88888776431 10 0
Q ss_pred ------------------------------CChhhHHHHHHHHhcCCC--------------------hhhHHHHHHHh-
Q 038429 86 ------------------------------PNLYTWNTLIRAYSSSDE--------------------PIQSFMIFLQL- 114 (258)
Q Consensus 86 ------------------------------~~~~~~~~li~~~~~~g~--------------------~~~a~~~~~~m- 114 (258)
....++..+-..|...|+ ++.|.++|.+=
T Consensus 103 NtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL 182 (639)
T KOG1130|consen 103 NTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENL 182 (639)
T ss_pred chhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHH
Confidence 011223333344433321 12222222210
Q ss_pred --HhcCCCC-CCcchHHHHHHHhcCcCCcchhhhhhhcc----------cCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 038429 115 --VYNSPYF-PNEFTLPFVIKAAARPVQFRVGQAIHGMF----------EDDLVISNSLIHFYAVCGDLAMAYCVFVMIG 181 (258)
Q Consensus 115 --~~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 181 (258)
..+.|-. .-...|..|-+.|--.|+++.|...++.- ......+..|-+++.-.|+++.|.+.|+.-.
T Consensus 183 ~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl 262 (639)
T KOG1130|consen 183 ELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTL 262 (639)
T ss_pred HHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHH
Confidence 0111110 11234555555555567777776665544 3344567778888888888888888876432
Q ss_pred -------CC--ChhhHHHHHHHHHcCCChHHHHHHHHHHHH----cC-CCCChhhHHHHHHHHhccCChhHHHHHHHHHH
Q 038429 182 -------KK--DVVSWNSMISGFVEGGFFEKAIELYREMEV----EN-VKPDEVTMVVVLSACAKKRDLEFGIWVSSHIE 247 (258)
Q Consensus 182 -------~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~-~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 247 (258)
.+ ...+.-+|-..|.-..++++|+.++.+=.. .+ ..-....|.+|-.++...|..++|..+...-.
T Consensus 263 ~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 263 NLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 22 223445566666666778888887755321 11 22356789999999999999999988777654
Q ss_pred Hc
Q 038429 248 KN 249 (258)
Q Consensus 248 ~~ 249 (258)
+.
T Consensus 343 ~~ 344 (639)
T KOG1130|consen 343 RS 344 (639)
T ss_pred HH
Confidence 43
No 228
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.94 E-value=1 Score=38.73 Aligned_cols=133 Identities=11% Similarity=0.009 Sum_probs=88.4
Q ss_pred hhhhhhhhhhhhccCCCChHHHHHHhccCCCCChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHh
Q 038429 55 PYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAA 134 (258)
Q Consensus 55 ~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~ 134 (258)
....+.++..+-+.| -.+.|+.+...- ..-.....+.|+++.|.++.++. .+...|..|-+..
T Consensus 295 ~~~~~~i~~fL~~~G--~~e~AL~~~~D~--------~~rFeLAl~lg~L~~A~~~a~~~-------~~~~~W~~Lg~~A 357 (443)
T PF04053_consen 295 KDQGQSIARFLEKKG--YPELALQFVTDP--------DHRFELALQLGNLDIALEIAKEL-------DDPEKWKQLGDEA 357 (443)
T ss_dssp HHHHHHHHHHHHHTT---HHHHHHHSS-H--------HHHHHHHHHCT-HHHHHHHCCCC-------STHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCC--CHHHHHhhcCCh--------HHHhHHHHhcCCHHHHHHHHHhc-------CcHHHHHHHHHHH
Confidence 334788888888888 888888885432 34556667788888887765444 3667888999999
Q ss_pred cCcCCcchhhhhhhcccCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHcCCChHHHHHHHHH
Q 038429 135 ARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210 (258)
Q Consensus 135 ~~~~~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 210 (258)
.+.|+++.|+..+.... -+..|+--|.-.|+.++-.++.+...... -+|....++.-.|+.++..+++.+
T Consensus 358 L~~g~~~lAe~c~~k~~----d~~~L~lLy~~~g~~~~L~kl~~~a~~~~--~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 358 LRQGNIELAEECYQKAK----DFSGLLLLYSSTGDREKLSKLAKIAEERG--DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHTTBHHHHHHHHHHCT-----HHHHHHHHHHCT-HHHHHHHHHHHHHTT---HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHhhc----CccccHHHHHHhCCHHHHHHHHHHHHHcc--CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999988888888763 25666667777788777777766544322 245555555555777777666643
No 229
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.93 E-value=0.62 Score=37.58 Aligned_cols=94 Identities=13% Similarity=0.142 Sum_probs=58.7
Q ss_pred cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-C--------ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChh
Q 038429 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK-K--------DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEV 221 (258)
Q Consensus 151 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~--------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 221 (258)
+.+..+...++..-....+++++...+-..+. | +.++|--+ +.+ =+.++++.++..=.+-|+-||.+
T Consensus 61 ~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irl---llk-y~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 61 PVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRL---LLK-YDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHH---HHc-cChHHHHHHHhCcchhccccchh
Confidence 33444555555555555667777766655543 2 22233222 222 24567777777767778888888
Q ss_pred hHHHHHHHHhccCChhHHHHHHHHHHH
Q 038429 222 TMVVVLSACAKKRDLEFGIWVSSHIEK 248 (258)
Q Consensus 222 t~~~li~~~~~~g~~~~a~~~~~~m~~ 248 (258)
|+..+++.+.+.+++.+|.++.-.|+.
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 888888888888888888877776654
No 230
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=92.46 E-value=2.8 Score=33.53 Aligned_cols=61 Identities=10% Similarity=-0.008 Sum_probs=29.2
Q ss_pred CChhhHHHHHHHHHcCCChHHHHHHHHHHHHc-CCCCChhhHHHHHHHHhccCChhHHHHHH
Q 038429 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVE-NVKPDEVTMVVVLSACAKKRDLEFGIWVS 243 (258)
Q Consensus 183 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~t~~~li~~~~~~g~~~~a~~~~ 243 (258)
++..+....|+.+++.++|.+-.++|+.-... +..-|...|..+|+.-...|+..-...+.
T Consensus 200 l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 200 LTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred CChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 34444445555555555555555555443332 23334445555555555555554443333
No 231
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.43 E-value=0.29 Score=25.53 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=12.7
Q ss_pred HHHHHHHHHcCCChHHHHHHHHH
Q 038429 188 WNSMISGFVEGGFFEKAIELYRE 210 (258)
Q Consensus 188 ~~~li~~~~~~g~~~~a~~~~~~ 210 (258)
|+.|-..|.+.|++++|++++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44555555566666666666555
No 232
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.39 E-value=0.24 Score=25.90 Aligned_cols=25 Identities=20% Similarity=0.232 Sum_probs=21.0
Q ss_pred hHHHHHHHHhcCCChhhHHHHHHHh
Q 038429 90 TWNTLIRAYSSSDEPIQSFMIFLQL 114 (258)
Q Consensus 90 ~~~~li~~~~~~g~~~~a~~~~~~m 114 (258)
+|+.|-..|.+.|++++|+.+|++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5788899999999999999999884
No 233
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=92.26 E-value=1.4 Score=41.16 Aligned_cols=148 Identities=11% Similarity=-0.079 Sum_probs=100.0
Q ss_pred CcccccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCCC---C--hhhHHHHHHHHhcCCC
Q 038429 29 HPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQP---N--LYTWNTLIRAYSSSDE 103 (258)
Q Consensus 29 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~~---~--~~~~~~li~~~~~~g~ 103 (258)
.++...+..+|.+.|....... .-+...+....+.|+... +++.|..+.-...+. . ..-|-..--.|...++
T Consensus 501 iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~--~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n 577 (1238)
T KOG1127|consen 501 IYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEES--TWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHN 577 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccc--cHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccc
Confidence 3444446777777777776655 446677889999999999 999998884333221 1 1223334445667788
Q ss_pred hhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 038429 104 PIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVFVM 179 (258)
Q Consensus 104 ~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 179 (258)
..+|+.-|+.. -+. -+-|...|..+..+|.++|++..|..+|... +.+.+.---.--.-|..|++.+|.+.+..
T Consensus 578 ~h~aV~~fQsA-LR~-dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ 655 (1238)
T KOG1127|consen 578 LHGAVCEFQSA-LRT-DPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGL 655 (1238)
T ss_pred hhhHHHHHHHH-hcC-CchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 88888887766 222 1335677889999999999999999999877 22233333333445677889998888876
Q ss_pred cC
Q 038429 180 IG 181 (258)
Q Consensus 180 m~ 181 (258)
..
T Consensus 656 ii 657 (1238)
T KOG1127|consen 656 II 657 (1238)
T ss_pred HH
Confidence 54
No 234
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.93 E-value=2.1 Score=38.64 Aligned_cols=116 Identities=11% Similarity=-0.026 Sum_probs=76.1
Q ss_pred ccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCCCChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHH
Q 038429 50 DFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPF 129 (258)
Q Consensus 50 ~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ 129 (258)
|....-.+.+-.+.-+...| +-.+|.++-.+..-||-..|-.-+.+++..++|++-+++-+.+ + ++.-|.-
T Consensus 679 ~~~f~dlSl~dTv~~li~~g--~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAksk-k------sPIGy~P 749 (829)
T KOG2280|consen 679 GGSFVDLSLHDTVTTLILIG--QNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSK-K------SPIGYLP 749 (829)
T ss_pred ccccccCcHHHHHHHHHHcc--chHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhcc-C------CCCCchh
Confidence 33334445555666666677 7788888888777788888888888888888777765554433 1 2455666
Q ss_pred HHHHhcCcCCcchhhhhhhcccCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 038429 130 VIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFV 178 (258)
Q Consensus 130 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 178 (258)
...+|.+.|+.++|...+....+.. -...+|.+.|++.+|.++--
T Consensus 750 FVe~c~~~~n~~EA~KYiprv~~l~----ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 750 FVEACLKQGNKDEAKKYIPRVGGLQ----EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HHHHHHhcccHHHHhhhhhccCChH----HHHHHHHHhccHHHHHHHHH
Confidence 7777777777777777666663322 45666777777766666543
No 235
>PRK15331 chaperone protein SicA; Provisional
Probab=91.69 E-value=1 Score=32.82 Aligned_cols=46 Identities=13% Similarity=-0.011 Sum_probs=19.6
Q ss_pred hcCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 038429 134 AARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVFVM 179 (258)
Q Consensus 134 ~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 179 (258)
+-..+++++|...+... ..|...+-..-.+|...|+.+.|.+.|..
T Consensus 81 ~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~ 130 (165)
T PRK15331 81 CQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFEL 130 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHH
Confidence 33344444444444444 22222333334444444555555544443
No 236
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=91.66 E-value=1.6 Score=36.51 Aligned_cols=98 Identities=9% Similarity=-0.003 Sum_probs=64.2
Q ss_pred CCCceeeecCCCccCcccccchhhHHHHHHHHHhhc---cCcchhhhhhhhhhhhc---cCCCChHHHHHHhcc-CC---
Q 038429 15 PNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTD---FFFDPYSASKLFTPCAL---STFSSLEYARKMFDQ-IP--- 84 (258)
Q Consensus 15 p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~li~~~~~---~~~~~~~~a~~~~~~-m~--- 84 (258)
|...+..++..++.++....+++...++.+.+.... +.-++.+--....++.+ .| +-++|..++.. ..
T Consensus 136 ~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~g--dre~Al~il~~~l~~~~ 213 (374)
T PF13281_consen 136 PELLSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPG--DREKALQILLPVLESDE 213 (374)
T ss_pred HhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCC--CHHHHHHHHHHHHhccC
Confidence 455566666777778999999999999999998762 22233333344555556 56 99999999877 33
Q ss_pred CCChhhHHHHHHHHhc----C-----CChhhHHHHHHHh
Q 038429 85 QPNLYTWNTLIRAYSS----S-----DEPIQSFMIFLQL 114 (258)
Q Consensus 85 ~~~~~~~~~li~~~~~----~-----g~~~~a~~~~~~m 114 (258)
.++..+|..+.+.|-. + ...++|+..|.+-
T Consensus 214 ~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kg 252 (374)
T PF13281_consen 214 NPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKG 252 (374)
T ss_pred CCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHH
Confidence 2667777776665532 1 1255666655543
No 237
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=91.66 E-value=3.7 Score=32.29 Aligned_cols=145 Identities=10% Similarity=0.025 Sum_probs=81.3
Q ss_pred hhccCCCChHHHHHHhccCCC--CChh-h---HHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcC--
Q 038429 65 CALSTFSSLEYARKMFDQIPQ--PNLY-T---WNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAAR-- 136 (258)
Q Consensus 65 ~~~~~~~~~~~a~~~~~~m~~--~~~~-~---~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~-- 136 (258)
+...| +++.|...|+.+.. |+.. . .-.+..++.+.+++++|...+++.++...-.|+. -|...+.+.+.
T Consensus 42 ~~~~g--~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~-~~a~Y~~g~~~~~ 118 (243)
T PRK10866 42 KLQDG--NWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI-DYVLYMRGLTNMA 118 (243)
T ss_pred HHHCC--CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch-HHHHHHHHHhhhh
Confidence 34456 77787777777654 3221 1 2345566677778888888887775544444433 22222222221
Q ss_pred c---------------CCcc---hhhhhhhcc---cCc-hhH-----------------HHHHHHHHHhcCCHHHHHHHH
Q 038429 137 P---------------VQFR---VGQAIHGMF---EDD-LVI-----------------SNSLIHFYAVCGDLAMAYCVF 177 (258)
Q Consensus 137 ~---------------~~~~---~a~~~~~~~---~~~-~~~-----------------~~~li~~~~~~g~~~~a~~~~ 177 (258)
. .|.. .|...++.+ -|+ ... --.+.+-|.+.|++..|..=|
T Consensus 119 ~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~ 198 (243)
T PRK10866 119 LDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRV 198 (243)
T ss_pred cchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHH
Confidence 0 1111 233334333 111 111 113345577888888888888
Q ss_pred HhcCC--C----ChhhHHHHHHHHHcCCChHHHHHHHHHHH
Q 038429 178 VMIGK--K----DVVSWNSMISGFVEGGFFEKAIELYREME 212 (258)
Q Consensus 178 ~~m~~--~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 212 (258)
+.+.+ | .....-.++.+|...|..++|..+...+.
T Consensus 199 ~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 199 EQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 87765 3 33456677888888888888887765543
No 238
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=91.52 E-value=5.3 Score=36.14 Aligned_cols=116 Identities=11% Similarity=-0.028 Sum_probs=65.3
Q ss_pred ccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC-CCh------------hhHHHHHHHHhcCCChhhHHHHHHHhHh
Q 038429 50 DFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ-PNL------------YTWNTLIRAYSSSDEPIQSFMIFLQLVY 116 (258)
Q Consensus 50 ~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~-~~~------------~~~~~li~~~~~~g~~~~a~~~~~~m~~ 116 (258)
.-.|.+..|..|..+....- .++.|+..|-+... +.. .--.+=|.+| -|++++|.++|-+| .
T Consensus 687 EdnPHprLWrllAe~Al~Kl--~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~-d 761 (1189)
T KOG2041|consen 687 EDNPHPRLWRLLAEYALFKL--ALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDA-D 761 (1189)
T ss_pred hcCCchHHHHHHHHHHHHHH--hhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhcc-c
Confidence 33688899998888888777 88888888876643 111 1111222222 37888898888887 4
Q ss_pred cCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc------cCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 038429 117 NSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF------EDDLVISNSLIHFYAVCGDLAMAYCVFVM 179 (258)
Q Consensus 117 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~------~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 179 (258)
++.+ .|....+.|+|-.+.++++.- +--...|+.+-+.+.....+++|.+.+..
T Consensus 762 rrDL---------Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 762 RRDL---------AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred hhhh---------hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4432 344444555555555544443 11123444555555555555555554443
No 239
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.51 E-value=1.4 Score=34.44 Aligned_cols=88 Identities=17% Similarity=0.137 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC--------CCh-hhHHHHHHHHHcCCChHHHHHHHHHHHHcC--CCC-ChhhH
Q 038429 156 ISNSLIHFYAVCGDLAMAYCVFVMIGK--------KDV-VSWNSMISGFVEGGFFEKAIELYREMEVEN--VKP-DEVTM 223 (258)
Q Consensus 156 ~~~~li~~~~~~g~~~~a~~~~~~m~~--------~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~p-~~~t~ 223 (258)
.+..+-+.+.+..++++|-..|..-.. ++. ..|-..|-.+.-..++..|+..++.--+.+ ..| |..+.
T Consensus 152 l~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~l 231 (308)
T KOG1585|consen 152 LYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSL 231 (308)
T ss_pred HHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHH
Confidence 445556666777777777666654332 111 234445555566667888888887754432 112 45678
Q ss_pred HHHHHHHhccCChhHHHHHHH
Q 038429 224 VVVLSACAKKRDLEFGIWVSS 244 (258)
Q Consensus 224 ~~li~~~~~~g~~~~a~~~~~ 244 (258)
..||.+|- .||.+++..++.
T Consensus 232 enLL~ayd-~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 232 ENLLTAYD-EGDIEEIKKVLS 251 (308)
T ss_pred HHHHHHhc-cCCHHHHHHHHc
Confidence 88888874 477777766654
No 240
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=91.44 E-value=2 Score=35.86 Aligned_cols=93 Identities=13% Similarity=0.049 Sum_probs=65.8
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhc---CCCChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 038429 153 DLVISNSLIHFYAVCGDLAMAYCVFVMI---GKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSA 229 (258)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~a~~~~~~m---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~ 229 (258)
-..+++.|.-+|.+.+++..|.+.-+.. ..+|+...----.+|...|+++.|...|+++.+ +.|+......=|..
T Consensus 256 k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~ 333 (397)
T KOG0543|consen 256 KLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIK 333 (397)
T ss_pred HHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHH
Confidence 3456778888888999988888766544 445666666666788888999999999999887 46877766555555
Q ss_pred Hhcc-C-ChhHHHHHHHHHH
Q 038429 230 CAKK-R-DLEFGIWVSSHIE 247 (258)
Q Consensus 230 ~~~~-g-~~~~a~~~~~~m~ 247 (258)
|.+. . ..+...++|..|-
T Consensus 334 l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 334 LKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 5433 2 3344567777775
No 241
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.98 E-value=1.1 Score=33.41 Aligned_cols=61 Identities=10% Similarity=-0.030 Sum_probs=37.2
Q ss_pred hhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCc--chHHHHHHHhcCcCCcchhhhhhhcc
Q 038429 89 YTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNE--FTLPFVIKAAARPVQFRVGQAIHGMF 150 (258)
Q Consensus 89 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~ 150 (258)
..+..+...|++.|+.++|++.|.++ ++....+.. ..+-.+|......+++..+.......
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~-~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRA-RDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHH-hhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34667777777777777777777777 655544443 23455556666666665555544444
No 242
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=90.97 E-value=4.1 Score=28.66 Aligned_cols=127 Identities=13% Similarity=0.055 Sum_probs=67.2
Q ss_pred hHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcccCchhHHHHHHHHHHhcCC
Q 038429 90 TWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGD 169 (258)
Q Consensus 90 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~ 169 (258)
.-..+|..+.+.+.+.....+++.+ ...+ ..+....+.++..|++... ......+.. ..+.+....+++.|.+.+.
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~-~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~-~~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESA-LKLN-SENPALQTKLIELYAKYDP-QKEIERLDN-KSNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHH-HccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh-ccccCCHHHHHHHHHHcCc
Confidence 3456777777777788888888877 4444 2555667777777765432 222222221 2233334446666666666
Q ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHHcC-CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHh
Q 038429 170 LAMAYCVFVMIGKKDVVSWNSMISGFVEG-GFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231 (258)
Q Consensus 170 ~~~a~~~~~~m~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~ 231 (258)
++++.-++..+.. |...+..+... ++.+.|.+++.+ .-+...|..++..+.
T Consensus 85 ~~~~~~l~~k~~~-----~~~Al~~~l~~~~d~~~a~~~~~~------~~~~~lw~~~~~~~l 136 (140)
T smart00299 85 YEEAVELYKKDGN-----FKDAIVTLIEHLGNYEKAIEYFVK------QNNPELWAEVLKALL 136 (140)
T ss_pred HHHHHHHHHhhcC-----HHHHHHHHHHcccCHHHHHHHHHh------CCCHHHHHHHHHHHH
Confidence 6666666665533 12222222222 556666665543 114445555555543
No 243
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=90.96 E-value=4.3 Score=28.87 Aligned_cols=53 Identities=13% Similarity=0.097 Sum_probs=38.2
Q ss_pred HHHhcCCHHHHHHHHHhcCCC------ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcC
Q 038429 163 FYAVCGDLAMAYCVFVMIGKK------DVVSWNSMISGFVEGGFFEKAIELYREMEVEN 215 (258)
Q Consensus 163 ~~~~~g~~~~a~~~~~~m~~~------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 215 (258)
...+.|++++|.+.|+.+... ....--.|+.+|-+.+++++|...+++..+.+
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh 77 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH 77 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 344668888888888877652 33455567788888888888888888877753
No 244
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=90.63 E-value=5.3 Score=29.34 Aligned_cols=59 Identities=15% Similarity=0.073 Sum_probs=40.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHHcC
Q 038429 157 SNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVEN 215 (258)
Q Consensus 157 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 215 (258)
+..+++.+...|++-+|.++.+....-+...-..++++....++...=..+|+-..+.+
T Consensus 92 ~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 92 YEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFEERN 150 (167)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 55566777788888888888887666555666777787777777665555555555543
No 245
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.50 E-value=3.9 Score=32.88 Aligned_cols=163 Identities=10% Similarity=-0.024 Sum_probs=75.7
Q ss_pred ChHHHHHHhccCCCCChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhccc
Q 038429 72 SLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFE 151 (258)
Q Consensus 72 ~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 151 (258)
.-+...+.+++...+....--.-.......|+..+|..+|+.. .... +-+...--.+..+|...|+.+.|..++..++
T Consensus 118 Pesqlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~a-l~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 118 PESQLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQA-LQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred cHHHHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHH-HHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 3334444444444332222222333445556666666666665 2221 1223445556666666666666666666661
Q ss_pred C-----chhHHHHHHHHHHhcCCHHHHHHHHHhc-CCC-ChhhHHHHHHHHHcCCChHHHHHHHHHHHHc--CCCCChhh
Q 038429 152 D-----DLVISNSLIHFYAVCGDLAMAYCVFVMI-GKK-DVVSWNSMISGFVEGGFFEKAIELYREMEVE--NVKPDEVT 222 (258)
Q Consensus 152 ~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~t 222 (258)
. .......-|..+.+.....+...+-... ..| |...=-.+-..+...|+.++|.+.+-.+... |. -|...
T Consensus 196 ~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~-~d~~~ 274 (304)
T COG3118 196 LQAQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGF-EDGEA 274 (304)
T ss_pred ccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc-cCcHH
Confidence 1 1111112233333333333333222222 224 4444445555666677777776655444433 22 23444
Q ss_pred HHHHHHHHhccCChh
Q 038429 223 MVVVLSACAKKRDLE 237 (258)
Q Consensus 223 ~~~li~~~~~~g~~~ 237 (258)
-..|+..+.--|.-+
T Consensus 275 Rk~lle~f~~~g~~D 289 (304)
T COG3118 275 RKTLLELFEAFGPAD 289 (304)
T ss_pred HHHHHHHHHhcCCCC
Confidence 455555555555333
No 246
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=90.26 E-value=7.6 Score=30.54 Aligned_cols=55 Identities=9% Similarity=0.026 Sum_probs=41.2
Q ss_pred HHHHHcCCChHHHHHHHHHHHHcCCCCC---hhhHHHHHHHHhccCChhHHHHHHHHHH
Q 038429 192 ISGFVEGGFFEKAIELYREMEVENVKPD---EVTMVVVLSACAKKRDLEFGIWVSSHIE 247 (258)
Q Consensus 192 i~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~t~~~li~~~~~~g~~~~a~~~~~~m~ 247 (258)
-.-|.+.|.+..|..-+++|.+. ..-. ...+-.+..+|.+.|-.++|...-.-+.
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 35678899999999999999886 3222 2346677888999999998887765554
No 247
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=90.00 E-value=12 Score=32.49 Aligned_cols=60 Identities=15% Similarity=0.076 Sum_probs=41.8
Q ss_pred HHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc
Q 038429 91 WNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF 150 (258)
Q Consensus 91 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 150 (258)
-..+..+..+.|+.++|++.|++|.+.....-+......|+.++...+.+.++..++...
T Consensus 262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 344666667788999999999888444432223445667788888888888887777776
No 248
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=89.77 E-value=9.1 Score=30.72 Aligned_cols=36 Identities=14% Similarity=0.034 Sum_probs=18.8
Q ss_pred cccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhc
Q 038429 32 FLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCAL 67 (258)
Q Consensus 32 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 67 (258)
+.|+.+.|..++..........++.....|...|..
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn 40 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYN 40 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHH
Confidence 456777777777766654323333333333333333
No 249
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.68 E-value=4 Score=30.35 Aligned_cols=92 Identities=13% Similarity=0.027 Sum_probs=63.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCCCC------hhhHHHHHHHHHcCCChHHHHHHHHHHHHc---CCCCChhhHHH
Q 038429 155 VISNSLIHFYAVCGDLAMAYCVFVMIGKKD------VVSWNSMISGFVEGGFFEKAIELYREMEVE---NVKPDEVTMVV 225 (258)
Q Consensus 155 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~t~~~ 225 (258)
..+..+.+-|++.|+.++|.+.|.++.+.. ...+-.+|......+++..+.....+.... |-.++...--.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 356778889999999999999999988742 235667788888889999888888776543 22222222222
Q ss_pred HHHH--HhccCChhHHHHHHHHH
Q 038429 226 VLSA--CAKKRDLEFGIWVSSHI 246 (258)
Q Consensus 226 li~~--~~~~g~~~~a~~~~~~m 246 (258)
...| +...|++..|-+.|-+.
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHcc
Confidence 2222 23468888888887665
No 250
>PHA02875 ankyrin repeat protein; Provisional
Probab=89.54 E-value=12 Score=31.79 Aligned_cols=207 Identities=8% Similarity=0.005 Sum_probs=104.5
Q ss_pred cccchhhHHHHHHHHHhhccCcchhh--hhhhhhhhhccCCCChHHHHHHhccCCCCChh--hHHHHHHHHhcCCChhhH
Q 038429 32 FLTNQKQLKRIHAQMLSTDFFFDPYS--ASKLFTPCALSTFSSLEYARKMFDQIPQPNLY--TWNTLIRAYSSSDEPIQS 107 (258)
Q Consensus 32 ~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~li~~~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~li~~~~~~g~~~~a 107 (258)
+.|+.+.+. .+.+.|..|+... ..+.+...+..| +.+-+..+++....++.. ...+.+...+..|+.+.+
T Consensus 11 ~~g~~~iv~----~Ll~~g~~~n~~~~~g~tpL~~A~~~~--~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v 84 (413)
T PHA02875 11 LFGELDIAR----RLLDIGINPNFEIYDGISPIKLAMKFR--DSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAV 84 (413)
T ss_pred HhCCHHHHH----HHHHCCCCCCccCCCCCCHHHHHHHcC--CHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHH
Confidence 345554443 4445676666543 344556666777 888777777665433321 122345566677877665
Q ss_pred HHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc-cCchh--HHHHHHHHHHhcCCHHHHHHHHHhcCCC-
Q 038429 108 FMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF-EDDLV--ISNSLIHFYAVCGDLAMAYCVFVMIGKK- 183 (258)
Q Consensus 108 ~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~- 183 (258)
..+++.- ....-..+..- .+.+...+..|+.+-++.+++.- .++.. .-.+.++..+..|+.+-+.-+++.-..+
T Consensus 85 ~~Ll~~~-~~~~~~~~~~g-~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~ 162 (413)
T PHA02875 85 EELLDLG-KFADDVFYKDG-MTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLD 162 (413)
T ss_pred HHHHHcC-CcccccccCCC-CCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCC
Confidence 5555432 11100111111 12334445566666666655544 22211 1234556666788887777776654332
Q ss_pred --ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhh---HHHHHHHHhccCChhHHHHHHHHHHHcCCcccc
Q 038429 184 --DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVT---MVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255 (258)
Q Consensus 184 --~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t---~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 255 (258)
|...++.|..+ +..|+.+ +.+.+.+.|..|+... ..+++...+..|+.+ +.+.+.+.|..+++
T Consensus 163 ~~d~~g~TpL~~A-~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad~n~ 230 (413)
T PHA02875 163 IEDCCGCTPLIIA-MAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGADCNI 230 (413)
T ss_pred CCCCCCCCHHHHH-HHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcCcch
Confidence 33344444443 4445544 3444556666665432 124444344556654 44555566766654
No 251
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.47 E-value=0.87 Score=36.79 Aligned_cols=97 Identities=11% Similarity=0.201 Sum_probs=71.8
Q ss_pred hccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC-------CChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCC
Q 038429 49 TDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ-------PNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYF 121 (258)
Q Consensus 49 ~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~-------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 121 (258)
.|...+..+...++..-.... .++++...+-.+.. ++...| +.++- +-.-++++++.++..= .++|+-
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~--~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irl-llky~pq~~i~~l~np-IqYGiF 132 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSRE--EIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRL-LLKYDPQKAIYTLVNP-IQYGIF 132 (418)
T ss_pred cCCCcceeehhhhhhcccccc--chhHHHHHHHHHhcCcchhhhccccHH-HHHHH-HHccChHHHHHHHhCc-chhccc
Confidence 455666667777777777666 88888877655542 332222 23333 3344678999988887 789999
Q ss_pred CCcchHHHHHHHhcCcCCcchhhhhhhcc
Q 038429 122 PNEFTLPFVIKAAARPVQFRVGQAIHGMF 150 (258)
Q Consensus 122 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 150 (258)
||..++..+|+.+.+.+++.+|.++...+
T Consensus 133 ~dqf~~c~l~D~flk~~n~~~aa~vvt~~ 161 (418)
T KOG4570|consen 133 PDQFTFCLLMDSFLKKENYKDAASVVTEV 161 (418)
T ss_pred cchhhHHHHHHHHHhcccHHHHHHHHHHH
Confidence 99999999999999999999988887766
No 252
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=89.33 E-value=6.3 Score=28.20 Aligned_cols=83 Identities=7% Similarity=0.081 Sum_probs=57.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcC---------CCChhhHHHHHHHHHcCCC-hHHHHHHHHHHHHcCCCCChhhHHHH
Q 038429 157 SNSLIHFYAVCGDLAMAYCVFVMIG---------KKDVVSWNSMISGFVEGGF-FEKAIELYREMEVENVKPDEVTMVVV 226 (258)
Q Consensus 157 ~~~li~~~~~~g~~~~a~~~~~~m~---------~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~p~~~t~~~l 226 (258)
.|+++.-....+++....++++.+. ..+-.+|++++.+.+...- ---+..+|.-|++.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3444444444455555555554442 1366789999999977666 44567889999998899999999999
Q ss_pred HHHHhccCChhHH
Q 038429 227 LSACAKKRDLEFG 239 (258)
Q Consensus 227 i~~~~~~g~~~~a 239 (258)
+.++.+....+..
T Consensus 122 i~~~l~g~~~~~~ 134 (145)
T PF13762_consen 122 IKAALRGYFHDSL 134 (145)
T ss_pred HHHHHcCCCCcch
Confidence 9999887555444
No 253
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.18 E-value=7.6 Score=31.98 Aligned_cols=146 Identities=10% Similarity=-0.057 Sum_probs=98.8
Q ss_pred hcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc----cCchhHHHHH----HHHHHhcCCH
Q 038429 99 SSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSL----IHFYAVCGDL 170 (258)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~l----i~~~~~~g~~ 170 (258)
.-.|++.+|-..++++.++ .|-|..++.-.=.+|...|+.+.....++.+ .+|...|..+ .-++..+|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d--~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD--YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh--CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 3457778887788887332 4667778888888888899888888888777 4555444433 2333478999
Q ss_pred HHHHHHHHhcCCC---ChhhHHHHHHHHHcCCChHHHHHHHHHHHHc---CCCCChhhHHHHHHHHhccCChhHHHHHHH
Q 038429 171 AMAYCVFVMIGKK---DVVSWNSMISGFVEGGFFEKAIELYREMEVE---NVKPDEVTMVVVLSACAKKRDLEFGIWVSS 244 (258)
Q Consensus 171 ~~a~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~t~~~li~~~~~~g~~~~a~~~~~ 244 (258)
++|++.-++..+- |.=.-.++-+.+-..|+..++.++..+-... +--.-.+.|-+..-.+...+.++.|.++|+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999998877663 4445556666677788888888776553221 111123445555556667799999999998
Q ss_pred HH
Q 038429 245 HI 246 (258)
Q Consensus 245 ~m 246 (258)
.-
T Consensus 272 ~e 273 (491)
T KOG2610|consen 272 RE 273 (491)
T ss_pred HH
Confidence 43
No 254
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=88.95 E-value=8.8 Score=31.62 Aligned_cols=65 Identities=12% Similarity=0.012 Sum_probs=44.2
Q ss_pred ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC---ChhhHHHHHHHHhccCChhHHHHHHHHHHH
Q 038429 184 DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKP---DEVTMVVVLSACAKKRDLEFGIWVSSHIEK 248 (258)
Q Consensus 184 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 248 (258)
...+|..+...+.+.|+++.|...+.++...+..+ +......-.+..-..|+..+|...+++..+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55677888888888888888888888777643221 233333445556667888888888877766
No 255
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.94 E-value=6 Score=28.80 Aligned_cols=49 Identities=14% Similarity=0.005 Sum_probs=24.1
Q ss_pred hcCcCCcchhhhhhhcc---cCchhHHHH-HHHHHHhcCCHHHHHHHHHhcCC
Q 038429 134 AARPVQFRVGQAIHGMF---EDDLVISNS-LIHFYAVCGDLAMAYCVFVMIGK 182 (258)
Q Consensus 134 ~~~~~~~~~a~~~~~~~---~~~~~~~~~-li~~~~~~g~~~~a~~~~~~m~~ 182 (258)
-.+.++.+.++.++..+ .|....... -.-.+.+.|++.+|.++|+++..
T Consensus 20 al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 34555666666666655 232221111 12223455666666666666544
No 256
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=88.78 E-value=1 Score=24.58 Aligned_cols=28 Identities=4% Similarity=-0.122 Sum_probs=15.5
Q ss_pred hHHHHHHHHhccCChhHHHHHHHHHHHc
Q 038429 222 TMVVVLSACAKKRDLEFGIWVSSHIEKN 249 (258)
Q Consensus 222 t~~~li~~~~~~g~~~~a~~~~~~m~~~ 249 (258)
++..+-..|.+.|++++|.+++++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444555555566666666666655543
No 257
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=88.70 E-value=14 Score=31.26 Aligned_cols=122 Identities=13% Similarity=-0.011 Sum_probs=76.6
Q ss_pred hhhhhhhhhccCCCChHHHHHHhccCCC---CChhhHHHHHHHH--hcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHH
Q 038429 58 ASKLFTPCALSTFSSLEYARKMFDQIPQ---PNLYTWNTLIRAY--SSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132 (258)
Q Consensus 58 ~~~li~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~--~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~ 132 (258)
|..|-.++...|.||-..|.++-.+-.+ .|....-.++.+- .-.|+.++|.+-|+.| .... .--..-...|.-
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAM-l~dP-EtRllGLRgLyl 162 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAM-LDDP-ETRLLGLRGLYL 162 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHH-hcCh-HHHHHhHHHHHH
Confidence 6677777777777788888877665432 3333333333322 3458899999999999 3220 001112344444
Q ss_pred HhcCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 038429 133 AAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIG 181 (258)
Q Consensus 133 ~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 181 (258)
..-+.|+.+.|...-+.. +--...+..++...|..|+++.|+++.+.-+
T Consensus 163 eAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~ 215 (531)
T COG3898 163 EAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQR 215 (531)
T ss_pred HHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 556667766666655555 3344577888888999999999998887554
No 258
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=88.51 E-value=4.7 Score=34.48 Aligned_cols=121 Identities=17% Similarity=0.245 Sum_probs=92.0
Q ss_pred hhhhhhhhhhhhccCCCChHHHHHHhccCCC-----CChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchH-H
Q 038429 55 PYSASKLFTPCALSTFSSLEYARKMFDQIPQ-----PNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL-P 128 (258)
Q Consensus 55 ~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~-----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~-~ 128 (258)
+.+|..++++-.+.. -++.|..+|-+..+ +++..++++|..++. |+..-|.++|+.=.+. -||...| .
T Consensus 397 t~v~C~~~N~v~r~~--Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~---f~d~~~y~~ 470 (660)
T COG5107 397 TFVFCVHLNYVLRKR--GLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK---FPDSTLYKE 470 (660)
T ss_pred hhHHHHHHHHHHHHh--hHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh---CCCchHHHH
Confidence 345666777777777 89999999987754 788899999998886 5678899999763232 3565555 5
Q ss_pred HHHHHhcCcCCcchhhhhhhcc----cCc--hhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 038429 129 FVIKAAARPVQFRVGQAIHGMF----EDD--LVISNSLIHFYAVCGDLAMAYCVFVMIG 181 (258)
Q Consensus 129 ~ll~~~~~~~~~~~a~~~~~~~----~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~ 181 (258)
..+.-+.+.++-..|..+|+.- +.+ ...|..+|+-=..-|++..+..+=+.|.
