Query 038429
Match_columns 258
No_of_seqs 231 out of 1786
Neff 10.7
Searched_HMMs 29240
Date Mon Mar 25 19:01:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038429.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038429hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 7.2E-35 2.5E-39 249.4 13.4 195 36-233 6-223 (501)
2 4g26_A Pentatricopeptide repea 100.0 4.4E-34 1.5E-38 244.5 16.2 181 75-256 8-211 (501)
3 2xpi_A Anaphase-promoting comp 99.9 2.6E-21 8.9E-26 169.0 14.6 221 27-254 279-513 (597)
4 2xpi_A Anaphase-promoting comp 99.9 6.7E-21 2.3E-25 166.4 16.1 215 29-248 314-544 (597)
5 3spa_A Mtrpol, DNA-directed RN 99.9 1.3E-21 4.3E-26 174.2 9.4 103 154-256 127-237 (1134)
6 3spa_A Mtrpol, DNA-directed RN 99.8 4.4E-21 1.5E-25 170.8 3.2 124 126-254 129-265 (1134)
7 1w3b_A UDP-N-acetylglucosamine 99.7 8E-16 2.7E-20 127.4 18.0 212 31-248 146-367 (388)
8 1w3b_A UDP-N-acetylglucosamine 99.7 3.1E-15 1.1E-19 123.9 17.2 215 29-249 110-334 (388)
9 2y4t_A DNAJ homolog subfamily 99.6 1.1E-14 3.7E-19 122.6 17.5 214 29-248 35-323 (450)
10 2y4t_A DNAJ homolog subfamily 99.6 1.5E-15 5.2E-20 127.9 12.2 205 39-249 11-240 (450)
11 4eqf_A PEX5-related protein; a 99.6 6.4E-15 2.2E-19 120.9 13.8 218 28-249 73-310 (365)
12 3mkr_A Coatomer subunit epsilo 99.6 3.2E-14 1.1E-18 113.6 17.1 212 33-249 12-229 (291)
13 1b89_A Protein (clathrin heavy 99.6 9.4E-16 3.2E-20 127.1 7.3 182 32-239 15-196 (449)
14 3hym_B Cell division cycle pro 99.6 1.6E-13 5.5E-18 110.4 17.8 216 29-249 31-265 (330)
15 1fch_A Peroxisomal targeting s 99.6 9.4E-14 3.2E-18 113.7 16.2 217 27-249 71-314 (368)
16 3cv0_A Peroxisome targeting si 99.6 2E-13 6.8E-18 109.7 17.1 216 28-249 29-269 (327)
17 1b89_A Protein (clathrin heavy 99.6 1.1E-14 3.9E-19 120.6 9.6 203 15-247 30-234 (449)
18 4eqf_A PEX5-related protein; a 99.5 3.6E-14 1.2E-18 116.4 9.5 215 28-245 107-352 (365)
19 3hym_B Cell division cycle pro 99.5 1.2E-12 4E-17 105.3 16.5 216 29-249 65-299 (330)
20 3uq3_A Heat shock protein STI1 99.5 5E-13 1.7E-17 103.7 13.8 206 29-249 14-236 (258)
21 2gw1_A Mitochondrial precursor 99.5 8.8E-13 3E-17 112.5 16.1 215 29-250 246-479 (514)
22 1fch_A Peroxisomal targeting s 99.5 1.8E-13 6.3E-18 112.0 11.0 215 28-245 106-355 (368)
23 2pl2_A Hypothetical conserved 99.5 8.3E-13 2.8E-17 100.8 12.6 190 52-247 2-212 (217)
24 3cv0_A Peroxisome targeting si 99.5 2.9E-13 9.9E-18 108.7 10.0 214 28-246 63-312 (327)
25 1xnf_A Lipoprotein NLPI; TPR, 99.5 1E-12 3.4E-17 103.1 12.9 218 28-250 13-245 (275)
26 3mkr_A Coatomer subunit epsilo 99.4 4.2E-12 1.4E-16 101.3 16.3 207 29-249 43-264 (291)
27 3ieg_A DNAJ homolog subfamily 99.4 4.3E-12 1.5E-16 103.0 16.6 214 29-250 12-264 (359)
28 2ho1_A Type 4 fimbrial biogene 99.4 3E-12 1E-16 99.3 14.7 191 55-250 37-239 (252)
29 2ho1_A Type 4 fimbrial biogene 99.4 4.7E-12 1.6E-16 98.2 15.7 192 29-226 46-248 (252)
30 2q7f_A YRRB protein; TPR, prot 99.4 8.7E-13 3E-17 101.6 11.2 184 29-248 32-221 (243)
31 2vq2_A PILW, putative fimbrial 99.4 3.8E-12 1.3E-16 96.6 14.6 192 54-249 7-211 (225)
32 2gw1_A Mitochondrial precursor 99.4 2.5E-12 8.5E-17 109.7 13.9 214 32-249 201-444 (514)
33 3ieg_A DNAJ homolog subfamily 99.4 1.4E-11 4.6E-16 100.0 16.8 217 28-249 79-335 (359)
34 2vq2_A PILW, putative fimbrial 99.4 1.1E-11 3.7E-16 94.0 14.7 193 29-227 17-222 (225)
35 3u4t_A TPR repeat-containing p 99.4 1.5E-11 5.1E-16 96.4 15.5 216 29-249 12-250 (272)
36 3fp2_A TPR repeat-containing p 99.4 1.3E-11 4.3E-16 106.1 15.8 215 29-250 252-492 (537)
37 2q7f_A YRRB protein; TPR, prot 99.4 3.2E-12 1.1E-16 98.3 10.8 152 28-214 65-222 (243)
38 3fp2_A TPR repeat-containing p 99.4 2.1E-11 7.1E-16 104.7 16.2 156 90-249 245-407 (537)
39 1ouv_A Conserved hypothetical 99.4 9.7E-11 3.3E-15 92.1 18.6 210 29-250 15-252 (273)
40 2ond_A Cleavage stimulation fa 99.4 1.3E-10 4.5E-15 93.2 19.6 207 37-249 33-270 (308)
41 2pl2_A Hypothetical conserved 99.3 6.4E-11 2.2E-15 90.3 13.6 160 86-249 3-180 (217)
42 2h6f_A Protein farnesyltransfe 99.3 4.4E-11 1.5E-15 99.0 12.9 213 29-248 106-347 (382)
43 1xnf_A Lipoprotein NLPI; TPR, 99.3 3.6E-11 1.2E-15 94.1 11.1 207 26-243 49-269 (275)
44 4abn_A Tetratricopeptide repea 99.3 3E-11 1E-15 102.9 11.4 202 36-245 84-317 (474)
45 3vtx_A MAMA; tetratricopeptide 99.3 3.4E-10 1.1E-14 83.5 15.4 160 87-249 4-170 (184)
46 3u4t_A TPR repeat-containing p 99.3 3.8E-10 1.3E-14 88.2 16.5 190 55-249 3-208 (272)
47 3nf1_A KLC 1, kinesin light ch 99.2 4E-11 1.4E-15 95.5 9.2 219 27-248 34-306 (311)
48 3as5_A MAMA; tetratricopeptide 99.2 4.1E-10 1.4E-14 82.4 13.9 159 56-249 9-173 (186)
49 3vtx_A MAMA; tetratricopeptide 99.2 2.8E-10 9.5E-15 84.0 11.9 162 53-220 3-174 (184)
50 3as5_A MAMA; tetratricopeptide 99.2 1E-09 3.5E-14 80.3 14.6 151 29-214 17-173 (186)
51 1ouv_A Conserved hypothetical 99.2 1.8E-09 6.2E-14 84.8 16.9 188 54-250 5-216 (273)
52 3uq3_A Heat shock protein STI1 99.1 9.7E-10 3.3E-14 84.9 13.5 186 55-250 5-203 (258)
53 3ro2_A PINS homolog, G-protein 99.1 2E-10 6.7E-15 92.1 9.1 218 29-248 14-291 (338)
54 3sf4_A G-protein-signaling mod 99.1 2.9E-10 1E-14 93.9 9.4 218 29-248 18-295 (406)
55 3nf1_A KLC 1, kinesin light ch 99.1 6.8E-11 2.3E-15 94.1 5.2 158 54-213 26-223 (311)
56 4gyw_A UDP-N-acetylglucosamine 99.1 2E-09 6.7E-14 96.0 14.8 155 89-247 10-172 (723)
57 4a1s_A PINS, partner of inscut 99.1 1.7E-10 5.9E-15 95.8 7.4 217 29-248 57-331 (411)
58 3edt_B KLC 2, kinesin light ch 99.1 6.9E-10 2.4E-14 86.8 10.1 215 32-248 13-280 (283)
59 2h6f_A Protein farnesyltransfe 99.0 2.8E-09 9.6E-14 88.1 13.0 186 55-246 97-302 (382)
60 2ond_A Cleavage stimulation fa 99.0 4.1E-09 1.4E-13 84.5 13.5 174 37-214 81-270 (308)
61 2ooe_A Cleavage stimulation fa 99.0 1.6E-08 5.6E-13 87.1 17.5 207 37-249 255-492 (530)
62 4gyw_A UDP-N-acetylglucosamine 99.0 1.4E-09 4.9E-14 96.8 10.8 156 54-213 8-173 (723)
63 3edt_B KLC 2, kinesin light ch 99.0 1.2E-09 4.2E-14 85.4 8.3 185 27-213 50-280 (283)
64 3sf4_A G-protein-signaling mod 99.0 1.2E-09 4.3E-14 90.0 8.7 219 28-248 55-335 (406)
65 2fo7_A Synthetic consensus TPR 99.0 1.1E-08 3.7E-13 70.5 11.8 127 90-249 3-132 (136)
66 3ro2_A PINS homolog, G-protein 99.0 9.8E-10 3.4E-14 87.9 7.2 220 28-249 51-332 (338)
67 4a1s_A PINS, partner of inscut 99.0 5.4E-10 1.8E-14 92.8 5.8 218 29-248 95-371 (411)
68 3ulq_A Response regulator aspa 99.0 3.9E-09 1.3E-13 87.1 11.0 215 29-248 112-367 (383)
69 4abn_A Tetratricopeptide repea 98.9 1.3E-09 4.6E-14 92.8 7.6 178 28-210 110-317 (474)
70 4i17_A Hypothetical protein; T 98.9 1.4E-08 4.8E-13 77.4 12.6 184 54-249 6-209 (228)
71 2fo7_A Synthetic consensus TPR 98.9 1.2E-08 4.1E-13 70.3 9.9 125 56-214 2-132 (136)
72 2xm6_A Protein corresponding t 98.9 2.7E-07 9.1E-12 78.7 19.4 138 33-179 56-212 (490)
73 2xm6_A Protein corresponding t 98.9 2.5E-07 8.6E-12 78.9 18.3 206 33-250 92-326 (490)
74 1xi4_A Clathrin heavy chain; a 98.8 2.8E-07 9.6E-12 85.8 18.7 180 54-247 1104-1307(1630)
75 3q15_A PSP28, response regulat 98.8 1.8E-08 6.1E-13 83.0 9.9 215 29-248 110-364 (378)
76 1xi4_A Clathrin heavy chain; a 98.8 2.4E-07 8.1E-12 86.3 17.1 187 29-246 1058-1247(1630)
77 4i17_A Hypothetical protein; T 98.8 9.1E-08 3.1E-12 72.9 12.3 183 29-223 16-216 (228)
78 1hz4_A MALT regulatory protein 98.8 1.9E-07 6.6E-12 76.5 14.4 215 31-247 25-280 (373)
79 3u3w_A Transcriptional activat 98.7 1.7E-06 5.8E-11 68.6 18.1 198 43-247 34-264 (293)
80 1hz4_A MALT regulatory protein 98.7 5.5E-07 1.9E-11 73.7 15.5 218 29-248 62-321 (373)
81 1qqe_A Vesicular transport pro 98.7 5.5E-08 1.9E-12 77.3 8.9 186 58-247 40-267 (292)
82 2ooe_A Cleavage stimulation fa 98.7 2E-07 6.7E-12 80.4 12.6 177 33-214 292-492 (530)
83 3qky_A Outer membrane assembly 98.7 3.2E-07 1.1E-11 71.4 12.8 159 89-249 16-224 (261)
84 3ulq_A Response regulator aspa 98.7 1.9E-07 6.4E-12 76.9 11.9 184 61-246 109-332 (383)
85 2pzi_A Probable serine/threoni 98.7 1.2E-07 4.2E-12 84.3 10.9 164 31-200 402-583 (681)
86 3qou_A Protein YBBN; thioredox 98.7 4.9E-07 1.7E-11 71.7 13.0 172 72-247 101-282 (287)
87 2qfc_A PLCR protein; TPR, HTH, 98.7 5.3E-07 1.8E-11 71.5 13.2 160 88-247 75-264 (293)
88 3qky_A Outer membrane assembly 98.6 1.7E-07 5.7E-12 73.0 10.1 163 54-220 14-228 (261)
89 2ifu_A Gamma-SNAP; membrane fu 98.6 1.8E-07 6E-12 74.9 10.4 204 33-243 4-255 (307)
90 3mv2_B Coatomer subunit epsilo 98.6 4.5E-07 1.6E-11 72.1 12.2 161 86-249 98-282 (310)
91 2yhc_A BAMD, UPF0169 lipoprote 98.6 8.2E-07 2.8E-11 67.6 13.2 180 55-250 4-214 (225)
92 2r5s_A Uncharacterized protein 98.6 2.4E-07 8.3E-12 67.7 9.7 156 58-247 9-171 (176)
93 1qqe_A Vesicular transport pro 98.6 2.3E-07 7.8E-12 73.7 10.0 194 38-248 3-227 (292)
94 3mv2_B Coatomer subunit epsilo 98.6 1.7E-07 6E-12 74.5 9.1 172 39-220 85-286 (310)
95 2r5s_A Uncharacterized protein 98.6 3.9E-07 1.3E-11 66.6 10.4 150 28-212 14-171 (176)
96 3e4b_A ALGK; tetratricopeptide 98.6 1.7E-06 5.9E-11 73.1 15.7 209 29-250 12-281 (452)
97 1hh8_A P67PHOX, NCF-2, neutrop 98.6 5.3E-07 1.8E-11 67.6 11.4 89 58-150 9-97 (213)
98 3rjv_A Putative SEL1 repeat pr 98.6 1.5E-06 5E-11 65.7 13.6 158 87-251 17-199 (212)
99 2vsy_A XCC0866; transferase, g 98.6 3.7E-07 1.3E-11 79.3 11.4 142 72-215 4-158 (568)
100 4g1t_A Interferon-induced prot 98.6 2E-06 6.8E-11 72.5 15.6 84 29-114 60-164 (472)
101 4g1t_A Interferon-induced prot 98.6 4.6E-07 1.6E-11 76.5 11.2 177 72-250 228-460 (472)
102 2vsy_A XCC0866; transferase, g 98.5 4.9E-07 1.7E-11 78.5 11.2 154 33-191 2-168 (568)
103 3q15_A PSP28, response regulat 98.5 1.2E-06 4.2E-11 71.9 12.5 181 63-245 109-328 (378)
104 3qou_A Protein YBBN; thioredox 98.5 4.8E-07 1.6E-11 71.7 9.5 156 52-212 114-282 (287)
105 2yhc_A BAMD, UPF0169 lipoprote 98.5 1.3E-06 4.5E-11 66.5 11.5 169 29-215 13-214 (225)
106 1hh8_A P67PHOX, NCF-2, neutrop 98.5 2.3E-06 7.9E-11 64.1 12.3 86 90-180 8-97 (213)
107 2pzi_A Probable serine/threoni 98.5 2.7E-07 9.1E-12 82.1 7.6 163 66-235 402-583 (681)
108 3urz_A Uncharacterized protein 98.5 5.7E-07 1.9E-11 67.7 8.0 159 60-224 9-194 (208)
109 3urz_A Uncharacterized protein 98.4 1.8E-06 6.1E-11 64.9 10.3 52 61-114 60-114 (208)
110 2ifu_A Gamma-SNAP; membrane fu 98.4 2.9E-06 9.8E-11 67.8 11.5 149 30-181 46-222 (307)
111 3rjv_A Putative SEL1 repeat pr 98.4 6.4E-06 2.2E-10 62.1 12.5 170 37-216 3-199 (212)
112 4ga2_A E3 SUMO-protein ligase 98.4 5.1E-07 1.7E-11 64.3 5.6 103 130-234 37-148 (150)
113 3gyz_A Chaperone protein IPGC; 98.4 3E-06 1E-10 60.4 9.4 119 127-250 12-134 (151)
114 3gw4_A Uncharacterized protein 98.3 2.2E-06 7.4E-11 63.5 8.9 147 72-247 7-174 (203)
115 4ga2_A E3 SUMO-protein ligase 98.3 1.1E-06 3.8E-11 62.5 6.8 135 29-168 6-148 (150)
116 1a17_A Serine/threonine protei 98.3 6.5E-06 2.2E-10 58.7 10.4 126 89-247 14-144 (166)
117 2e2e_A Formate-dependent nitri 98.3 8.5E-06 2.9E-10 59.2 10.9 112 100-213 22-143 (177)
118 3u3w_A Transcriptional activat 98.3 1.4E-05 4.6E-10 63.3 12.8 152 60-213 80-265 (293)
119 1na0_A Designed protein CTPR3; 98.3 1E-05 3.6E-10 54.4 10.5 93 155-248 10-105 (125)
120 1na0_A Designed protein CTPR3; 98.3 8.2E-06 2.8E-10 54.9 9.5 95 88-214 9-106 (125)
121 4f3v_A ESX-1 secretion system 98.2 2.1E-06 7E-11 67.4 6.8 175 72-249 21-237 (282)
122 1a17_A Serine/threonine protei 98.2 6.1E-06 2.1E-10 58.9 9.0 123 55-211 13-143 (166)
123 4e6h_A MRNA 3'-END-processing 98.2 2.9E-05 1E-09 68.7 14.8 210 36-249 325-570 (679)
124 3gw4_A Uncharacterized protein 98.2 3.1E-06 1.1E-10 62.6 7.6 155 31-213 3-175 (203)
125 2kck_A TPR repeat; tetratricop 98.2 2E-05 6.7E-10 52.0 10.8 97 153-250 5-107 (112)
126 2vgx_A Chaperone SYCD; alterna 98.2 8.1E-06 2.8E-10 57.8 9.2 93 154-247 21-116 (148)
127 3e4b_A ALGK; tetratricopeptide 98.2 1.2E-05 4.2E-10 67.8 11.2 168 77-251 165-353 (452)
128 4gco_A Protein STI-1; structur 98.2 1.7E-05 5.8E-10 54.5 9.9 94 155-249 14-110 (126)
129 2qfc_A PLCR protein; TPR, HTH, 98.2 8.1E-06 2.8E-10 64.6 9.3 154 57-212 77-264 (293)
130 3gyz_A Chaperone protein IPGC; 98.2 8.8E-06 3E-10 58.0 8.3 96 87-214 35-133 (151)
131 2vyi_A SGTA protein; chaperone 98.2 1.7E-05 5.8E-10 53.8 9.3 116 88-236 12-130 (131)
132 2lni_A Stress-induced-phosphop 98.2 9.3E-06 3.2E-10 55.5 8.0 28 87-114 15-42 (133)
133 4gco_A Protein STI-1; structur 98.1 1.8E-05 6.2E-10 54.3 9.2 99 89-221 14-115 (126)
134 2c2l_A CHIP, carboxy terminus 98.1 1.8E-06 6.1E-11 68.2 4.5 186 55-248 4-198 (281)
135 2lni_A Stress-induced-phosphop 98.1 3.4E-05 1.2E-09 52.6 10.5 93 155-248 17-112 (133)
136 2e2e_A Formate-dependent nitri 98.1 6.7E-06 2.3E-10 59.7 7.0 114 135-249 21-144 (177)
137 4b4t_Q 26S proteasome regulato 98.1 3.3E-05 1.1E-09 64.2 12.0 157 91-247 58-243 (434)
138 1p5q_A FKBP52, FK506-binding p 98.1 1E-05 3.4E-10 65.6 8.0 155 72-246 128-291 (336)
139 4gcn_A Protein STI-1; structur 98.1 1.6E-05 5.6E-10 54.6 7.9 96 155-250 9-113 (127)
140 2xcb_A PCRH, regulatory protei 98.0 4.2E-05 1.4E-09 53.5 9.7 91 156-247 20-113 (142)
141 3upv_A Heat shock protein STI1 98.0 5.9E-05 2E-09 51.3 10.2 95 154-249 4-101 (126)
142 3q49_B STIP1 homology and U bo 98.0 8.5E-05 2.9E-09 51.1 11.0 93 154-247 9-104 (137)
143 3dra_A Protein farnesyltransfe 98.0 0.00023 7.9E-09 56.7 14.7 210 36-248 49-286 (306)
144 2fbn_A 70 kDa peptidylprolyl i 98.0 4.2E-06 1.4E-10 62.1 4.2 167 62-248 11-185 (198)
145 1p5q_A FKBP52, FK506-binding p 98.0 3E-05 1E-09 62.7 9.6 111 136-249 125-259 (336)
146 2vyi_A SGTA protein; chaperone 98.0 6.2E-05 2.1E-09 50.9 9.8 97 152-249 10-109 (131)
147 3sz7_A HSC70 cochaperone (SGT) 98.0 6.5E-05 2.2E-09 53.8 10.2 91 124-214 11-108 (164)
148 2dba_A Smooth muscle cell asso 98.0 0.00012 4.2E-09 50.8 11.4 97 152-249 26-128 (148)
149 1elw_A TPR1-domain of HOP; HOP 98.0 7.3E-05 2.5E-09 49.5 9.8 95 154-249 4-101 (118)
150 4f3v_A ESX-1 secretion system 98.0 1.5E-05 5.1E-10 62.6 7.1 187 32-226 18-247 (282)
151 2kck_A TPR repeat; tetratricop 98.0 3.7E-05 1.3E-09 50.6 7.9 96 87-214 5-106 (112)
152 4e6h_A MRNA 3'-END-processing 97.9 0.00011 3.6E-09 65.2 12.3 195 31-232 354-586 (679)
153 1elr_A TPR2A-domain of HOP; HO 97.9 3.3E-05 1.1E-09 52.4 7.2 60 155-214 39-108 (131)
154 2fbn_A 70 kDa peptidylprolyl i 97.9 8E-05 2.8E-09 55.1 9.8 119 130-249 10-151 (198)
155 1elr_A TPR2A-domain of HOP; HO 97.9 6.4E-05 2.2E-09 50.9 8.6 97 154-250 4-109 (131)
156 2vgx_A Chaperone SYCD; alterna 97.9 4.9E-05 1.7E-09 53.7 7.6 61 153-213 54-117 (148)
157 4b4t_Q 26S proteasome regulato 97.9 8.4E-05 2.9E-09 61.7 9.8 154 95-248 11-203 (434)
158 3ro3_A PINS homolog, G-protein 97.8 4.9E-05 1.7E-09 53.4 7.2 134 89-248 10-157 (164)
159 3upv_A Heat shock protein STI1 97.8 5.7E-05 2E-09 51.4 7.3 94 89-214 5-101 (126)
160 3ro3_A PINS homolog, G-protein 97.8 2.3E-05 7.7E-10 55.2 5.4 131 55-213 9-157 (164)
161 3q49_B STIP1 homology and U bo 97.8 7.9E-05 2.7E-09 51.3 8.0 96 86-213 7-105 (137)
162 1elw_A TPR1-domain of HOP; HOP 97.8 0.00015 5.1E-09 48.0 9.0 95 88-214 4-101 (118)
163 2xcb_A PCRH, regulatory protei 97.8 7.4E-05 2.5E-09 52.2 7.6 93 89-213 19-114 (142)
164 2xev_A YBGF; tetratricopeptide 97.8 0.00032 1.1E-08 47.6 10.5 88 160-249 8-105 (129)
165 4gcn_A Protein STI-1; structur 97.8 0.0001 3.5E-09 50.5 7.9 102 89-224 9-120 (127)
166 1hxi_A PEX5, peroxisome target 97.8 0.00014 4.7E-09 49.5 8.4 92 156-249 19-114 (121)
167 1wao_1 Serine/threonine protei 97.8 5.8E-05 2E-09 64.2 7.5 119 25-148 11-134 (477)
168 1wao_1 Serine/threonine protei 97.8 4E-05 1.4E-09 65.1 6.4 119 56-178 7-134 (477)
169 3sz7_A HSC70 cochaperone (SGT) 97.7 0.00018 6E-09 51.5 8.7 94 87-182 10-107 (164)
170 3n71_A Histone lysine methyltr 97.7 4.3E-05 1.5E-09 65.0 6.0 115 134-248 319-463 (490)
171 2dba_A Smooth muscle cell asso 97.7 0.00036 1.2E-08 48.3 10.0 100 86-214 26-128 (148)
172 3dra_A Protein farnesyltransfe 97.7 0.0021 7.2E-08 51.2 14.5 175 35-214 84-287 (306)
173 3n71_A Histone lysine methyltr 97.6 8.9E-05 3E-09 63.1 6.4 119 96-214 317-464 (490)
174 1kt0_A FKBP51, 51 kDa FK506-bi 97.6 0.0002 6.7E-09 60.5 8.5 118 87-204 267-404 (457)
175 3k9i_A BH0479 protein; putativ 97.6 3.3E-05 1.1E-09 52.1 2.9 102 32-135 2-108 (117)
176 1hxi_A PEX5, peroxisome target 97.6 0.00023 7.8E-09 48.3 7.0 59 154-212 51-112 (121)
177 2c2l_A CHIP, carboxy terminus 97.6 0.0008 2.7E-08 52.8 10.8 92 123-214 3-101 (281)
178 2xev_A YBGF; tetratricopeptide 97.5 0.00067 2.3E-08 45.9 9.0 95 91-214 5-105 (129)
179 3q7a_A Farnesyltransferase alp 97.5 0.0015 5E-08 52.9 12.1 210 35-248 69-330 (349)
180 3k9i_A BH0479 protein; putativ 97.4 8E-05 2.7E-09 50.1 2.8 61 154-214 27-90 (117)
181 1kt0_A FKBP51, 51 kDa FK506-bi 97.4 0.00065 2.2E-08 57.4 8.7 121 124-246 268-412 (457)
182 2if4_A ATFKBP42; FKBP-like, al 97.4 0.00051 1.7E-08 55.6 7.7 144 88-248 179-327 (338)
183 3rkv_A Putative peptidylprolyl 97.3 0.0013 4.5E-08 46.7 8.9 88 126-213 13-125 (162)
184 2hr2_A Hypothetical protein; a 97.3 0.0017 5.8E-08 46.2 9.0 94 155-248 12-130 (159)
185 2if4_A ATFKBP42; FKBP-like, al 97.2 0.0007 2.4E-08 54.7 6.7 94 154-248 179-292 (338)
186 2l6j_A TPR repeat-containing p 97.2 0.00097 3.3E-08 43.6 6.3 89 153-243 3-101 (111)
187 1ihg_A Cyclophilin 40; ppiase 97.1 0.00094 3.2E-08 54.7 6.5 115 91-205 226-361 (370)
188 1ihg_A Cyclophilin 40; ppiase 97.1 0.0023 7.9E-08 52.4 8.6 112 127-240 226-361 (370)
189 3dss_A Geranylgeranyl transfer 97.1 0.019 6.5E-07 46.1 13.7 212 32-249 41-304 (331)
190 3mkq_A Coatomer beta'-subunit; 97.0 0.0047 1.6E-07 55.5 11.0 150 67-245 611-761 (814)
191 3ma5_A Tetratricopeptide repea 97.0 0.0049 1.7E-07 39.9 8.1 62 152-213 5-69 (100)
192 3rkv_A Putative peptidylprolyl 96.9 0.0037 1.3E-07 44.3 7.8 95 88-182 11-125 (162)
193 3ma5_A Tetratricopeptide repea 96.9 0.0026 8.8E-08 41.2 6.1 63 184-247 6-68 (100)
194 1na3_A Designed protein CTPR2; 96.8 0.0075 2.6E-07 37.6 7.8 76 154-231 9-88 (91)
195 2l6j_A TPR repeat-containing p 96.8 0.0015 5.1E-08 42.7 4.4 92 54-150 3-104 (111)
196 3qww_A SET and MYND domain-con 96.8 0.0014 4.7E-08 54.9 4.9 60 187-246 342-408 (433)
197 2kat_A Uncharacterized protein 96.8 0.0045 1.5E-07 41.0 6.7 62 152-213 17-81 (115)
198 1klx_A Cysteine rich protein B 96.8 0.0046 1.6E-07 42.8 6.8 64 184-250 56-127 (138)
199 1klx_A Cysteine rich protein B 96.7 0.017 5.9E-07 39.8 9.7 109 102-216 9-128 (138)
200 2kat_A Uncharacterized protein 96.7 0.0055 1.9E-07 40.5 6.9 76 172-248 3-81 (115)
201 3mkq_A Coatomer beta'-subunit; 96.7 0.0071 2.4E-07 54.3 9.2 129 59-209 633-773 (814)
202 3qwp_A SET and MYND domain-con 96.7 0.0053 1.8E-07 51.3 7.7 87 161-247 294-398 (429)
203 2hr2_A Hypothetical protein; a 96.6 0.0088 3E-07 42.5 7.5 105 89-213 12-130 (159)
204 1wy6_A Hypothetical protein ST 96.6 0.071 2.4E-06 36.6 11.1 83 168-252 75-157 (172)
205 3q7a_A Farnesyltransferase alp 96.5 0.13 4.4E-06 41.6 14.6 177 35-214 104-331 (349)
206 3qwp_A SET and MYND domain-con 96.5 0.0023 7.8E-08 53.5 4.5 83 131-213 294-399 (429)
207 3qww_A SET and MYND domain-con 96.5 0.0043 1.5E-07 51.9 6.0 80 135-214 309-411 (433)
208 2uy1_A Cleavage stimulation fa 96.4 0.037 1.3E-06 47.1 11.6 119 90-213 288-412 (493)
209 1na3_A Designed protein CTPR2; 96.4 0.0076 2.6E-07 37.6 5.7 25 90-114 11-35 (91)
210 2uy1_A Cleavage stimulation fa 96.0 0.027 9.2E-07 47.9 8.8 198 36-247 195-411 (493)
211 3dss_A Geranylgeranyl transfer 95.9 0.094 3.2E-06 42.1 10.7 175 36-214 90-304 (331)
212 1dce_A Protein (RAB geranylger 95.8 0.049 1.7E-06 47.2 9.6 130 104-237 89-243 (567)
213 1dce_A Protein (RAB geranylger 95.8 0.15 5.1E-06 44.2 12.6 42 73-114 89-135 (567)
214 1zu2_A Mitochondrial import re 95.8 0.0061 2.1E-07 43.3 3.0 73 170-250 62-148 (158)
215 3ly7_A Transcriptional activat 95.4 0.27 9.1E-06 40.0 11.7 134 86-224 192-347 (372)
216 1zu2_A Mitochondrial import re 95.2 0.027 9.1E-07 40.0 4.7 106 102-215 16-148 (158)
217 3ly7_A Transcriptional activat 94.9 0.52 1.8E-05 38.3 12.0 129 120-250 190-340 (372)
218 2kc7_A BFR218_protein; tetratr 94.7 0.11 3.7E-06 32.8 6.5 55 160-214 6-64 (99)
219 3mkq_B Coatomer subunit alpha; 94.7 0.59 2E-05 33.6 10.6 130 95-246 12-141 (177)
220 2kc7_A BFR218_protein; tetratr 94.5 0.13 4.6E-06 32.4 6.5 58 191-250 6-65 (99)
221 3bee_A Putative YFRE protein; 93.5 0.46 1.6E-05 30.1 7.5 62 153-214 5-72 (93)
222 3ltm_A Alpha-REP4; protein eng 93.5 1.6 5.4E-05 31.9 16.9 171 52-233 30-201 (211)
223 1wy6_A Hypothetical protein ST 93.4 1.3 4.5E-05 30.5 10.5 132 72-217 22-157 (172)
224 2v5f_A Prolyl 4-hydroxylase su 92.9 0.69 2.4E-05 29.7 7.8 66 153-220 4-79 (104)
225 3mkq_B Coatomer subunit alpha; 92.8 0.98 3.3E-05 32.5 8.8 127 65-211 15-141 (177)
226 2ff4_A Probable regulatory pro 92.6 0.62 2.1E-05 38.2 8.7 54 192-246 178-231 (388)
227 3bee_A Putative YFRE protein; 92.4 0.42 1.4E-05 30.3 6.0 66 52-118 3-72 (93)
228 3lvg_A Clathrin heavy chain 1; 92.0 0.028 9.7E-07 47.3 0.0 142 54-204 53-218 (624)
229 3ltm_A Alpha-REP4; protein eng 90.9 3.5 0.00012 30.0 15.0 167 72-248 17-184 (211)
230 2ff4_A Probable regulatory pro 90.3 0.92 3.2E-05 37.2 7.5 71 156-226 173-251 (388)
231 3u64_A Protein TP_0956; tetrat 90.2 1.7 5.6E-05 34.1 8.3 62 187-250 201-270 (301)
232 3ltj_A Alpharep-4; protein eng 90.1 4 0.00014 29.4 17.3 169 52-231 25-194 (201)
233 2v5f_A Prolyl 4-hydroxylase su 90.0 1.1 3.6E-05 28.8 6.2 60 189-248 9-74 (104)
234 1pc2_A Mitochondria fission pr 89.5 1.2 4.2E-05 31.1 6.5 62 152-213 30-99 (152)
235 1v54_E Cytochrome C oxidase po 89.1 2.2 7.4E-05 27.5 6.7 31 183-213 43-73 (109)
236 2p58_C Putative type III secre 88.4 2.7 9.1E-05 27.1 6.7 81 139-223 22-106 (116)
237 3kea_A K1L; tropism, ANK repea 88.2 5.2 0.00018 30.8 10.2 18 63-82 36-53 (285)
238 2uwj_G Type III export protein 87.7 2.6 8.7E-05 27.1 6.3 81 139-223 21-105 (115)
239 1pc2_A Mitochondria fission pr 87.5 1.6 5.6E-05 30.5 6.0 61 122-182 30-99 (152)
240 3u64_A Protein TP_0956; tetrat 87.4 1.6 5.5E-05 34.2 6.5 83 142-224 181-281 (301)
241 4fhn_B Nucleoporin NUP120; pro 85.7 12 0.00043 35.2 12.7 121 129-249 817-967 (1139)
242 4h7y_A Dual specificity protei 85.3 7.6 0.00026 27.1 8.3 54 199-253 74-127 (161)
243 3ltj_A Alpharep-4; protein eng 84.6 9.1 0.00031 27.4 15.4 167 72-248 12-179 (201)
244 1v54_E Cytochrome C oxidase po 84.1 2.9 9.9E-05 26.9 5.3 10 168-177 59-68 (109)
245 3lvg_A Clathrin heavy chain 1; 83.5 0.37 1.3E-05 40.8 1.3 176 53-245 81-316 (624)
246 2y69_E Cytochrome C oxidase su 82.9 6 0.0002 27.0 6.7 45 183-228 86-130 (152)
247 2ion_A PDCD4, programmed cell 82.0 8 0.00027 26.9 7.6 63 157-219 12-79 (152)
248 4b4t_P 26S proteasome regulato 81.7 4.9 0.00017 33.5 7.5 92 156-247 139-245 (445)
249 4gns_B Protein CSD3, chitin bi 81.6 4.1 0.00014 36.5 7.3 50 162-211 345-397 (754)
250 2nsz_A Programmed cell death p 81.6 9.7 0.00033 25.6 8.9 91 156-246 9-108 (129)
251 4fhn_B Nucleoporin NUP120; pro 78.7 23 0.00077 33.5 11.7 162 60-238 817-989 (1139)
252 1wdy_A 2-5A-dependent ribonucl 78.1 8.9 0.0003 28.9 7.6 208 31-255 13-248 (285)
253 3esl_A Checkpoint serine/threo 77.5 18 0.00063 26.4 8.9 55 199-253 93-148 (202)
254 3eu9_A Huntingtin-interacting 77.5 8.4 0.00029 28.1 7.1 205 30-250 16-237 (240)
255 4gns_B Protein CSD3, chitin bi 76.0 11 0.00039 33.7 8.3 120 60-181 253-398 (754)
256 2y69_E Cytochrome C oxidase su 75.7 7 0.00024 26.7 5.3 33 118-150 82-114 (152)
257 1nzn_A CGI-135 protein, fissio 74.8 8.6 0.0003 25.8 5.7 64 184-248 34-102 (126)
258 3kea_A K1L; tropism, ANK repea 74.7 10 0.00035 29.1 7.1 192 32-244 40-242 (285)
259 1k1a_A B-cell lymphoma 3-encod 73.7 23 0.0008 25.8 9.0 80 30-112 16-100 (241)
260 2wpv_A GET4, UPF0363 protein Y 73.6 31 0.0011 27.2 15.4 164 55-247 33-215 (312)
261 3txn_A 26S proteasome regulato 72.1 39 0.0013 27.6 10.1 26 57-84 21-46 (394)
262 4b4t_P 26S proteasome regulato 72.0 19 0.00064 30.0 8.4 173 34-211 30-244 (445)
263 3hra_A Ankyrin repeat family p 70.3 25 0.00087 24.7 9.0 167 65-240 12-195 (201)
264 2uwj_G Type III export protein 70.2 19 0.00064 23.2 8.0 77 36-119 22-98 (115)
265 2p58_C Putative type III secre 69.2 20 0.00068 23.1 7.6 77 36-119 23-99 (116)
266 3ffl_A Anaphase-promoting comp 68.9 15 0.00052 26.0 6.0 123 49-181 12-149 (167)
267 3txn_A 26S proteasome regulato 68.8 31 0.0011 28.2 8.8 85 29-114 28-125 (394)
268 3lpz_A GET4 (YOR164C homolog); 68.5 43 0.0015 26.7 15.2 184 35-247 11-214 (336)
269 2wvi_A Mitotic checkpoint seri 68.0 29 0.00099 24.5 7.6 51 203-253 78-129 (164)
270 1k1a_A B-cell lymphoma 3-encod 66.9 29 0.001 25.2 7.9 179 60-255 11-211 (241)
271 4aez_C MAD3, mitotic spindle c 66.2 35 0.0012 25.4 7.8 52 202-253 131-183 (223)
272 4b4t_R RPN7, 26S proteasome re 65.5 11 0.00037 31.2 5.6 90 90-180 133-234 (429)
273 1nzn_A CGI-135 protein, fissio 65.2 19 0.00064 24.2 5.7 60 122-181 33-101 (126)
274 4a1g_A Mitotic checkpoint seri 63.8 34 0.0012 23.8 8.3 52 202-253 82-134 (152)
275 3eiq_C Programmed cell death p 63.8 39 0.0013 27.2 8.3 92 156-247 219-319 (358)
276 1wdy_A 2-5A-dependent ribonucl 63.7 43 0.0015 24.9 9.8 196 41-255 53-281 (285)
277 2zu6_B Programmed cell death p 62.2 42 0.0014 26.3 8.1 67 156-222 168-239 (307)
278 4b4t_R RPN7, 26S proteasome re 61.8 17 0.00059 30.0 6.2 54 126-179 133-193 (429)
279 3t8k_A Uncharacterized protein 61.0 40 0.0014 23.8 7.4 18 205-222 94-111 (186)
280 3b7b_A Euchromatic histone-lys 60.7 45 0.0015 24.1 8.0 201 31-249 19-236 (237)
281 1y1x_A Leishmania major homolo 60.3 35 0.0012 24.1 7.0 74 36-114 26-102 (191)
282 3ygs_P Procaspase 9; apoptosis 58.3 20 0.00069 22.6 4.7 39 168-206 51-89 (97)
283 3aji_A 26S proteasome non-ATPa 57.7 50 0.0017 23.7 8.6 51 30-83 13-63 (231)
284 2dod_A Transcription elongatio 56.5 17 0.0006 22.2 4.0 38 103-141 15-52 (82)
285 1y8m_A FIS1; mitochondria, unk 56.0 33 0.0011 23.5 5.7 23 191-213 83-105 (144)
286 3ljn_A Hypothetical protein; a 55.9 33 0.0011 27.0 6.8 200 31-245 28-266 (364)
287 4h7y_A Dual specificity protei 53.7 54 0.0018 22.9 8.0 30 85-114 10-45 (161)
288 3hra_A Ankyrin repeat family p 52.4 56 0.0019 22.8 7.1 149 96-255 10-173 (201)
289 1oyz_A Hypothetical protein YI 52.2 72 0.0025 23.9 13.7 120 122-248 140-262 (280)
290 1s6c_A KV4 potassium channel-i 52.0 55 0.0019 22.6 7.3 24 221-244 157-180 (183)
291 3o48_A Mitochondria fission 1 52.0 20 0.00067 24.4 4.0 44 202-247 60-105 (134)
292 2d2s_A Exocyst complex compone 51.2 29 0.001 26.0 5.3 88 93-180 23-117 (235)
293 3twr_A Tankyrase-2; ankyrin re 50.7 49 0.0017 22.3 6.3 15 164-178 82-96 (165)
294 2keb_A DNA polymerase subunit 50.5 44 0.0015 21.2 5.1 51 202-254 26-81 (101)
295 1uzc_A Hypothetical protein FL 50.1 25 0.00085 20.8 3.8 38 103-141 13-50 (71)
296 2fe3_A Peroxide operon regulat 49.6 48 0.0016 22.5 5.9 47 190-236 26-72 (145)
297 2yru_A Steroid receptor RNA ac 49.0 55 0.0019 21.6 6.9 43 207-249 48-90 (118)
298 3ygs_P Procaspase 9; apoptosis 48.0 20 0.00067 22.7 3.4 63 41-107 25-87 (97)
299 2nsz_A Programmed cell death p 47.2 46 0.0016 22.2 5.3 65 187-252 9-75 (129)
300 1n11_A Ankyrin; clathrin, BAND 44.8 87 0.003 25.3 7.8 47 32-84 23-71 (437)
301 1zbp_A Hypothetical protein VP 43.9 25 0.00084 27.1 3.9 31 151-181 28-58 (273)
302 4b4t_S RPN3, 26S proteasome re 43.9 1.5E+02 0.0052 25.2 9.3 56 57-114 233-296 (523)
303 2o03_A Probable zinc uptake re 42.9 36 0.0012 22.7 4.3 18 163-180 19-36 (131)
304 2b7e_A PRE-mRNA processing pro 42.5 28 0.00097 19.8 3.1 46 201-246 2-55 (59)
305 2fe3_A Peroxide operon regulat 42.2 52 0.0018 22.3 5.1 48 91-139 24-71 (145)
306 2jul_A Calsenilin; EF-hand, ca 41.9 1E+02 0.0036 22.8 9.7 76 169-246 163-255 (256)
307 3mwm_A ZUR, putative metal upt 41.7 31 0.0011 23.3 3.9 7 248-254 114-120 (139)
308 2rfa_A Transient receptor pote 41.6 95 0.0032 22.2 7.8 86 159-246 123-220 (232)
309 4ets_A Ferric uptake regulatio 41.6 67 0.0023 22.3 5.7 46 190-235 37-84 (162)
310 2xig_A Ferric uptake regulatio 41.5 82 0.0028 21.5 6.2 46 190-235 31-76 (150)
311 3l6a_A Eukaryotic translation 41.4 1.2E+02 0.0042 24.4 7.9 28 157-184 15-42 (364)
312 2o03_A Probable zinc uptake re 40.4 37 0.0013 22.6 4.1 49 92-141 14-62 (131)
313 1bd8_A P19INK4D CDK4/6 inhibit 40.2 57 0.0019 21.7 5.2 19 62-82 6-24 (156)
314 1zbp_A Hypothetical protein VP 39.7 1.2E+02 0.0042 23.3 7.2 68 162-229 5-77 (273)
315 3mwm_A ZUR, putative metal upt 39.2 31 0.0011 23.3 3.6 49 92-141 17-65 (139)
316 4gq2_M Nucleoporin NUP120; bet 39.2 2.4E+02 0.008 26.1 11.4 52 130-181 816-867 (950)
317 2p1h_A APAF-1, apoptotic prote 39.1 67 0.0023 19.8 6.0 63 39-107 24-86 (94)
318 4ady_A RPN2, 26S proteasome re 39.0 2.3E+02 0.008 26.3 9.9 157 67-230 500-671 (963)
319 2znd_A Programmed cell death p 38.9 50 0.0017 22.6 4.8 41 171-214 110-152 (172)
320 1ug3_A EIF4GI, eukaryotic prot 38.1 1.3E+02 0.0045 23.8 7.6 23 128-150 15-37 (339)
321 2ion_A PDCD4, programmed cell 37.3 43 0.0015 23.1 4.1 65 187-252 11-77 (152)
322 2xig_A Ferric uptake regulatio 37.0 54 0.0019 22.4 4.6 50 89-139 27-76 (150)
323 2d2s_A Exocyst complex compone 35.7 1.4E+02 0.0047 22.3 7.4 84 161-247 25-118 (235)
324 1mzb_A Ferric uptake regulatio 35.4 47 0.0016 22.3 4.0 11 170-180 34-44 (136)
325 4ets_A Ferric uptake regulatio 34.1 41 0.0014 23.5 3.6 22 93-114 37-58 (162)
326 3ffl_A Anaphase-promoting comp 32.9 1.3E+02 0.0044 21.2 7.4 24 156-179 65-88 (167)
327 3c1d_A Protein ORAA, regulator 32.1 70 0.0024 22.1 4.5 69 171-244 47-119 (159)
328 3b7b_A Euchromatic histone-lys 32.0 1.4E+02 0.0048 21.3 7.9 178 60-255 13-205 (237)
329 2f6m_A Suppressor protein STP2 31.5 50 0.0017 19.2 3.0 47 187-234 4-50 (65)
330 1mzb_A Ferric uptake regulatio 31.4 48 0.0016 22.2 3.5 49 91-140 20-69 (136)
331 1n11_A Ankyrin; clathrin, BAND 30.8 2.1E+02 0.0071 23.0 9.6 84 162-255 283-372 (437)
332 2ko4_A Mediator of RNA polymer 30.5 92 0.0032 18.8 4.3 37 78-114 24-62 (81)
333 3jxi_A Vanilloid receptor-rela 30.3 96 0.0033 22.8 5.5 152 95-253 9-211 (260)
334 3eyy_A Putative iron uptake re 29.8 58 0.002 22.1 3.7 47 92-140 22-68 (145)
335 1wgl_A TOLL-interacting protei 29.5 80 0.0027 17.8 3.8 22 233-254 36-57 (59)
336 4a1g_A Mitotic checkpoint seri 29.4 56 0.0019 22.7 3.5 79 39-123 47-135 (152)
337 2fu4_A Ferric uptake regulatio 27.9 80 0.0027 18.6 3.8 47 190-236 21-68 (83)
338 2w57_A Ferric uptake regulatio 27.7 56 0.0019 22.3 3.4 12 203-214 35-46 (150)
339 3bqo_A Telomeric repeat-bindin 27.4 1.8E+02 0.0062 21.2 7.9 42 73-114 94-143 (211)
340 1oai_A Nuclear RNA export fact 26.8 47 0.0016 18.8 2.3 24 101-124 33-56 (59)
341 2pk8_A Uncharacterized protein 26.4 44 0.0015 20.9 2.2 15 242-256 25-39 (103)
342 4gq2_M Nucleoporin NUP120; bet 26.0 3.9E+02 0.013 24.6 9.7 124 61-199 816-950 (950)
343 3eyy_A Putative iron uptake re 25.9 1.3E+02 0.0044 20.3 4.9 31 202-232 34-64 (145)
344 3utm_A Tankyrase-1; tankyrase, 25.6 2.2E+02 0.0076 21.6 7.0 16 163-178 64-79 (351)
345 3bu8_A Telomeric repeat-bindin 25.4 1.6E+02 0.0054 21.9 5.4 18 229-246 123-140 (235)
346 3ljn_A Hypothetical protein; a 25.1 1.4E+02 0.0049 23.2 5.8 152 86-252 16-198 (364)
347 3enp_A TP53RK-binding protein; 24.5 1.7E+02 0.0057 20.8 5.4 87 10-111 8-98 (177)
348 2w57_A Ferric uptake regulatio 24.3 59 0.002 22.2 2.9 48 92-140 20-68 (150)
349 1y8m_A FIS1; mitochondria, unk 24.3 1.1E+02 0.0038 20.9 4.2 82 33-116 19-105 (144)
350 3o48_A Mitochondria fission 1 24.0 86 0.0029 21.2 3.5 66 50-115 35-105 (134)
351 3eu9_A Huntingtin-interacting 23.9 2E+02 0.0067 20.4 8.6 170 31-213 50-235 (240)
352 1oy3_D Transcription factor in 23.6 2.2E+02 0.0075 20.9 8.6 87 160-255 161-253 (282)
353 4b93_B Ankyrin repeat domain-c 23.6 2.3E+02 0.0079 21.1 7.8 132 111-255 69-213 (269)
354 4hbd_A KN motif and ankyrin re 23.3 1.3E+02 0.0045 22.5 5.1 82 159-245 185-272 (276)
355 2xai_A ASB-9, ankyrin repeat a 23.3 2.2E+02 0.0076 20.8 8.6 20 62-83 40-59 (261)
356 2dzn_A Probable 26S proteasome 23.3 1.2E+02 0.004 21.6 4.7 18 162-179 112-129 (228)
357 2es9_A Putative cytoplasmic pr 22.7 1E+02 0.0034 19.2 3.3 12 170-181 13-24 (115)
358 2etb_A Transient receptor pote 22.1 1.1E+02 0.0037 22.4 4.3 153 95-253 6-207 (256)
359 1awc_B Protein (GA binding pro 21.9 1.8E+02 0.006 19.1 5.8 82 93-179 4-89 (153)
360 1oyz_A Hypothetical protein YI 21.6 2.5E+02 0.0086 20.8 15.7 186 52-245 34-231 (280)
361 1jog_A Hypothetical protein HI 21.1 96 0.0033 21.2 3.5 54 104-158 54-114 (146)
362 2rfa_A Transient receptor pote 21.1 2.3E+02 0.0078 20.1 7.6 88 161-253 79-184 (232)
363 1ixm_A SPO0B, protein (sporula 21.1 1.3E+02 0.0045 21.5 4.4 68 170-246 15-84 (192)
364 2rg8_A Programmed cell death p 20.7 2.2E+02 0.0075 19.8 6.4 28 157-184 13-40 (165)
365 4fke_A Aminopeptidase N; zinc 20.7 4.9E+02 0.017 23.8 9.4 118 128-245 690-818 (909)
366 4ady_A RPN2, 26S proteasome re 20.3 2E+02 0.0068 26.7 6.1 156 33-195 503-671 (963)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=7.2e-35 Score=249.36 Aligned_cols=195 Identities=13% Similarity=0.112 Sum_probs=166.4
Q ss_pred hhhHHHHHHHHHhhccCcchh-hhhhhhhhhhccCCCChHHHHHHhccCC----CCChhhHHHHHHHHhcCCC-------
Q 038429 36 QKQLKRIHAQMLSTDFFFDPY-SASKLFTPCALSTFSSLEYARKMFDQIP----QPNLYTWNTLIRAYSSSDE------- 103 (258)
Q Consensus 36 ~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~~~~~~~~a~~~~~~m~----~~~~~~~~~li~~~~~~g~------- 103 (258)
...++.+...+.+.+..+++. +++.+|++|++.| ++++|.++|++|. +||..+||+||.+|++.+.