T Consensus 471 kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~ 529 (660)
T COG5107 471 KYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFR 529 (660)
T ss_pred HHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHH
Confidence 6777788889999999999955 444 4688899988888899887777666654
No 259
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=88.44 E-value=2.3 Score=27.95 Aligned_cols=43 Identities=14% Similarity=0.262 Sum_probs=22.7
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHH
Q 038429 205 IELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIE 247 (258)
Q Consensus 205 ~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 247 (258)
.+-+..+....+.|+.....+.+++|.|.+|+..|.++++-++
T Consensus 27 rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 27 RRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3333333344455555555555556555555555555555443
No 260
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=88.02 E-value=4.6 Score=28.41 Aligned_cols=45 Identities=13% Similarity=0.007 Sum_probs=21.3
Q ss_pred hcCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 038429 134 AARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVFV 178 (258)
Q Consensus 134 ~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~ 178 (258)
++..|+++.|.+.|... +-....||.-..++--.|+.++|.+=++
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn 101 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLN 101 (175)
T ss_pred HHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHH
Confidence 34444555554444444 3344445555555555555444444443
No 261
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.91 E-value=1.5 Score=34.68 Aligned_cols=92 Identities=10% Similarity=-0.014 Sum_probs=55.9
Q ss_pred hHHHHHHHHhcCCChhhHHHHHHHhHhcCCC-CCCcchHHHHHHHhcCcCCcchhhhhhhcc-------cCchhHHHHHH
Q 038429 90 TWNTLIRAYSSSDEPIQSFMIFLQLVYNSPY-FPNEFTLPFVIKAAARPVQFRVGQAIHGMF-------EDDLVISNSLI 161 (258)
Q Consensus 90 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~-------~~~~~~~~~li 161 (258)
.|+.-+.. .++|++.+|...|...++...- .-...++-.|..++...|++++|..+|..+ +.-....--|-
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 55555543 3456677777777776333211 112234556777777777777777777666 12223445556
Q ss_pred HHHHhcCCHHHHHHHHHhcCC
Q 038429 162 HFYAVCGDLAMAYCVFVMIGK 182 (258)
Q Consensus 162 ~~~~~~g~~~~a~~~~~~m~~ 182 (258)
.+..+.|+.++|...|++..+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHH
Confidence 667777888888888877765
No 262
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=87.71 E-value=2.3 Score=28.31 Aligned_cols=30 Identities=7% Similarity=0.075 Sum_probs=13.4
Q ss_pred CChhhHHHHHHHHHcCCChHHHHHHHHHHH
Q 038429 183 KDVVSWNSMISGFVEGGFFEKAIELYREME 212 (258)
Q Consensus 183 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 212 (258)
|.+....+.+.+|.+-+++.-|.++|+..+
T Consensus 43 P~P~ii~aALrAcRRvND~a~AVR~lE~iK 72 (108)
T PF02284_consen 43 PEPKIIEAALRACRRVNDFALAVRILEGIK 72 (108)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444444555555555555555555554443
No 263
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=87.62 E-value=1.3 Score=23.44 Aligned_cols=27 Identities=7% Similarity=-0.047 Sum_probs=18.2
Q ss_pred hhHHHHHHHHhccCChhHHHHHHHHHH
Q 038429 221 VTMVVVLSACAKKRDLEFGIWVSSHIE 247 (258)
Q Consensus 221 ~t~~~li~~~~~~g~~~~a~~~~~~m~ 247 (258)
.+++.|-..|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 456677777777777777777777654
No 264
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=87.50 E-value=11 Score=28.67 Aligned_cols=150 Identities=10% Similarity=0.045 Sum_probs=88.4
Q ss_pred HHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCC-cchHHHHHHHhcCcCCcchhhhhhhcc---cCch--hHHHHHHHHH
Q 038429 91 WNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPN-EFTLPFVIKAAARPVQFRVGQAIHGMF---EDDL--VISNSLIHFY 164 (258)
Q Consensus 91 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~---~~~~--~~~~~li~~~ 164 (258)
.-.....+.+.|++.+|...|+.+.....-.|- ..+.-.+..++-+.|+++.|...++.+ -|+. .-+...+.+.
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~ 87 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGL 87 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHH
Confidence 334555677889999999999999544332222 244567788888999999999988887 2221 2233334444
Q ss_pred HhcCCHHHHHHHHHhcCCCC-------hhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChh
Q 038429 165 AVCGDLAMAYCVFVMIGKKD-------VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLE 237 (258)
Q Consensus 165 ~~~g~~~~a~~~~~~m~~~~-------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~ 237 (258)
+......... ...+| ...|..+|.-|-......+|...+..+... . ...--.+.+-|.+.|.+.
T Consensus 88 ~~~~~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~---l-a~~e~~ia~~Y~~~~~y~ 158 (203)
T PF13525_consen 88 SYYKQIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR---L-AEHELYIARFYYKRGKYK 158 (203)
T ss_dssp HHHHHHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH---H-HHHHHHHHHHHHCTT-HH
T ss_pred HHHHhCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHcccHH
Confidence 3222222211 11111 236778888888888888887776666542 1 111223556678888888
Q ss_pred HHHHHHHHHHHc
Q 038429 238 FGIWVSSHIEKN 249 (258)
Q Consensus 238 ~a~~~~~~m~~~ 249 (258)
.|..-++.+.+.
T Consensus 159 aA~~r~~~v~~~ 170 (203)
T PF13525_consen 159 AAIIRFQYVIEN 170 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888887764
No 265
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=87.23 E-value=1.6 Score=23.08 Aligned_cols=28 Identities=25% Similarity=0.409 Sum_probs=18.4
Q ss_pred hhHHHHHHHHHcCCChHHHHHHHHHHHH
Q 038429 186 VSWNSMISGFVEGGFFEKAIELYREMEV 213 (258)
Q Consensus 186 ~~~~~li~~~~~~g~~~~a~~~~~~m~~ 213 (258)
.+++.|-..|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4566677777777777777777766543
No 266
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=87.01 E-value=3.1 Score=22.60 Aligned_cols=28 Identities=18% Similarity=0.262 Sum_probs=18.1
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 038429 187 SWNSMISGFVEGGFFEKAIELYREMEVE 214 (258)
Q Consensus 187 ~~~~li~~~~~~g~~~~a~~~~~~m~~~ 214 (258)
+|..+-..|.+.|++++|+++|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4555666666667777777777666654
No 267
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=87.01 E-value=16 Score=30.27 Aligned_cols=149 Identities=13% Similarity=0.070 Sum_probs=100.0
Q ss_pred HHHhcCCChhhHHHHHHHhHhcCCCCCCcc----------------hHHHHHHHhcCcCCcchhhhhhhcc----cCchh
Q 038429 96 RAYSSSDEPIQSFMIFLQLVYNSPYFPNEF----------------TLPFVIKAAARPVQFRVGQAIHGMF----EDDLV 155 (258)
Q Consensus 96 ~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~----------------~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~ 155 (258)
..+.+.|.++.|..=|+.. .+.. |+.. .....+..+...|+...|......+ +.|..
T Consensus 114 ~vllK~Gele~A~~DF~~v-l~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~ 190 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQV-LQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDAS 190 (504)
T ss_pred hhhhhcccHHHHHHHHHHH-HhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhH
Confidence 4567889999999999888 3332 2111 1223455566778888887777766 77888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHh---cCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHH----
Q 038429 156 ISNSLIHFYAVCGDLAMAYCVFVM---IGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLS---- 228 (258)
Q Consensus 156 ~~~~li~~~~~~g~~~~a~~~~~~---m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~---- 228 (258)
.|..-..+|...|++.+|+.=++. +.+.++.++--+-..+...|+.+.++...++..+ +.||-..+-..-.
T Consensus 191 l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkK 268 (504)
T KOG0624|consen 191 LRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKK 268 (504)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHH
Confidence 899999999999999999865544 3445777777777777888999999888888776 3466543222111
Q ss_pred ---------HHhccCChhHHHHHHHHHHHc
Q 038429 229 ---------ACAKKRDLEFGIWVSSHIEKN 249 (258)
Q Consensus 229 ---------~~~~~g~~~~a~~~~~~m~~~ 249 (258)
...+.+++-++.+-.+...+.
T Consensus 269 v~K~les~e~~ie~~~~t~cle~ge~vlk~ 298 (504)
T KOG0624|consen 269 VVKSLESAEQAIEEKHWTECLEAGEKVLKN 298 (504)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence 223445666666665555443
No 268
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=86.58 E-value=9.4 Score=32.31 Aligned_cols=151 Identities=11% Similarity=-0.063 Sum_probs=98.0
Q ss_pred CcccccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCCCChh---------------hHHH
Q 038429 29 HPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLY---------------TWNT 93 (258)
Q Consensus 29 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~~~~~---------------~~~~ 93 (258)
.+.-.++.++|.++--..++.. ....+...++..+---..+.+.+..-|++....++. .|..
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~ 254 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKE 254 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHh
Confidence 4455677888887777776654 223344445444433223888898888877652222 2333
Q ss_pred HHHHHhcCCChhhHHHHHHHhHh--cCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc-cCch-hHHHHHHHH--HHhc
Q 038429 94 LIRAYSSSDEPIQSFMIFLQLVY--NSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF-EDDL-VISNSLIHF--YAVC 167 (258)
Q Consensus 94 li~~~~~~g~~~~a~~~~~~m~~--~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~li~~--~~~~ 167 (258)
--+-..+.|++..|.+.|.+-+. -.++.|+...|.....+..+.|+.++|..--+.. ..|. ++...+..+ +...
T Consensus 255 ~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~l 334 (486)
T KOG0550|consen 255 RGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLAL 334 (486)
T ss_pred hhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHH
Confidence 44456788999999999988732 1345566667888888889999999998877766 4443 444444433 4456
Q ss_pred CCHHHHHHHHHhcCC
Q 038429 168 GDLAMAYCVFVMIGK 182 (258)
Q Consensus 168 g~~~~a~~~~~~m~~ 182 (258)
+++++|.+-|+...+
T Consensus 335 e~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 335 EKWEEAVEDYEKAMQ 349 (486)
T ss_pred HHHHHHHHHHHHHHh
Confidence 888999888876543
No 269
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=86.42 E-value=3 Score=34.86 Aligned_cols=27 Identities=15% Similarity=0.042 Sum_probs=17.5
Q ss_pred hhhHHHHHHHHhcCCChhhHHHHHHHh
Q 038429 88 LYTWNTLIRAYSSSDEPIQSFMIFLQL 114 (258)
Q Consensus 88 ~~~~~~li~~~~~~g~~~~a~~~~~~m 114 (258)
..+++++.-++.+.+++..|+...+..
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kv 283 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKV 283 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHH
Confidence 345666666677777777776666655
No 270
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=86.30 E-value=5 Score=28.24 Aligned_cols=48 Identities=8% Similarity=-0.146 Sum_probs=24.7
Q ss_pred HHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhh
Q 038429 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAI 146 (258)
Q Consensus 97 ~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 146 (258)
+++..|++++|++.|.+... - .+-...+||.-..++--.|+.++|..=
T Consensus 52 alaE~g~Ld~AlE~F~qal~-l-~P~raSayNNRAQa~RLq~~~e~ALdD 99 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC-L-APERASAYNNRAQALRLQGDDEEALDD 99 (175)
T ss_pred HHHhccchHHHHHHHHHHHH-h-cccchHhhccHHHHHHHcCChHHHHHH
Confidence 44555666666666655411 1 123344566655665555555555443
No 271
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=85.48 E-value=4.5 Score=35.09 Aligned_cols=97 Identities=18% Similarity=0.115 Sum_probs=67.6
Q ss_pred HHhcCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCh-hhHHHHHHHHHcCCChHHH
Q 038429 132 KAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK--KDV-VSWNSMISGFVEGGFFEKA 204 (258)
Q Consensus 132 ~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~-~~~~~li~~~~~~g~~~~a 204 (258)
++....|+++.|...|... +++-..|..-..+|.+.|++++|.+=-..-++ |+- ..|.-.-.++...|++++|
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA 89 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEA 89 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHH
Confidence 4566778888888877766 66777788888888888888888766554443 443 4677777777788888888
Q ss_pred HHHHHHHHHcCCCC-ChhhHHHHHHHH
Q 038429 205 IELYREMEVENVKP-DEVTMVVVLSAC 230 (258)
Q Consensus 205 ~~~~~~m~~~~~~p-~~~t~~~li~~~ 230 (258)
..-|.+-.+. .| |...+.-+..++
T Consensus 90 ~~ay~~GL~~--d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 90 ILAYSEGLEK--DPSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHhhc--CCchHHHHHhHHHhh
Confidence 8888775553 23 344566666665
No 272
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=85.23 E-value=12 Score=35.94 Aligned_cols=168 Identities=8% Similarity=0.072 Sum_probs=99.6
Q ss_pred CcccccchhhHHHHHHHHHhh-----ccCcch--hhhhhhhhhhhccCCCChHHHHHHhccCC---------CCChhhHH
Q 038429 29 HPHFLTNQKQLKRIHAQMLST-----DFFFDP--YSASKLFTPCALSTFSSLEYARKMFDQIP---------QPNLYTWN 92 (258)
Q Consensus 29 ~~~~~~~~~~a~~~~~~m~~~-----~~~~~~--~~~~~li~~~~~~~~~~~~~a~~~~~~m~---------~~~~~~~~ 92 (258)
+-.+..|+++-+-+++++.+. .+.-|. .-|...+..++.+|.+-++++..+.++=. +++...+.
T Consensus 860 Aq~SqkDPkEyLP~L~el~~m~~~~rkF~ID~~L~ry~~AL~hLs~~~~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k 939 (1265)
T KOG1920|consen 860 AQKSQKDPKEYLPFLNELKKMETLLRKFKIDDYLKRYEDALSHLSECGETYFPECKNYIKKHGLYDEALALYKPDSEKQK 939 (1265)
T ss_pred HHHhccChHHHHHHHHHHhhchhhhhheeHHHHHHHHHHHHHHHHHcCccccHHHHHHHHhcccchhhhheeccCHHHHH
Confidence 455567777777777776632 112221 22455555556665445666666554321 26666666
Q ss_pred HHHHHHh----cCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcccCch--h--HHHHHHHHH
Q 038429 93 TLIRAYS----SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDL--V--ISNSLIHFY 164 (258)
Q Consensus 93 ~li~~~~----~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~--~~~~li~~~ 164 (258)
.+..+|+ +.+.+++|.-.|+.. | -..-.+.+|..+|+|++|..+...+.++. . +--.|..-+
T Consensus 940 ~i~~~ya~hL~~~~~~~~Aal~Ye~~----G------klekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L 1009 (1265)
T KOG1920|consen 940 VIYEAYADHLREELMSDEAALMYERC----G------KLEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRL 1009 (1265)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHh----c------cHHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Confidence 6665554 446677776666544 1 23445778888888999988888882222 2 225677777
Q ss_pred HhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHcCCChHHHHHHHHH
Q 038429 165 AVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210 (258)
Q Consensus 165 ~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 210 (258)
...++.-+|-++..+-.+..... +..|+++..|++|.++-..
T Consensus 1010 ~e~~kh~eAa~il~e~~sd~~~a----v~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1010 VEQRKHYEAAKILLEYLSDPEEA----VALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred HHcccchhHHHHHHHHhcCHHHH----HHHHhhHhHHHHHHHHHHh
Confidence 78888888887777655433232 3344555567777766544
No 273
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=84.95 E-value=6.1 Score=34.32 Aligned_cols=98 Identities=11% Similarity=-0.095 Sum_probs=74.9
Q ss_pred HHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc---cCch-hHHHHHHHHHHhcCCHH
Q 038429 96 RAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF---EDDL-VISNSLIHFYAVCGDLA 171 (258)
Q Consensus 96 ~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~---~~~~-~~~~~li~~~~~~g~~~ 171 (258)
++.+..|+++.|+..|-+. ..-. ++|..-|+.-..+|+..|++++|.+=-..- .|+. --|.-.-.+..-.|+++
T Consensus 10 naa~s~~d~~~ai~~~t~a-i~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEA-IMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred HhhcccccHHHHHHHHHHH-HccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHH
Confidence 4667889999999999877 3332 347778999999999999998876544333 5554 47888888888899999
Q ss_pred HHHHHHHhcCC--C-ChhhHHHHHHHH
Q 038429 172 MAYCVFVMIGK--K-DVVSWNSMISGF 195 (258)
Q Consensus 172 ~a~~~~~~m~~--~-~~~~~~~li~~~ 195 (258)
+|..-|.+-.+ | |...++-+..++
T Consensus 88 eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 88 EAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 99999987654 3 556677777766
No 274
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=84.67 E-value=20 Score=29.07 Aligned_cols=197 Identities=13% Similarity=-0.007 Sum_probs=109.8
Q ss_pred hhhHHHHHHHHHhhccCcchhhhhhhhhhhhccC----CC-----ChHHHHHHhccCCC--CChhhHHHHHHHHhcCCCh
Q 038429 36 QKQLKRIHAQMLSTDFFFDPYSASKLFTPCALST----FS-----SLEYARKMFDQIPQ--PNLYTWNTLIRAYSSSDEP 104 (258)
Q Consensus 36 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~----~~-----~~~~a~~~~~~m~~--~~~~~~~~li~~~~~~g~~ 104 (258)
.+...+..+...+.........+...+.+|+..- +| --.+|+++|.-+.+ .-..+-+.++.++....+.
T Consensus 103 ~ekLnraIdr~~k~ve~~~eee~~~~iscfgg~ev~~rqg~~vkWis~KA~ELFayLv~hkgk~v~~~~~ie~lwpe~D~ 182 (361)
T COG3947 103 PEKLNRAIDRRLKRVELTAEEESGTQISCFGGTEVVLRQGQQVKWISRKALELFAYLVEHKGKEVTSWEAIEALWPEKDE 182 (361)
T ss_pred HHHHHHHHHHHhccccccchhccCeeeEeccceeeeccCCceeeehhhHHHHHHHHHHHhcCCcccHhHHHHHHccccch
Confidence 3444445555555544555667888888887221 00 13577888876643 3355556788888888888
Q ss_pred hhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhc--------ccCchhHHHHHHHHHHhc-CCHHHHHH
Q 038429 105 IQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM--------FEDDLVISNSLIHFYAVC-GDLAMAYC 175 (258)
Q Consensus 105 ~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~--------~~~~~~~~~~li~~~~~~-g~~~~a~~ 175 (258)
.+|...+...+-+ +=.++.+.+ ..++....+. ...|..-|-..+...-+- -.++++.+
T Consensus 183 kka~s~lhTtvyq------------lRKaLs~L~-~ne~vts~d~~Ykld~~~~k~Dv~e~es~~rqi~~inltide~ke 249 (361)
T COG3947 183 KKASSLLHTTVYQ------------LRKALSRLN-ANEAVTSQDRKYKLDAGLPKYDVQEYESLARQIEAINLTIDELKE 249 (361)
T ss_pred hhHHHHHHHHHHH------------HHHHhchhc-cCceEEEcCCceEEecCCccccHHHHHHHhhhhhccccCHHHHHH
Confidence 8887776654110 001111100 0000000000 033444444444333221 23455555
Q ss_pred HHHhcCC--------------------CChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCC
Q 038429 176 VFVMIGK--------------------KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRD 235 (258)
Q Consensus 176 ~~~~m~~--------------------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~ 235 (258)
+....+. --..+++..-..|..+|.+.+|.++.++..... +.+...+..++..+...||
T Consensus 250 lv~~ykgdyl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD 328 (361)
T COG3947 250 LVGQYKGDYLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGD 328 (361)
T ss_pred HHHHhcCCcCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhcc
Confidence 5444421 012355666678888999999998888877653 3467778888888888888
Q ss_pred hhHHHHHHHHH
Q 038429 236 LEFGIWVSSHI 246 (258)
Q Consensus 236 ~~~a~~~~~~m 246 (258)
--.|..-++.+
T Consensus 329 ~is~~khyery 339 (361)
T COG3947 329 EISAIKHYERY 339 (361)
T ss_pred chhhhhHHHHH
Confidence 66666666655
No 275
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=84.60 E-value=6.7 Score=37.52 Aligned_cols=88 Identities=14% Similarity=0.138 Sum_probs=53.6
Q ss_pred CCCcchHHHHHH----HhcCcCCcchhhhhhhcccCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-Chhh--HHHHHH
Q 038429 121 FPNEFTLPFVIK----AAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKK-DVVS--WNSMIS 193 (258)
Q Consensus 121 ~p~~~~~~~ll~----~~~~~~~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~--~~~li~ 193 (258)
.|+...+..... -+.....+++|.-+|+..-. ..--+.+|..+|++.+|..+..++..+ |... =..|+.
T Consensus 932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk----lekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s 1007 (1265)
T KOG1920|consen 932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK----LEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVS 1007 (1265)
T ss_pred ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc----HHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHH
Confidence 455555444443 34455666666666655511 112456677778888888877777654 3322 257778
Q ss_pred HHHcCCChHHHHHHHHHHH
Q 038429 194 GFVEGGFFEKAIELYREME 212 (258)
Q Consensus 194 ~~~~~g~~~~a~~~~~~m~ 212 (258)
-+...++.-+|-++..+-.
T Consensus 1008 ~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 1008 RLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHcccchhHHHHHHHHh
Confidence 8888888878777776643
No 276
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=84.06 E-value=14 Score=26.91 Aligned_cols=47 Identities=6% Similarity=-0.107 Sum_probs=22.9
Q ss_pred hcCCChhhHHHHHHHhHhcCCCCCCcc---hHHHHHHHhcCcCCcchhhhhhhcc
Q 038429 99 SSSDEPIQSFMIFLQLVYNSPYFPNEF---TLPFVIKAAARPVQFRVGQAIHGMF 150 (258)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~~~~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~ 150 (258)
.+.++.+++..++..+ +- ..|... ++..++ +...|+|.+|.++++.+
T Consensus 21 l~~~~~~D~e~lL~AL-rv--LRP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l 70 (160)
T PF09613_consen 21 LRLGDPDDAEALLDAL-RV--LRPEFPELDLFDGWL--HIVRGDWDDALRLLREL 70 (160)
T ss_pred HccCChHHHHHHHHHH-HH--hCCCchHHHHHHHHH--HHHhCCHHHHHHHHHHH
Confidence 3455566666666555 21 223322 222222 34555666666666666
No 277
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=84.02 E-value=1.9 Score=34.69 Aligned_cols=30 Identities=30% Similarity=0.341 Sum_probs=16.7
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCCC
Q 038429 188 WNSMISGFVEGGFFEKAIELYREMEVENVK 217 (258)
Q Consensus 188 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 217 (258)
||..|+...+.|++++|+.++++.++.|+.
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 445555555555555555555555555544
No 278
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=83.78 E-value=7.5 Score=25.85 Aligned_cols=82 Identities=11% Similarity=0.062 Sum_probs=57.7
Q ss_pred Ccchhhhhhhcc--cCc--hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 038429 139 QFRVGQAIHGMF--EDD--LVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214 (258)
Q Consensus 139 ~~~~a~~~~~~~--~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 214 (258)
..++|..|-+.+ .++ ..+--+-+..+...|++++|..+.+...-||...|-+|-. .+.|..+++..-+-+|...
T Consensus 20 cHqEA~tIAdwL~~~~~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 20 CHQEANTIADWLHLKGESEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 356677776666 332 2233333567788999999999999998899999988865 4667777777777788776
Q ss_pred CCCCChhhH
Q 038429 215 NVKPDEVTM 223 (258)
Q Consensus 215 ~~~p~~~t~ 223 (258)
|- |....|
T Consensus 98 g~-p~lq~F 105 (115)
T TIGR02508 98 GD-PRLQTF 105 (115)
T ss_pred CC-HHHHHH
Confidence 63 544444
No 279
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=83.61 E-value=5.2 Score=30.31 Aligned_cols=22 Identities=18% Similarity=0.066 Sum_probs=13.0
Q ss_pred CChhhHHHHHHHHHcCCChHHH
Q 038429 183 KDVVSWNSMISGFVEGGFFEKA 204 (258)
Q Consensus 183 ~~~~~~~~li~~~~~~g~~~~a 204 (258)
+|+..+..|.+.+.+.|+.+.|
T Consensus 176 ~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 176 FNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CCHHHHHHHHHHHHHhcchhhh
Confidence 3555566666666666665555
No 280
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=83.59 E-value=15 Score=32.00 Aligned_cols=78 Identities=14% Similarity=0.116 Sum_probs=55.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC--C---ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHh
Q 038429 158 NSLIHFYAVCGDLAMAYCVFVMIGK--K---DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDE-VTMVVVLSACA 231 (258)
Q Consensus 158 ~~li~~~~~~g~~~~a~~~~~~m~~--~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~t~~~li~~~~ 231 (258)
-.|-.+.-+.|+.++|.+.|.+|.+ | +......||+++...+...++..++.+-.+...+.+. ..|+..+-.+.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 4566667789999999999998854 4 3346778999999999999999999887554432222 34766654444
Q ss_pred ccCC
Q 038429 232 KKRD 235 (258)
Q Consensus 232 ~~g~ 235 (258)
..|+
T Consensus 343 av~d 346 (539)
T PF04184_consen 343 AVGD 346 (539)
T ss_pred hhcc
Confidence 4443
No 281
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=83.49 E-value=5 Score=22.56 Aligned_cols=35 Identities=9% Similarity=0.132 Sum_probs=28.4
Q ss_pred HHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 038429 195 FVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSA 229 (258)
Q Consensus 195 ~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~ 229 (258)
..+.|-..++..++++|.+.|+..+...|..+++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 35667788899999999999998888888877754
No 282
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=83.20 E-value=13 Score=33.59 Aligned_cols=50 Identities=14% Similarity=0.095 Sum_probs=25.6
Q ss_pred HHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc
Q 038429 91 WNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF 150 (258)
Q Consensus 91 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 150 (258)
.-.+..-+-+...+--|-++|..| - -...++......++|++|..+-+..
T Consensus 750 l~~~a~ylk~l~~~gLAaeIF~k~-g---------D~ksiVqlHve~~~W~eAFalAe~h 799 (1081)
T KOG1538|consen 750 LLLCATYLKKLDSPGLAAEIFLKM-G---------DLKSLVQLHVETQRWDEAFALAEKH 799 (1081)
T ss_pred HHHHHHHHhhccccchHHHHHHHh-c---------cHHHHhhheeecccchHhHhhhhhC
Confidence 333333334444455555555555 1 1234555566666666666665555
No 283
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=83.13 E-value=7.4 Score=32.40 Aligned_cols=212 Identities=14% Similarity=0.012 Sum_probs=130.1
Q ss_pred ccchhhHHHHHHHHHhh--ccCcchhhhhhhhhhhhccCCCChHHHHHHh-ccC------CC--CChhhHHHHHHHHhcC
Q 038429 33 LTNQKQLKRIHAQMLST--DFFFDPYSASKLFTPCALSTFSSLEYARKMF-DQI------PQ--PNLYTWNTLIRAYSSS 101 (258)
Q Consensus 33 ~~~~~~a~~~~~~m~~~--~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~-~~m------~~--~~~~~~~~li~~~~~~ 101 (258)
.++.+++...+...... +..---.++..+..+.++.| .+++++..- .+| .. .-..+|-.+-+++-+.
T Consensus 19 s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g--~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l 96 (518)
T KOG1941|consen 19 SNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMG--RYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKL 96 (518)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666655432 22223446777888888888 776664431 111 11 2345677777777777
Q ss_pred CChhhHHHHHHHhHhcCCCCCCc---chHHHHHHHhcCcCCcchhhhhhhcc----------cCchhHHHHHHHHHHhcC
Q 038429 102 DEPIQSFMIFLQLVYNSPYFPNE---FTLPFVIKAAARPVQFRVGQAIHGMF----------EDDLVISNSLIHFYAVCG 168 (258)
Q Consensus 102 g~~~~a~~~~~~m~~~~~~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~----------~~~~~~~~~li~~~~~~g 168 (258)
-++.+++.+-+.-..-.|..|.. ....++-+++...+.++.+.+-|+.. .....+|..|-..|.+..
T Consensus 97 ~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~ 176 (518)
T KOG1941|consen 97 CEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK 176 (518)
T ss_pred HHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH
Confidence 77777777665542333443421 23345666667777788777777766 334568889999999999
Q ss_pred CHHHHHHHHHhcC-------CCChh-hHH-----HHHHHHHcCCChHHHHHHHHHHHH----cCCCC-ChhhHHHHHHHH
Q 038429 169 DLAMAYCVFVMIG-------KKDVV-SWN-----SMISGFVEGGFFEKAIELYREMEV----ENVKP-DEVTMVVVLSAC 230 (258)
Q Consensus 169 ~~~~a~~~~~~m~-------~~~~~-~~~-----~li~~~~~~g~~~~a~~~~~~m~~----~~~~p-~~~t~~~li~~~ 230 (258)
++++|.-+....- -.|.. -|. .|--++...|...+|.+.-++..+ .|-+| -......+-+.|
T Consensus 177 D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIy 256 (518)
T KOG1941|consen 177 DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIY 256 (518)
T ss_pred hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 9998876554322 12322 222 233466777888888887776543 34333 233456778889
Q ss_pred hccCChhHHHHHHHHH
Q 038429 231 AKKRDLEFGIWVSSHI 246 (258)
Q Consensus 231 ~~~g~~~~a~~~~~~m 246 (258)
...|+.+.|..=+++.
T Consensus 257 R~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 257 RSRGDLERAFRRYEQA 272 (518)
T ss_pred HhcccHhHHHHHHHHH
Confidence 9999999988777754
No 284
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=83.07 E-value=1.5 Score=22.57 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=15.7
Q ss_pred cCchhHHHHHHHHHHhcCCHHHHH
Q 038429 151 EDDLVISNSLIHFYAVCGDLAMAY 174 (258)
Q Consensus 151 ~~~~~~~~~li~~~~~~g~~~~a~ 174 (258)
+.+...|+.+-..|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 445566777777777777776664
No 285
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=82.85 E-value=5.9 Score=32.21 Aligned_cols=84 Identities=13% Similarity=0.175 Sum_probs=58.9
Q ss_pred CHHHHHHHHHhcCC-------CChhhHHHHHHHHHcCCC----hHHHHHHHHHHHHcCCCCChh--hHHHHHHHHhccCC
Q 038429 169 DLAMAYCVFVMIGK-------KDVVSWNSMISGFVEGGF----FEKAIELYREMEVENVKPDEV--TMVVVLSACAKKRD 235 (258)
Q Consensus 169 ~~~~a~~~~~~m~~-------~~~~~~~~li~~~~~~g~----~~~a~~~~~~m~~~~~~p~~~--t~~~li~~~~~~g~ 235 (258)
...+|..+|+.|++ ++-.++..|+.. ..++ .+.++.+|+.+...|+..+.. ...+++..+....+
T Consensus 118 ~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~ 195 (297)
T PF13170_consen 118 IIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQ 195 (297)
T ss_pred HHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccch
Confidence 36789999999986 366677777665 3333 467788889999988876543 44555554443333
Q ss_pred --hhHHHHHHHHHHHcCCccc
Q 038429 236 --LEFGIWVSSHIEKNGIKMD 254 (258)
Q Consensus 236 --~~~a~~~~~~m~~~g~~p~ 254 (258)
+.++.++++.+.+.|+++.
T Consensus 196 ~~v~r~~~l~~~l~~~~~kik 216 (297)
T PF13170_consen 196 EKVARVIELYNALKKNGVKIK 216 (297)
T ss_pred HHHHHHHHHHHHHHHcCCccc
Confidence 4478899999999998754
No 286
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=82.82 E-value=3.4 Score=27.21 Aligned_cols=32 Identities=16% Similarity=0.199 Sum_probs=14.3
Q ss_pred CCCCCCcchHHHHHHHhcCcCCcchhhhhhhc
Q 038429 118 SPYFPNEFTLPFVIKAAARPVQFRVGQAIHGM 149 (258)
Q Consensus 118 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 149 (258)
..+.|++....+.+++|-+.+++..|.++++.
T Consensus 36 ~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~ 67 (103)
T cd00923 36 YDLVPEPKVIEAALRACRRVNDFALAVRILEA 67 (103)
T ss_pred cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 34444444444444444444444444444443
No 287
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=82.28 E-value=2.5 Score=23.29 Aligned_cols=26 Identities=19% Similarity=0.101 Sum_probs=19.2
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHcC
Q 038429 225 VVLSACAKKRDLEFGIWVSSHIEKNG 250 (258)
Q Consensus 225 ~li~~~~~~g~~~~a~~~~~~m~~~g 250 (258)
.|-.+|...|+.+.|.++++++...|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 35667788888888888888877544
No 288
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=82.11 E-value=8.1 Score=24.88 Aligned_cols=65 Identities=8% Similarity=0.117 Sum_probs=42.6
Q ss_pred HHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCCCChhhHHHHHHHHhcCCChhhH
Q 038429 39 LKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQS 107 (258)
Q Consensus 39 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a 107 (258)
+.++++.+...|+. +......+-.+-...| +.+.|.+++..++ +....|..++.++...|+-+-|
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g--~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHG--NESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccC--cHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 35566667777743 4444444444334455 7888888888887 7777788888888777765444
No 289
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=81.27 E-value=3.8 Score=19.41 Aligned_cols=20 Identities=20% Similarity=0.087 Sum_probs=10.3
Q ss_pred HHHHHHHhcCCHHHHHHHHH
Q 038429 159 SLIHFYAVCGDLAMAYCVFV 178 (258)
Q Consensus 159 ~li~~~~~~g~~~~a~~~~~ 178 (258)
.+-..+...|++++|..+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 34445555555555555543
No 290
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=80.48 E-value=2.8 Score=27.90 Aligned_cols=27 Identities=11% Similarity=0.060 Sum_probs=9.8
Q ss_pred hhhHHHHHHHHhcCCChhhHHHHHHHh
Q 038429 88 LYTWNTLIRAYSSSDEPIQSFMIFLQL 114 (258)
Q Consensus 88 ~~~~~~li~~~~~~g~~~~a~~~~~~m 114 (258)
+....+.+++|.+-+++.-|.++|+..
T Consensus 45 P~ii~aALrAcRRvND~a~AVR~lE~i 71 (108)
T PF02284_consen 45 PKIIEAALRACRRVNDFALAVRILEGI 71 (108)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 333333333333333333333333333
No 291
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=80.45 E-value=4.5 Score=20.24 Aligned_cols=29 Identities=10% Similarity=-0.143 Sum_probs=19.1
Q ss_pred hhHHHHHHHHhccCChhHHHHHHHHHHHc
Q 038429 221 VTMVVVLSACAKKRDLEFGIWVSSHIEKN 249 (258)
Q Consensus 221 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 249 (258)
.+|..+...+...|++++|...|++..+.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 35666667777777777777777776553
No 292
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=80.42 E-value=12 Score=28.93 Aligned_cols=69 Identities=14% Similarity=0.090 Sum_probs=48.5
Q ss_pred hHHHHHHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC------CChhhHHHHHHH
Q 038429 126 TLPFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK------KDVVSWNSMISG 194 (258)
Q Consensus 126 ~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~------~~~~~~~~li~~ 194 (258)
|.+.-++.+.+.+.+.++....+.- +.|...-..+++.||-.|++++|..=++..-+ +...+|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 4556667777778888877766555 66677788889999999999998866554332 244567777754
No 293
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=80.28 E-value=19 Score=25.89 Aligned_cols=14 Identities=21% Similarity=0.347 Sum_probs=7.3
Q ss_pred CCChhhHHHHHHHh
Q 038429 101 SDEPIQSFMIFLQL 114 (258)
Q Consensus 101 ~g~~~~a~~~~~~m 114 (258)
.++++++..+++.|
T Consensus 23 ~~d~~D~e~lLdAL 36 (153)
T TIGR02561 23 SADPYDAQAMLDAL 36 (153)
T ss_pred cCCHHHHHHHHHHH
Confidence 44555555555555
No 294
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.98 E-value=22 Score=26.46 Aligned_cols=126 Identities=9% Similarity=0.013 Sum_probs=62.2
Q ss_pred ChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcc-hHHHHHHHhcCcCCcchhhhhhhcc-----cCchh-HHHH
Q 038429 87 NLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF-TLPFVIKAAARPVQFRVGQAIHGMF-----EDDLV-ISNS 159 (258)
Q Consensus 87 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~-----~~~~~-~~~~ 159 (258)
....|..-++ +++.+..++|+.-|.++ .+.|...=+. .---+-......|+...|..-|..+ .|-+. -..-
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~l-ektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~AR 135 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDL-EKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLAR 135 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHH-HhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHH
Confidence 3344444443 34445567777777776 4444321110 1111222345566666666666666 12111 1111
Q ss_pred HHH--HHHhcCCHHHHHHHHHhcCCC-C---hhhHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 038429 160 LIH--FYAVCGDLAMAYCVFVMIGKK-D---VVSWNSMISGFVEGGFFEKAIELYREMEVE 214 (258)
Q Consensus 160 li~--~~~~~g~~~~a~~~~~~m~~~-~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 214 (258)
|=. .+...|.+++...-.+.+-.+ + ...=..|--+-.+.|++.+|.+.|..+...
T Consensus 136 lraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 136 LRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 111 224566677666666554332 1 112234555556777888888887776654
No 295
>PRK09687 putative lyase; Provisional
Probab=79.54 E-value=31 Score=27.81 Aligned_cols=183 Identities=8% Similarity=-0.103 Sum_probs=93.7
Q ss_pred cchhhhhhhhhhhhccCCCC----hHHHHHHhccC--CCCChhhHHHHHHHHhcCCCh-----hhHHHHHHHhHhcCCCC
Q 038429 53 FDPYSASKLFTPCALSTFSS----LEYARKMFDQI--PQPNLYTWNTLIRAYSSSDEP-----IQSFMIFLQLVYNSPYF 121 (258)
Q Consensus 53 ~~~~~~~~li~~~~~~~~~~----~~~a~~~~~~m--~~~~~~~~~~li~~~~~~g~~-----~~a~~~~~~m~~~~~~~ 121 (258)
+|+..-...+.+++..| + ..++...+..+ ..++...-...+.+++..+.. ..+...+... . .-
T Consensus 66 ~d~~vR~~A~~aLg~lg--~~~~~~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~-~---~D 139 (280)
T PRK09687 66 KNPIERDIGADILSQLG--MAKRCQDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQIT-A---FD 139 (280)
T ss_pred CCHHHHHHHHHHHHhcC--CCccchHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHH-h---hC
Confidence 34445555555555555 3 23344444433 235555555555555554321 1222333222 1 11
Q ss_pred CCcchHHHHHHHhcCcCCcchhhhhhhcc-cCchhHHHHHHHHHHhcC-CHHHHHH-HHHhcCCCChhhHHHHHHHHHcC
Q 038429 122 PNEFTLPFVIKAAARPVQFRVGQAIHGMF-EDDLVISNSLIHFYAVCG-DLAMAYC-VFVMIGKKDVVSWNSMISGFVEG 198 (258)
Q Consensus 122 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~~~li~~~~~~g-~~~~a~~-~~~~m~~~~~~~~~~li~~~~~~ 198 (258)
++..+-...+.++++.++.+....+...+ .+|..+-...+.++++.+ ....+.. +...+..+|..+-...+.++++.