T Consensus 6 ~s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G--~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~ 83 (501)
T 4g26_A 6 ASPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKG--DVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPN 83 (501)
T ss_dssp ------------------CHHHHHHHHHHHTTTSC--CHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCC
T ss_pred cchHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhc
Confidence 355677778888888777665 5889999999999 9999999999996 4899999999999998765
Q ss_pred --hhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc-----cCchhHHHHHHHHHHhcCCHHHHHHH
Q 038429 104 --PIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF-----EDDLVISNSLIHFYAVCGDLAMAYCV 176 (258)
Q Consensus 104 --~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~~ 176 (258)
+++|.++|++| ...|+.||..||++||++|++.|++++|..+|+.| .||..+||+||.+|++.|++++|.++
T Consensus 84 ~~l~~A~~lf~~M-~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l 162 (501)
T 4g26_A 84 PGLSRGFDIFKQM-IVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEV 162 (501)
T ss_dssp HHHHHHHHHHHHH-HHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred chHHHHHHHHHHH-HHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHH
Confidence 67899999999 99999999999999999999999999999999999 89999999999999999999999999
Q ss_pred HHhcC----CCChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhcc
Q 038429 177 FVMIG----KKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKK 233 (258)
Q Consensus 177 ~~~m~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~ 233 (258)
|++|. .||..||++||.+|++.|++++|.+++++|++.|+.|+..||+.++..|+..
T Consensus 163 ~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 163 DAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99996 4899999999999999999999999999999999999999999999999864
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=4.4e-34 Score=244.49 Aligned_cols=181 Identities=10% Similarity=0.104 Sum_probs=160.2
Q ss_pred HHHHHhccCCC-----CChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCC---------c
Q 038429 75 YARKMFDQIPQ-----PNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQ---------F 140 (258)
Q Consensus 75 ~a~~~~~~m~~-----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~---------~ 140 (258)
.+..+.+++.+ .....++.+|++|++.|++++|+++|++| ++.|++||..|||+||++|++.+. +
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M-~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEA-RRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHH-HHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH-HHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 34555555543 23346899999999999999999999999 899999999999999999998765 4
Q ss_pred chhhhhhhcc-----cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CChhhHHHHHHHHHcCCChHHHHHHHHHH
Q 038429 141 RVGQAIHGMF-----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK----KDVVSWNSMISGFVEGGFFEKAIELYREM 211 (258)
Q Consensus 141 ~~a~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m 211 (258)
+.|.++|+.| .||..|||+||++|++.|++++|.++|++|++ ||..|||+||.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 6788999999 89999999999999999999999999999964 89999999999999999999999999999
Q ss_pred HHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHcCCccccc
Q 038429 212 EVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDLT 256 (258)
Q Consensus 212 ~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 256 (258)
.+.|+.||..||++||++|++.|++++|.+++++|.+.|+.|+..
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~ 211 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKS 211 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHH
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHH
Confidence 999999999999999999999999999999999999999999864
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.86 E-value=2.6e-21 Score=168.96 Aligned_cols=221 Identities=9% Similarity=-0.064 Sum_probs=197.8
Q ss_pred ccCcccccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC---CChhhHHHHHHHHhcCCC
Q 038429 27 QRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ---PNLYTWNTLIRAYSSSDE 103 (258)
Q Consensus 27 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~ 103 (258)
...+.+.|++++|.++|+.+.+. .++..+++.++.+|.+.| ++++|..+|+++.+ .+..+|+.++.++.+.|+
T Consensus 279 ~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 354 (597)
T 2xpi_A 279 LNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRS--RFIDVLAITTKILEIDPYNLDVYPLHLASLHESGE 354 (597)
T ss_dssp SCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTC
T ss_pred HHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCC
Confidence 34788899999999999999876 588999999999999999 99999999998853 578899999999999999
Q ss_pred hhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 038429 104 PIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVFVM 179 (258)
Q Consensus 104 ~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 179 (258)
+++|..+|+++ .+. .+.+..+++.+...|.+.|++++|..+|+.+ +.+..+|+.++.+|.+.|++++|.++|++
T Consensus 355 ~~~A~~~~~~~-~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 432 (597)
T 2xpi_A 355 KNKLYLISNDL-VDR-HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTT 432 (597)
T ss_dssp HHHHHHHHHHH-HHH-CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHH-Hhh-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999 432 3456789999999999999999999999988 55678999999999999999999999998
Q ss_pred cCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHc----CCc
Q 038429 180 IGK---KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN----GIK 252 (258)
Q Consensus 180 m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~ 252 (258)
+.+ ++..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|+.+...|.+.|++++|.++|+++.+. +..
T Consensus 433 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 511 (597)
T 2xpi_A 433 AARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSN 511 (597)
T ss_dssp HHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccc
Confidence 753 378899999999999999999999999998763 346889999999999999999999999999876 666
Q ss_pred cc
Q 038429 253 MD 254 (258)
Q Consensus 253 p~ 254 (258)
|+
T Consensus 512 p~ 513 (597)
T 2xpi_A 512 EK 513 (597)
T ss_dssp SG
T ss_pred hh
Confidence 76
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.86 E-value=6.7e-21 Score=166.36 Aligned_cols=215 Identities=9% Similarity=-0.082 Sum_probs=106.9
Q ss_pred CcccccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC---CChhhHHHHHHHHhcCCChh
Q 038429 29 HPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ---PNLYTWNTLIRAYSSSDEPI 105 (258)
Q Consensus 29 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~ 105 (258)
.+.+.|++++|.++|+.+.+.+ +.+..+++.++.++.+.| +.++|..+|+++.+ .+..+|+.++..|.+.|+++
T Consensus 314 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 390 (597)
T 2xpi_A 314 TLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESG--EKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKIS 390 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHT--CHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhC--CHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHH
Confidence 5566667777777777776554 224444555555555555 55555555544421 33444555555555555555
Q ss_pred hHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 038429 106 QSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIG 181 (258)
Q Consensus 106 ~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 181 (258)
+|.++|+++ .+. .+.+..+|+.++.++.+.|++++|..+++.+ +.+..+|+.+..+|.+.|++++|.++|+.+.
T Consensus 391 ~A~~~~~~~-~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 468 (597)
T 2xpi_A 391 EARRYFSKS-STM-DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSY 468 (597)
T ss_dssp HHHHHHHHH-HHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555555554 221 1122334555555555555555555555444 3344455555555555555555555554443
Q ss_pred C---CChhhHHHHHHHHHcCCChHHHHHHHHHHHHc----CCCCC--hhhHHHHHHHHhccCChhHHHHHHHHHHH
Q 038429 182 K---KDVVSWNSMISGFVEGGFFEKAIELYREMEVE----NVKPD--EVTMVVVLSACAKKRDLEFGIWVSSHIEK 248 (258)
Q Consensus 182 ~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 248 (258)
+ .+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..+..+|.+.|++++|.++++++.+
T Consensus 469 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 544 (597)
T 2xpi_A 469 ALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLL 544 (597)
T ss_dssp HHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 2 23444555555555555555555555554443 33444 34455555555555555555555554443
No 5
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.85 E-value=1.3e-21 Score=174.15 Aligned_cols=103 Identities=12% Similarity=0.181 Sum_probs=70.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcC-------CCChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHH
Q 038429 154 LVISNSLIHFYAVCGDLAMAYCVFVMIG-------KKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVV 226 (258)
Q Consensus 154 ~~~~~~li~~~~~~g~~~~a~~~~~~m~-------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~l 226 (258)
..|||+||++||+.|++++|.++|.+|. .||++|||+||.+||+.|++++|.++|++|.+.|+.||..||++|
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 3467777777777777777777775542 367777777777777777777777777777777777777777777
Q ss_pred HHHHhccCCh-hHHHHHHHHHHHcCCccccc
Q 038429 227 LSACAKKRDL-EFGIWVSSHIEKNGIKMDLT 256 (258)
Q Consensus 227 i~~~~~~g~~-~~a~~~~~~m~~~g~~p~~~ 256 (258)
|+++++.|+. ++|.++|++|.+.|+.||.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~v 237 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQAL 237 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChh
Confidence 7777776663 56667777777777777654
No 6
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.81 E-value=4.4e-21 Score=170.75 Aligned_cols=124 Identities=15% Similarity=0.114 Sum_probs=90.2
Q ss_pred hHHHHHHHhcCcCCcchhhhhhhcc--------cCchhHHHHHHHHHHhcCCHHHHHHHHHhcC----CCChhhHHHHHH
Q 038429 126 TLPFVIKAAARPVQFRVGQAIHGMF--------EDDLVISNSLIHFYAVCGDLAMAYCVFVMIG----KKDVVSWNSMIS 193 (258)
Q Consensus 126 ~~~~ll~~~~~~~~~~~a~~~~~~~--------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~----~~~~~~~~~li~ 193 (258)
||++||++||+.|++++|..+|..| .||+.|||+||++||+.|++++|.++|++|. .||++|||+||.
T Consensus 129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~ 208 (1134)
T 3spa_A 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQ 208 (1134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 3444444444444444444444332 4677888888889999999999999999996 489999999999
Q ss_pred HHHcCCCh-HHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHcCCccc
Q 038429 194 GFVEGGFF-EKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKMD 254 (258)
Q Consensus 194 ~~~~~g~~-~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 254 (258)
++|+.|+. ++|.++|++|.+.|+.||..||++++.++.+. ...+.++++ ..++.|+
T Consensus 209 glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~ 265 (1134)
T 3spa_A 209 CMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLP 265 (1134)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCC
T ss_pred HHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCC
Confidence 99999874 78899999999999999999999988766553 333344444 4455554
No 7
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.70 E-value=8e-16 Score=127.42 Aligned_cols=212 Identities=12% Similarity=-0.040 Sum_probs=135.7
Q ss_pred ccccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC---CChhhHHHHHHHHhcCCChhhH
Q 038429 31 HFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ---PNLYTWNTLIRAYSSSDEPIQS 107 (258)
Q Consensus 31 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a 107 (258)
...|++++|.+++..+.+.. +.+..+|..+...+.+.| ++++|...|+++.+ .+...|..+...+...|++++|
T Consensus 146 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A 222 (388)
T 1w3b_A 146 KALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQG--EIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRA 222 (388)
T ss_dssp HTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHH
T ss_pred HHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Confidence 33455555555555555443 223445555555555555 55555555554432 2344555555556666666666
Q ss_pred HHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-
Q 038429 108 FMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK- 182 (258)
Q Consensus 108 ~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~- 182 (258)
+..|++..... +.+..++..+..++.+.|++++|...++.+ +.+..+|+.+...|.+.|++++|.+.|+++.+
T Consensus 223 ~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 300 (388)
T 1w3b_A 223 VAAYLRALSLS--PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL 300 (388)
T ss_dssp HHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 66655552211 123456677777777777777777777776 34456777777778888888888877776643
Q ss_pred --CChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHH
Q 038429 183 --KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEK 248 (258)
Q Consensus 183 --~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 248 (258)
.+..+|+.+...+...|++++|...++++.+.. +.+..++..+...+.+.|++++|.+.++++.+
T Consensus 301 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 301 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 366778888888888888888888888776542 23456788888888888888888888888765
No 8
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.67 E-value=3.1e-15 Score=123.86 Aligned_cols=215 Identities=11% Similarity=-0.029 Sum_probs=150.6
Q ss_pred CcccccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC---CChhhHHHHHHHHhcCCChh
Q 038429 29 HPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ---PNLYTWNTLIRAYSSSDEPI 105 (258)
Q Consensus 29 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~ 105 (258)
.+...|++++|.+.+..+.+.. +.+...+..+...+...| ++++|...|+++.+ .+..+|+.+...+.+.|+++
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 186 (388)
T 1w3b_A 110 ALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALG--RLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIW 186 (388)
T ss_dssp HHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTS--CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 3444455555555555555443 122334444555555555 66666666655432 34566777777777777777
Q ss_pred hHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 038429 106 QSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIG 181 (258)
Q Consensus 106 ~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 181 (258)
+|+..|+++. +.+ +.+...|..+...+...|++++|...++.. +.+..++..+...|.+.|++++|.+.|+++.
T Consensus 187 ~A~~~~~~al-~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 264 (388)
T 1w3b_A 187 LAIHHFEKAV-TLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAI 264 (388)
T ss_dssp HHHHHHHHHH-HHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-hcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7777777763 221 223456677777777777888777777766 4456788888999999999999999998775
Q ss_pred C--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHc
Q 038429 182 K--K-DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249 (258)
Q Consensus 182 ~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 249 (258)
+ | +..+|..+...+.+.|++++|...|+++.+.. +.+..++..+...+.+.|++++|...++++.+.
T Consensus 265 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 334 (388)
T 1w3b_A 265 ELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEV 334 (388)
T ss_dssp HTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS
T ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3 4 56788889999999999999999999888763 456778889999999999999999999988653
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.64 E-value=1.1e-14 Score=122.62 Aligned_cols=214 Identities=9% Similarity=-0.050 Sum_probs=107.1
Q ss_pred CcccccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC---CChhhHHHHHHHHhcCCChh
Q 038429 29 HPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ---PNLYTWNTLIRAYSSSDEPI 105 (258)
Q Consensus 29 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~ 105 (258)
.+.+.|++++|..+|+.+.+.. +.+...+..+..++...| ++++|...|+++.+ .+..+|..+...|.+.|+++
T Consensus 35 ~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 111 (450)
T 2y4t_A 35 KLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMG--KSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLD 111 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Confidence 4444555555555555555442 223444555555555555 55555555544322 23344444444444445555
Q ss_pred hHHHHHHHhHhcCC------------------------------------------------CCCCcchHHHHHHHhcCc
Q 038429 106 QSFMIFLQLVYNSP------------------------------------------------YFPNEFTLPFVIKAAARP 137 (258)
Q Consensus 106 ~a~~~~~~m~~~~~------------------------------------------------~~p~~~~~~~ll~~~~~~ 137 (258)
+|...|+++ .+.. .+.+..++..+..++.+.
T Consensus 112 ~A~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 190 (450)
T 2y4t_A 112 EAEDDFKKV-LKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKE 190 (450)
T ss_dssp HHHHHHHHH-HTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHH-HhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHC
Confidence 544444444 2111 112334455555556666
Q ss_pred CCcchhhhhhhcc----cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHH------------HHHHHcC
Q 038429 138 VQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK--K-DVVSWNSM------------ISGFVEG 198 (258)
Q Consensus 138 ~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~l------------i~~~~~~ 198 (258)
|++++|...++.+ +.+..+|+.+...|.+.|++++|.+.|+.+.+ | +...+..+ ...+...
T Consensus 191 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (450)
T 2y4t_A 191 GEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRD 270 (450)
T ss_dssp TCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 6666666666555 44455666666666666666666666655432 2 22223222 4555555
Q ss_pred CChHHHHHHHHHHHHcCCCCC-----hhhHHHHHHHHhccCChhHHHHHHHHHHH
Q 038429 199 GFFEKAIELYREMEVENVKPD-----EVTMVVVLSACAKKRDLEFGIWVSSHIEK 248 (258)
Q Consensus 199 g~~~~a~~~~~~m~~~~~~p~-----~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 248 (258)
|++++|..+|+++.+. .|+ ...|..+...+.+.|++++|...++++.+
T Consensus 271 g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 323 (450)
T 2y4t_A 271 GRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQ 323 (450)
T ss_dssp TCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5555555555555542 233 22455555555555555555555555543
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.64 E-value=1.5e-15 Score=127.88 Aligned_cols=205 Identities=10% Similarity=-0.023 Sum_probs=153.3
Q ss_pred HHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC---CChhhHHHHHHHHhcCCChhhHHHHHHHhH
Q 038429 39 LKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ---PNLYTWNTLIRAYSSSDEPIQSFMIFLQLV 115 (258)
Q Consensus 39 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 115 (258)
+...+....... +.+...+..+...+.+.| ++++|..+|+++.+ .+..+|..+..++.+.|++++|+..|+.+
T Consensus 11 ~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g--~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a- 86 (450)
T 2y4t_A 11 VDLGTENLYFQS-MADVEKHLELGKKLLAAG--QLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKV- 86 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-
T ss_pred cccccccccccc-HHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHH-
Confidence 334444444443 456778999999999999 99999999998753 57889999999999999999999999998
Q ss_pred hcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc----cCch---hHHHHHHH------------HHHhcCCHHHHHHH
Q 038429 116 YNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF----EDDL---VISNSLIH------------FYAVCGDLAMAYCV 176 (258)
Q Consensus 116 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~---~~~~~li~------------~~~~~g~~~~a~~~ 176 (258)
.+.+ +.+..++..+..++.+.|++++|...++.+ +.+. ..+..+.. .|.+.|++++|.+.
T Consensus 87 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 165 (450)
T 2y4t_A 87 IQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAF 165 (450)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4332 345678899999999999999999999988 3333 55555544 48888999999999
Q ss_pred HHhcCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHc
Q 038429 177 FVMIGK---KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249 (258)
Q Consensus 177 ~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 249 (258)
|+.+.+ .+...+..+...|...|++++|..+|+++.+.. +.+..++..+...+...|++++|...++++.+.
T Consensus 166 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 240 (450)
T 2y4t_A 166 LDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL 240 (450)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 987653 366677778888888888888888888776642 235667777777888888888888888777643
No 11
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.62 E-value=6.4e-15 Score=120.93 Aligned_cols=218 Identities=11% Similarity=-0.002 Sum_probs=176.9
Q ss_pred cCcccccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC---CChhhHHHHHHHHhcCCCh
Q 038429 28 RHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ---PNLYTWNTLIRAYSSSDEP 104 (258)
Q Consensus 28 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~ 104 (258)
..+.+.|++++|..+++.+.+.. +.+..++..+..++...| ++++|...|++..+ .+..+|..+...|...|++
T Consensus 73 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 149 (365)
T 4eqf_A 73 LKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENE--NEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQ 149 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccH
Confidence 36677899999999999999876 457889999999999999 99999999997753 5688999999999999999
Q ss_pred hhHHHHHHHhHhcCCCCC--------CcchHHHHHHHhcCcCCcchhhhhhhcc---cC---chhHHHHHHHHHHhcCCH
Q 038429 105 IQSFMIFLQLVYNSPYFP--------NEFTLPFVIKAAARPVQFRVGQAIHGMF---ED---DLVISNSLIHFYAVCGDL 170 (258)
Q Consensus 105 ~~a~~~~~~m~~~~~~~p--------~~~~~~~ll~~~~~~~~~~~a~~~~~~~---~~---~~~~~~~li~~~~~~g~~ 170 (258)
++|+..|+++.....-.+ ....+..+...+.+.|++++|...++.. .| +..++..+...|.+.|++
T Consensus 150 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~ 229 (365)
T 4eqf_A 150 QDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEF 229 (365)
T ss_dssp HHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCH
Confidence 999999999843211000 1223445688899999999999999999 33 678999999999999999
Q ss_pred HHHHHHHHhcCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHH
Q 038429 171 AMAYCVFVMIGK--K-DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIE 247 (258)
Q Consensus 171 ~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 247 (258)
++|.+.|++..+ | +..+|+.+...|...|++++|...|++..+.. +.+..++..+...|.+.|++++|...+++..
T Consensus 230 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 308 (365)
T 4eqf_A 230 NRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTAL 308 (365)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999998753 3 67899999999999999999999999988753 2346789999999999999999999999886
Q ss_pred Hc
Q 038429 248 KN 249 (258)
Q Consensus 248 ~~ 249 (258)
+.
T Consensus 309 ~~ 310 (365)
T 4eqf_A 309 SL 310 (365)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 12
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.61 E-value=3.2e-14 Score=113.64 Aligned_cols=212 Identities=9% Similarity=-0.034 Sum_probs=143.9
Q ss_pred ccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCCCChhhHHHHHHHHhcCCChhhHHHHHH
Q 038429 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFL 112 (258)
Q Consensus 33 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 112 (258)
.|+...|....+..............-.+.++|...| +++.|...++....|+..++..+...+...|+.++|++.++
T Consensus 12 ~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g--~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~ 89 (291)
T 3mkr_A 12 IGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQR--KYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELD 89 (291)
T ss_dssp TTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTT--CHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCC--CHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 4667777766655443321222234455667777778 88888887776655677777788888888888888888888
Q ss_pred HhHhcCCCCCC-cchHHHHHHHhcCcCCcchhhhhhhcccCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhhH-
Q 038429 113 QLVYNSPYFPN-EFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK--KDVVSW- 188 (258)
Q Consensus 113 ~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~~- 188 (258)
++ ...+..|+ ...+..+-..+...|++++|...++. +.+...+..+...|.+.|++++|.+.|+.+.+ |+....
T Consensus 90 ~l-l~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~ 167 (291)
T 3mkr_A 90 RE-MSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQ 167 (291)
T ss_dssp HH-HHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HH-HhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHH
Confidence 87 44444454 34455555777788888888888777 66667777788888888888888888877753 443211
Q ss_pred --HHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHc
Q 038429 189 --NSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249 (258)
Q Consensus 189 --~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 249 (258)
...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|...+++..+.
T Consensus 168 l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 168 LATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 12233344557788888888887765 3446667777777788888888888888876654
No 13
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.60 E-value=9.4e-16 Score=127.05 Aligned_cols=182 Identities=11% Similarity=0.046 Sum_probs=32.5
Q ss_pred cccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCCCChhhHHHHHHHHhcCCChhhHHHHH
Q 038429 32 FLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIF 111 (258)
Q Consensus 32 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~ 111 (258)
+.|++++|.++++.+ +++.+|..|..++.+.| ++++|.+.|.+. +|..+|..++.++...|++++|+..+
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g--~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl 84 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKG--MVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYL 84 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcC--CHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 344555555555555 22235555555555555 555555555432 34445555555555555555555544
Q ss_pred HHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcccCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHH
Q 038429 112 LQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSM 191 (258)
Q Consensus 112 ~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~l 191 (258)
+.. ++. .+++.+.+.++.+|.+.|++++++++++. |+..+|+.+...|...|++++|...|..+ ..|..+
T Consensus 85 ~~a-rk~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~--pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~L 154 (449)
T 1b89_A 85 QMA-RKK--ARESYVETELIFALAKTNRLAELEEFING--PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRL 154 (449)
T ss_dssp ---------------------------CHHHHTTTTTC--C----------------CTTTHHHHHHHT-----TCHHHH
T ss_pred HHH-HHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHH
Confidence 433 221 23344555555555555555555544442 33345555555555555555555555443 244444
Q ss_pred HHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHH
Q 038429 192 ISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239 (258)
Q Consensus 192 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a 239 (258)
..++.+.|++++|.+.++++ .+..+|..++.+|...|+++.|
T Consensus 155 A~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA 196 (449)
T 1b89_A 155 ASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLA 196 (449)
T ss_dssp HHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHH
Confidence 44444444444444444443 1334444444444444433333
No 14
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.57 E-value=1.6e-13 Score=110.38 Aligned_cols=216 Identities=8% Similarity=-0.067 Sum_probs=174.7
Q ss_pred CcccccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC---CChhhHHHHHHHHhcCC-Ch
Q 038429 29 HPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ---PNLYTWNTLIRAYSSSD-EP 104 (258)
Q Consensus 29 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g-~~ 104 (258)
.+...|++++|.++++.+.+.. +.+...+..++.++...| ++++|..+++++.+ .+...|..+...+...| ++
T Consensus 31 ~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 107 (330)
T 3hym_B 31 RHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELN--KANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKN 107 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHT--CHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCH
T ss_pred HHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhh--hHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhH
Confidence 5556699999999999998876 445667777888888889 99999999987653 46778999999999999 89
Q ss_pred hhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 038429 105 IQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVFVMI 180 (258)
Q Consensus 105 ~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 180 (258)
++|...|++. .+.. +.+..+|..+...+...|++++|...++.. +.+...+..+...|...|++++|.+.|+..
T Consensus 108 ~~A~~~~~~a-~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 185 (330)
T 3hym_B 108 EHARRYLSKA-TTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQA 185 (330)
T ss_dssp HHHHHHHHHH-HTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9999999988 4332 334667888999999999999999998888 445677888889999999999999999876
Q ss_pred CC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcC--------CCCChhhHHHHHHHHhccCChhHHHHHHHHHHHc
Q 038429 181 GK--K-DVVSWNSMISGFVEGGFFEKAIELYREMEVEN--------VKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249 (258)
Q Consensus 181 ~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--------~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 249 (258)
.+ | +...+..+...+...|++++|...+++..+.. ...+..++..+...+.+.|++++|...+++..+.
T Consensus 186 l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 265 (330)
T 3hym_B 186 LSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL 265 (330)
T ss_dssp HTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 54 3 66788888888999999999999998876631 1233567888888888999999999999888764
No 15
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.57 E-value=9.4e-14 Score=113.73 Aligned_cols=217 Identities=11% Similarity=-0.006 Sum_probs=178.9
Q ss_pred ccCcccccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC---CChhhHHHHHHHHhcCCC
Q 038429 27 QRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ---PNLYTWNTLIRAYSSSDE 103 (258)
Q Consensus 27 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~ 103 (258)
...+...|++++|...++.+.+.. +.+...+..+..++.+.| ++++|...|++..+ .+..+|..+...+...|+
T Consensus 71 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~ 147 (368)
T 1fch_A 71 GLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENE--QELLAISALRRCLELKPDNQTALMALAVSFTNESL 147 (368)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCc--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Confidence 346677899999999999999876 457788999999999999 99999999987643 578899999999999999
Q ss_pred hhhHHHHHHHhHhcCCCCCCcchHHH---------------HHHHhcCcCCcchhhhhhhcc---cC---chhHHHHHHH
Q 038429 104 PIQSFMIFLQLVYNSPYFPNEFTLPF---------------VIKAAARPVQFRVGQAIHGMF---ED---DLVISNSLIH 162 (258)
Q Consensus 104 ~~~a~~~~~~m~~~~~~~p~~~~~~~---------------ll~~~~~~~~~~~a~~~~~~~---~~---~~~~~~~li~ 162 (258)
+++|+..|+++ .... +.+...+.. .+..+...|++++|...++.. .| +..++..+..
T Consensus 148 ~~~A~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~ 225 (368)
T 1fch_A 148 QRQACEILRDW-LRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGV 225 (368)
T ss_dssp HHHHHHHHHHH-HHTS-TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHH
Confidence 99999999998 4332 112222211 133333889999999999988 33 4789999999
Q ss_pred HHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHH
Q 038429 163 FYAVCGDLAMAYCVFVMIGK--K-DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239 (258)
Q Consensus 163 ~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a 239 (258)
.|.+.|++++|.+.|+...+ | +...|..+...+...|++++|...|++..+.. +.+...+..+...+.+.|++++|
T Consensus 226 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A 304 (368)
T 1fch_A 226 LFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREA 304 (368)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999987753 4 67789999999999999999999999988753 23567899999999999999999
Q ss_pred HHHHHHHHHc
Q 038429 240 IWVSSHIEKN 249 (258)
Q Consensus 240 ~~~~~~m~~~ 249 (258)
...+++..+.
T Consensus 305 ~~~~~~al~~ 314 (368)
T 1fch_A 305 VEHFLEALNM 314 (368)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999988653
No 16
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.56 E-value=2e-13 Score=109.70 Aligned_cols=216 Identities=11% Similarity=-0.006 Sum_probs=178.4
Q ss_pred cCcccccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC---CChhhHHHHHHHHhcCCCh
Q 038429 28 RHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ---PNLYTWNTLIRAYSSSDEP 104 (258)
Q Consensus 28 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~ 104 (258)
..+...|++++|..+++.+.+.. +.+...+..+..++...| ++++|...|++..+ .+..+|..+...+...|++
T Consensus 29 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~ 105 (327)
T 3cv0_A 29 LSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENE--KDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA 105 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCH
Confidence 36667899999999999999876 447788889999999999 99999999987653 5678899999999999999
Q ss_pred hhHHHHHHHhHhcCCCCCCcchHHHH--------------HH-HhcCcCCcchhhhhhhcc----cCchhHHHHHHHHHH
Q 038429 105 IQSFMIFLQLVYNSPYFPNEFTLPFV--------------IK-AAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYA 165 (258)
Q Consensus 105 ~~a~~~~~~m~~~~~~~p~~~~~~~l--------------l~-~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~ 165 (258)
++|+..++.. .+.. +.+...+..+ .. .+...|++++|...++.. +.+...+..+...|.
T Consensus 106 ~~A~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 183 (327)
T 3cv0_A 106 NAALASLRAW-LLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYN 183 (327)
T ss_dssp HHHHHHHHHH-HHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 9999999998 4332 2223333333 22 478889999999999888 557789999999999
Q ss_pred hcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHH
Q 038429 166 VCGDLAMAYCVFVMIGK--K-DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWV 242 (258)
Q Consensus 166 ~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~ 242 (258)
+.|++++|.+.|+...+ | +..+|..+...+...|++++|...+++..+.. +.+...+..+...+.+.|++++|.+.
T Consensus 184 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 262 (327)
T 3cv0_A 184 LSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQ 262 (327)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHH
Confidence 99999999999987753 3 67789999999999999999999999988753 23567899999999999999999999
Q ss_pred HHHHHHc
Q 038429 243 SSHIEKN 249 (258)
Q Consensus 243 ~~~m~~~ 249 (258)
+++..+.
T Consensus 263 ~~~a~~~ 269 (327)
T 3cv0_A 263 LVRAIYM 269 (327)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9988754
No 17
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.56 E-value=1.1e-14 Score=120.59 Aligned_cols=203 Identities=12% Similarity=0.002 Sum_probs=90.9
Q ss_pred CCCceeeecCCCccCcccccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC--CChhhHH
Q 038429 15 PNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ--PNLYTWN 92 (258)
Q Consensus 15 p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~--~~~~~~~ 92 (258)
+++..+..+.. +..+.|++++|.+.|.. .+|+..|..++.++...| ++++|...++...+ +++.+.+
T Consensus 30 ~~~~vWs~La~---A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g--~~EeAi~yl~~ark~~~~~~i~~ 98 (449)
T 1b89_A 30 NEPAVWSQLAK---AQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSG--NWEELVKYLQMARKKARESYVET 98 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CChHHHHHHHH---HHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHhCccchhHH
Confidence 44445554444 88889999999999864 357789999999999999 99999998776654 5668889
Q ss_pred HHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcccCchhHHHHHHHHHHhcCCHHH
Q 038429 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAM 172 (258)
Q Consensus 93 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 172 (258)
.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|...|..+ ..|..+..++.+.|++++
T Consensus 99 ~Li~~Y~Klg~l~e~e~f~~--------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----~n~~~LA~~L~~Lg~yq~ 166 (449)
T 1b89_A 99 ELIFALAKTNRLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----SNFGRLASTLVHLGEYQA 166 (449)
T ss_dssp ----------CHHHHTTTTT--------CC----------------CTTTHHHHHHHT----TCHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHhCCHHHHHHHHc--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----hhHHHHHHHHHHhccHHH
Confidence 99999999999999877663 377789999999999999999999999976 589999999999999999
Q ss_pred HHHHHHhcCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHH
Q 038429 173 AYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIE 247 (258)
Q Consensus 173 a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 247 (258)
|.+.+..+. ++.+|..++.+|+..|+++.|...... +..+..-...++..|.+.|.+++|..+++...
T Consensus 167 AVea~~KA~--~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL 234 (449)
T 1b89_A 167 AVDGARKAN--STRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAAL 234 (449)
T ss_dssp HHHHHHHHT--CHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHcC--CchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 999999884 889999999999999999999554433 22344445578899999999999998888764
No 18
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.52 E-value=3.6e-14 Score=116.41 Aligned_cols=215 Identities=8% Similarity=-0.108 Sum_probs=171.7
Q ss_pred cCcccccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC--C-C----------hhhHHHH
Q 038429 28 RHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ--P-N----------LYTWNTL 94 (258)
Q Consensus 28 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~--~-~----------~~~~~~l 94 (258)
..+...|++++|...+..+.+.. +.+..++..+..+|...| ++++|...|++..+ | + ...+..+
T Consensus 107 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l 183 (365)
T 4eqf_A 107 ITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTNTS--HQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRM 183 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCHHHHCC--------------
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHccc--cHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHH
Confidence 36677899999999999999876 456889999999999999 99999999988754 2 1 2334456
Q ss_pred HHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhcCCH
Q 038429 95 IRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDL 170 (258)
Q Consensus 95 i~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~ 170 (258)
...+.+.|++++|+..|+++.....-.++..++..+...+...|++++|...++.. +.+..+|+.+...|.+.|++
T Consensus 184 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 263 (365)
T 4eqf_A 184 SKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRS 263 (365)
T ss_dssp -----CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 88999999999999999999544333336788999999999999999999999998 66788999999999999999
Q ss_pred HHHHHHHHhcCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcC---CC--------CChhhHHHHHHHHhccCCh
Q 038429 171 AMAYCVFVMIGK--K-DVVSWNSMISGFVEGGFFEKAIELYREMEVEN---VK--------PDEVTMVVVLSACAKKRDL 236 (258)
Q Consensus 171 ~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---~~--------p~~~t~~~li~~~~~~g~~ 236 (258)
++|.+.|+...+ | +..+|..+...|...|++++|...|++..+.. .. .+...|..+..++...|+.
T Consensus 264 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 343 (365)
T 4eqf_A 264 EEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQP 343 (365)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcH
Confidence 999999998754 4 57889999999999999999999999987642 11 1367899999999999999
Q ss_pred hHHHHHHHH
Q 038429 237 EFGIWVSSH 245 (258)
Q Consensus 237 ~~a~~~~~~ 245 (258)
+.+..+...
T Consensus 344 ~~a~~~~~~ 352 (365)
T 4eqf_A 344 ELFQAANLG 352 (365)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHh
Confidence 988877654
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.50 E-value=1.2e-12 Score=105.32 Aligned_cols=216 Identities=9% Similarity=-0.028 Sum_probs=180.9
Q ss_pred CcccccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC---CChhhHHHHHHHHhcCCChh
Q 038429 29 HPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ---PNLYTWNTLIRAYSSSDEPI 105 (258)
Q Consensus 29 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~ 105 (258)
.+...|++++|..++..+.+.. +.+...+..+...+...| .++++|...|++..+ .+..+|..+...+...|+++
T Consensus 65 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 142 (330)
T 3hym_B 65 TLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVG-HKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHD 142 (330)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSC-SCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHH
T ss_pred HHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHH
Confidence 5567789999999999999875 446777888888887765 268889999987643 46778999999999999999
Q ss_pred hHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 038429 106 QSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIG 181 (258)
Q Consensus 106 ~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 181 (258)
+|+..|++. .+.. +.+...+..+...+...|++++|...++.. +.+...+..+...|.+.|++++|.+.|+...
T Consensus 143 ~A~~~~~~a-~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 220 (330)
T 3hym_B 143 QAMAAYFTA-AQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDAL 220 (330)
T ss_dssp HHHHHHHHH-HHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 999999998 3332 334567888999999999999999999988 6677899999999999999999999998764
Q ss_pred C-----------C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHc
Q 038429 182 K-----------K-DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249 (258)
Q Consensus 182 ~-----------~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 249 (258)
+ | +..+|..+...+...|++++|...+++..+.. +.+...+..+...+.+.|++++|.+.+++..+.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 221 EKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 2 2 45689999999999999999999999988753 235678999999999999999999999987653
No 20
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.49 E-value=5e-13 Score=103.69 Aligned_cols=206 Identities=7% Similarity=-0.070 Sum_probs=175.0
Q ss_pred CcccccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC--CC--------hhhHHHHHHHH
Q 038429 29 HPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ--PN--------LYTWNTLIRAY 98 (258)
Q Consensus 29 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~--~~--------~~~~~~li~~~ 98 (258)
.+...|++++|..++..+.+.. .+...+..+..++...| ++++|...+++..+ |+ ..+|..+...+
T Consensus 14 ~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 89 (258)
T 3uq3_A 14 KFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKG--EYETAISTLNDAVEQGREMRADYKVISKSFARIGNAY 89 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHH
Confidence 4456789999999999999988 78899999999999999 99999999987754 21 57899999999
Q ss_pred hcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhcCCHHHHH
Q 038429 99 SSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMAY 174 (258)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~ 174 (258)
.+.|++++|+..|++... . .|+. ..+.+.|++++|...++.. +.+...+..+...|...|++++|.
T Consensus 90 ~~~~~~~~A~~~~~~a~~-~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 159 (258)
T 3uq3_A 90 HKLGDLKKTIEYYQKSLT-E--HRTA-------DILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAV 159 (258)
T ss_dssp HHTTCHHHHHHHHHHHHH-H--CCCH-------HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcccHHHHHHHHHHHHh-c--Cchh-------HHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHH
Confidence 999999999999999843 2 2442 3455668899999998887 455678899999999999999999
Q ss_pred HHHHhcCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHc
Q 038429 175 CVFVMIGK---KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249 (258)
Q Consensus 175 ~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 249 (258)
+.|+...+ .+...|..+...|...|++++|...+++..+.. +.+...|..+...+.+.|++++|.+.+++..+.
T Consensus 160 ~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 160 KAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 99988753 367889999999999999999999999998753 234678999999999999999999999988654
No 21
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.49 E-value=8.8e-13 Score=112.55 Aligned_cols=215 Identities=10% Similarity=-0.064 Sum_probs=184.5
Q ss_pred CcccccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC---CChhhHHHHHHHHhcCCChh
Q 038429 29 HPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ---PNLYTWNTLIRAYSSSDEPI 105 (258)
Q Consensus 29 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~ 105 (258)
.+...|+++.|..++..+.+.... ...+..+..++...| ++++|...+++..+ .+..+|..+...+...|+++
T Consensus 246 ~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 321 (514)
T 2gw1_A 246 FKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRN--DSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYD 321 (514)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSS--CCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTT
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCC--CHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHH
Confidence 566779999999999999987644 888999999999999 99999999987643 46778999999999999999
Q ss_pred hHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 038429 106 QSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIG 181 (258)
Q Consensus 106 ~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 181 (258)
+|+..|++. .+.. +.+..++..+...+...|++++|...++.. +.+...+..+...|.+.|++++|.+.|+.+.
T Consensus 322 ~A~~~~~~~-~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 399 (514)
T 2gw1_A 322 QAGKDFDKA-KELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAI 399 (514)
T ss_dssp HHHHHHHHH-HHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999998 4432 335678999999999999999999999988 5567899999999999999999999998875
Q ss_pred C--C-C------hhhHHHHHHHHHc---CCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHc
Q 038429 182 K--K-D------VVSWNSMISGFVE---GGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249 (258)
Q Consensus 182 ~--~-~------~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 249 (258)
+ | + ...|..+...+.. .|++++|...+++..... +.+..++..+...+.+.|++++|...+++..+.
T Consensus 400 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 400 ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 4 2 2 3389999999999 999999999999988753 235678899999999999999999999998765
Q ss_pred C
Q 038429 250 G 250 (258)
Q Consensus 250 g 250 (258)
.
T Consensus 479 ~ 479 (514)
T 2gw1_A 479 A 479 (514)
T ss_dssp C
T ss_pred c
Confidence 3
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.48 E-value=1.8e-13 Score=112.00 Aligned_cols=215 Identities=11% Similarity=-0.059 Sum_probs=175.0
Q ss_pred cCcccccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC--C-ChhhHHH-----------
Q 038429 28 RHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ--P-NLYTWNT----------- 93 (258)
Q Consensus 28 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~----------- 93 (258)
..+...|+++.|...+..+.+.. +.+..++..+..++...| ++++|...|+++.+ | +...+..
T Consensus 106 ~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (368)
T 1fch_A 106 TTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES--LQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLG 182 (368)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSTTTGGGCC------------
T ss_pred HHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhccc
Confidence 46677899999999999999886 457889999999999999 99999999987643 2 2222221
Q ss_pred ----HHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHHHH
Q 038429 94 ----LIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYA 165 (258)
Q Consensus 94 ----li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~ 165 (258)
.+..+...|++++|+..|+++.....-.++..++..+...+.+.|++++|...++.. +.+...|..+...|.
T Consensus 183 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 262 (368)
T 1fch_A 183 PSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLA 262 (368)
T ss_dssp ---CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 233344889999999999999444332235778999999999999999999999988 556789999999999
Q ss_pred hcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCC---C-------ChhhHHHHHHHHhc
Q 038429 166 VCGDLAMAYCVFVMIGK--K-DVVSWNSMISGFVEGGFFEKAIELYREMEVENVK---P-------DEVTMVVVLSACAK 232 (258)
Q Consensus 166 ~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~---p-------~~~t~~~li~~~~~ 232 (258)
+.|++++|.+.|+...+ | +...|..+...|...|++++|...|++..+..-. | ...+|..+..++.+
T Consensus 263 ~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 342 (368)
T 1fch_A 263 NGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSM 342 (368)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHH
Confidence 99999999999998753 4 6778999999999999999999999998764211 1 15789999999999
Q ss_pred cCChhHHHHHHHH
Q 038429 233 KRDLEFGIWVSSH 245 (258)
Q Consensus 233 ~g~~~~a~~~~~~ 245 (258)
.|+.++|..+++.
T Consensus 343 ~g~~~~A~~~~~~ 355 (368)
T 1fch_A 343 LGQSDAYGAADAR 355 (368)
T ss_dssp HTCGGGHHHHHTT
T ss_pred hCChHhHHHhHHH
Confidence 9999999998873
No 23
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.46 E-value=8.3e-13 Score=100.80 Aligned_cols=190 Identities=12% Similarity=-0.063 Sum_probs=147.7
Q ss_pred CcchhhhhhhhhhhhccCCCChHHHHHHhccCCC---CChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHH
Q 038429 52 FFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ---PNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLP 128 (258)
Q Consensus 52 ~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~ 128 (258)
+++...+..+-..+.+.| ++++|...|++..+ .+...|..+...+.+.|++++|+..|++..... +.+..++.
T Consensus 2 p~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~ 77 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALG--RYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART--PRYLGGYM 77 (217)
T ss_dssp --CCHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHH
Confidence 567778888888999999 99999999987643 567889999999999999999999999984322 33456788
Q ss_pred HHHHHhcCc-----------CCcchhhhhhhcc----cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhhHHHH
Q 038429 129 FVIKAAARP-----------VQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK--KDVVSWNSM 191 (258)
Q Consensus 129 ~ll~~~~~~-----------~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~l 191 (258)
.+-.++... |++++|...++.. +.+...|..+-..|...|++++|...|++..+ .+...+..+
T Consensus 78 ~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 157 (217)
T 2pl2_A 78 VLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence 888889999 9999999999888 55677899999999999999999999986533 677788999
Q ss_pred HHHHHcCCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHhccCChhHHHHHHHHHH
Q 038429 192 ISGFVEGGFFEKAIELYREMEVENVKP-DEVTMVVVLSACAKKRDLEFGIWVSSHIE 247 (258)
Q Consensus 192 i~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 247 (258)
-..|...|++++|...|++..+. .| +...+..+...+.+.|++++|...+++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 99999999999999999998875 35 56778889999999999999999988754
No 24
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.45 E-value=2.9e-13 Score=108.75 Aligned_cols=214 Identities=7% Similarity=-0.158 Sum_probs=173.6
Q ss_pred cCcccccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC---CChhhHHHH----------
Q 038429 28 RHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ---PNLYTWNTL---------- 94 (258)
Q Consensus 28 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~l---------- 94 (258)
..+...|++++|...+..+.+.. +.+..++..+...+...| ++++|...+++..+ .+...+..+
T Consensus 63 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (327)
T 3cv0_A 63 LTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEH--NANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDL 139 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSTTTTTC--------------
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHH
Confidence 35667899999999999999875 456788999999999999 99999999987643 233333333
Q ss_pred ----HH-HHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHHHH
Q 038429 95 ----IR-AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYA 165 (258)
Q Consensus 95 ----i~-~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~ 165 (258)
.. .+...|++++|...+++. .+.. +.+..++..+...+...|++++|...++.. +.+...+..+...|.
T Consensus 140 ~~~~~~~~~~~~~~~~~A~~~~~~~-~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 217 (327)
T 3cv0_A 140 NVQSEDFFFAAPNEYRECRTLLHAA-LEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLA 217 (327)
T ss_dssp ------CCTTSHHHHHHHHHHHHHH-HHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHcccHHHHHHHHHHH-HhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 22 377788999999999998 4332 336778899999999999999999999988 556789999999999
Q ss_pred hcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-----------ChhhHHHHHHHHh
Q 038429 166 VCGDLAMAYCVFVMIGK--K-DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKP-----------DEVTMVVVLSACA 231 (258)
Q Consensus 166 ~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-----------~~~t~~~li~~~~ 231 (258)
+.|++++|.+.|+...+ | +...|..+...|...|++++|...+++..+..-.. +...+..+..++.
T Consensus 218 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 297 (327)
T 3cv0_A 218 NGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLN 297 (327)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHH
Confidence 99999999999988653 3 67789999999999999999999999987653211 3678899999999
Q ss_pred ccCChhHHHHHHHHH
Q 038429 232 KKRDLEFGIWVSSHI 246 (258)
Q Consensus 232 ~~g~~~~a~~~~~~m 246 (258)
+.|+.++|..++++.
T Consensus 298 ~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 298 VMNRPDLVELTYAQN 312 (327)
T ss_dssp HTTCHHHHHHHTTCC
T ss_pred hcCCHHHHHHHHHHH
Confidence 999999999998753
No 25
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.45 E-value=1e-12 Score=103.12 Aligned_cols=218 Identities=11% Similarity=-0.090 Sum_probs=174.2
Q ss_pred cCcccccchhhHHHHHHHHHhhcc---CcchhhhhhhhhhhhccCCCChHHHHHHhccCCC---CChhhHHHHHHHHhcC
Q 038429 28 RHPHFLTNQKQLKRIHAQMLSTDF---FFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ---PNLYTWNTLIRAYSSS 101 (258)
Q Consensus 28 ~~~~~~~~~~~a~~~~~~m~~~~~---~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~ 101 (258)
......+++++|...++.+.+... +.+..++..+...+...| ++++|...|++..+ .+..+|..+...+...
T Consensus 13 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 90 (275)
T 1xnf_A 13 VPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLG--LRALARNDFSQALAIRPDMPEVFNYLGIYLTQA 90 (275)
T ss_dssp CCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT
T ss_pred eccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc
Confidence 356667999999999999998642 224667889999999999 99999999987653 5688999999999999
Q ss_pred CChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc---cCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 038429 102 DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF---EDDLVISNSLIHFYAVCGDLAMAYCVFV 178 (258)
Q Consensus 102 g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~ 178 (258)
|++++|+..|++..... +.+..++..+...+.+.|++++|...++.. .|+.......+..+...|++++|...+.
T Consensus 91 ~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 168 (275)
T 1xnf_A 91 GNFDAAYEAFDSVLELD--PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLK 168 (275)
T ss_dssp TCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC--ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99999999999984322 335678999999999999999999999998 5555555566666678899999999996
Q ss_pred hcCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCC--C-ChhhHHHHHHHHhccCChhHHHHHHHHHHHcC
Q 038429 179 MIGK--K-DVVSWNSMISGFVEGGFFEKAIELYREMEVENVK--P-DEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250 (258)
Q Consensus 179 ~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 250 (258)
.... | +...+ .+...+...++.++|...+++....... | +...+..+...+.+.|++++|...+++..+..
T Consensus 169 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 169 QHFEKSDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp HHHHHSCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHhcCCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 5532 3 43444 4777788888889999999887654211 1 14678889999999999999999999987653
No 26
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.45 E-value=4.2e-12 Score=101.35 Aligned_cols=207 Identities=9% Similarity=0.006 Sum_probs=126.3
Q ss_pred CcccccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCC----CC-ChhhHHHHHHHHhcCCC
Q 038429 29 HPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIP----QP-NLYTWNTLIRAYSSSDE 103 (258)
Q Consensus 29 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~----~~-~~~~~~~li~~~~~~g~ 103 (258)
++...|+++.|...++. .-.|+..++..+...+...+ +.++|.+.++++. .| +...+..+...+.+.|+
T Consensus 43 ~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~--~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~ 116 (291)
T 3mkr_A 43 AYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS--RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQN 116 (291)
T ss_dssp HHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST--THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTC
T ss_pred HHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC--cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCC
Confidence 44555666666654332 12455566666777777766 7777777776542 13 44455566677777777
Q ss_pred hhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc---cCchhHH---HHHHHHHHhcCCHHHHHHHH
Q 038429 104 PIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF---EDDLVIS---NSLIHFYAVCGDLAMAYCVF 177 (258)
Q Consensus 104 ~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~---~~~~~~~---~~li~~~~~~g~~~~a~~~~ 177 (258)
+++|+..+++ +.+..++..+...+.+.|++++|...++.+ .|+.... ..++..+...|++++|..+|
T Consensus 117 ~~~Al~~l~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~ 189 (291)
T 3mkr_A 117 PDAALRTLHQ-------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIF 189 (291)
T ss_dssp HHHHHHHHTT-------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHH
T ss_pred HHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 7777776653 345566677777777777777777777776 3432211 12223333446777777777
Q ss_pred HhcCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhH-HHHHHHHHHHc
Q 038429 178 VMIGK---KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEF-GIWVSSHIEKN 249 (258)
Q Consensus 178 ~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~-a~~~~~~m~~~ 249 (258)
+++.+ .+...|+.+..++.+.|++++|+..|++..+.. +-+..++..++..+...|+.++ +.++++++.+.
T Consensus 190 ~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 190 QEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 76643 255667777777777777777777777766542 1245566667777777777654 45666666543
No 27
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.45 E-value=4.3e-12 Score=103.00 Aligned_cols=214 Identities=8% Similarity=-0.084 Sum_probs=177.1
Q ss_pred CcccccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC---CChhhHHHHHHHHhcCCChh
Q 038429 29 HPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ---PNLYTWNTLIRAYSSSDEPI 105 (258)
Q Consensus 29 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~ 105 (258)
.+...|++++|...+..+.+.. +.+...+..+...+...| ++++|...|++..+ .+...|..+...+...|+++
T Consensus 12 ~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 88 (359)
T 3ieg_A 12 KLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMG--KSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLD 88 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChH
Confidence 4556789999999999999876 456788999999999999 99999999987653 46788999999999999999
Q ss_pred hHHHHHHHhHhcCCCCC----CcchHHHH------------HHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHHHH
Q 038429 106 QSFMIFLQLVYNSPYFP----NEFTLPFV------------IKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYA 165 (258)
Q Consensus 106 ~a~~~~~~m~~~~~~~p----~~~~~~~l------------l~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~ 165 (258)
+|...|++. .+. .| +...+..+ ...+...|++++|...++.. +.+...+..+...|.
T Consensus 89 ~A~~~~~~~-~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (359)
T 3ieg_A 89 EAEDDFKKV-LKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFI 165 (359)
T ss_dssp HHHHHHHHH-HTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHH-Hhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 999999998 433 34 33444444 57888999999999999998 667789999999999
Q ss_pred hcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCh-hhHH------------HHHHH
Q 038429 166 VCGDLAMAYCVFVMIGK--K-DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDE-VTMV------------VVLSA 229 (258)
Q Consensus 166 ~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~t~~------------~li~~ 229 (258)
..|++++|.+.++...+ | +..+|..+...+...|++++|...|++..+.. |+. ..+. .+...
T Consensus 166 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~ 243 (359)
T 3ieg_A 166 KEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVKKLNKLIESAEE 243 (359)
T ss_dssp HTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--ccchHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998754 3 67889999999999999999999999988753 433 3332 23566
Q ss_pred HhccCChhHHHHHHHHHHHcC
Q 038429 230 CAKKRDLEFGIWVSSHIEKNG 250 (258)
Q Consensus 230 ~~~~g~~~~a~~~~~~m~~~g 250 (258)
+.+.|++++|...+++..+..
T Consensus 244 ~~~~~~~~~A~~~~~~~~~~~ 264 (359)
T 3ieg_A 244 LIRDGRYTDATSKYESVMKTE 264 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHcCCHHHHHHHHHHHHhcC
Confidence 888999999999999987643
No 28
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.44 E-value=3e-12 Score=99.30 Aligned_cols=191 Identities=8% Similarity=-0.075 Sum_probs=152.8
Q ss_pred hhhhhhhhhhhhccCCCChHHHHHHhccCCC---CChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHH
Q 038429 55 PYSASKLFTPCALSTFSSLEYARKMFDQIPQ---PNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVI 131 (258)
Q Consensus 55 ~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll 131 (258)
...+..+...+...| ++++|...|++..+ .+..+|..+...+.+.|++++|...|++..... +.+...+..+.
T Consensus 37 ~~~~~~~a~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la 112 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRG--NTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD--SRNARVLNNYG 112 (252)
T ss_dssp HHHHHHHHHHHHHTT--CTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC--ChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHH
Confidence 456777778888888 89988888887643 467788888889999999999999998873322 23566788888
Q ss_pred HHhcCcCCcchhhhhhhcc-c-----CchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHcCCChH
Q 038429 132 KAAARPVQFRVGQAIHGMF-E-----DDLVISNSLIHFYAVCGDLAMAYCVFVMIGK--K-DVVSWNSMISGFVEGGFFE 202 (258)
Q Consensus 132 ~~~~~~~~~~~a~~~~~~~-~-----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~ 202 (258)
..+...|++++|...++.. . .+...+..+...|.+.|++++|.+.|+...+ | +...+..+...+...|+++
T Consensus 113 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 113 GFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHH
Confidence 8888899999988888776 2 2456788888999999999999999987653 3 5778888999999999999
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHcC
Q 038429 203 KAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250 (258)
Q Consensus 203 ~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 250 (258)
+|..++++..+.. +.+...+..+...+.+.|+.++|.++++++.+..
T Consensus 193 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 193 PARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 9999999887642 3456678888888999999999999999887653
No 29
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.44 E-value=4.7e-12 Score=98.19 Aligned_cols=192 Identities=8% Similarity=-0.056 Sum_probs=161.6
Q ss_pred CcccccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC---CChhhHHHHHHHHhcCCChh
Q 038429 29 HPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ---PNLYTWNTLIRAYSSSDEPI 105 (258)
Q Consensus 29 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~ 105 (258)
.+...|++++|...+..+.+.. +.+...+..+...+...| ++++|...|++..+ .+...|..+...+...|+++
T Consensus 46 ~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~--~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~ 122 (252)
T 2ho1_A 46 GYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEM--EPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYE 122 (252)
T ss_dssp HHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHH
Confidence 5567789999999999998875 446788999999999999 99999999987643 47788999999999999999
Q ss_pred hHHHHHHHhHhcCCCCC-CcchHHHHHHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 038429 106 QSFMIFLQLVYNSPYFP-NEFTLPFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVFVMI 180 (258)
Q Consensus 106 ~a~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 180 (258)
+|...|++. .+.+..| +...+..+...+...|++++|...++.. +.+...+..+...|.+.|++++|.+.|+..
T Consensus 123 ~A~~~~~~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 201 (252)
T 2ho1_A 123 EAYQRLLEA-SQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLF 201 (252)
T ss_dssp HHHHHHHHH-TTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHH-HhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999 4433444 4567888889999999999999999988 556788999999999999999999999987
Q ss_pred CC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHH
Q 038429 181 GK---KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVV 226 (258)
Q Consensus 181 ~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~l 226 (258)
.+ .+...+..+...+...|+.++|.++++++.+. .|+...+..+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~ 248 (252)
T 2ho1_A 202 AQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL--YPGSLEYQEF 248 (252)
T ss_dssp HTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSHHHHHH
T ss_pred HHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCCHHHHHH
Confidence 54 36677888889999999999999999999875 3555544433
No 30
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.44 E-value=8.7e-13 Score=101.55 Aligned_cols=184 Identities=8% Similarity=0.009 Sum_probs=91.9
Q ss_pred CcccccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC---CChhhHHHHHHHHhcCCChh
Q 038429 29 HPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ---PNLYTWNTLIRAYSSSDEPI 105 (258)
Q Consensus 29 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~ 105 (258)
.+...|+++.|..++..+.+.. +.+...+..+...+...| ++++|...|++..+ .+..+|..+...+...|+++
T Consensus 32 ~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 108 (243)
T 2q7f_A 32 RGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVN--ELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYK 108 (243)
T ss_dssp ----------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHH
Confidence 4444555555555555555433 223444444555555555 55555555544321 23444555555555555555
Q ss_pred hHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcccCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---
Q 038429 106 QSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK--- 182 (258)
Q Consensus 106 ~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--- 182 (258)
+|...|++. .+.. +.+...+..+...|.+.|++++|.+.++...+
T Consensus 109 ~A~~~~~~~-~~~~-------------------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 156 (243)
T 2q7f_A 109 EAKDMFEKA-LRAG-------------------------------MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE 156 (243)
T ss_dssp HHHHHHHHH-HHHT-------------------------------CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHH-HHhC-------------------------------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 555555544 2111 23344555556666666666666666655432
Q ss_pred CChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHH
Q 038429 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEK 248 (258)
Q Consensus 183 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 248 (258)
.+...+..+...+...|++++|...+++..+.. +.+..++..+...+.+.|++++|.+.+++..+
T Consensus 157 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 157 NDTEARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 244555566666666666666666666655442 12345566666666666666666666666554
No 31
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.43 E-value=3.8e-12 Score=96.60 Aligned_cols=192 Identities=7% Similarity=-0.076 Sum_probs=139.0
Q ss_pred chhhhhhhhhhhhccCCCChHHHHHHhccCCC---CChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHH
Q 038429 54 DPYSASKLFTPCALSTFSSLEYARKMFDQIPQ---PNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130 (258)
Q Consensus 54 ~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 130 (258)
+...+..+...+...| ++++|...|++..+ .+...|..+...+...|++++|...|++..... +.+..++..+
T Consensus 7 ~~~~~~~~~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l 82 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQ--DYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK--PDSAEINNNY 82 (225)
T ss_dssp HHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCChHHHHHH
Confidence 4556667777777777 88888777776532 456677777777888888888888887773321 2345567777
Q ss_pred HHHhcCc-CCcchhhhhhhcc-c-----CchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHcCCC
Q 038429 131 IKAAARP-VQFRVGQAIHGMF-E-----DDLVISNSLIHFYAVCGDLAMAYCVFVMIGK--K-DVVSWNSMISGFVEGGF 200 (258)
Q Consensus 131 l~~~~~~-~~~~~a~~~~~~~-~-----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~ 200 (258)
...+... |++++|...++.. . .+...+..+...|.+.|++++|.+.|+.+.+ | +...+..+...+...|+
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCC
Confidence 7777777 8888877777766 2 2246777888888888888888888877643 3 56778888888888888
Q ss_pred hHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHc
Q 038429 201 FEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249 (258)
Q Consensus 201 ~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 249 (258)
+++|..++++..+..-..+...+..+...+...|+.+.|..+++.+.+.
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 8888888888776531135566777777778888888888888887654
No 32
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.42 E-value=2.5e-12 Score=109.74 Aligned_cols=214 Identities=7% Similarity=-0.080 Sum_probs=180.4
Q ss_pred cccchhhHHHHHHHHHh-----hcc--------CcchhhhhhhhhhhhccCCCChHHHHHHhccCCC--CChhhHHHHHH
Q 038429 32 FLTNQKQLKRIHAQMLS-----TDF--------FFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ--PNLYTWNTLIR 96 (258)
Q Consensus 32 ~~~~~~~a~~~~~~m~~-----~~~--------~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~li~ 96 (258)
+.|+++.|..+++.+.+ ..- +.+..++..+...+...| ++++|...|++..+ |+..+|..+..
T Consensus 201 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~~l~~~~~~~~~~~l~~ 278 (514)
T 2gw1_A 201 SPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKN--DPLGAHEDIKKAIELFPRVNSYIYMAL 278 (514)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSS--CHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhhCccHHHHHHHHH
Confidence 57999999999999988 311 334567888999999999 99999999987643 44888999999
Q ss_pred HHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhcCCHHH
Q 038429 97 AYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAM 172 (258)
Q Consensus 97 ~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~ 172 (258)
.+...|++++|+..++.. .+.. +.+..++..+...+...|++++|...++.. +.+...+..+...|.+.|++++
T Consensus 279 ~~~~~~~~~~A~~~~~~~-~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 356 (514)
T 2gw1_A 279 IMADRNDSTEYYNYFDKA-LKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDD 356 (514)
T ss_dssp HHHTSSCCTTGGGHHHHH-HTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHH
T ss_pred HHHHCCCHHHHHHHHHHH-hhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999998 4432 345678899999999999999999999988 5567899999999999999999
Q ss_pred HHHHHHhcCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCC-CCC----hhhHHHHHHHHhc---cCChhHHHH
Q 038429 173 AYCVFVMIGK--K-DVVSWNSMISGFVEGGFFEKAIELYREMEVENV-KPD----EVTMVVVLSACAK---KRDLEFGIW 241 (258)
Q Consensus 173 a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~----~~t~~~li~~~~~---~g~~~~a~~ 241 (258)
|.+.|+.+.+ | +...|..+...+...|++++|...++++....- .++ ...+..+...+.. .|++++|..
T Consensus 357 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~ 436 (514)
T 2gw1_A 357 CETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATN 436 (514)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHH
T ss_pred HHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHH
Confidence 9999988754 3 677899999999999999999999999876421 122 3388999999999 999999999
Q ss_pred HHHHHHHc
Q 038429 242 VSSHIEKN 249 (258)
Q Consensus 242 ~~~~m~~~ 249 (258)
.+++..+.
T Consensus 437 ~~~~a~~~ 444 (514)
T 2gw1_A 437 LLEKASKL 444 (514)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998765
No 33
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.40 E-value=1.4e-11 Score=100.04 Aligned_cols=217 Identities=10% Similarity=-0.064 Sum_probs=172.6
Q ss_pred cCcccccchhhHHHHHHHHHhhccC--cchhhhhhh------------hhhhhccCCCChHHHHHHhccCCC---CChhh
Q 038429 28 RHPHFLTNQKQLKRIHAQMLSTDFF--FDPYSASKL------------FTPCALSTFSSLEYARKMFDQIPQ---PNLYT 90 (258)
Q Consensus 28 ~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~~l------------i~~~~~~~~~~~~~a~~~~~~m~~---~~~~~ 90 (258)
..+...|++++|...+..+.+.... .+...+..+ ...+...| ++++|...+++..+ .+...
T Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~ 156 (359)
T 3ieg_A 79 HLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGA--DYTAAITFLDKILEVCVWDAEL 156 (359)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhCCCchHH
Confidence 3566778999999999988876420 244455444 57788888 99999999987643 57788
Q ss_pred HHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc----cCchhHHH--------
Q 038429 91 WNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF----EDDLVISN-------- 158 (258)
Q Consensus 91 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~-------- 158 (258)
+..+...+...|++++|+..++.. .+. .+.+..++..+...+...|++++|...++.. +.+...+.
T Consensus 157 ~~~~~~~~~~~~~~~~A~~~~~~~-~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 234 (359)
T 3ieg_A 157 RELRAECFIKEGEPRKAISDLKAA-SKL-KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKL 234 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-HTT-CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHH-HHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHH
Confidence 999999999999999999999998 443 2456778899999999999999999999888 33334433
Q ss_pred ----HHHHHHHhcCCHHHHHHHHHhcCC--CCh-----hhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHH
Q 038429 159 ----SLIHFYAVCGDLAMAYCVFVMIGK--KDV-----VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVL 227 (258)
Q Consensus 159 ----~li~~~~~~g~~~~a~~~~~~m~~--~~~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li 227 (258)
.+...+.+.|++++|.+.|+...+ |+. ..+..+...+...|++++|...+++..+.. +.+..++..+.
T Consensus 235 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~ 313 (359)
T 3ieg_A 235 NKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRA 313 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 236678899999999999987754 432 235557788999999999999999988752 23677899999
Q ss_pred HHHhccCChhHHHHHHHHHHHc
Q 038429 228 SACAKKRDLEFGIWVSSHIEKN 249 (258)
Q Consensus 228 ~~~~~~g~~~~a~~~~~~m~~~ 249 (258)
..+.+.|++++|.+.+++..+.
T Consensus 314 ~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 314 EAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHHHHhc
Confidence 9999999999999999998765
No 34
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.39 E-value=1.1e-11 Score=94.05 Aligned_cols=193 Identities=14% Similarity=-0.009 Sum_probs=160.8
Q ss_pred CcccccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC---CChhhHHHHHHHHhcC-CCh
Q 038429 29 HPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ---PNLYTWNTLIRAYSSS-DEP 104 (258)
Q Consensus 29 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~-g~~ 104 (258)
.+...|++++|...+..+.+.. +.+...+..+...+...| ++++|...+++..+ .+..+|..+...+... |++
T Consensus 17 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 93 (225)
T 2vq2_A 17 EYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLK--VNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRP 93 (225)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCH
T ss_pred HHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcC--ChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcH
Confidence 5567899999999999998875 446788999999999999 99999999987643 5678899999999999 999
Q ss_pred hhHHHHHHHhHhcCCCCCC-cchHHHHHHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 038429 105 IQSFMIFLQLVYNSPYFPN-EFTLPFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVFVM 179 (258)
Q Consensus 105 ~~a~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 179 (258)
++|+..++++ .+.+..|+ ...+..+..++...|++++|...++.. +.+...+..+...|.+.|++++|.+.|+.
T Consensus 94 ~~A~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 172 (225)
T 2vq2_A 94 AESMAYFDKA-LADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKK 172 (225)
T ss_dssp HHHHHHHHHH-HTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHH-HcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999 44333333 567888999999999999999999888 55678899999999999999999999987
Q ss_pred cCC----CChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHH
Q 038429 180 IGK----KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVL 227 (258)
Q Consensus 180 m~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li 227 (258)
..+ .+...+..+...+...|+.++|..+++.+.+. .|+......++
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~l 222 (225)
T 2vq2_A 173 YQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN--FPYSEELQTVL 222 (225)
T ss_dssp HHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHh
Confidence 653 46667888888889999999999999998764 36655544443
No 35
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.39 E-value=1.5e-11 Score=96.36 Aligned_cols=216 Identities=8% Similarity=-0.079 Sum_probs=172.8
Q ss_pred CcccccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC--CCh----hhHHHHHHHHhcCC
Q 038429 29 HPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ--PNL----YTWNTLIRAYSSSD 102 (258)
Q Consensus 29 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~--~~~----~~~~~li~~~~~~g 102 (258)
.+...|+++.|...+..+.+.. +.+...+..+..++...| ++++|...+++..+ ++. .+|..+...+...|
T Consensus 12 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~--~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~ 88 (272)
T 3u4t_A 12 FLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELA--KYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKG 88 (272)
T ss_dssp HHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTT--CHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHh--hHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcc
Confidence 4556789999999999999875 345668888999999999 99999999986643 222 34899999999999
Q ss_pred ChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 038429 103 EPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVFV 178 (258)
Q Consensus 103 ~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~ 178 (258)
++++|+..|+...... +.+..++..+...+...|++++|...++.. +.+...|..+...+...+++++|.+.|+
T Consensus 89 ~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 166 (272)
T 3u4t_A 89 QDSLAIQQYQAAVDRD--TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFV 166 (272)
T ss_dssp CHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999984322 335578999999999999999999999988 5566677777734444569999999998
Q ss_pred hcCC--C-ChhhHHHHHHHHHcCCC---hHHHHHHHHHHHHcC-CCCCh------hhHHHHHHHHhccCChhHHHHHHHH
Q 038429 179 MIGK--K-DVVSWNSMISGFVEGGF---FEKAIELYREMEVEN-VKPDE------VTMVVVLSACAKKRDLEFGIWVSSH 245 (258)
Q Consensus 179 ~m~~--~-~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~-~~p~~------~t~~~li~~~~~~g~~~~a~~~~~~ 245 (258)
...+ | +...+..+...+...|+ +++|...+++..+.. -.|+. ..|..+...|.+.|++++|.+.+++
T Consensus 167 ~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 246 (272)
T 3u4t_A 167 KVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKN 246 (272)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8764 4 46677777788887787 888999998877642 22442 5788888999999999999999999
Q ss_pred HHHc
Q 038429 246 IEKN 249 (258)
Q Consensus 246 m~~~ 249 (258)
..+.
T Consensus 247 al~~ 250 (272)
T 3u4t_A 247 ILAL 250 (272)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8765
No 36
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.38 E-value=1.3e-11 Score=106.11 Aligned_cols=215 Identities=10% Similarity=-0.019 Sum_probs=178.8
Q ss_pred CcccccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC---CChhhHHHHHHHHhcCCChh
Q 038429 29 HPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ---PNLYTWNTLIRAYSSSDEPI 105 (258)
Q Consensus 29 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~ 105 (258)
.+...|+++.|...+..+.+.. |+...+..+...+...| ++++|...|++..+ .+..+|..+...+...|+++
T Consensus 252 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 327 (537)
T 3fp2_A 252 FHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKE--NSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYK 327 (537)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSS--CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhc--CHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHH
Confidence 4556688999999999999865 55788999999999999 99999999987643 56788999999999999999
Q ss_pred hHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 038429 106 QSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIG 181 (258)
Q Consensus 106 ~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 181 (258)
+|+..|++..... +.+..++..+...+...|++++|...++.. +.+...+..+...|.+.|++++|.+.|+...
T Consensus 328 ~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 405 (537)
T 3fp2_A 328 NAKEDFQKAQSLN--PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAK 405 (537)
T ss_dssp HHHHHHHHHHHHC--TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999999984332 334678899999999999999999999988 5667799999999999999999999998875
Q ss_pred C--C-------ChhhHHHHHHHHHcC----------CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHH
Q 038429 182 K--K-------DVVSWNSMISGFVEG----------GFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWV 242 (258)
Q Consensus 182 ~--~-------~~~~~~~li~~~~~~----------g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~ 242 (258)
+ | ....+..+...+... |++++|...|++..+.. +.+...+..+...+.+.|++++|.+.
T Consensus 406 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~ 484 (537)
T 3fp2_A 406 RLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIEL 484 (537)
T ss_dssp HHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHH
Confidence 3 1 222244445566666 99999999999988753 23567899999999999999999999
Q ss_pred HHHHHHcC
Q 038429 243 SSHIEKNG 250 (258)
Q Consensus 243 ~~~m~~~g 250 (258)
+++..+..
T Consensus 485 ~~~al~~~ 492 (537)
T 3fp2_A 485 FEDSAILA 492 (537)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhC
Confidence 99987653
No 37
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.38 E-value=3.2e-12 Score=98.34 Aligned_cols=152 Identities=13% Similarity=0.018 Sum_probs=116.0
Q ss_pred cCcccccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC---CChhhHHHHHHHHhcCCCh
Q 038429 28 RHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ---PNLYTWNTLIRAYSSSDEP 104 (258)
Q Consensus 28 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~ 104 (258)
..+...|++++|...+..+.+.. +.+...+..+...+...| ++++|...+++..+ .+...|..+...+.+.|++
T Consensus 65 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 141 (243)
T 2q7f_A 65 NLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVKE--MYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQP 141 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHhc--cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccH
Confidence 36677899999999999998876 446788999999999999 99999999987643 5778899999999999999
Q ss_pred hhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcccCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--
Q 038429 105 IQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK-- 182 (258)
Q Consensus 105 ~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-- 182 (258)
++|...+++..... |+ +...+..+...|.+.|++++|.+.|+...+
T Consensus 142 ~~A~~~~~~~~~~~---~~-----------------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 189 (243)
T 2q7f_A 142 KLALPYLQRAVELN---EN-----------------------------DTEARFQFGMCLANEGMLDEALSQFAAVTEQD 189 (243)
T ss_dssp HHHHHHHHHHHHHC---TT-----------------------------CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhC---Cc-----------------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999883321 11 233455566666677777777777765532
Q ss_pred -CChhhHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 038429 183 -KDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214 (258)
Q Consensus 183 -~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 214 (258)
.+..+|..+...|...|++++|...+++..+.
T Consensus 190 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 190 PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 24566777777777777777777777777664
No 38
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.36 E-value=2.1e-11 Score=104.73 Aligned_cols=156 Identities=9% Similarity=-0.013 Sum_probs=130.5
Q ss_pred hHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHHHH
Q 038429 90 TWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYA 165 (258)
Q Consensus 90 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~ 165 (258)
+|..+...+...|++++|...|+.. .+. .|+..++..+...+...|++++|...++.. +.+..+|..+...|.
T Consensus 245 ~~~~~g~~~~~~~~~~~A~~~~~~~-~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 321 (537)
T 3fp2_A 245 ALCYTGIFHFLKNNLLDAQVLLQES-INL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYF 321 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-HHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHH-Hhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 3555667777888999999999888 332 355778888999999999999999999888 566788999999999
Q ss_pred hcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHH
Q 038429 166 VCGDLAMAYCVFVMIGK--K-DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWV 242 (258)
Q Consensus 166 ~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~ 242 (258)
..|++++|.+.|+...+ | +...|..+...+...|++++|..++++..+.. +.+...+..+...+...|++++|...
T Consensus 322 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 400 (537)
T 3fp2_A 322 ILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQ 400 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 99999999999987753 3 56788999999999999999999999988763 23456888899999999999999999
Q ss_pred HHHHHHc
Q 038429 243 SSHIEKN 249 (258)
Q Consensus 243 ~~~m~~~ 249 (258)
+++..+.
T Consensus 401 ~~~a~~~ 407 (537)
T 3fp2_A 401 YDIAKRL 407 (537)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 9988654
No 39
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.36 E-value=9.7e-11 Score=92.11 Aligned_cols=210 Identities=12% Similarity=-0.024 Sum_probs=177.2
Q ss_pred CcccccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhc----cCCCChHHHHHHhccCCC-CChhhHHHHHHHHhc---
Q 038429 29 HPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCAL----STFSSLEYARKMFDQIPQ-PNLYTWNTLIRAYSS--- 100 (258)
Q Consensus 29 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~~~a~~~~~~m~~-~~~~~~~~li~~~~~--- 100 (258)
.+...+++++|...|....+.+ +...+..+-..|.. .+ ++++|...|++..+ .+..++..+...|..
T Consensus 15 ~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~--~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~ 89 (273)
T 1ouv_A 15 KSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEK--NLKKAASFYAKACDLNYSNGCHLLGNLYYSGQG 89 (273)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSS
T ss_pred HHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCC
Confidence 4456689999999999998843 45677778888888 88 99999999987643 578889999999999
Q ss_pred -CCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcC----cCCcchhhhhhhcc--cCchhHHHHHHHHHHh----cCC
Q 038429 101 -SDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAAR----PVQFRVGQAIHGMF--EDDLVISNSLIHFYAV----CGD 169 (258)
Q Consensus 101 -~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~--~~~~~~~~~li~~~~~----~g~ 169 (258)
.+++++|+..|++. .+.+ +..++..+-..+.. .+++++|...++.. ..+...+..+-..|.. .++
T Consensus 90 ~~~~~~~A~~~~~~a-~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~ 165 (273)
T 1ouv_A 90 VSQNTNKALQYYSKA-CDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKD 165 (273)
T ss_dssp SCCCHHHHHHHHHHH-HHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCC
T ss_pred cccCHHHHHHHHHHH-HHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCC
Confidence 99999999999998 5544 66788888888888 89999999999988 4567788888888988 999
Q ss_pred HHHHHHHHHhcCC-CChhhHHHHHHHHHc----CCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhc----cCChhHHH
Q 038429 170 LAMAYCVFVMIGK-KDVVSWNSMISGFVE----GGFFEKAIELYREMEVENVKPDEVTMVVVLSACAK----KRDLEFGI 240 (258)
Q Consensus 170 ~~~a~~~~~~m~~-~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~----~g~~~~a~ 240 (258)
+++|.+.|+...+ .+...+..+-..|.. .+++++|+..|++..+.+ +...+..+-..|.+ .+++++|.
T Consensus 166 ~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~ 242 (273)
T 1ouv_A 166 LKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAI 242 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHH
Confidence 9999999987654 366778888888888 999999999999988864 26678888888888 99999999
Q ss_pred HHHHHHHHcC
Q 038429 241 WVSSHIEKNG 250 (258)
Q Consensus 241 ~~~~~m~~~g 250 (258)
+.+++..+.|
T Consensus 243 ~~~~~a~~~~ 252 (273)
T 1ouv_A 243 ENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHcC
Confidence 9999988776
No 40
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.36 E-value=1.3e-10 Score=93.25 Aligned_cols=207 Identities=12% Similarity=-0.011 Sum_probs=166.5
Q ss_pred hhHHHHHHHHHhhccCcchhhhhhhhhhhhc-------cCCCCh-------HHHHHHhccCCC----CChhhHHHHHHHH
Q 038429 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCAL-------STFSSL-------EYARKMFDQIPQ----PNLYTWNTLIRAY 98 (258)
Q Consensus 37 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-------~~~~~~-------~~a~~~~~~m~~----~~~~~~~~li~~~ 98 (258)
++|..+|+.++... +.++..|..+...+.. .| ++ ++|..+|++..+ .+...|..+...+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g--~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKG--DMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTS--CCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhcc--chhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 68888999998875 5577788887777653 47 76 899999986533 3566899999999
Q ss_pred hcCCChhhHHHHHHHhHhcCCCCCCc-c-hHHHHHHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHHHH-hcCCHH
Q 038429 99 SSSDEPIQSFMIFLQLVYNSPYFPNE-F-TLPFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYA-VCGDLA 171 (258)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~~~~~p~~-~-~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~-~~g~~~ 171 (258)
.+.|++++|..+|++. .+ +.|+. . +|..+...+.+.|++++|..+|+.. +.+...|........ ..|+.+
T Consensus 110 ~~~~~~~~A~~~~~~a-l~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRL-LA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp HHTTCHHHHHHHHHHH-HT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHH
T ss_pred HhcCCHHHHHHHHHHH-Hh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHH
Confidence 9999999999999998 43 44553 3 7999999999999999999999998 344445544433322 369999
Q ss_pred HHHHHHHhcCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcC-CCCC--hhhHHHHHHHHhccCChhHHHHHHHH
Q 038429 172 MAYCVFVMIGK--K-DVVSWNSMISGFVEGGFFEKAIELYREMEVEN-VKPD--EVTMVVVLSACAKKRDLEFGIWVSSH 245 (258)
Q Consensus 172 ~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~ 245 (258)
+|.++|+...+ | +...|..++..+.+.|+.++|..+|++..... +.|+ ...|..++....+.|+.+.|..++++
T Consensus 187 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 187 VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999998754 4 67889999999999999999999999999863 5664 45788889999999999999999999
Q ss_pred HHHc
Q 038429 246 IEKN 249 (258)
Q Consensus 246 m~~~ 249 (258)
+.+.
T Consensus 267 a~~~ 270 (308)
T 2ond_A 267 RFTA 270 (308)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8765
No 41
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.30 E-value=6.4e-11 Score=90.26 Aligned_cols=160 Identities=9% Similarity=-0.107 Sum_probs=140.4
Q ss_pred CChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc----cCchhHHHHHH
Q 038429 86 PNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLI 161 (258)
Q Consensus 86 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li 161 (258)
++...+..+...+.+.|++++|+..|++. .+.. +.+...+..+-.++.+.|++++|...++.. +.+...+..+-
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~a-l~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERA-LKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHH-HTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 46678889999999999999999999998 4332 345678889999999999999999999988 55677899999
Q ss_pred HHHHhc-----------CCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHH
Q 038429 162 HFYAVC-----------GDLAMAYCVFVMIGK--K-DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVL 227 (258)
Q Consensus 162 ~~~~~~-----------g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li 227 (258)
..|.+. |++++|...|+...+ | +...|..+-..+...|++++|+..|++..+.. .+...+..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 999999 999999999988754 5 66788899999999999999999999999887 6788899999
Q ss_pred HHHhccCChhHHHHHHHHHHHc
Q 038429 228 SACAKKRDLEFGIWVSSHIEKN 249 (258)
Q Consensus 228 ~~~~~~g~~~~a~~~~~~m~~~ 249 (258)
..+...|++++|...+++..+.