T Consensus 140 ~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 140 KSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQDKNEEIRIEAIIGLALR 219 (280)
T ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence 23344445566666666544444444444 455555555666666543 1223333 33444556777777777788887
Q ss_pred CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHH
Q 038429 199 GFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEK 248 (258)
Q Consensus 199 g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 248 (258)
|+. .|...+-+..+.+ + .....+.++...|+. +|...+..+.+
T Consensus 220 ~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 220 KDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred CCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHh
Confidence 774 4444444444432 2 244677777777775 57777777665
No 296
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.43 E-value=35 Score=31.79 Aligned_cols=147 Identities=7% Similarity=0.021 Sum_probs=74.8
Q ss_pred chhhhhhhhhhhh----ccCCCChHHHHHHhccCCC-CChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHH
Q 038429 54 DPYSASKLFTPCA----LSTFSSLEYARKMFDQIPQ-PNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLP 128 (258)
Q Consensus 54 ~~~~~~~li~~~~----~~~~~~~~~a~~~~~~m~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~ 128 (258)
+......+...|+ +.| ++++|...+-+-.. .++ ..+|.-|.....+.+-..+++.+ .+.|+ .+...-+
T Consensus 363 d~d~~~~i~~kYgd~Ly~Kg--df~~A~~qYI~tI~~le~---s~Vi~kfLdaq~IknLt~YLe~L-~~~gl-a~~dhtt 435 (933)
T KOG2114|consen 363 DEDTLAEIHRKYGDYLYGKG--DFDEATDQYIETIGFLEP---SEVIKKFLDAQRIKNLTSYLEAL-HKKGL-ANSDHTT 435 (933)
T ss_pred CHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHcccCCh---HHHHHHhcCHHHHHHHHHHHHHH-HHccc-ccchhHH
Confidence 3444444444443 456 88888666644322 222 23566666666666666777777 66664 3445566
Q ss_pred HHHHHhcCcCCcchhhhhhhcccCchhH--HHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHcCCChHHHHH
Q 038429 129 FVIKAAARPVQFRVGQAIHGMFEDDLVI--SNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIE 206 (258)
Q Consensus 129 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~ 206 (258)
.|+++|.+.++.+.-....+..+..... ....+..+-+.+-.++|.-+-..-.. +....+.++ -..+++++|.+
T Consensus 436 lLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~-he~vl~ill---e~~~ny~eAl~ 511 (933)
T KOG2114|consen 436 LLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKK-HEWVLDILL---EDLHNYEEALR 511 (933)
T ss_pred HHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhcc-CHHHHHHHH---HHhcCHHHHHH
Confidence 7788888877776655555444211111 23344444444444444444433322 222223332 23345566655
Q ss_pred HHHHH
Q 038429 207 LYREM 211 (258)
Q Consensus 207 ~~~~m 211 (258)
++..|
T Consensus 512 yi~sl 516 (933)
T KOG2114|consen 512 YISSL 516 (933)
T ss_pred HHhcC
Confidence 55443
No 297
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=79.09 E-value=21 Score=25.68 Aligned_cols=46 Identities=13% Similarity=0.291 Sum_probs=20.4
Q ss_pred cCCHHHHHHHHHhcC--CC---ChhhHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 038429 167 CGDLAMAYCVFVMIG--KK---DVVSWNSMISGFVEGGFFEKAIELYREMEVE 214 (258)
Q Consensus 167 ~g~~~~a~~~~~~m~--~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 214 (258)
.++.+++..+++.|. .| ...+|...| +...|+|++|.++|++..+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhcc
Confidence 445555555554443 12 222333332 24445555555555555443
No 298
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=78.80 E-value=5.4 Score=19.77 Aligned_cols=28 Identities=11% Similarity=-0.155 Sum_probs=19.2
Q ss_pred hHHHHHHHHhccCChhHHHHHHHHHHHc
Q 038429 222 TMVVVLSACAKKRDLEFGIWVSSHIEKN 249 (258)
Q Consensus 222 t~~~li~~~~~~g~~~~a~~~~~~m~~~ 249 (258)
.+..+-..+.+.|++++|.+.+++..+.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4556667777778888888888777653
No 299
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=78.54 E-value=5 Score=23.95 Aligned_cols=46 Identities=15% Similarity=0.125 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHH
Q 038429 201 FEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEK 248 (258)
Q Consensus 201 ~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 248 (258)
+++..++++.+... +-|....-.+|.++...|++++|.++++++.+
T Consensus 6 ~~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 6 LEELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44445555555432 23555666777777777888777777776643
No 300
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.37 E-value=22 Score=31.87 Aligned_cols=24 Identities=25% Similarity=0.209 Sum_probs=11.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHH
Q 038429 155 VISNSLIHFYAVCGDLAMAYCVFV 178 (258)
Q Consensus 155 ~~~~~li~~~~~~g~~~~a~~~~~ 178 (258)
.-|..|-++....|++..|.+.|.
T Consensus 667 ~Kw~~Lg~~al~~~~l~lA~EC~~ 690 (794)
T KOG0276|consen 667 VKWRQLGDAALSAGELPLASECFL 690 (794)
T ss_pred HHHHHHHHHHhhcccchhHHHHHH
Confidence 344445555555555555555544
No 301
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=78.29 E-value=4.7 Score=32.51 Aligned_cols=37 Identities=16% Similarity=0.211 Sum_probs=27.6
Q ss_pred CCCChhh-HHHHHHHHhccCChhHHHHHHHHHHHcCCc
Q 038429 216 VKPDEVT-MVVVLSACAKKRDLEFGIWVSSHIEKNGIK 252 (258)
Q Consensus 216 ~~p~~~t-~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 252 (258)
+.||..+ |+..|+...+.||+++|+.+++|.++.|+.
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 4466554 578888888888888888888888877764
No 302
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=78.22 E-value=14 Score=27.79 Aligned_cols=32 Identities=19% Similarity=-0.056 Sum_probs=22.8
Q ss_pred CCCChhhHHHHHHHHhccCChhHHHHHHHHHH
Q 038429 216 VKPDEVTMVVVLSACAKKRDLEFGIWVSSHIE 247 (258)
Q Consensus 216 ~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 247 (258)
..|+..+|..++.++...|+.++|.+..+++.
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45777777777777777777777777776664
No 303
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=77.96 E-value=6.2 Score=19.65 Aligned_cols=27 Identities=7% Similarity=-0.125 Sum_probs=19.0
Q ss_pred hHHHHHHHHhccCChhHHHHHHHHHHH
Q 038429 222 TMVVVLSACAKKRDLEFGIWVSSHIEK 248 (258)
Q Consensus 222 t~~~li~~~~~~g~~~~a~~~~~~m~~ 248 (258)
+|..+-..+...|++++|...|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455666677777778777777776654
No 304
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=77.89 E-value=19 Score=24.35 Aligned_cols=29 Identities=17% Similarity=0.371 Sum_probs=25.7
Q ss_pred hhhHHHHHHHHHcCCChHHHHHHHHHHHH
Q 038429 185 VVSWNSMISGFVEGGFFEKAIELYREMEV 213 (258)
Q Consensus 185 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 213 (258)
..-|..|+.-|...|..++|.+++.+...
T Consensus 39 ~~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 39 HGKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred cCCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 34689999999999999999999998877
No 305
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.17 E-value=32 Score=28.52 Aligned_cols=136 Identities=13% Similarity=0.048 Sum_probs=89.5
Q ss_pred ChHHHHHHhccCCC---CChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcch--H--HHHHHHhcCcCCcchhh
Q 038429 72 SLEYARKMFDQIPQ---PNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFT--L--PFVIKAAARPVQFRVGQ 144 (258)
Q Consensus 72 ~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~--~--~~ll~~~~~~~~~~~a~ 144 (258)
++.+|-..++++.+ .|..+++--=.++.-.|+.+.....++++..+.+ ||... | ....-++...|-+++|+
T Consensus 118 ~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn--~dlp~~sYv~GmyaFgL~E~g~y~dAE 195 (491)
T KOG2610|consen 118 KHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWN--ADLPCYSYVHGMYAFGLEECGIYDDAE 195 (491)
T ss_pred cccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccC--CCCcHHHHHHHHHHhhHHHhccchhHH
Confidence 44444444444432 4666777777788889999998888888843322 33322 2 34445567788899998
Q ss_pred hhhhcc----cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC--------ChhhHHHHHHHHHcCCChHHHHHHHHH
Q 038429 145 AIHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKK--------DVVSWNSMISGFVEGGFFEKAIELYRE 210 (258)
Q Consensus 145 ~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--------~~~~~~~li~~~~~~g~~~~a~~~~~~ 210 (258)
..-+.. +.|.....++-+.+--.|++.++.++...-... ...=|... -.+...+.++.|+++|++
T Consensus 196 k~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~A-l~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 196 KQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTA-LFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHH-HhhhcccchhHHHHHHHH
Confidence 887776 667777778888888899999999887665431 11112222 233455889999999865
No 306
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=77.17 E-value=3.6 Score=28.89 Aligned_cols=33 Identities=21% Similarity=0.250 Sum_probs=25.1
Q ss_pred HcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 038429 196 VEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230 (258)
Q Consensus 196 ~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~ 230 (258)
...|.-.+|..+|++|.+.|-+||. |+.|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 3446677899999999999988874 66676654
No 307
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=76.96 E-value=37 Score=27.26 Aligned_cols=115 Identities=10% Similarity=0.024 Sum_probs=57.4
Q ss_pred hccCCCChHHHHHHhccCCC------CChh------hHHHHHHHHhcCCChhhHHHHHHHhHhc----C---CCCCCc--
Q 038429 66 ALSTFSSLEYARKMFDQIPQ------PNLY------TWNTLIRAYSSSDEPIQSFMIFLQLVYN----S---PYFPNE-- 124 (258)
Q Consensus 66 ~~~~~~~~~~a~~~~~~m~~------~~~~------~~~~li~~~~~~g~~~~a~~~~~~m~~~----~---~~~p~~-- 124 (258)
.+.| +++.|..++.+... |+.. .||.=...+.+..++++|...+++...- . ...|+.
T Consensus 4 ~~~~--~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~e 81 (278)
T PF08631_consen 4 WKQG--DLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSE 81 (278)
T ss_pred hhhC--CHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHH
Confidence 3456 88888888877653 2211 2444444444433888888777665211 1 112222
Q ss_pred ---chHHHHHHHhcCcCCcchhhh---hhhcc---cCc-hhHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 038429 125 ---FTLPFVIKAAARPVQFRVGQA---IHGMF---EDD-LVISNSLIHFYAVCGDLAMAYCVFVMIGK 182 (258)
Q Consensus 125 ---~~~~~ll~~~~~~~~~~~a~~---~~~~~---~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 182 (258)
.++..++.++...+..+...+ +.+.+ -|+ ..++-.-++.+.+.++.+.+.+++..|..
T Consensus 82 lr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~ 149 (278)
T PF08631_consen 82 LRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIR 149 (278)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHH
Confidence 234555556655555443322 22223 222 33333445555555566666666655543
No 308
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=76.58 E-value=4.9 Score=19.72 Aligned_cols=24 Identities=17% Similarity=0.037 Sum_probs=13.5
Q ss_pred HHHHHhccCChhHHHHHHHHHHHc
Q 038429 226 VLSACAKKRDLEFGIWVSSHIEKN 249 (258)
Q Consensus 226 li~~~~~~g~~~~a~~~~~~m~~~ 249 (258)
+..++.+.|+.++|.+.|+++.+.
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHH
Confidence 334455556666666666665543
No 309
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=76.55 E-value=21 Score=25.51 Aligned_cols=54 Identities=19% Similarity=0.158 Sum_probs=44.1
Q ss_pred HHcCCChHHHHHHHHHHHHcCCCC---ChhhHHHHHHHHhccCChhHHHHHHHHHHHc
Q 038429 195 FVEGGFFEKAIELYREMEVENVKP---DEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249 (258)
Q Consensus 195 ~~~~g~~~~a~~~~~~m~~~~~~p---~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 249 (258)
..+.|++++|.+.|+.+... .+. ....---|+.++.+.|++++|...+++.++.
T Consensus 20 ~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 35679999999999999876 222 3355778899999999999999999988765
No 310
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=76.42 E-value=10 Score=31.33 Aligned_cols=40 Identities=10% Similarity=-0.081 Sum_probs=18.6
Q ss_pred hcCcCCcchhhhhhhcc---cC-chhHHHHHHHHHHhcCCHHHH
Q 038429 134 AARPVQFRVGQAIHGMF---ED-DLVISNSLIHFYAVCGDLAMA 173 (258)
Q Consensus 134 ~~~~~~~~~a~~~~~~~---~~-~~~~~~~li~~~~~~g~~~~a 173 (258)
|.+.|.+++|..++..- .| +.+++..-..+|.+..++..|
T Consensus 107 yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~A 150 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQA 150 (536)
T ss_pred hhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHH
Confidence 34444555555544443 22 444444444555554444433
No 311
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=76.06 E-value=16 Score=24.67 Aligned_cols=75 Identities=11% Similarity=0.095 Sum_probs=47.8
Q ss_pred Ccchhhhhhhcc--cCchh--HHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 038429 139 QFRVGQAIHGMF--EDDLV--ISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214 (258)
Q Consensus 139 ~~~~a~~~~~~~--~~~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 214 (258)
..++|..|.+.+ .++.. +--+-+..+...|++++|...-.....||...|-+|-. .+.|-.+++...+.++...
T Consensus 21 cH~EA~tIa~wL~~~~~~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~~ 98 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGEMEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLASS 98 (116)
T ss_dssp -HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 466777777777 33322 33334566788999999955555566688888877754 5778888888888877665
Q ss_pred C
Q 038429 215 N 215 (258)
Q Consensus 215 ~ 215 (258)
|
T Consensus 99 g 99 (116)
T PF09477_consen 99 G 99 (116)
T ss_dssp S
T ss_pred C
Confidence 4
No 312
>PHA02875 ankyrin repeat protein; Provisional
Probab=74.71 E-value=43 Score=28.44 Aligned_cols=175 Identities=14% Similarity=0.111 Sum_probs=95.2
Q ss_pred hhhccCCCChHHHHHHhccCCCCChhh--HHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcc--hHHHHHHHhcCcCC
Q 038429 64 PCALSTFSSLEYARKMFDQIPQPNLYT--WNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF--TLPFVIKAAARPVQ 139 (258)
Q Consensus 64 ~~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~--~~~~ll~~~~~~~~ 139 (258)
.....| +.+-+..+++....++... ..+.+...++.|+.+- .+.+ .+.|..|+.. .....+...+..|+
T Consensus 8 ~A~~~g--~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~----v~~L-l~~ga~~~~~~~~~~t~L~~A~~~g~ 80 (413)
T PHA02875 8 DAILFG--ELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEA----IKLL-MKHGAIPDVKYPDIESELHDAVEEGD 80 (413)
T ss_pred HHHHhC--CHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHH----HHHH-HhCCCCccccCCCcccHHHHHHHCCC
Confidence 344556 8888888887655443321 2344555566777543 3334 4445555432 12344566677888
Q ss_pred cchhhhhhhcc--cCch--hHHHHHHHHHHhcCCHHHHHHHHHhcCCCC---hhhHHHHHHHHHcCCChHHHHHHHHHHH
Q 038429 140 FRVGQAIHGMF--EDDL--VISNSLIHFYAVCGDLAMAYCVFVMIGKKD---VVSWNSMISGFVEGGFFEKAIELYREME 212 (258)
Q Consensus 140 ~~~a~~~~~~~--~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~ 212 (258)
.+.+..+++.- ..+. ..-.+.+...+..|+.+-+..+++.-..++ ....+. +...+..|+.+-+..++
T Consensus 81 ~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tp-Lh~A~~~~~~~~v~~Ll---- 155 (413)
T PHA02875 81 VKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSP-LHLAVMMGDIKGIELLI---- 155 (413)
T ss_pred HHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCH-HHHHHHcCCHHHHHHHH----
Confidence 88887777654 1111 112345566677888887777776544442 223333 44445677766554444
Q ss_pred HcCCCCC---hhhHHHHHHHHhccCChhHHHHHHHHHHHcCCcccc
Q 038429 213 VENVKPD---EVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255 (258)
Q Consensus 213 ~~~~~p~---~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 255 (258)
+.|..++ ..-.+.|..+ +..|+.+ +++.+.+.|..|+.
T Consensus 156 ~~g~~~~~~d~~g~TpL~~A-~~~g~~e----iv~~Ll~~ga~~n~ 196 (413)
T PHA02875 156 DHKACLDIEDCCGCTPLIIA-MAKGDIA----ICKMLLDSGANIDY 196 (413)
T ss_pred hcCCCCCCCCCCCCCHHHHH-HHcCCHH----HHHHHHhCCCCCCc
Confidence 4454433 2233444444 4456654 45556667766653
No 313
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=74.32 E-value=24 Score=30.48 Aligned_cols=121 Identities=10% Similarity=0.080 Sum_probs=71.9
Q ss_pred ChHHHHHHhccCCC---CC------hhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHh--cCcCCc
Q 038429 72 SLEYARKMFDQIPQ---PN------LYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAA--ARPVQF 140 (258)
Q Consensus 72 ~~~~a~~~~~~m~~---~~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~--~~~~~~ 140 (258)
++.+++.+|.+.-+ .+ ...-+-++++|...+ ++.....+....+..| ...|-.+..++ -+.+.+
T Consensus 21 ~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~n-ld~Me~~l~~l~~~~~----~s~~l~LF~~L~~Y~~k~~ 95 (549)
T PF07079_consen 21 KFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNN-LDLMEKQLMELRQQFG----KSAYLPLFKALVAYKQKEY 95 (549)
T ss_pred hhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhh-HHHHHHHHHHHHHhcC----CchHHHHHHHHHHHHhhhH
Confidence 88889888887753 11 223456777777643 4555555555534333 23344444443 345566
Q ss_pred chhhhhhhcc-------------------cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--------CChhhHHHHHH
Q 038429 141 RVGQAIHGMF-------------------EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK--------KDVVSWNSMIS 193 (258)
Q Consensus 141 ~~a~~~~~~~-------------------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--------~~~~~~~~li~ 193 (258)
+.|...+..- -+|-..=+..++++...|++.++..++++|.+ -+..+||-++-
T Consensus 96 ~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vl 175 (549)
T PF07079_consen 96 RKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVL 175 (549)
T ss_pred HHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHH
Confidence 6665544332 22334445667777788888888888777653 27777777665
Q ss_pred HHHc
Q 038429 194 GFVE 197 (258)
Q Consensus 194 ~~~~ 197 (258)
.+++
T Consensus 176 mlsr 179 (549)
T PF07079_consen 176 MLSR 179 (549)
T ss_pred HHhH
Confidence 5554
No 314
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=73.58 E-value=49 Score=27.14 Aligned_cols=33 Identities=6% Similarity=0.001 Sum_probs=28.3
Q ss_pred CChhhHHHHHHHHhccCChhHHHHHHHHHHHcC
Q 038429 218 PDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250 (258)
Q Consensus 218 p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 250 (258)
....+|..+.+.+.+.|.++.|...+..+.+.+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~ 176 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLN 176 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccC
Confidence 345689999999999999999999999987644
No 315
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=73.35 E-value=12 Score=23.68 Aligned_cols=47 Identities=9% Similarity=0.014 Sum_probs=33.2
Q ss_pred cCCChHHHHHHHHHHHHcCCCC-Ch-hhHHHHHHHHhccCChhHHHHHH
Q 038429 197 EGGFFEKAIELYREMEVENVKP-DE-VTMVVVLSACAKKRDLEFGIWVS 243 (258)
Q Consensus 197 ~~g~~~~a~~~~~~m~~~~~~p-~~-~t~~~li~~~~~~g~~~~a~~~~ 243 (258)
..++..+|+..|+...+.-..| +. .++..|+.+++..|++.++.++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567788888888877654333 22 46788888888888888776543
No 316
>PF13934 ELYS: Nuclear pore complex assembly
Probab=72.55 E-value=43 Score=26.01 Aligned_cols=22 Identities=18% Similarity=0.283 Sum_probs=10.3
Q ss_pred HHHHHHhcCCHHHHHHHHHhcC
Q 038429 160 LIHFYAVCGDLAMAYCVFVMIG 181 (258)
Q Consensus 160 li~~~~~~g~~~~a~~~~~~m~ 181 (258)
++.++.+.|+.+.|..++..++
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~~ 135 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAVG 135 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhcC
Confidence 4444444455555555544433
No 317
>PRK09687 putative lyase; Provisional
Probab=72.25 E-value=50 Score=26.62 Aligned_cols=188 Identities=11% Similarity=-0.050 Sum_probs=120.8
Q ss_pred CcchhhhhhhhhhhhccCCCChHHHHHHhccCCCCChhhHHHHHHHHhcCCCh----hhHHHHHHHhHhcCCCCCCcchH
Q 038429 52 FFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEP----IQSFMIFLQLVYNSPYFPNEFTL 127 (258)
Q Consensus 52 ~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~----~~a~~~~~~m~~~~~~~p~~~~~ 127 (258)
.+|..+.-..+.++...| ..+....+..-+..+|...-...+.++++.|+. ++++..+..+ ... .|+..+-
T Consensus 34 d~d~~vR~~A~~aL~~~~--~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l-~~~--D~d~~VR 108 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRG--GQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNL-ALE--DKSACVR 108 (280)
T ss_pred CCCHHHHHHHHHHHHhcC--cchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHH-Hhc--CCCHHHH
Confidence 566777777888888877 554444444444567777778888888988874 4577777766 222 3555666
Q ss_pred HHHHHHhcCcCCcc-----hhhhhhhc-c-cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHcCC-
Q 038429 128 PFVIKAAARPVQFR-----VGQAIHGM-F-EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGG- 199 (258)
Q Consensus 128 ~~ll~~~~~~~~~~-----~a~~~~~~-~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g- 199 (258)
...+.++++.+... .+...+.. + .++..+--..+.++++.|+.+....+...+..+|...-...+.+++..+
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~ 188 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKY 188 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCC
Confidence 67777776664322 12222222 2 5577788888999999988655555556666677777777777777654
Q ss_pred ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHH
Q 038429 200 FFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEK 248 (258)
Q Consensus 200 ~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 248 (258)
.-..+...+..+.. .+|...-...+.++.+.|+. .|...+-...+
T Consensus 189 ~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~ 233 (280)
T PRK09687 189 DNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELK 233 (280)
T ss_pred CCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHc
Confidence 23456555555553 35777778888888888874 45544444443
No 318
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=71.73 E-value=76 Score=28.50 Aligned_cols=186 Identities=13% Similarity=0.015 Sum_probs=99.3
Q ss_pred cchhhhhhhhhhhhccCCCChHHHHHHhccCCCCC-hhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHH
Q 038429 53 FDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPN-LYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVI 131 (258)
Q Consensus 53 ~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll 131 (258)
+....+..|+..+... +.+.-.++++++.. . ...+..++++....|-.....-+.+.+ +...+.+. ..-..+.
T Consensus 308 ~~~~~f~~lv~~lR~~---~~e~l~~l~~~~~~-~~~~~r~~~~Dal~~~GT~~a~~~i~~~i-~~~~~~~~-ea~~~~~ 381 (574)
T smart00638 308 PAAAKFLRLVRLLRTL---SEEQLEQLWRQLYE-KKKKARRIFLDAVAQAGTPPALKFIKQWI-KNKKITPL-EAAQLLA 381 (574)
T ss_pred chHHHHHHHHHHHHhC---CHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCHHHHHHHHHHH-HcCCCCHH-HHHHHHH
Confidence 4566788888887766 67777777777655 4 678999999999999855554444545 66555432 2222233
Q ss_pred HHh--cCcCCcchhhhhhhcc-----cCc-------hhHHHHHHHHHHhcCCH------HHHHHHHHhc-----CCCChh
Q 038429 132 KAA--ARPVQFRVGQAIHGMF-----EDD-------LVISNSLIHFYAVCGDL------AMAYCVFVMI-----GKKDVV 186 (258)
Q Consensus 132 ~~~--~~~~~~~~a~~~~~~~-----~~~-------~~~~~~li~~~~~~g~~------~~a~~~~~~m-----~~~~~~ 186 (258)
.+. ...-..+....+++.+ .+. ..++.++++-+|..... ++..+.+... .+.|..
T Consensus 382 ~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 461 (574)
T smart00638 382 VLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEE 461 (574)
T ss_pred HHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCch
Confidence 322 2333444444554444 233 34566666666655431 2333333221 112333
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhcc--CChhHHHHHHHH
Q 038429 187 SWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKK--RDLEFGIWVSSH 245 (258)
Q Consensus 187 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~--g~~~~a~~~~~~ 245 (258)
--...|.+++..|...... .+..........+...-...+.++.+. ...+.+..++-.
T Consensus 462 ~~~~~LkaLGN~g~~~~i~-~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~ 521 (574)
T smart00638 462 EIQLYLKALGNAGHPSSIK-VLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEVLLP 521 (574)
T ss_pred heeeHHHhhhccCChhHHH-HHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 3456677777777754433 333332222223344445555665533 244445444443
No 319
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=71.24 E-value=54 Score=26.55 Aligned_cols=107 Identities=12% Similarity=0.130 Sum_probs=68.5
Q ss_pred hhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCc--chhhhhhhcc------cCchhHHHHHHHHHHhcCCHHHHHH
Q 038429 104 PIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQF--RVGQAIHGMF------EDDLVISNSLIHFYAVCGDLAMAYC 175 (258)
Q Consensus 104 ~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~--~~a~~~~~~~------~~~~~~~~~li~~~~~~g~~~~a~~ 175 (258)
+-+|+++|+....+..+--|..+...+++......+. ..-.++.+.+ .++..+...+|..+++.+++.+-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 4556666653311133555666666666665552221 1111222222 5677788888999999999999999
Q ss_pred HHHhcCC-----CChhhHHHHHHHHHcCCChHHHHHHHHH
Q 038429 176 VFVMIGK-----KDVVSWNSMISGFVEGGFFEKAIELYRE 210 (258)
Q Consensus 176 ~~~~m~~-----~~~~~~~~li~~~~~~g~~~~a~~~~~~ 210 (258)
+++.... .|...|..+|+.....|+.+-...+.++
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 9987654 3888999999999999997655555443
No 320
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=70.91 E-value=43 Score=25.36 Aligned_cols=56 Identities=9% Similarity=0.175 Sum_probs=43.9
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHcCC--------------CCChhhHHHHHHHHhccCChhHHHHHHHH
Q 038429 190 SMISGFVEGGFFEKAIELYREMEVENV--------------KPDEVTMVVVLSACAKKRDLEFGIWVSSH 245 (258)
Q Consensus 190 ~li~~~~~~g~~~~a~~~~~~m~~~~~--------------~p~~~t~~~li~~~~~~g~~~~a~~~~~~ 245 (258)
+++..|-+..+|.++.++++.|.+..+ .+--..-|.....+.+.|.+|.|..++++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 456677788889999999998866432 23445678888899999999999999883
No 321
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=70.86 E-value=19 Score=25.09 Aligned_cols=30 Identities=7% Similarity=0.092 Sum_probs=15.4
Q ss_pred CChhhHHHHHHHHHcCCChHHHHHHHHHHH
Q 038429 183 KDVVSWNSMISGFVEGGFFEKAIELYREME 212 (258)
Q Consensus 183 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 212 (258)
|+......-+.++.+-+++.-|.++|+-.+
T Consensus 82 P~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 82 PSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred CChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 444445555555555555555555554443
No 322
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=70.61 E-value=42 Score=27.79 Aligned_cols=83 Identities=14% Similarity=0.063 Sum_probs=47.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC-------CChhhHH--HHHHHHHcCCChHHHHHHHHHHHH-----cCCCCChhh
Q 038429 157 SNSLIHFYAVCGDLAMAYCVFVMIGK-------KDVVSWN--SMISGFVEGGFFEKAIELYREMEV-----ENVKPDEVT 222 (258)
Q Consensus 157 ~~~li~~~~~~g~~~~a~~~~~~m~~-------~~~~~~~--~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~t 222 (258)
...++...-+.++.++|.+.++++.+ |+.+.|- .....+...|+..++.+++++.+. .|++|+.++
T Consensus 78 vei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~ 157 (380)
T KOG2908|consen 78 VEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHS 157 (380)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhh
Confidence 33445555556677777777766642 4554433 344555567777777777777666 567665554
Q ss_pred -HHHHHHH-HhccCChhHH
Q 038429 223 -MVVVLSA-CAKKRDLEFG 239 (258)
Q Consensus 223 -~~~li~~-~~~~g~~~~a 239 (258)
|..+-.- |-+.|++...
T Consensus 158 ~fY~lssqYyk~~~d~a~y 176 (380)
T KOG2908|consen 158 SFYSLSSQYYKKIGDFASY 176 (380)
T ss_pred hHHHHHHHHHHHHHhHHHH
Confidence 4333333 3344665544
No 323
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=69.65 E-value=20 Score=27.74 Aligned_cols=57 Identities=7% Similarity=-0.038 Sum_probs=32.7
Q ss_pred HHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc
Q 038429 92 NTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF 150 (258)
Q Consensus 92 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 150 (258)
+.-++.+.+.+++.+++...++-++.+ +-|..+-..++..+|-.|+|++|..=++..
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkak--Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~ 61 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAK--PTDAGGRHFLFQLLCVAGDWEKALAQLNLA 61 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC--CccccchhHHHHHHhhcchHHHHHHHHHHH
Confidence 445566666667777776665552322 234445556666777777777665444433
No 324
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.48 E-value=1e+02 Score=29.01 Aligned_cols=170 Identities=11% Similarity=0.051 Sum_probs=97.6
Q ss_pred hhhhhhhhccCCCChHHHHHHhccCCCCChhhHHHHHHHH----hcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHh
Q 038429 59 SKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAY----SSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAA 134 (258)
Q Consensus 59 ~~li~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~----~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~ 134 (258)
..-|+.+.+.. .++.|..+-+.-. .+..+-..++..| -+.|++++|..-|-+- ... +.| +.+|.-|
T Consensus 338 e~kL~iL~kK~--ly~~Ai~LAk~~~-~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~t-I~~-le~-----s~Vi~kf 407 (933)
T KOG2114|consen 338 ETKLDILFKKN--LYKVAINLAKSQH-LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIET-IGF-LEP-----SEVIKKF 407 (933)
T ss_pred HHHHHHHHHhh--hHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH-ccc-CCh-----HHHHHHh
Confidence 34444555555 5566665544322 3444444555544 4568999998877655 111 122 2234444
Q ss_pred cCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-hhhHHHHHHHHHcCCChHHHHHHHH
Q 038429 135 ARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKD-VVSWNSMISGFVEGGFFEKAIELYR 209 (258)
Q Consensus 135 ~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~li~~~~~~g~~~~a~~~~~ 209 (258)
....++..-...++.+ -.+...-+.|+.+|.+.++.++-.++.+...+-. ..-....+..+.+.+-.++|..+-.
T Consensus 408 Ldaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~ 487 (933)
T KOG2114|consen 408 LDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLAT 487 (933)
T ss_pred cCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHH
Confidence 4433333333333333 4567788899999999999999888887655211 1125567777777777777776654
Q ss_pred HHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHH
Q 038429 210 EMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246 (258)
Q Consensus 210 ~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m 246 (258)
+-.. +......++.- .|++++|.+.+..+
T Consensus 488 k~~~-----he~vl~ille~---~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 488 KFKK-----HEWVLDILLED---LHNYEEALRYISSL 516 (933)
T ss_pred Hhcc-----CHHHHHHHHHH---hcCHHHHHHHHhcC
Confidence 4322 33444444433 46777777776644
No 325
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=69.36 E-value=50 Score=26.14 Aligned_cols=71 Identities=10% Similarity=0.062 Sum_probs=49.6
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCC------ChhhHHHHHHHHHcCCChHHHHHHHHHHHHc-CCCCChhhHHHHHHHHh
Q 038429 160 LIHFYAVCGDLAMAYCVFVMIGKK------DVVSWNSMISGFVEGGFFEKAIELYREMEVE-NVKPDEVTMVVVLSACA 231 (258)
Q Consensus 160 li~~~~~~g~~~~a~~~~~~m~~~------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~t~~~li~~~~ 231 (258)
=...-.+.|++++|.+.|+.+... ...+--.++.++-+.++.++|...+++.... +-.||. -|..-|.+++
T Consensus 40 ~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~YlkgLs 117 (254)
T COG4105 40 EGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAYYLKGLS 117 (254)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHHHHHHHH
Confidence 334445679999999999988752 3445667788899999999999999998775 233433 3334444443
No 326
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=68.78 E-value=34 Score=28.60 Aligned_cols=116 Identities=10% Similarity=0.083 Sum_probs=79.4
Q ss_pred cCcCCcchhhhhhhcc--cCchhHHHHHHHHHH--------hcCCH--------HHHHHHHHhcCCC----------Chh
Q 038429 135 ARPVQFRVGQAIHGMF--EDDLVISNSLIHFYA--------VCGDL--------AMAYCVFVMIGKK----------DVV 186 (258)
Q Consensus 135 ~~~~~~~~a~~~~~~~--~~~~~~~~~li~~~~--------~~g~~--------~~a~~~~~~m~~~----------~~~ 186 (258)
....+++.|.-++... .|....-...+.+|- -.|+. ..|.+.|+.|..| +..
T Consensus 194 iglk~fe~Al~~~e~~v~~Pa~~vs~~hlEaYkkylLvsLI~~GK~~ql~k~ts~~~~r~~K~ms~pY~ef~~~Y~~~~~ 273 (422)
T KOG2582|consen 194 IGLKRFERALYLLEICVTTPAMAVSHIHLEAYKKYLLVSLILTGKVFQLPKNTSQNAGRFFKPMSNPYHEFLNVYLKDSS 273 (422)
T ss_pred eccccHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhcCceeeccccchhhhHHhcccCCchHHHHHHHHhcCCc
Confidence 4456889999888877 454444444445544 35665 6677888888754 333
Q ss_pred h-HHHHHHH----HHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHH----HHhccCChhHHHHHHHHHHHcC
Q 038429 187 S-WNSMISG----FVEGGFFEKAIELYREMEVENVKPDEVTMVVVLS----ACAKKRDLEFGIWVSSHIEKNG 250 (258)
Q Consensus 187 ~-~~~li~~----~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~----~~~~~g~~~~a~~~~~~m~~~g 250 (258)
+ ..++|.. +.+.++..-|......|.++++.--..||.+|=- ..++.+..++|.+..-+|.+.|
T Consensus 274 ~eLr~lVk~~~~rF~kDnnt~l~k~av~sl~k~nI~rltktF~sLsL~dIA~~vQLa~~qevek~Ilqmie~~ 346 (422)
T KOG2582|consen 274 TELRTLVKKHSERFTKDNNTGLAKQAVSSLYKKNIQRLTKTFLSLSLSDIASRVQLASAQEVEKYILQMIEDG 346 (422)
T ss_pred HHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence 3 6666654 4567888888888888888877777778877643 3345678888888888888766
No 327
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=68.77 E-value=43 Score=24.45 Aligned_cols=188 Identities=11% Similarity=-0.032 Sum_probs=123.5
Q ss_pred hhhhhhhhhhhhccCCCChHHHHHHhccCC-----CCChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHH
Q 038429 55 PYSASKLFTPCALSTFSSLEYARKMFDQIP-----QPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPF 129 (258)
Q Consensus 55 ~~~~~~li~~~~~~~~~~~~~a~~~~~~m~-----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ 129 (258)
...+......+...+ .+..+...+.... ......+......+...++...+...+... ......+ ......
T Consensus 59 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~ 134 (291)
T COG0457 59 AGLLLLLALALLKLG--RLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKA-LALDPDP-DLAEAL 134 (291)
T ss_pred hHHHHHHHHHHHHcc--cHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHH-HcCCCCc-chHHHH
Confidence 456667777777777 7887777776543 345566777777777888888888888877 4332222 122223
Q ss_pred HHH-HhcCcCCcchhhhhhhcc---cC----chhHHHHHHHHHHhcCCHHHHHHHHHhcCCC----ChhhHHHHHHHHHc
Q 038429 130 VIK-AAARPVQFRVGQAIHGMF---ED----DLVISNSLIHFYAVCGDLAMAYCVFVMIGKK----DVVSWNSMISGFVE 197 (258)
Q Consensus 130 ll~-~~~~~~~~~~a~~~~~~~---~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~~~~~li~~~~~ 197 (258)
... .+...|+++.+...+... .+ ....+......+...++.+.+...+...... ....+..+-..+..
T Consensus 135 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 135 LALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence 333 677888888888887776 22 2233444444466778888888888776542 24567777788888
Q ss_pred CCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHhccCChhHHHHHHHHHHH
Q 038429 198 GGFFEKAIELYREMEVENVKPD-EVTMVVVLSACAKKRDLEFGIWVSSHIEK 248 (258)
Q Consensus 198 ~g~~~~a~~~~~~m~~~~~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 248 (258)
.++++.|...+...... .|+ ...+..+...+...|..+.+...+....+
T Consensus 215 ~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 215 LGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred cccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88888888888877664 233 34444445555566778888877776654
No 328
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=68.14 E-value=1.7e+02 Score=31.14 Aligned_cols=152 Identities=10% Similarity=-0.034 Sum_probs=88.9
Q ss_pred cccccchhhHHHHHHHHHhhccCc--chhhhhhhhhhhhccCCCChHHHHHHhc-cCCCCChhhHHHHHHHHhcCCChhh
Q 038429 30 PHFLTNQKQLKRIHAQMLSTDFFF--DPYSASKLFTPCALSTFSSLEYARKMFD-QIPQPNLYTWNTLIRAYSSSDEPIQ 106 (258)
Q Consensus 30 ~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~~~~~~~~a~~~~~-~m~~~~~~~~~~li~~~~~~g~~~~ 106 (258)
--+++.+.+|...++.-.....+. ....|-.+...|+..+ +.+...-+.. ....|+. ..-|.-....|+++.
T Consensus 1393 Sfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~--dpDgV~Gv~~~r~a~~sl---~~qil~~e~~g~~~d 1467 (2382)
T KOG0890|consen 1393 SFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIH--DPDGVEGVSARRFADPSL---YQQILEHEASGNWAD 1467 (2382)
T ss_pred HHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcC--CcchhhhHHHHhhcCccH---HHHHHHHHhhccHHH
Confidence 334556666666555521111110 1112333444777777 7766666655 2333433 245556677899999
Q ss_pred HHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc----cCchhHHHHH-HHHHHhcCCHHHHHHHHHhcC
Q 038429 107 SFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSL-IHFYAVCGDLAMAYCVFVMIG 181 (258)
Q Consensus 107 a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~ 181 (258)
|...|+.+ -+.+ ++...+++-+++.....+.++......+.. .+....+|++ +.+-.+.+++|...+...
T Consensus 1468 a~~Cye~~-~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~--- 1542 (2382)
T KOG0890|consen 1468 AAACYERL-IQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYLS--- 1542 (2382)
T ss_pred HHHHHHHh-hcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhhh---
Confidence 99999988 4332 233667887777777777777777666666 3333344444 555577888888777766
Q ss_pred CCChhhHHHH
Q 038429 182 KKDVVSWNSM 191 (258)
Q Consensus 182 ~~~~~~~~~l 191 (258)
..+..+|...
T Consensus 1543 ~~n~e~w~~~ 1552 (2382)
T KOG0890|consen 1543 DRNIEYWSVE 1552 (2382)
T ss_pred cccccchhHH
Confidence 4455555544
No 329
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=68.05 E-value=60 Score=25.86 Aligned_cols=151 Identities=8% Similarity=0.050 Sum_probs=88.6
Q ss_pred hHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCc-----chhhhhhhc----ccCchhHHHHH
Q 038429 90 TWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQF-----RVGQAIHGM----FEDDLVISNSL 160 (258)
Q Consensus 90 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~-----~~a~~~~~~----~~~~~~~~~~l 160 (258)
-.+.+++.+.+.|....|+.+.+.+ +.. +-=..+.-.++......... ......+.. +.. -..|-.+
T Consensus 84 ~L~~iL~~lL~~~~~~~a~~i~~~y-~~l--~~F~~~LE~LLh~vL~~e~~~~~~~~~~~~~L~~v~~ll~~-f~~~l~I 159 (258)
T PF07064_consen 84 FLHHILRHLLRRNLDEEALEIASKY-RSL--PYFSHALELLLHTVLEEEADSSEDSPIPDALLPRVISLLQE-FPEYLEI 159 (258)
T ss_pred chHHHHHHHHhcCCcHHHHHHHHHh-ccC--CCcHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHc-CcchHHH
Confidence 3566777777777777777777666 321 11123333444433222211 111111111 122 1234455
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHHcC-CCC-----ChhhHHHHHHHHhccC
Q 038429 161 IHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVEN-VKP-----DEVTMVVVLSACAKKR 234 (258)
Q Consensus 161 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p-----~~~t~~~li~~~~~~g 234 (258)
+-.|.|.=+...-..+|+....|- .|+..|.+.|+.+.|-.++--+...+ ... +...-..++......+
T Consensus 160 vv~C~RKtE~~~W~~LF~~lg~P~-----dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~~~ 234 (258)
T PF07064_consen 160 VVNCARKTEVRYWPYLFDYLGSPR-----DLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALESG 234 (258)
T ss_pred HHHHHHhhHHHHHHHHHHhcCCHH-----HHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHhcc
Confidence 555666666666667777664332 57778888999999988776665443 222 3344567788888999
Q ss_pred ChhHHHHHHHHHHHc
Q 038429 235 DLEFGIWVSSHIEKN 249 (258)
Q Consensus 235 ~~~~a~~~~~~m~~~ 249 (258)
+++.|.++.+.+...
T Consensus 235 ~w~Lc~eL~RFL~~l 249 (258)
T PF07064_consen 235 DWDLCFELVRFLKAL 249 (258)
T ss_pred cHHHHHHHHHHHHHh
Confidence 999999999988754
No 330
>PF13934 ELYS: Nuclear pore complex assembly
Probab=67.27 E-value=57 Score=25.34 Aligned_cols=103 Identities=8% Similarity=0.028 Sum_probs=63.7
Q ss_pred hHHHHHHHHhc--CCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcccCchhHH---HHHHHHH
Q 038429 90 TWNTLIRAYSS--SDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVIS---NSLIHFY 164 (258)
Q Consensus 90 ~~~~li~~~~~--~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~li~~~ 164 (258)
.|...+.+|.- ++++++|.+.+ ....+.|+- -..++.++...|+.+.|.+++....|+..+. +.++..
T Consensus 78 ~~~~~~~g~W~LD~~~~~~A~~~L----~~ps~~~~~--~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~- 150 (226)
T PF13934_consen 78 KYIKFIQGFWLLDHGDFEEALELL----SHPSLIPWF--PDKILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVA- 150 (226)
T ss_pred HHHHHHHHHHHhChHhHHHHHHHh----CCCCCCccc--HHHHHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHH-
Confidence 34566666654 45666666655 222233221 2257777777888888888888885555444 333333
Q ss_pred HhcCCHHHHHHHHHhcCCCC-hhhHHHHHHHHHcCC
Q 038429 165 AVCGDLAMAYCVFVMIGKKD-VVSWNSMISGFVEGG 199 (258)
Q Consensus 165 ~~~g~~~~a~~~~~~m~~~~-~~~~~~li~~~~~~g 199 (258)
..+|.+.+|...-+...++. ...+..++..+....
T Consensus 151 La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 151 LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEEC 186 (226)
T ss_pred HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHHh
Confidence 66788999988887766543 456777777766433
No 331
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=66.11 E-value=18 Score=27.51 Aligned_cols=76 Identities=13% Similarity=0.068 Sum_probs=50.3
Q ss_pred hhccCCCChHHHHHHhccCCC----CChhhHHHHHHHHhcCCChhhHHHHHHHhHh--cCCCCCCcchHHHHHHHhcCcC
Q 038429 65 CALSTFSSLEYARKMFDQIPQ----PNLYTWNTLIRAYSSSDEPIQSFMIFLQLVY--NSPYFPNEFTLPFVIKAAARPV 138 (258)
Q Consensus 65 ~~~~~~~~~~~a~~~~~~m~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~p~~~~~~~ll~~~~~~~ 138 (258)
+++.| + +.|.+.|-.+.. .++..-..|...|. ..+.++++.++..... ..+-.+|+..+.+|.+.+-+.+
T Consensus 117 Wsr~~--d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~ 192 (203)
T PF11207_consen 117 WSRFG--D-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLK 192 (203)
T ss_pred hhccC--c-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhc
Confidence 44544 4 456666655543 34444455555555 5678999988877633 2334688889999999999999
Q ss_pred Ccchhh
Q 038429 139 QFRVGQ 144 (258)
Q Consensus 139 ~~~~a~ 144 (258)
+.+.|-
T Consensus 193 ~~e~AY 198 (203)
T PF11207_consen 193 NYEQAY 198 (203)
T ss_pred chhhhh
Confidence 888764
No 332
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=66.02 E-value=71 Score=25.97 Aligned_cols=48 Identities=13% Similarity=0.045 Sum_probs=34.4
Q ss_pred HHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchH-------HHHHHHhcCcCCcc
Q 038429 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL-------PFVIKAAARPVQFR 141 (258)
Q Consensus 93 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~-------~~ll~~~~~~~~~~ 141 (258)
.+.+...+++++++|+..+.+. ...|+..+..+. ..+...|...|+..
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~i-L~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~ 62 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRI-LGKGVSKDEKTLNEQEATVLELFKLYVSKGDYC 62 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHH-hcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcc
Confidence 4566678889999999999999 888888776654 34445555555543
No 333
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=65.58 E-value=9.8 Score=26.77 Aligned_cols=33 Identities=12% Similarity=0.273 Sum_probs=26.3
Q ss_pred hcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHh
Q 038429 99 SSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAA 134 (258)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~ 134 (258)
...|.-.+|..+|..| .+.|-+|| .|+.|+..+
T Consensus 106 R~ygsk~DaY~VF~kM-L~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKM-LERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHH-HhCCCCCc--cHHHHHHHh
Confidence 4456678899999999 89999998 577777654
No 334
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=65.31 E-value=43 Score=23.24 Aligned_cols=57 Identities=4% Similarity=-0.031 Sum_probs=40.6
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChh-hHHHHHHHHhccCChhHHHHHHHH
Q 038429 187 SWNSMISGFVEGGFFEKAIELYREMEVENVKPDEV-TMVVVLSACAKKRDLEFGIWVSSH 245 (258)
Q Consensus 187 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-t~~~li~~~~~~g~~~~a~~~~~~ 245 (258)
-|--+--.|++. ..++.++|..|...|+.-... -|...-..+...|++++|.++++.
T Consensus 67 RylkiWi~ya~~--~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 67 RYLKIWIKYADL--SSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHTT--BSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHH--ccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 333333334443 338999999999998876554 477777788889999999999875
No 335
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=63.95 E-value=1.1e+02 Score=27.25 Aligned_cols=157 Identities=12% Similarity=0.085 Sum_probs=97.9
Q ss_pred CChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc----cCchhHHHHHH
Q 038429 86 PNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLI 161 (258)
Q Consensus 86 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li 161 (258)
.|-...-+++..++++..+.-+.-+..+| ...| -+-..|..++.+|... .-+.-..+|+++ -.|+..-..|.
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~-l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRV-LEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHH-HHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHH
Confidence 34445567888888888888888888888 4443 4556788888888887 444455666644 33444444455
Q ss_pred HHHHhcCCHHHHHHHHHhcCCC------C---hhhHHHHHHHHHcCCChHHHHHHHHHHHHc-CCCCChhhHHHHHHHHh
Q 038429 162 HFYAVCGDLAMAYCVFVMIGKK------D---VVSWNSMISGFVEGGFFEKAIELYREMEVE-NVKPDEVTMVVVLSACA 231 (258)
Q Consensus 162 ~~~~~~g~~~~a~~~~~~m~~~------~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~t~~~li~~~~ 231 (258)
.-|-+ ++.+++...|.....+ + ...|..|++.- ..+.+....+..+.... |...-...+.-+-.-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 54544 7777777777665321 1 12566665432 23455566666665543 44445556666667778
Q ss_pred ccCChhHHHHHHHHHHHc
Q 038429 232 KKRDLEFGIWVSSHIEKN 249 (258)
Q Consensus 232 ~~g~~~~a~~~~~~m~~~ 249 (258)
...++.+|.+++..+.++
T Consensus 217 ~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 217 ENENWTEAIRILKHILEH 234 (711)
T ss_pred cccCHHHHHHHHHHHhhh
Confidence 888888888888755443
No 336
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=62.38 E-value=23 Score=19.82 Aligned_cols=38 Identities=3% Similarity=-0.075 Sum_probs=30.0
Q ss_pred HHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHH
Q 038429 95 IRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKA 133 (258)
Q Consensus 95 i~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~ 133 (258)
+...-+.|-.+++..+++.| ++.|+..+...|..++.-
T Consensus 9 L~~Ak~~GlI~~~~~~l~~l-~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 9 LLLAKRRGLISEVKPLLDRL-QQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHHHHcCChhhHHHHHHHH-HHcCcccCHHHHHHHHHH
Confidence 34445678888999999999 999998888888877654
No 337
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=61.51 E-value=51 Score=27.33 Aligned_cols=69 Identities=12% Similarity=0.100 Sum_probs=51.1
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHc---CCCCChhhH--HHHHHHHhccCChhHHHHHHHHHHH-----cCCccccc
Q 038429 188 WNSMISGFVEGGFFEKAIELYREMEVE---NVKPDEVTM--VVVLSACAKKRDLEFGIWVSSHIEK-----NGIKMDLT 256 (258)
Q Consensus 188 ~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~t~--~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~ 256 (258)
...++...-+.++.++|+++++++.+. --.|+...| ..+.+.+...||..++.+++++..+ .|+.|+++
T Consensus 78 vei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh 156 (380)
T KOG2908|consen 78 VEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVH 156 (380)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhh
Confidence 344555556667899999999998764 223677665 4556667788999999999999887 77777665
No 338
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=61.34 E-value=47 Score=22.26 Aligned_cols=78 Identities=10% Similarity=-0.021 Sum_probs=52.4
Q ss_pred hhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCCCChhhHHHHHHHHhcCCChhhHHHHHHHhH
Q 038429 36 QKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLV 115 (258)
Q Consensus 36 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 115 (258)
-++|..|-+++...+-. ...+--+-+..+.+.| ++++|..+.+...-||...|-+|-. .+.|..++...-+.+|
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG--~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rl- 94 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRG--DYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRL- 94 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccc--hHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHH-
Confidence 46677777777665522 2222223334455666 9999999999998899999877755 5667777777777777
Q ss_pred hcCC
Q 038429 116 YNSP 119 (258)
Q Consensus 116 ~~~~ 119 (258)
...|
T Consensus 95 a~sg 98 (115)
T TIGR02508 95 AASG 98 (115)
T ss_pred HhCC
Confidence 5554
No 339
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=61.26 E-value=15 Score=27.60 Aligned_cols=29 Identities=17% Similarity=0.015 Sum_probs=14.3
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 038429 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMI 180 (258)
Q Consensus 152 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m 180 (258)
|+..+|..++..+...|+.++|.+...++
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44444444455555555555555444444
No 340
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=60.90 E-value=35 Score=29.80 Aligned_cols=88 Identities=10% Similarity=0.055 Sum_probs=57.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCC
Q 038429 159 SLIHFYAVCGDLAMAYCVFVMIGK---KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRD 235 (258)
Q Consensus 159 ~li~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~ 235 (258)
..-..+...|+++.+...+....+ ....+..+++...-+.|+|++|..+-+-|....+. +..............|-
T Consensus 328 l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~ 406 (831)
T PRK15180 328 LRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQL 406 (831)
T ss_pred HHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhH
Confidence 334445677888888887765544 46667788888888888888888888888776654 22222222233344566
Q ss_pred hhHHHHHHHHHH
Q 038429 236 LEFGIWVSSHIE 247 (258)
Q Consensus 236 ~~~a~~~~~~m~ 247 (258)
++++.-.|.++.
T Consensus 407 ~d~~~~~wk~~~ 418 (831)
T PRK15180 407 FDKSYHYWKRVL 418 (831)
T ss_pred HHHHHHHHHHHh
Confidence 777777777664
No 341
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=60.55 E-value=49 Score=25.09 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=14.8
Q ss_pred hHHHHHHHHHcCCChHHHHHHHH
Q 038429 187 SWNSMISGFVEGGFFEKAIELYR 209 (258)
Q Consensus 187 ~~~~li~~~~~~g~~~~a~~~~~ 209 (258)
..|...+.+.+.|.++.|+.+++
T Consensus 183 ivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 183 IVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred hHHHHHHHHHHcCCchHHHHHHh
Confidence 45556666666667776666665
No 342
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=60.48 E-value=61 Score=25.51 Aligned_cols=77 Identities=18% Similarity=0.151 Sum_probs=51.6
Q ss_pred HHHHHHHHhcCCCChh--hHHHHHHHHHcCCChHHHHHHHHHHHH----cCC-CCChhhHHHHHHHHhccCChhHHHHHH
Q 038429 171 AMAYCVFVMIGKKDVV--SWNSMISGFVEGGFFEKAIELYREMEV----ENV-KPDEVTMVVVLSACAKKRDLEFGIWVS 243 (258)
Q Consensus 171 ~~a~~~~~~m~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~-~p~~~t~~~li~~~~~~g~~~~a~~~~ 243 (258)
++|.+-|....+.-.. .---+-.-|.+.|++++|.++|+.+.. +|. .+...+...+..++.+.|+.+....+.
T Consensus 162 ~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 162 EKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4555566555543222 223456778889999999999988843 332 234556777888888899999887776
Q ss_pred HHHH
Q 038429 244 SHIE 247 (258)
Q Consensus 244 ~~m~ 247 (258)
=++.
T Consensus 242 leLl 245 (247)
T PF11817_consen 242 LELL 245 (247)
T ss_pred HHHh
Confidence 6554
No 343
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=60.10 E-value=16 Score=21.75 Aligned_cols=44 Identities=20% Similarity=0.266 Sum_probs=27.0
Q ss_pred HHHHHHHHHhcCC--CChhhHHHHHHHHHcCCChHHHHHHHHHHHH
Q 038429 170 LAMAYCVFVMIGK--KDVVSWNSMISGFVEGGFFEKAIELYREMEV 213 (258)
Q Consensus 170 ~~~a~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 213 (258)
++...++.+.++. .|-.-.-.+|.+|...|++++|.++.+++.+
T Consensus 6 ~~~~~~~~~~lR~~RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 6 LEELEELIDSLRAQRHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444444444433 2434444678888888888888888877754
No 344
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=59.83 E-value=25 Score=30.27 Aligned_cols=56 Identities=18% Similarity=0.233 Sum_probs=32.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHcCCChHHHHHHHHHHHH
Q 038429 158 NSLIHFYAVCGDLAMAYCVFVMIGKK---DVVSWNSMISGFVEGGFFEKAIELYREMEV 213 (258)
Q Consensus 158 ~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 213 (258)
..|+.-|...|++.+|.+..+++.-| ....+.+++-+.-+.|+-...+.++++.-.
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~ 571 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFK 571 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 34566666666666666666666655 334556666666666655545555544433
No 345
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=59.76 E-value=1.4e+02 Score=27.25 Aligned_cols=214 Identities=12% Similarity=0.098 Sum_probs=92.9
Q ss_pred ccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCC-CCChhhHHHHHHHHhcC---CChhhHH
Q 038429 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIP-QPNLYTWNTLIRAYSSS---DEPIQSF 108 (258)
Q Consensus 33 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~-~~~~~~~~~li~~~~~~---g~~~~a~ 108 (258)
+|.++.|.+++-. ..+...+..++...+..|+--+.++... ..++..-. .+...-+..||..|.+. .++.+|+
T Consensus 271 tgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~-~~lls~~~~~~~~ln~arLI~~Y~~~F~~td~~~Al 347 (613)
T PF04097_consen 271 TGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS-APLLSVDPGDPPPLNFARLIGQYTRSFEITDPREAL 347 (613)
T ss_dssp TT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT-------------------------HHHHHHHHHHTTTTT-HHHHH
T ss_pred HhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc-cceeeecCCCCCCcCHHHHHHHHHHHHhccCHHHHH
Confidence 4566666665554 2333445555555555544333111111 11111111 12224577888888764 5788898
Q ss_pred HHHHHhHhcCCCCCCcchHHHHHHH-hcCcCCc---------c--hhhhhhhc------c-cCchhHHHHH---HHHHHh
Q 038429 109 MIFLQLVYNSPYFPNEFTLPFVIKA-AARPVQF---------R--VGQAIHGM------F-EDDLVISNSL---IHFYAV 166 (258)
Q Consensus 109 ~~~~~m~~~~~~~p~~~~~~~ll~~-~~~~~~~---------~--~a~~~~~~------~-~~~~~~~~~l---i~~~~~ 166 (258)
+.|-.+ ....-+.....+...+.- ....+++ + ...-+++. . .++......+ ..-+-.
T Consensus 348 ~Y~~li-~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~~~i~~~~A~~~e~ 426 (613)
T PF04097_consen 348 QYLYLI-CLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLIKFDDDEDFLREIIEQAAREAEE 426 (613)
T ss_dssp HHHHGG-GGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccccCCCCcHHHHHHHHHHHHHHHHH
Confidence 888777 433221112222222221 1111111 1 01112222 1 2233333333 334456
Q ss_pred cCCHHHHHHHHHhcCCCCh--hhHHHHHHHHHcCC-C-----------hHHHHHHHHHHHHcC-----CCC-ChhhHHHH
Q 038429 167 CGDLAMAYCVFVMIGKKDV--VSWNSMISGFVEGG-F-----------FEKAIELYREMEVEN-----VKP-DEVTMVVV 226 (258)
Q Consensus 167 ~g~~~~a~~~~~~m~~~~~--~~~~~li~~~~~~g-~-----------~~~a~~~~~~m~~~~-----~~p-~~~t~~~l 226 (258)
.|++++|..+|....+.|. ...|.++....... . ...|..+.+.....+ +.+ +..|+..|
T Consensus 427 ~g~~~dAi~Ly~La~~~d~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~~~~~~~~~~~~~t~~~L 506 (613)
T PF04097_consen 427 RGRFEDAILLYHLAEEYDKVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNPHISSKVSRKNRETFQLL 506 (613)
T ss_dssp CT-HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSHHHHTTS-HHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCcchHhhccHHHHHHHHHH
Confidence 8999999999998887543 35665555443222 2 334555554443322 222 34567666
Q ss_pred HHH-----HhccCChhHHHHHHHHHHHcCCcc
Q 038429 227 LSA-----CAKKRDLEFGIWVSSHIEKNGIKM 253 (258)
Q Consensus 227 i~~-----~~~~g~~~~a~~~~~~m~~~g~~p 253 (258)
++. +.+.|+++.|.+.++++ ++-|
T Consensus 507 l~L~~ff~~~~~g~~~~AL~~i~~L---~liP 535 (613)
T PF04097_consen 507 LDLAEFFDLYHAGQYEQALDIIEKL---DLIP 535 (613)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHT---T-S-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC---CCCC
Confidence 654 35789999987766654 5555
No 346
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=59.25 E-value=32 Score=23.18 Aligned_cols=40 Identities=13% Similarity=0.249 Sum_probs=29.8
Q ss_pred ChHHHHHHhccCCCCChhhHHHHHHHHhcCCChhhHHHHHHHhHhc
Q 038429 72 SLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYN 117 (258)
Q Consensus 72 ~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 117 (258)
+++++++.+. ...-|..++..|...|..++|++++.+. ..
T Consensus 28 ~~~~~e~~L~-----~~~~~~eL~~lY~~kg~h~~AL~ll~~l-~~ 67 (108)
T PF10366_consen 28 DLEEVEEVLK-----EHGKYQELVDLYQGKGLHRKALELLKKL-AD 67 (108)
T ss_pred CHHHHHHHHH-----HcCCHHHHHHHHHccCccHHHHHHHHHH-hc
Confidence 4555555442 2335889999999999999999999988 44
No 347
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=59.24 E-value=97 Score=25.23 Aligned_cols=132 Identities=14% Similarity=0.042 Sum_probs=72.7
Q ss_pred hhccCCCChHHHHHHhccCCC---CChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcc
Q 038429 65 CALSTFSSLEYARKMFDQIPQ---PNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFR 141 (258)
Q Consensus 65 ~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~ 141 (258)
....+ ++.+|..+|+...+ .+...--.+..+|...|+.+.|..++..+ ...--.........-|..+.+.....
T Consensus 144 ~~~~e--~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~l-P~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 144 LIEAE--DFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAAL-PLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhcc--chhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhC-cccchhhHHHHHHHHHHHHHHHhcCC
Confidence 33445 77777777765543 34455566777777777777777777776 22211111122222344444444444
Q ss_pred hhhhhhhcc---cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----ChhhHHHHHHHHHcCC
Q 038429 142 VGQAIHGMF---EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKK-----DVVSWNSMISGFVEGG 199 (258)
Q Consensus 142 ~a~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~~~~~~li~~~~~~g 199 (258)
+...+.... +.|...--.+-..|...|+.+.|.+.+-.+.+. |...=..|++.+.--|
T Consensus 221 ~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 221 EIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred CHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 444444444 446666667777777777777777666544432 3344445555444444
No 348
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=58.69 E-value=1.1e+02 Score=28.61 Aligned_cols=115 Identities=10% Similarity=0.096 Sum_probs=65.3
Q ss_pred HHHHHHHHhhccCcc---hhhhhhhhhhhhccCCCChHHHHHHhccCCC-CCh----------hhHHHHHHHHhcCCChh
Q 038429 40 KRIHAQMLSTDFFFD---PYSASKLFTPCALSTFSSLEYARKMFDQIPQ-PNL----------YTWNTLIRAYSSSDEPI 105 (258)
Q Consensus 40 ~~~~~~m~~~~~~~~---~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~-~~~----------~~~~~li~~~~~~g~~~ 105 (258)
.+.+..|.++-=.|+ +.+-..++..|-... +++...++.+.++. ||. ..|.-.++--.+.|+-+
T Consensus 183 ~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQ--dY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRa 260 (1226)
T KOG4279|consen 183 NDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQ--DYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRA 260 (1226)
T ss_pred HHHHHHHHhhcCCccccCHHHHHHHHhhhcccc--chHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHH
Confidence 344555555422333 445566666777777 88888888887754 321 23555555556678888
Q ss_pred hHHHHHHHhHhc-CCCCCCcch-----HHH--HHHHhcCcCCcchhhhhhhcc---cCchhH
Q 038429 106 QSFMIFLQLVYN-SPYFPNEFT-----LPF--VIKAAARPVQFRVGQAIHGMF---EDDLVI 156 (258)
Q Consensus 106 ~a~~~~~~m~~~-~~~~p~~~~-----~~~--ll~~~~~~~~~~~a~~~~~~~---~~~~~~ 156 (258)
+|+...-.++++ ..+.||... |-- +-+.|...+..+.|...|+.. +|+.++
T Consensus 261 kAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~s 322 (1226)
T KOG4279|consen 261 KALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYS 322 (1226)
T ss_pred HHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhc
Confidence 888877666443 445677643 211 112234444455566666555 554443
No 349
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.30 E-value=80 Score=24.02 Aligned_cols=121 Identities=11% Similarity=0.013 Sum_probs=54.2
Q ss_pred hhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHH-----HHHHhcCcCCcchhhhhhhcc--cCchhHHHH-
Q 038429 88 LYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPF-----VIKAAARPVQFRVGQAIHGMF--EDDLVISNS- 159 (258)
Q Consensus 88 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~-----ll~~~~~~~~~~~a~~~~~~~--~~~~~~~~~- 159 (258)
+..|..++.... .+.+ +.....+.+ ... +...+|.. +...+...+++++|+.-++.. .|.-..+..
T Consensus 54 S~~Y~~~i~~~~-ak~~-~~~~~~ekf-~~~---n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l 127 (207)
T COG2976 54 SAQYQNAIKAVQ-AKKP-KSIAAAEKF-VQA---NGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKAL 127 (207)
T ss_pred HHHHHHHHHHHh-cCCc-hhHHHHHHH-Hhh---ccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHH
Confidence 445667776664 2333 455555555 222 11223332 233445555555555555533 222222222
Q ss_pred ----HHHHHHhcCCHHHHHHHHHhcCCCChhh--HHHHHHHHHcCCChHHHHHHHHHHHHc
Q 038429 160 ----LIHFYAVCGDLAMAYCVFVMIGKKDVVS--WNSMISGFVEGGFFEKAIELYREMEVE 214 (258)
Q Consensus 160 ----li~~~~~~g~~~~a~~~~~~m~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~ 214 (258)
|-+.....|.+|+|...++....++-.. ...--..+...|+-++|..-|+.-...
T Consensus 128 ~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 128 AALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 2233344555555555555544442221 222223445555555555555554444
No 350
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=57.77 E-value=57 Score=26.55 Aligned_cols=69 Identities=12% Similarity=0.046 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHH-----cCCCCChhhHH
Q 038429 156 ISNSLIHFYAVCGDLAMAYCVFVMIGK--K-DVVSWNSMISGFVEGGFFEKAIELYREMEV-----ENVKPDEVTMV 224 (258)
Q Consensus 156 ~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~t~~ 224 (258)
+.+..-+.|.++|.+.+|.++-+...+ | +...|-.|+..+...|+-..|.+-++++.+ .|+..|...++
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsiee 357 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIEE 357 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHHH
Confidence 344555777788888888888887765 3 556777888888888888888877777743 36665555443
No 351
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=57.74 E-value=23 Score=24.78 Aligned_cols=35 Identities=14% Similarity=0.244 Sum_probs=20.4
Q ss_pred hcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc
Q 038429 116 YNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF 150 (258)
Q Consensus 116 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 150 (258)
-...+.|++.....-+.+|-+.+|+..|.++++.+
T Consensus 76 ~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~i 110 (149)
T KOG4077|consen 76 FDYDLVPSPKVIEAALRACRRVNDFATAVRILEAI 110 (149)
T ss_pred hccccCCChHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 34455666666666666666666555555555555
No 352
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=57.28 E-value=21 Score=21.56 Aligned_cols=51 Identities=14% Similarity=-0.020 Sum_probs=38.4
Q ss_pred CCCChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhc
Q 038429 181 GKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAK 232 (258)
Q Consensus 181 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~ 232 (258)
..|+...++.+++.+++..-.++++.++.+....|. .+..+|.--++.+++
T Consensus 4 v~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 4 VVAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp EE-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 345667788888888888889999999999988875 466777766666665
No 353
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=57.22 E-value=33 Score=23.12 Aligned_cols=41 Identities=10% Similarity=0.118 Sum_probs=18.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC----CChhhHHHHHHHHHcCCC
Q 038429 160 LIHFYAVCGDLAMAYCVFVMIGK----KDVVSWNSMISGFVEGGF 200 (258)
Q Consensus 160 li~~~~~~g~~~~a~~~~~~m~~----~~~~~~~~li~~~~~~g~ 200 (258)
++..+...+..-.|.++++.+++ .+..|.---|+.+...|-
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 34444444454555566655543 133333333444444443
No 354
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.78 E-value=1.4e+02 Score=26.33 Aligned_cols=147 Identities=13% Similarity=0.086 Sum_probs=86.1
Q ss_pred HHhcCCChhhHHHHHHHhHhcC-CCCCCc-------chHHHHHHHh-cCcCCcchhhhhhhcc-----cCch--hHHHHH
Q 038429 97 AYSSSDEPIQSFMIFLQLVYNS-PYFPNE-------FTLPFVIKAA-ARPVQFRVGQAIHGMF-----EDDL--VISNSL 160 (258)
Q Consensus 97 ~~~~~g~~~~a~~~~~~m~~~~-~~~p~~-------~~~~~ll~~~-~~~~~~~~a~~~~~~~-----~~~~--~~~~~l 160 (258)
+-.-.|+..+|++-+.+| ++. .-.|.. .....++..| +..+.++.|+.-|... .-|. ..-..+
T Consensus 332 c~lv~~~~~~al~~i~dm-~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnl 410 (629)
T KOG2300|consen 332 CRLVRGDYVEALEEIVDM-KNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNL 410 (629)
T ss_pred HHHHhCCHHHHHHHHHHH-HHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhH
Confidence 334568999999999999 542 333431 1233444444 3456688887766665 2222 334456
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCChhhHHHH--------HHHH--HcCCChHHHHHHHHHHHHcC-----CCCChhhHHH
Q 038429 161 IHFYAVCGDLAMAYCVFVMIGKKDVVSWNSM--------ISGF--VEGGFFEKAIELYREMEVEN-----VKPDEVTMVV 225 (258)
Q Consensus 161 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~l--------i~~~--~~~g~~~~a~~~~~~m~~~~-----~~p~~~t~~~ 225 (258)
...|.+.|+.+.-.++++....+|..++..- +.++ ...+++.+|...+++-.+.. .+...-....
T Consensus 411 Ai~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvL 490 (629)
T KOG2300|consen 411 AISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVL 490 (629)
T ss_pred HHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHH
Confidence 7788899999999999998887766554421 1222 35688999999888765431 1111111222
Q ss_pred HHHHHhccCChhHHHHHHH
Q 038429 226 VLSACAKKRDLEFGIWVSS 244 (258)
Q Consensus 226 li~~~~~~g~~~~a~~~~~ 244 (258)
|-..+...|+..++...++
T Consensus 491 Ls~v~lslgn~~es~nmvr 509 (629)
T KOG2300|consen 491 LSHVFLSLGNTVESRNMVR 509 (629)
T ss_pred HHHHHHHhcchHHHHhccc
Confidence 2223344566666666555
No 355
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=56.67 E-value=19 Score=16.39 Aligned_cols=25 Identities=16% Similarity=0.375 Sum_probs=12.4
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHH
Q 038429 188 WNSMISGFVEGGFFEKAIELYREME 212 (258)
Q Consensus 188 ~~~li~~~~~~g~~~~a~~~~~~m~ 212 (258)
|..+-..+...|++++|...|+...
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3444444555555555555554443
No 356
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=56.52 E-value=1.1e+02 Score=25.13 Aligned_cols=73 Identities=8% Similarity=0.070 Sum_probs=57.8
Q ss_pred HHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcccCchhHHHHHHHHHHh----------cCCHHHHHHHH
Q 038429 108 FMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAV----------CGDLAMAYCVF 177 (258)
Q Consensus 108 ~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~li~~~~~----------~g~~~~a~~~~ 177 (258)
.++++.+ +..++.|.-.+|..+.-.+...=.+..+..+|+.+-.|..-|..|+..||. .|++....+++
T Consensus 263 ~EL~~~L-~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~rfd~Ll~iCcsmlil~Re~il~~DF~~nmkLL 341 (370)
T KOG4567|consen 263 EELWRHL-EEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQRFDFLLYICCSMLILVRERILEGDFTVNMKLL 341 (370)
T ss_pred HHHHHHH-HhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 5677888 788999999999888888888888999999999995555558888888774 47777777777
Q ss_pred HhcC
Q 038429 178 VMIG 181 (258)
Q Consensus 178 ~~m~ 181 (258)
+.-.
T Consensus 342 Q~yp 345 (370)
T KOG4567|consen 342 QNYP 345 (370)
T ss_pred hcCC
Confidence 6543
No 357
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=56.18 E-value=48 Score=20.76 Aligned_cols=83 Identities=13% Similarity=0.155 Sum_probs=46.1
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChh---hHHHHHHHHhccCChhH
Q 038429 162 HFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEV---TMVVVLSACAKKRDLEF 238 (258)
Q Consensus 162 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~---t~~~li~~~~~~g~~~~ 238 (258)
...++.|+++-...+++.-.+.+. -.+ .+...+..|+. ++++.+.+.|..++.. -++.|..+ +..|+.
T Consensus 2 ~~A~~~~~~~~~~~ll~~~~~~~~-~~~-~l~~A~~~~~~----~~~~~Ll~~g~~~~~~~~~g~t~L~~A-~~~~~~-- 72 (89)
T PF12796_consen 2 HIAAQNGNLEILKFLLEKGADINL-GNT-ALHYAAENGNL----EIVKLLLENGADINSQDKNGNTALHYA-AENGNL-- 72 (89)
T ss_dssp HHHHHTTTHHHHHHHHHTTSTTTS-SSB-HHHHHHHTTTH----HHHHHHHHTTTCTT-BSTTSSBHHHHH-HHTTHH--
T ss_pred HHHHHcCCHHHHHHHHHCcCCCCC-CCC-HHHHHHHcCCH----HHHHHHHHhcccccccCCCCCCHHHHH-HHcCCH--
Confidence 345677888887777773333333 122 44444566664 4445555667666554 34444444 444554
Q ss_pred HHHHHHHHHHcCCcccc
Q 038429 239 GIWVSSHIEKNGIKMDL 255 (258)
Q Consensus 239 a~~~~~~m~~~g~~p~~ 255 (258)
++++.+.+.|..++.
T Consensus 73 --~~~~~Ll~~g~~~~~ 87 (89)
T PF12796_consen 73 --EIVKLLLEHGADVNI 87 (89)
T ss_dssp --HHHHHHHHTTT-TTS
T ss_pred --HHHHHHHHcCCCCCC
Confidence 466777777877764
No 358
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=55.94 E-value=1.1e+02 Score=26.36 Aligned_cols=83 Identities=7% Similarity=-0.152 Sum_probs=47.5
Q ss_pred cccccchhhHHHHHHHHHhh---ccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCCCChh-hHHHHHH--HHhcCCC
Q 038429 30 PHFLTNQKQLKRIHAQMLST---DFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLY-TWNTLIR--AYSSSDE 103 (258)
Q Consensus 30 ~~~~~~~~~a~~~~~~m~~~---~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~li~--~~~~~g~ 103 (258)
.-+.|++..|...+.+.+.. +..++...|-....+..+.| +.++|..--++..+.|.. .+.-+.+ ++...++
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLg--rl~eaisdc~~Al~iD~syikall~ra~c~l~le~ 336 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLG--RLREAISDCNEALKIDSSYIKALLRRANCHLALEK 336 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccC--CchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHH
Confidence 34456777777777777654 33444555666666666666 777777666655554432 2222222 3333456
Q ss_pred hhhHHHHHHHh
Q 038429 104 PIQSFMIFLQL 114 (258)
Q Consensus 104 ~~~a~~~~~~m 114 (258)
|++|.+-|+..
T Consensus 337 ~e~AV~d~~~a 347 (486)
T KOG0550|consen 337 WEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHHHHH
Confidence 67776666654
No 359
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=54.83 E-value=95 Score=26.98 Aligned_cols=70 Identities=14% Similarity=0.126 Sum_probs=37.4
Q ss_pred HHHHHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHc
Q 038429 128 PFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVE 197 (258)
Q Consensus 128 ~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~ 197 (258)
..|+.-|.-.|++.+|..+.+.+ -.....+.+++.+.-+.|+-...+++++..-+....|-|.|-++|.+
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sglIT~nQMtkGf~R 586 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGLITTNQMTKGFER 586 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCceeHHHhhhhhhh
Confidence 34455555555555555555555 12334555555555555555555555555555555555555555543
No 360
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=54.77 E-value=56 Score=21.13 Aligned_cols=62 Identities=15% Similarity=-0.032 Sum_probs=33.3
Q ss_pred HHHHhcCCCChhhHHHHHHHHH---cCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHH
Q 038429 175 CVFVMIGKKDVVSWNSMISGFV---EGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIW 241 (258)
Q Consensus 175 ~~~~~m~~~~~~~~~~li~~~~---~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~ 241 (258)
++++.+.+.++.|.+..=..-+ ..|+.+.|.++++.+. .| ..-|..++.++...|.-+.|.+
T Consensus 23 ~v~d~ll~~~ilT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~LA~e 87 (88)
T cd08819 23 DVCDKCLEQGLLTEEDRNRIEAATENHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHELARE 87 (88)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHhccccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchhhhhc
Confidence 4444444455444442222222 4466777777777766 32 2345666777766666555543
No 361
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=54.66 E-value=62 Score=26.11 Aligned_cols=86 Identities=15% Similarity=0.114 Sum_probs=53.1
Q ss_pred HHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc-----cCchhHHHHHHHHHHh
Q 038429 92 NTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF-----EDDLVISNSLIHFYAV 166 (258)
Q Consensus 92 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~li~~~~~ 166 (258)
-.=|.+++..++|.+++.-.-+- -+..-+......-.-|-.|.+.+.+..+.++-..= .-+..-|.++...|..
T Consensus 87 vvGIQALAEmnrWreVLsWvlqy-Yq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl 165 (309)
T PF07163_consen 87 VVGIQALAEMNRWREVLSWVLQY-YQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLL 165 (309)
T ss_pred hhhHHHHHHHhhHHHHHHHHHHH-hcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHH
Confidence 34477888888888887654333 11111222345566666778888877666554433 2334457777766665
Q ss_pred -----cCCHHHHHHHHH
Q 038429 167 -----CGDLAMAYCVFV 178 (258)
Q Consensus 167 -----~g~~~~a~~~~~ 178 (258)
.|.+++|+++..