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~ 180 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQ 180 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999998764
No 42
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.28 E-value=4.4e-11 Score=98.96 Aligned_cols=213 Identities=7% Similarity=-0.010 Sum_probs=173.9
Q ss_pred CcccccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCC-hHHHHHHhccCCC---CChhhHHHHHHHHhcCCCh
Q 038429 29 HPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSS-LEYARKMFDQIPQ---PNLYTWNTLIRAYSSSDEP 104 (258)
Q Consensus 29 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~-~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~ 104 (258)
.+...|+.++|...++.+++.. +-+...|+.+-.++...| + +++|...|++..+ .+...|+.+-..+.+.|++
T Consensus 106 ~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g--~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~ 182 (382)
T 2h6f_A 106 VLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQ--KDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDP 182 (382)
T ss_dssp HHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT--CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcc--cCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCH
Confidence 3445688999999999999876 446788999999999998 8 9999999998754 5778999999999999999
Q ss_pred hhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHHHHh-cCCHHHH-----H
Q 038429 105 IQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAV-CGDLAMA-----Y 174 (258)
Q Consensus 105 ~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~-~g~~~~a-----~ 174 (258)
++|+..|++..... +-+..+|..+-.++.+.|++++|...++.. +.+...|+.+..+|.+ .|..++| .
T Consensus 183 ~eAl~~~~kal~ld--P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el 260 (382)
T 2h6f_A 183 SQELEFIADILNQD--AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREV 260 (382)
T ss_dssp TTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHH
Confidence 99999999984322 345678999999999999999999999998 6677899999999999 6665777 4
Q ss_pred HHHHhcCC--C-ChhhHHHHHHHHHcCC--ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccC---------ChhHHH
Q 038429 175 CVFVMIGK--K-DVVSWNSMISGFVEGG--FFEKAIELYREMEVENVKPDEVTMVVVLSACAKKR---------DLEFGI 240 (258)
Q Consensus 175 ~~~~~m~~--~-~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g---------~~~~a~ 240 (258)
+.|+...+ | +...|+.+...+...| +.++|++.++++ ..-..+...+..+...|.+.| .+++|.
T Consensus 261 ~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~--~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~ 338 (382)
T 2h6f_A 261 QYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL--QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKAL 338 (382)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH--TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh--ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHH
Confidence 66765543 4 6778999998898888 689999999887 222334567888999998864 358999
Q ss_pred HHHHHH-HH
Q 038429 241 WVSSHI-EK 248 (258)
Q Consensus 241 ~~~~~m-~~ 248 (258)
++++++ .+
T Consensus 339 ~~~~~l~~~ 347 (382)
T 2h6f_A 339 ELCEILAKE 347 (382)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 999998 44
No 43
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.26 E-value=3.6e-11 Score=94.13 Aligned_cols=207 Identities=11% Similarity=-0.062 Sum_probs=162.6
Q ss_pred CccCcccccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC---CChhhHHHHHHHHhcCC
Q 038429 26 HQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ---PNLYTWNTLIRAYSSSD 102 (258)
Q Consensus 26 ~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g 102 (258)
+...+...|++++|...+..+.+.. +.+..++..+...+...| ++++|...|++..+ .+..+|..+...+.+.|
T Consensus 49 l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g 125 (275)
T 1xnf_A 49 RGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAG--NFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGG 125 (275)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHcc--CHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhc
Confidence 3346677899999999999999876 446889999999999999 99999999987753 46788999999999999
Q ss_pred ChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 038429 103 EPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVFV 178 (258)
Q Consensus 103 ~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~ 178 (258)
++++|...|+++.. ..|+.......+..+...|++++|...+... +++...+ .+...+...++.++|.+.+.
T Consensus 126 ~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~ 201 (275)
T 1xnf_A 126 RDKLAQDDLLAFYQ---DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGW-NIVEFYLGNISEQTLMERLK 201 (275)
T ss_dssp CHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHH-HHHHHHTTSSCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHH-HHHHHHHHhcCHHHHHHHHH
Confidence 99999999999843 2355555555666667779999999999766 4444444 47778888899999999999
Q ss_pred hcCCCC-------hhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHH
Q 038429 179 MIGKKD-------VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVS 243 (258)
Q Consensus 179 ~m~~~~-------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~ 243 (258)
...+.+ ...|..+...|...|++++|...|++.... .|+. +.....++...|++++|.+-+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 202 ADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 887632 478889999999999999999999998875 3533 223355667778888887665
No 44
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.26 E-value=3e-11 Score=102.91 Aligned_cols=202 Identities=9% Similarity=-0.041 Sum_probs=167.3
Q ss_pred hhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCCh-HHHHHHhccCCC---CChhhHHHHHHHHhcCCChhhHHHHH
Q 038429 36 QKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSL-EYARKMFDQIPQ---PNLYTWNTLIRAYSSSDEPIQSFMIF 111 (258)
Q Consensus 36 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~-~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~ 111 (258)
++.+.+.+....... ..+...+..+-..+...| ++ ++|...|++..+ .+..+|..+...|.+.|++++|+..|
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g--~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTP--DYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSS--SCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 445555555544433 346778888889999999 99 999999987643 46789999999999999999999999
Q ss_pred HHhHhcCCCCCCcchHHHHHHHhcCc---------CCcchhhhhhhcc----cCchhHHHHHHHHHHhc--------CCH
Q 038429 112 LQLVYNSPYFPNEFTLPFVIKAAARP---------VQFRVGQAIHGMF----EDDLVISNSLIHFYAVC--------GDL 170 (258)
Q Consensus 112 ~~m~~~~~~~p~~~~~~~ll~~~~~~---------~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~--------g~~ 170 (258)
++. .+. .|+..++..+...+... |++++|...++.. +.+...|..+..+|... |++
T Consensus 161 ~~a-l~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGA-LTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHH-HTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHH-Hhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 998 443 37778889999999999 9999999999988 66678999999999999 999
Q ss_pred HHHHHHHHhcCC--C----ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHhccCChhHHHHHH
Q 038429 171 AMAYCVFVMIGK--K----DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKP-DEVTMVVVLSACAKKRDLEFGIWVS 243 (258)
Q Consensus 171 ~~a~~~~~~m~~--~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~ 243 (258)
++|.+.|+...+ | +...|..+-..|...|++++|...|++..+. .| +...+..+...+...|++++|.+.+
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL--DPAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999987753 4 6778999999999999999999999998875 34 4556888888899999999988755
Q ss_pred HH
Q 038429 244 SH 245 (258)
Q Consensus 244 ~~ 245 (258)
..
T Consensus 316 ~~ 317 (474)
T 4abn_A 316 GK 317 (474)
T ss_dssp TT
T ss_pred cc
Confidence 43
No 45
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.26 E-value=3.4e-10 Score=83.53 Aligned_cols=160 Identities=9% Similarity=-0.133 Sum_probs=101.3
Q ss_pred ChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc----cCchhHHHHHHH
Q 038429 87 NLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIH 162 (258)
Q Consensus 87 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~ 162 (258)
++..|..+-..|.+.|++++|+..|++..+.. +-+..++..+..++.+.|+++.|...+... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD--PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 34456666666666666666666666552221 123445555566666666666666555555 344556666667
Q ss_pred HHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHH
Q 038429 163 FYAVCGDLAMAYCVFVMIGK--K-DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFG 239 (258)
Q Consensus 163 ~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a 239 (258)
.+...++++.|.+.+....+ | +...+..+-..|...|++++|+..|++..+.. +-+...|..+...+.+.|++++|
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHH
Confidence 77777777777777765542 2 55667777777777777888877777776642 22455677777777777888888
Q ss_pred HHHHHHHHHc
Q 038429 240 IWVSSHIEKN 249 (258)
Q Consensus 240 ~~~~~~m~~~ 249 (258)
.+.|++..+.
T Consensus 161 ~~~~~~al~~ 170 (184)
T 3vtx_A 161 VKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 8777776653
No 46
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.25 E-value=3.8e-10 Score=88.24 Aligned_cols=190 Identities=9% Similarity=-0.007 Sum_probs=150.9
Q ss_pred hhhhhhhhhhhhccCCCChHHHHHHhccCCC---CChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCc--chHHH
Q 038429 55 PYSASKLFTPCALSTFSSLEYARKMFDQIPQ---PNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNE--FTLPF 129 (258)
Q Consensus 55 ~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~ 129 (258)
+..+-.....+...| ++++|...|++..+ .+...|..+...+.+.|++++|+..|++. .+.+-.|+. .+|..
T Consensus 3 ~~~~~~~a~~~~~~~--~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a-~~~~~~~~~~~~~~~~ 79 (272)
T 3u4t_A 3 DDVEFRYADFLFKNN--NYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETY-FSKVNATKAKSADFEY 79 (272)
T ss_dssp --CHHHHHHHHHTTT--CHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHH-HTTSCTTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhc--CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHH-HhccCchhHHHHHHHH
Confidence 344556667788888 99999999987643 45668999999999999999999999999 443322222 23889
Q ss_pred HHHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHcCCChH
Q 038429 130 VIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK--K-DVVSWNSMISGFVEGGFFE 202 (258)
Q Consensus 130 ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~ 202 (258)
+...+...|++++|...++.. +.+...|..+...|...|++++|.+.|++..+ | +...|..+...+...++++
T Consensus 80 lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 80 YGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988 56678999999999999999999999998875 4 5566766662444456999
Q ss_pred HHHHHHHHHHHcCCCCC-hhhHHHHHHHHhccCC---hhHHHHHHHHHHHc
Q 038429 203 KAIELYREMEVENVKPD-EVTMVVVLSACAKKRD---LEFGIWVSSHIEKN 249 (258)
Q Consensus 203 ~a~~~~~~m~~~~~~p~-~~t~~~li~~~~~~g~---~~~a~~~~~~m~~~ 249 (258)
+|...|++..+. .|+ ...+..+...+...|+ .++|...+++..+.
T Consensus 160 ~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 208 (272)
T 3u4t_A 160 KADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEV 208 (272)
T ss_dssp HHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHH
Confidence 999999998875 344 5677778888888888 88899888887643
No 47
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.22 E-value=4e-11 Score=95.48 Aligned_cols=219 Identities=11% Similarity=-0.021 Sum_probs=114.3
Q ss_pred ccCcccccchhhHHHHHHHHHhh-------ccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC-----------CCh
Q 038429 27 QRHPHFLTNQKQLKRIHAQMLST-------DFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ-----------PNL 88 (258)
Q Consensus 27 ~~~~~~~~~~~~a~~~~~~m~~~-------~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~-----------~~~ 88 (258)
...+...|++++|..++..+.+. .......++..+...+...| ++++|...+++..+ ...
T Consensus 34 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~ 111 (311)
T 3nf1_A 34 VIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQN--KYKDAANLLNDALAIREKTLGKDHPAVA 111 (311)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHhCCCChHHH
Confidence 33555566666666666666653 22233445566666666666 66666666654421 123
Q ss_pred hhHHHHHHHHhcCCChhhHHHHHHHhHhcC-----CCCC-CcchHHHHHHHhcCcCCcchhhhhhhcc------------
Q 038429 89 YTWNTLIRAYSSSDEPIQSFMIFLQLVYNS-----PYFP-NEFTLPFVIKAAARPVQFRVGQAIHGMF------------ 150 (258)
Q Consensus 89 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~------------ 150 (258)
.+|..+...+...|++++|...|++..... +-.| ...++..+...+...|++++|...++..
T Consensus 112 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 191 (311)
T 3nf1_A 112 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDD 191 (311)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTC
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 456666666666666666666666652211 1111 2334555556666666666666555555
Q ss_pred cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----------C-------ChhhHHHHHHHHHcCCChHHHHHHHHHHH
Q 038429 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK-----------K-------DVVSWNSMISGFVEGGFFEKAIELYREME 212 (258)
Q Consensus 151 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----------~-------~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 212 (258)
+....++..+...|.+.|++++|.+.|++..+ + ....+..+...+...+.+.++...++...
T Consensus 192 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 271 (311)
T 3nf1_A 192 PNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACK 271 (311)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-------
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcC
Confidence 00123455556666666666666666655432 0 01112222222233333444444444333
Q ss_pred HcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHH
Q 038429 213 VENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEK 248 (258)
Q Consensus 213 ~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 248 (258)
.. -..+..++..+...|.+.|++++|.+++++..+
T Consensus 272 ~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 272 VD-SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ---CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CC-CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 22 112346788999999999999999999998765
No 48
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.21 E-value=4.1e-10 Score=82.40 Aligned_cols=159 Identities=9% Similarity=0.001 Sum_probs=110.9
Q ss_pred hhhhhhhhhhhccCCCChHHHHHHhccCCC---CChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHH
Q 038429 56 YSASKLFTPCALSTFSSLEYARKMFDQIPQ---PNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132 (258)
Q Consensus 56 ~~~~~li~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~ 132 (258)
..+..+...+...| ++++|...|++..+ .+..++..+...+...|++++|...++......
T Consensus 9 ~~~~~~~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------------- 72 (186)
T 3as5_A 9 VYYRDKGISHAKAG--RYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-------------- 72 (186)
T ss_dssp HHHHHHHHHHHHHT--CHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHhc--CHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------------
Confidence 34555666666667 77777777776654 345666677777777777777777777662211
Q ss_pred HhcCcCCcchhhhhhhcccCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHcCCChHHHHHHHH
Q 038429 133 AAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK---KDVVSWNSMISGFVEGGFFEKAIELYR 209 (258)
Q Consensus 133 ~~~~~~~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~ 209 (258)
+.+...+..+...|...|++++|.+.|+...+ .+...+..+...+...|++++|..+++
T Consensus 73 ------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 134 (186)
T 3as5_A 73 ------------------PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFK 134 (186)
T ss_dssp ------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ------------------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 22345566677777778888888888876543 356677777788888888888888888
Q ss_pred HHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHc
Q 038429 210 EMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249 (258)
Q Consensus 210 ~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 249 (258)
+..+.. +.+...+..+...+...|++++|...+++..+.
T Consensus 135 ~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 135 IALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 877653 234567788888888888888888888877653
No 49
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.19 E-value=2.8e-10 Score=83.96 Aligned_cols=162 Identities=9% Similarity=-0.017 Sum_probs=135.7
Q ss_pred cchhhhhhhhhhhhccCCCChHHHHHHhccCCC---CChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHH
Q 038429 53 FDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ---PNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPF 129 (258)
Q Consensus 53 ~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ 129 (258)
-++.+|..+-..+.+.| ++++|...|++..+ .+..+|..+...|.+.|++++|+..+... .... +-+...+..
T Consensus 3 e~~~iy~~lG~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~~~ 78 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKG--DFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKF-VVLD-TTSAEAYYI 78 (184)
T ss_dssp -CHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHC-CCCHHHHHH
T ss_pred cHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH-HhcC-chhHHHHHH
Confidence 36778999999999999 99999999987643 57788999999999999999999999888 3322 234556777
Q ss_pred HHHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHcCCChH
Q 038429 130 VIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK--K-DVVSWNSMISGFVEGGFFE 202 (258)
Q Consensus 130 ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~ 202 (258)
+...+...++++.+...+... +.+...+..+-..|.+.|++++|.+.|++..+ | +...|..+-..|.+.|+++
T Consensus 79 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 79 LGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 778888899999999888887 66678899999999999999999999987754 4 6778999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCh
Q 038429 203 KAIELYREMEVENVKPDE 220 (258)
Q Consensus 203 ~a~~~~~~m~~~~~~p~~ 220 (258)
+|+..|++..+. .|+.
T Consensus 159 ~A~~~~~~al~~--~p~~ 174 (184)
T 3vtx_A 159 EAVKYFKKALEK--EEKK 174 (184)
T ss_dssp HHHHHHHHHHHT--THHH
T ss_pred HHHHHHHHHHhC--CccC
Confidence 999999998764 3543
No 50
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.18 E-value=1e-09 Score=80.26 Aligned_cols=151 Identities=12% Similarity=0.073 Sum_probs=112.9
Q ss_pred CcccccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC---CChhhHHHHHHHHhcCCChh
Q 038429 29 HPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ---PNLYTWNTLIRAYSSSDEPI 105 (258)
Q Consensus 29 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~ 105 (258)
.+...|++++|...++.+.+.. +.+...+..+...+...| ++++|...+++..+ .+...|..+...+...|+++
T Consensus 17 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 93 (186)
T 3as5_A 17 SHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTG--AVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYD 93 (186)
T ss_dssp HHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHH
Confidence 4566789999999999888765 446788899999999999 99999999987643 56788999999999999999
Q ss_pred hHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcccCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---
Q 038429 106 QSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK--- 182 (258)
Q Consensus 106 ~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--- 182 (258)
+|...+++..... | .+...+..+...|.+.|++++|.+.|+...+
T Consensus 94 ~A~~~~~~~~~~~---~-----------------------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 141 (186)
T 3as5_A 94 LAVPLLIKVAEAN---P-----------------------------INFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP 141 (186)
T ss_dssp HHHHHHHHHHHHC---T-----------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhcC---c-----------------------------HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc
Confidence 9999999883321 1 1233455566666677777777777765532
Q ss_pred CChhhHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 038429 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214 (258)
Q Consensus 183 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 214 (258)
.+...+..+...+...|++++|...+++..+.
T Consensus 142 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 142 NEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 24566777777777777777777777776543
No 51
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.18 E-value=1.8e-09 Score=84.76 Aligned_cols=188 Identities=11% Similarity=-0.052 Sum_probs=159.7
Q ss_pred chhhhhhhhhhhhccCCCChHHHHHHhccCCC-CChhhHHHHHHHHhc----CCChhhHHHHHHHhHhcCCCCCCcchHH
Q 038429 54 DPYSASKLFTPCALSTFSSLEYARKMFDQIPQ-PNLYTWNTLIRAYSS----SDEPIQSFMIFLQLVYNSPYFPNEFTLP 128 (258)
Q Consensus 54 ~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~-~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~ 128 (258)
++..+..+-..+...+ ++++|...|++..+ .+..++..+...|.. .+++++|+..|++. .+.+ +..++.
T Consensus 5 ~~~a~~~lg~~~~~~~--~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a-~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEK--DFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKA-CDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH-HHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHH-HHCC---CHHHHH
Confidence 4566777888888889 99999999987654 466788899999999 99999999999998 5554 667888
Q ss_pred HHHHHhcC----cCCcchhhhhhhcc--cCchhHHHHHHHHHHh----cCCHHHHHHHHHhcCCC-ChhhHHHHHHHHHc
Q 038429 129 FVIKAAAR----PVQFRVGQAIHGMF--EDDLVISNSLIHFYAV----CGDLAMAYCVFVMIGKK-DVVSWNSMISGFVE 197 (258)
Q Consensus 129 ~ll~~~~~----~~~~~~a~~~~~~~--~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~-~~~~~~~li~~~~~ 197 (258)
.+-..+.. .+++++|...++.. ..+...+..+-..|.+ .|++++|.+.|++..+. +...+..+-..|..
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~ 158 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDA 158 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHc
Confidence 88888888 99999999999988 5577889999999999 99999999999876543 66677788788887
Q ss_pred ----CCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhc----cCChhHHHHHHHHHHHcC
Q 038429 198 ----GGFFEKAIELYREMEVENVKPDEVTMVVVLSACAK----KRDLEFGIWVSSHIEKNG 250 (258)
Q Consensus 198 ----~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~----~g~~~~a~~~~~~m~~~g 250 (258)
.+++++|...|++..+.+ +...+..+-..|.. .+++++|...+++..+.+
T Consensus 159 ~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~ 216 (273)
T 1ouv_A 159 GRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE 216 (273)
T ss_dssp TSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC
Confidence 899999999999988764 46778888888888 999999999999988765
No 52
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.14 E-value=9.7e-10 Score=84.93 Aligned_cols=186 Identities=8% Similarity=-0.075 Sum_probs=151.4
Q ss_pred hhhhhhhhhhhhccCCCChHHHHHHhccCCC--CChhhHHHHHHHHhcCCChhhHHHHHHHhHhcC-CCCCC----cchH
Q 038429 55 PYSASKLFTPCALSTFSSLEYARKMFDQIPQ--PNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNS-PYFPN----EFTL 127 (258)
Q Consensus 55 ~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~~p~----~~~~ 127 (258)
...+..+...+...| ++++|...|++..+ .+..+|..+...+...|++++|+..|+...... ...|+ ..++
T Consensus 5 a~~~~~~g~~~~~~~--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKAR--QFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc--cHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 456778888889999 99999999876532 678889999999999999999999998873321 11122 4678
Q ss_pred HHHHHHhcCcCCcchhhhhhhcc---cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHcCCCh
Q 038429 128 PFVIKAAARPVQFRVGQAIHGMF---EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK--K-DVVSWNSMISGFVEGGFF 201 (258)
Q Consensus 128 ~~ll~~~~~~~~~~~a~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~ 201 (258)
..+...+...|++++|...++.. .|+. ..+.+.|++++|.+.++...+ | +...|..+...+...|++
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRTA-------DILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCchh-------HHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCH
Confidence 88899999999999999999888 4542 456777889999999988754 2 556788899999999999
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHcC
Q 038429 202 EKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250 (258)
Q Consensus 202 ~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 250 (258)
++|...+++..+.. +.+...+..+...+.+.|++++|...+++..+..
T Consensus 156 ~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 203 (258)
T 3uq3_A 156 PNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD 203 (258)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 99999999998753 2357789999999999999999999999987653
No 53
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.12 E-value=2e-10 Score=92.07 Aligned_cols=218 Identities=9% Similarity=-0.101 Sum_probs=160.3
Q ss_pred CcccccchhhHHHHHHHHHhhccCcc---hhhhhhhhhhhhccCCCChHHHHHHhccCCC---------CChhhHHHHHH
Q 038429 29 HPHFLTNQKQLKRIHAQMLSTDFFFD---PYSASKLFTPCALSTFSSLEYARKMFDQIPQ---------PNLYTWNTLIR 96 (258)
Q Consensus 29 ~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~---------~~~~~~~~li~ 96 (258)
.+...|++++|..+++.+.+...... ...+..+...+...| ++++|...+++..+ ....++..+..
T Consensus 14 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 91 (338)
T 3ro2_A 14 RLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLH--DYAKALEYHHHDLTLARTIGDQLGEAKASGNLGN 91 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 44567899999999999988742211 356788888899999 99999998876532 23567888899
Q ss_pred HHhcCCChhhHHHHHHHhHhcCCCCCC----cchHHHHHHHhcCcCC--------------------cchhhhhhhcc--
Q 038429 97 AYSSSDEPIQSFMIFLQLVYNSPYFPN----EFTLPFVIKAAARPVQ--------------------FRVGQAIHGMF-- 150 (258)
Q Consensus 97 ~~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~ll~~~~~~~~--------------------~~~a~~~~~~~-- 150 (258)
.+...|++++|...+++......-.++ ..++..+...+...|+ ++.|...++..
T Consensus 92 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~ 171 (338)
T 3ro2_A 92 TLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLS 171 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 999999999999999886322111122 3367788888888888 88887777665
Q ss_pred --------cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhhHHHHHHHHHcCCChHHHHHHHHHHHH
Q 038429 151 --------EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK-----KD----VVSWNSMISGFVEGGFFEKAIELYREMEV 213 (258)
Q Consensus 151 --------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 213 (258)
......+..+...|...|++++|.+.+++..+ ++ ..++..+...+...|++++|...+++...
T Consensus 172 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 251 (338)
T 3ro2_A 172 LVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLL 251 (338)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11234778888888999999999999887653 11 23777888888899999999998887754
Q ss_pred cCC-CCC----hhhHHHHHHHHhccCChhHHHHHHHHHHH
Q 038429 214 ENV-KPD----EVTMVVVLSACAKKRDLEFGIWVSSHIEK 248 (258)
Q Consensus 214 ~~~-~p~----~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 248 (258)
..- .++ ..++..+...+...|++++|...+++..+
T Consensus 252 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 291 (338)
T 3ro2_A 252 LARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 291 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 310 011 45677788888889999999998887653
No 54
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.10 E-value=2.9e-10 Score=93.86 Aligned_cols=218 Identities=9% Similarity=-0.106 Sum_probs=163.9
Q ss_pred CcccccchhhHHHHHHHHHhhccCcc---hhhhhhhhhhhhccCCCChHHHHHHhccCCC---------CChhhHHHHHH
Q 038429 29 HPHFLTNQKQLKRIHAQMLSTDFFFD---PYSASKLFTPCALSTFSSLEYARKMFDQIPQ---------PNLYTWNTLIR 96 (258)
Q Consensus 29 ~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~---------~~~~~~~~li~ 96 (258)
.+...|++++|...++.+.+.+.... ..++..+...+...| ++++|...+++... ....++..+..
T Consensus 18 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 95 (406)
T 3sf4_A 18 RLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLH--DYAKALEYHHHDLTLARTIGDQLGEAKASGNLGN 95 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 55667899999999999988743211 356888888999999 99999998876532 23567888999
Q ss_pred HHhcCCChhhHHHHHHHhHhcCCCCCC----cchHHHHHHHhcCcCC--------------------cchhhhhhhcc--
Q 038429 97 AYSSSDEPIQSFMIFLQLVYNSPYFPN----EFTLPFVIKAAARPVQ--------------------FRVGQAIHGMF-- 150 (258)
Q Consensus 97 ~~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~ll~~~~~~~~--------------------~~~a~~~~~~~-- 150 (258)
.+...|++++|+..+++......-.++ ..++..+...+...|+ ++.|...+...
T Consensus 96 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 175 (406)
T 3sf4_A 96 TLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLS 175 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 999999999999999876322111112 3467888888888999 88888777765
Q ss_pred --------cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhhHHHHHHHHHcCCChHHHHHHHHHHHH
Q 038429 151 --------EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK-----KD----VVSWNSMISGFVEGGFFEKAIELYREMEV 213 (258)
Q Consensus 151 --------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 213 (258)
+....++..+...|...|++++|.+.|++..+ ++ ..+|..+...|...|++++|...+++...
T Consensus 176 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 255 (406)
T 3sf4_A 176 LVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLL 255 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 11234788888999999999999999887653 22 23788888899999999999999988764
Q ss_pred c----CCCCC-hhhHHHHHHHHhccCChhHHHHHHHHHHH
Q 038429 214 E----NVKPD-EVTMVVVLSACAKKRDLEFGIWVSSHIEK 248 (258)
Q Consensus 214 ~----~~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 248 (258)
. +-.+. ..++..+...+...|++++|...+++..+
T Consensus 256 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 256 LARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 3 11111 45678888889999999999999987754
No 55
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.10 E-value=6.8e-11 Score=94.12 Aligned_cols=158 Identities=13% Similarity=0.056 Sum_probs=112.6
Q ss_pred chhhhhhhhhhhhccCCCChHHHHHHhccCCC-----------CChhhHHHHHHHHhcCCChhhHHHHHHHhHhc-----
Q 038429 54 DPYSASKLFTPCALSTFSSLEYARKMFDQIPQ-----------PNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYN----- 117 (258)
Q Consensus 54 ~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~-----------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----- 117 (258)
+..++..+...+...| ++++|..+|++..+ ....++..+...|...|++++|...+++....
T Consensus 26 ~~~~~~~l~~~~~~~g--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQG--RYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp HHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 4556777777888888 88888888876543 23456778888888888888888888777332
Q ss_pred -CCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc---c--------C-chhHHHHHHHHHHhcCCHHHHHHHHHhcCC--
Q 038429 118 -SPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF---E--------D-DLVISNSLIHFYAVCGDLAMAYCVFVMIGK-- 182 (258)
Q Consensus 118 -~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~---~--------~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-- 182 (258)
...+....++..+...+...|++++|...++.. . | ....+..+...|.+.|++++|.+.|+...+
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 112223456778888888888888888877776 0 2 234677778888888888888888876532
Q ss_pred --------C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHH
Q 038429 183 --------K-DVVSWNSMISGFVEGGFFEKAIELYREMEV 213 (258)
Q Consensus 183 --------~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 213 (258)
| ...++..+...|...|++++|...+++..+
T Consensus 184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 234677778888888888888888887764
No 56
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.09 E-value=2e-09 Score=95.99 Aligned_cols=155 Identities=9% Similarity=-0.085 Sum_probs=95.3
Q ss_pred hhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHHH
Q 038429 89 YTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFY 164 (258)
Q Consensus 89 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~ 164 (258)
.+|+.|-..|.+.|++++|+..|++..+.. +-+..+|..+-.+|.+.|++++|...++.. +.+...|+.+-.+|
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~--P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l 87 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL 87 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 445555555555555555555555542211 112345555555555555555555555554 33455677777777
Q ss_pred HhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHhccCChhHHH
Q 038429 165 AVCGDLAMAYCVFVMIGK--K-DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPD-EVTMVVVLSACAKKRDLEFGI 240 (258)
Q Consensus 165 ~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~t~~~li~~~~~~g~~~~a~ 240 (258)
.+.|++++|.+.|++..+ | +...|+.+-..|...|++++|+..|++..+. .|+ ...+..+...+...|++++|.
T Consensus 88 ~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 88 KEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccHHHHH
Confidence 777777777777765532 3 5566777777777777777777777776653 343 456677777777777777777
Q ss_pred HHHHHHH
Q 038429 241 WVSSHIE 247 (258)
Q Consensus 241 ~~~~~m~ 247 (258)
+.+++..
T Consensus 166 ~~~~kal 172 (723)
T 4gyw_A 166 ERMKKLV 172 (723)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766654
No 57
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.08 E-value=1.7e-10 Score=95.79 Aligned_cols=217 Identities=9% Similarity=-0.091 Sum_probs=167.6
Q ss_pred CcccccchhhHHHHHHHHHhhccCcch----hhhhhhhhhhhccCCCChHHHHHHhccCCC---------CChhhHHHHH
Q 038429 29 HPHFLTNQKQLKRIHAQMLSTDFFFDP----YSASKLFTPCALSTFSSLEYARKMFDQIPQ---------PNLYTWNTLI 95 (258)
Q Consensus 29 ~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~~~~~~~~a~~~~~~m~~---------~~~~~~~~li 95 (258)
.+...|++++|...++.+.+.+.. +. ..+..+...+...| ++++|...+++..+ ....++..+.
T Consensus 57 ~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 133 (411)
T 4a1s_A 57 RLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLG--DYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLG 133 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHccCchHHHHHHHHHH
Confidence 556778999999999999987533 33 47888889999999 99999998876542 3456788999
Q ss_pred HHHhcCCChhhHHHHHHHhHhc---CCC-CCCcchHHHHHHHhcCcCC-----------------cchhhhhhhcc----
Q 038429 96 RAYSSSDEPIQSFMIFLQLVYN---SPY-FPNEFTLPFVIKAAARPVQ-----------------FRVGQAIHGMF---- 150 (258)
Q Consensus 96 ~~~~~~g~~~~a~~~~~~m~~~---~~~-~p~~~~~~~ll~~~~~~~~-----------------~~~a~~~~~~~---- 150 (258)
..|...|++++|+..|++.... .+- +....++..+...+...|+ ++.|...++..
T Consensus 134 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~ 213 (411)
T 4a1s_A 134 NTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLM 213 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999886322 111 1224467888888999999 88888877765
Q ss_pred ------cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhhHHHHHHHHHcCCChHHHHHHHHHHHHcC
Q 038429 151 ------EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK-----KD----VVSWNSMISGFVEGGFFEKAIELYREMEVEN 215 (258)
Q Consensus 151 ------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 215 (258)
.....++..+...|...|++++|.+.|++..+ ++ ...+..+...|...|++++|...+++.....
T Consensus 214 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 293 (411)
T 4a1s_A 214 RDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALA 293 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 12234788888999999999999999987654 12 2378888899999999999999998876531
Q ss_pred --CC---CChhhHHHHHHHHhccCChhHHHHHHHHHHH
Q 038429 216 --VK---PDEVTMVVVLSACAKKRDLEFGIWVSSHIEK 248 (258)
Q Consensus 216 --~~---p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 248 (258)
.. ....++..+...+...|++++|...+++..+
T Consensus 294 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 331 (411)
T 4a1s_A 294 VELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLA 331 (411)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11 1145678888899999999999999987754
No 58
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.08 E-value=6.9e-10 Score=86.81 Aligned_cols=215 Identities=10% Similarity=-0.068 Sum_probs=146.5
Q ss_pred cccchhhHHHHHHHHHhh-------ccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC-----------CChhhHHH
Q 038429 32 FLTNQKQLKRIHAQMLST-------DFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ-----------PNLYTWNT 93 (258)
Q Consensus 32 ~~~~~~~a~~~~~~m~~~-------~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~-----------~~~~~~~~ 93 (258)
..|+++.|..++++..+. ..+....++..+...+...| ++++|...+++..+ ....+|..
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQN--KYKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 356777777777766653 22334667889999999999 99999999876542 24567999
Q ss_pred HHHHHhcCCChhhHHHHHHHhHhcC-----C-CCCCcchHHHHHHHhcCcCCcchhhhhhhcc------------cCchh
Q 038429 94 LIRAYSSSDEPIQSFMIFLQLVYNS-----P-YFPNEFTLPFVIKAAARPVQFRVGQAIHGMF------------EDDLV 155 (258)
Q Consensus 94 li~~~~~~g~~~~a~~~~~~m~~~~-----~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~------------~~~~~ 155 (258)
+...|...|++++|+..|++..... . .+....++..+...+...|++++|...++.. +....
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK 170 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 9999999999999999999873321 1 1223567888888999999999998888777 11245
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC-----------C-ChhhHHHHHHHHHcCCChHHHHHHHHHHH---HcC-CCC-
Q 038429 156 ISNSLIHFYAVCGDLAMAYCVFVMIGK-----------K-DVVSWNSMISGFVEGGFFEKAIELYREME---VEN-VKP- 218 (258)
Q Consensus 156 ~~~~li~~~~~~g~~~~a~~~~~~m~~-----------~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~---~~~-~~p- 218 (258)
++..+...|.+.|++++|.+.|++..+ + ....|..+...+...+....+..+..... ..+ ..|
T Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPT 250 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHH
Confidence 788888999999999999999976642 2 22334333333333333332222211111 111 112
Q ss_pred ChhhHHHHHHHHhccCChhHHHHHHHHHHH
Q 038429 219 DEVTMVVVLSACAKKRDLEFGIWVSSHIEK 248 (258)
Q Consensus 219 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 248 (258)
...++..+...|...|++++|..++++..+
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 235688899999999999999999998765
No 59
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.04 E-value=2.8e-09 Score=88.12 Aligned_cols=186 Identities=9% Similarity=-0.073 Sum_probs=155.5
Q ss_pred hhhhhhhhhhhhccCCCChHHHHHHhccCCC---CChhhHHHHHHHHhcCCC-hhhHHHHHHHhHhcCCCCCCcchHHHH
Q 038429 55 PYSASKLFTPCALSTFSSLEYARKMFDQIPQ---PNLYTWNTLIRAYSSSDE-PIQSFMIFLQLVYNSPYFPNEFTLPFV 130 (258)
Q Consensus 55 ~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~~p~~~~~~~l 130 (258)
...|..+-.++.+.| ++++|...+++..+ .+..+|+.+...+...|+ +++|+..|++... .+ +-+...|..+
T Consensus 97 ~~a~~~lg~~~~~~g--~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~-l~-P~~~~a~~~~ 172 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDE--RSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIE-EQ-PKNYQVWHHR 172 (382)
T ss_dssp HHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH-HC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHCC--ChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHH-HC-CCCHHHHHHH
Confidence 346777888888888 99999999997753 567889999999999997 9999999999843 22 2356789999
Q ss_pred HHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHc-CCChH
Q 038429 131 IKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK--K-DVVSWNSMISGFVE-GGFFE 202 (258)
Q Consensus 131 l~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~-~g~~~ 202 (258)
-.++...|++++|...++.. +.+...|..+-.++.+.|++++|+..|+++.+ | +...|+.+-..+.. .|..+
T Consensus 173 g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 173 RVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcch
Confidence 99999999999999999998 66788999999999999999999999998864 4 77899999999998 66657
Q ss_pred HH-----HHHHHHHHHcCCCCC-hhhHHHHHHHHhccC--ChhHHHHHHHHH
Q 038429 203 KA-----IELYREMEVENVKPD-EVTMVVVLSACAKKR--DLEFGIWVSSHI 246 (258)
Q Consensus 203 ~a-----~~~~~~m~~~~~~p~-~~t~~~li~~~~~~g--~~~~a~~~~~~m 246 (258)
+| +..|++.... .|+ ...|..+...+.+.| ++++|.+.+.++
T Consensus 253 eA~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~ 302 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL 302 (382)
T ss_dssp HHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHh
Confidence 77 4778877764 454 567888888888888 689999988877
No 60
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.04 E-value=4.1e-09 Score=84.46 Aligned_cols=174 Identities=8% Similarity=-0.021 Sum_probs=140.4
Q ss_pred hhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC--C-Chh-hHHHHHHHHhcCCChhhHHHHHH
Q 038429 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ--P-NLY-TWNTLIRAYSSSDEPIQSFMIFL 112 (258)
Q Consensus 37 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~--~-~~~-~~~~li~~~~~~g~~~~a~~~~~ 112 (258)
++|..+|+..++.-.+-+...|..+...+.+.| ++++|..+|++..+ | +.. .|..+...+.+.|++++|..+|+
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 158 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRM--KYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 899999999988422445678999999999999 99999999997754 4 343 89999999999999999999999
Q ss_pred HhHhcCCCCCCcchHHHHHHH-hcCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----
Q 038429 113 QLVYNSPYFPNEFTLPFVIKA-AARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK----- 182 (258)
Q Consensus 113 ~m~~~~~~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----- 182 (258)
+. .+.+ +++...|...... +...|+++.|..+|+.. +.+...|..++..+.+.|++++|..+|++..+
T Consensus 159 ~a-~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~ 236 (308)
T 2ond_A 159 KA-REDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HH-HTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HH-HhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCC
Confidence 98 4432 2334444433322 22369999999999988 66778999999999999999999999987754
Q ss_pred C--ChhhHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 038429 183 K--DVVSWNSMISGFVEGGFFEKAIELYREMEVE 214 (258)
Q Consensus 183 ~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 214 (258)
| ....|..++..+...|+.++|..+++++.+.
T Consensus 237 p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2 3457889999999999999999999998875
No 61
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.02 E-value=1.6e-08 Score=87.11 Aligned_cols=207 Identities=13% Similarity=0.001 Sum_probs=161.3
Q ss_pred hhHHHHHHHHHhhccCcchhhhhhhhhhhhc-------cCCCChH-------HHHHHhccCCC---C-ChhhHHHHHHHH
Q 038429 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCAL-------STFSSLE-------YARKMFDQIPQ---P-NLYTWNTLIRAY 98 (258)
Q Consensus 37 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-------~~~~~~~-------~a~~~~~~m~~---~-~~~~~~~li~~~ 98 (258)
+++..+|+..+... +.++..|......+.+ .| +++ +|..+|++..+ | +...|..++..+
T Consensus 255 ~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g--~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~ 331 (530)
T 2ooe_A 255 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKG--DMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYE 331 (530)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTT--CCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhcc--chhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 36677888888764 4567788888887775 67 877 89999987653 3 578899999999
Q ss_pred hcCCChhhHHHHHHHhHhcCCCCCCc--chHHHHHHHhcCcCCcchhhhhhhcc---cCc-hhHHHHHHH-HHHhcCCHH
Q 038429 99 SSSDEPIQSFMIFLQLVYNSPYFPNE--FTLPFVIKAAARPVQFRVGQAIHGMF---EDD-LVISNSLIH-FYAVCGDLA 171 (258)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~---~~~-~~~~~~li~-~~~~~g~~~ 171 (258)
.+.|++++|..+|++. .+ +.|+. ..|......+.+.|+++.|..+|+.. +|+ ...|..... .+...|+.+
T Consensus 332 ~~~g~~~~A~~~~~~a-l~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~ 408 (530)
T 2ooe_A 332 ESRMKYEKVHSIYNRL-LA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKS 408 (530)
T ss_dssp HHTTCHHHHHHHHHHH-HH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHH
T ss_pred HhcCCHHHHHHHHHHH-hC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChh
Confidence 9999999999999998 44 34543 47888888888999999999999988 332 233322222 234689999
Q ss_pred HHHHHHHhcCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcC-CCCC--hhhHHHHHHHHhccCChhHHHHHHHH
Q 038429 172 MAYCVFVMIGK--K-DVVSWNSMISGFVEGGFFEKAIELYREMEVEN-VKPD--EVTMVVVLSACAKKRDLEFGIWVSSH 245 (258)
Q Consensus 172 ~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~ 245 (258)
+|..+|+...+ | +...|..++..+.+.|+.++|..+|++....+ ..|+ ...|...+....+.|+.+.+..+.++
T Consensus 409 ~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r 488 (530)
T 2ooe_A 409 VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 488 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999997654 4 67889999999999999999999999998863 2332 33687888888889999999999998
Q ss_pred HHHc
Q 038429 246 IEKN 249 (258)
Q Consensus 246 m~~~ 249 (258)
+.+.
T Consensus 489 ~~~~ 492 (530)
T 2ooe_A 489 RFTA 492 (530)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8653
No 62
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.02 E-value=1.4e-09 Score=96.84 Aligned_cols=156 Identities=8% Similarity=-0.059 Sum_probs=134.8
Q ss_pred chhhhhhhhhhhhccCCCChHHHHHHhccCCC---CChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHH
Q 038429 54 DPYSASKLFTPCALSTFSSLEYARKMFDQIPQ---PNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130 (258)
Q Consensus 54 ~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 130 (258)
+...++.|-.++.+.| ++++|...|++..+ .+..+|+.+...|.+.|++++|+..|++..+.. +-+..+|..+
T Consensus 8 ~a~al~nLG~~~~~~G--~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~--P~~~~a~~nL 83 (723)
T 4gyw_A 8 HADSLNNLANIKREQG--NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS--PTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHH
Confidence 4668999999999999 99999999987653 467889999999999999999999999884322 2246789999
Q ss_pred HHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHcCCChHH
Q 038429 131 IKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK--K-DVVSWNSMISGFVEGGFFEK 203 (258)
Q Consensus 131 l~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~ 203 (258)
-.++.+.|++++|...++.. +.+...|+.+-..|.+.|++++|++.|++..+ | +...|..+...+...|++++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 99999999999999999988 55678999999999999999999999987654 4 67789999999999999999
Q ss_pred HHHHHHHHHH
Q 038429 204 AIELYREMEV 213 (258)
Q Consensus 204 a~~~~~~m~~ 213 (258)
|.+.+++..+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998887654
No 63
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.99 E-value=1.2e-09 Score=85.40 Aligned_cols=185 Identities=9% Similarity=-0.084 Sum_probs=129.4
Q ss_pred ccCcccccchhhHHHHHHHHHhhc------c-CcchhhhhhhhhhhhccCCCChHHHHHHhccCCC-----------CCh
Q 038429 27 QRHPHFLTNQKQLKRIHAQMLSTD------F-FFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ-----------PNL 88 (258)
Q Consensus 27 ~~~~~~~~~~~~a~~~~~~m~~~~------~-~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~-----------~~~ 88 (258)
...+...|++++|...+..+.+.. - .....++..+...|...| ++++|...|++..+ ...
T Consensus 50 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~ 127 (283)
T 3edt_B 50 ALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRG--KYKEAEPLCKRALEIREKVLGKFHPDVA 127 (283)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 346677899999999999988652 1 234557889999999999 99999999886642 235
Q ss_pred hhHHHHHHHHhcCCChhhHHHHHHHhHhc----C-CCCC-CcchHHHHHHHhcCcCCcchhhhhhhcc------------
Q 038429 89 YTWNTLIRAYSSSDEPIQSFMIFLQLVYN----S-PYFP-NEFTLPFVIKAAARPVQFRVGQAIHGMF------------ 150 (258)
Q Consensus 89 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~------------ 150 (258)
.+|..+...+...|++++|+..|++.... . +-.| ...++..+...+...|++++|...++..