T Consensus 166 ~VLlPLG~~~eAeelv~ 182 (309)
T PF07163_consen 166 HVLLPLGHFSEAEELVV 182 (309)
T ss_pred HHHhccccHHHHHHHHh
Confidence 588888888763
No 362
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=54.29 E-value=63 Score=21.56 Aligned_cols=62 Identities=13% Similarity=0.016 Sum_probs=36.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCCh--hhHHHHHHHHHcCCC--hHHHHHHHHHHHHcCCCC
Q 038429 157 SNSLIHFYAVCGDLAMAYCVFVMIGKKDV--VSWNSMISGFVEGGF--FEKAIELYREMEVENVKP 218 (258)
Q Consensus 157 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~p 218 (258)
...++..|...|+.++|...+.++..|+. .....+|..+...++ -+.+..++..+...+..+
T Consensus 5 i~~~l~ey~~~~d~~ea~~~l~el~~~~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~~ 70 (113)
T PF02847_consen 5 IFSILMEYFSSGDVDEAVECLKELKLPSQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLIS 70 (113)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHHTT-GGGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS-
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCC
Confidence 34567788888999999999999877611 233344444444322 334455667777666544
No 363
>PRK11906 transcriptional regulator; Provisional
Probab=53.61 E-value=1.5e+02 Score=25.80 Aligned_cols=89 Identities=9% Similarity=-0.046 Sum_probs=41.6
Q ss_pred CChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCc-chHHHHHHHhcCcCCcchhhhhhhcc---cC---chhHHH
Q 038429 86 PNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNE-FTLPFVIKAAARPVQFRVGQAIHGMF---ED---DLVISN 158 (258)
Q Consensus 86 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~---~~---~~~~~~ 158 (258)
.|..+...+-.+..-.++.+.|...|++. .. +.||. .+|...--.+...|+.++|...++.. .| -.....
T Consensus 336 ~Da~a~~~~g~~~~~~~~~~~a~~~f~rA-~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~ 412 (458)
T PRK11906 336 VDGKILAIMGLITGLSGQAKVSHILFEQA-KI--HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIK 412 (458)
T ss_pred CCHHHHHHHHHHHHhhcchhhHHHHHHHH-hh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHH
Confidence 44555555555555555566666666655 22 22332 22333333334455666666655553 22 122223
Q ss_pred HHHHHHHhcCCHHHHHHHHH
Q 038429 159 SLIHFYAVCGDLAMAYCVFV 178 (258)
Q Consensus 159 ~li~~~~~~g~~~~a~~~~~ 178 (258)
..++.|+..+ .+.|.+++-
T Consensus 413 ~~~~~~~~~~-~~~~~~~~~ 431 (458)
T PRK11906 413 ECVDMYVPNP-LKNNIKLYY 431 (458)
T ss_pred HHHHHHcCCc-hhhhHHHHh
Confidence 3344555443 455665553
No 364
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.64 E-value=1.2e+02 Score=24.21 Aligned_cols=81 Identities=12% Similarity=0.066 Sum_probs=51.9
Q ss_pred HHHHHHHhcCcCCcchhhhhhhcc---------cCch-hHHHHHHHHHHhcCCHHHHHHHHHhcCC-------CChhhHH
Q 038429 127 LPFVIKAAARPVQFRVGQAIHGMF---------EDDL-VISNSLIHFYAVCGDLAMAYCVFVMIGK-------KDVVSWN 189 (258)
Q Consensus 127 ~~~ll~~~~~~~~~~~a~~~~~~~---------~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~-------~~~~~~~ 189 (258)
|..+-+.+++...+++|-..+... -++. ..|-..|-.|.-..++..|++.++..-+ .+..+..
T Consensus 153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~le 232 (308)
T KOG1585|consen 153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLE 232 (308)
T ss_pred HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHH
Confidence 445555666666666655444333 2222 2455666667777899999999987443 2677889
Q ss_pred HHHHHHHcCCChHHHHHHH
Q 038429 190 SMISGFVEGGFFEKAIELY 208 (258)
Q Consensus 190 ~li~~~~~~g~~~~a~~~~ 208 (258)
.||.+|- .|+.+++..+.
T Consensus 233 nLL~ayd-~gD~E~~~kvl 250 (308)
T KOG1585|consen 233 NLLTAYD-EGDIEEIKKVL 250 (308)
T ss_pred HHHHHhc-cCCHHHHHHHH
Confidence 9999875 46777665543
No 365
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=52.16 E-value=25 Score=22.32 Aligned_cols=26 Identities=19% Similarity=0.185 Sum_probs=20.5
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHcC
Q 038429 225 VVLSACAKKRDLEFGIWVSSHIEKNG 250 (258)
Q Consensus 225 ~li~~~~~~g~~~~a~~~~~~m~~~g 250 (258)
++++-+.++.-.++|.++++.|.++|
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 45666777788888899888888877
No 366
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=52.10 E-value=97 Score=26.53 Aligned_cols=58 Identities=17% Similarity=0.080 Sum_probs=31.3
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHc--C----CC-CChhhHHHHHHHHhccCChhHHHHHHHHH
Q 038429 189 NSMISGFVEGGFFEKAIELYREMEVE--N----VK-PDEVTMVVVLSACAKKRDLEFGIWVSSHI 246 (258)
Q Consensus 189 ~~li~~~~~~g~~~~a~~~~~~m~~~--~----~~-p~~~t~~~li~~~~~~g~~~~a~~~~~~m 246 (258)
-.|++.++-.|++..|+++++.+.-. + +. ....||-.+--+|.-.+++.+|.++|..+
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666665544211 1 11 13345556666666666666666666654
No 367
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=52.04 E-value=1.6e+02 Score=26.23 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=22.1
Q ss_pred hhHHHHHHHHhcCCChhhHHHHHHHh
Q 038429 89 YTWNTLIRAYSSSDEPIQSFMIFLQL 114 (258)
Q Consensus 89 ~~~~~li~~~~~~g~~~~a~~~~~~m 114 (258)
.....++.-|.+.+++++|..++..|
T Consensus 409 l~~~eL~~~yl~~~qi~eAi~lL~sm 434 (545)
T PF11768_consen 409 LGLVELISQYLRCDQIEEAINLLLSM 434 (545)
T ss_pred ccHHHHHHHHHhcCCHHHHHHHHHhC
Confidence 34567888999999999999999988
No 368
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=51.92 E-value=90 Score=22.64 Aligned_cols=158 Identities=11% Similarity=-0.063 Sum_probs=66.8
Q ss_pred hhHHHHHHHHhcCCChhhHHHHHHHhHhcC-CCCCCcchHHHHHHHhcCcCCcchhhhhhhcc---cCch-hHHHHHHH-
Q 038429 89 YTWNTLIRAYSSSDEPIQSFMIFLQLVYNS-PYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF---EDDL-VISNSLIH- 162 (258)
Q Consensus 89 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~---~~~~-~~~~~li~- 162 (258)
..+......+...+....+...+... ... ........+......+...++...+...+... .++. ........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKA-LELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHH-HhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence 44455555555555555555555444 211 12222333444444444444444554444444 1111 11222222
Q ss_pred HHHhcCCHHHHHHHHHhcCCCC------hhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCh
Q 038429 163 FYAVCGDLAMAYCVFVMIGKKD------VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDL 236 (258)
Q Consensus 163 ~~~~~g~~~~a~~~~~~m~~~~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~ 236 (258)
.+...|+++.|...|.....-+ ...+......+...++.+++...+.+............+..+-..+...+++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 4555555555555555442211 1112222222334455555555555544431110234444555555555555
Q ss_pred hHHHHHHHHHH
Q 038429 237 EFGIWVSSHIE 247 (258)
Q Consensus 237 ~~a~~~~~~m~ 247 (258)
+.|...+....
T Consensus 219 ~~a~~~~~~~~ 229 (291)
T COG0457 219 EEALEYYEKAL 229 (291)
T ss_pred HHHHHHHHHHH
Confidence 55555555443
No 369
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=51.83 E-value=63 Score=23.08 Aligned_cols=49 Identities=8% Similarity=-0.059 Sum_probs=35.1
Q ss_pred HHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCc
Q 038429 91 WNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQF 140 (258)
Q Consensus 91 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~ 140 (258)
-..++..+.+.+++-.|.++++.+ ++.+...+..|.--.++.+...|-+
T Consensus 23 R~~vl~~L~~~~~~~sAeei~~~l-~~~~p~islaTVYr~L~~l~e~Glv 71 (145)
T COG0735 23 RLAVLELLLEADGHLSAEELYEEL-REEGPGISLATVYRTLKLLEEAGLV 71 (145)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHH-HHhCCCCCHhHHHHHHHHHHHCCCE
Confidence 456777777777778888888888 7777666677766667777666643
No 370
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=51.55 E-value=34 Score=23.07 Aligned_cols=48 Identities=13% Similarity=0.034 Sum_probs=36.8
Q ss_pred HHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcc
Q 038429 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFR 141 (258)
Q Consensus 93 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~ 141 (258)
.++..+...+..-.|.++++.+ ++.+..++..|..-.|+.+...|-+.
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l-~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERL-RKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHH-HhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 4566677777778899999999 77777778778777778887777554
No 371
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=51.49 E-value=12 Score=27.67 Aligned_cols=22 Identities=9% Similarity=0.151 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHcCCcccccCC
Q 038429 237 EFGIWVSSHIEKNGIKMDLTFE 258 (258)
Q Consensus 237 ~~a~~~~~~m~~~g~~p~~~~~ 258 (258)
+.+.+...++++.|+.||++++
T Consensus 51 ~av~~a~~~L~~~Gf~PDvI~~ 72 (171)
T PF12000_consen 51 QAVARAARQLRAQGFVPDVIIA 72 (171)
T ss_pred HHHHHHHHHHHHcCCCCCEEEE
Confidence 3466777788888999998764
No 372
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=51.47 E-value=67 Score=23.62 Aligned_cols=51 Identities=10% Similarity=-0.052 Sum_probs=32.6
Q ss_pred hhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCc
Q 038429 89 YTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQF 140 (258)
Q Consensus 89 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~ 140 (258)
..-..++..+...++.-.|.++++.+ ++.+..++..|..--|+.+.+.|-+
T Consensus 26 ~qR~~IL~~l~~~~~hlSa~eI~~~L-~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 26 PQRLEVLRLMSLQPGAISAYDLLDLL-REAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHH-HhhCCCCCcchHHHHHHHHHHCCCE
Confidence 33345555555556667777778777 6766666766666666666666644
No 373
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=51.35 E-value=27 Score=23.81 Aligned_cols=47 Identities=13% Similarity=0.099 Sum_probs=28.5
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCh
Q 038429 190 SMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDL 236 (258)
Q Consensus 190 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~ 236 (258)
.++..+...+..-.|.++++.|.+.+...+..|.-.-|+.+.+.|-+
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli 58 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLI 58 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeE
Confidence 34555555555667777888877777666776655556666555543
No 374
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=51.22 E-value=1.4e+02 Score=27.54 Aligned_cols=41 Identities=17% Similarity=0.080 Sum_probs=21.6
Q ss_pred HHHHHhcCcCCcchhhhhhhcc-------cCchhHHHHHHHHHHhcCC
Q 038429 129 FVIKAAARPVQFRVGQAIHGMF-------EDDLVISNSLIHFYAVCGD 169 (258)
Q Consensus 129 ~ll~~~~~~~~~~~a~~~~~~~-------~~~~~~~~~li~~~~~~g~ 169 (258)
+|+.+|..+|++-.+.++++.+ +.-...||..|+.+.+.|.
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~s 80 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGS 80 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCC
Confidence 5556666666665555555555 2223345555555555554
No 375
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=49.06 E-value=66 Score=26.00 Aligned_cols=80 Identities=18% Similarity=0.097 Sum_probs=54.3
Q ss_pred HHHHHhcCcCCcchhhhhhhcc-----cCchhHHHHHHHHHHhcCCHHHHHHHHHhc-CCC---ChhhHHHHHHHHHc--
Q 038429 129 FVIKAAARPVQFRVGQAIHGMF-----EDDLVISNSLIHFYAVCGDLAMAYCVFVMI-GKK---DVVSWNSMISGFVE-- 197 (258)
Q Consensus 129 ~ll~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~---~~~~~~~li~~~~~-- 197 (258)
.=|.+++..++|.++....-.. +....+...-|-.|.|.|.+..+.++-..- ..| +...|..+.+.|..
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 3467788888888876553333 223344455566789999999888887643 333 55568887776654
Q ss_pred ---CCChHHHHHHH
Q 038429 198 ---GGFFEKAIELY 208 (258)
Q Consensus 198 ---~g~~~~a~~~~ 208 (258)
.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 68999998776
No 376
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=48.95 E-value=83 Score=21.37 Aligned_cols=79 Identities=11% Similarity=-0.016 Sum_probs=50.6
Q ss_pred chhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCCCChhhHHHHHHHHhcCCChhhHHHHHHHh
Q 038429 35 NQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQL 114 (258)
Q Consensus 35 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 114 (258)
.-++|..|.+++.+.+- ....+--+-+..+.+.| ++++|...=.....||...|-+|-. .+.|.-+++..-+.++
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG--~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rl 95 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRG--DYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRL 95 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT---HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhH--HHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHH
Confidence 35788899999988774 22333334445566777 9999955555556699988866644 6778888888888777
Q ss_pred HhcCC
Q 038429 115 VYNSP 119 (258)
Q Consensus 115 ~~~~~ 119 (258)
...|
T Consensus 96 -a~~g 99 (116)
T PF09477_consen 96 -ASSG 99 (116)
T ss_dssp -CT-S
T ss_pred -HhCC
Confidence 4443
No 377
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=48.94 E-value=1.1e+02 Score=22.59 Aligned_cols=22 Identities=14% Similarity=0.052 Sum_probs=9.6
Q ss_pred hHHHHHHHHHHHHcCCCCChhh
Q 038429 201 FEKAIELYREMEVENVKPDEVT 222 (258)
Q Consensus 201 ~~~a~~~~~~m~~~~~~p~~~t 222 (258)
.-.|.++++.+.+.+..++..|
T Consensus 41 hlSa~eI~~~L~~~~~~is~aT 62 (169)
T PRK11639 41 AISAYDLLDLLREAEPQAKPPT 62 (169)
T ss_pred CCCHHHHHHHHHhhCCCCCcch
Confidence 3344444444444443334443
No 378
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=47.43 E-value=2.1e+02 Score=25.68 Aligned_cols=172 Identities=8% Similarity=0.005 Sum_probs=88.8
Q ss_pred HHHHHHhccCCC-CChhhHHHHHHH-----HhcCCChhhHHHHHHHhHhc-------CCCCCCcchHHHHHHHhcCcC--
Q 038429 74 EYARKMFDQIPQ-PNLYTWNTLIRA-----YSSSDEPIQSFMIFLQLVYN-------SPYFPNEFTLPFVIKAAARPV-- 138 (258)
Q Consensus 74 ~~a~~~~~~m~~-~~~~~~~~li~~-----~~~~g~~~~a~~~~~~m~~~-------~~~~p~~~~~~~ll~~~~~~~-- 138 (258)
..+...++.... .++..-..+... ++...+++.|+..|+.. .. .+ ......-+-.+|.+..
T Consensus 229 ~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~a-a~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 229 SEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLA-AESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHH-HHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 455666655433 333333332222 34556788888888877 43 34 3334555555555543
Q ss_pred ---Ccchhhhhhhcc----cCchhHHHHHHHHHHh-cCCHHHHHHHHHhcCCC--ChhhHH-HHHHHHH--cCCChHHHH
Q 038429 139 ---QFRVGQAIHGMF----EDDLVISNSLIHFYAV-CGDLAMAYCVFVMIGKK--DVVSWN-SMISGFV--EGGFFEKAI 205 (258)
Q Consensus 139 ---~~~~a~~~~~~~----~~~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~--~~~~~~-~li~~~~--~~g~~~~a~ 205 (258)
+.+.|..++... .|+....-..+..... ..+...|.+.|...-+. ....|. +++.... ...+.+.|.
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~ 384 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAF 384 (552)
T ss_pred ccccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHH
Confidence 344566666666 3444333333333333 24567888888765543 222222 2222222 234577788
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHcCC
Q 038429 206 ELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGI 251 (258)
Q Consensus 206 ~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 251 (258)
.++++..+.| .|-..--...+..+.. ++.+.+...+..+...|.
T Consensus 385 ~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 385 AYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred HHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 8888877777 3333323333334444 666666666666655543
No 379
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.93 E-value=1.6e+02 Score=26.77 Aligned_cols=131 Identities=13% Similarity=0.032 Sum_probs=74.8
Q ss_pred hhhhhhhhhhccCCCChHHHHHHhccCCCCChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcC
Q 038429 57 SASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAAR 136 (258)
Q Consensus 57 ~~~~li~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~ 136 (258)
.-+.+++.+.+.| -.++|+.+- +|. +.-.....+.|+++.|.++..+. -+..-|..|-++...
T Consensus 616 ~rt~va~Fle~~g--~~e~AL~~s-----~D~---d~rFelal~lgrl~iA~~la~e~-------~s~~Kw~~Lg~~al~ 678 (794)
T KOG0276|consen 616 IRTKVAHFLESQG--MKEQALELS-----TDP---DQRFELALKLGRLDIAFDLAVEA-------NSEVKWRQLGDAALS 678 (794)
T ss_pred hhhhHHhHhhhcc--chHhhhhcC-----CCh---hhhhhhhhhcCcHHHHHHHHHhh-------cchHHHHHHHHHHhh
Confidence 3455555555555 555555441 111 11223345566777776665544 244568888888888
Q ss_pred cCCcchhhhhhhcccCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHcCCChHHHHHHHHH
Q 038429 137 PVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210 (258)
Q Consensus 137 ~~~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 210 (258)
.+++..|.+.+... .-|..|+-.+...|+.+....+-...++. ...|...-+|...|+++++.+++.+
T Consensus 679 ~~~l~lA~EC~~~a----~d~~~LlLl~t~~g~~~~l~~la~~~~~~--g~~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 679 AGELPLASECFLRA----RDLGSLLLLYTSSGNAEGLAVLASLAKKQ--GKNNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred cccchhHHHHHHhh----cchhhhhhhhhhcCChhHHHHHHHHHHhh--cccchHHHHHHHcCCHHHHHHHHHh
Confidence 88888887777654 23556666666677766555554443322 1123333445566778777777644
No 380
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.32 E-value=1.5e+02 Score=23.51 Aligned_cols=139 Identities=12% Similarity=0.102 Sum_probs=69.3
Q ss_pred ChHHHHHHhccCCC---------CChhhHHHHHHHHhcCCChhhHHHHHHHhHhc-CCCCCCc--chHHHHHHHhcCcCC
Q 038429 72 SLEYARKMFDQIPQ---------PNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYN-SPYFPNE--FTLPFVIKAAARPVQ 139 (258)
Q Consensus 72 ~~~~a~~~~~~m~~---------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~p~~--~~~~~ll~~~~~~~~ 139 (258)
.+++|-++|.+... .--.+|......+.+.|.-++|-.-|-++-+- +.+.|.. .....-|..|.+.|+
T Consensus 29 k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~~~~eAv~cL~~aieIyt~~Gr 108 (288)
T KOG1586|consen 29 KYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKVDPEEAVNCLEKAIEIYTDMGR 108 (288)
T ss_pred chHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHhhhH
Confidence 67777777765431 12234445555555566555554444444111 1122222 223444666777787
Q ss_pred cchhhhhhhcc----cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHH---HHcCCChHHHHHHHHHHH
Q 038429 140 FRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISG---FVEGGFFEKAIELYREME 212 (258)
Q Consensus 140 ~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~---~~~~g~~~~a~~~~~~m~ 212 (258)
+..|-..+-.+ +.+..-+..-|..|-..+++=+..+ .+...=.++++. -+..+++.+|+++|++..
T Consensus 109 f~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ee-------s~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva 181 (288)
T KOG1586|consen 109 FTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEE-------SVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVA 181 (288)
T ss_pred HHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchh-------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77765554444 4454444444444433333211111 122222233322 244577889999999887
Q ss_pred HcCCC
Q 038429 213 VENVK 217 (258)
Q Consensus 213 ~~~~~ 217 (258)
...+.
T Consensus 182 ~~s~~ 186 (288)
T KOG1586|consen 182 RSSLD 186 (288)
T ss_pred HHhcc
Confidence 65443
No 381
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=45.03 E-value=1.4e+02 Score=22.76 Aligned_cols=88 Identities=17% Similarity=0.187 Sum_probs=46.3
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC------CChhhHHHHHH-HHHcCCC--hHHHHHHHHHHHHcCCCCChh----hHHHH
Q 038429 160 LIHFYAVCGDLAMAYCVFVMIGK------KDVVSWNSMIS-GFVEGGF--FEKAIELYREMEVENVKPDEV----TMVVV 226 (258)
Q Consensus 160 li~~~~~~g~~~~a~~~~~~m~~------~~~~~~~~li~-~~~~~g~--~~~a~~~~~~m~~~~~~p~~~----t~~~l 226 (258)
..-.....|++++|.+-++.+.+ .-...|..+.. +++..+. +-+|..++.-....+ .|+.. .+...
T Consensus 35 ~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~~-~ps~~EL~V~~~~Y 113 (204)
T COG2178 35 EAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDGR-LPSPEELGVPPIAY 113 (204)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcCC-CCCHHHcCCCHHHH
Confidence 33334455666666666655542 23345555554 5565554 345555555544432 23221 11112
Q ss_pred HHH--------------HhccCChhHHHHHHHHHHH
Q 038429 227 LSA--------------CAKKRDLEFGIWVSSHIEK 248 (258)
Q Consensus 227 i~~--------------~~~~g~~~~a~~~~~~m~~ 248 (258)
|.+ ..+.|+++.|.+.++-|.+
T Consensus 114 ilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 114 ILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 222 2467999999999988863
No 382
>PHA03100 ankyrin repeat protein; Provisional
Probab=44.98 E-value=2.1e+02 Score=24.83 Aligned_cols=139 Identities=10% Similarity=0.007 Sum_probs=63.9
Q ss_pred ccccchhhHHHHHHHHHhhccCcchhh--hhhhhhh-----hhccCCCChHHHHHHhccCCC---CChhhHHHHHHHHh-
Q 038429 31 HFLTNQKQLKRIHAQMLSTDFFFDPYS--ASKLFTP-----CALSTFSSLEYARKMFDQIPQ---PNLYTWNTLIRAYS- 99 (258)
Q Consensus 31 ~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~li~~-----~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~- 99 (258)
.+.++.+- .+.+.+.|..++... ....+.. ....+ +.+-+..+++.... .+....+.+..+..
T Consensus 43 ~~~~~~~i----vk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~--~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~ 116 (480)
T PHA03100 43 KEARNIDV----VKILLDNGADINSSTKNNSTPLHYLSNIKYNLTD--VKEIVKLLLEYGANVNAPDNNGITPLLYAISK 116 (480)
T ss_pred hccCCHHH----HHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhc--hHHHHHHHHHCCCCCCCCCCCCCchhhHHHhc
Confidence 34455443 344445566655432 2234444 55556 77766666665443 22223333433332
Q ss_pred cCCChhhHHHHHHHhHhcCCCCCCcch--HHHHHHHhcCcC--Ccchhhhhhhcc-c---CchhHHHHHHHHHHhcCCHH
Q 038429 100 SSDEPIQSFMIFLQLVYNSPYFPNEFT--LPFVIKAAARPV--QFRVGQAIHGMF-E---DDLVISNSLIHFYAVCGDLA 171 (258)
Q Consensus 100 ~~g~~~~a~~~~~~m~~~~~~~p~~~~--~~~ll~~~~~~~--~~~~a~~~~~~~-~---~~~~~~~~li~~~~~~g~~~ 171 (258)
..|+.+- ++.+ .+.|..++... -...+..++..| +.+.+..+++.- . .+. .-.+-++..++.|+.+
T Consensus 117 ~~~~~~i----v~~L-l~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~-~g~tpL~~A~~~~~~~ 190 (480)
T PHA03100 117 KSNSYSI----VEYL-LDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNR-YGYTPLHIAVEKGNID 190 (480)
T ss_pred ccChHHH----HHHH-HHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccC-CCCCHHHHHHHhCCHH
Confidence 4454333 3333 33444433221 123444445555 555555444443 1 122 2233455566667766
Q ss_pred HHHHHHHhcC
Q 038429 172 MAYCVFVMIG 181 (258)
Q Consensus 172 ~a~~~~~~m~ 181 (258)
-+.-+++.-.
T Consensus 191 iv~~Ll~~ga 200 (480)
T PHA03100 191 VIKFLLDNGA 200 (480)
T ss_pred HHHHHHHcCC
Confidence 6666665433
No 383
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=44.47 E-value=2.4e+02 Score=25.53 Aligned_cols=185 Identities=13% Similarity=0.038 Sum_probs=87.3
Q ss_pred hhhhhhhhhhhccCCCChHHHHHHhccCCCC--ChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHH
Q 038429 56 YSASKLFTPCALSTFSSLEYARKMFDQIPQP--NLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKA 133 (258)
Q Consensus 56 ~~~~~li~~~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~ 133 (258)
..+..|+..+... +.++-..+++++... ....++.+++++...|-...+.-+.+.+ ....+.+.. .-..+...
T Consensus 347 ~~f~~Lv~~lr~l---~~~~L~~l~~~~~~~~~~~~~r~~~lDal~~aGT~~av~~i~~~I-~~~~~~~~e-a~~~l~~l 421 (618)
T PF01347_consen 347 SKFSRLVRLLRTL---SYEDLEELYKQLKSKSKKEQARKIFLDALPQAGTNPAVKFIKDLI-KSKKLTDDE-AAQLLASL 421 (618)
T ss_dssp HHHHHHHHHHTTS----HHHHHHHHHHHTTS---HHHHHHHHHHHHHH-SHHHHHHHHHHH-HTT-S-HHH-HHHHHHHH
T ss_pred HHHHHHHHHHhcC---CHHHHHHHHHHHHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHH-HcCCCCHHH-HHHHHHHH
Confidence 3578888877766 788888888887765 6788999999999999855444444444 554443332 22223222
Q ss_pred hcC--cCCcchhhhhhhcc-----cCc-------hhHHHHHHHHHHhcCC------------HHHHHHHHHhc-----CC
Q 038429 134 AAR--PVQFRVGQAIHGMF-----EDD-------LVISNSLIHFYAVCGD------------LAMAYCVFVMI-----GK 182 (258)
Q Consensus 134 ~~~--~~~~~~a~~~~~~~-----~~~-------~~~~~~li~~~~~~g~------------~~~a~~~~~~m-----~~ 182 (258)
... .-..+....+++.+ ..+ ..++..+++-+|...+ .++..+.+... ..
T Consensus 422 ~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 501 (618)
T PF01347_consen 422 PFHVRRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSR 501 (618)
T ss_dssp HHT-----HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHT
T ss_pred HhhcCCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhc
Confidence 222 22333333333333 222 2356666777776631 11111111110 11
Q ss_pred CChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHh--ccCChhHHHHHHHHH
Q 038429 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA--KKRDLEFGIWVSSHI 246 (258)
Q Consensus 183 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~--~~g~~~~a~~~~~~m 246 (258)
.|...--..|.+++..|... +...+..........+...-...|.++. ..-..+++..++-.+
T Consensus 502 ~~~~~~~~~LkaLgN~g~~~-~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v~~~l~~I 566 (618)
T PF01347_consen 502 GDEEEKIVYLKALGNLGHPE-SIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKVREILLPI 566 (618)
T ss_dssp T-HHHHHHHHHHHHHHT-GG-GHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHHHHHHHHH
T ss_pred cCHHHHHHHHHHhhccCCch-hhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHHHHHHHHH
Confidence 23344445566666666543 3333333222222233344445555655 333444555554444
No 384
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=44.33 E-value=1.1e+02 Score=26.83 Aligned_cols=112 Identities=12% Similarity=0.004 Sum_probs=64.0
Q ss_pred hcCCChhhHHH-HHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhcCCHHHH
Q 038429 99 SSSDEPIQSFM-IFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMA 173 (258)
Q Consensus 99 ~~~g~~~~a~~-~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a 173 (258)
...|++..|.+ ++..+ +...--|+..-..+.| +.+.|+++.+.+..... .....+-.++++...+.|+++.|
T Consensus 300 ~~~gd~~aas~~~~~~l-r~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 300 LADGDIIAASQQLFAAL-RNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hhccCHHHHHHHHHHHH-HhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHH
Confidence 34455555543 44444 4444445544333333 44567777777776666 45556777788888888888888
Q ss_pred HHHHHhcCCC---ChhhHHHHHHHHHcCCChHHHHHHHHHHHH
Q 038429 174 YCVFVMIGKK---DVVSWNSMISGFVEGGFFEKAIELYREMEV 213 (258)
Q Consensus 174 ~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 213 (258)
...-..|... +...........-..|-++++...|++...
T Consensus 377 ~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~ 419 (831)
T PRK15180 377 LSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLL 419 (831)
T ss_pred HHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhc
Confidence 8887776542 222222222222334556777777776643
No 385
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.62 E-value=1.4e+02 Score=22.46 Aligned_cols=125 Identities=14% Similarity=0.002 Sum_probs=81.0
Q ss_pred chHHHHHHHhcCcCCcchhhhhhhcc-cCchhHHHHHHH-----HHHhcCCHHHHHHHHHhcCCC--ChhhHH---HHH-
Q 038429 125 FTLPFVIKAAARPVQFRVGQAIHGMF-EDDLVISNSLIH-----FYAVCGDLAMAYCVFVMIGKK--DVVSWN---SMI- 192 (258)
Q Consensus 125 ~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~~~li~-----~~~~~g~~~~a~~~~~~m~~~--~~~~~~---~li- 192 (258)
.+|..-++. +..+..++|..-|..+ ...-..|-.|-. .....|+...|...|++.-.. -+.... -|=
T Consensus 60 d~flaAL~l-A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlra 138 (221)
T COG4649 60 DAFLAALKL-AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRA 138 (221)
T ss_pred HHHHHHHHH-HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHH
Confidence 445444443 4456678888888888 444445554432 345679999999999998652 222221 111
Q ss_pred -HHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHcC
Q 038429 193 -SGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250 (258)
Q Consensus 193 -~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 250 (258)
..+..+|.+++...-.+-+...+-+.-...-..|--+-.+.|++.+|...|..+....
T Consensus 139 a~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da 197 (221)
T COG4649 139 AYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDA 197 (221)
T ss_pred HHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccc
Confidence 2346788888888777766555433333345667777789999999999999987543
No 386
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=43.04 E-value=37 Score=23.14 Aligned_cols=26 Identities=23% Similarity=0.213 Sum_probs=20.2
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHcC
Q 038429 225 VVLSACAKKRDLEFGIWVSSHIEKNG 250 (258)
Q Consensus 225 ~li~~~~~~g~~~~a~~~~~~m~~~g 250 (258)
++|+-+.++...++|+++++.|.++|
T Consensus 66 tViD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 45666677788888888888888877
No 387
>PRK09857 putative transposase; Provisional
Probab=42.47 E-value=1.6e+02 Score=23.90 Aligned_cols=66 Identities=3% Similarity=0.116 Sum_probs=47.3
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHcCCccc
Q 038429 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254 (258)
Q Consensus 188 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 254 (258)
+..++.-....++.++..++++.+.+. .........++..-+.+.|.-+++.++...|...|+.++
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 445555445667777777888777665 334445566777777888888888899999999998765
No 388
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=42.40 E-value=1.8e+02 Score=23.51 Aligned_cols=177 Identities=12% Similarity=0.062 Sum_probs=92.7
Q ss_pred hhhccCCCChHHHHHHhccC-C-CCChhhHHHHHHHHhcCC-----ChhhHH--------HHHHHhHhcCCCCCC--cch
Q 038429 64 PCALSTFSSLEYARKMFDQI-P-QPNLYTWNTLIRAYSSSD-----EPIQSF--------MIFLQLVYNSPYFPN--EFT 126 (258)
Q Consensus 64 ~~~~~~~~~~~~a~~~~~~m-~-~~~~~~~~~li~~~~~~g-----~~~~a~--------~~~~~m~~~~~~~p~--~~~ 126 (258)
++++.|.-+++.+..++..+ . +.+...|..++..+.... ..+... +++....++-|..++ ...
T Consensus 47 al~~~g~~~~~~~l~l~~~~~~~E~~~~vw~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~ 126 (324)
T PF11838_consen 47 ALARAGRLSYSDFLDLLEYLLPNETDYVVWSTALSNLSSLRNRLYAEDEELQEAFRKFVRRLLEPLYERLGWDPRPGEDH 126 (324)
T ss_dssp HHHHTTSS-HHHHHHHHGGG-GT--SHHHHHHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHHHH--SSSS--SCH
T ss_pred HHHHcCCCCHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCCCcccccH
Confidence 34455544677888888877 3 467677777666554322 111111 223333244455554 222
Q ss_pred -----HHHHHHHhcCcCC---cchhhhhhhcc--c--C-----chhHHHHHHHHHHhcCCHHHHHHHHHhcCC-CChhhH
Q 038429 127 -----LPFVIKAAARPVQ---FRVGQAIHGMF--E--D-----DLVISNSLIHFYAVCGDLAMAYCVFVMIGK-KDVVSW 188 (258)
Q Consensus 127 -----~~~ll~~~~~~~~---~~~a~~~~~~~--~--~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~~~ 188 (258)
-..++...| |+ .+.+.+.|+.. . + +......++....+.|..+.-..+++.... ++...-
T Consensus 127 ~~~~lr~~~~~~a~--~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k 204 (324)
T PF11838_consen 127 NDRLLRALLLSLAC--GDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEK 204 (324)
T ss_dssp HHHHHHHHHHHHHH--T-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHH
T ss_pred HHHHHHHHHHHHhc--cchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHH
Confidence 223344444 44 34455555554 1 1 344556667777778887766666666655 466777
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHcC-CCCChhhHHHHHHHHhccCCh--hHHHHHHH
Q 038429 189 NSMISGFVEGGFFEKAIELYREMEVEN-VKPDEVTMVVVLSACAKKRDL--EFGIWVSS 244 (258)
Q Consensus 189 ~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~t~~~li~~~~~~g~~--~~a~~~~~ 244 (258)
..++.+++...+.+...++++.....+ +++ .. ...++.++...+.. +.+.+.+.
T Consensus 205 ~~~l~aLa~~~d~~~~~~~l~~~l~~~~v~~-~d-~~~~~~~~~~~~~~~~~~~~~~~~ 261 (324)
T PF11838_consen 205 RRLLSALACSPDPELLKRLLDLLLSNDKVRS-QD-IRYVLAGLASSNPVGRDLAWEFFK 261 (324)
T ss_dssp HHHHHHHTT-S-HHHHHHHHHHHHCTSTS-T-TT-HHHHHHHHH-CSTTCHHHHHHHHH
T ss_pred HHHHHhhhccCCHHHHHHHHHHHcCCccccc-HH-HHHHHHHHhcCChhhHHHHHHHHH
Confidence 889999998888888888888887754 443 33 34444455433333 55555554
No 389
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=42.28 E-value=47 Score=27.70 Aligned_cols=48 Identities=10% Similarity=0.044 Sum_probs=35.3
Q ss_pred HHHHhcCCChhhHHHHHHHhHhcCCCCC-CcchHHHHHHHhcCcCCcchhhh
Q 038429 95 IRAYSSSDEPIQSFMIFLQLVYNSPYFP-NEFTLPFVIKAAARPVQFRVGQA 145 (258)
Q Consensus 95 i~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~ 145 (258)
-+-|.+.|.+++|+..|..- . .+.| |.+++..-..+|.+...+..|+.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~-i--a~~P~NpV~~~NRA~AYlk~K~FA~AE~ 152 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTA-I--AVYPHNPVYHINRALAYLKQKSFAQAEE 152 (536)
T ss_pred hhhhhhccchhHHHHHhhhh-h--ccCCCCccchhhHHHHHHHHHHHHHHHH
Confidence 34677888899999888654 1 3445 77888888888888887776654
No 390
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=41.78 E-value=1.9e+02 Score=23.45 Aligned_cols=138 Identities=10% Similarity=0.052 Sum_probs=80.2
Q ss_pred HHHHHHHHhcCCC---hhhHHHHHHHhHhcC-CC---CCCcchHHHHHHHhcCcCCcchhhhhhhcc--cCchhHHHHHH
Q 038429 91 WNTLIRAYSSSDE---PIQSFMIFLQLVYNS-PY---FPNEFTLPFVIKAAARPVQFRVGQAIHGMF--EDDLVISNSLI 161 (258)
Q Consensus 91 ~~~li~~~~~~g~---~~~a~~~~~~m~~~~-~~---~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~--~~~~~~~~~li 161 (258)
-..++...| |+ .+.|.+.|+.. ... .- ..++..-..++....+.|+.+.-..+++.. .++......++
T Consensus 132 r~~~~~~a~--~~~~~~~~a~~~~~~~-~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l 208 (324)
T PF11838_consen 132 RALLLSLAC--GDPECVAEARELFKAW-LDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLL 208 (324)
T ss_dssp HHHHHHHHH--T-HHHHHHHHHHHHHH-HHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHH
T ss_pred HHHHHHHhc--cchhHHHHHHHHHHHH-hcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHH
Confidence 333455555 44 56778888887 443 22 445556677888888888877777777777 56777889999
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCC---hhhHHHHHHHHHcCCCh--HHHHHHHH----HHHHcCCCCChhhHHHHHHHHhc
Q 038429 162 HFYAVCGDLAMAYCVFVMIGKKD---VVSWNSMISGFVEGGFF--EKAIELYR----EMEVENVKPDEVTMVVVLSACAK 232 (258)
Q Consensus 162 ~~~~~~g~~~~a~~~~~~m~~~~---~~~~~~li~~~~~~g~~--~~a~~~~~----~m~~~~~~p~~~t~~~li~~~~~ 232 (258)
.+.+...+.+...++++....++ ......++.++...+.. +.+...+. .+.+. +.++..+...++..+..
T Consensus 209 ~aLa~~~d~~~~~~~l~~~l~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~~-~~~~~~~~~~~~~~~~~ 287 (324)
T PF11838_consen 209 SALACSPDPELLKRLLDLLLSNDKVRSQDIRYVLAGLASSNPVGRDLAWEFFKENWDAIIKK-FGTNSSALSRVIKSFAG 287 (324)
T ss_dssp HHHTT-S-HHHHHHHHHHHHCTSTS-TTTHHHHHHHHH-CSTTCHHHHHHHHHHCHHHHHCH-C-TTSHCCHHHHHCCCT
T ss_pred HhhhccCCHHHHHHHHHHHcCCcccccHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHH-hcCCChHHHHHHHHHhc
Confidence 99999999888888887665532 22345555566533433 55555443 33322 33333355666665444
No 391
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=41.68 E-value=1.1e+02 Score=20.49 Aligned_cols=60 Identities=17% Similarity=0.112 Sum_probs=37.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCC--hhhHHHHHHHHHcCC--ChHHHHHHHHHHHHcCC
Q 038429 157 SNSLIHFYAVCGDLAMAYCVFVMIGKKD--VVSWNSMISGFVEGG--FFEKAIELYREMEVENV 216 (258)
Q Consensus 157 ~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~ 216 (258)
...++..|...|+.++|.+-+.++..|+ ......+|..+...+ .-+.+..++..+.+.+.