T Consensus 128 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 207 (283)
T 3edt_B 128 KQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSV 207 (283)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 67899999999999999999999988432 0 1122 3457888999999999999999998877
Q ss_pred c-CchhHHHHHHHHHHhcC------CHHHHHHHHHhcCCC---ChhhHHHHHHHHHcCCChHHHHHHHHHHHH
Q 038429 151 E-DDLVISNSLIHFYAVCG------DLAMAYCVFVMIGKK---DVVSWNSMISGFVEGGFFEKAIELYREMEV 213 (258)
Q Consensus 151 ~-~~~~~~~~li~~~~~~g------~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 213 (258)
. .....|..+...+...+ .+..+...+...... ...++..+...|...|++++|..+|++..+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 208 NGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp CSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 12223333333333322 244444555544432 345788899999999999999999988764
No 64
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.99 E-value=1.2e-09 Score=90.05 Aligned_cols=219 Identities=11% Similarity=-0.017 Sum_probs=168.4
Q ss_pred cCcccccchhhHHHHHHHHHhh----ccC-cchhhhhhhhhhhhccCCCChHHHHHHhccCCC-----CC----hhhHHH
Q 038429 28 RHPHFLTNQKQLKRIHAQMLST----DFF-FDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ-----PN----LYTWNT 93 (258)
Q Consensus 28 ~~~~~~~~~~~a~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~-----~~----~~~~~~ 93 (258)
..+...|+++.|...+...... +-. ....++..+...+...| ++++|...+++..+ ++ ..++..
T Consensus 55 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 132 (406)
T 3sf4_A 55 NAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLG--NFDEAIVCCQRHLDISRELNDKVGEARALYN 132 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHhcccccchHHHHHH
Confidence 3566778999999999987654 211 22456788888999999 99999999887653 22 457889
Q ss_pred HHHHHhcCCC--------------------hhhHHHHHHHhHh---cCCCCCC-cchHHHHHHHhcCcCCcchhhhhhhc
Q 038429 94 LIRAYSSSDE--------------------PIQSFMIFLQLVY---NSPYFPN-EFTLPFVIKAAARPVQFRVGQAIHGM 149 (258)
Q Consensus 94 li~~~~~~g~--------------------~~~a~~~~~~m~~---~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~ 149 (258)
+...+...|+ +++|+..+++... ..+-.|. ..++..+...+...|++++|...++.
T Consensus 133 l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 212 (406)
T 3sf4_A 133 LGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQ 212 (406)
T ss_dssp HHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHH
T ss_pred HHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 9999999999 9999999887622 2221222 34678888899999999999999888
Q ss_pred c------cCc----hhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhhHHHHHHHHHcCCChHHHHHHHHH
Q 038429 150 F------EDD----LVISNSLIHFYAVCGDLAMAYCVFVMIGK-----KD----VVSWNSMISGFVEGGFFEKAIELYRE 210 (258)
Q Consensus 150 ~------~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~----~~~~~~li~~~~~~g~~~~a~~~~~~ 210 (258)
. .++ ..++..+...|...|++++|...+++..+ ++ ..++..+...|...|++++|...+++
T Consensus 213 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 292 (406)
T 3sf4_A 213 RLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK 292 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 7 122 23788899999999999999999987653 11 45788889999999999999999988
Q ss_pred HHHc----CCCC-ChhhHHHHHHHHhccCChhHHHHHHHHHHH
Q 038429 211 MEVE----NVKP-DEVTMVVVLSACAKKRDLEFGIWVSSHIEK 248 (258)
Q Consensus 211 m~~~----~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 248 (258)
..+. +-.+ ...++..+...+...|++++|.+.+++..+
T Consensus 293 a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 293 HLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7653 1111 145788888999999999999999998653
No 65
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.97 E-value=1.1e-08 Score=70.50 Aligned_cols=127 Identities=15% Similarity=0.146 Sum_probs=92.5
Q ss_pred hHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcccCchhHHHHHHHHHHhcCC
Q 038429 90 TWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGD 169 (258)
Q Consensus 90 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~ 169 (258)
+|..+...+...|++++|..+|+++ .+.+ +.+...+..+...+...|+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~-------------------------------~~~~~~~~~~a~~~~~~~~ 50 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKA-LELD-------------------------------PRSAEAWYNLGNAYYKQGD 50 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHH-HHHC-------------------------------TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHH-HHcC-------------------------------CcchhHHHHHHHHHHHhcC
Confidence 4666777777777777777777776 2211 1234456667777778888
Q ss_pred HHHHHHHHHhcCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHH
Q 038429 170 LAMAYCVFVMIGK---KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246 (258)
Q Consensus 170 ~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m 246 (258)
+++|.+.|+.+.+ .+...+..+...+...|++++|..+++++.... +.+...+..+...+.+.|++++|...++++
T Consensus 51 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 129 (136)
T 2fo7_A 51 YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 129 (136)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 8888888876643 355677788888888888888888888887653 235667788888888899999999988888
Q ss_pred HHc
Q 038429 247 EKN 249 (258)
Q Consensus 247 ~~~ 249 (258)
.+.
T Consensus 130 ~~~ 132 (136)
T 2fo7_A 130 LEL 132 (136)
T ss_dssp HHH
T ss_pred Hcc
Confidence 764
No 66
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.97 E-value=9.8e-10 Score=87.93 Aligned_cols=220 Identities=10% Similarity=-0.018 Sum_probs=168.1
Q ss_pred cCcccccchhhHHHHHHHHHhh----cc-CcchhhhhhhhhhhhccCCCChHHHHHHhccCCC-----CC----hhhHHH
Q 038429 28 RHPHFLTNQKQLKRIHAQMLST----DF-FFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ-----PN----LYTWNT 93 (258)
Q Consensus 28 ~~~~~~~~~~~a~~~~~~m~~~----~~-~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~-----~~----~~~~~~ 93 (258)
..+...|+++.|...+...... +- .....++..+...+...| ++++|...+++..+ ++ ..++..
T Consensus 51 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 128 (338)
T 3ro2_A 51 NAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLG--NFDEAIVCCQRHLDISRELNDKVGEARALYN 128 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 3566778999999999887654 21 223557888888999999 99999999887543 22 347888
Q ss_pred HHHHHhcCCC--------------------hhhHHHHHHHhHh---cCCCCC-CcchHHHHHHHhcCcCCcchhhhhhhc
Q 038429 94 LIRAYSSSDE--------------------PIQSFMIFLQLVY---NSPYFP-NEFTLPFVIKAAARPVQFRVGQAIHGM 149 (258)
Q Consensus 94 li~~~~~~g~--------------------~~~a~~~~~~m~~---~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~ 149 (258)
+...+...|+ +++|...+++... ..+..| ...++..+...+...|++++|...++.
T Consensus 129 l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 208 (338)
T 3ro2_A 129 LGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQ 208 (338)
T ss_dssp HHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 9999999999 9999998877622 111111 234678888889999999999999888
Q ss_pred c------cC----chhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhhHHHHHHHHHcCCChHHHHHHHHH
Q 038429 150 F------ED----DLVISNSLIHFYAVCGDLAMAYCVFVMIGK-----KD----VVSWNSMISGFVEGGFFEKAIELYRE 210 (258)
Q Consensus 150 ~------~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~----~~~~~~li~~~~~~g~~~~a~~~~~~ 210 (258)
. .+ ...++..+...|...|++++|.+.+++..+ ++ ..++..+...+...|++++|...+++
T Consensus 209 a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (338)
T 3ro2_A 209 RLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK 288 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 7 11 133788899999999999999999987643 11 45788888999999999999999988
Q ss_pred HHHc----CCCC-ChhhHHHHHHHHhccCChhHHHHHHHHHHHc
Q 038429 211 MEVE----NVKP-DEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249 (258)
Q Consensus 211 m~~~----~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 249 (258)
.... +-.+ ...++..+...+.+.|++++|...+++..+.
T Consensus 289 a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 289 HLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 7653 1111 1347788999999999999999999988754
No 67
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.97 E-value=5.4e-10 Score=92.76 Aligned_cols=218 Identities=10% Similarity=-0.041 Sum_probs=169.3
Q ss_pred CcccccchhhHHHHHHHHHhhc-----cCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC---------CChhhHHHH
Q 038429 29 HPHFLTNQKQLKRIHAQMLSTD-----FFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ---------PNLYTWNTL 94 (258)
Q Consensus 29 ~~~~~~~~~~a~~~~~~m~~~~-----~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~---------~~~~~~~~l 94 (258)
.+...|+++.|...+....+.. .......+..+...|...| ++++|...+++..+ ....++..+
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 172 (411)
T 4a1s_A 95 AYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMG--RFDEAAICCERHLTLARQLGDRLSEGRALYNL 172 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHhhchHHHHHHHHHH
Confidence 5667789999999999887651 1334567888899999999 99999999887643 234578889
Q ss_pred HHHHhcCCC-----------------hhhHHHHHHHhHh---cCCCCC-CcchHHHHHHHhcCcCCcchhhhhhhcc---
Q 038429 95 IRAYSSSDE-----------------PIQSFMIFLQLVY---NSPYFP-NEFTLPFVIKAAARPVQFRVGQAIHGMF--- 150 (258)
Q Consensus 95 i~~~~~~g~-----------------~~~a~~~~~~m~~---~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~--- 150 (258)
...|...|+ +++|+..+++... ..+-.+ ...++..+...+...|++++|...++..
T Consensus 173 ~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 252 (411)
T 4a1s_A 173 GNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRI 252 (411)
T ss_dssp HHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 999999999 9999998887522 111111 2347788888999999999999998887
Q ss_pred -c--Cc----hhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-------ChhhHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 038429 151 -E--DD----LVISNSLIHFYAVCGDLAMAYCVFVMIGK--K-------DVVSWNSMISGFVEGGFFEKAIELYREMEVE 214 (258)
Q Consensus 151 -~--~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 214 (258)
+ .+ ...+..+...|...|++++|.+.|++..+ + ...++..+...|...|++++|...+++....
T Consensus 253 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 332 (411)
T 4a1s_A 253 AREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAI 332 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1 11 23788999999999999999999987653 1 2467888899999999999999999987653
Q ss_pred ----CCCC-ChhhHHHHHHHHhccCChhHHHHHHHHHHH
Q 038429 215 ----NVKP-DEVTMVVVLSACAKKRDLEFGIWVSSHIEK 248 (258)
Q Consensus 215 ----~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 248 (258)
+-.+ ...++..+...|.+.|++++|.+.+++..+
T Consensus 333 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 333 AQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 1111 134788889999999999999999998764
No 68
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.97 E-value=3.9e-09 Score=87.05 Aligned_cols=215 Identities=7% Similarity=-0.103 Sum_probs=162.8
Q ss_pred CcccccchhhHHHHHHHHHhh----ccCc-chhhhhhhhhhhhccCCCChHHHHHHhccCCC-----C-----ChhhHHH
Q 038429 29 HPHFLTNQKQLKRIHAQMLST----DFFF-DPYSASKLFTPCALSTFSSLEYARKMFDQIPQ-----P-----NLYTWNT 93 (258)
Q Consensus 29 ~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~-----~-----~~~~~~~ 93 (258)
.+...|+++.|...+....+. +-.+ ...++..+-..|...| +++.|...+++..+ + ...+++.
T Consensus 112 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 189 (383)
T 3ulq_A 112 YELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMK--QTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 455678999999999999874 1111 3457888999999999 99999888876532 2 2457889
Q ss_pred HHHHHhcCCChhhHHHHHHHhHhc---CCCCC-CcchHHHHHHHhcCcCCcchhhhhhhcc--------c-C-chhHHHH
Q 038429 94 LIRAYSSSDEPIQSFMIFLQLVYN---SPYFP-NEFTLPFVIKAAARPVQFRVGQAIHGMF--------E-D-DLVISNS 159 (258)
Q Consensus 94 li~~~~~~g~~~~a~~~~~~m~~~---~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~--------~-~-~~~~~~~ 159 (258)
+...|...|++++|+..|++...- .+-.+ ...++..+-..+...|++++|...++.. . | ...++..
T Consensus 190 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 269 (383)
T 3ulq_A 190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFL 269 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence 999999999999999999887322 11111 1247888999999999999999888877 1 2 2347888
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC-------C-ChhhHHHHHHHHHcCCC---hHHHHHHHHHHHHcCCCCC-hhhHHHHH
Q 038429 160 LIHFYAVCGDLAMAYCVFVMIGK-------K-DVVSWNSMISGFVEGGF---FEKAIELYREMEVENVKPD-EVTMVVVL 227 (258)
Q Consensus 160 li~~~~~~g~~~~a~~~~~~m~~-------~-~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~p~-~~t~~~li 227 (258)
+...|.+.|++++|.+.+++..+ | ....++.+-..+...|+ +++|+.++++. +..|+ ...+..+.
T Consensus 270 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la 346 (383)
T 3ulq_A 270 ITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVA 346 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHH
Confidence 99999999999999999987643 2 12336677788888888 77777777665 33333 34678889
Q ss_pred HHHhccCChhHHHHHHHHHHH
Q 038429 228 SACAKKRDLEFGIWVSSHIEK 248 (258)
Q Consensus 228 ~~~~~~g~~~~a~~~~~~m~~ 248 (258)
..|...|++++|.+.+++..+
T Consensus 347 ~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 347 KYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999998754
No 69
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.95 E-value=1.3e-09 Score=92.75 Aligned_cols=178 Identities=6% Similarity=-0.152 Sum_probs=151.4
Q ss_pred cCcccccch-hhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC--CChhhHHHHHHHHhcC---
Q 038429 28 RHPHFLTNQ-KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ--PNLYTWNTLIRAYSSS--- 101 (258)
Q Consensus 28 ~~~~~~~~~-~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~li~~~~~~--- 101 (258)
..+...|++ ++|...+....+.. +.+...|..+..+|.+.| ++++|...|++..+ |+..+|..+...+...
T Consensus 110 ~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~lg~~~~~~~~~ 186 (474)
T 4abn_A 110 KALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKG--DVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTD 186 (474)
T ss_dssp HHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT--CHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCCS
T ss_pred HHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhccC
Confidence 466678899 99999999999876 446889999999999999 99999999987654 7788999999999999
Q ss_pred ------CChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCc--------CCcchhhhhhhcc----c---CchhHHHHH
Q 038429 102 ------DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARP--------VQFRVGQAIHGMF----E---DDLVISNSL 160 (258)
Q Consensus 102 ------g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~--------~~~~~a~~~~~~~----~---~~~~~~~~l 160 (258)
|++++|+..|++..... +-+...|..+..++... |++++|...++.. + .+...|..+
T Consensus 187 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l 264 (474)
T 4abn_A 187 SGDEHSRHVMDSVRQAKLAVQMD--VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNR 264 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHH
T ss_pred ChhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHH
Confidence 99999999999984332 33567888899999888 9999999999998 3 478899999
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHH
Q 038429 161 IHFYAVCGDLAMAYCVFVMIGK--K-DVVSWNSMISGFVEGGFFEKAIELYRE 210 (258)
Q Consensus 161 i~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~ 210 (258)
-..|.+.|++++|.+.|++..+ | +...+..+...+...|++++|...+.+
T Consensus 265 g~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 265 ATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999987753 4 566788888888888999888876544
No 70
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.94 E-value=1.4e-08 Score=77.39 Aligned_cols=184 Identities=7% Similarity=-0.109 Sum_probs=113.7
Q ss_pred chhhhhhhhhhhhccCCCChHHHHHHhccCCC----CChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHH
Q 038429 54 DPYSASKLFTPCALSTFSSLEYARKMFDQIPQ----PNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPF 129 (258)
Q Consensus 54 ~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ 129 (258)
|+..+...-..+...| ++++|...|++..+ ++...+..+..++...|++++|+..|++. .+.. +-+..++..
T Consensus 6 ~~~~~~~~g~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a-l~~~-p~~~~~~~~ 81 (228)
T 4i17_A 6 DPNQLKNEGNDALNAK--NYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIA-IKKN-YNLANAYIG 81 (228)
T ss_dssp CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHTT-CSHHHHHHH
T ss_pred CHHHHHHHHHHHHHcc--CHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHH-HHhC-cchHHHHHH
Confidence 4566666777777777 88888877775432 56666666777777888888888888777 3321 123456677
Q ss_pred HHHHhcCcCCcchhhhhhhcc----cCch-------hHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC---hhhHHHHHH
Q 038429 130 VIKAAARPVQFRVGQAIHGMF----EDDL-------VISNSLIHFYAVCGDLAMAYCVFVMIGK--KD---VVSWNSMIS 193 (258)
Q Consensus 130 ll~~~~~~~~~~~a~~~~~~~----~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~---~~~~~~li~ 193 (258)
+..++...|++++|...++.. +.+. ..|..+-..+.+.|++++|.+.|+...+ |+ ...|..+-.
T Consensus 82 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 82 KSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 777777777777777777766 3333 3466666667777777777777776654 32 234444444
Q ss_pred HHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHc
Q 038429 194 GFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249 (258)
Q Consensus 194 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 249 (258)
.|.. .+..+++++...+ ..+...|..... ...+.+++|...+++..+.
T Consensus 162 ~~~~-----~~~~~~~~a~~~~-~~~~~~~~~~~~--~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 162 LFYN-----NGADVLRKATPLA-SSNKEKYASEKA--KADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHH-----HHHHHHHHHGGGT-TTCHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-----HHHHHHHHHHhcc-cCCHHHHHHHHH--HHHHHHHHHHHHHHHHhhc
Confidence 4433 2333444444432 123333433332 2345679999999988765
No 71
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.90 E-value=1.2e-08 Score=70.28 Aligned_cols=125 Identities=14% Similarity=0.166 Sum_probs=89.3
Q ss_pred hhhhhhhhhhhccCCCChHHHHHHhccCCC---CChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHH
Q 038429 56 YSASKLFTPCALSTFSSLEYARKMFDQIPQ---PNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132 (258)
Q Consensus 56 ~~~~~li~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~ 132 (258)
..+..+...+...| ++++|..+|+++.+ .+...|..+...+...|++++|...|+++ ...+ |+
T Consensus 2 ~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~-~~~~--~~--------- 67 (136)
T 2fo7_A 2 EAWYNLGNAYYKQG--DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA-LELD--PR--------- 67 (136)
T ss_dssp HHHHHHHHHHHHHT--CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH-HHHC--TT---------
T ss_pred cHHHHHHHHHHHcC--cHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHH-HHHC--CC---------
Confidence 35677888899999 99999999987643 56778899999999999999999999998 3321 11
Q ss_pred HhcCcCCcchhhhhhhcccCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHcCCChHHHHHHHH
Q 038429 133 AAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK---KDVVSWNSMISGFVEGGFFEKAIELYR 209 (258)
Q Consensus 133 ~~~~~~~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~ 209 (258)
+...+..+...+.+.|++++|.+.|+.+.+ .+...+..+...+...|++++|...++
T Consensus 68 --------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 127 (136)
T 2fo7_A 68 --------------------SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 127 (136)
T ss_dssp --------------------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred --------------------chHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHH
Confidence 223445555666666666777666665532 245566667777777777777777777
Q ss_pred HHHHc
Q 038429 210 EMEVE 214 (258)
Q Consensus 210 ~m~~~ 214 (258)
++...
T Consensus 128 ~~~~~ 132 (136)
T 2fo7_A 128 KALEL 132 (136)
T ss_dssp HHHHH
T ss_pred HHHcc
Confidence 76553
No 72
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.88 E-value=2.7e-07 Score=78.70 Aligned_cols=138 Identities=9% Similarity=-0.068 Sum_probs=67.6
Q ss_pred ccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhc----cCCCChHHHHHHhccCCC-CChhhHHHHHHHHhc----CCC
Q 038429 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCAL----STFSSLEYARKMFDQIPQ-PNLYTWNTLIRAYSS----SDE 103 (258)
Q Consensus 33 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~~~a~~~~~~m~~-~~~~~~~~li~~~~~----~g~ 103 (258)
.++.+.|...+....+.| ++..+..|-..|.. .+ +.++|...|++..+ .+..++..|-..|.. .++
T Consensus 56 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~--~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~ 130 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQ--DYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVD 130 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCC
T ss_pred CcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCC
Confidence 456666666666665543 33444445555554 55 66666666554432 344455555555555 455
Q ss_pred hhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcC----cCCcchhhhhhhcc--cCchhHHHHHHHHHHh----cCCHHHH
Q 038429 104 PIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAAR----PVQFRVGQAIHGMF--EDDLVISNSLIHFYAV----CGDLAMA 173 (258)
Q Consensus 104 ~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~--~~~~~~~~~li~~~~~----~g~~~~a 173 (258)
+++|+..|+.. .+.| +...+..+-..|.. .++.++|...++.. ..+...+..|-..|.. .++.++|
T Consensus 131 ~~~A~~~~~~a-~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A 206 (490)
T 2xm6_A 131 KAESVKWFRLA-AEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAIS 206 (490)
T ss_dssp HHHHHHHHHHH-HHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHH-HHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHH
Confidence 55555555555 3332 23333333333333 34455555555444 3334444444444444 4444444
Q ss_pred HHHHHh
Q 038429 174 YCVFVM 179 (258)
Q Consensus 174 ~~~~~~ 179 (258)
.+.|+.
T Consensus 207 ~~~~~~ 212 (490)
T 2xm6_A 207 AQWYRK 212 (490)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 73
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.85 E-value=2.5e-07 Score=78.86 Aligned_cols=206 Identities=11% Similarity=-0.005 Sum_probs=121.5
Q ss_pred ccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhc----cCCCChHHHHHHhccCCC-CChhhHHHHHHHHhc----CCC
Q 038429 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCAL----STFSSLEYARKMFDQIPQ-PNLYTWNTLIRAYSS----SDE 103 (258)
Q Consensus 33 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~~~a~~~~~~m~~-~~~~~~~~li~~~~~----~g~ 103 (258)
.++.++|...|......| ++..+..|-..|.. .+ +.++|...|++..+ .+..++..+-..|.. .++
T Consensus 92 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~--~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d 166 (490)
T 2xm6_A 92 PQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKV--DKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRD 166 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCC
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCC
Confidence 456666666666666554 34445555555554 44 66777666665432 455566666666665 566
Q ss_pred hhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcC----cCCcchhhhhhhcc--cCchhHHHHHHHHHHh----cCCHHHH
Q 038429 104 PIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAAR----PVQFRVGQAIHGMF--EDDLVISNSLIHFYAV----CGDLAMA 173 (258)
Q Consensus 104 ~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~--~~~~~~~~~li~~~~~----~g~~~~a 173 (258)
.++|+..|+.. .+.| +..++..+-..|.. .++.++|...++.. ..+...+..+-..|.. .+++++|
T Consensus 167 ~~~A~~~~~~a-~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A 242 (490)
T 2xm6_A 167 YVMAREWYSKA-AEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQS 242 (490)
T ss_dssp HHHHHHHHHHH-HHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHH-HHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 67777777666 3332 34455555555544 56666666666666 4455556666666664 5667777
Q ss_pred HHHHHhcCC-CChhhHHHHHHHHHc----CCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhcc-----CChhHHHHHH
Q 038429 174 YCVFVMIGK-KDVVSWNSMISGFVE----GGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKK-----RDLEFGIWVS 243 (258)
Q Consensus 174 ~~~~~~m~~-~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~-----g~~~~a~~~~ 243 (258)
.+.|+...+ .+...+..+-..|.. .++.++|..+|++..+.| +...+..+-..|... ++.++|...+
T Consensus 243 ~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~ 319 (490)
T 2xm6_A 243 RVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWY 319 (490)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHH
Confidence 777665443 244455555555555 566777777776665543 344555555555555 6677777777
Q ss_pred HHHHHcC
Q 038429 244 SHIEKNG 250 (258)
Q Consensus 244 ~~m~~~g 250 (258)
++..+.|
T Consensus 320 ~~a~~~~ 326 (490)
T 2xm6_A 320 TKSAEQG 326 (490)
T ss_dssp HHHHHTT
T ss_pred HHHHhcC
Confidence 6666554
No 74
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.83 E-value=2.8e-07 Score=85.81 Aligned_cols=180 Identities=9% Similarity=0.007 Sum_probs=128.9
Q ss_pred chhhhhhhhhhhhccCCCChHHHHHHhccCCCCChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHH
Q 038429 54 DPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKA 133 (258)
Q Consensus 54 ~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~ 133 (258)
++.+|..+-.++.+.| ++++|...|.+. .|...|..++.++.+.|++++|.+.|... ++.. +++...+.+..+
T Consensus 1104 ~p~vWsqLAKAql~~G--~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mA-rk~~--~e~~Idt~Lafa 1176 (1630)
T 1xi4_A 1104 EPAVWSQLAKAQLQKG--MVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMA-RKKA--RESYVETELIFA 1176 (1630)
T ss_pred CHHHHHHHHHHHHhCC--CHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHH-Hhhc--ccccccHHHHHH
Confidence 4677888888888888 999998888664 67778888999999999999999999866 4433 343344458888
Q ss_pred hcCcCCcchhhhhhhcccCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHH
Q 038429 134 AARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213 (258)
Q Consensus 134 ~~~~~~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 213 (258)
|++.+++++.+.... .++...|..+-..|...|++++|..+|... ..|..+...|++.|++++|.+.+++...
T Consensus 1177 YAKl~rleele~fI~--~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA~n 1249 (1630)
T 1xi4_A 1177 LAKTNRLAELEEFIN--GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKANS 1249 (1630)
T ss_pred HHhhcCHHHHHHHHh--CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHhCC
Confidence 888877775444432 445556666777777777888888777764 4677777777777777777776655321
Q ss_pred c------------------------CCCCChhhHHHHHHHHhccCChhHHHHHHHHHH
Q 038429 214 E------------------------NVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIE 247 (258)
Q Consensus 214 ~------------------------~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 247 (258)
. ++..+...+..++..|.+.|.+++|..+++.-.
T Consensus 1250 ~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL 1307 (1630)
T 1xi4_A 1250 TRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAAL 1307 (1630)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 1 122345566778888888888988888886654
No 75
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.82 E-value=1.8e-08 Score=83.01 Aligned_cols=215 Identities=7% Similarity=-0.102 Sum_probs=159.2
Q ss_pred CcccccchhhHHHHHHHHHhhccC-c----chhhhhhhhhhhhccCCCChHHHHHHhccCCC-----C-----ChhhHHH
Q 038429 29 HPHFLTNQKQLKRIHAQMLSTDFF-F----DPYSASKLFTPCALSTFSSLEYARKMFDQIPQ-----P-----NLYTWNT 93 (258)
Q Consensus 29 ~~~~~~~~~~a~~~~~~m~~~~~~-~----~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~-----~-----~~~~~~~ 93 (258)
.+...|+++.|...+....+..-. + ...++..+..+|...| +++.|...+++..+ + ...+++.
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMK--QTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcC--CcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 345678999999999998765211 2 2456788888999999 99988887765432 1 2457889
Q ss_pred HHHHHhcCCChhhHHHHHHHhHhc---CCCCC-CcchHHHHHHHhcCcCCcchhhhhhhcc---------cCchhHHHHH
Q 038429 94 LIRAYSSSDEPIQSFMIFLQLVYN---SPYFP-NEFTLPFVIKAAARPVQFRVGQAIHGMF---------EDDLVISNSL 160 (258)
Q Consensus 94 li~~~~~~g~~~~a~~~~~~m~~~---~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~---------~~~~~~~~~l 160 (258)
+...|...|++++|+..|++...- .+-++ ...++..+-.++...|+++.|...++.. +....++..+
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 267 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGL 267 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHH
Confidence 999999999999999999886321 22111 1346778888999999999999888877 2335678888
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC-------C-ChhhHHHHHHHHHcCCC---hHHHHHHHHHHHHcCCCCC-hhhHHHHHH
Q 038429 161 IHFYAVCGDLAMAYCVFVMIGK-------K-DVVSWNSMISGFVEGGF---FEKAIELYREMEVENVKPD-EVTMVVVLS 228 (258)
Q Consensus 161 i~~~~~~g~~~~a~~~~~~m~~-------~-~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~p~-~~t~~~li~ 228 (258)
...|.+.|++++|...+++..+ + ....++.+-..+...++ ..+|+.++++ .+..|+ ...+..+..
T Consensus 268 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~ 344 (378)
T 3q15_A 268 SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAA 344 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHH
Confidence 9999999999999999986532 2 12345666667777788 7777777765 333333 345678888
Q ss_pred HHhccCChhHHHHHHHHHHH
Q 038429 229 ACAKKRDLEFGIWVSSHIEK 248 (258)
Q Consensus 229 ~~~~~g~~~~a~~~~~~m~~ 248 (258)
.|...|++++|...+++..+
T Consensus 345 ~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 345 VFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999998753
No 76
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.80 E-value=2.4e-07 Score=86.29 Aligned_cols=187 Identities=11% Similarity=0.046 Sum_probs=146.2
Q ss_pred CcccccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCCCChhhHHHHHHHHhcCCChhhHH
Q 038429 29 HPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSF 108 (258)
Q Consensus 29 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~ 108 (258)
.+...|.+++|..+|+... ......+.++. ..+ ++++|.++.++. .+..+|..+..++.+.|++++|+
T Consensus 1058 Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~--nldrAiE~Aerv--n~p~vWsqLAKAql~~G~~kEAI 1125 (1630)
T 1xi4_A 1058 IAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIG--NLDRAYEFAERC--NEPAVWSQLAKAQLQKGMVKEAI 1125 (1630)
T ss_pred HHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHh--hHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHHH
Confidence 4555677788888877642 12222333332 566 888888888766 44677889999999999999999
Q ss_pred HHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc---cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh
Q 038429 109 MIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF---EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV 185 (258)
Q Consensus 109 ~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 185 (258)
..|.+- -|...|..++.++.+.|+++++.+.+... .++....+.+..+|++.+++++...+. ..++.
T Consensus 1126 dsYiKA-------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI---~~~n~ 1195 (1630)
T 1xi4_A 1126 DSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI---NGPNN 1195 (1630)
T ss_pred HHHHhc-------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHH---hCCCH
Confidence 999654 46778889999999999999999999876 445455556999999999998655553 45677
Q ss_pred hhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHH
Q 038429 186 VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246 (258)
Q Consensus 186 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m 246 (258)
..|..+-..|-..|++++|..+|... ..|..+...+++.|+++.|.+.+++.
T Consensus 1196 ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA 1247 (1630)
T 1xi4_A 1196 AHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA 1247 (1630)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 78888889999999999999999884 48999999999999999999988765
No 77
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.79 E-value=9.1e-08 Score=72.86 Aligned_cols=183 Identities=11% Similarity=-0.039 Sum_probs=136.0
Q ss_pred CcccccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC---CChhhHHHHHHHHhcCCChh
Q 038429 29 HPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ---PNLYTWNTLIRAYSSSDEPI 105 (258)
Q Consensus 29 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~ 105 (258)
.+...|++++|...|....+....++...+..+..++...| ++++|...|++..+ .+..+|..+...+...|+++
T Consensus 16 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 93 (228)
T 4i17_A 16 DALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIK--KYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQ 93 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhh--cHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHH
Confidence 55678999999999999998875477777777889999999 99999999987643 45678999999999999999
Q ss_pred hHHHHHHHhHhcCCCCCCc-------chHHHHHHHhcCcCCcchhhhhhhcc---cCc---hhHHHHHHHHHHhcCCH--
Q 038429 106 QSFMIFLQLVYNSPYFPNE-------FTLPFVIKAAARPVQFRVGQAIHGMF---EDD---LVISNSLIHFYAVCGDL-- 170 (258)
Q Consensus 106 ~a~~~~~~m~~~~~~~p~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~---~~~---~~~~~~li~~~~~~g~~-- 170 (258)
+|+..|++..... +.+. ..|..+-..+...|++++|...++.. .|+ ...|..+-..|...|+.
T Consensus 94 ~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~ 171 (228)
T 4i17_A 94 EYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGADVL 171 (228)
T ss_dssp HHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHH
Confidence 9999999984432 1223 45777788888999999999999988 443 56788888888766653
Q ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhH
Q 038429 171 AMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTM 223 (258)
Q Consensus 171 ~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~ 223 (258)
+++. .+...+...|..... ...+.+++|...+++..+. .|+....
T Consensus 172 ~~a~----~~~~~~~~~~~~~~~--~~~~~~~~A~~~~~~a~~l--~p~~~~~ 216 (228)
T 4i17_A 172 RKAT----PLASSNKEKYASEKA--KADAAFKKAVDYLGEAVTL--SPNRTEI 216 (228)
T ss_dssp HHHG----GGTTTCHHHHHHHHH--HHHHHHHHHHHHHHHHHHH--CTTCHHH
T ss_pred HHHH----hcccCCHHHHHHHHH--HHHHHHHHHHHHHHHHhhc--CCCCHHH
Confidence 2222 222234444544443 2345688999999888774 4655443
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.77 E-value=1.9e-07 Score=76.45 Aligned_cols=215 Identities=13% Similarity=-0.026 Sum_probs=140.9
Q ss_pred ccccchhhHHHHHHHHHhhccCcchh----hhhhhhhhhhccCCCChHHHHHHhccCCC-----CC----hhhHHHHHHH
Q 038429 31 HFLTNQKQLKRIHAQMLSTDFFFDPY----SASKLFTPCALSTFSSLEYARKMFDQIPQ-----PN----LYTWNTLIRA 97 (258)
Q Consensus 31 ~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~li~~~~~~~~~~~~~a~~~~~~m~~-----~~----~~~~~~li~~ 97 (258)
...|++++|...+.......-..+.. +++.+...+...| ++++|...+++... .+ ..+++.+...
T Consensus 25 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 25 INDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKG--ELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 35678888888888877654222222 4556666777778 88888888876542 22 2335677778
Q ss_pred HhcCCChhhHHHHHHHhHhc---CCCC--CC-cchHHHHHHHhcCcCCcchhhhhhhcc---cC------chhHHHHHHH
Q 038429 98 YSSSDEPIQSFMIFLQLVYN---SPYF--PN-EFTLPFVIKAAARPVQFRVGQAIHGMF---ED------DLVISNSLIH 162 (258)
Q Consensus 98 ~~~~g~~~~a~~~~~~m~~~---~~~~--p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~---~~------~~~~~~~li~ 162 (258)
+...|++++|...+++.... .+.. |. ..++..+...+...|++++|...++.. .+ ....+..+..
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 182 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 88889999888888776321 2222 22 234566777788888888888887776 11 2346777778
Q ss_pred HHHhcCCHHHHHHHHHhcC----CCCh-hhHH-----HHHHHHHcCCChHHHHHHHHHHHHcCCCCC---hhhHHHHHHH
Q 038429 163 FYAVCGDLAMAYCVFVMIG----KKDV-VSWN-----SMISGFVEGGFFEKAIELYREMEVENVKPD---EVTMVVVLSA 229 (258)
Q Consensus 163 ~~~~~g~~~~a~~~~~~m~----~~~~-~~~~-----~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~t~~~li~~ 229 (258)
.+...|++++|...+++.. .++. ..+. ..+..+...|+.++|...+++.......++ ...+..+...
T Consensus 183 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~ 262 (373)
T 1hz4_A 183 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA 262 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHH
Confidence 8888899998888887653 2221 1222 223346688888888888877654322111 2245667777
Q ss_pred HhccCChhHHHHHHHHHH
Q 038429 230 CAKKRDLEFGIWVSSHIE 247 (258)
Q Consensus 230 ~~~~g~~~~a~~~~~~m~ 247 (258)
+...|++++|...+++..
T Consensus 263 ~~~~g~~~~A~~~l~~a~ 280 (373)
T 1hz4_A 263 QILLGEFEPAEIVLEELN 280 (373)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH
Confidence 888888888888888764
No 79
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.72 E-value=1.7e-06 Score=68.57 Aligned_cols=198 Identities=11% Similarity=0.004 Sum_probs=137.7
Q ss_pred HHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCCCChh---hHHHHHHHHhcCCChhhHHHHHHHhHhcCC
Q 038429 43 HAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLY---TWNTLIRAYSSSDEPIQSFMIFLQLVYNSP 119 (258)
Q Consensus 43 ~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 119 (258)
+..+.+....|+..+...+...+.-.- + .++..-...+.. .+...+..+...|++++|..+++.......
T Consensus 34 ~s~~e~g~~~~~~~~l~~i~~~l~~~~----~---~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~ 106 (293)
T 3u3w_A 34 VSRIESGAVYPSMDILQGIAAKLQIPI----I---HFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEE 106 (293)
T ss_dssp HHHHHTTSCCCCHHHHHHHHHHHTCCT----H---HHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHCCCCCCCHHHHHHHHHHhCcCH----H---HHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcccc
Confidence 333433344677777766666665432 1 233322222222 344457788999999999999999833333
Q ss_pred CCCCcc----hHHHHHHHhcCcCCcchhhhhhhcc------cCc----hhHHHHHHHHHHhcCCHHHHHHHHHhcCC---
Q 038429 120 YFPNEF----TLPFVIKAAARPVQFRVGQAIHGMF------EDD----LVISNSLIHFYAVCGDLAMAYCVFVMIGK--- 182 (258)
Q Consensus 120 ~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~------~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~--- 182 (258)
..|+.. .+..+...+...+++++|...++.. .++ ..+++.+...|...|++++|...|+...+
T Consensus 107 ~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 186 (293)
T 3u3w_A 107 YHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLE 186 (293)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 333321 2345677778888999999888877 223 23689999999999999999999987752
Q ss_pred ---C----ChhhHHHHHHHHHcCCChHHHHHHHHHHHHc----CCCCC-hhhHHHHHHHHhccCC-hhHHHHHHHHHH
Q 038429 183 ---K----DVVSWNSMISGFVEGGFFEKAIELYREMEVE----NVKPD-EVTMVVVLSACAKKRD-LEFGIWVSSHIE 247 (258)
Q Consensus 183 ---~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~-~~t~~~li~~~~~~g~-~~~a~~~~~~m~ 247 (258)
. ...+|..+...|.+.|++++|...+++..+. +..+. ...|..+-..+.+.|+ +++|.+.+++..
T Consensus 187 ~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 187 ALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred hcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 1 2347888999999999999999999887542 32233 5678889999999995 699999988764
No 80
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.71 E-value=5.5e-07 Score=73.69 Aligned_cols=218 Identities=11% Similarity=-0.022 Sum_probs=155.8
Q ss_pred CcccccchhhHHHHHHHHHhhccC-cc----hhhhhhhhhhhhccCCCChHHHHHHhccCCC-------C----ChhhHH
Q 038429 29 HPHFLTNQKQLKRIHAQMLSTDFF-FD----PYSASKLFTPCALSTFSSLEYARKMFDQIPQ-------P----NLYTWN 92 (258)
Q Consensus 29 ~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~-------~----~~~~~~ 92 (258)
.+...|++++|.+.+.+.....-. .+ ..++..+...+...| ++++|...+++... + ...++.
T Consensus 62 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 139 (373)
T 1hz4_A 62 VLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQG--FLQTAWETQEKAFQLINEQHLEQLPMHEFLVR 139 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHhccccCcHHHHHHH
Confidence 455678999999999988764211 11 223566777888889 99999988876532 1 234567
Q ss_pred HHHHHHhcCCChhhHHHHHHHhHhcCC-CCC--CcchHHHHHHHhcCcCCcchhhhhhhcc-----cCch-hHHH-----
Q 038429 93 TLIRAYSSSDEPIQSFMIFLQLVYNSP-YFP--NEFTLPFVIKAAARPVQFRVGQAIHGMF-----EDDL-VISN----- 158 (258)
Q Consensus 93 ~li~~~~~~g~~~~a~~~~~~m~~~~~-~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~-----~~~~-~~~~----- 158 (258)
.+...+...|++++|...+++...... ..+ ...++..+...+...|++++|...++.. .++. ..+.
T Consensus 140 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~ 219 (373)
T 1hz4_A 140 IRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANK 219 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHH
Confidence 788899999999999999988733221 111 1245777888889999999999988876 2221 1222
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCCh-------hhHHHHHHHHHcCCChHHHHHHHHHHHHc----CCCCCh-hhHHHH
Q 038429 159 SLIHFYAVCGDLAMAYCVFVMIGKKDV-------VSWNSMISGFVEGGFFEKAIELYREMEVE----NVKPDE-VTMVVV 226 (258)
Q Consensus 159 ~li~~~~~~g~~~~a~~~~~~m~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~~-~t~~~l 226 (258)
.....+...|++++|...+.....++. ..+..+...+...|++++|...+++.... |..++. ..+..+
T Consensus 220 ~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~l 299 (373)
T 1hz4_A 220 VRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLL 299 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 233457799999999999998876421 24567778899999999999999887543 222222 256667
Q ss_pred HHHHhccCChhHHHHHHHHHHH
Q 038429 227 LSACAKKRDLEFGIWVSSHIEK 248 (258)
Q Consensus 227 i~~~~~~g~~~~a~~~~~~m~~ 248 (258)
-.++...|+.++|...+++..+
T Consensus 300 a~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 300 NQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHH
Confidence 7788899999999999987653
No 81
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.70 E-value=5.5e-08 Score=77.32 Aligned_cols=186 Identities=10% Similarity=-0.037 Sum_probs=132.9
Q ss_pred hhhhhhhhhccCCCChHHHHHHhccCCC-------C--ChhhHHHHHHHHhcCCChhhHHHHHHHhHhc---CCCCCC-c
Q 038429 58 ASKLFTPCALSTFSSLEYARKMFDQIPQ-------P--NLYTWNTLIRAYSSSDEPIQSFMIFLQLVYN---SPYFPN-E 124 (258)
Q Consensus 58 ~~~li~~~~~~~~~~~~~a~~~~~~m~~-------~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~p~-~ 124 (258)
|......|...| ++++|...|++... + ...+|+.+...|.+.|++++|+..|++...- .|-... .
T Consensus 40 ~~~a~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a 117 (292)
T 1qqe_A 40 CVQAATIYRLRK--ELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA 117 (292)
T ss_dssp HHHHHHHHHHTT--CTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 344455677788 99888888875532 1 2568999999999999999999999876321 121111 3
Q ss_pred chHHHHHHHhcCc-CCcchhhhhhhcc---cC-c------hhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC---hh--
Q 038429 125 FTLPFVIKAAARP-VQFRVGQAIHGMF---ED-D------LVISNSLIHFYAVCGDLAMAYCVFVMIGK--KD---VV-- 186 (258)
Q Consensus 125 ~~~~~ll~~~~~~-~~~~~a~~~~~~~---~~-~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~---~~-- 186 (258)
.+++.+-..|... |++++|...++.. .| + ..+++.+...|.+.|++++|...|+...+ |+ ..
T Consensus 118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 197 (292)
T 1qqe_A 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS 197 (292)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGG
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHH
Confidence 4688888889886 9999999998887 12 1 35688899999999999999999987643 32 11
Q ss_pred ---hHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCh------hhHHHHHHHHh--ccCChhHHHHHHHHHH
Q 038429 187 ---SWNSMISGFVEGGFFEKAIELYREMEVENVKPDE------VTMVVVLSACA--KKRDLEFGIWVSSHIE 247 (258)
Q Consensus 187 ---~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~------~t~~~li~~~~--~~g~~~~a~~~~~~m~ 247 (258)
.|..+...+...|++++|...|++..+. .|+. ..+..++.++. ..+++++|...|+.+.
T Consensus 198 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 198 LKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 4677778889999999999999887652 3432 13455666664 4567888888776653
No 82
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.69 E-value=2e-07 Score=80.35 Aligned_cols=177 Identities=8% Similarity=-0.020 Sum_probs=139.0
Q ss_pred ccchh-------hHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC--C-Ch-hhHHHHHHHHhcC
Q 038429 33 LTNQK-------QLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ--P-NL-YTWNTLIRAYSSS 101 (258)
Q Consensus 33 ~~~~~-------~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~--~-~~-~~~~~li~~~~~~ 101 (258)
.|+++ +|..+++..++.-.+.+...|..++..+.+.| ++++|..+|++..+ | +. ..|...+..+.+.
T Consensus 292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 369 (530)
T 2ooe_A 292 KGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRM--KYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRA 369 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcC--CHHHHHHHHHHHhCccccCchHHHHHHHHHHHHh
Confidence 57766 88999998886323446788999999999999 99999999997643 4 33 4899999999999
Q ss_pred CChhhHHHHHHHhHhcCCCCCC-cchHHHHHH-HhcCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhcCCHHHHHH
Q 038429 102 DEPIQSFMIFLQLVYNSPYFPN-EFTLPFVIK-AAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMAYC 175 (258)
Q Consensus 102 g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ll~-~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~ 175 (258)
|++++|..+|++. .+. .|+ ...|..... .+...|+.+.|..+|+.. +.+...|..++..+.+.|+.++|..
T Consensus 370 ~~~~~A~~~~~~A-l~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~ 446 (530)
T 2ooe_A 370 EGIKSGRMIFKKA-RED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRV 446 (530)
T ss_dssp HHHHHHHHHHHHH-HTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHH
T ss_pred cCHHHHHHHHHHH-Hhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHH
Confidence 9999999999998 443 233 222322211 123578999999999987 5567899999999999999999999
Q ss_pred HHHhcCC--C-C----hhhHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 038429 176 VFVMIGK--K-D----VVSWNSMISGFVEGGFFEKAIELYREMEVE 214 (258)
Q Consensus 176 ~~~~m~~--~-~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 214 (258)
+|++... | + ...|...+......|+.+.+..+++++.+.
T Consensus 447 ~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 447 LFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9998753 2 2 237888888888999999999999988764
No 83
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.69 E-value=3.2e-07 Score=71.37 Aligned_cols=159 Identities=9% Similarity=-0.022 Sum_probs=87.2
Q ss_pred hhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCC-cchHHHHHHHhcCcCCcchhhhhhhcc---cC----chhHHHHH
Q 038429 89 YTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPN-EFTLPFVIKAAARPVQFRVGQAIHGMF---ED----DLVISNSL 160 (258)
Q Consensus 89 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~---~~----~~~~~~~l 160 (258)
..+-.+...+.+.|++++|+..|+.......-.|. ..++..+..++.+.|++++|...++.. .| ....+..+
T Consensus 16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l 95 (261)
T 3qky_A 16 QEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYER 95 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHH
Confidence 33444444444444444444444444211110000 223344444444444444444444444 11 12234444
Q ss_pred HHHHHh--------cCCHHHHHHHHHhcCC--C-ChhhH-----------------HHHHHHHHcCCChHHHHHHHHHHH
Q 038429 161 IHFYAV--------CGDLAMAYCVFVMIGK--K-DVVSW-----------------NSMISGFVEGGFFEKAIELYREME 212 (258)
Q Consensus 161 i~~~~~--------~g~~~~a~~~~~~m~~--~-~~~~~-----------------~~li~~~~~~g~~~~a~~~~~~m~ 212 (258)
..++.+ .|++++|...|+...+ | +.... ..+...|...|++++|+..|++..
T Consensus 96 g~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 175 (261)
T 3qky_A 96 AMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVF 175 (261)
T ss_dssp HHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 455555 5666666666655442 3 22222 455677888999999999999887
Q ss_pred HcCCCCC----hhhHHHHHHHHhcc----------CChhHHHHHHHHHHHc
Q 038429 213 VENVKPD----EVTMVVVLSACAKK----------RDLEFGIWVSSHIEKN 249 (258)
Q Consensus 213 ~~~~~p~----~~t~~~li~~~~~~----------g~~~~a~~~~~~m~~~ 249 (258)
+.. |+ ...+..+..+|... |++++|...++++.+.
T Consensus 176 ~~~--p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 176 DAY--PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHC--TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHC--CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 752 43 34567777777755 8889999999988764
No 84
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.69 E-value=1.9e-07 Score=76.94 Aligned_cols=184 Identities=9% Similarity=-0.187 Sum_probs=137.8
Q ss_pred hhhhhhccCCCChHHHHHHhccCCC-----C----ChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCC-----cch
Q 038429 61 LFTPCALSTFSSLEYARKMFDQIPQ-----P----NLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPN-----EFT 126 (258)
Q Consensus 61 li~~~~~~~~~~~~~a~~~~~~m~~-----~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~ 126 (258)
.-..+...| ++++|...|++..+ + ...+|..+...|...|++++|+..+++...-..-.++ ..+
T Consensus 109 ~g~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 186 (383)
T 3ulq_A 109 RGMYELDQR--EYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQC 186 (383)
T ss_dssp HHHHHHHTT--CHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHH
T ss_pred HHHHHHHhc--CHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHH
Confidence 445566778 99999999987643 2 3467999999999999999999999887322111121 346
Q ss_pred HHHHHHHhcCcCCcchhhhhhhcc------cC----chhHHHHHHHHHHhcCCHHHHHHHHHhcCC--------C-Chhh
Q 038429 127 LPFVIKAAARPVQFRVGQAIHGMF------ED----DLVISNSLIHFYAVCGDLAMAYCVFVMIGK--------K-DVVS 187 (258)
Q Consensus 127 ~~~ll~~~~~~~~~~~a~~~~~~~------~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--------~-~~~~ 187 (258)
++.+-..|...|++++|...++.. .+ ...+++.+-..|...|++++|.+.|++..+ | ...+
T Consensus 187 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 266 (383)
T 3ulq_A 187 HSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQA 266 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHH
Confidence 888889999999999999998887 11 124788899999999999999999987643 3 3356
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHc----CCCCChhhHHHHHHHHhccCC---hhHHHHHHHHH
Q 038429 188 WNSMISGFVEGGFFEKAIELYREMEVE----NVKPDEVTMVVVLSACAKKRD---LEFGIWVSSHI 246 (258)
Q Consensus 188 ~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~~~t~~~li~~~~~~g~---~~~a~~~~~~m 246 (258)
+..+-..|...|++++|...+++..+. +-+.....+..+-..+...|+ +++|..++++.
T Consensus 267 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~ 332 (383)
T 3ulq_A 267 YFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK 332 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence 888899999999999999999887653 111122346778888888998 66666666554
No 85
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.67 E-value=1.2e-07 Score=84.25 Aligned_cols=164 Identities=7% Similarity=-0.148 Sum_probs=133.0
Q ss_pred ccccchhhHHHHHHHHH--------hhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC---CChhhHHHHHHHHh
Q 038429 31 HFLTNQKQLKRIHAQML--------STDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ---PNLYTWNTLIRAYS 99 (258)
Q Consensus 31 ~~~~~~~~a~~~~~~m~--------~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~ 99 (258)
...+++++|.+.++... +.. +.+...+..+..++...| ++++|...|++..+ .+...|..+-.++.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g--~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLG--DVAKATRKLDDLAERVGWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcC--CHHHHHHHHHHHhccCcchHHHHHHHHHHHH
Confidence 45788999999999988 332 445678888899999999 99999999998764 57788999999999
Q ss_pred cCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhcCCHHHHHH
Q 038429 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMAYC 175 (258)
Q Consensus 100 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~ 175 (258)
+.|++++|+..|++..+.. +-+...|..+-.++.+.|++++ ...++.. +.+...|..+-.+|.+.|++++|.+
T Consensus 479 ~~g~~~~A~~~~~~al~l~--P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTF--PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999983322 2356778899999999999999 9999887 5667899999999999999999999
Q ss_pred HHHhcCC--C-ChhhHHHHHHHHHcCCC
Q 038429 176 VFVMIGK--K-DVVSWNSMISGFVEGGF 200 (258)
Q Consensus 176 ~~~~m~~--~-~~~~~~~li~~~~~~g~ 200 (258)
.|++..+ | +...|..+..++...++
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 9999875 4 34567777777766554
No 86
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.65 E-value=4.9e-07 Score=71.67 Aligned_cols=172 Identities=9% Similarity=-0.112 Sum_probs=134.6
Q ss_pred ChHHHHHHhccCCCCChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc-
Q 038429 72 SLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF- 150 (258)
Q Consensus 72 ~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~- 150 (258)
..+.....+......+...+..+...+.+.|++++|...|++..... +-+...+..+...+.+.|++++|...++..
T Consensus 101 ~~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~ 178 (287)
T 3qou_A 101 PEEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS--NQNGEIGLLLAETLIALNRSEDAEAVLXTIP 178 (287)
T ss_dssp CHHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSC
T ss_pred CHHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CcchhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 34455555555554566778888889999999999999999984332 234677888999999999999999999998
Q ss_pred --cCchhHHH-HHHHHHHhcCCHHHHHHHHHhcC--CC-ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC---hh
Q 038429 151 --EDDLVISN-SLIHFYAVCGDLAMAYCVFVMIG--KK-DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPD---EV 221 (258)
Q Consensus 151 --~~~~~~~~-~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~ 221 (258)
.|+..... .....+.+.++.++|.+.|++.. .| +...+..+-..+...|++++|+..|++..+.. |+ ..
T Consensus 179 ~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~--p~~~~~~ 256 (287)
T 3qou_A 179 LQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXD--LTAADGQ 256 (287)
T ss_dssp GGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTGGGGH
T ss_pred hhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc--cccccch
Confidence 45544333 23334667788888888887764 34 67789999999999999999999999998863 43 56
Q ss_pred hHHHHHHHHhccCChhHHHHHHHHHH
Q 038429 222 TMVVVLSACAKKRDLEFGIWVSSHIE 247 (258)
Q Consensus 222 t~~~li~~~~~~g~~~~a~~~~~~m~ 247 (258)
.+..+...+...|+.++|...+++..
T Consensus 257 a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 257 TRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 79999999999999999999888754
No 87
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.65 E-value=5.3e-07 Score=71.51 Aligned_cols=160 Identities=13% Similarity=-0.002 Sum_probs=118.2
Q ss_pred hhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCc----chHHHHHHHhcCcCCcchhhhhhhcc------cCc----
Q 038429 88 LYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNE----FTLPFVIKAAARPVQFRVGQAIHGMF------EDD---- 153 (258)
Q Consensus 88 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~------~~~---- 153 (258)
...+...+..+...|++++|+..++.........++. ..+..+...+...|++++|...++.. ..+
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 3456677888899999999999998773332211111 22344556678888999998887765 111
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcC-----CCC-----hhhHHHHHHHHHcCCChHHHHHHHHHHHHc----CCCCC
Q 038429 154 LVISNSLIHFYAVCGDLAMAYCVFVMIG-----KKD-----VVSWNSMISGFVEGGFFEKAIELYREMEVE----NVKPD 219 (258)
Q Consensus 154 ~~~~~~li~~~~~~g~~~~a~~~~~~m~-----~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~ 219 (258)
..+|+.+-..|...|++++|...|++.. .|+ ..+|+.+...|...|++++|+..+++..+. +....
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 3488999999999999999999998765 122 258889999999999999999999887643 11111
Q ss_pred -hhhHHHHHHHHhccCChhHH-HHHHHHHH
Q 038429 220 -EVTMVVVLSACAKKRDLEFG-IWVSSHIE 247 (258)
Q Consensus 220 -~~t~~~li~~~~~~g~~~~a-~~~~~~m~ 247 (258)
..+|..+...|.+.|+.++| ...+++..
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 56788889999999999999 77677653
No 88
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.65 E-value=1.7e-07 Score=73.02 Aligned_cols=163 Identities=13% Similarity=0.083 Sum_probs=112.7
Q ss_pred chhhhhhhhhhhhccCCCChHHHHHHhccCCC--C-C---hhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCC-cch
Q 038429 54 DPYSASKLFTPCALSTFSSLEYARKMFDQIPQ--P-N---LYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPN-EFT 126 (258)
Q Consensus 54 ~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~--~-~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~ 126 (258)
+...+-.+...+.+.| ++++|...|++..+ | + ..++..+..++.+.|++++|+..|+.......-.|. ..+
T Consensus 14 ~~~~~~~~a~~~~~~g--~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 14 SPQEAFERAMEFYNQG--KYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SHHHHHHHHHHHHHTT--CHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 3445555566667777 88888888876653 3 2 456777778888888888888888877443321222 334
Q ss_pred HHHHHHHhcC--------cCCcchhhhhhhcc----cCchhHH-----------------HHHHHHHHhcCCHHHHHHHH
Q 038429 127 LPFVIKAAAR--------PVQFRVGQAIHGMF----EDDLVIS-----------------NSLIHFYAVCGDLAMAYCVF 177 (258)
Q Consensus 127 ~~~ll~~~~~--------~~~~~~a~~~~~~~----~~~~~~~-----------------~~li~~~~~~g~~~~a~~~~ 177 (258)
+..+..++.. .|++++|...++.. +.+.... ..+...|.+.|++++|...|
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 171 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY 171 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 5566666666 78888888887777 3333344 45678899999999999999
Q ss_pred HhcCC--CC----hhhHHHHHHHHHcC----------CChHHHHHHHHHHHHcCCCCCh
Q 038429 178 VMIGK--KD----VVSWNSMISGFVEG----------GFFEKAIELYREMEVENVKPDE 220 (258)
Q Consensus 178 ~~m~~--~~----~~~~~~li~~~~~~----------g~~~~a~~~~~~m~~~~~~p~~ 220 (258)
+...+ |+ ...+..+..+|... |++++|...|++..+. .|+.
T Consensus 172 ~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~ 228 (261)
T 3qky_A 172 EAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI--FPDS 228 (261)
T ss_dssp HHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH--CTTC
T ss_pred HHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH--CCCC
Confidence 98754 43 23566777777755 8899999999998875 3554
No 89
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.65 E-value=1.8e-07 Score=74.91 Aligned_cols=204 Identities=10% Similarity=-0.039 Sum_probs=142.8
Q ss_pred ccchhhHHHHHHHHHhhc------cCcch----hhhhhhhhhhhccCCCChHHHHHHhccCCC-----C----ChhhHHH
Q 038429 33 LTNQKQLKRIHAQMLSTD------FFFDP----YSASKLFTPCALSTFSSLEYARKMFDQIPQ-----P----NLYTWNT 93 (258)
Q Consensus 33 ~~~~~~a~~~~~~m~~~~------~~~~~----~~~~~li~~~~~~~~~~~~~a~~~~~~m~~-----~----~~~~~~~ 93 (258)
.|++++|.+++.+..+.. ..++. ..|+.....|...| ++++|...|.+..+ . -..+|+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~ 81 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAK--QLEQAKDAYLQEAEAHANNRSLFHAAKAFEQ 81 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 577788888888776531 12332 25666777788888 99888888776532 1 1457888
Q ss_pred HHHHHhcCCChhhHHHHHHHhHh---cCCCCCC-cchHHHHHHHhcCcCCcchhhhhhhcc----cC------chhHHHH
Q 038429 94 LIRAYSSSDEPIQSFMIFLQLVY---NSPYFPN-EFTLPFVIKAAARPVQFRVGQAIHGMF----ED------DLVISNS 159 (258)
Q Consensus 94 li~~~~~~g~~~~a~~~~~~m~~---~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~------~~~~~~~ 159 (258)
+...|.+.|++++|+..|++... +.|-... ..++..+-..|.. |++++|...++.. +. ...+++.
T Consensus 82 lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~ 160 (307)
T 2ifu_A 82 AGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGK 160 (307)
T ss_dssp HHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 99999999999999999987632 2221111 3467788888888 9999998888877 11 1457888
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC-----CC----hhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCh------hhHH
Q 038429 160 LIHFYAVCGDLAMAYCVFVMIGK-----KD----VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDE------VTMV 224 (258)
Q Consensus 160 li~~~~~~g~~~~a~~~~~~m~~-----~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~------~t~~ 224 (258)
+...|.+.|++++|.+.|++..+ ++ ...+..+...+...|++++|...|++.. . .|+. ....
T Consensus 161 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~--~p~~~~~~e~~~l~ 237 (307)
T 2ifu_A 161 ASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-S--IPGFSGSEDCAALE 237 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-T--STTSTTSHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-C--CCCCCCCHHHHHHH
Confidence 89999999999999999987653 11 2256667777788899999999999887 3 3432 1344
Q ss_pred HHHHHHhccCChhHHHHHH
Q 038429 225 VVLSACAKKRDLEFGIWVS 243 (258)
Q Consensus 225 ~li~~~~~~g~~~~a~~~~ 243 (258)
.++.++ ..|+.+.+.++.
T Consensus 238 ~l~~~~-~~~d~~~~~~~~ 255 (307)
T 2ifu_A 238 DLLQAY-DEQDEEQLLRVC 255 (307)
T ss_dssp HHHHHH-HTTCHHHHHHHT
T ss_pred HHHHHH-HhcCHHHHHHHH
Confidence 555555 567777766643
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.64 E-value=4.5e-07 Score=72.08 Aligned_cols=161 Identities=8% Similarity=-0.013 Sum_probs=115.7
Q ss_pred CChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCC-CCCcchHHHHHHHhcCcCCcchhhhhhhcc---cC-----chhH
Q 038429 86 PNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPY-FPNEFTLPFVIKAAARPVQFRVGQAIHGMF---ED-----DLVI 156 (258)
Q Consensus 86 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~---~~-----~~~~ 156 (258)
++..++..+..++...|++++|++.+.+- ...+- .-+...+..++..+.+.|+.+.|...++.| .| +..+
T Consensus 98 ~~~~~~~~la~i~~~~g~~eeAL~~l~~~-i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~ 176 (310)
T 3mv2_B 98 NSPYELYLLATAQAILGDLDKSLETCVEG-IDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEM 176 (310)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHH-HTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHH-hccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHH
Confidence 45556668888888999999999999887 44432 224566788888999999999999999888 55 3566
Q ss_pred HHHHHHHH--HhcC--CHHHHHHHHHhcCC--CChhhHHHHHHHHHcCCChHHHHHHHHHHHHc-----CC---CC-Chh
Q 038429 157 SNSLIHFY--AVCG--DLAMAYCVFVMIGK--KDVVSWNSMISGFVEGGFFEKAIELYREMEVE-----NV---KP-DEV 221 (258)
Q Consensus 157 ~~~li~~~--~~~g--~~~~a~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~---~p-~~~ 221 (258)
...|..++ ...| +..+|..+|+++.+ |+..+-..++.++.+.|++++|+..++.+.+. +- .| |..
T Consensus 177 l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~ 256 (310)
T 3mv2_B 177 ILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPT 256 (310)
T ss_dssp HHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHH
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHH
Confidence 66666663 3334 89999999998865 34334555666888999999999999876543 10 13 456
Q ss_pred hHHHHHHHHhccCChhHHHHHHHHHHHc
Q 038429 222 TMVVVLSACAKKRDLEFGIWVSSHIEKN 249 (258)
Q Consensus 222 t~~~li~~~~~~g~~~~a~~~~~~m~~~ 249 (258)
+...+|......|+ +|.++++++.+.
T Consensus 257 ~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 257 FLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 66455555555676 788888888765
No 91
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.63 E-value=8.2e-07 Score=67.61 Aligned_cols=180 Identities=13% Similarity=0.029 Sum_probs=103.0
Q ss_pred hhhhhhhhhhhhccCCCChHHHHHHhccCCC--CC----hhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCc-chH
Q 038429 55 PYSASKLFTPCALSTFSSLEYARKMFDQIPQ--PN----LYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNE-FTL 127 (258)
Q Consensus 55 ~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~--~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~ 127 (258)
...+-.+...+.+.| ++++|...|+++.+ |+ ...+..+..++.+.|++++|+..|++..+...-.+.. .++
T Consensus 4 ~~~~~~~a~~~~~~g--~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDG--NWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHH
Confidence 334445555666777 88888877776643 32 2456677777778888888888887773333211111 122
Q ss_pred HHHHHHhcCcCCcchhhhhhhcccCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCh-hhH----------------
Q 038429 128 PFVIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK--KDV-VSW---------------- 188 (258)
Q Consensus 128 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~-~~~---------------- 188 (258)
..+..++...+.- . ...|..+-..+...|+.++|...|+...+ |+. ..+
T Consensus 82 ~~~g~~~~~~~~~-----~-------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~ 149 (225)
T 2yhc_A 82 YMRGLTNMALDDS-----A-------LQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKY 149 (225)
T ss_dssp HHHHHHHHHHHC--------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhh-----h-------hhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHH
Confidence 2222222211100 0 00011111222234556666666655543 321 111
Q ss_pred -HHHHHHHHcCCChHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHhccCChhHHHHHHHHHHHcC
Q 038429 189 -NSMISGFVEGGFFEKAIELYREMEVENVKPDE----VTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250 (258)
Q Consensus 189 -~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 250 (258)
-.+...|.+.|++++|...|+++.+.. |+. ..+..+..++.+.|+.++|.+.++.+...+
T Consensus 150 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 150 EYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 234456788899999999999988752 442 467888889999999999999999887654
No 92
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.62 E-value=2.4e-07 Score=67.70 Aligned_cols=156 Identities=6% Similarity=-0.119 Sum_probs=82.6
Q ss_pred hhhhhhhhhccCCCChHHHHHHhccCCC---CChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHh
Q 038429 58 ASKLFTPCALSTFSSLEYARKMFDQIPQ---PNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAA 134 (258)
Q Consensus 58 ~~~li~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~ 134 (258)
+..+...+...| ++++|...|++..+ .+...+..+...+.+.|++++|+..|+.. ... .|+.. +..+...+
T Consensus 9 ~~~~a~~~~~~g--~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a-~~~--~p~~~-~~~~~~~~ 82 (176)
T 2r5s_A 9 LLKQVSELLQQG--EHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATI-PLE--YQDNS-YKSLIAKL 82 (176)
T ss_dssp HHHHHHHHHHTT--CHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTC-CGG--GCCHH-HHHHHHHH
T ss_pred HHHHHHHHHHcC--CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHh-hhc--cCChH-HHHHHHHH
Confidence 334445555666 77777777766654 34556666666777777777777766655 221 12221 11111000
Q ss_pred cCcCCcchhhhhhhcccCchhHHHHHHHHHHhcCCHHHHHHHHHhcC--CC-ChhhHHHHHHHHHcCCChHHHHHHHHHH
Q 038429 135 ARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIG--KK-DVVSWNSMISGFVEGGFFEKAIELYREM 211 (258)
Q Consensus 135 ~~~~~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m 211 (258)
.+...+...+|...|+... .| +...+..+-..+...|++++|...|++.
T Consensus 83 ----------------------------~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 134 (176)
T 2r5s_A 83 ----------------------------ELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNI 134 (176)
T ss_dssp ----------------------------HHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ----------------------------HHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 0011111122344444332 23 4556666666666677777777777666
Q ss_pred HHcCCCC-ChhhHHHHHHHHhccCChhHHHHHHHHHH
Q 038429 212 EVENVKP-DEVTMVVVLSACAKKRDLEFGIWVSSHIE 247 (258)
Q Consensus 212 ~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 247 (258)
.+..-.+ +...+..+...+...|+.++|...|++..
T Consensus 135 l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 135 LKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 5543211 23456666666777777777776666554
No 93
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.61 E-value=2.3e-07 Score=73.72 Aligned_cols=194 Identities=11% Similarity=-0.081 Sum_probs=139.9
Q ss_pred hHHHHHHHHHhhccCcchhhhhhhhhhhhcc-CCCChHHHHHHhccCCCCChhhHHHHHHHHhcCCChhhHHHHHHHhHh
Q 038429 38 QLKRIHAQMLSTDFFFDPYSASKLFTPCALS-TFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVY 116 (258)
Q Consensus 38 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 116 (258)
+|.+++.+..+.- +++...+ .+ |... + .++++|...|++. ...|...|++++|+..|.+...
T Consensus 3 ~a~~~~~~a~k~~-~~~~~~~-~~---~~~~~~-~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~ 65 (292)
T 1qqe_A 3 DPVELLKRAEKKG-VPSSGFM-KL---FSGSDS-YKFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAAD 65 (292)
T ss_dssp CHHHHHHHHHHHS-SCCCTHH-HH---HSCCSH-HHHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHh-CcCCCcc-hh---cCCCCC-ccHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHH
Confidence 4566666665553 3222223 22 2221 2 0377887776654 5678889999999999987632
Q ss_pred ---cCCCCCC-cchHHHHHHHhcCcCCcchhhhhhhcc---c---Cc----hhHHHHHHHHHHhc-CCHHHHHHHHHhcC
Q 038429 117 ---NSPYFPN-EFTLPFVIKAAARPVQFRVGQAIHGMF---E---DD----LVISNSLIHFYAVC-GDLAMAYCVFVMIG 181 (258)
Q Consensus 117 ---~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~---~---~~----~~~~~~li~~~~~~-g~~~~a~~~~~~m~ 181 (258)
+.|-+++ ..+|+.+..+|.+.|++++|...++.. . .+ ..+++.+-..|... |++++|...|++..
T Consensus 66 ~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al 145 (292)
T 1qqe_A 66 YQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAG 145 (292)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 2232222 467899999999999999999988877 1 11 45788999999996 99999999998765
Q ss_pred C--C---C----hhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChh------hHHHHHHHHhccCChhHHHHHHHHH
Q 038429 182 K--K---D----VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEV------TMVVVLSACAKKRDLEFGIWVSSHI 246 (258)
Q Consensus 182 ~--~---~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~------t~~~li~~~~~~g~~~~a~~~~~~m 246 (258)
+ | + ..+|+.+...+...|++++|+..|++..+........ .|..+..++...|++++|...+++.
T Consensus 146 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 225 (292)
T 1qqe_A 146 EWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEG 225 (292)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGG
T ss_pred HHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4 2 1 3568889999999999999999999988764322221 5677788889999999999999887
Q ss_pred HH
Q 038429 247 EK 248 (258)
Q Consensus 247 ~~ 248 (258)
.+
T Consensus 226 l~ 227 (292)
T 1qqe_A 226 QS 227 (292)
T ss_dssp GC
T ss_pred Hh
Confidence 53
No 94
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.61 E-value=1.7e-07 Score=74.47 Aligned_cols=172 Identities=10% Similarity=-0.027 Sum_probs=128.2
Q ss_pred HHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC-----CChhhHHHHHHHHhcCCChhhHHHHHHH
Q 038429 39 LKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ-----PNLYTWNTLIRAYSSSDEPIQSFMIFLQ 113 (258)
Q Consensus 39 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~-----~~~~~~~~li~~~~~~g~~~~a~~~~~~ 113 (258)
+...++.....+ .++..++..+..++...| ++++|++++.+... .+...+..++..+.+.|+++.|.+.++.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g--~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILG--DLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDN 161 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHT--CHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcC--CHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 455666666555 456666678888899999 99999999987632 3667888999999999999999999999
Q ss_pred hHhcCCCCC-----CcchHHHHHHHh----cCcCCcchhhhhhhcc---cCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 038429 114 LVYNSPYFP-----NEFTLPFVIKAA----ARPVQFRVGQAIHGMF---EDDLVISNSLIHFYAVCGDLAMAYCVFVMIG 181 (258)
Q Consensus 114 m~~~~~~~p-----~~~~~~~ll~~~----~~~~~~~~a~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 181 (258)
| .+. .| +..+...+..++ ...++...|..+|+.+ .|+..+...++.++.+.|++++|++.++.+.
T Consensus 162 ~-~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 162 Y-TNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp H-HHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred H-Hhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9 543 45 355666666553 2344899999999999 5554455566668999999999999997653
Q ss_pred C------------C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCh
Q 038429 182 K------------K-DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDE 220 (258)
Q Consensus 182 ~------------~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 220 (258)
+ | |..+.-.+|......|+ +|.+++.++++. .|+.
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~--~P~h 286 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL--DHEH 286 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT--TCCC
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh--CCCC
Confidence 3 3 66677556555555676 889999999885 3554
No 95
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.60 E-value=3.9e-07 Score=66.56 Aligned_cols=150 Identities=11% Similarity=-0.035 Sum_probs=97.9
Q ss_pred cCcccccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC--CChhhHHHHHHH-HhcCCCh
Q 038429 28 RHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ--PNLYTWNTLIRA-YSSSDEP 104 (258)
Q Consensus 28 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~li~~-~~~~g~~ 104 (258)
..+...|++++|...++...+.. +.+...+..+..++...| ++++|...|++..+ |+...+...... +.+.+..
T Consensus 14 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g--~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~ 90 (176)
T 2r5s_A 14 SELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETK--QFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAE 90 (176)
T ss_dssp HHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTT--CHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCC--CHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhccc
Confidence 35667899999999999988765 446778899999999999 99999999999865 433222221111 1111122
Q ss_pred hhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcccCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--
Q 038429 105 IQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK-- 182 (258)
Q Consensus 105 ~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-- 182 (258)
.+|+..|++.... . +.+...+..+...+...|++++|.+.|++..+
T Consensus 91 ~~a~~~~~~al~~---~-----------------------------P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 138 (176)
T 2r5s_A 91 SPELKRLEQELAA---N-----------------------------PDNFELACELAVQYNQVGRDEEALELLWNILKVN 138 (176)
T ss_dssp CHHHHHHHHHHHH---S-----------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHh---C-----------------------------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC
Confidence 2344455444111 1 23455666677777777777777777776543
Q ss_pred CC---hhhHHHHHHHHHcCCChHHHHHHHHHHH
Q 038429 183 KD---VVSWNSMISGFVEGGFFEKAIELYREME 212 (258)
Q Consensus 183 ~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~ 212 (258)
|+ ...+..+...+...|+.++|...|++..
T Consensus 139 p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 139 LGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp TTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred cccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 32 3467777777777777777777776543
No 96
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.60 E-value=1.7e-06 Score=73.06 Aligned_cols=209 Identities=8% Similarity=-0.090 Sum_probs=106.3
Q ss_pred CcccccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCCh---HHHHHHhccCCCCChhhHHHHHHHHhcCC---
Q 038429 29 HPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSL---EYARKMFDQIPQPNLYTWNTLIRAYSSSD--- 102 (258)
Q Consensus 29 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~---~~a~~~~~~m~~~~~~~~~~li~~~~~~g--- 102 (258)
...+.|++++|.++|....+.| ++..+..|-..|...| +. ++|...|++..+.+...+..+-..+...+
T Consensus 12 ~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g--~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~ 86 (452)
T 3e4b_A 12 EALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTR--DPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGAT 86 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC------------------------------CHHHHHHHHHTC--CC
T ss_pred HHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccC--CCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCC
Confidence 4456789999999999998887 3445556666666666 66 89999998887667788888888666665
Q ss_pred --ChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc------------------------------
Q 038429 103 --EPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF------------------------------ 150 (258)
Q Consensus 103 --~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~------------------------------ 150 (258)
++++|+..|+.. .+.|. ...+..|-..|...+..+.+...++.+
T Consensus 87 ~~~~~~A~~~~~~A-a~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~ 162 (452)
T 3e4b_A 87 EAEHHEAESLLKKA-FANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLD 162 (452)
T ss_dssp HHHHHHHHHHHHHH-HHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHH
T ss_pred CcCHHHHHHHHHHH-HHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHH
Confidence 778999999988 55442 225555555555444433322222222
Q ss_pred ----------cCchhHHHHHHHHHHhcC---CHHHHHHHHHhcCC---CChhhHHHHHHHHHcC----CChHHHHHHHHH
Q 038429 151 ----------EDDLVISNSLIHFYAVCG---DLAMAYCVFVMIGK---KDVVSWNSMISGFVEG----GFFEKAIELYRE 210 (258)
Q Consensus 151 ----------~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~----g~~~~a~~~~~~ 210 (258)
..+...+..|-..|.+.| +.++|.+.|+...+ ++...+..|-..|... ++.++|..+|++
T Consensus 163 ~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~ 242 (452)
T 3e4b_A 163 DVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEK 242 (452)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHH
Confidence 233335555556666666 66666666654422 2333334444444333 466666666666
Q ss_pred HHHcCCCCChhhHHHHHHH-H--hccCChhHHHHHHHHHHHcC
Q 038429 211 MEVENVKPDEVTMVVVLSA-C--AKKRDLEFGIWVSSHIEKNG 250 (258)
Q Consensus 211 m~~~~~~p~~~t~~~li~~-~--~~~g~~~~a~~~~~~m~~~g 250 (258)
.. .| +...+..|-.. + ...+++++|.+.|++..+.|
T Consensus 243 aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g 281 (452)
T 3e4b_A 243 IA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD 281 (452)
T ss_dssp HG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT
T ss_pred Hc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC
Confidence 55 22 23334444443 2 34667777777777666655
No 97
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.60 E-value=5.3e-07 Score=67.61 Aligned_cols=89 Identities=7% Similarity=-0.126 Sum_probs=56.0
Q ss_pred hhhhhhhhhccCCCChHHHHHHhccCCCCChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCc
Q 038429 58 ASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARP 137 (258)
Q Consensus 58 ~~~li~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~ 137 (258)
+..+...+...| ++++|...|++...++..+|..+...+.+.|++++|+..|++..... +.+..++..+..++...
T Consensus 9 ~~~~g~~~~~~~--~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 9 LWNEGVLAADKK--DWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--KHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHHTT--CHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC--CHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHc
Confidence 344555566667 77778777777766777777777777777778888777777763221 22334455555555555
Q ss_pred CCcchhhhhhhcc
Q 038429 138 VQFRVGQAIHGMF 150 (258)
Q Consensus 138 ~~~~~a~~~~~~~ 150 (258)
|++++|...++..
T Consensus 85 ~~~~~A~~~~~~a 97 (213)
T 1hh8_A 85 EKYDLAIKDLKEA 97 (213)
T ss_dssp TCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHH
Confidence 5555555555444
No 98
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.59 E-value=1.5e-06 Score=65.66 Aligned_cols=158 Identities=9% Similarity=-0.051 Sum_probs=87.7
Q ss_pred ChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcC----Ccchhhhhhhcc--cCchhHHHHH
Q 038429 87 NLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPV----QFRVGQAIHGMF--EDDLVISNSL 160 (258)
Q Consensus 87 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~----~~~~a~~~~~~~--~~~~~~~~~l 160 (258)
+..++..+-..|...+++++|+..|++. .+.| +..++..|-..|.. + ++++|...++.. ..+...+..|
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a-~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g~~~a~~~L 91 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKA-AAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAGSKSGEIVL 91 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHH-HHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHH-HHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3334444444444444444444444444 2222 22333333333333 3 344444444444 3344455555
Q ss_pred HHHHHh----cCCHHHHHHHHHhcCCCC-----hhhHHHHHHHHHc----CCChHHHHHHHHHHHHcCCCCChhhHHHHH
Q 038429 161 IHFYAV----CGDLAMAYCVFVMIGKKD-----VVSWNSMISGFVE----GGFFEKAIELYREMEVENVKPDEVTMVVVL 227 (258)
Q Consensus 161 i~~~~~----~g~~~~a~~~~~~m~~~~-----~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~t~~~li 227 (258)
-..|.. .+++++|.+.|+...+.+ ...+..|-..|.. .++.++|..+|++..+. ..+...+..|-
T Consensus 92 g~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~Lg 169 (212)
T 3rjv_A 92 ARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYWAG 169 (212)
T ss_dssp HHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHHHH
T ss_pred HHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHHHH
Confidence 555554 667777877777665532 4667777677766 66788888888877665 23444555666
Q ss_pred HHHhcc-C-----ChhHHHHHHHHHHHcCC
Q 038429 228 SACAKK-R-----DLEFGIWVSSHIEKNGI 251 (258)
Q Consensus 228 ~~~~~~-g-----~~~~a~~~~~~m~~~g~ 251 (258)
..|... | +.++|...++...+.|.
T Consensus 170 ~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 170 MMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 666543 2 78888888888777664
No 99
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.59 E-value=3.7e-07 Score=79.30 Aligned_cols=142 Identities=7% Similarity=-0.071 Sum_probs=107.6
Q ss_pred ChHHHHHHhccCCC---CChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhh
Q 038429 72 SLEYARKMFDQIPQ---PNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG 148 (258)
Q Consensus 72 ~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 148 (258)
++++|...|++..+ .+...|..+...+.+.|++++|+..|++. .+.. +-+..++..+..++...|++++|...++
T Consensus 4 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a-l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 4 DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRG-LALH-PGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -----------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHH-HTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 88999999988764 45788999999999999999999999998 4432 3346778888899999999999999988
Q ss_pred cc----cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHcC---CChHHHHHHHHHHHHcC
Q 038429 149 MF----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK--K-DVVSWNSMISGFVEG---GFFEKAIELYREMEVEN 215 (258)
Q Consensus 149 ~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~~ 215 (258)
.. +.+...+..+...|.+.|++++|.+.|++..+ | +...+..+...+... |+.++|.+.+++..+.+
T Consensus 82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 88 55677899999999999999999999987653 3 667888888899888 99999999999888764
No 100
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.58 E-value=2e-06 Score=72.52 Aligned_cols=84 Identities=5% Similarity=-0.153 Sum_probs=58.7
Q ss_pred CcccccchhhHHHHHHHHHhh-----c---cCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC-----------CChh
Q 038429 29 HPHFLTNQKQLKRIHAQMLST-----D---FFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ-----------PNLY 89 (258)
Q Consensus 29 ~~~~~~~~~~a~~~~~~m~~~-----~---~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~-----------~~~~ 89 (258)
.....|+.++|.+.|....+. + ......+|+.+..+|...| ++++|...+++..+ ....
T Consensus 60 ~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g--~~~~A~~~~~ka~~i~~~~~~~~~~~~~~ 137 (472)
T 4g1t_A 60 LKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMG--RLSDVQIYVDKVKHVCEKFSSPYRIESPE 137 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHSCCSSCCCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHhHhcccccchhhHH
Confidence 556678999999999887653 1 1223457889999999999 99999888765421 1234
Q ss_pred hHHHHHHHHhc--CCChhhHHHHHHHh
Q 038429 90 TWNTLIRAYSS--SDEPIQSFMIFLQL 114 (258)
Q Consensus 90 ~~~~li~~~~~--~g~~~~a~~~~~~m 114 (258)
+|+.+..++.. .+++++|+..|++.
T Consensus 138 ~~~~~g~~~~~~~~~~y~~A~~~~~ka 164 (472)
T 4g1t_A 138 LDCEEGWTRLKCGGNQNERAKVCFEKA 164 (472)
T ss_dssp HHHHHHHHHHHHCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHHH
Confidence 56655555544 35688888888876
No 101
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.57 E-value=4.6e-07 Score=76.45 Aligned_cols=177 Identities=12% Similarity=-0.035 Sum_probs=96.0
Q ss_pred ChHHHHHHhccCC---CCChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCc-----------
Q 038429 72 SLEYARKMFDQIP---QPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARP----------- 137 (258)
Q Consensus 72 ~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~----------- 137 (258)
+.++|...+++.. ..+..++..+...|.+.|++++|+..|++..+.. +-+..++..+..+|...
T Consensus 228 ~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~y~~~~~~~~~~~~~~ 305 (472)
T 4g1t_A 228 EEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI--PNNAYLHCQIGCCYRAKVFQVMNLRENG 305 (472)
T ss_dssp --CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 4455555554432 2455667777777777788888877777763221 12233444444333211
Q ss_pred --------CCcchhhhhhhcc----cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChh----hHHHHHH-HHHcC
Q 038429 138 --------VQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK--KDVV----SWNSMIS-GFVEG 198 (258)
Q Consensus 138 --------~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~----~~~~li~-~~~~~ 198 (258)
+..+.|...++.. +.+...+..+-..|.+.|++++|.+.|++..+ |+.. .+..+.. .....
T Consensus 306 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~ 385 (472)
T 4g1t_A 306 MYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQM 385 (472)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHC
Confidence 1133444444444 45556777888888888999999888876532 3222 1222221 23467
Q ss_pred CChHHHHHHHHHHHHcC-----------------------CCCChhhHHHHHHHHhccCChhHHHHHHHHHHHcC
Q 038429 199 GFFEKAIELYREMEVEN-----------------------VKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250 (258)
Q Consensus 199 g~~~~a~~~~~~m~~~~-----------------------~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 250 (258)
|+.++|+..|++..+.. -+.+..+|..+-..+...|++++|.+.|++..+.|
T Consensus 386 ~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 386 KCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp SCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred CCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 88888888877654421 12345678888888888899999999888877644
No 102
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.55 E-value=4.9e-07 Score=78.53 Aligned_cols=154 Identities=8% Similarity=-0.113 Sum_probs=112.5
Q ss_pred ccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC---CChhhHHHHHHHHhcCCChhhHHH
Q 038429 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ---PNLYTWNTLIRAYSSSDEPIQSFM 109 (258)
Q Consensus 33 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~ 109 (258)
.|++++|.+.+++..+.. +.+...+..+...+...| ++++|...|++..+ .+...|..+...|.+.|++++|..
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMG--DTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHT--CHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 478899999999988765 345778999999999999 99999999987644 467889999999999999999999
Q ss_pred HHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhc---CCHHHHHHHHHhcCC
Q 038429 110 IFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVC---GDLAMAYCVFVMIGK 182 (258)
Q Consensus 110 ~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~ 182 (258)
.|++..+.. +.+...+..+..++.+.|++++|...++.. +.+...+..+...+... |+.++|.+.+++..+
T Consensus 79 ~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 79 LLQQASDAA--PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 999984332 334678899999999999999999999988 55677899999999999 999999999988754
Q ss_pred --C-ChhhHHHH
Q 038429 183 --K-DVVSWNSM 191 (258)
Q Consensus 183 --~-~~~~~~~l 191 (258)
| +...|..+
T Consensus 157 ~~p~~~~~~~~l 168 (568)
T 2vsy_A 157 QGVGAVEPFAFL 168 (568)
T ss_dssp HTCCCSCHHHHT
T ss_pred cCCcccChHHHh
Confidence 3 34444443
No 103
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.53 E-value=1.2e-06 Score=71.94 Aligned_cols=181 Identities=12% Similarity=-0.027 Sum_probs=134.9
Q ss_pred hhhhccCCCChHHHHHHhccCCC-----C----ChhhHHHHHHHHhcCCChhhHHHHHHHhHhc---CC-CCC-CcchHH
Q 038429 63 TPCALSTFSSLEYARKMFDQIPQ-----P----NLYTWNTLIRAYSSSDEPIQSFMIFLQLVYN---SP-YFP-NEFTLP 128 (258)
Q Consensus 63 ~~~~~~~~~~~~~a~~~~~~m~~-----~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~-~~p-~~~~~~ 128 (258)
..+...| ++++|...|++..+ + ...++..+...|...|+++.|+..+++...- .+ ..+ ...+++
T Consensus 109 ~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 109 MYEFDQK--EYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHTT--CHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHC--CHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 3455677 99999999986543 2 3457889999999999999999999886321 11 111 245678
Q ss_pred HHHHHhcCcCCcchhhhhhhcc------cC----chhHHHHHHHHHHhcCCHHHHHHHHHhcCC-------C-ChhhHHH
Q 038429 129 FVIKAAARPVQFRVGQAIHGMF------ED----DLVISNSLIHFYAVCGDLAMAYCVFVMIGK-------K-DVVSWNS 190 (258)
Q Consensus 129 ~ll~~~~~~~~~~~a~~~~~~~------~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-------~-~~~~~~~ 190 (258)
.+-..+...|+++.|...++.. .+ ...+++.+-..|...|++++|.+.|++..+ | ...++..
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 266 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFG 266 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence 8889999999999999988877 11 235788899999999999999999987653 2 3457788
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHcCCC---C-ChhhHHHHHHHHhccCC---hhHHHHHHHH
Q 038429 191 MISGFVEGGFFEKAIELYREMEVENVK---P-DEVTMVVVLSACAKKRD---LEFGIWVSSH 245 (258)
Q Consensus 191 li~~~~~~g~~~~a~~~~~~m~~~~~~---p-~~~t~~~li~~~~~~g~---~~~a~~~~~~ 245 (258)
+...|.+.|++++|...+++..+..-. | ....+..+-..+...|+ +++|...+++
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~ 328 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK 328 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 889999999999999999998764211 2 23346666667777888 6666666654
No 104
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.52 E-value=4.8e-07 Score=71.73 Aligned_cols=156 Identities=7% Similarity=-0.128 Sum_probs=124.5
Q ss_pred CcchhhhhhhhhhhhccCCCChHHHHHHhccCCC---CChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHH
Q 038429 52 FFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ---PNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLP 128 (258)
Q Consensus 52 ~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~ 128 (258)
+.+...+..+...+...| ++++|...|++..+ .+...+..+...+.+.|++++|...+++. ... .|+.....