T Consensus 5 i~~~l~ey~~~~D~~ea~~~l~~L~~~~~~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~~ 68 (113)
T smart00544 5 IFLIIEEYLSSGDTDEAVHCLLELKLPEQHHEVVKVLLTCALEEKRTYREMYSVLLSRLCQANV 68 (113)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcCC
Confidence 3456778888889999998888887662 123334444444443 23445566677766654
No 392
>PHA02878 ankyrin repeat protein; Provisional
Probab=41.07 E-value=2.4e+02 Score=24.54 Aligned_cols=114 Identities=9% Similarity=0.023 Sum_probs=51.3
Q ss_pred HHHHhcCcCCcchhhhhhhcc-c---CchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHcCCChH
Q 038429 130 VIKAAARPVQFRVGQAIHGMF-E---DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKK---DVVSWNSMISGFVEGGFFE 202 (258)
Q Consensus 130 ll~~~~~~~~~~~a~~~~~~~-~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~g~~~ 202 (258)
.+...+..|+.+.+..+++.- . +|..- .+.+...++.|+.+-+.-+++.-..+ |..-.+.|..+....++.+
T Consensus 171 pLh~A~~~~~~~iv~~Ll~~gad~n~~d~~g-~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~~ 249 (477)
T PHA02878 171 ALHYATENKDQRLTELLLSYGANVNIPDKTN-NSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYD 249 (477)
T ss_pred HHHHHHhCCCHHHHHHHHHCCCCCCCcCCCC-CCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhcCCHH
Confidence 444455566666555555443 1 12211 23344555667766655555443322 3334445544444434433
Q ss_pred HHHHHHHHHHHcCCCCChhh----HHHHHHHHhccCChhHHHHHHHHHHHcCCcccc
Q 038429 203 KAIELYREMEVENVKPDEVT----MVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255 (258)
Q Consensus 203 ~a~~~~~~m~~~~~~p~~~t----~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 255 (258)
+.+.+.+.|..++... ++.|..+ .+. .++++.+.+.|..|+.
T Consensus 250 ----iv~~Ll~~gadvn~~~~~~g~TpLh~A---~~~----~~~v~~Ll~~gadin~ 295 (477)
T PHA02878 250 ----ILKLLLEHGVDVNAKSYILGLTALHSS---IKS----ERKLKLLLEYGADINS 295 (477)
T ss_pred ----HHHHHHHcCCCCCccCCCCCCCHHHHH---ccC----HHHHHHHHHCCCCCCC
Confidence 3333445555444322 2333333 122 2344555556655553
No 393
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.04 E-value=1.7e+02 Score=23.16 Aligned_cols=21 Identities=10% Similarity=0.189 Sum_probs=16.6
Q ss_pred hccCChhHHHHHHHHHHHcCC
Q 038429 231 AKKRDLEFGIWVSSHIEKNGI 251 (258)
Q Consensus 231 ~~~g~~~~a~~~~~~m~~~g~ 251 (258)
+..+++.+|..+|+++.++.+
T Consensus 165 a~leqY~~Ai~iyeqva~~s~ 185 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSL 185 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 456889999999999876543
No 394
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=40.91 E-value=83 Score=26.93 Aligned_cols=94 Identities=11% Similarity=0.003 Sum_probs=56.9
Q ss_pred ChhhHHHHHHHHhcCCChhhHHHHHHHhH------hcCCCCC-----CcchHHHHHHHhcCcCCcchhhhhhhcc-----
Q 038429 87 NLYTWNTLIRAYSSSDEPIQSFMIFLQLV------YNSPYFP-----NEFTLPFVIKAAARPVQFRVGQAIHGMF----- 150 (258)
Q Consensus 87 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~------~~~~~~p-----~~~~~~~ll~~~~~~~~~~~a~~~~~~~----- 150 (258)
+..+--.++.++.+..++.+.++..+.-. ...|..| .=.+...|++..+-.||+..|.++++.+
T Consensus 74 ~~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~~ 153 (404)
T PF10255_consen 74 NVYSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLNKK 153 (404)
T ss_pred cHHHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccCcccc
Confidence 33334445566666666666555444320 0011111 1123456777888888888888887777
Q ss_pred -------cCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 038429 151 -------EDDLVISNSLIHFYAVCGDLAMAYCVFVMI 180 (258)
Q Consensus 151 -------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 180 (258)
...+.++.-+-=+|.-.+++.+|.++|...
T Consensus 154 ~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 154 GLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred hhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234456666667777888999999988754
No 395
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=40.87 E-value=71 Score=24.05 Aligned_cols=20 Identities=15% Similarity=0.144 Sum_probs=10.7
Q ss_pred HHHHHhcCCHHHHHHHHHhc
Q 038429 161 IHFYAVCGDLAMAYCVFVMI 180 (258)
Q Consensus 161 i~~~~~~g~~~~a~~~~~~m 180 (258)
+-.|.+.|.+++|.++++..
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~ 137 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRL 137 (200)
T ss_pred HHHHHhcCchHHHHHHHHHH
Confidence 34455555666666555543
No 396
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=40.35 E-value=79 Score=22.57 Aligned_cols=20 Identities=35% Similarity=0.375 Sum_probs=8.4
Q ss_pred HcCCChHHHHHHHHHHHHcC
Q 038429 196 VEGGFFEKAIELYREMEVEN 215 (258)
Q Consensus 196 ~~~g~~~~a~~~~~~m~~~~ 215 (258)
...++.-.|.++++++.+.+
T Consensus 31 ~~~~~~~sAeei~~~l~~~~ 50 (145)
T COG0735 31 LEADGHLSAEELYEELREEG 50 (145)
T ss_pred HhcCCCCCHHHHHHHHHHhC
Confidence 33333344444444444443
No 397
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=40.31 E-value=3.3e+02 Score=25.89 Aligned_cols=112 Identities=9% Similarity=-0.016 Sum_probs=50.3
Q ss_pred hcCCChhhHHHHHHHhHhcCCCCCCcchH--HHHHHHhcCcCCcchhhhhhhcc-cCchh--HHHHHHHHHHhcCCHHHH
Q 038429 99 SSSDEPIQSFMIFLQLVYNSPYFPNEFTL--PFVIKAAARPVQFRVGQAIHGMF-EDDLV--ISNSLIHFYAVCGDLAMA 173 (258)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~--~~ll~~~~~~~~~~~a~~~~~~~-~~~~~--~~~~li~~~~~~g~~~~a 173 (258)
+..|+.+- ++.+ .+.|..||.... .+.+...+..|+.+.+.-+++.- .++.. .-++-+...+..|+.+-+
T Consensus 533 a~~g~~~~----l~~L-l~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~g~~~iv 607 (823)
T PLN03192 533 ASTGNAAL----LEEL-LKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIF 607 (823)
T ss_pred HHcCCHHH----HHHH-HHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHhCCHHHH
Confidence 44566433 3334 344555554321 23444455566666555555533 11111 112233444455665555
Q ss_pred HHHHHhcCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC
Q 038429 174 YCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPD 219 (258)
Q Consensus 174 ~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 219 (258)
.-++..-...+...-...+...+..|+.+-+..++ +.|..+|
T Consensus 608 ~~L~~~~~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll----~~Gadin 649 (823)
T PLN03192 608 RILYHFASISDPHAAGDLLCTAAKRNDLTAMKELL----KQGLNVD 649 (823)
T ss_pred HHHHhcCcccCcccCchHHHHHHHhCCHHHHHHHH----HCCCCCC
Confidence 54443222222222234455566667765544443 4454443
No 398
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=40.10 E-value=33 Score=21.84 Aligned_cols=48 Identities=13% Similarity=0.122 Sum_probs=31.8
Q ss_pred ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhcc
Q 038429 184 DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKK 233 (258)
Q Consensus 184 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~ 233 (258)
+......+++.+.. ++++++...+.++...|+.+ ......+.+...+.
T Consensus 4 ~~~~i~~i~~~~~~-~~~~~~~~~~~~l~~~G~s~-~~Il~~l~~~l~~~ 51 (89)
T PF08542_consen 4 PPEVIEEILESCLN-GDFKEARKKLYELLVEGYSA-SDILKQLHEVLVES 51 (89)
T ss_dssp -HHHHHHHHHHHHH-TCHHHHHHHHHHHHHTT--H-HHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHh-CCHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHh
Confidence 34445566666544 59999999999999888754 45566666666665
No 399
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=39.71 E-value=1.4e+02 Score=25.29 Aligned_cols=16 Identities=13% Similarity=-0.128 Sum_probs=8.3
Q ss_pred hcCCHHHHHHHHHhcC
Q 038429 166 VCGDLAMAYCVFVMIG 181 (258)
Q Consensus 166 ~~g~~~~a~~~~~~m~ 181 (258)
+.+++..|.++|..+.
T Consensus 143 n~~~y~aA~~~l~~l~ 158 (379)
T PF09670_consen 143 NRYDYGAAARILEELL 158 (379)
T ss_pred hcCCHHHHHHHHHHHH
Confidence 4555555555555443
No 400
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.85 E-value=2.8e+02 Score=24.55 Aligned_cols=36 Identities=14% Similarity=0.189 Sum_probs=22.9
Q ss_pred ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC
Q 038429 184 DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPD 219 (258)
Q Consensus 184 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 219 (258)
+...+..++++....+....|+.++++|.+.|..|.
T Consensus 247 ~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~ 282 (484)
T PRK14956 247 GIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIY 282 (484)
T ss_pred CHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHH
Confidence 444455566655555555677777788777776554
No 401
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=38.57 E-value=1.1e+02 Score=26.66 Aligned_cols=110 Identities=10% Similarity=-0.013 Sum_probs=61.8
Q ss_pred CcccccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC---CChhhHHHHHHHHhcCCChh
Q 038429 29 HPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ---PNLYTWNTLIRAYSSSDEPI 105 (258)
Q Consensus 29 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~ 105 (258)
+.+-+|.++-++.+.+.- ..+..++.|-+.=+++.|-.| +++-..-+++.--. +|..--+.|+-++.+ |..+
T Consensus 90 aAsaAGHl~vVk~L~~~g--a~VN~tT~TNStPLraACfDG--~leivKyLvE~gad~~IanrhGhTcLmIa~yk-Gh~~ 164 (615)
T KOG0508|consen 90 AASAAGHLEVVKLLLRRG--ASVNDTTRTNSTPLRAACFDG--HLEIVKYLVEHGADPEIANRHGHTCLMIACYK-GHVD 164 (615)
T ss_pred HHhccCcHHHHHHHHHhc--CccccccccCCccHHHHHhcc--hhHHHHHHHHcCCCCcccccCCCeeEEeeecc-CchH
Confidence 445566666665554433 333444555556677777777 88888888765543 333333334433332 3333
Q ss_pred hHHHHHHHhHhcCCCCCCcchH--HHHHHHhcCcCCcchhhhhhh
Q 038429 106 QSFMIFLQLVYNSPYFPNEFTL--PFVIKAAARPVQFRVGQAIHG 148 (258)
Q Consensus 106 ~a~~~~~~m~~~~~~~p~~~~~--~~ll~~~~~~~~~~~a~~~~~ 148 (258)
=| +.+ .+.|..++..++ |+.++-|+.+|.++-...++.
T Consensus 165 I~----qyL-le~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~ 204 (615)
T KOG0508|consen 165 IA----QYL-LEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLK 204 (615)
T ss_pred HH----HHH-HHhCCCcchhcccCchHHHhhhhcccHHHHHHHHh
Confidence 33 233 444556665555 577777777777776655554
No 402
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=36.64 E-value=3.7e+02 Score=25.29 Aligned_cols=47 Identities=13% Similarity=0.107 Sum_probs=30.7
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCC
Q 038429 188 WNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRD 235 (258)
Q Consensus 188 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~ 235 (258)
...++++ ++.++.+.|+.++.+|.+.|..|....-..++-+.-..|.
T Consensus 262 Isa~~ks-irgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~asEdigl 308 (725)
T PRK13341 262 ISAFIKS-LRGSDPDAALYWLARMVEAGEDPRFIFRRMLIAASEDVGL 308 (725)
T ss_pred HHHHHHH-HhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCC
Confidence 3344443 4557899999999999998887755554444444444453
No 403
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=36.51 E-value=34 Score=23.32 Aligned_cols=49 Identities=12% Similarity=0.003 Sum_probs=36.6
Q ss_pred HHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcc
Q 038429 92 NTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFR 141 (258)
Q Consensus 92 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~ 141 (258)
..++..+...+.+-.|.++++.+ ++.+...+..|.---|+.+.+.|-+.
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l-~~~~~~is~~TVYR~L~~L~e~Gli~ 59 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKL-RKKGPRISLATVYRTLDLLEEAGLIR 59 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHH-HHTTTT--HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHcCCCCCCHHHHHHHh-hhccCCcCHHHHHHHHHHHHHCCeEE
Confidence 45677777777788999999999 88888888887777777777777544
No 404
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=36.25 E-value=2.2e+02 Score=22.64 Aligned_cols=82 Identities=11% Similarity=0.031 Sum_probs=43.8
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHh
Q 038429 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231 (258)
Q Consensus 152 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~ 231 (258)
-|......+-..|.+.|++.+|+..|-.-..++...+-.++.-....|...++ |...-.. +--|.
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~Ra-VL~yL 152 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA--------------DLFIARA-VLQYL 152 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H--------------HHHHHHH-HHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch--------------hHHHHHH-HHHHH
Confidence 35566777888888899999888888665555444443333322222222222 2222223 33344
Q ss_pred ccCChhHHHHHHHHHHH
Q 038429 232 KKRDLEFGIWVSSHIEK 248 (258)
Q Consensus 232 ~~g~~~~a~~~~~~m~~ 248 (258)
-.|++..|...++...+
T Consensus 153 ~l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 153 CLGNLRDANELFDTFTS 169 (260)
T ss_dssp HTTBHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHH
Confidence 45778888877776654
No 405
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=36.23 E-value=1.4e+02 Score=22.57 Aligned_cols=63 Identities=22% Similarity=0.318 Sum_probs=42.1
Q ss_pred HHHHHHHHHhcCCC-Ch-----hhH-----HHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCC
Q 038429 170 LAMAYCVFVMIGKK-DV-----VSW-----NSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRD 235 (258)
Q Consensus 170 ~~~a~~~~~~m~~~-~~-----~~~-----~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~ 235 (258)
.+.|..+|+.+.+. +. ... -..+-.|.+.|.+++|.+++++... .|+..+...-+....+..+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~~Kd 158 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIREKD 158 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHHccc
Confidence 77888888776641 11 122 2344577888999999998888776 4777777666666655544
No 406
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=35.67 E-value=1.5e+02 Score=20.62 Aligned_cols=43 Identities=7% Similarity=-0.067 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHcCCCCChhh-HHHHHHHHhccCChhHHHHHHH
Q 038429 202 EKAIELYREMEVENVKPDEVT-MVVVLSACAKKRDLEFGIWVSS 244 (258)
Q Consensus 202 ~~a~~~~~~m~~~~~~p~~~t-~~~li~~~~~~g~~~~a~~~~~ 244 (258)
++..++|..|...||.-.... |...-..+-..|++.+|.++++
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 457788999999988766544 5666666778899999999886
No 407
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=35.38 E-value=2.9e+02 Score=24.78 Aligned_cols=57 Identities=9% Similarity=0.100 Sum_probs=31.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCC--Ch---hhHHHHHHHHHcCCChHHHHHHHHHHHH
Q 038429 157 SNSLIHFYAVCGDLAMAYCVFVMIGKK--DV---VSWNSMISGFVEGGFFEKAIELYREMEV 213 (258)
Q Consensus 157 ~~~li~~~~~~g~~~~a~~~~~~m~~~--~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~ 213 (258)
...++.-|.+.+.+++|..++..|.=. .. .+.+.+...+.+..--.+.+..++.+..
T Consensus 411 ~~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 411 LVELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 445677788888888888888777521 12 2333334444444434444444444443
No 408
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=34.94 E-value=50 Score=20.38 Aligned_cols=40 Identities=18% Similarity=0.245 Sum_probs=29.2
Q ss_pred HcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCC
Q 038429 196 VEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRD 235 (258)
Q Consensus 196 ~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~ 235 (258)
...|+.+.+.+++++..+.|+.|.......+..+..+.|+
T Consensus 12 l~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG~ 51 (79)
T PF02607_consen 12 LLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIGE 51 (79)
T ss_dssp HHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999988888877766667666655443
No 409
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=34.17 E-value=71 Score=21.28 Aligned_cols=62 Identities=18% Similarity=0.267 Sum_probs=33.8
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhcc--CChhHHHHHHHHHHHcCCc
Q 038429 189 NSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKK--RDLEFGIWVSSHIEKNGIK 252 (258)
Q Consensus 189 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~--g~~~~a~~~~~~m~~~g~~ 252 (258)
..+|..|...|+.++|..-++++..... .......++..+... ..-+....++..+.+.|.-
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~~~--~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~ 69 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLPSQ--HHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLI 69 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-GGG--HHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCCcc--HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCC
Confidence 4566778888999999888877533211 112233444444443 2233455666666666543
No 410
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=33.74 E-value=1.3e+02 Score=19.22 Aligned_cols=60 Identities=13% Similarity=0.148 Sum_probs=33.2
Q ss_pred HHHhcCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHH
Q 038429 176 VFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239 (258)
Q Consensus 176 ~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a 239 (258)
++..+.+.++.|-...=.--+..-+.+.+..+++.+...| ...|..+.+++...|....|
T Consensus 21 v~~~L~~~~Vlt~~~~e~I~~~~tr~~q~~~LLd~L~~RG----~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 21 LWDHLLSRGVFTPDMIEEIQAAGSRRDQARQLLIDLETRG----KQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHhcCCCCHHHHHHHHcCCCHHHHHHHHHHHHHhcC----HHHHHHHHHHHHhcCchHHH
Confidence 4444444455554444444444455666777776666654 45566666666666655444
No 411
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=32.82 E-value=39 Score=21.44 Aligned_cols=18 Identities=11% Similarity=0.143 Sum_probs=8.1
Q ss_pred HHHHHHHHHHcCCccccc
Q 038429 239 GIWVSSHIEKNGIKMDLT 256 (258)
Q Consensus 239 a~~~~~~m~~~g~~p~~~ 256 (258)
..+..++++..|++||+.
T Consensus 14 ie~~inELk~dG~ePDiv 31 (85)
T PF08967_consen 14 IEEKINELKEDGFEPDIV 31 (85)
T ss_dssp HHHHHHHHHHTT----EE
T ss_pred HHHHHHHHHhcCCCCCEE
Confidence 344455666777777764
No 412
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=32.71 E-value=46 Score=28.52 Aligned_cols=20 Identities=15% Similarity=0.034 Sum_probs=12.2
Q ss_pred HHhcCCHHHHHHHHHhcCCC
Q 038429 164 YAVCGDLAMAYCVFVMIGKK 183 (258)
Q Consensus 164 ~~~~g~~~~a~~~~~~m~~~ 183 (258)
+|+.|+......+|+...+.
T Consensus 27 Lck~gdcraGv~ff~aA~qv 46 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQV 46 (639)
T ss_pred HHhccchhhhHHHHHHHHHh
Confidence 55666666666666655543
No 413
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Probab=32.54 E-value=1.4e+02 Score=22.16 Aligned_cols=47 Identities=17% Similarity=0.259 Sum_probs=39.5
Q ss_pred HHHHHHHHH-cCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHcCC
Q 038429 205 IELYREMEV-ENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGI 251 (258)
Q Consensus 205 ~~~~~~m~~-~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 251 (258)
-++++.+.. .|+.|....+..++..+++.-.++.+.++++.+...|.
T Consensus 151 p~l~~~l~~~~~i~~~~~~~~W~~~lF~~~~~~~~~~riwD~~l~eG~ 198 (199)
T smart00164 151 PDLYKHLKDKLGIDPSLYALRWFLTLFARELPLEIVLRIWDVLFAEGS 198 (199)
T ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Confidence 356667775 78989999999999999998899999999999887773
No 414
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=32.54 E-value=1.4e+02 Score=19.24 Aligned_cols=15 Identities=7% Similarity=-0.066 Sum_probs=7.2
Q ss_pred ccCChhHHHHHHHHH
Q 038429 232 KKRDLEFGIWVSSHI 246 (258)
Q Consensus 232 ~~g~~~~a~~~~~~m 246 (258)
..|+.++|...+++.
T Consensus 53 ~~G~~~~A~~~l~eA 67 (94)
T PF12862_consen 53 RFGHYEEALQALEEA 67 (94)
T ss_pred HhCCHHHHHHHHHHH
Confidence 345555555544443
No 415
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=32.40 E-value=3.6e+02 Score=23.98 Aligned_cols=38 Identities=8% Similarity=0.052 Sum_probs=25.7
Q ss_pred CCCChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC
Q 038429 181 GKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPD 219 (258)
Q Consensus 181 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 219 (258)
..+.......++.++ ..++..+|+.+++++...|..|.
T Consensus 238 ~~~~~~~if~Li~al-~~~d~~~Al~~l~~Ll~~G~~~~ 275 (504)
T PRK14963 238 GLPPQERLRGIAAAL-AQGDAAEALSGAAQLYRDGFAAR 275 (504)
T ss_pred CCCcHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCHH
Confidence 334455555666665 44788888888888888876553
No 416
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=32.38 E-value=2.7e+02 Score=22.58 Aligned_cols=89 Identities=10% Similarity=-0.010 Sum_probs=40.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC---------CChhhHHHHHHHHHcCCChHHHHHHHHH----HHHc-CCCCChhhHH
Q 038429 159 SLIHFYAVCGDLAMAYCVFVMIGK---------KDVVSWNSMISGFVEGGFFEKAIELYRE----MEVE-NVKPDEVTMV 224 (258)
Q Consensus 159 ~li~~~~~~g~~~~a~~~~~~m~~---------~~~~~~~~li~~~~~~g~~~~a~~~~~~----m~~~-~~~p~~~t~~ 224 (258)
.+|..+.+.|++++..+.+.++.. -...+.|+++.-.....+.+--.++++. ++.. +-+....|-.
T Consensus 70 QmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNt 149 (440)
T KOG1464|consen 70 QMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNT 149 (440)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccc
Confidence 445555566666665555555431 1334455555444444444333333322 1111 2222333444
Q ss_pred HHHHHHhccCChhHHHHHHHHHH
Q 038429 225 VVLSACAKKRDLEFGIWVSSHIE 247 (258)
Q Consensus 225 ~li~~~~~~g~~~~a~~~~~~m~ 247 (258)
-|-+.|...|++.+...++.++.
T Consensus 150 KLgkl~fd~~e~~kl~KIlkqLh 172 (440)
T KOG1464|consen 150 KLGKLYFDRGEYTKLQKILKQLH 172 (440)
T ss_pred hHhhhheeHHHHHHHHHHHHHHH
Confidence 45555555555555555555554
No 417
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=32.34 E-value=1.8e+02 Score=23.54 Aligned_cols=26 Identities=0% Similarity=-0.064 Sum_probs=16.5
Q ss_pred hhHHHHHHHHhcCCChhhHHHHHHHh
Q 038429 89 YTWNTLIRAYSSSDEPIQSFMIFLQL 114 (258)
Q Consensus 89 ~~~~~li~~~~~~g~~~~a~~~~~~m 114 (258)
..-...+..+...|++.+|++++.+.
T Consensus 128 ~~~~~~l~~ll~~~dy~~Al~li~~~ 153 (291)
T PF10475_consen 128 QQTQSRLQELLEEGDYPGALDLIEEC 153 (291)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 33445566666677777777777665
No 418
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=31.78 E-value=1.1e+02 Score=21.88 Aligned_cols=59 Identities=14% Similarity=0.078 Sum_probs=41.9
Q ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 038429 171 AMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230 (258)
Q Consensus 171 ~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~ 230 (258)
..|.++-..+.-+-.-|...++.+. +.|-+.+...++++|.+.|++.+...|+-+++-.
T Consensus 96 r~aR~~A~~lgL~V~GtlGvL~~ak-~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~~~ 154 (157)
T COG2405 96 RDARNVAKSLGLKVTGTLGVLALAK-SKGLISKDKPILDELIEKGFRISRSILEEILRKL 154 (157)
T ss_pred HHHHHHHHHcCCeeeehhHHHHHHH-HcCcccchHHHHHHHHHhcCcccHHHHHHHHHHh
Confidence 3455555555555556666666654 4467788889999999999999999888777644
No 419
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=31.44 E-value=1.9e+02 Score=20.40 Aligned_cols=27 Identities=11% Similarity=0.203 Sum_probs=14.8
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHcCC
Q 038429 190 SMISGFVEGGFFEKAIELYREMEVENV 216 (258)
Q Consensus 190 ~li~~~~~~g~~~~a~~~~~~m~~~~~ 216 (258)
.++-.+...|+++.|+.+.+...+.|.
T Consensus 53 ~~mvW~~D~Gd~~~AL~~a~yAi~~~l 79 (132)
T PF05944_consen 53 TVMVWLFDVGDFDGALDIAEYAIEHGL 79 (132)
T ss_pred hhHhhhhcccCHHHHHHHHHHHHHcCC
Confidence 334445555566666666655555554
No 420
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=31.38 E-value=1.3e+02 Score=26.82 Aligned_cols=68 Identities=15% Similarity=0.110 Sum_probs=47.0
Q ss_pred ChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc-cCchhHHHHHH
Q 038429 87 NLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF-EDDLVISNSLI 161 (258)
Q Consensus 87 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~~~li 161 (258)
++..|..++.-|..+++|++|+++..-. . ....|.++.....+..+...++..+..+ +.|-+.|-.=|
T Consensus 572 sV~py~~iL~e~~sssKWeqavRLCrfv-~------eqTMWAtlAa~Av~~~~m~~~EiAYaA~~~idKVsyin~i 640 (737)
T KOG1524|consen 572 SVNPYPEILHEYLSSSKWEQAVRLCRFV-Q------EQTMWATLAAVAVRKHQMQISEIAYAAALQIDKVSYINHI 640 (737)
T ss_pred eccccHHHHHHHhccchHHHHHHHHHhc-c------chHHHHHHHHHHHhhccccHHHHHHHHhhchhhHHHHHHH
Confidence 4556899999999999999999998766 2 3346777777777777776666655555 44444443333
No 421
>PRK11905 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed
Probab=31.21 E-value=3.9e+02 Score=26.88 Aligned_cols=135 Identities=16% Similarity=0.169 Sum_probs=66.5
Q ss_pred HHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcccCchhHHHHHHHHHHhc---
Q 038429 91 WNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVC--- 167 (258)
Q Consensus 91 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~li~~~~~~--- 167 (258)
...++.-|.-+.+---|+..+-+. . =-.||..|-..||.==...++|..=..-=..+-.+..||..++.+-.-.
T Consensus 68 ~~~~~~e~~l~~~eg~~lm~laea-l--lr~pd~~t~d~li~dk~~~~~w~~h~~~~~~~~vna~~w~l~~~~~~~~~~~ 144 (1208)
T PRK11905 68 VEALLQEYSLSSQEGVALMCLAEA-L--LRIPDTATRDALIRDKIAPGDWKSHLGGSKSLFVNAATWGLMLTGKLLSTVN 144 (1208)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHH-h--hcCCChHHHHHHHHHHhccCChhhhcCCCCcceeeHHHHHHHHhceecCccc
Confidence 444555554444333333333322 1 1246666666666666666665321111111134566776666554331
Q ss_pred -CCHHHHH-HHHHhcCCCChh-----hHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHh
Q 038429 168 -GDLAMAY-CVFVMIGKKDVV-----SWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231 (258)
Q Consensus 168 -g~~~~a~-~~~~~m~~~~~~-----~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~ 231 (258)
+.+..++ ++.+++.+|-+. ....|-+-|+.....++|.+..+++.+.|+. .+++.+..+-.
T Consensus 145 ~~~~~~~~~~~~~~~~~p~i~~~~~~am~~~~~qFv~Geti~eal~~~~~l~~~G~~---~s~D~LGE~~~ 212 (1208)
T PRK11905 145 DRGLSAALTRLIARLGEPVIRKAVDMAMRMMGEQFVTGETIEEALKRARELEARGYR---YSYDMLGEAAR 212 (1208)
T ss_pred cCCHHHHHHHHHHhccHHHHHHHHHHHHHHHhCeeccCCCHHHHHHHHHHHHhCCCE---EEEEeccCCcC
Confidence 2222222 244444444221 2234445556666778888888888777774 55555555443
No 422
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=30.87 E-value=83 Score=27.23 Aligned_cols=28 Identities=7% Similarity=-0.111 Sum_probs=20.4
Q ss_pred HHHHHHhhccCcchhhhhhhhhhhhccC
Q 038429 42 IHAQMLSTDFFFDPYSASKLFTPCALST 69 (258)
Q Consensus 42 ~~~~m~~~~~~~~~~~~~~li~~~~~~~ 69 (258)
.--.|+..++.|+..-+-.-+-.|+-.|
T Consensus 29 A~lrML~NNLdpeVAe~P~~LVvYGg~G 56 (561)
T COG2987 29 AALRMLMNNLDPEVAEYPEELVVYGGIG 56 (561)
T ss_pred HHHHHHHhCCChhhhcChhheEEecccc
Confidence 3345777888888887777777777666
No 423
>cd08790 DED_DEDD Death Effector Domain of DEDD. Death Effector Domain (DED) found in DEDD. DEDD has been shown to block mitotic progression by inhibiting Cdk1 and to be involved in regulating the insulin signaling cascade. DEDD can bind to itself, to DEDD2, and to the two tandem DED-containing caspases, caspase-8 and -10. In general, DEDs comprise a subfamily of the Death Domain (DD) superfamily. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and CARD (Caspase activation and recruitment domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=30.69 E-value=64 Score=21.27 Aligned_cols=58 Identities=16% Similarity=0.114 Sum_probs=38.2
Q ss_pred HcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHcCCcccc
Q 038429 196 VEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255 (258)
Q Consensus 196 ~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 255 (258)
.+..++..|..+|.++.+.|. ++...+..+..-+...++.+.- .++..=++.-+.|+.
T Consensus 35 ~~~e~i~s~~~Lf~~Lee~gl-l~e~~~~fL~ELLy~I~R~DLL-~~L~~~ke~~~~~~~ 92 (97)
T cd08790 35 YERGLIRSGRDFLLALERQGR-CDETNFRQVLQLLRIITRHDLL-PYVTLKRRRAVCPDL 92 (97)
T ss_pred hhccCcCcHHHHHHHHHHcCC-CccchHHHHHHHHHHHHHHHHH-HHhccCCcCCCCCch
Confidence 445678889999999998885 4444555677777777777655 444444445555554
No 424
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=30.64 E-value=1.4e+02 Score=18.64 Aligned_cols=31 Identities=13% Similarity=0.231 Sum_probs=18.5
Q ss_pred ChHHHHHHhccCCC---CChhhHHHHHHHHhcCC
Q 038429 72 SLEYARKMFDQIPQ---PNLYTWNTLIRAYSSSD 102 (258)
Q Consensus 72 ~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g 102 (258)
+.+.|..++..+.. +++..||++-+.+.+++
T Consensus 12 DtEmA~~mL~DLr~dekRsPQLYnAI~k~L~RHk 45 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDEKRSPQLYNAIGKLLDRHK 45 (82)
T ss_pred HHHHHHHHHHHhcchhhcChHHHHHHHHHHHHcc
Confidence 44556666655542 56666777766666553
No 425
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=30.08 E-value=1.3e+02 Score=17.95 Aligned_cols=14 Identities=36% Similarity=0.460 Sum_probs=6.3
Q ss_pred CCChHHHHHHHHHH
Q 038429 198 GGFFEKAIELYREM 211 (258)
Q Consensus 198 ~g~~~~a~~~~~~m 211 (258)
.|++-+|-++++++
T Consensus 12 ~g~f~EaHEvlE~~ 25 (62)
T PF03745_consen 12 AGDFFEAHEVLEEL 25 (62)
T ss_dssp TT-HHHHHHHHHHH
T ss_pred CCCHHHhHHHHHHH
Confidence 44455555555443
No 426
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=29.93 E-value=3.9e+02 Score=23.56 Aligned_cols=48 Identities=4% Similarity=0.012 Sum_probs=29.7
Q ss_pred hhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccC
Q 038429 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKR 234 (258)
Q Consensus 186 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g 234 (258)
.....++++. +.++.++|..++.+|...|..|....-..+..++-..|
T Consensus 245 ~~i~~li~si-~~~d~~~Al~~l~~ll~~Gedp~~i~r~l~~~~~edi~ 292 (472)
T PRK14962 245 EVVRDYINAI-FNGDVKRVFTVLDDVYYSGKDYEVLIQQAIEDLVEDLE 292 (472)
T ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcc
Confidence 3444555553 55888999999999988887765544333333333333
No 427
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=29.61 E-value=58 Score=19.54 Aligned_cols=24 Identities=13% Similarity=0.092 Sum_probs=15.3
Q ss_pred CCChhhHHHHHHHhHhcCCCCCCc
Q 038429 101 SDEPIQSFMIFLQLVYNSPYFPNE 124 (258)
Q Consensus 101 ~g~~~~a~~~~~~m~~~~~~~p~~ 124 (258)
.-+++.|+..|.++..+..++|+.
T Consensus 38 ~Wd~~~Al~~F~~lk~~~~IP~eA 61 (63)
T smart00804 38 NWDYERALKNFTELKSEGSIPPEA 61 (63)
T ss_pred CCCHHHHHHHHHHHHhcCCCChhh
Confidence 346788888888883334555543
No 428
>TIGR01914 cas_Csa4 CRISPR-associated protein, Csa4 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein that tends to be found near CRISPR repeats. The species range for this species, so far, is exclusively archaeal. It is found so far in only four different species, and includes two tandem genes in Pyrococcus furiosus DSM 3638. This subfamily is found in a CRISPR/Cas locus we designate APERN, so the family is designated Csa4, for CRISPR/Cas Subtype Protein 4.
Probab=29.61 E-value=3.1e+02 Score=22.84 Aligned_cols=73 Identities=15% Similarity=0.110 Sum_probs=49.0
Q ss_pred HHHHHHH--HhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHh
Q 038429 158 NSLIHFY--AVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231 (258)
Q Consensus 158 ~~li~~~--~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~ 231 (258)
+.||+.. .|..++-...++.+.+.+.+...-..|+.+..- |+-+.-...++.++..|++++..-.+.|...++
T Consensus 278 ~~LmdfI~~lK~r~~y~~~kfvd~L~r~d~e~~~~L~~ai~~-~~~~~~Ysa~R~~k~~g~~~~~~~v~~lae~l~ 352 (354)
T TIGR01914 278 GVLMDFIAYLKARDFYSWPKFVDFLARRDPEISLQLTDAILN-GDEEAFYTALRELKKSGVRYDPEQVDALAEILA 352 (354)
T ss_pred hHHHHHHHHHhhhhhcchHHHHHHHhccChHHHHHHHHHHHc-CChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHh
Confidence 3455433 344455556677776666666777777776554 455566777888888898888888877776654
No 429
>PRK12356 glutaminase; Reviewed
Probab=29.50 E-value=3.3e+02 Score=22.58 Aligned_cols=29 Identities=10% Similarity=-0.045 Sum_probs=20.4
Q ss_pred HHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCc
Q 038429 108 FMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQF 140 (258)
Q Consensus 108 ~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~ 140 (258)
..+|+++ |.+|+...||.++..-...|.+
T Consensus 86 ~~V~~~V----G~EPSG~~FNsi~~Le~~~g~P 114 (319)
T PRK12356 86 QAVREKI----GADPTGLPFNSVIAIELHGGKP 114 (319)
T ss_pred HHHHHHh----CCCCCCCCcchHHHhhccCCCC
Confidence 4455444 8899999999998665555554
No 430
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=29.19 E-value=1.7e+02 Score=26.95 Aligned_cols=77 Identities=14% Similarity=0.188 Sum_probs=47.5
Q ss_pred hhhhhhhccCCCChHHHHHHhccCCC------CChhhHHHHHHHHhcCCChh--hHHHHHHHhHhcCCCCCCcchHHHHH
Q 038429 60 KLFTPCALSTFSSLEYARKMFDQIPQ------PNLYTWNTLIRAYSSSDEPI--QSFMIFLQLVYNSPYFPNEFTLPFVI 131 (258)
Q Consensus 60 ~li~~~~~~~~~~~~~a~~~~~~m~~------~~~~~~~~li~~~~~~g~~~--~a~~~~~~m~~~~~~~p~~~~~~~ll 131 (258)
+|..+|...| ++..+.++++.... .-...||.-|+.+.+.|.++ ++.+-..+..+...+.-|..||..|+
T Consensus 33 sl~eacv~n~--~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~ 110 (1117)
T COG5108 33 SLFEACVYNG--DFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLC 110 (1117)
T ss_pred HHHHHHHhcc--hHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHH
Confidence 7788888888 88888887775532 23455777788888888643 22222222213334556777887777
Q ss_pred HHhcCcC
Q 038429 132 KAAARPV 138 (258)
Q Consensus 132 ~~~~~~~ 138 (258)
.+.....
T Consensus 111 ~~sln~t 117 (1117)
T COG5108 111 QASLNPT 117 (1117)
T ss_pred HhhcChH
Confidence 7665533
No 431
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=28.82 E-value=91 Score=27.23 Aligned_cols=56 Identities=11% Similarity=0.059 Sum_probs=44.8
Q ss_pred CCCCceeeecCCCccCcccccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccC
Q 038429 14 HPNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALST 69 (258)
Q Consensus 14 ~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 69 (258)
......+...++-+..-.-+.+-+++.++-.+.+-.-+.|...+|.+|++.|++..