T Consensus 114 p~~~~~~~~~a~~~~~~g--~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~-~~~--~p~~~~~~ 188 (287)
T 3qou_A 114 PREEELXAQQAMQLMQES--NYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTI-PLQ--DQDTRYQG 188 (287)
T ss_dssp CCHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTS-CGG--GCSHHHHH
T ss_pred CCchhhHHHHHHHHHhCC--CHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhC-chh--hcchHHHH
Confidence 455667778888888999 99999999997743 56788999999999999999999999987 332 34433222
Q ss_pred -HHHHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC---hhhHHHHHHHHHcC
Q 038429 129 -FVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK--KD---VVSWNSMISGFVEG 198 (258)
Q Consensus 129 -~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~---~~~~~~li~~~~~~ 198 (258)
.....+...++.+.|...++.. +.+...+..+...|...|++++|.+.|.+..+ |+ ...+..+...+...
T Consensus 189 ~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 189 LVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence 2223356677788788777776 66778999999999999999999999998764 43 56899999999999
Q ss_pred CChHHHHHHHHHHH
Q 038429 199 GFFEKAIELYREME 212 (258)
Q Consensus 199 g~~~~a~~~~~~m~ 212 (258)
|+.++|...+++-.
T Consensus 269 g~~~~a~~~~r~al 282 (287)
T 3qou_A 269 GTGDALASXYRRQL 282 (287)
T ss_dssp CTTCHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHH
Confidence 99999999887754
No 105
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.51 E-value=1.3e-06 Score=66.46 Aligned_cols=169 Identities=13% Similarity=0.070 Sum_probs=114.7
Q ss_pred CcccccchhhHHHHHHHHHhhccCc--chhhhhhhhhhhhccCCCChHHHHHHhccCCC--CCh----hhHHHHHHHHhc
Q 038429 29 HPHFLTNQKQLKRIHAQMLSTDFFF--DPYSASKLFTPCALSTFSSLEYARKMFDQIPQ--PNL----YTWNTLIRAYSS 100 (258)
Q Consensus 29 ~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~--~~~----~~~~~li~~~~~ 100 (258)
.+...|++++|...|+.+.+..... ....+..+..++.+.| ++++|...|++..+ |+. .++..+..++.+
T Consensus 13 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~--~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~ 90 (225)
T 2yhc_A 13 QKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNA--DLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMA 90 (225)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHh
Confidence 4566799999999999999864221 2356778888999999 99999999998753 332 245555555543
Q ss_pred ------------------CCChhhHHHHHHHhHhcCCCCCCc-chHHHHHHHhcCcCCcchhhhhhhcccCchhHHHHHH
Q 038429 101 ------------------SDEPIQSFMIFLQLVYNSPYFPNE-FTLPFVIKAAARPVQFRVGQAIHGMFEDDLVISNSLI 161 (258)
Q Consensus 101 ------------------~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~li 161 (258)
.|++++|+..|++..+.. |+. .++....... .+. ..-....-.+.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---P~~~~a~~a~~~l~----------~~~---~~~~~~~~~~a 154 (225)
T 2yhc_A 91 LDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY---PNSQYTTDATKRLV----------FLK---DRLAKYEYSVA 154 (225)
T ss_dssp HHC--------------CCHHHHHHHHHHHHHHTTC---TTCTTHHHHHHHHH----------HHH---HHHHHHHHHHH
T ss_pred hhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC---cCChhHHHHHHHHH----------HHH---HHHHHHHHHHH
Confidence 567888888888873322 332 2222111100 000 00011123456
Q ss_pred HHHHhcCCHHHHHHHHHhcCC--CCh----hhHHHHHHHHHcCCChHHHHHHHHHHHHcC
Q 038429 162 HFYAVCGDLAMAYCVFVMIGK--KDV----VSWNSMISGFVEGGFFEKAIELYREMEVEN 215 (258)
Q Consensus 162 ~~~~~~g~~~~a~~~~~~m~~--~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 215 (258)
..|.+.|++++|...|+.+.+ |+. ..+..+..+|.+.|+.++|...++.+...+
T Consensus 155 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 155 EYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 778899999999999998764 432 467888999999999999999999888764
No 106
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.49 E-value=2.3e-06 Score=64.06 Aligned_cols=86 Identities=6% Similarity=-0.197 Sum_probs=49.6
Q ss_pred hHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHHHH
Q 038429 90 TWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYA 165 (258)
Q Consensus 90 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~ 165 (258)
.+..+...+...|++++|+..|++. +.|+..++..+..++...|++++|...++.. +.+...|..+..+|.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 3555666677777777777777655 2445555555555555555555555555554 334445555555555
Q ss_pred hcCCHHHHHHHHHhc
Q 038429 166 VCGDLAMAYCVFVMI 180 (258)
Q Consensus 166 ~~g~~~~a~~~~~~m 180 (258)
+.|++++|.+.|+..
T Consensus 83 ~~~~~~~A~~~~~~a 97 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEA 97 (213)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHH
Confidence 555555555555443
No 107
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.47 E-value=2.7e-07 Score=82.08 Aligned_cols=163 Identities=7% Similarity=-0.087 Sum_probs=129.4
Q ss_pred hccCCCChHHHHHHhccCC-----------CCChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHh
Q 038429 66 ALSTFSSLEYARKMFDQIP-----------QPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAA 134 (258)
Q Consensus 66 ~~~~~~~~~~a~~~~~~m~-----------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~ 134 (258)
...| ++++|...+++.. ..+...|..+...+.+.|++++|+..|++..+.. +-+...|..+-.++
T Consensus 402 ~~~~--~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~ 477 (681)
T 2pzi_A 402 TVLS--QPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV--GWRWRLVWYRAVAE 477 (681)
T ss_dssp TTTC--CHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--CCCHHHHHHHHHHH
T ss_pred cccc--CHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC--cchHHHHHHHHHHH
Confidence 5566 9999999888664 2466788899999999999999999999884322 23567888888899
Q ss_pred cCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHcCCChHHHHHH
Q 038429 135 ARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK--K-DVVSWNSMISGFVEGGFFEKAIEL 207 (258)
Q Consensus 135 ~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~ 207 (258)
...|++++|...|+.. +.+...|..+-.+|.+.|++++ .+.|++..+ | +...|..+-..+.+.|++++|...
T Consensus 478 ~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 478 LLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999988 5567789999999999999999 999987653 4 667899999999999999999999
Q ss_pred HHHHHHcCCCCC-hhhHHHHHHHHhccCC
Q 038429 208 YREMEVENVKPD-EVTMVVVLSACAKKRD 235 (258)
Q Consensus 208 ~~~m~~~~~~p~-~~t~~~li~~~~~~g~ 235 (258)
|++..+ +.|+ ...+..+..++...|+
T Consensus 557 ~~~al~--l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPP--TSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCT--TSTTHHHHHHHHHHHTC----
T ss_pred HHhhcc--cCcccHHHHHHHHHHHHccCC
Confidence 988665 3465 4567777777766554
No 108
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.45 E-value=5.7e-07 Score=67.69 Aligned_cols=159 Identities=11% Similarity=0.017 Sum_probs=104.9
Q ss_pred hhhhhhhccCCCChHHHHHHhccCCC--C-ChhhHHH----------------HHHHHhcCCChhhHHHHHHHhHhcCCC
Q 038429 60 KLFTPCALSTFSSLEYARKMFDQIPQ--P-NLYTWNT----------------LIRAYSSSDEPIQSFMIFLQLVYNSPY 120 (258)
Q Consensus 60 ~li~~~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~----------------li~~~~~~g~~~~a~~~~~~m~~~~~~ 120 (258)
.....+...| ++++|...|++..+ | +...|.. +...+.+.|++++|+..|++..+..
T Consensus 9 ~~g~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-- 84 (208)
T 3urz_A 9 QKVSAAIEAG--QNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-- 84 (208)
T ss_dssp HHHHHHHHTT--CHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHCC--CHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--
Confidence 3344556677 88888888887654 2 3455666 7888888888888888888873322
Q ss_pred CCCcchHHHHHHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhcCC--HHHHHHHHHhcCCCChhh--HHHHH
Q 038429 121 FPNEFTLPFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGD--LAMAYCVFVMIGKKDVVS--WNSMI 192 (258)
Q Consensus 121 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~~--~~~li 192 (258)
+-+...+..+-.++...|++++|...++.. +.+...|..+-..|...|+ .+.+...+.....|+... +...-
T Consensus 85 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g 164 (208)
T 3urz_A 85 PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDG 164 (208)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence 234567778888888888888888888877 5556677777777765543 445566666666665433 22233
Q ss_pred HHHHcCCChHHHHHHHHHHHHcCCCCChhhHH
Q 038429 193 SGFVEGGFFEKAIELYREMEVENVKPDEVTMV 224 (258)
Q Consensus 193 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~ 224 (258)
.++...|++++|...|++..+ +.|+.....
T Consensus 165 ~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~ 194 (208)
T 3urz_A 165 LSKLFTTRYEKARNSLQKVIL--RFPSTEAQK 194 (208)
T ss_dssp HHHHHHHTHHHHHHHHHHHTT--TSCCHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHH--hCCCHHHHH
Confidence 344556788888888887665 456654433
No 109
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.43 E-value=1.8e-06 Score=64.94 Aligned_cols=52 Identities=8% Similarity=0.117 Sum_probs=24.4
Q ss_pred hhhhhhccCCCChHHHHHHhccCCC---CChhhHHHHHHHHhcCCChhhHHHHHHHh
Q 038429 61 LFTPCALSTFSSLEYARKMFDQIPQ---PNLYTWNTLIRAYSSSDEPIQSFMIFLQL 114 (258)
Q Consensus 61 li~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m 114 (258)
+..++.+.| ++++|...|++..+ .+...|..+...+...|++++|+..|++.
T Consensus 60 lg~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 114 (208)
T 3urz_A 60 LALAYKKNR--NYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKI 114 (208)
T ss_dssp HHHHHHHTT--CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHCC--CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444444444 55555544443321 23444444555555555555555555444
No 110
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.41 E-value=2.9e-06 Score=67.81 Aligned_cols=149 Identities=7% Similarity=-0.104 Sum_probs=80.6
Q ss_pred cccccchhhHHHHHHHHHhhccC-----cchhhhhhhhhhhhccCCCChHHHHHHhccCCC-------C--ChhhHHHHH
Q 038429 30 PHFLTNQKQLKRIHAQMLSTDFF-----FDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ-------P--NLYTWNTLI 95 (258)
Q Consensus 30 ~~~~~~~~~a~~~~~~m~~~~~~-----~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~-------~--~~~~~~~li 95 (258)
+...|++++|...+.+....... ....+|+.+..+|.+.| ++++|...|++..+ + -..+++.+.
T Consensus 46 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g--~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 123 (307)
T 2ifu_A 46 FKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQ--RMPEAVQYIEKASVMYVENGTPDTAAMALDRAG 123 (307)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33445556666666555543111 01235566666666666 66666665554321 1 134566666
Q ss_pred HHHhcCCChhhHHHHHHHhHhc---CCCCC-CcchHHHHHHHhcCcCCcchhhhhhhcc------cCc----hhHHHHHH
Q 038429 96 RAYSSSDEPIQSFMIFLQLVYN---SPYFP-NEFTLPFVIKAAARPVQFRVGQAIHGMF------EDD----LVISNSLI 161 (258)
Q Consensus 96 ~~~~~~g~~~~a~~~~~~m~~~---~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~------~~~----~~~~~~li 161 (258)
..|.+ |++++|+..|++...- .+-.+ ...++..+...+.+.|++++|...++.. .++ ...+..+.
T Consensus 124 ~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g 202 (307)
T 2ifu_A 124 KLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQV 202 (307)
T ss_dssp HHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 66666 7777777777665211 11100 0235566666677777777777666666 111 12445555
Q ss_pred HHHHhcCCHHHHHHHHHhcC
Q 038429 162 HFYAVCGDLAMAYCVFVMIG 181 (258)
Q Consensus 162 ~~~~~~g~~~~a~~~~~~m~ 181 (258)
..+...|++++|...|++..
T Consensus 203 ~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 203 LVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHh
Confidence 55666677777777776543
No 111
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.39 E-value=6.4e-06 Score=62.07 Aligned_cols=170 Identities=11% Similarity=-0.070 Sum_probs=135.3
Q ss_pred hhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC-CChhhHHHHHHHHhcCC----ChhhHHHHH
Q 038429 37 KQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ-PNLYTWNTLIRAYSSSD----EPIQSFMIF 111 (258)
Q Consensus 37 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~-~~~~~~~~li~~~~~~g----~~~~a~~~~ 111 (258)
.+|.+.|....+.| ++..+..|-..|...+ ++++|...|++..+ .+..++..|-..|.. + ++++|+..|
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~--~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSG--DYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 35667777777765 6777888888888888 99999999987654 677888889888888 6 899999999
Q ss_pred HHhHhcCCCCCCcchHHHHHHHhcC----cCCcchhhhhhhcc---cCc---hhHHHHHHHHHHh----cCCHHHHHHHH
Q 038429 112 LQLVYNSPYFPNEFTLPFVIKAAAR----PVQFRVGQAIHGMF---EDD---LVISNSLIHFYAV----CGDLAMAYCVF 177 (258)
Q Consensus 112 ~~m~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~---~~~---~~~~~~li~~~~~----~g~~~~a~~~~ 177 (258)
+.. .+.| +..++..|-..|.. .+++++|...++.. .++ ...+..|-..|.. .++.++|...|
T Consensus 77 ~~A-~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 77 EKA-VEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHH-HHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHH-HHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 998 5544 55677778788877 78999999999988 332 6888899999988 88999999999
Q ss_pred HhcCC--CChhhHHHHHHHHHcC-C-----ChHHHHHHHHHHHHcCC
Q 038429 178 VMIGK--KDVVSWNSMISGFVEG-G-----FFEKAIELYREMEVENV 216 (258)
Q Consensus 178 ~~m~~--~~~~~~~~li~~~~~~-g-----~~~~a~~~~~~m~~~~~ 216 (258)
+...+ .+...+..|-..|... | +.++|...|++..+.|.
T Consensus 153 ~~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 153 KGSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 87643 4666777777777543 3 89999999998887764
No 112
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.37 E-value=5.1e-07 Score=64.30 Aligned_cols=103 Identities=7% Similarity=-0.051 Sum_probs=56.4
Q ss_pred HHHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHcCCChH
Q 038429 130 VIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK--K-DVVSWNSMISGFVEGGFFE 202 (258)
Q Consensus 130 ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~ 202 (258)
+-..|.+.|++++|...++.. +.+...|..+-.+|.+.|++++|...|+...+ | +...|..+...|.+.|+.+
T Consensus 37 la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 116 (150)
T 4ga2_A 37 FAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTD 116 (150)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH
Confidence 333344444444444444333 33455666677777777777777777765543 3 4556666777777777766
Q ss_pred HHHHH-HHHHHHcCCCCC-hhhHHHHHHHHhccC
Q 038429 203 KAIEL-YREMEVENVKPD-EVTMVVVLSACAKKR 234 (258)
Q Consensus 203 ~a~~~-~~~m~~~~~~p~-~~t~~~li~~~~~~g 234 (258)
+|.+. +++..+. .|+ ...|...-..+...|
T Consensus 117 ~aa~~~~~~al~l--~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 117 GRAKYWVERAAKL--FPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp SHHHHHHHHHHHH--STTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhC
Confidence 55544 3555442 343 344554444444444
No 113
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.36 E-value=3e-06 Score=60.41 Aligned_cols=119 Identities=13% Similarity=-0.020 Sum_probs=88.3
Q ss_pred HHHHHHHhcCcCCcchhhhhhhcccCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHcCCChHH
Q 038429 127 LPFVIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK--K-DVVSWNSMISGFVEGGFFEK 203 (258)
Q Consensus 127 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~ 203 (258)
...+.+.+...+.+..+..+ -+.+...+..+-..+.+.|++++|.+.|+...+ | +...|..+-.+|...|++++
T Consensus 12 ~~~l~~~~~~~~~l~~al~l---~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~ 88 (151)
T 3gyz_A 12 STAVIDAINSGATLKDINAI---PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQ 88 (151)
T ss_dssp HHHHHHHHHTSCCTGGGCCS---CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHCCCCHHHHhCC---CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHH
Confidence 34444444444333333221 144556788888888999999999999987753 4 67788888889999999999
Q ss_pred HHHHHHHHHHcCCCC-ChhhHHHHHHHHhccCChhHHHHHHHHHHHcC
Q 038429 204 AIELYREMEVENVKP-DEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250 (258)
Q Consensus 204 a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 250 (258)
|+..|++..+. .| +...|..+-.+|.+.|++++|...|+...+..
T Consensus 89 Ai~~~~~al~l--~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 89 AADLYAVAFAL--GKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHHHHH--SSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999988775 34 45678888889999999999999999887654
No 114
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.35 E-value=2.2e-06 Score=63.51 Aligned_cols=147 Identities=12% Similarity=-0.033 Sum_probs=84.6
Q ss_pred ChHHHHH---HhccCCCCChhhHHHHHHHHhcCCChhhHHHHHHHhHh---cCCCCCCcchHHHHHHHhcCcCCcchhhh
Q 038429 72 SLEYARK---MFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVY---NSPYFPNEFTLPFVIKAAARPVQFRVGQA 145 (258)
Q Consensus 72 ~~~~a~~---~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 145 (258)
++++|.+ ++..-+.....++..+...+...|++++|...+++... ..+..|
T Consensus 7 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----------------------- 63 (203)
T 3gw4_A 7 DYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHT----------------------- 63 (203)
T ss_dssp CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHH-----------------------
T ss_pred cHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcH-----------------------
Confidence 7888888 65543334566778888888888888888888877622 111111
Q ss_pred hhhcccCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----C-C----hhhHHHHHHHHHcCCChHHHHHHHHHHHHc-
Q 038429 146 IHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK-----K-D----VVSWNSMISGFVEGGFFEKAIELYREMEVE- 214 (258)
Q Consensus 146 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~-~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~- 214 (258)
.....++.+-..|...|++++|.+.+.+..+ + + ...+..+-..+...|++++|...+++....
T Consensus 64 ------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 137 (203)
T 3gw4_A 64 ------AEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYA 137 (203)
T ss_dssp ------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 1233455555566666666666665554321 1 1 224555566666667777776666665432
Q ss_pred ---CCCC-ChhhHHHHHHHHhccCChhHHHHHHHHHH
Q 038429 215 ---NVKP-DEVTMVVVLSACAKKRDLEFGIWVSSHIE 247 (258)
Q Consensus 215 ---~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 247 (258)
+-.+ -..++..+...+...|++++|.+.+++..
T Consensus 138 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 138 QQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 1100 12234566666667777777777766554
No 115
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.34 E-value=1.1e-06 Score=62.51 Aligned_cols=135 Identities=4% Similarity=-0.127 Sum_probs=76.2
Q ss_pred CcccccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC---CChhhHHHHHHHHhcCCChh
Q 038429 29 HPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ---PNLYTWNTLIRAYSSSDEPI 105 (258)
Q Consensus 29 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~ 105 (258)
...+.+++++|.+.+....... +-+...+-.+-..|.+.| ++++|...|++..+ .+..+|..+...|.+.|+++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~--~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAK--EYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence 3445566777776666655443 223334455666677777 77777777765532 45667777777777777777
Q ss_pred hHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhh-hhcc----cCchhHHHHHHHHHHhcC
Q 038429 106 QSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAI-HGMF----EDDLVISNSLIHFYAVCG 168 (258)
Q Consensus 106 ~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~~~----~~~~~~~~~li~~~~~~g 168 (258)
+|+..|+...+.. +-+..+|..+...+.+.|+.+++... ++.. +.+..+|......+.+.|
T Consensus 83 ~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 83 KAVECYRRSVELN--PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 7777777663211 12344555566666666665554433 2332 334445554444444444
No 116
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.31 E-value=6.5e-06 Score=58.72 Aligned_cols=126 Identities=12% Similarity=0.033 Sum_probs=82.7
Q ss_pred hhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcccCchhHHHHHHHHHHhcC
Q 038429 89 YTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCG 168 (258)
Q Consensus 89 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~li~~~~~~g 168 (258)
..|..+...+...|++++|...|+...... +.+...+..+...|...|
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------------------------------~~~~~~~~~~a~~~~~~~ 61 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN--------------------------------PSNAIYYGNRSLAYLRTE 61 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------------------------------TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------------------------------CCChHHHHHHHHHHHHcC
Confidence 445666666666677777766666652211 223456667777777788
Q ss_pred CHHHHHHHHHhcCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhH--HHHHHHHhccCChhHHHHHH
Q 038429 169 DLAMAYCVFVMIGK--K-DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTM--VVVLSACAKKRDLEFGIWVS 243 (258)
Q Consensus 169 ~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~--~~li~~~~~~g~~~~a~~~~ 243 (258)
++++|.+.|+...+ | +...|..+...+...|++++|...|++..+.. +.+...+ ......+.+.|++++|...+
T Consensus 62 ~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 140 (166)
T 1a17_A 62 CYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGD 140 (166)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 88888888776543 3 56677777788888888888888888877652 1233344 33333366778888888888
Q ss_pred HHHH
Q 038429 244 SHIE 247 (258)
Q Consensus 244 ~~m~ 247 (258)
....
T Consensus 141 ~~~~ 144 (166)
T 1a17_A 141 EHKR 144 (166)
T ss_dssp HHHH
T ss_pred cchH
Confidence 7654
No 117
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.30 E-value=8.5e-06 Score=59.19 Aligned_cols=112 Identities=10% Similarity=0.052 Sum_probs=53.4
Q ss_pred cCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHH-HHhcCCH--HH
Q 038429 100 SSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHF-YAVCGDL--AM 172 (258)
Q Consensus 100 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~-~~~~g~~--~~ 172 (258)
..|++++|+..++...... +.+...+..+...+...|++++|...++.. +.+...+..+... |...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 3455555555555542211 123344555555555555555555555554 3344445555555 4455555 55
Q ss_pred HHHHHHhcCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHH
Q 038429 173 AYCVFVMIGK--K-DVVSWNSMISGFVEGGFFEKAIELYREMEV 213 (258)
Q Consensus 173 a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 213 (258)
|...|+...+ | +...+..+...|...|++++|...|++..+
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 5555554432 2 334445555555555555555555555544
No 118
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.29 E-value=1.4e-05 Score=63.31 Aligned_cols=152 Identities=5% Similarity=-0.102 Sum_probs=114.2
Q ss_pred hhhhhhhccCCCChHHHHHHhccCCC-----CC----hhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCc----ch
Q 038429 60 KLFTPCALSTFSSLEYARKMFDQIPQ-----PN----LYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNE----FT 126 (258)
Q Consensus 60 ~li~~~~~~~~~~~~~a~~~~~~m~~-----~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~----~~ 126 (258)
..+..+...| ++++|..++++..+ ++ ...+..+...+...|++++|+..|+.......-.++. .+
T Consensus 80 ~~i~~~~~~~--~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 3u3w_A 80 DQVIMLCKQK--RYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHTT--CHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred HHHHHHHHHh--hHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 3466778888 99999999987543 22 1234457777788889999999999983322222232 26
Q ss_pred HHHHHHHhcCcCCcchhhhhhhcc------c-C----chhHHHHHHHHHHhcCCHHHHHHHHHhcCC--------C-Chh
Q 038429 127 LPFVIKAAARPVQFRVGQAIHGMF------E-D----DLVISNSLIHFYAVCGDLAMAYCVFVMIGK--------K-DVV 186 (258)
Q Consensus 127 ~~~ll~~~~~~~~~~~a~~~~~~~------~-~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--------~-~~~ 186 (258)
++.+..+|...|+++.|...++.. . . ...+++.+...|.+.|++++|.+.+++..+ + -..
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~ 237 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 889999999999999999988887 1 1 224788999999999999999999986643 1 145
Q ss_pred hHHHHHHHHHcCCC-hHHHHHHHHHHHH
Q 038429 187 SWNSMISGFVEGGF-FEKAIELYREMEV 213 (258)
Q Consensus 187 ~~~~li~~~~~~g~-~~~a~~~~~~m~~ 213 (258)
+|..+-..|.+.|+ .++|...+++...
T Consensus 238 ~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 78888889999995 6999998887653
No 119
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.28 E-value=1e-05 Score=54.39 Aligned_cols=93 Identities=16% Similarity=0.139 Sum_probs=54.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHh
Q 038429 155 VISNSLIHFYAVCGDLAMAYCVFVMIGK--K-DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231 (258)
Q Consensus 155 ~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~ 231 (258)
..|..+...+.+.|++++|.+.|+++.+ | +...+..+...+...|++++|..+++++.... +.+..++..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence 3455555666666666666666655432 2 44555666666666666666666666665532 224455566666666
Q ss_pred ccCChhHHHHHHHHHHH
Q 038429 232 KKRDLEFGIWVSSHIEK 248 (258)
Q Consensus 232 ~~g~~~~a~~~~~~m~~ 248 (258)
..|++++|...++++.+
T Consensus 89 ~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHH
Confidence 66666666666666554
No 120
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.26 E-value=8.2e-06 Score=54.91 Aligned_cols=95 Identities=16% Similarity=0.212 Sum_probs=66.6
Q ss_pred hhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcccCchhHHHHHHHHHHhc
Q 038429 88 LYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVC 167 (258)
Q Consensus 88 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~li~~~~~~ 167 (258)
...|..+...+.+.|++++|...|+++.... +.+...+..+...+.+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------------------------------~~~~~~~~~la~~~~~~ 56 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------------------------------PNNAEAWYNLGNAYYKQ 56 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------------TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------------------------------cCcHHHHHHHHHHHHHh
Confidence 4566777777777777777777777762211 12344566677777778
Q ss_pred CCHHHHHHHHHhcCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 038429 168 GDLAMAYCVFVMIGK---KDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214 (258)
Q Consensus 168 g~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 214 (258)
|++++|...|+.+.+ .+..++..+...+...|++++|...++++.+.
T Consensus 57 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 57 GDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 888888888776643 35667777888888888888888888887764
No 121
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.24 E-value=2.1e-06 Score=67.43 Aligned_cols=175 Identities=8% Similarity=-0.056 Sum_probs=122.7
Q ss_pred ChHHHHHHhccCCC---CChhhHHHH-------HHHHhcCCChhhHHHHHHHhHhcCCCCCCcc----------------
Q 038429 72 SLEYARKMFDQIPQ---PNLYTWNTL-------IRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF---------------- 125 (258)
Q Consensus 72 ~~~~a~~~~~~m~~---~~~~~~~~l-------i~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~---------------- 125 (258)
+...|.+.|.+... .....|..+ ...+.+.++..+++..+..- -++.|+..
T Consensus 21 d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~---l~l~p~~l~a~~~~~g~y~~~~~~ 97 (282)
T 4f3v_A 21 SEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGS---VQISMSTLNARIAIGGLYGDITYP 97 (282)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHT---TTCCGGGGCCEEECCTTTCCCEEE
T ss_pred CHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHH---hcCChhhhhhhhccCCcccccccc
Confidence 88888888887654 344566666 34455444455555544433 23333211
Q ss_pred ------hHHHHHHHhcCcCCcchhhhhhhcc---cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-C----hhhHHHH
Q 038429 126 ------TLPFVIKAAARPVQFRVGQAIHGMF---EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKK-D----VVSWNSM 191 (258)
Q Consensus 126 ------~~~~ll~~~~~~~~~~~a~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~----~~~~~~l 191 (258)
..-.....+...|++++|..+++.+ .|+......+-..+.+.+++++|+..|+...+. + ...+..+
T Consensus 98 v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~L 177 (282)
T 4f3v_A 98 VTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAH 177 (282)
T ss_dssp CSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHH
T ss_pred cCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHH
Confidence 1234556778889999999999988 444336666677889999999999999866543 2 2367777
Q ss_pred HHHHHcCCChHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHhccCChhHHHHHHHHHHHc
Q 038429 192 ISGFVEGGFFEKAIELYREMEVENVKPD--EVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249 (258)
Q Consensus 192 i~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 249 (258)
-.++...|++++|+..|++.......|. .......-.++.+.|+.++|..+|+++...
T Consensus 178 G~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 178 GVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 8889999999999999998875433254 235666777788899999999999998765
No 122
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.24 E-value=6.1e-06 Score=58.86 Aligned_cols=123 Identities=13% Similarity=-0.029 Sum_probs=82.5
Q ss_pred hhhhhhhhhhhhccCCCChHHHHHHhccCCC---CChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHH
Q 038429 55 PYSASKLFTPCALSTFSSLEYARKMFDQIPQ---PNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVI 131 (258)
Q Consensus 55 ~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll 131 (258)
...+..+...+...| +++.|...|++..+ .+..+|..+...+...|++++|+..|++..... |+
T Consensus 13 ~~~~~~~a~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~---~~-------- 79 (166)
T 1a17_A 13 AEELKTQANDYFKAK--DYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD---KK-------- 79 (166)
T ss_dssp HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TT--------
T ss_pred HHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cc--------
Confidence 456777888888999 99999999987643 578889999999999999999999999883321 21
Q ss_pred HHhcCcCCcchhhhhhhcccCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHH--HHHHHHcCCChHHHHH
Q 038429 132 KAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK--K-DVVSWNS--MISGFVEGGFFEKAIE 206 (258)
Q Consensus 132 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~--li~~~~~~g~~~~a~~ 206 (258)
+...|..+...|.+.|++++|.+.|+...+ | +...+.. +...+...|++++|..
T Consensus 80 ---------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~ 138 (166)
T 1a17_A 80 ---------------------YIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIA 138 (166)
T ss_dssp ---------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223445555566666666666666655432 2 3333322 2223555566667766
Q ss_pred HHHHH
Q 038429 207 LYREM 211 (258)
Q Consensus 207 ~~~~m 211 (258)
.++..
T Consensus 139 ~~~~~ 143 (166)
T 1a17_A 139 GDEHK 143 (166)
T ss_dssp HHHHH
T ss_pred cccch
Confidence 66554
No 123
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.24 E-value=2.9e-05 Score=68.66 Aligned_cols=210 Identities=11% Similarity=-0.044 Sum_probs=124.1
Q ss_pred hhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHH-HHhccCCC---CChhhHHHHHHHHhcCCChhhHHHHH
Q 038429 36 QKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYAR-KMFDQIPQ---PNLYTWNTLIRAYSSSDEPIQSFMIF 111 (258)
Q Consensus 36 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~-~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~ 111 (258)
.+++..+|++++... ......|-..+..+...| +.++|. .+|++... .+...|-..+...-+.|++++|..+|
T Consensus 325 ~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~--~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iy 401 (679)
T 4e6h_A 325 KARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKN--TDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTI 401 (679)
T ss_dssp HHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHS--CCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 455666777776653 335666666666666666 666665 66665432 34444666666667777777777777
Q ss_pred HHhHhc---------CCCCCC------------cchHHHHHHHhcCcCCcchhhhhhhcc--c-C--chhHHHHHHHHHH
Q 038429 112 LQLVYN---------SPYFPN------------EFTLPFVIKAAARPVQFRVGQAIHGMF--E-D--DLVISNSLIHFYA 165 (258)
Q Consensus 112 ~~m~~~---------~~~~p~------------~~~~~~ll~~~~~~~~~~~a~~~~~~~--~-~--~~~~~~~li~~~~ 165 (258)
+..... .+. |+ ..+|...++...+.|+.+.|..+|... . | ....|......-.
T Consensus 402 ek~l~~l~~~~~~~~~~~-p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~ 480 (679)
T 4e6h_A 402 LSCIDRIHLDLAALMEDD-PTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEY 480 (679)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhcc-CcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 776321 011 31 235666666666677777777777776 2 2 1223322222222
Q ss_pred hc-CCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC--ChhhHHHHHHHHhccCChhHH
Q 038429 166 VC-GDLAMAYCVFVMIGK--K-DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKP--DEVTMVVVLSACAKKRDLEFG 239 (258)
Q Consensus 166 ~~-g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~t~~~li~~~~~~g~~~~a 239 (258)
+. ++.+.|.++|+...+ | +...|...+......|+.+.|..+|++.....-.+ ....|...++--.+.|+.+.+
T Consensus 481 ~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~ 560 (679)
T 4e6h_A 481 HISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSV 560 (679)
T ss_dssp TTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHH
T ss_pred HhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 33 347777777766544 3 44555666666666777777777777766543211 224566666666677777777
Q ss_pred HHHHHHHHHc
Q 038429 240 IWVSSHIEKN 249 (258)
Q Consensus 240 ~~~~~~m~~~ 249 (258)
..+.+++.+.
T Consensus 561 ~~v~~R~~~~ 570 (679)
T 4e6h_A 561 RTLEKRFFEK 570 (679)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7777777654
No 124
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.24 E-value=3.1e-06 Score=62.63 Aligned_cols=155 Identities=12% Similarity=-0.042 Sum_probs=101.1
Q ss_pred ccccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC---------CChhhHHHHHHHHhcC
Q 038429 31 HFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ---------PNLYTWNTLIRAYSSS 101 (258)
Q Consensus 31 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~---------~~~~~~~~li~~~~~~ 101 (258)
-..|++++|.+++..+.. .......++..+...+...| ++++|...+++... ....++..+...+...
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 79 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMD--RFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMA 79 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc
Confidence 357889999996555543 22345678888999999999 99999998876542 2456788899999999
Q ss_pred CChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcccCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 038429 102 DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIG 181 (258)
Q Consensus 102 g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 181 (258)
|++++|...+++......-.++.. ......+..+-..+...|++++|.+.+++..
T Consensus 80 g~~~~A~~~~~~al~~~~~~~~~~-------------------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 80 GNWDAARRCFLEERELLASLPEDP-------------------------LAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp TCHHHHHHHHHHHHHHHHHSCCCH-------------------------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCccH-------------------------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 999999999988732211111100 0012345566666777777777777776543
Q ss_pred C-----CC----hhhHHHHHHHHHcCCChHHHHHHHHHHHH
Q 038429 182 K-----KD----VVSWNSMISGFVEGGFFEKAIELYREMEV 213 (258)
Q Consensus 182 ~-----~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 213 (258)
+ .+ ..++..+-..+...|++++|...+++..+
T Consensus 135 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 135 VYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 2 11 22456677777788888888887776543
No 125
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.24 E-value=2e-05 Score=51.96 Aligned_cols=97 Identities=7% Similarity=-0.085 Sum_probs=80.3
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC--ChhhHHHHH
Q 038429 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGK---KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKP--DEVTMVVVL 227 (258)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~t~~~li 227 (258)
+...+..+...+.+.|++++|...|+...+ .+...|..+...+...|++++|...|++..+.. +. +...+..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 456777888889999999999999987643 366788888899999999999999999988753 22 467788899
Q ss_pred HHHhcc-CChhHHHHHHHHHHHcC
Q 038429 228 SACAKK-RDLEFGIWVSSHIEKNG 250 (258)
Q Consensus 228 ~~~~~~-g~~~~a~~~~~~m~~~g 250 (258)
..+.+. |++++|.+.++...+..
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcc
Confidence 999999 99999999999987654
No 126
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.23 E-value=8.1e-06 Score=57.84 Aligned_cols=93 Identities=15% Similarity=-0.028 Sum_probs=48.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 038429 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGK--K-DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230 (258)
Q Consensus 154 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~ 230 (258)
...+..+...+.+.|++++|...|+.... | +...|..+-.+|...|++++|+..|++..... +-+...+..+..++
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHH
Confidence 33444455555555555555555554421 2 44455555555555555555555555554431 11234455555555
Q ss_pred hccCChhHHHHHHHHHH
Q 038429 231 AKKRDLEFGIWVSSHIE 247 (258)
Q Consensus 231 ~~~g~~~~a~~~~~~m~ 247 (258)
...|++++|...|+...
T Consensus 100 ~~~g~~~~A~~~~~~al 116 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQ 116 (148)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 55555555555555544
No 127
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.20 E-value=1.2e-05 Score=67.80 Aligned_cols=168 Identities=9% Similarity=-0.038 Sum_probs=97.6
Q ss_pred HHHhccCCCCChhhHHHHHHHHhcCC---ChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCc----CCcchhhhhhhc
Q 038429 77 RKMFDQIPQPNLYTWNTLIRAYSSSD---EPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARP----VQFRVGQAIHGM 149 (258)
Q Consensus 77 ~~~~~~m~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~----~~~~~a~~~~~~ 149 (258)
..+++...+.+..++..|-..|.+.| +.++|+..|+.. .+.| .++...+..+-..|... +++++|...|+.
T Consensus 165 ~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~a-a~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~ 242 (452)
T 3e4b_A 165 ERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAG-VSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEK 242 (452)
T ss_dssp HHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHH-HHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHH
Confidence 33444444445556667777777777 667777777666 4444 22333334444455443 466666666666
Q ss_pred c-cCchhHHHHHHHH-H--HhcCCHHHHHHHHHhcCCC-ChhhHHHHHHHHHcCC-----ChHHHHHHHHHHHHcCCCCC
Q 038429 150 F-EDDLVISNSLIHF-Y--AVCGDLAMAYCVFVMIGKK-DVVSWNSMISGFVEGG-----FFEKAIELYREMEVENVKPD 219 (258)
Q Consensus 150 ~-~~~~~~~~~li~~-~--~~~g~~~~a~~~~~~m~~~-~~~~~~~li~~~~~~g-----~~~~a~~~~~~m~~~~~~p~ 219 (258)
. +.+...+..|-.. | ...|++++|.+.|++..++ +...+..|-..|. .| +.++|...|++.. . -+
T Consensus 243 aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~ 317 (452)
T 3e4b_A 243 IAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---RE 317 (452)
T ss_dssp HGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TC
T ss_pred HcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CC
Confidence 6 4445555555555 3 3467777777777655443 4555555555555 33 6777777776655 2 24
Q ss_pred hhhHHHHHHHHhc----cCChhHHHHHHHHHHHcCC
Q 038429 220 EVTMVVVLSACAK----KRDLEFGIWVSSHIEKNGI 251 (258)
Q Consensus 220 ~~t~~~li~~~~~----~g~~~~a~~~~~~m~~~g~ 251 (258)
...+..|-..|.. ..+.++|...|+...+.|.
T Consensus 318 ~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 318 VAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp HHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence 4555555555555 3377777777777766653
No 128
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.19 E-value=1.7e-05 Score=54.51 Aligned_cols=94 Identities=9% Similarity=-0.053 Sum_probs=65.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHh
Q 038429 155 VISNSLIHFYAVCGDLAMAYCVFVMIGK--K-DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231 (258)
Q Consensus 155 ~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~ 231 (258)
..+...-..|.+.|++++|.+.|++..+ | +...|..+-.+|.+.|++++|+..|++..+.. +.+...|..+..++.
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence 3566667777777777777777776542 3 56677777777777777777777777766642 123556777777777
Q ss_pred ccCChhHHHHHHHHHHHc
Q 038429 232 KKRDLEFGIWVSSHIEKN 249 (258)
Q Consensus 232 ~~g~~~~a~~~~~~m~~~ 249 (258)
..|++++|.+.|++..+.
T Consensus 93 ~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 777777777777777653
No 129
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.18 E-value=8.1e-06 Score=64.60 Aligned_cols=154 Identities=5% Similarity=-0.138 Sum_probs=114.8
Q ss_pred hhhhhhhhhhccCCCChHHHHHHhccCCC---CC------hhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCC----
Q 038429 57 SASKLFTPCALSTFSSLEYARKMFDQIPQ---PN------LYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPN---- 123 (258)
Q Consensus 57 ~~~~li~~~~~~~~~~~~~a~~~~~~m~~---~~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~---- 123 (258)
.+...+..+...| ++++|...+++..+ .. ...+..+...+...|++++|+..+++......-..+
T Consensus 77 ~l~~~~~~~~~~~--~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 77 QFKDQVIMLCKQK--RYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHTT--CHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHhh--hHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 4455677788888 99999988864321 11 123455667788889999999999887332211112
Q ss_pred cchHHHHHHHhcCcCCcchhhhhhhcc------cCc-----hhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-------
Q 038429 124 EFTLPFVIKAAARPVQFRVGQAIHGMF------EDD-----LVISNSLIHFYAVCGDLAMAYCVFVMIGK--K------- 183 (258)
Q Consensus 124 ~~~~~~ll~~~~~~~~~~~a~~~~~~~------~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~------- 183 (258)
..+|+.+...|...|++++|...++.. .++ ..+++.+...|.+.|++++|.+.+++..+ +
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 347888999999999999999998876 222 25889999999999999999999987543 1
Q ss_pred ChhhHHHHHHHHHcCCChHHH-HHHHHHHH
Q 038429 184 DVVSWNSMISGFVEGGFFEKA-IELYREME 212 (258)
Q Consensus 184 ~~~~~~~li~~~~~~g~~~~a-~~~~~~m~ 212 (258)
-..+|..+-..|.+.|+.++| ...+++..
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 145788888999999999999 77777654
No 130
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.17 E-value=8.8e-06 Score=57.96 Aligned_cols=96 Identities=10% Similarity=-0.046 Sum_probs=63.0
Q ss_pred ChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcccCchhHHHHHHHHHHh
Q 038429 87 NLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAV 166 (258)
Q Consensus 87 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~li~~~~~ 166 (258)
+...+..+...+.+.|++++|+..|+...... +.+...|..+-.+|.+
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--------------------------------P~~~~~~~~lg~~~~~ 82 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD--------------------------------FYNVDYIMGLAAIYQI 82 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------------TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------------------------CCCHHHHHHHHHHHHH
Confidence 44566667777777777777777777762211 2244556666667777
Q ss_pred cCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 038429 167 CGDLAMAYCVFVMIGK--K-DVVSWNSMISGFVEGGFFEKAIELYREMEVE 214 (258)
Q Consensus 167 ~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 214 (258)
.|++++|.+.|+...+ | +...|..+-.+|...|++++|...|++..+.
T Consensus 83 ~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 83 KEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp TTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7777777777765542 3 5566777777777777777777777776664
No 131
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.15 E-value=1.7e-05 Score=53.80 Aligned_cols=116 Identities=11% Similarity=-0.061 Sum_probs=69.0
Q ss_pred hhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcccCchhHHHHHHHHHHhc
Q 038429 88 LYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVC 167 (258)
Q Consensus 88 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~li~~~~~~ 167 (258)
...|..+...+...|++++|+..|++..... +.+...+..+...+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------------------------------~~~~~~~~~~a~~~~~~ 59 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN--------------------------------PANAVYFCNRAAAYSKL 59 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------------TTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--------------------------------CCCHHHHHHHHHHHHHh
Confidence 4455566666666666666666666652211 12334555666666667
Q ss_pred CCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCh
Q 038429 168 GDLAMAYCVFVMIGK--K-DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDL 236 (258)
Q Consensus 168 g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~ 236 (258)
|++++|.+.++...+ | +...+..+...+...|++++|...|++..+.. +.+...+..+...+.+.|++
T Consensus 60 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 60 GNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred hchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 777777777665432 2 45566666677777777777777777766542 12445556666666555553
No 132
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.15 E-value=9.3e-06 Score=55.48 Aligned_cols=28 Identities=4% Similarity=-0.142 Sum_probs=16.0
Q ss_pred ChhhHHHHHHHHhcCCChhhHHHHHHHh
Q 038429 87 NLYTWNTLIRAYSSSDEPIQSFMIFLQL 114 (258)
Q Consensus 87 ~~~~~~~li~~~~~~g~~~~a~~~~~~m 114 (258)
+...|..+...+.+.|++++|+..|++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a 42 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEA 42 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444555555566666666666666555
No 133
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.14 E-value=1.8e-05 Score=54.35 Aligned_cols=99 Identities=9% Similarity=-0.002 Sum_probs=66.5
Q ss_pred hhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcccCchhHHHHHHHHHHhcC
Q 038429 89 YTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCG 168 (258)
Q Consensus 89 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~li~~~~~~g 168 (258)
..|...-..|.+.|++++|+..|++..+.. +.+...|..+-.+|.+.|
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~--------------------------------p~~~~~~~~~~~~~~~~~ 61 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD--------------------------------PENAILYSNRAACLTKLM 61 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------------TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------------------------CCCHHHHHHHhhHHHhhc
Confidence 345566666666666666666666652211 334556777777777888
Q ss_pred CHHHHHHHHHhcCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChh
Q 038429 169 DLAMAYCVFVMIGK---KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEV 221 (258)
Q Consensus 169 ~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 221 (258)
++++|.+.|+...+ .+...|..+-.+|...|++++|...|++..+. .|+..