T Consensus 519 ~nqkse~im~~Gkht~~~~cknkr~gkQlASQ~ilq~lHPh~~twGSlLriYGr~s 574 (650)
T KOG4334|consen 519 GNQKSEVIMILGKHTEEAECKNKRQGKQLASQRILQKLHPHLLTWGSLLRIYGRLS 574 (650)
T ss_pred CCccceeEeeeccceeeeeeechhHHHHHHHHHHHHHhCHHhhhHHHHHHHhhhhh
Confidence 34455566666666667777888999999998888888999999999999999864
No 432
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=28.78 E-value=74 Score=25.03 Aligned_cols=58 Identities=14% Similarity=-0.008 Sum_probs=39.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC---------CChhhHHHHHHHHHcCCChHHHHHHHHHH
Q 038429 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGK---------KDVVSWNSMISGFVEGGFFEKAIELYREM 211 (258)
Q Consensus 154 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~---------~~~~~~~~li~~~~~~g~~~~a~~~~~~m 211 (258)
....--+-.-|.+.|++++|.++|+.+.. ....+...+..++.+.|+.++...+--+|
T Consensus 178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 33444577778888888888888887632 13345556777778888888777665544
No 433
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=28.47 E-value=2.4e+02 Score=24.96 Aligned_cols=38 Identities=3% Similarity=-0.026 Sum_probs=29.5
Q ss_pred ChhhHHHHHHHHhccCChhHHHHHHHHHHHcCCccccc
Q 038429 219 DEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLT 256 (258)
Q Consensus 219 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 256 (258)
+...+..++++....+....|..+++++.+.|..|..+
T Consensus 247 ~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~ 284 (484)
T PRK14956 247 GIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKF 284 (484)
T ss_pred CHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHH
Confidence 55566777777776666778999999999999887654
No 434
>smart00031 DED Death effector domain.
Probab=28.22 E-value=1.6e+02 Score=18.45 Aligned_cols=41 Identities=12% Similarity=0.236 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHH
Q 038429 201 FEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWV 242 (258)
Q Consensus 201 ~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~ 242 (258)
...+..+|.+|.+.|. .+......+...+...|+.+....+
T Consensus 37 ~~~~ldlf~~Le~~~~-l~~~nl~~L~elL~~i~R~DLl~~i 77 (79)
T smart00031 37 IKTFLDLFSALEEQGL-LSEDNLSLLAELLYRLRRLDLLRRL 77 (79)
T ss_pred cCCHHHHHHHHHHcCC-CCCccHHHHHHHHHHcCHHHHHHHh
Confidence 4677889999988864 3445555666777777777766554
No 435
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=27.96 E-value=2.8e+02 Score=21.21 Aligned_cols=28 Identities=29% Similarity=0.456 Sum_probs=18.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 038429 154 LVISNSLIHFYAVCGDLAMAYCVFVMIG 181 (258)
Q Consensus 154 ~~~~~~li~~~~~~g~~~~a~~~~~~m~ 181 (258)
....+.+++.+.-.|+++.|.++|.-+.
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLi 68 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLI 68 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4455667777777777777777776553
No 436
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=27.86 E-value=1.7e+02 Score=24.16 Aligned_cols=44 Identities=16% Similarity=0.149 Sum_probs=34.5
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHH
Q 038429 205 IELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEK 248 (258)
Q Consensus 205 ~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 248 (258)
.++|+.|...++.|....|..+.-.+++.=.+.+...+++.+..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 46778888888888888888888788888888888888877654
No 437
>cd08812 CARD_RIG-I_like Caspase activation and recruitment domains found in RIG-I-like DEAD box helicases. Caspase activation and recruitment domains (CARDs) found in Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. These helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, RIG-I and MDA5 have been shown to recognize different sets of viruses. MDA5 and RIG-I associate with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mec
Probab=27.45 E-value=1.3e+02 Score=19.32 Aligned_cols=32 Identities=13% Similarity=0.243 Sum_probs=13.1
Q ss_pred CCHHHHHHHHHhcCC-CChhhHHHHHHHHHcCC
Q 038429 168 GDLAMAYCVFVMIGK-KDVVSWNSMISGFVEGG 199 (258)
Q Consensus 168 g~~~~a~~~~~~m~~-~~~~~~~~li~~~~~~g 199 (258)
|+.+.|..+++.+.+ ....-|..++.++-..|
T Consensus 48 g~~~aa~~Ll~~L~~~r~~~wf~~Fl~AL~~~g 80 (88)
T cd08812 48 GNIAAAEELLDRLERCDKPGWFQAFLDALRRTG 80 (88)
T ss_pred ChHHHHHHHHHHHHHhccCCcHHHHHHHHHHcC
Confidence 444444444444433 23333344444444433
No 438
>PRK14015 pepN aminopeptidase N; Provisional
Probab=27.44 E-value=5.7e+02 Score=24.71 Aligned_cols=105 Identities=10% Similarity=0.049 Sum_probs=63.4
Q ss_pred cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----ChhhHHHHHHHHHcCCCh------HHHHHHHHHHHHcCCCCC
Q 038429 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKK-----DVVSWNSMISGFVEGGFF------EKAIELYREMEVENVKPD 219 (258)
Q Consensus 151 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~~~~~~li~~~~~~g~~------~~a~~~~~~m~~~~~~p~ 219 (258)
+.|..+.+.-...-+.....+....+-..|..| |..-..+|+.+++..+.. ....+++.+..-.=-+-|
T Consensus 744 ~~~~lv~~kwf~~qa~~~~~~~~~~v~~l~~hp~f~~~npn~~ral~~~f~~~n~~~fh~~~g~gy~~~~~~i~~ld~~N 823 (875)
T PRK14015 744 KDDPLVMDKWFALQATSPAPDTLERVRALMQHPAFDLKNPNRVRSLIGAFAAANPAGFHAADGSGYRFLADQILALDKIN 823 (875)
T ss_pred CCCchhhHHHHHHHhCCCCcCHHHHHHHHhcCCCCCCCCCcHHHHHHHHHhhcCCcccCCCCCcHHHHHHHHHHHhcCcC
Confidence 666666665555555444444444444445444 666788999999765543 344666655543322357
Q ss_pred hhhHHHHHHHHhccCChhHHH-----HHHHHHHHc-CCcccc
Q 038429 220 EVTMVVVLSACAKKRDLEFGI-----WVSSHIEKN-GIKMDL 255 (258)
Q Consensus 220 ~~t~~~li~~~~~~g~~~~a~-----~~~~~m~~~-g~~p~~ 255 (258)
..+-..|+..+.+-.+++... ..++.+.+. ++.+|+
T Consensus 824 p~~aarl~~~~~~~~~~~~~r~~~~~~~l~~i~~~~~ls~d~ 865 (875)
T PRK14015 824 PQVAARLATPLIRWRRYDPKRQALMRAALERIAALPNLSKDV 865 (875)
T ss_pred HHHHHHHHHHhhhhhccCHHHHHHHHHHHHHHHhCcCCCccH
Confidence 777788999998887776544 444455443 666665
No 439
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=27.37 E-value=80 Score=14.78 Aligned_cols=28 Identities=11% Similarity=-0.110 Sum_probs=16.8
Q ss_pred cchhhHHHHHHHHHhhccCcchhhhhhhh
Q 038429 34 TNQKQLKRIHAQMLSTDFFFDPYSASKLF 62 (258)
Q Consensus 34 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li 62 (258)
|+.+.+..+|+.++... +-+...|...+
T Consensus 1 ~~~~~~r~i~e~~l~~~-~~~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEKF-PKSVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHHC-CCChHHHHHHH
Confidence 35667777787777654 24555555444
No 440
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=27.04 E-value=1.2e+02 Score=24.53 Aligned_cols=22 Identities=14% Similarity=-0.121 Sum_probs=11.1
Q ss_pred CChhhHHHHHHHHhccCChhHH
Q 038429 218 PDEVTMVVVLSACAKKRDLEFG 239 (258)
Q Consensus 218 p~~~t~~~li~~~~~~g~~~~a 239 (258)
.|...|..++.||.-.|+.+.+
T Consensus 195 Fd~~~Y~~v~~AY~lLgk~~~~ 216 (291)
T PF10475_consen 195 FDPDKYSKVQEAYQLLGKTQSA 216 (291)
T ss_pred CCHHHHHHHHHHHHHHhhhHHH
Confidence 3555555555555555544433
No 441
>PRK09462 fur ferric uptake regulator; Provisional
Probab=26.82 E-value=1.8e+02 Score=20.67 Aligned_cols=23 Identities=4% Similarity=-0.042 Sum_probs=10.9
Q ss_pred HHHHHHHhc-CCHHHHHHHHHhcC
Q 038429 159 SLIHFYAVC-GDLAMAYCVFVMIG 181 (258)
Q Consensus 159 ~li~~~~~~-g~~~~a~~~~~~m~ 181 (258)
.++..+... +..-.|.++++.++
T Consensus 21 ~Il~~l~~~~~~h~sa~eI~~~l~ 44 (148)
T PRK09462 21 KILEVLQEPDNHHVSAEDLYKRLI 44 (148)
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHH
Confidence 344444433 34455555555554
No 442
>PHA03100 ankyrin repeat protein; Provisional
Probab=25.74 E-value=4.4e+02 Score=22.80 Aligned_cols=170 Identities=15% Similarity=0.054 Sum_probs=84.4
Q ss_pred HHHHHHHHhhccCcchhhh--hhhhhhhh--ccCCCChHHHHHHhccCCCC---ChhhHHHHHHHHhcCCChhhHHHHHH
Q 038429 40 KRIHAQMLSTDFFFDPYSA--SKLFTPCA--LSTFSSLEYARKMFDQIPQP---NLYTWNTLIRAYSSSDEPIQSFMIFL 112 (258)
Q Consensus 40 ~~~~~~m~~~~~~~~~~~~--~~li~~~~--~~~~~~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~a~~~~~ 112 (258)
.++.+.+.+.|..++...- .+.+...+ ..| +.+-+..+++....+ +..-+ +.+...++.|. .-.++++
T Consensus 86 ~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~--~~~iv~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~--~~~~iv~ 160 (480)
T PHA03100 86 KEIVKLLLEYGANVNAPDNNGITPLLYAISKKSN--SYSIVEYLLDNGANVNIKNSDGE-NLLHLYLESNK--IDLKILK 160 (480)
T ss_pred HHHHHHHHHCCCCCCCCCCCCCchhhHHHhcccC--hHHHHHHHHHcCCCCCccCCCCC-cHHHHHHHcCC--ChHHHHH
Confidence 3445555666665543221 23344444 667 888888888765443 22223 34555555662 1123334
Q ss_pred HhHhcCCCCCCcch--HHHHHHHhcCcCCcchhhhhhhcc-cCc--------hhHHHHHHHHHHhcCC--HHHHHHHHHh
Q 038429 113 QLVYNSPYFPNEFT--LPFVIKAAARPVQFRVGQAIHGMF-EDD--------LVISNSLIHFYAVCGD--LAMAYCVFVM 179 (258)
Q Consensus 113 ~m~~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~-~~~--------~~~~~~li~~~~~~g~--~~~a~~~~~~ 179 (258)
.+ .+.|..++... -.+.+..++..|+.+.+..+++.- .++ ...+.+.++..+..|+ .+-+.-+++.
T Consensus 161 ~L-l~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~ 239 (480)
T PHA03100 161 LL-IDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSY 239 (480)
T ss_pred HH-HHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHc
Confidence 44 44555444322 123455556666776666665544 111 1222455566666777 6666666654
Q ss_pred cCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCh
Q 038429 180 IGK---KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDE 220 (258)
Q Consensus 180 m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 220 (258)
-.. +|....+.|..+ +..|+.+ +++.+.+.|..|+.
T Consensus 240 g~din~~d~~g~TpL~~A-~~~~~~~----iv~~Ll~~gad~n~ 278 (480)
T PHA03100 240 GVPINIKDVYGFTPLHYA-VYNNNPE----FVKYLLDLGANPNL 278 (480)
T ss_pred CCCCCCCCCCCCCHHHHH-HHcCCHH----HHHHHHHcCCCCCc
Confidence 222 344444444443 4445543 34444555554443
No 443
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=25.73 E-value=6.3e+02 Score=24.63 Aligned_cols=26 Identities=15% Similarity=0.231 Sum_probs=12.1
Q ss_pred hhhhhhhhccCCCChHHHHHHhccCC
Q 038429 59 SKLFTPCALSTFSSLEYARKMFDQIP 84 (258)
Q Consensus 59 ~~li~~~~~~~~~~~~~a~~~~~~m~ 84 (258)
..+|.+|.+.+..++++|+.+..++.
T Consensus 816 ~~IlTa~vkk~Pp~le~aL~~I~~l~ 841 (928)
T PF04762_consen 816 QPILTAYVKKSPPDLEEALQLIKELR 841 (928)
T ss_pred HHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 34444444444444555555544444
No 444
>PF02631 RecX: RecX family; InterPro: IPR003783 RecX is a putative bacterial regulatory protein []. The gene encoding RecX is found downstream of recA, and it is suggested that the RecX protein might be regulator of RecA activity by interaction with the RecA protein or filament [].; GO: 0006282 regulation of DNA repair; PDB: 3DFG_A 3D5L_B 3C1D_B 3E3V_A.
Probab=25.69 E-value=1.7e+02 Score=19.83 Aligned_cols=10 Identities=0% Similarity=0.365 Sum_probs=3.8
Q ss_pred HHHHHHHcCC
Q 038429 207 LYREMEVENV 216 (258)
Q Consensus 207 ~~~~m~~~~~ 216 (258)
+-.++.+.|+
T Consensus 48 I~~~L~~kGi 57 (121)
T PF02631_consen 48 IRQKLKQKGI 57 (121)
T ss_dssp HHHHHHHTT-
T ss_pred HHHHHHHHCC
Confidence 3334444444
No 445
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=25.49 E-value=4.4e+02 Score=22.74 Aligned_cols=89 Identities=16% Similarity=0.112 Sum_probs=39.3
Q ss_pred cCchhHHHHHHHHHHhcCCHHHHHHHHHh-cCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 038429 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVM-IGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSA 229 (258)
Q Consensus 151 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~-m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~ 229 (258)
..|..+--.-+.+....|. ..|...... ..+++....-.+...+...|. +++...+....+. ..+-...+.+
T Consensus 189 d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~-~~a~~~L~~ll~d-----~~vr~~a~~A 261 (410)
T TIGR02270 189 DSDPEVRFAALEAGLLAGS-RLAWGVCRRFQVLEGGPHRQRLLVLLAVAGG-PDAQAWLRELLQA-----AATRREALRA 261 (410)
T ss_pred CCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHhccCccHHHHHHHHHHhCCc-hhHHHHHHHHhcC-----hhhHHHHHHH
Confidence 3444444444445555555 344433333 333333333333333333222 2444444443332 1245556666
Q ss_pred HhccCChhHHHHHHHHH
Q 038429 230 CAKKRDLEFGIWVSSHI 246 (258)
Q Consensus 230 ~~~~g~~~~a~~~~~~m 246 (258)
+.+.|+......+...|
T Consensus 262 lG~lg~p~av~~L~~~l 278 (410)
T TIGR02270 262 VGLVGDVEAAPWCLEAM 278 (410)
T ss_pred HHHcCCcchHHHHHHHh
Confidence 66666666555555444
No 446
>PRK11906 transcriptional regulator; Provisional
Probab=25.38 E-value=4.7e+02 Score=22.98 Aligned_cols=155 Identities=9% Similarity=-0.000 Sum_probs=85.4
Q ss_pred hhH--HHHHHHHhcCC-----ChhhHHHHHHHhHhcCCCCCCc-chHHHHHHHhc--------C-cCCcchhhhhhhcc-
Q 038429 89 YTW--NTLIRAYSSSD-----EPIQSFMIFLQLVYNSPYFPNE-FTLPFVIKAAA--------R-PVQFRVGQAIHGMF- 150 (258)
Q Consensus 89 ~~~--~~li~~~~~~g-----~~~~a~~~~~~m~~~~~~~p~~-~~~~~ll~~~~--------~-~~~~~~a~~~~~~~- 150 (258)
..| ...+++..... ..+.|+.+|.+......+.|+- ..|..+-.++. . ..+..+|.+.-+..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 556 66666665522 3567788888774444555553 33333322221 1 11222333333333
Q ss_pred ---cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCh-hhHHHHHHHHHcCCChHHHHHHHHHHHHcC-CCCChhhH
Q 038429 151 ---EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK--KDV-VSWNSMISGFVEGGFFEKAIELYREMEVEN-VKPDEVTM 223 (258)
Q Consensus 151 ---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~t~ 223 (258)
+.|......+-.+..-.|+++.|...|++... ||. .+|-..--.+.-+|+.++|.+.+++..+.. .+--....
T Consensus 332 eld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~ 411 (458)
T PRK11906 332 DITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVI 411 (458)
T ss_pred hcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHH
Confidence 66777777777777778889999999987653 533 233333333455688999998888854431 11122334
Q ss_pred HHHHHHHhccCChhHHHHHHH
Q 038429 224 VVVLSACAKKRDLEFGIWVSS 244 (258)
Q Consensus 224 ~~li~~~~~~g~~~~a~~~~~ 244 (258)
...++.|+.. .+++|..++-
T Consensus 412 ~~~~~~~~~~-~~~~~~~~~~ 431 (458)
T PRK11906 412 KECVDMYVPN-PLKNNIKLYY 431 (458)
T ss_pred HHHHHHHcCC-chhhhHHHHh
Confidence 4445455553 4566666554
No 447
>COG5210 GTPase-activating protein [General function prediction only]
Probab=25.33 E-value=1.7e+02 Score=25.88 Aligned_cols=48 Identities=19% Similarity=0.185 Sum_probs=41.7
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHcCCc
Q 038429 205 IELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIK 252 (258)
Q Consensus 205 ~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 252 (258)
-+++..|...|+.+...++..++..+.+....+.+.++++.+--.|..
T Consensus 362 p~l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~lriwD~lf~eg~~ 409 (496)
T COG5210 362 PELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDCLFLEGSS 409 (496)
T ss_pred HHHHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHhccH
Confidence 467888899999999999999999999999999999999988766643
No 448
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=25.04 E-value=4.1e+02 Score=23.70 Aligned_cols=73 Identities=11% Similarity=0.011 Sum_probs=47.3
Q ss_pred HHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCC-----------------CCChhhHHHHHHHHhcCCChhhH
Q 038429 45 QMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIP-----------------QPNLYTWNTLIRAYSSSDEPIQS 107 (258)
Q Consensus 45 ~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~-----------------~~~~~~~~~li~~~~~~g~~~~a 107 (258)
.+.+.|+..+......++... .| +...|..++++.. ..+......++.++.. |+.+.+
T Consensus 190 il~~egi~~~~~al~~ia~~s--~G--slR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al~~-~d~~~~ 264 (509)
T PRK14958 190 LLKEENVEFENAALDLLARAA--NG--SVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEALAA-KAGDRL 264 (509)
T ss_pred HHHHcCCCCCHHHHHHHHHHc--CC--cHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHHHc-CCHHHH
Confidence 344567776666666555443 35 8888877775421 1333344556666555 788999
Q ss_pred HHHHHHhHhcCCCCCC
Q 038429 108 FMIFLQLVYNSPYFPN 123 (258)
Q Consensus 108 ~~~~~~m~~~~~~~p~ 123 (258)
+.++++| ...|..|.
T Consensus 265 l~~~~~l-~~~g~~~~ 279 (509)
T PRK14958 265 LGCVTRL-VEQGVDFS 279 (509)
T ss_pred HHHHHHH-HHcCCCHH
Confidence 9999999 88887765
No 449
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=25.02 E-value=4e+02 Score=22.11 Aligned_cols=21 Identities=14% Similarity=0.154 Sum_probs=17.0
Q ss_pred hhhHHHHHHHHhccCChhHHH
Q 038429 220 EVTMVVVLSACAKKRDLEFGI 240 (258)
Q Consensus 220 ~~t~~~li~~~~~~g~~~~a~ 240 (258)
..+|..|+.+++..|+.+...
T Consensus 321 lK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 321 LKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HHhhhHHHHHHhcCChHHHHH
Confidence 567888999999999887654
No 450
>TIGR03184 DNA_S_dndE DNA sulfur modification protein DndE. This model describes the DndE protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=24.91 E-value=1.5e+02 Score=19.94 Aligned_cols=91 Identities=10% Similarity=0.008 Sum_probs=42.5
Q ss_pred hhHHHHHHHHHh-hccCc-chhhhhhhhhhhhccCCCChHHHHHHhccCCCCChhhHHHHHHHHhcCCChhhHHHHHHHh
Q 038429 37 KQLKRIHAQMLS-TDFFF-DPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQL 114 (258)
Q Consensus 37 ~~a~~~~~~m~~-~~~~~-~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 114 (258)
+++...+..+++ .|+.| |...--++-..+..-. .+.....-.+.-.+-|-.|| .|++++....+-..
T Consensus 5 ~~a~~~L~~Lk~~Tgi~~~NilcR~A~~~SL~~~~--~~~~~~~~~d~~~E~~~~T~---------~Ge~~~i~~alLkq 73 (105)
T TIGR03184 5 QTAKDQLRRLKRRTGLTPWNILCRWAFCLSLEEGS--TPGVADIKLDGNVEIDWYTF---------AGEYGDIYLALLKQ 73 (105)
T ss_pred HHHHHHHHHHhcccCCCcchHHHHHHHHHHHhcCC--CCCccccCCCCCeEEEeeee---------cCchHHHHHHHHHH
Confidence 456677777765 48888 5544333333333222 11111111111111122222 26666655544333
Q ss_pred H-hcCCCCCCcchHHHHHHHhcCcC
Q 038429 115 V-YNSPYFPNEFTLPFVIKAAARPV 138 (258)
Q Consensus 115 ~-~~~~~~p~~~~~~~ll~~~~~~~ 138 (258)
. ...+..++...+...++++...|
T Consensus 74 ~~~~~~~~~d~e~l~~~~~lHl~rG 98 (105)
T TIGR03184 74 RCVADGPELDDESLAKALNLHVHRG 98 (105)
T ss_pred HHHccCCCCCHHHHHHHHHHHHHHH
Confidence 0 14566667777777777666554
No 451
>PF08986 DUF1889: Domain of unknown function (DUF1889); InterPro: IPR015079 This family consist of hypothetical bacterial proteins. ; PDB: 2JN8_A 2ES9_A.
Probab=24.89 E-value=1.9e+02 Score=19.03 Aligned_cols=48 Identities=15% Similarity=0.036 Sum_probs=22.7
Q ss_pred HHHHHHHHHhcCC----C---ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCC
Q 038429 170 LAMAYCVFVMIGK----K---DVVSWNSMISGFVEGGFFEKAIELYREMEVENVK 217 (258)
Q Consensus 170 ~~~a~~~~~~m~~----~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 217 (258)
+++|+++..-|.. | |..|-.-+++-+-..|-...|..+..+-.++|..
T Consensus 25 IdKALDFIggMntSas~P~sMdESTAKGi~KyL~elGvPasa~dv~aRg~qeGWn 79 (119)
T PF08986_consen 25 IDKALDFIGGMNTSASVPHSMDESTAKGIFKYLKELGVPASAADVTARGEQEGWN 79 (119)
T ss_dssp HHHHHHHHHTS-TT-SS--HCCCHHHHHHHHHHHHCT----HHHHHHHHHHCT--
T ss_pred HHHHHHHhcccccCCCCCCccchHHHHHHHHHHHHcCCCCCHHHHHHhcccccCC
Confidence 5666666666643 2 4445555555555555555555555555555543
No 452
>TIGR01529 argR_whole arginine repressor. This model includes most members of the arginine-responsive transcriptional regulator family ArgR. This hexameric protein binds DNA at its amino end to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbor-joining tree, some of these paralogous sequences show long branches and differ significantly in an otherwise well-conserved C-terminal region motif GT[VIL][AC]GDDT. These paralogs are excluded from the seed and score in the gray zone of this model, between trusted and noise cutoffs.
Probab=24.71 E-value=1.6e+02 Score=21.11 Aligned_cols=40 Identities=15% Similarity=0.128 Sum_probs=31.3
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 038429 191 MISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230 (258)
Q Consensus 191 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~ 230 (258)
+|..+...+....+.++.+.+.+.|+..+..|....++-+
T Consensus 6 ~i~~Li~~~~i~tqeeL~~~L~~~G~~vsqaTIsRdL~el 45 (146)
T TIGR01529 6 RIKEIITEEKISTQEELVALLKAEGIEVTQATVSRDLREL 45 (146)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHHHc
Confidence 4566667788888889999998889888888876666644
No 453
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=24.60 E-value=3.1e+02 Score=21.14 Aligned_cols=19 Identities=5% Similarity=-0.095 Sum_probs=10.3
Q ss_pred hccCChhHHHHHHHHHHHc
Q 038429 231 AKKRDLEFGIWVSSHIEKN 249 (258)
Q Consensus 231 ~~~g~~~~a~~~~~~m~~~ 249 (258)
.+.|+.++|.+.|..+...
T Consensus 176 rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 176 RRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHhCCHHHHHHHHHHHHcC
Confidence 3455555555555555543
No 454
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=24.36 E-value=4.2e+02 Score=22.04 Aligned_cols=19 Identities=16% Similarity=0.225 Sum_probs=10.4
Q ss_pred hhHHHHHHHHHHhcCCHHH
Q 038429 154 LVISNSLIHFYAVCGDLAM 172 (258)
Q Consensus 154 ~~~~~~li~~~~~~g~~~~ 172 (258)
.-+|.-|+.++|..|+.+-
T Consensus 321 lK~yaPLL~af~s~g~sEL 339 (412)
T KOG2297|consen 321 LKQYAPLLAAFCSQGQSEL 339 (412)
T ss_pred HHhhhHHHHHHhcCChHHH
Confidence 3445556666666665443
No 455
>PRK09462 fur ferric uptake regulator; Provisional
Probab=24.13 E-value=2.7e+02 Score=19.77 Aligned_cols=48 Identities=6% Similarity=-0.025 Sum_probs=30.0
Q ss_pred HHHHHHHhcC-CChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCc
Q 038429 92 NTLIRAYSSS-DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQF 140 (258)
Q Consensus 92 ~~li~~~~~~-g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~ 140 (258)
..++..+... +..-.|.++++.+ ++.+...+..|.---|+.+...|-+
T Consensus 20 ~~Il~~l~~~~~~h~sa~eI~~~l-~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 20 LKILEVLQEPDNHHVSAEDLYKRL-IDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHH-HhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 4455555543 3567777777777 6666666666665566666666644
No 456
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=24.12 E-value=2.2e+02 Score=18.71 Aligned_cols=49 Identities=8% Similarity=-0.040 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHcCC
Q 038429 201 FEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGI 251 (258)
Q Consensus 201 ~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 251 (258)
-+...+++..-... .....|+..|+.++...|.-.-|..+-+.+.+.|.
T Consensus 47 ~eq~~qmL~~W~~~--~G~~At~~~L~~aL~~~~~~~~Ae~I~~~l~~~~~ 95 (96)
T cd08315 47 REQLYQMLLTWVNK--TGRKASVNTLLDALEAIGLRLAKESIQDELISSGK 95 (96)
T ss_pred HHHHHHHHHHHHHh--hCCCcHHHHHHHHHHHcccccHHHHHHHHHHHcCC
Confidence 34444444433332 12466788899999888888888888888877764
No 457
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=24.11 E-value=2.1e+02 Score=18.50 Aligned_cols=56 Identities=11% Similarity=0.094 Sum_probs=28.0
Q ss_pred HHhcCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCh
Q 038429 177 FVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDL 236 (258)
Q Consensus 177 ~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~ 236 (258)
+..+.+.++.|-...=..-+..-..+++..+++.+...| ...|..+..++...|..
T Consensus 26 ~~~L~~~gvlt~~~~~~I~~~~t~~~k~~~Lld~L~~RG----~~AF~~F~~aL~~~~~~ 81 (90)
T cd08332 26 LIHLLQKDILTDSMAESIMAKPTSFSQNVALLNLLPKRG----PRAFSAFCEALRETSQE 81 (90)
T ss_pred HHHHHHcCCCCHHHHHHHHcCCCcHHHHHHHHHHHHHhC----hhHHHHHHHHHHhcChH
Confidence 333333344444433333334445566666666666654 34566666666554443
No 458
>PF07875 Coat_F: Coat F domain; InterPro: IPR012851 The Coat F proteins contribute to the Bacillales spore coat. They occur multiple times in the genomes in which they are found. Bacillus subtilis endospore protein coats protect them and may play a role in their germination []. Spore coat protein F, on the outer surface of the endospore, is one of a suite of proteins that could be used to differentiate between members of the Bacillus genus [].
Probab=24.06 E-value=88 Score=18.55 Aligned_cols=18 Identities=6% Similarity=0.017 Sum_probs=14.1
Q ss_pred hhHHHHHHHHHHHcCCcc
Q 038429 236 LEFGIWVSSHIEKNGIKM 253 (258)
Q Consensus 236 ~~~a~~~~~~m~~~g~~p 253 (258)
.+...++|+.|.++|+-|
T Consensus 44 ~~~~~~l~~~m~~kGwY~ 61 (64)
T PF07875_consen 44 QQMQYELFNYMNQKGWYQ 61 (64)
T ss_pred HHHHHHHHHHHHHcCCcC
Confidence 566788888888888765
No 459
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=24.00 E-value=5.4e+02 Score=23.23 Aligned_cols=94 Identities=12% Similarity=0.063 Sum_probs=42.1
Q ss_pred chhHHHHHHHHHHhcCC--HHHHHHHHHhcCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 038429 153 DLVISNSLIHFYAVCGD--LAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230 (258)
Q Consensus 153 ~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~ 230 (258)
+...|-.-+..+..+++ ......++....-++...-.-++..|.+.|-.+.|.++.+.+-..-+ ...-|...+.-+
T Consensus 371 ~~~lW~vai~yL~~c~~~g~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~ 448 (566)
T PF07575_consen 371 HHSLWQVAIGYLSSCPDEGRERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWF 448 (566)
T ss_dssp -TTTHHHHHHHHHS-SSS-HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHH
Confidence 33344444444444332 22222333333334556677788888888888888888877755433 244577777788
Q ss_pred hccCChhHHHHHHHHHHH
Q 038429 231 AKKRDLEFGIWVSSHIEK 248 (258)
Q Consensus 231 ~~~g~~~~a~~~~~~m~~ 248 (258)
.+.|+......+.+.+.+
T Consensus 449 ~ra~d~~~v~~i~~~ll~ 466 (566)
T PF07575_consen 449 IRAGDYSLVTRIADRLLE 466 (566)
T ss_dssp H-----------------
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 888888887777776654
No 460
>PF11491 DUF3213: Protein of unknown function (DUF3213) ; InterPro: IPR021583 The backbone structure of this family of proteins has been determined however the function remains unknown. The protein has an alpha and beta structure with a ferredoxin-like fold []. ; PDB: 2F40_A.
Probab=23.88 E-value=32 Score=21.84 Aligned_cols=25 Identities=20% Similarity=0.012 Sum_probs=12.1
Q ss_pred hcCCCCCCcchHHHHHHHhcCcCCc
Q 038429 116 YNSPYFPNEFTLPFVIKAAARPVQF 140 (258)
Q Consensus 116 ~~~~~~p~~~~~~~ll~~~~~~~~~ 140 (258)
.+..+..+..+|...|++|++.|.+
T Consensus 16 ~QYeLsk~~~vyRvFiNgYar~g~V 40 (88)
T PF11491_consen 16 KQYELSKNEAVYRVFINGYARNGFV 40 (88)
T ss_dssp HHHTTTTTTTB------TTSS--EE
T ss_pred HHHHhhcccceeeeeecccccceEE
Confidence 3445667888999999999998853
No 461
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=23.82 E-value=3e+02 Score=21.51 Aligned_cols=57 Identities=14% Similarity=0.253 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-----ChhhHHHHHHHHhccCChhHHHHHHHHH
Q 038429 188 WNSMISGFVEGGFFEKAIELYREMEVENVKP-----DEVTMVVVLSACAKKRDLEFGIWVSSHI 246 (258)
Q Consensus 188 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-----~~~t~~~li~~~~~~g~~~~a~~~~~~m 246 (258)
+|.||=-|.-...+.+|...|.. ..|+.| +...=..-|+.....|++++|.+..+.+
T Consensus 29 ~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l 90 (228)
T KOG2659|consen 29 LNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQL 90 (228)
T ss_pred HHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHh
No 462
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=23.39 E-value=4.1e+02 Score=21.63 Aligned_cols=72 Identities=8% Similarity=-0.015 Sum_probs=37.4
Q ss_pred cchhhHHHHHHHHHhhccCcchh---hhhhhhhhhhccCCCChHHHHHHhccCCC---------CChhhHHHHHHHHhcC
Q 038429 34 TNQKQLKRIHAQMLSTDFFFDPY---SASKLFTPCALSTFSSLEYARKMFDQIPQ---------PNLYTWNTLIRAYSSS 101 (258)
Q Consensus 34 ~~~~~a~~~~~~m~~~~~~~~~~---~~~~li~~~~~~~~~~~~~a~~~~~~m~~---------~~~~~~~~li~~~~~~ 101 (258)
..+++|..-|...+...-....+ ....+|..+.+.+ ++++....+.++.. -+..+.|.++.--..+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~--~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLG--NYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccc--cHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 35666666666666543222222 2344566666666 66666666665531 2334455555555544
Q ss_pred CChhhH
Q 038429 102 DEPIQS 107 (258)
Q Consensus 102 g~~~~a 107 (258)
.+.+--
T Consensus 119 ~~m~LL 124 (440)
T KOG1464|consen 119 KNMDLL 124 (440)
T ss_pred hhhHHH
Confidence 444333
No 463
>PRK11905 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed
Probab=23.34 E-value=2.6e+02 Score=28.02 Aligned_cols=142 Identities=11% Similarity=0.020 Sum_probs=72.0
Q ss_pred hhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc---cCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 038429 105 IQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF---EDDLVISNSLIHFYAVCGDLAMAYCVFVMIG 181 (258)
Q Consensus 105 ~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 181 (258)
+.|.++.+.+ +....... ...++.-|.-+.+-.-+..++.+. -||..|-+.||.==...|+|.+-. ..-.
T Consensus 50 ~~a~~l~~~~-r~~~~~~~---~~~~~~e~~l~~~eg~~lm~laeallr~pd~~t~d~li~dk~~~~~w~~h~---~~~~ 122 (1208)
T PRK11905 50 ERARKLVEAL-RAKRKGTG---VEALLQEYSLSSQEGVALMCLAEALLRIPDTATRDALIRDKIAPGDWKSHL---GGSK 122 (1208)
T ss_pred HHHHHHHHHH-HcCCCccc---HHHHHHhcCCCcHHHHHHHHHHHHhhcCCChHHHHHHHHHHhccCChhhhc---CCCC
Confidence 3445555555 43322111 555666666555555555555444 677777777776666666653211 1111
Q ss_pred C--CChhhHHHHHHHHHcCC-ChHHHHHHHHHHHHcCCCCChh-----hHHHHHHHHhccCChhHHHHHHHHHHHcCCcc
Q 038429 182 K--KDVVSWNSMISGFVEGG-FFEKAIELYREMEVENVKPDEV-----TMVVVLSACAKKRDLEFGIWVSSHIEKNGIKM 253 (258)
Q Consensus 182 ~--~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~-----t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 253 (258)
. -|..||..++.+-.-.. +-..-..++.+|.++.-.|-.. ....|-+-|+-...+++|.+..+++.+.|+..
T Consensus 123 ~~~vna~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~am~~~~~qFv~Geti~eal~~~~~l~~~G~~~ 202 (1208)
T PRK11905 123 SLFVNAATWGLMLTGKLLSTVNDRGLSAALTRLIARLGEPVIRKAVDMAMRMMGEQFVTGETIEEALKRARELEARGYRY 202 (1208)
T ss_pred cceeeHHHHHHHHhceecCccccCCHHHHHHHHHHhccHHHHHHHHHHHHHHHhCeeccCCCHHHHHHHHHHHHhCCCEE
Confidence 1 15566666665443321 1122234555555443333221 12344444555566777777777777776653
No 464
>COG0292 RplT Ribosomal protein L20 [Translation, ribosomal structure and biogenesis]
Probab=23.24 E-value=86 Score=21.29 Aligned_cols=46 Identities=13% Similarity=0.166 Sum_probs=24.9
Q ss_pred hhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCCCChhhHHHHHH
Q 038429 48 STDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIR 96 (258)
Q Consensus 48 ~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~ 96 (258)
..+...+..+|+.+|+++-++| ++-=..++.++--.|+..|+.++.
T Consensus 66 NAA~R~~GlsYS~fi~gLkkA~---I~inRKvLadlAi~d~~aF~~lv~ 111 (118)
T COG0292 66 NAAARENGLSYSRFINGLKKAG---IEIDRKVLADLAINDPAAFAALVE 111 (118)
T ss_pred HHHHHHcCCcHHHHHHHHHHcC---chhhHHHHHHHHhcCHHHHHHHHH
Confidence 3344455556666666666654 333344455554455666655554
No 465
>PHA00425 DNA packaging protein, small subunit
Probab=23.11 E-value=2.1e+02 Score=18.12 Aligned_cols=31 Identities=13% Similarity=0.243 Sum_probs=20.3
Q ss_pred ChHHHHHHhccCCC---CChhhHHHHHHHHhcCC
Q 038429 72 SLEYARKMFDQIPQ---PNLYTWNTLIRAYSSSD 102 (258)
Q Consensus 72 ~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g 102 (258)
+-+.|..++..+.. +++..||++-..+.+++
T Consensus 14 DTE~a~~mL~DL~ddekRtPQLYnAIgKlL~RHk 47 (88)
T PHA00425 14 DTEMAQRMLADLKDDEKRTPQLYNAIGKLLDRHK 47 (88)
T ss_pred hHHHHHHHHHHhcCccccChHHHHHHHHHHHHhc
Confidence 55666667666643 67777887777666653
No 466
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=23.01 E-value=5e+02 Score=22.49 Aligned_cols=85 Identities=13% Similarity=0.057 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC------CChhhHHHHHHHHHcCCChHHHHHHHHHHHHc---------CCCCChh
Q 038429 157 SNSLIHFYAVCGDLAMAYCVFVMIGK------KDVVSWNSMISGFVEGGFFEKAIELYREMEVE---------NVKPDEV 221 (258)
Q Consensus 157 ~~~li~~~~~~g~~~~a~~~~~~m~~------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---------~~~p~~~ 221 (258)
+.-+-+-|..+|+++.|.+.|.+.+. ..+..|-.+|..-.-.|+|.....+..+.... .+.+-..
T Consensus 153 ~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl~ 232 (466)
T KOG0686|consen 153 LEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKLK 232 (466)
T ss_pred HHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcchH
Q ss_pred hHHHHHHHHhccCChhHHHHHH
Q 038429 222 TMVVVLSACAKKRDLEFGIWVS 243 (258)
Q Consensus 222 t~~~li~~~~~~g~~~~a~~~~ 243 (258)
.+..+..-+.+ ++..|...|
T Consensus 233 C~agLa~L~lk--kyk~aa~~f 252 (466)
T KOG0686|consen 233 CAAGLANLLLK--KYKSAAKYF 252 (466)
T ss_pred HHHHHHHHHHH--HHHHHHHHH
No 467
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=22.97 E-value=6.3e+02 Score=24.11 Aligned_cols=117 Identities=15% Similarity=0.087 Sum_probs=59.9
Q ss_pred HHHHHHhcCcCCcchhhhhhhcc-cCchh--HHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHcCCCh
Q 038429 128 PFVIKAAARPVQFRVGQAIHGMF-EDDLV--ISNSLIHFYAVCGDLAMAYCVFVMIGKK---DVVSWNSMISGFVEGGFF 201 (258)
Q Consensus 128 ~~ll~~~~~~~~~~~a~~~~~~~-~~~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~g~~ 201 (258)
..++.+ +..|+.+..+.+.+.- .++.. .-.+.++..+..|..+-+.-+++.-..+ |..-.+.|..+ +..|+.
T Consensus 527 ~~L~~A-a~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A-~~~g~~ 604 (823)
T PLN03192 527 SNLLTV-ASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNA-ISAKHH 604 (823)
T ss_pred hHHHHH-HHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHH-HHhCCH
Confidence 344444 4567877776666554 22222 1234556666778877666666543333 33344444444 445555
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHcCCccc
Q 038429 202 EKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254 (258)
Q Consensus 202 ~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 254 (258)
+-+..++ ..+-..+..+-...+...+..|+.+-+.. +.+.|..+|
T Consensus 605 ~iv~~L~----~~~~~~~~~~~~~~L~~Aa~~g~~~~v~~----Ll~~Gadin 649 (823)
T PLN03192 605 KIFRILY----HFASISDPHAAGDLLCTAAKRNDLTAMKE----LLKQGLNVD 649 (823)
T ss_pred HHHHHHH----hcCcccCcccCchHHHHHHHhCCHHHHHH----HHHCCCCCC
Confidence 5444443 22222233333345666677787765444 445666555
No 468
>TIGR02328 conserved hypothetical protein. Members of this protein are found in a small number of taxonomically well separated species, yet are strongly conserved, suggesting lateral gene transfer. Members are found in Treponema denticola, Clostridium acetobutylicum, and several of the Firmicutes. The function of this protein is unknown.
Probab=22.85 E-value=74 Score=21.65 Aligned_cols=18 Identities=11% Similarity=0.331 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHcCCcccc
Q 038429 238 FGIWVSSHIEKNGIKMDL 255 (258)
Q Consensus 238 ~a~~~~~~m~~~g~~p~~ 255 (258)
.=..+.++|.++|++||.
T Consensus 53 yH~lv~~EM~~RGY~~~~ 70 (120)
T TIGR02328 53 YHLLVMEEMATRGYHVSK 70 (120)
T ss_pred HHHHHHHHHHHcCCCCCh
Confidence 345677888888888875
No 469
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=22.85 E-value=2.4e+02 Score=20.24 Aligned_cols=44 Identities=7% Similarity=-0.002 Sum_probs=22.3
Q ss_pred HHHHHHHHHhcCC---C--ChhhHHHHHHHHHcCCChHHHHHHHHHHHH
Q 038429 170 LAMAYCVFVMIGK---K--DVVSWNSMISGFVEGGFFEKAIELYREMEV 213 (258)
Q Consensus 170 ~~~a~~~~~~m~~---~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 213 (258)
..+...+|+...+ | .....--|--++.+.|+++++.++.+.+.+
T Consensus 51 v~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 51 VQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred HHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 4445555555442 1 222222333455666666666666666554
No 470
>PF08564 CDC37_C: Cdc37 C terminal domain; InterPro: IPR013873 Cdc37 is a protein required for the activity of numerous eukaryotic protein kinases. This entry corresponds to the C-terminal domain whose function is unclear. It is found C-terminal to the Hsp90 chaperone (heat shock protein 90) binding domain IPR013874 from INTERPRO and the N-terminal kinase binding domain of Cdc37 IPR013855 from INTERPRO []. ; PDB: 1US7_B.
Probab=22.85 E-value=1e+02 Score=20.46 Aligned_cols=16 Identities=13% Similarity=-0.041 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHHcCC
Q 038429 201 FEKAIELYREMEVENV 216 (258)
Q Consensus 201 ~~~a~~~~~~m~~~~~ 216 (258)
.++|..+++.+...|+
T Consensus 49 veeAE~~v~~~~esGi 64 (99)
T PF08564_consen 49 VEEAEYHVERCIESGI 64 (99)
T ss_dssp SSHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhCCc
Confidence 6778888888887775
No 471
>PF08870 DUF1832: Domain of unknown function (DUF1832); InterPro: IPR014969 This entry describes the DndE protein encoded by an operon associated with a sulphur-containing modification to DNA []. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=22.47 E-value=1.7e+02 Score=19.97 Aligned_cols=35 Identities=14% Similarity=-0.049 Sum_probs=20.9
Q ss_pred CChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcC
Q 038429 102 DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPV 138 (258)
Q Consensus 102 g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~ 138 (258)
|+.++....+-.+ .. |...+...+...++++...|
T Consensus 62 Ge~~~~~~~ll~q-~~-g~~~d~~~l~~~~~~Hl~rG 96 (113)
T PF08870_consen 62 GEYDDIYEALLKQ-RY-GPELDDEELPKYFKLHLDRG 96 (113)
T ss_pred CchHHHHHHHHHH-Hh-CCCCCHHHHHHHHHHHHHHh
Confidence 6666665555444 32 55566677777766665554
No 472
>PF12169 DNA_pol3_gamma3: DNA polymerase III subunits gamma and tau domain III; InterPro: IPR022754 This domain is found in bacteria and eukaryotes, and is approximately 110 amino acids in length. It is found in association with PF00004 from PFAM. This domain is also present in the tau subunit before it undergoes cleavage. Domains I-III are shared between the tau and the gamma subunits, while most of the DnaB-binding Domain IV and all of the alpha-interacting Domain V are unique to tau. ; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G.
Probab=22.31 E-value=1.1e+02 Score=21.39 Aligned_cols=33 Identities=18% Similarity=0.204 Sum_probs=17.7
Q ss_pred hhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC
Q 038429 185 VVSWNSMISGFVEGGFFEKAIELYREMEVENVKP 218 (258)
Q Consensus 185 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 218 (258)
....-.++.+. ..|+..+++..++++...|..|
T Consensus 15 ~~~i~~l~~ai-~~~d~~~~l~~~~~l~~~G~d~ 47 (143)
T PF12169_consen 15 EEQIFELLDAI-LEGDAAEALELLNELLEQGKDP 47 (143)
T ss_dssp THHHHHHHHHH-HTT-HHHHHHHHHHHHHCT--H
T ss_pred HHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCH
Confidence 33444444443 4566777777777777776544
No 473
>TIGR01914 cas_Csa4 CRISPR-associated protein, Csa4 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein that tends to be found near CRISPR repeats. The species range for this species, so far, is exclusively archaeal. It is found so far in only four different species, and includes two tandem genes in Pyrococcus furiosus DSM 3638. This subfamily is found in a CRISPR/Cas locus we designate APERN, so the family is designated Csa4, for CRISPR/Cas Subtype Protein 4.
Probab=22.28 E-value=2.4e+02 Score=23.51 Aligned_cols=62 Identities=11% Similarity=-0.025 Sum_probs=37.2
Q ss_pred ChHHHHHHhccCCCCChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhc
Q 038429 72 SLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135 (258)
Q Consensus 72 ~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~ 135 (258)
++-...++++.+.+.+...-++++.+..- |+.+.-..+++.+ ++.|+.++......+...++
T Consensus 291 ~~y~~~kfvd~L~r~d~e~~~~L~~ai~~-~~~~~~Ysa~R~~-k~~g~~~~~~~v~~lae~l~ 352 (354)
T TIGR01914 291 DFYSWPKFVDFLARRDPEISLQLTDAILN-GDEEAFYTALREL-KKSGVRYDPEQVDALAEILA 352 (354)
T ss_pred hhcchHHHHHHHhccChHHHHHHHHHHHc-CChhHHHHHHHHH-hhcCCCCCHHHHHHHHHHHh
Confidence 33444445554444455555666666554 3345556677777 77788888777766665543
No 474
>PF07443 HARP: HepA-related protein (HARP); InterPro: IPR010003 This entry represents a conserved region approximately 60 residues long within eukaryotic HepA-related protein (HARP). This exhibits single-stranded DNA-dependent ATPase activity, and is ubiquitously expressed in human and mouse tissues []. Family members may contain more than one copy of this region.; GO: 0004386 helicase activity, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0016568 chromatin modification, 0005634 nucleus
Probab=22.03 E-value=49 Score=19.27 Aligned_cols=31 Identities=16% Similarity=0.220 Sum_probs=21.2
Q ss_pred CChhhHHHHHHHhHhcCCCCCCcchHHHHHHH
Q 038429 102 DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKA 133 (258)
Q Consensus 102 g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~ 133 (258)
|-.++.+.+|+.| ..+..-|....|+-.+.-
T Consensus 6 gy~~~lI~vFK~~-pSr~YD~~Tr~W~F~L~D 36 (55)
T PF07443_consen 6 GYHEELIAVFKQM-PSRNYDPKTRKWNFSLED 36 (55)
T ss_pred cCCHHHHHHHHcC-cccccCccceeeeeeHHH
Confidence 4557778888888 777777777666554443
No 475
>PLN03025 replication factor C subunit; Provisional
Probab=21.94 E-value=4.5e+02 Score=21.52 Aligned_cols=87 Identities=16% Similarity=0.167 Sum_probs=0.0
Q ss_pred cccccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhcc----------------CCCCChhhHHH
Q 038429 30 PHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQ----------------IPQPNLYTWNT 93 (258)
Q Consensus 30 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~----------------m~~~~~~~~~~ 93 (258)
+....+-+....+-..+.+.|+..+......++..+. | ++..+...++. ...+....-..
T Consensus 155 f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~--g--DlR~aln~Lq~~~~~~~~i~~~~v~~~~~~~~~~~i~~ 230 (319)
T PLN03025 155 FSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTAD--G--DMRQALNNLQATHSGFGFVNQENVFKVCDQPHPLHVKN 230 (319)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC--C--CHHHHHHHHHHHHhcCCCCCHHHHHHHcCCCCHHHHHH
Q ss_pred HHHHHhcCCChhhHHHHHHHhHhcCCCCC
Q 038429 94 LIRAYSSSDEPIQSFMIFLQLVYNSPYFP 122 (258)
Q Consensus 94 li~~~~~~g~~~~a~~~~~~m~~~~~~~p 122 (258)
++..... +++++|...+.++ ...|..|
T Consensus 231 ~i~~~~~-~~~~~a~~~l~~l-l~~g~~~ 257 (319)
T PLN03025 231 IVRNCLK-GKFDDACDGLKQL-YDLGYSP 257 (319)
T ss_pred HHHHHHc-CCHHHHHHHHHHH-HHcCCCH
No 476
>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins. The SRA-RNAs encode stable proteins that are widely expressed and upregulated in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA. This domain is also found at the C terminus of Sec31, a component of the coat protein complex II (COPII, which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). COPII has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. ; PDB: 2YRU_A.
Probab=21.92 E-value=1.5e+02 Score=21.61 Aligned_cols=18 Identities=11% Similarity=0.108 Sum_probs=9.3
Q ss_pred HhccCChhHHHHHHHHHH
Q 038429 230 CAKKRDLEFGIWVSSHIE 247 (258)
Q Consensus 230 ~~~~g~~~~a~~~~~~m~ 247 (258)
..+.++++.|.++...+.
T Consensus 100 aL~~~d~~~A~~Ih~~L~ 117 (157)
T PF07304_consen 100 ALQARDYDAADEIHVDLM 117 (157)
T ss_dssp HHHHT-HHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH
Confidence 344555666666655554
No 477
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=21.85 E-value=3.4e+02 Score=22.28 Aligned_cols=52 Identities=23% Similarity=0.143 Sum_probs=34.7
Q ss_pred HHHHcCCChHHHHHHHHHHHHcCCCCChh-------hHHHHHHHHhccCChhHHHHHHH
Q 038429 193 SGFVEGGFFEKAIELYREMEVENVKPDEV-------TMVVVLSACAKKRDLEFGIWVSS 244 (258)
Q Consensus 193 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-------t~~~li~~~~~~g~~~~a~~~~~ 244 (258)
...++.+++++|+..+.+....|...|.. |..-+...|.+.|+...--+...
T Consensus 11 ~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~ 69 (421)
T COG5159 11 NNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTIT 69 (421)
T ss_pred HHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 34456677888888888887777665544 34456677777777765554443
No 478
>PF00531 Death: Death domain; InterPro: IPR000488 The death domain (DD) is a homotypic protein interaction module composed of a bundle of six alpha-helices. DD is related in sequence and structure to the death effector domain (DED, see IPR001875 from INTERPRO) and the caspase recruitment domain (CARD, see IPR001315 from INTERPRO), which work in similar pathways and show similar interaction properties []. DD bind each other forming oligomers. Mammals have numerous and diverse DD-containing proteins []. Within these proteins, the DD domains can be found in combination with other domains, including: CARDs, DEDs, ankyrin repeats (IPR002110 from INTERPRO), caspase-like folds, kinase domains, leucine zippers (IPR002158 from INTERPRO), leucine-rich repeats (LRR) (IPR001611 from INTERPRO), TIR domains (IPR000157 from INTERPRO), and ZU5 domains (IPR000906 from INTERPRO) []. Some DD-containing proteins are involved in the regulation of apoptosis and inflammation through their activation of caspases and NF-kappaB, which typically involves interactions with TNF (tumour necrosis factor) cytokine receptors [, ]. In humans, eight of the over 30 known TNF receptors contain DD in their cytoplasmic tails; several of these TNF receptors use caspase activation as a signalling mechanism. The DD mediates self-association of these receptors, thus giving the signal to downstream events that lead to apoptosis. Other DD-containing proteins, such as ankyrin, MyD88 and pelle, are probably not directly involved in cell death signalling. DD-containing proteins also have links to innate immunity, communicating with Toll family receptors through bipartite adapter proteins such as MyD88 [].; GO: 0005515 protein binding, 0007165 signal transduction; PDB: 3OQ9_L 3EZQ_F 1E41_A 1E3Y_A 2GF5_A 2OF5_L 3EWV_E 3G5B_A 3MOP_L 2A9I_A ....
Probab=21.69 E-value=1.6e+02 Score=18.10 Aligned_cols=41 Identities=10% Similarity=0.107 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHH
Q 038429 202 EKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSS 244 (258)
Q Consensus 202 ~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~ 244 (258)
+.+.+++..-... .+...|...|+.++.+.|..+-|..+-+
T Consensus 41 ~~~~~~L~~W~~~--~~~~at~~~L~~aL~~~~~~d~~~~i~~ 81 (83)
T PF00531_consen 41 EQTYEMLQRWRQR--EGPNATVDQLIQALRDIGRNDLAEKIEQ 81 (83)
T ss_dssp HHHHHHHHHHHHH--HGSTSSHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--cCCCCcHHHHHHHHHHCCcHHHHHHHHh
Confidence 4444555444443 2456677788888888877776665543
No 479
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=21.50 E-value=1.3e+02 Score=27.17 Aligned_cols=36 Identities=11% Similarity=0.019 Sum_probs=15.5
Q ss_pred HhccCCCCChhhHHHHHHHHhcCCChhhHHHHHHHh
Q 038429 79 MFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQL 114 (258)
Q Consensus 79 ~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 114 (258)
++.+.+-.+...-.-++..|.+.|-.+.|.++.+.+
T Consensus 396 lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~ 431 (566)
T PF07575_consen 396 LLPRVPLDTNDDAEKLLEICAELGLEDVAREICKIL 431 (566)
T ss_dssp HGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHH
T ss_pred HHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 333333334444445555555555555555555544
No 480
>PF03444 HrcA_DNA-bdg: Winged helix-turn-helix transcription repressor, HrcA DNA-binding; InterPro: IPR005104 Prokaryotic cells have a defence mechanism against a sudden heat-shock stress. Commonly, they induce a set of proteins that protect cellular proteins from being denatured by heat. Among such proteins are the GroE and DnaK chaperones whose transcription is regulated by a heat-shock repressor protein HrcA. HrcA is a winged helix-turn-helix repressor that negatively regulates the transcription of dnaK and groE operons by binding the upstream CIRCE (controlling inverted repeat of chaperone expression) element. In Bacillus subtilis this element is a perfect 9 base pair inverted repeat separated by a 9 base pair spacer. The crystal structure of a heat-inducible transcriptional repressor, HrcA, from Thermotoga maritima has been reported at 2.2A resolution. HrcA is composed of three domains: an N-terminal winged helix-turn-helix domain (WHTH), a GAF-like domain, and an inserted dimerizing domain (IDD). The IDD shows a unique structural fold with an anti-parallel beta-sheet composed of three beta-strands sided by four alpha-helices. HrcA crystallises as a dimer, which is formed through hydrophobic contact between the IDDs and a limited contact that involves conserved residues between the GAF-like domains []. The structural studies suggest that the inactive form of HrcA is the dimer and this is converted to its DNA-binding form by interaction with GroEL, which binds to a conserved C-terminal sequence region [, ]. Comparison of the HrcA-CIRCE complexes from B. subtilis and Bacillus thermoglucosidasius (Geobacillus thermoglucosidasius), which grow at vastly different ranges of temperature shows that the thermostability profiles were consistent with the difference in the growth temperatures suggesting that HrcA can function as a thermosensor to detect temperature changes in cells []. Any increase in temperature causes the dissociation of the HrcA from the CIRCE complex with the concomitant activation of transcription of the groE and dnaK operons. This domain represents the winged helix-turn-helix DNA-binding domain which is located close to the N terminus of HrcA. This domain is also found at the N terminus of a set of uncharacterised proteins that have two C-terminal CBS domains. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=21.39 E-value=2.3e+02 Score=17.93 Aligned_cols=21 Identities=14% Similarity=0.271 Sum_probs=8.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHH
Q 038429 158 NSLIHFYAVCGDLAMAYCVFV 178 (258)
Q Consensus 158 ~~li~~~~~~g~~~~a~~~~~ 178 (258)
.++++.|.+.|..-....+-+
T Consensus 11 ~alV~~Y~~~~~PVgSk~ia~ 31 (78)
T PF03444_consen 11 KALVELYIETGEPVGSKTIAE 31 (78)
T ss_pred HHHHHHHHhcCCCcCHHHHHH
Confidence 344444444444444444433
No 481
>KOG4414 consensus COP9 signalosome, subunit CSN8 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=21.38 E-value=89 Score=22.37 Aligned_cols=33 Identities=18% Similarity=0.287 Sum_probs=28.0
Q ss_pred cc-CcchhhhhhhhhhhhccCCCChHHHHHHhccCC
Q 038429 50 DF-FFDPYSASKLFTPCALSTFSSLEYARKMFDQIP 84 (258)
Q Consensus 50 ~~-~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~ 84 (258)
|+ .|+-..|..++..|.-.. +.+.|.-++++.+
T Consensus 33 GIa~~~dw~Ya~~L~~Yf~~d--D~dnARfLWKRIP 66 (197)
T KOG4414|consen 33 GIATHDDWPYAIHLAGYFLHD--DCDNARFLWKRIP 66 (197)
T ss_pred CccCCCcchHHHHHHHHHHhc--cchhHHHHHHhCC
Confidence 54 366678999999999999 9999999999886
No 482
>PRK11619 lytic murein transglycosylase; Provisional
Probab=21.27 E-value=6.6e+02 Score=23.25 Aligned_cols=108 Identities=3% Similarity=-0.178 Sum_probs=62.9
Q ss_pred Ccchhhhhhhcc--------cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC--ChhhHHHHHHHHHcCCChHHHHHHH
Q 038429 139 QFRVGQAIHGMF--------EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKK--DVVSWNSMISGFVEGGFFEKAIELY 208 (258)
Q Consensus 139 ~~~~a~~~~~~~--------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~li~~~~~~g~~~~a~~~~ 208 (258)
+.+.|...+... +....++..+.......+...++..-+.....+ +......-+....+.++++.+...+
T Consensus 256 d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~~i 335 (644)
T PRK11619 256 DAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNTWL 335 (644)
T ss_pred CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHHHH
Confidence 456666666654 111223344433333333245566666654332 4455555565666888888888888
Q ss_pred HHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHH
Q 038429 209 REMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIE 247 (258)
Q Consensus 209 ~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 247 (258)
..|.... .-...-.-.+-+++...|+.++|..+|+...
T Consensus 336 ~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 336 ARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 8875432 2233334556677667899999988888764
No 483
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=21.07 E-value=6e+02 Score=22.69 Aligned_cols=35 Identities=20% Similarity=0.164 Sum_probs=21.2
Q ss_pred ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC
Q 038429 184 DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPD 219 (258)
Q Consensus 184 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 219 (258)
+....-.|+.+... |+..+|+.+++++...|..|.
T Consensus 257 ~~~~if~L~~ai~~-~d~~~Al~~l~~L~~~g~~~~ 291 (507)
T PRK06645 257 DSSVIIEFVEYIIH-RETEKAINLINKLYGSSVNLE 291 (507)
T ss_pred CHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCHH
Confidence 33344444554443 677777777777777776554
No 484
>PF14744 WASH-7_mid: WASH complex subunit 7
Probab=21.04 E-value=2.4e+02 Score=23.58 Aligned_cols=47 Identities=9% Similarity=0.111 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHc
Q 038429 201 FEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249 (258)
Q Consensus 201 ~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 249 (258)
++.|+++.+.+++.|+.+|..||--..+-+.. ++..|..+.+.++.-
T Consensus 282 ~erAekf~k~irkLG~~~dG~sylD~FR~LIt--qIGNA~gyVRmirsg 328 (350)
T PF14744_consen 282 YERAEKFNKGIRKLGLSDDGQSYLDQFRQLIT--QIGNAMGYVRMIRSG 328 (350)
T ss_pred HHHHHHHHHHHHHcCCCCCcchHHHHHHHHHH--HHhHHHHHHHHHHHH
Confidence 68899999999999999999998666655532 345566666655543
No 485
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.03 E-value=6.4e+02 Score=23.00 Aligned_cols=55 Identities=15% Similarity=0.036 Sum_probs=43.8
Q ss_pred ccCcccccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhc-cCCCChHHHHHHhccC
Q 038429 27 QRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCAL-STFSSLEYARKMFDQI 83 (258)
Q Consensus 27 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-~~~~~~~~a~~~~~~m 83 (258)
+..+.+.|.++.|+.+...+.+....-|+.....+|+.|+- +. ++.--+++++..
T Consensus 349 m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrar--eYqwiI~~~~~~ 404 (665)
T KOG2422|consen 349 MQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAR--EYQWIIELSNEP 404 (665)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHH--hHHHHHHHHHHH
Confidence 44788899999999999999988877789999999999885 44 666666666544
No 486
>PRK13342 recombination factor protein RarA; Reviewed
Probab=20.94 E-value=5.4e+02 Score=22.07 Aligned_cols=48 Identities=17% Similarity=0.120 Sum_probs=30.1
Q ss_pred hHHHHHHHHHc---CCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccC
Q 038429 187 SWNSMISGFVE---GGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKR 234 (258)
Q Consensus 187 ~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g 234 (258)
.+..+++++.+ .++.+.|+.++.+|.+.|..|....-..++.++-..|
T Consensus 229 ~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 229 EHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 34445555544 4678888888888888887776544444444444443
No 487
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=20.88 E-value=1.1e+02 Score=16.88 Aligned_cols=18 Identities=17% Similarity=0.111 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHHcCCccc
Q 038429 237 EFGIWVSSHIEKNGIKMD 254 (258)
Q Consensus 237 ~~a~~~~~~m~~~g~~p~ 254 (258)
+...++.+-+.+.|+.||
T Consensus 29 ~tr~rI~~~a~~lgY~pN 46 (46)
T PF00356_consen 29 ETRERILEAAEELGYRPN 46 (46)
T ss_dssp HHHHHHHHHHHHHTB-SS
T ss_pred HHHHHHHHHHHHHCCCCC
Confidence 345567777777788776
No 488
>PRK12357 glutaminase; Reviewed
Probab=20.79 E-value=5e+02 Score=21.63 Aligned_cols=23 Identities=9% Similarity=0.106 Sum_probs=16.3
Q ss_pred HHHHHHhHhcCCCCCCcchHHHHHHHh
Q 038429 108 FMIFLQLVYNSPYFPNEFTLPFVIKAA 134 (258)
Q Consensus 108 ~~~~~~m~~~~~~~p~~~~~~~ll~~~ 134 (258)
..+++.+ |..|+...||+++..=
T Consensus 90 ~~V~~~V----G~EPSG~~FNSi~~Le 112 (326)
T PRK12357 90 SYVLERV----DVEPTGDAFNSIIRLE 112 (326)
T ss_pred HHHHHHh----CCCCCCCCcchhhhhh
Confidence 4455444 8899999999986543
No 489
>PF14162 YozD: YozD-like protein
Probab=20.71 E-value=1.8e+02 Score=16.57 Aligned_cols=20 Identities=30% Similarity=0.298 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHcCCCCChh
Q 038429 202 EKAIELYREMEVENVKPDEV 221 (258)
Q Consensus 202 ~~a~~~~~~m~~~~~~p~~~ 221 (258)
+-|.-.|.++.++|+.|+..
T Consensus 12 EIAefFy~eL~kRGyvP~e~ 31 (57)
T PF14162_consen 12 EIAEFFYHELVKRGYVPTEE 31 (57)
T ss_pred HHHHHHHHHHHHccCCCcHH
Confidence 44677889999999999754
No 490
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=20.69 E-value=1.9e+02 Score=25.46 Aligned_cols=75 Identities=12% Similarity=0.059 Sum_probs=32.6
Q ss_pred HHHHHHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhH--HHHHHHHHcCCC
Q 038429 127 LPFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSW--NSMISGFVEGGF 200 (258)
Q Consensus 127 ~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~li~~~~~~g~ 200 (258)
-++=+.+.|-.|+++-++-+.+.- -+|.+-.+.||-++ -.|+.+-|.-+++.=-+++..++ |+.++-|+..|.
T Consensus 117 NStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~-ykGh~~I~qyLle~gADvn~ks~kGNTALH~caEsG~ 195 (615)
T KOG0508|consen 117 NSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIAC-YKGHVDIAQYLLEQGADVNAKSYKGNTALHDCAESGS 195 (615)
T ss_pred CCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeee-ccCchHHHHHHHHhCCCcchhcccCchHHHhhhhccc
Confidence 334455555555555555444333 22222222332222 23455555555554444433332 344555555555
Q ss_pred hH
Q 038429 201 FE 202 (258)
Q Consensus 201 ~~ 202 (258)
++
T Consensus 196 vd 197 (615)
T KOG0508|consen 196 VD 197 (615)
T ss_pred HH
Confidence 43
No 491
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=20.46 E-value=6.4e+02 Score=22.74 Aligned_cols=145 Identities=10% Similarity=-0.004 Sum_probs=80.7
Q ss_pred hhhHHHHHHHhHhcCCCC-CCcchHHHHHHH-hcCcCCcchhhhhhhcc-c--------CchhHHHHHHHHHHhcC----
Q 038429 104 PIQSFMIFLQLVYNSPYF-PNEFTLPFVIKA-AARPVQFRVGQAIHGMF-E--------DDLVISNSLIHFYAVCG---- 168 (258)
Q Consensus 104 ~~~a~~~~~~m~~~~~~~-p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~-~--------~~~~~~~~li~~~~~~g---- 168 (258)
...|...++.. .+.|.. +-...=.+...+ .+...|++.|...++.. + -.....+-+-.+|.+..
T Consensus 228 ~~~a~~~~~~~-a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~ 306 (552)
T KOG1550|consen 228 LSEAFKYYREA-AKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEK 306 (552)
T ss_pred hhHHHHHHHHH-HhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCcc
Confidence 46788888877 544432 211222233334 55667888888887777 2 23334556666666643
Q ss_pred -CHHHHHHHHHhcC---CCChhhHHHHHHHHHc-CCChHHHHHHHHHHHHcCCCCChhhHHHHHHHH--hccCChhHHHH
Q 038429 169 -DLAMAYCVFVMIG---KKDVVSWNSMISGFVE-GGFFEKAIELYREMEVENVKPDEVTMVVVLSAC--AKKRDLEFGIW 241 (258)
Q Consensus 169 -~~~~a~~~~~~m~---~~~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~--~~~g~~~~a~~ 241 (258)
+.+.|..++...- .|+...+-..+.-... ..+...|.++|....+.|.. +..-+..+.-.. .-..+...|..
T Consensus 307 ~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~~A~~ 385 (552)
T KOG1550|consen 307 IDYEKALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLELAFA 385 (552)
T ss_pred ccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHHHHHH
Confidence 6677888886543 3444443333333333 35677888888887777642 222221111111 12346666777
Q ss_pred HHHHHHHcC
Q 038429 242 VSSHIEKNG 250 (258)
Q Consensus 242 ~~~~m~~~g 250 (258)
++.+..+.|
T Consensus 386 ~~k~aA~~g 394 (552)
T KOG1550|consen 386 YYKKAAEKG 394 (552)
T ss_pred HHHHHHHcc
Confidence 777666666
No 492
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=20.44 E-value=3.8e+02 Score=22.90 Aligned_cols=19 Identities=11% Similarity=-0.094 Sum_probs=9.5
Q ss_pred HHhcCCHHHHHHHHHhcCC
Q 038429 164 YAVCGDLAMAYCVFVMIGK 182 (258)
Q Consensus 164 ~~~~g~~~~a~~~~~~m~~ 182 (258)
+.+.+++..|.++|+++.+
T Consensus 140 l~n~~dy~aA~~~~~~L~~ 158 (380)
T TIGR02710 140 AINAFDYLFAHARLETLLR 158 (380)
T ss_pred HHHhcChHHHHHHHHHHHh
Confidence 3344555555555555443
No 493
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=20.35 E-value=6.4e+02 Score=22.69 Aligned_cols=151 Identities=16% Similarity=0.145 Sum_probs=88.0
Q ss_pred CCCChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc---c-CchhHHHH
Q 038429 84 PQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF---E-DDLVISNS 159 (258)
Q Consensus 84 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~---~-~~~~~~~~ 159 (258)
..+....+..|++.+..... ++-.++++++ ... + ...+..++++....|-......+.+.+ + ++...-..
T Consensus 306 ~~~~~~~f~~lv~~lR~~~~-e~l~~l~~~~-~~~---~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~~~ea~~~ 379 (574)
T smart00638 306 QEPAAAKFLRLVRLLRTLSE-EQLEQLWRQL-YEK---K-KKARRIFLDAVAQAGTPPALKFIKQWIKNKKITPLEAAQL 379 (574)
T ss_pred ccchHHHHHHHHHHHHhCCH-HHHHHHHHHH-HhC---C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 33566778888888877654 7778888887 431 1 568899999999999988888888877 2 22222333
Q ss_pred HHHHH--HhcCCHHHHHHHHHhcCCC----C-------hhhHHHHHHHHHcCCCh------HHHHHHHHHHHHcCC-CCC
Q 038429 160 LIHFY--AVCGDLAMAYCVFVMIGKK----D-------VVSWNSMISGFVEGGFF------EKAIELYREMEVENV-KPD 219 (258)
Q Consensus 160 li~~~--~~~g~~~~a~~~~~~m~~~----~-------~~~~~~li~~~~~~g~~------~~a~~~~~~m~~~~~-~p~ 219 (258)
+.... .+.-..+-...+|+.+..| . ..+|.+++.-+|....- ++....+.+...... .-|
T Consensus 380 ~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 459 (574)
T smart00638 380 LAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGD 459 (574)
T ss_pred HHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCC
Confidence 33322 2344555555555544432 2 35777888866665542 344444443322211 112
Q ss_pred hhhHHHHHHHHhccCChhHHH
Q 038429 220 EVTMVVVLSACAKKRDLEFGI 240 (258)
Q Consensus 220 ~~t~~~li~~~~~~g~~~~a~ 240 (258)
..--...|+++...|......
T Consensus 460 ~~~~~~~LkaLGN~g~~~~i~ 480 (574)
T smart00638 460 EEEIQLYLKALGNAGHPSSIK 480 (574)
T ss_pred chheeeHHHhhhccCChhHHH
Confidence 223345577777777655443
No 494
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.31 E-value=5.3e+02 Score=23.74 Aligned_cols=35 Identities=17% Similarity=0.210 Sum_probs=23.0
Q ss_pred ChhhHHHHHHHHhccCChhHHHHHHHHHHHcCCccc
Q 038429 219 DEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254 (258)
Q Consensus 219 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 254 (258)
+......+++++.. |+...+..+++++.+.|..|.
T Consensus 250 ~~~~i~~LldaL~~-~d~~~al~~l~~l~~~G~~~~ 284 (618)
T PRK14951 250 DRSHVFRLIDALAQ-GDGRTVVETADELRLNGLSAA 284 (618)
T ss_pred CHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCHH
Confidence 44445556666555 677777777777777776664
No 495
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=20.25 E-value=3.2e+02 Score=19.17 Aligned_cols=58 Identities=19% Similarity=0.176 Sum_probs=31.4
Q ss_pred chhHHHHHHHHHHhcCCHHHHH-------HHHHhcC---CCChhhHHHHH----HHHHcCCChHHHHHHHHH
Q 038429 153 DLVISNSLIHFYAVCGDLAMAY-------CVFVMIG---KKDVVSWNSMI----SGFVEGGFFEKAIELYRE 210 (258)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~a~-------~~~~~m~---~~~~~~~~~li----~~~~~~g~~~~a~~~~~~ 210 (258)
|...+..|-.++.+.|++++++ ..|++-. +..-..|-..+ .++-..|+.++|+..|+.
T Consensus 54 DA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~ 125 (144)
T PF12968_consen 54 DAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRM 125 (144)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 4455666777777777766544 3454332 22333343332 245567888888887753
No 496
>cd08789 CARD_IPS-1_RIG-I Caspase activation and recruitment domains (CARDs) found in IPS-1 and RIG-I-like RNA helicases. Caspase activation and recruitment domains (CARDs) found in IPS-1 (Interferon beta promoter stimulator protein 1) and Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. RIG-I-like helicases and IPS-1 play important roles in the induction of interferons in response to viral infection. They are crucial in triggering innate immunity and in developing adaptive immunity against viral pathogens. RIG-I-like helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. MDA5 and RIG-I associate with IPS-1 through a CARD-CAR
Probab=20.19 E-value=2.5e+02 Score=17.90 Aligned_cols=38 Identities=13% Similarity=0.039 Sum_probs=16.8
Q ss_pred cCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHH
Q 038429 197 EGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239 (258)
Q Consensus 197 ~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a 239 (258)
..|+.+.|..+++.+. + +| .-|..++.++...|.-+.|
T Consensus 44 ~~G~~~aa~~Ll~~L~-r--~~--~Wf~~Fl~AL~~~~~~~LA 81 (84)
T cd08789 44 NSGNIKAAWTLLDTLV-R--RD--NWLEPFLDALRECGLGHLA 81 (84)
T ss_pred cCChHHHHHHHHHHHh-c--cC--ChHHHHHHHHHHcCCHHHH
Confidence 3445555555555544 1 11 2234445555444444433
No 497
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=20.08 E-value=2e+02 Score=25.38 Aligned_cols=42 Identities=5% Similarity=0.038 Sum_probs=22.9
Q ss_pred HHHHHhhccCcchhhhhhhhhhhhccC-----CCChHHHHHHhccCC
Q 038429 43 HAQMLSTDFFFDPYSASKLFTPCALST-----FSSLEYARKMFDQIP 84 (258)
Q Consensus 43 ~~~m~~~~~~~~~~~~~~li~~~~~~~-----~~~~~~a~~~~~~m~ 84 (258)
.-.|+..++.|...-+-.-+-.|+-.| |..++...+.+++|.
T Consensus 21 ~~rMl~NNLDpeVAe~P~eLVvYGg~G~aarnW~~~~~i~~~L~~l~ 67 (545)
T TIGR01228 21 ALRMLMNNLDPEVAEDPENLVVYGGIGKAARNWEAFDKIVETLKRLE 67 (545)
T ss_pred HHHHHHhCCChhHhcCchheEEecccchhhcCHHHHHHHHHHHHhcC
Confidence 334667777776665555555555544 113445555555554
No 498
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.01 E-value=7.6e+02 Score=23.45 Aligned_cols=144 Identities=8% Similarity=-0.076 Sum_probs=0.0
Q ss_pred hhhhhccCCCChHHHHHHhccCCC--C---ChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcC
Q 038429 62 FTPCALSTFSSLEYARKMFDQIPQ--P---NLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAAR 136 (258)
Q Consensus 62 i~~~~~~~~~~~~~a~~~~~~m~~--~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~ 136 (258)
|+-+.+.+ .+++|..+.+.... + -...+...|..+...|+.++|-...-.| ..-+..-|--.+.-+..
T Consensus 363 i~Wll~~k--~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m-----~gn~~~eWe~~V~~f~e 435 (846)
T KOG2066|consen 363 IDWLLEKK--KYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKM-----LGNNAAEWELWVFKFAE 435 (846)
T ss_pred HHHHHHhh--HHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHH-----hcchHHHHHHHHHHhcc
Q ss_pred cCCcchhhhhhhcc--cCchhHHHHHHHHHHhcCCHHHHHHHHHhcC--------------------CCChhhHHHHHHH
Q 038429 137 PVQFRVGQAIHGMF--EDDLVISNSLIHFYAVCGDLAMAYCVFVMIG--------------------KKDVVSWNSMISG 194 (258)
Q Consensus 137 ~~~~~~a~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--------------------~~~~~~~~~li~~ 194 (258)
.++....-.+.=.- ..+...|..++..|.. .+...-.++..+-. ..+...-..|...
T Consensus 436 ~~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~L 514 (846)
T KOG2066|consen 436 LDQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHL 514 (846)
T ss_pred ccccchhhccCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHH
Q ss_pred HHcCCChHHHHHHHHHHHH
Q 038429 195 FVEGGFFEKAIELYREMEV 213 (258)
Q Consensus 195 ~~~~g~~~~a~~~~~~m~~ 213 (258)
|...+++.+|..++-..+.
T Consensus 515 Yl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 515 YLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHHccChHHHHHHHHhccC
Done!