T Consensus 62 ~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l--~P~~~ 115 (126)
T 4gco_A 62 EFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQV--DPSNE 115 (126)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred cHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CcCCH
Confidence 88888888776543 35667777888888888888888888877763 45443
No 134
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.13 E-value=1.8e-06 Score=68.18 Aligned_cols=186 Identities=8% Similarity=-0.087 Sum_probs=90.7
Q ss_pred hhhhhhhhhhhhccCCCChHHHHHHhccCCC---CChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHH
Q 038429 55 PYSASKLFTPCALSTFSSLEYARKMFDQIPQ---PNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVI 131 (258)
Q Consensus 55 ~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll 131 (258)
...+..+...+.+.| ++++|...|++..+ .+...|..+...|.+.|++++|+..++.. .+.. +-+...+..+.
T Consensus 4 a~~~~~~g~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a-l~~~-p~~~~~~~~lg 79 (281)
T 2c2l_A 4 AQELKEQGNRLFVGR--KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRA-LELD-GQSVKAHFFLG 79 (281)
T ss_dssp HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH-TTSC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHH-HHhC-CCCHHHHHHHH
Confidence 344555555666666 66666666665432 35566666666666666666666666665 2221 22344556666
Q ss_pred HHhcCcCCcchhhhhhhcc---cC-chhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHcCCChHHHHHH
Q 038429 132 KAAARPVQFRVGQAIHGMF---ED-DLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIEL 207 (258)
Q Consensus 132 ~~~~~~~~~~~a~~~~~~~---~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~ 207 (258)
.++...|++++|...++.. .| +...+...+....+..+.......-. ...|+.......+..+. .|+.++|.+.
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~l~~l~-~~~~~~A~~~ 157 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEE-RRIHQESELHSYLTRLI-AAERERELEE 157 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHH-TCCCCCCHHHHHHHHHH-HHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHH-HHHhhhHHHHHHHHHHH-HHHHHHHHHH
Confidence 6666666666666666655 11 11112222222222221122222222 22232222222222222 4666777666
Q ss_pred HHHHHHcCCCCChhhH-HHHHHHHhcc-CChhHHHHHHHHHHH
Q 038429 208 YREMEVENVKPDEVTM-VVVLSACAKK-RDLEFGIWVSSHIEK 248 (258)
Q Consensus 208 ~~~m~~~~~~p~~~t~-~~li~~~~~~-g~~~~a~~~~~~m~~ 248 (258)
+++..+ ..|+.... ..+-..+.+. +.+++|.++|....+
T Consensus 158 ~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 158 CQRNHE--GHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp TSGGGT--TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHhhhc--cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 665443 34544333 2332233333 556777777776643
No 135
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.13 E-value=3.4e-05 Score=52.58 Aligned_cols=93 Identities=12% Similarity=-0.050 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHh
Q 038429 155 VISNSLIHFYAVCGDLAMAYCVFVMIGK--K-DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACA 231 (258)
Q Consensus 155 ~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~ 231 (258)
..|..+...+.+.|++++|.+.|+...+ | +...+..+...+...|++++|...+++..+.. +.+...+..+...+.
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHHH
Confidence 3444455555555555555555544322 2 34445555555555555555555555544431 113344455555555
Q ss_pred ccCChhHHHHHHHHHHH
Q 038429 232 KKRDLEFGIWVSSHIEK 248 (258)
Q Consensus 232 ~~g~~~~a~~~~~~m~~ 248 (258)
+.|++++|.+.+++..+
T Consensus 96 ~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 55555555555555443
No 136
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.12 E-value=6.7e-06 Score=59.74 Aligned_cols=114 Identities=5% Similarity=-0.016 Sum_probs=60.9
Q ss_pred cCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHH-HHcCCCh--HHH
Q 038429 135 ARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK--K-DVVSWNSMISG-FVEGGFF--EKA 204 (258)
Q Consensus 135 ~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~-~~~~g~~--~~a 204 (258)
...|++++|...++.. +.+...|..+...|...|++++|...|+...+ | +...+..+... +...|++ ++|
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 4455566666555554 34445666666666666666666666655432 2 44455555555 4555665 666
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHc
Q 038429 205 IELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249 (258)
Q Consensus 205 ~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 249 (258)
...+++..+.. +-+...+..+...+...|++++|...+++..+.
T Consensus 101 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 101 RAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 66666655532 112344555555666666666666666665543
No 137
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.11 E-value=3.3e-05 Score=64.23 Aligned_cols=157 Identities=7% Similarity=-0.133 Sum_probs=100.9
Q ss_pred HHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcc----hHHHHHHHhcCcCCcchhhhhhhcc----------cCchhH
Q 038429 91 WNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF----TLPFVIKAAARPVQFRVGQAIHGMF----------EDDLVI 156 (258)
Q Consensus 91 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~----------~~~~~~ 156 (258)
+..+...|...|++++|.+.+.......+-.++.. +.+.+-..+...|+.+.+..++... ..-..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 56677777777777777777776632222222221 2233333445556677776666655 112346
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC--------C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHHc--CCC-C-C--hh
Q 038429 157 SNSLIHFYAVCGDLAMAYCVFVMIGK--------K-DVVSWNSMISGFVEGGFFEKAIELYREMEVE--NVK-P-D--EV 221 (258)
Q Consensus 157 ~~~li~~~~~~g~~~~a~~~~~~m~~--------~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~-p-~--~~ 221 (258)
+..+...|...|++++|..+++.... + ....|..++..|...|++++|..++++.... .+. | . ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 77788888888888888888875431 1 2347788888888889999888888776542 121 1 1 24
Q ss_pred hHHHHHHHHhccCChhHHHHHHHHHH
Q 038429 222 TMVVVLSACAKKRDLEFGIWVSSHIE 247 (258)
Q Consensus 222 t~~~li~~~~~~g~~~~a~~~~~~m~ 247 (258)
.+..+...+...|++++|...|.+..
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 56667777788888888888777654
No 138
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.08 E-value=1e-05 Score=65.62 Aligned_cols=155 Identities=10% Similarity=-0.034 Sum_probs=88.2
Q ss_pred ChHHHHHHhccCCC---CChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhh
Q 038429 72 SLEYARKMFDQIPQ---PNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHG 148 (258)
Q Consensus 72 ~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 148 (258)
++++|...++.... .+...|..+...+.+.|++++|+..|++..... |+...+ ..+.+ .
T Consensus 128 ~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~---p~~~~~-----------~~~~~----~ 189 (336)
T 1p5q_A 128 SFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL---EYESSF-----------SNEEA----Q 189 (336)
T ss_dssp EEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT---TTCCCC-----------CSHHH----H
T ss_pred ecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh---hccccC-----------ChHHH----H
Confidence 34445555544332 246678899999999999999999999873322 222100 00000 0
Q ss_pred cc-cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-ChhhH
Q 038429 149 MF-EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK--K-DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKP-DEVTM 223 (258)
Q Consensus 149 ~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~t~ 223 (258)
.. +.....|..+-.+|.+.|++++|...|+...+ | +...|..+-.+|...|++++|...|++..+. .| +...+
T Consensus 190 ~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~ 267 (336)
T 1p5q_A 190 KAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAK 267 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHH
Confidence 00 11234566666666666666666666665432 2 4556666666666666666666666666553 23 33455
Q ss_pred HHHHHHHhccCChhHH-HHHHHHH
Q 038429 224 VVVLSACAKKRDLEFG-IWVSSHI 246 (258)
Q Consensus 224 ~~li~~~~~~g~~~~a-~~~~~~m 246 (258)
..+...+.+.|+.++| ..++..|
T Consensus 268 ~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 268 TQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666665 3344444
No 139
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.07 E-value=1.6e-05 Score=54.61 Aligned_cols=96 Identities=13% Similarity=0.079 Sum_probs=65.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcC--CCCC----hhhHHH
Q 038429 155 VISNSLIHFYAVCGDLAMAYCVFVMIGK--K-DVVSWNSMISGFVEGGFFEKAIELYREMEVEN--VKPD----EVTMVV 225 (258)
Q Consensus 155 ~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~p~----~~t~~~ 225 (258)
..+..+-..|.+.|++++|++.|++..+ | +...|+.+-.+|...|++++|+..+++..+.. ..++ ..+|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 4566677777788888888888876543 3 56677777778888888888888887765531 1111 135666
Q ss_pred HHHHHhccCChhHHHHHHHHHHHcC
Q 038429 226 VLSACAKKRDLEFGIWVSSHIEKNG 250 (258)
Q Consensus 226 li~~~~~~g~~~~a~~~~~~m~~~g 250 (258)
+-.++...|++++|.+.|++..+..
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~~ 113 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSEF 113 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 6677777888888888887766543
No 140
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.05 E-value=4.2e-05 Score=53.50 Aligned_cols=91 Identities=12% Similarity=-0.028 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhc
Q 038429 156 ISNSLIHFYAVCGDLAMAYCVFVMIGK--K-DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAK 232 (258)
Q Consensus 156 ~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~ 232 (258)
.+..+...+.+.|++++|.+.|+.... | +...|..+-..|...|++++|+..|++..... +-+...+..+..++..
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 334444444555555555555544321 2 33444444455555555555555555544432 1123344444455555
Q ss_pred cCChhHHHHHHHHHH
Q 038429 233 KRDLEFGIWVSSHIE 247 (258)
Q Consensus 233 ~g~~~~a~~~~~~m~ 247 (258)
.|++++|...|+...
T Consensus 99 ~g~~~~A~~~~~~al 113 (142)
T 2xcb_A 99 LGDLDGAESGFYSAR 113 (142)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 555555555555443
No 141
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.04 E-value=5.9e-05 Score=51.32 Aligned_cols=95 Identities=9% Similarity=-0.041 Sum_probs=66.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 038429 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGK--K-DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230 (258)
Q Consensus 154 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~ 230 (258)
...|..+-..+.+.|++++|.+.|+...+ | +...|..+-.+|...|++++|+..+++..+.. +-+...|..+..++
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 34566666777778888888888776543 3 56677777777788888888888887776642 12355677777777
Q ss_pred hccCChhHHHHHHHHHHHc
Q 038429 231 AKKRDLEFGIWVSSHIEKN 249 (258)
Q Consensus 231 ~~~g~~~~a~~~~~~m~~~ 249 (258)
...|++++|...+++..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 7888888888877776543
No 142
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.03 E-value=8.5e-05 Score=51.09 Aligned_cols=93 Identities=8% Similarity=-0.140 Sum_probs=48.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 038429 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGK--K-DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230 (258)
Q Consensus 154 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~ 230 (258)
...|..+...+.+.|++++|...|....+ | +...|..+...+...|++++|...+++..+.. +.+...+..+...+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ 87 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHHH
Confidence 34455555555555555555555554322 2 34455555555555555555555555555432 11334455555555
Q ss_pred hccCChhHHHHHHHHHH
Q 038429 231 AKKRDLEFGIWVSSHIE 247 (258)
Q Consensus 231 ~~~g~~~~a~~~~~~m~ 247 (258)
...|++++|...+++..
T Consensus 88 ~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 88 LEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHH
Confidence 55555555555555544
No 143
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.02 E-value=0.00023 Score=56.72 Aligned_cols=210 Identities=7% Similarity=-0.073 Sum_probs=148.4
Q ss_pred hhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC---CChhhHHHHHHHH----hcC---CChh
Q 038429 36 QKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ---PNLYTWNTLIRAY----SSS---DEPI 105 (258)
Q Consensus 36 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~----~~~---g~~~ 105 (258)
-++|.++.+.++..+ +-+..+|+.--.++...+..++++++..++.+.. .+..+|+.--..+ ... ++++
T Consensus 49 s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 49 SERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred CHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 357788888777665 2234455543333333221288999999887654 4556677665555 445 7899
Q ss_pred hHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcc--hhhhhhhcc----cCchhHHHHHHHHHHhcCC------HHHH
Q 038429 106 QSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFR--VGQAIHGMF----EDDLVISNSLIHFYAVCGD------LAMA 173 (258)
Q Consensus 106 ~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~--~a~~~~~~~----~~~~~~~~~li~~~~~~g~------~~~a 173 (258)
+++.+++.+.... +-|-.+|+----.+.+.|.++ ++...++.+ +.+-..|+.-...+.+.|+ ++++
T Consensus 128 ~EL~~~~~~l~~~--pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 128 REFDILEAMLSSD--PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHH
Confidence 9999999994322 345566665555556666777 777777777 6778889888877877776 8888
Q ss_pred HHHHHhcCC--C-ChhhHHHHHHHHHcCCChHH-HHHHHHHHHHcC--CCCChhhHHHHHHHHhccCChhHHHHHHHHHH
Q 038429 174 YCVFVMIGK--K-DVVSWNSMISGFVEGGFFEK-AIELYREMEVEN--VKPDEVTMVVVLSACAKKRDLEFGIWVSSHIE 247 (258)
Q Consensus 174 ~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~~--~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 247 (258)
.+.++.... | |...|+-+-..+.+.|+..+ +..+.++....+ -..+...+..+.+.+.+.|+.++|.++++.+.
T Consensus 206 l~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 206 LNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp HHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 888876643 4 88899988888888887444 555666655432 12466788999999999999999999999987
Q ss_pred H
Q 038429 248 K 248 (258)
Q Consensus 248 ~ 248 (258)
+
T Consensus 286 ~ 286 (306)
T 3dra_A 286 S 286 (306)
T ss_dssp H
T ss_pred h
Confidence 5
No 144
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.01 E-value=4.2e-06 Score=62.14 Aligned_cols=167 Identities=9% Similarity=-0.046 Sum_probs=94.2
Q ss_pred hhhhhccCCCChHHHHHHhccCCC---CChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcC
Q 038429 62 FTPCALSTFSSLEYARKMFDQIPQ---PNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPV 138 (258)
Q Consensus 62 i~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~ 138 (258)
+......+ +++.+.+.++.-.. .....+..+...+.+.|++++|+..|++......-.|+.... .+..
T Consensus 11 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~--~~~~----- 81 (198)
T 2fbn_A 11 SSGRENLY--FQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQ--ILLD----- 81 (198)
T ss_dssp -------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCH--HHHH-----
T ss_pred hhhhhhhh--hccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchh--hHHH-----
Confidence 33444455 77777777764432 345668888889999999999999999883322212211000 0000
Q ss_pred CcchhhhhhhcccCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHHcC
Q 038429 139 QFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK---KDVVSWNSMISGFVEGGFFEKAIELYREMEVEN 215 (258)
Q Consensus 139 ~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 215 (258)
-.. ......|..+..+|.+.|++++|...++...+ .+...|..+-.+|...|++++|...|++..+.
T Consensus 82 ----~~~-----~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~- 151 (198)
T 2fbn_A 82 ----KKK-----NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL- 151 (198)
T ss_dssp ----HHH-----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-
T ss_pred ----HHH-----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-
Confidence 000 01135667777778888888888888876543 35667777778888888888888888887664
Q ss_pred CCC-ChhhHHHHHHHHhccCChhHHH-HHHHHHHH
Q 038429 216 VKP-DEVTMVVVLSACAKKRDLEFGI-WVSSHIEK 248 (258)
Q Consensus 216 ~~p-~~~t~~~li~~~~~~g~~~~a~-~~~~~m~~ 248 (258)
.| +...+..+...+...++.+++. ..+..+..
T Consensus 152 -~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 152 -NPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp -STTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred -CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34 4456666666776667776666 44554443
No 145
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.01 E-value=3e-05 Score=62.74 Aligned_cols=111 Identities=14% Similarity=0.023 Sum_probs=87.4
Q ss_pred CcCCcchhhhhhhcc------cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC----------------hhhHHHH
Q 038429 136 RPVQFRVGQAIHGMF------EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK--KD----------------VVSWNSM 191 (258)
Q Consensus 136 ~~~~~~~a~~~~~~~------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~----------------~~~~~~l 191 (258)
..++++.|...++.. .+.. +..+-..|.+.|++++|...|++..+ |+ ...|..+
T Consensus 125 ~L~~~~~A~~~~~~a~~~~p~~a~~--~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nl 202 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEKLEQSTI--VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNL 202 (336)
T ss_dssp EEEEEECCCCGGGCCHHHHHHHHHH--HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHHHHHHHHHH--HHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHH
Confidence 345666676666655 1222 34567778889999999999987653 43 4789999
Q ss_pred HHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHc
Q 038429 192 ISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249 (258)
Q Consensus 192 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 249 (258)
-.+|.+.|++++|+..+++..+.. +.+...|..+..+|...|++++|...|++..+.
T Consensus 203 a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 259 (336)
T 1p5q_A 203 AMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 259 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 999999999999999999988753 235678999999999999999999999998765
No 146
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.00 E-value=6.2e-05 Score=50.88 Aligned_cols=97 Identities=5% Similarity=-0.114 Sum_probs=82.5
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 038429 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGK--K-DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLS 228 (258)
Q Consensus 152 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~ 228 (258)
.+...+..+...+...|++++|.+.|+...+ | +...|..+...+...|++++|...+++..... +.+...+..+..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 3456788888999999999999999987643 3 67788899999999999999999999988753 234678888999
Q ss_pred HHhccCChhHHHHHHHHHHHc
Q 038429 229 ACAKKRDLEFGIWVSSHIEKN 249 (258)
Q Consensus 229 ~~~~~g~~~~a~~~~~~m~~~ 249 (258)
.+.+.|++++|...+++..+.
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHhc
Confidence 999999999999999998765
No 147
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.00 E-value=6.5e-05 Score=53.79 Aligned_cols=91 Identities=11% Similarity=-0.010 Sum_probs=64.9
Q ss_pred cchHHHHHHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHH
Q 038429 124 EFTLPFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK--K-DVVSWNSMISGFV 196 (258)
Q Consensus 124 ~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~ 196 (258)
...+..+...+.+.|++++|...|+.. +.+...|..+..+|.+.|++++|...|+...+ | +...|..+-..|.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 345666677777777777777777776 44666777777777777777777777776543 3 5667777777777
Q ss_pred cCCChHHHHHHHHHHHHc
Q 038429 197 EGGFFEKAIELYREMEVE 214 (258)
Q Consensus 197 ~~g~~~~a~~~~~~m~~~ 214 (258)
..|++++|...|++..+.
T Consensus 91 ~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHh
Confidence 777777777777776654
No 148
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.99 E-value=0.00012 Score=50.81 Aligned_cols=97 Identities=11% Similarity=-0.024 Sum_probs=62.7
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC----hhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHH
Q 038429 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGK--KD----VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVV 225 (258)
Q Consensus 152 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ 225 (258)
.+...+..+...+.+.|++++|.+.|+...+ |+ ...|..+...|...|++++|...+++..+.. +.+...+..
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 104 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYR 104 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHH
Confidence 3455666666777777777777777766543 43 4556666667777777777777777666542 124455666
Q ss_pred HHHHHhccCChhHHHHHHHHHHHc
Q 038429 226 VLSACAKKRDLEFGIWVSSHIEKN 249 (258)
Q Consensus 226 li~~~~~~g~~~~a~~~~~~m~~~ 249 (258)
+..++...|++++|...+++..+.
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Confidence 666777777777777777766543
No 149
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.99 E-value=7.3e-05 Score=49.55 Aligned_cols=95 Identities=12% Similarity=-0.078 Sum_probs=61.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 038429 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGK--K-DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230 (258)
Q Consensus 154 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~ 230 (258)
...+..+...+...|++++|.+.|+...+ | +...+..+...+...|++++|...+++..+.. +.+...+..+...+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 34556666677777777777777766532 3 55566666667777777777777777766542 12355666666777
Q ss_pred hccCChhHHHHHHHHHHHc
Q 038429 231 AKKRDLEFGIWVSSHIEKN 249 (258)
Q Consensus 231 ~~~g~~~~a~~~~~~m~~~ 249 (258)
...|++++|.+.+++..+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 7777777777777766543
No 150
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.99 E-value=1.5e-05 Score=62.57 Aligned_cols=187 Identities=5% Similarity=-0.168 Sum_probs=128.0
Q ss_pred cccchhhHHHHHHHHHhhccCcchhhhhhhh-------hhhhccCCCChHHHHHHhccCCC--C-------C--------
Q 038429 32 FLTNQKQLKRIHAQMLSTDFFFDPYSASKLF-------TPCALSTFSSLEYARKMFDQIPQ--P-------N-------- 87 (258)
Q Consensus 32 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li-------~~~~~~~~~~~~~a~~~~~~m~~--~-------~-------- 87 (258)
..++...|.+.|..+.+.. +-....|..++ .++.+.+ +..++...+..-.. | +
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~--r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAW--YSRRNFGQLSGSVQISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHH--HTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHH--HHHHHHHHHHHHhcCChhhhhhhhccCCccccc
Confidence 4689999999999999886 33466676663 3333322 22222222221111 1 1
Q ss_pred -------hhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc--cCc----h
Q 038429 88 -------LYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF--EDD----L 154 (258)
Q Consensus 88 -------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~--~~~----~ 154 (258)
...+-.....+...|++++|.++|+.+ ...+ |+......+-..+.+.+++++|+..++.. .++ .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~-~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAA-PVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSS-CCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHH-HhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHH
Confidence 112345677888899999999999888 5433 54336666666889999999999999887 232 2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-----hhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHH
Q 038429 155 VISNSLIHFYAVCGDLAMAYCVFVMIG-KKD-----VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVV 226 (258)
Q Consensus 155 ~~~~~li~~~~~~g~~~~a~~~~~~m~-~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~l 226 (258)
..+..+-.++.+.|++++|++.|++.. .|. .......-.++.+.|+.++|..+|+++... .|+...+..|
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~~~~~~aL 247 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPEPKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHHHHHH
Confidence 367788899999999999999999874 232 224556667788999999999999999885 4663333333
No 151
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.96 E-value=3.7e-05 Score=50.57 Aligned_cols=96 Identities=8% Similarity=-0.100 Sum_probs=64.8
Q ss_pred ChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcccCchhHHHHHHHHHHh
Q 038429 87 NLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAV 166 (258)
Q Consensus 87 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~li~~~~~ 166 (258)
+...|..+...+.+.|++++|...|++..... +.+...|..+...|.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--------------------------------~~~~~~~~~~a~~~~~ 52 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD--------------------------------PEESKYWLMKGKALYN 52 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC--------------------------------CCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC--------------------------------cCCHHHHHHHHHHHHH
Confidence 34455555666666666666666666552211 2344566777777888
Q ss_pred cCCHHHHHHHHHhcCC--C---ChhhHHHHHHHHHcC-CChHHHHHHHHHHHHc
Q 038429 167 CGDLAMAYCVFVMIGK--K---DVVSWNSMISGFVEG-GFFEKAIELYREMEVE 214 (258)
Q Consensus 167 ~g~~~~a~~~~~~m~~--~---~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~ 214 (258)
.|++++|.+.|+...+ | +...+..+...+... |++++|.+.+++....
T Consensus 53 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 53 LERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp TTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred ccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 8888888888876543 3 466777888888888 8888888888887765
No 152
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.94 E-value=0.00011 Score=65.15 Aligned_cols=195 Identities=10% Similarity=-0.022 Sum_probs=134.6
Q ss_pred ccccchhhHH-HHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC-------------CC---------
Q 038429 31 HFLTNQKQLK-RIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ-------------PN--------- 87 (258)
Q Consensus 31 ~~~~~~~~a~-~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~-------------~~--------- 87 (258)
.+.|+.+.|. +++....... +.+...|-..+...-+.| +++.|..+|+.... |+
T Consensus 354 ~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~--~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~ 430 (679)
T 4e6h_A 354 GEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNT--KIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLK 430 (679)
T ss_dssp HHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhc
Confidence 3456667775 8888887543 455666677777777788 88888888886642 21
Q ss_pred ---hhhHHHHHHHHhcCCChhhHHHHHHHhHhcC-C-CCCCcchHHHHHHHhcCcCCcchhhhhhhcc----cCchhHHH
Q 038429 88 ---LYTWNTLIRAYSSSDEPIQSFMIFLQLVYNS-P-YFPNEFTLPFVIKAAARPVQFRVGQAIHGMF----EDDLVISN 158 (258)
Q Consensus 88 ---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~ 158 (258)
...|-..++...+.|..+.|..+|.+. .+. + ..+......+.+.-. ..++.+.|..+|+.. +.+...|.
T Consensus 431 ~~~~~vWi~y~~~erR~~~l~~AR~vf~~A-~~~~~~~~~~lyi~~A~lE~~-~~~d~e~Ar~ife~~Lk~~p~~~~~w~ 508 (679)
T 4e6h_A 431 SKLTYVYCVYMNTMKRIQGLAASRKIFGKC-RRLKKLVTPDIYLENAYIEYH-ISKDTKTACKVLELGLKYFATDGEYIN 508 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-HHTGGGSCTHHHHHHHHHHHT-TTSCCHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhcCCCChHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHCCCchHHHH
Confidence 235777777777888888999999888 433 1 222222222223222 234588888888877 55666777
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC--C----ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhc
Q 038429 159 SLIHFYAVCGDLAMAYCVFVMIGK--K----DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAK 232 (258)
Q Consensus 159 ~li~~~~~~g~~~~a~~~~~~m~~--~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~ 232 (258)
..++.....|+.+.|..+|+.... | ....|...+.--...|+.+.+..+.+++.+. .|+......+++-|.-
T Consensus 509 ~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ry~~ 586 (679)
T 4e6h_A 509 KYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTNKYKV 586 (679)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHHHTCB
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHhcC
Confidence 888888888899999999987765 2 2346778888778889998999999888876 3666666666666643
No 153
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.92 E-value=3.3e-05 Score=52.37 Aligned_cols=60 Identities=12% Similarity=0.161 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-C-------hhhHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 038429 155 VISNSLIHFYAVCGDLAMAYCVFVMIGK--K-D-------VVSWNSMISGFVEGGFFEKAIELYREMEVE 214 (258)
Q Consensus 155 ~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~-------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 214 (258)
..+..+...|...|++++|...|+...+ | + ..+|..+...+...|++++|...|++..+.
T Consensus 39 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 39 TYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3455555566666666666666655432 1 1 445666666666777777777777666653
No 154
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.92 E-value=8e-05 Score=55.08 Aligned_cols=119 Identities=8% Similarity=-0.148 Sum_probs=88.8
Q ss_pred HHHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-Ch----------------h
Q 038429 130 VIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK--K-DV----------------V 186 (258)
Q Consensus 130 ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~----------------~ 186 (258)
........|+++.+...++.- ......+..+-..+.+.|++++|.+.|+...+ | +. .
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 89 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEIS 89 (198)
T ss_dssp ------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH
Confidence 344556677888888888876 33456778888899999999999999987643 2 32 6
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHc
Q 038429 187 SWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249 (258)
Q Consensus 187 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 249 (258)
.|..+-.+|...|++++|+..+++..+.. +.+...+..+..++...|++++|.+.|++..+.
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 78888899999999999999999988752 235678889999999999999999999988764
No 155
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.92 E-value=6.4e-05 Score=50.88 Aligned_cols=97 Identities=11% Similarity=0.021 Sum_probs=81.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHHcC--CCCC----hhhHH
Q 038429 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGK---KDVVSWNSMISGFVEGGFFEKAIELYREMEVEN--VKPD----EVTMV 224 (258)
Q Consensus 154 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~p~----~~t~~ 224 (258)
...|..+...+...|++++|...|+...+ .+...+..+...+...|++++|...+++..... ..++ ...+.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 45678888999999999999999987653 367788889999999999999999999987653 1222 66788
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHcC
Q 038429 225 VVLSACAKKRDLEFGIWVSSHIEKNG 250 (258)
Q Consensus 225 ~li~~~~~~g~~~~a~~~~~~m~~~g 250 (258)
.+...+.+.|++++|.+.+++..+..
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 88999999999999999999988754
No 156
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.88 E-value=4.9e-05 Score=53.73 Aligned_cols=61 Identities=10% Similarity=-0.104 Sum_probs=36.2
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHH
Q 038429 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGK--K-DVVSWNSMISGFVEGGFFEKAIELYREMEV 213 (258)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 213 (258)
+...|..+-.+|.+.|++++|.+.|+.... | +...|..+-.+|...|++++|...|++..+
T Consensus 54 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 54 DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555555566666666666666665432 3 445566666666666666666666666554
No 157
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.85 E-value=8.4e-05 Score=61.74 Aligned_cols=154 Identities=10% Similarity=-0.028 Sum_probs=111.9
Q ss_pred HHHHhcCCChhhHHHHHHHhHhcCCCCCCc---------------chHHHHHHHhcCcCCcchhhhhhhcc------cCc
Q 038429 95 IRAYSSSDEPIQSFMIFLQLVYNSPYFPNE---------------FTLPFVIKAAARPVQFRVGQAIHGMF------EDD 153 (258)
Q Consensus 95 i~~~~~~g~~~~a~~~~~~m~~~~~~~p~~---------------~~~~~ll~~~~~~~~~~~a~~~~~~~------~~~ 153 (258)
...+.+.|++++|++.|....+...-..+. .++..+...|...|++++|...+... .++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 455677899999999999884443322222 13778899999999999999988887 112
Q ss_pred h----hHHHHHHHHHHhcCCHHHHHHHHHhcCC--------C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHHc--CC--
Q 038429 154 L----VISNSLIHFYAVCGDLAMAYCVFVMIGK--------K-DVVSWNSMISGFVEGGFFEKAIELYREMEVE--NV-- 216 (258)
Q Consensus 154 ~----~~~~~li~~~~~~g~~~~a~~~~~~m~~--------~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~-- 216 (258)
. .+.+.+-..+...|+.++|.+++..... + -..++..+...|...|++++|..++++.... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 2233333444567899999998876532 1 1346788899999999999999999987654 21
Q ss_pred CCC-hhhHHHHHHHHhccCChhHHHHHHHHHHH
Q 038429 217 KPD-EVTMVVVLSACAKKRDLEFGIWVSSHIEK 248 (258)
Q Consensus 217 ~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 248 (258)
+|. ...+..+.+.|...|++++|..+++....
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 122 34688899999999999999999987653
No 158
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.85 E-value=4.9e-05 Score=53.42 Aligned_cols=134 Identities=12% Similarity=0.022 Sum_probs=89.6
Q ss_pred hhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcccCchhHHHHHHHHHHhcC
Q 038429 89 YTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCG 168 (258)
Q Consensus 89 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~li~~~~~~g 168 (258)
.++..+...+...|++++|+..+++......-.++. ..-..++..+...|...|
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~--------------------------~~~~~~~~~l~~~~~~~g 63 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK--------------------------AAERIAYSNLGNAYIFLG 63 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH--------------------------HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCc--------------------------hHHHHHHHHHHHHHHHcC
Confidence 456777777778888888888887762211000000 001235666777778888
Q ss_pred CHHHHHHHHHhcCC-----CC----hhhHHHHHHHHHcCCChHHHHHHHHHHHHc----CCCC-ChhhHHHHHHHHhccC
Q 038429 169 DLAMAYCVFVMIGK-----KD----VVSWNSMISGFVEGGFFEKAIELYREMEVE----NVKP-DEVTMVVVLSACAKKR 234 (258)
Q Consensus 169 ~~~~a~~~~~~m~~-----~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~t~~~li~~~~~~g 234 (258)
++++|.+.++...+ ++ ...+..+-..+...|++++|...+++..+. +-.+ ....+..+...+...|
T Consensus 64 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g 143 (164)
T 3ro3_A 64 EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALG 143 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHcc
Confidence 88888888776543 11 346777778888889999999888876543 2111 1346778888889999
Q ss_pred ChhHHHHHHHHHHH
Q 038429 235 DLEFGIWVSSHIEK 248 (258)
Q Consensus 235 ~~~~a~~~~~~m~~ 248 (258)
++++|.+.+++..+
T Consensus 144 ~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 144 NHDQAMHFAEKHLE 157 (164)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999988764
No 159
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.85 E-value=5.7e-05 Score=51.38 Aligned_cols=94 Identities=7% Similarity=-0.052 Sum_probs=62.3
Q ss_pred hhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcccCchhHHHHHHHHHHhcC
Q 038429 89 YTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCG 168 (258)
Q Consensus 89 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~li~~~~~~g 168 (258)
..|..+...+.+.|++++|+..|++..... +.+...|..+..+|.+.|
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------------------------------p~~~~~~~~~a~~~~~~~ 52 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA--------------------------------PEDARGYSNRAAALAKLM 52 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------------TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------------------------------CCChHHHHHHHHHHHHhc
Confidence 345566666667777777777776652211 233456667777777777
Q ss_pred CHHHHHHHHHhcCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 038429 169 DLAMAYCVFVMIGK--K-DVVSWNSMISGFVEGGFFEKAIELYREMEVE 214 (258)
Q Consensus 169 ~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 214 (258)
++++|.+.|+...+ | +...|..+-..+...|++++|...|++..+.
T Consensus 53 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 53 SFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHh
Confidence 77777777766543 3 5567777777777888888888888776653
No 160
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.84 E-value=2.3e-05 Score=55.23 Aligned_cols=131 Identities=13% Similarity=0.000 Sum_probs=89.2
Q ss_pred hhhhhhhhhhhhccCCCChHHHHHHhccCCC-----CC----hhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcc
Q 038429 55 PYSASKLFTPCALSTFSSLEYARKMFDQIPQ-----PN----LYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF 125 (258)
Q Consensus 55 ~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~-----~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~ 125 (258)
..++..+...+...| ++++|...+++..+ .+ ..++..+...+...|++++|...+++......-.++.
T Consensus 9 ~~~~~~l~~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~- 85 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLG--NFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR- 85 (164)
T ss_dssp HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-
T ss_pred HHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc-
Confidence 346778888888999 99999999987653 22 2478889999999999999999998873211000110
Q ss_pred hHHHHHHHhcCcCCcchhhhhhhcccCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----C----ChhhHHHHHHHHH
Q 038429 126 TLPFVIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK-----K----DVVSWNSMISGFV 196 (258)
Q Consensus 126 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~----~~~~~~~li~~~~ 196 (258)
......+..+...+...|++++|.+.+++..+ . ....+..+...+.
T Consensus 86 -------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 140 (164)
T 3ro3_A 86 -------------------------AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYT 140 (164)
T ss_dssp -------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred -------------------------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHH
Confidence 01133455666677777777777777765432 1 2345667777778
Q ss_pred cCCChHHHHHHHHHHHH
Q 038429 197 EGGFFEKAIELYREMEV 213 (258)
Q Consensus 197 ~~g~~~~a~~~~~~m~~ 213 (258)
..|++++|...+++..+
T Consensus 141 ~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 141 ALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 88888888888877654
No 161
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.84 E-value=7.9e-05 Score=51.26 Aligned_cols=96 Identities=8% Similarity=-0.099 Sum_probs=62.6
Q ss_pred CChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcccCchhHHHHHHHHHH
Q 038429 86 PNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYA 165 (258)
Q Consensus 86 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~li~~~~ 165 (258)
.+...|..+...+...|++++|+..|+...... +.+...|..+..+|.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------------------------------~~~~~~~~~l~~~~~ 54 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN--------------------------------PLVAVYYTNRALCYL 54 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------------TTCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--------------------------------cCcHHHHHHHHHHHH
Confidence 345556666666666666666666666652211 233456666777777
Q ss_pred hcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHH
Q 038429 166 VCGDLAMAYCVFVMIGK--K-DVVSWNSMISGFVEGGFFEKAIELYREMEV 213 (258)
Q Consensus 166 ~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 213 (258)
..|++++|...|+...+ | +...|..+-..+...|++++|...|++..+
T Consensus 55 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 55 KMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 77777777777766543 3 556777777777788888888887777655
No 162
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.82 E-value=0.00015 Score=47.99 Aligned_cols=95 Identities=14% Similarity=-0.011 Sum_probs=61.4
Q ss_pred hhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcccCchhHHHHHHHHHHhc
Q 038429 88 LYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVC 167 (258)
Q Consensus 88 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~li~~~~~~ 167 (258)
...|..+...+...|++++|...|+...... +.+...+..+...|.+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------------------------------~~~~~~~~~~a~~~~~~ 51 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD--------------------------------PHNHVLYSNRSAAYAKK 51 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------------TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--------------------------------CCcHHHHHHHHHHHHhh
Confidence 3456666777777777777777777662211 22344556666667777
Q ss_pred CCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 038429 168 GDLAMAYCVFVMIGK--K-DVVSWNSMISGFVEGGFFEKAIELYREMEVE 214 (258)
Q Consensus 168 g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 214 (258)
|++++|...++...+ | +...+..+...+...|++++|...+++..+.
T Consensus 52 ~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 52 GDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 777777777765532 3 4556677777777777777777777776653
No 163
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.81 E-value=7.4e-05 Score=52.18 Aligned_cols=93 Identities=11% Similarity=-0.136 Sum_probs=54.3
Q ss_pred hhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcccCchhHHHHHHHHHHhcC
Q 038429 89 YTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCG 168 (258)
Q Consensus 89 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~li~~~~~~g 168 (258)
..+..+...+.+.|++++|+..|+...... +.+...|..+-.+|.+.|
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--------------------------------p~~~~~~~~lg~~~~~~g 66 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD--------------------------------HYDARYFLGLGACRQSLG 66 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------------TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC--------------------------------CccHHHHHHHHHHHHHHh
Confidence 445555566666677777766666652211 223444555556666666
Q ss_pred CHHHHHHHHHhcCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHH
Q 038429 169 DLAMAYCVFVMIGK--K-DVVSWNSMISGFVEGGFFEKAIELYREMEV 213 (258)
Q Consensus 169 ~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 213 (258)
++++|...|+...+ | +...|..+-.+|...|++++|...|++..+
T Consensus 67 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 67 LYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp CHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666666665432 2 445566666666666666666666666554
No 164
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.80 E-value=0.00032 Score=47.55 Aligned_cols=88 Identities=8% Similarity=-0.022 Sum_probs=50.7
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC--CCh----hhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC----hhhHHHHHHH
Q 038429 160 LIHFYAVCGDLAMAYCVFVMIGK--KDV----VSWNSMISGFVEGGFFEKAIELYREMEVENVKPD----EVTMVVVLSA 229 (258)
Q Consensus 160 li~~~~~~g~~~~a~~~~~~m~~--~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~t~~~li~~ 229 (258)
+...+.+.|++++|.+.|+...+ |+. ..+..+...+...|++++|...|++..... |+ ...+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHH
Confidence 44455566666666666665432 322 245555566666666666666666665532 32 3345555666
Q ss_pred HhccCChhHHHHHHHHHHHc
Q 038429 230 CAKKRDLEFGIWVSSHIEKN 249 (258)
Q Consensus 230 ~~~~g~~~~a~~~~~~m~~~ 249 (258)
+.+.|++++|...++++.+.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 66666666666666666543
No 165
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.79 E-value=0.0001 Score=50.51 Aligned_cols=102 Identities=9% Similarity=-0.021 Sum_probs=65.8
Q ss_pred hhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcccCchhHHHHHHHHHHhcC
Q 038429 89 YTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCG 168 (258)
Q Consensus 89 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~li~~~~~~g 168 (258)
.++..+-..+.+.|++++|+..|++...- . +.+...|+.+-.+|.+.|
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~---~-----------------------------p~~~~~~~nlg~~~~~~~ 56 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIEL---D-----------------------------PSNITFYNNKAAVYFEEK 56 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---C-----------------------------TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---C-----------------------------CCCHHHHHhHHHHHHHhh
Confidence 34566666777777777777777665221 1 234556677777777778
Q ss_pred CHHHHHHHHHhcCC--C-C-------hhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHH
Q 038429 169 DLAMAYCVFVMIGK--K-D-------VVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMV 224 (258)
Q Consensus 169 ~~~~a~~~~~~m~~--~-~-------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~ 224 (258)
++++|++.|+...+ | + ..+|..+-..+...|++++|++.|++.... .||..+..
T Consensus 57 ~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~ 120 (127)
T 4gcn_A 57 KFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVK 120 (127)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHH
Confidence 88888777766543 2 1 135666667777888888888888877653 45654443
No 166
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.79 E-value=0.00014 Score=49.45 Aligned_cols=92 Identities=12% Similarity=-0.023 Sum_probs=74.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHh
Q 038429 156 ISNSLIHFYAVCGDLAMAYCVFVMIGK--K-DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKP-DEVTMVVVLSACA 231 (258)
Q Consensus 156 ~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~ 231 (258)
.+..+...+.+.|++++|...|+...+ | +...|..+-..+...|++++|+..|++..+. .| +...+..+...+.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 345566778889999999999987754 4 6678888888899999999999999988775 35 4567888888899
Q ss_pred ccCChhHHHHHHHHHHHc
Q 038429 232 KKRDLEFGIWVSSHIEKN 249 (258)
Q Consensus 232 ~~g~~~~a~~~~~~m~~~ 249 (258)
+.|++++|...+++..+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999988653
No 167
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.77 E-value=5.8e-05 Score=64.17 Aligned_cols=119 Identities=5% Similarity=-0.105 Sum_probs=91.5
Q ss_pred CCccCcccccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC---CChhhHHHHHHHHhcC
Q 038429 25 GHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ---PNLYTWNTLIRAYSSS 101 (258)
Q Consensus 25 ~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~ 101 (258)
.....+.+.|++++|.+.+++..+.. +.+...+..+..+|.+.| ++++|...+++..+ .+..+|..+..+|.+.
T Consensus 11 ~lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~ 87 (477)
T 1wao_1 11 TQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTE--CYGYALGDATRAIELDKKYIKGYYRRAASNMAL 87 (477)
T ss_dssp SSSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 33447778899999999999999875 446888999999999999 99999999987643 5678899999999999
Q ss_pred CChhhHHHHHHHhHhcCCCCCCcchHHHHHHH--hcCcCCcchhhhhhh
Q 038429 102 DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKA--AARPVQFRVGQAIHG 148 (258)
Q Consensus 102 g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~--~~~~~~~~~a~~~~~ 148 (258)
|++++|+..|++..+.. +-+...+..+..+ +.+.|++++|...++
T Consensus 88 g~~~eA~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 88 GKFRAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp TCHHHHHHHHHHHHHHS--TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999984432 2233455555555 778899999998887
No 168
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.75 E-value=4e-05 Score=65.13 Aligned_cols=119 Identities=9% Similarity=-0.139 Sum_probs=92.9
Q ss_pred hhhhhhhhhhhccCCCChHHHHHHhccCCC---CChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHH
Q 038429 56 YSASKLFTPCALSTFSSLEYARKMFDQIPQ---PNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIK 132 (258)
Q Consensus 56 ~~~~~li~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~ 132 (258)
..+..+...+.+.| ++++|...|++..+ .+..+|..+..+|.+.|++++|+..+++. .+.. +-+..++..+..
T Consensus 7 ~~~~~lg~~~~~~g--~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a-l~l~-p~~~~~~~~lg~ 82 (477)
T 1wao_1 7 EELKTQANDYFKAK--DYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRA-IELD-KKYIKGYYRRAA 82 (477)
T ss_dssp TTSSSSSSSTTTTT--CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHSC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--CHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHH-HHhC-CCCHHHHHHHHH
Confidence 34556667777888 99999999987643 56889999999999999999999999998 4332 335678889999
Q ss_pred HhcCcCCcchhhhhhhcc----cCchhHHHHHHHH--HHhcCCHHHHHHHHH
Q 038429 133 AAARPVQFRVGQAIHGMF----EDDLVISNSLIHF--YAVCGDLAMAYCVFV 178 (258)
Q Consensus 133 ~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~--~~~~g~~~~a~~~~~ 178 (258)
++...|++++|...++.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 83 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 83 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999988 4455566666666 888999999999998
No 169
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.74 E-value=0.00018 Score=51.45 Aligned_cols=94 Identities=11% Similarity=-0.146 Sum_probs=74.1
Q ss_pred ChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc----cCchhHHHHHHH
Q 038429 87 NLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIH 162 (258)
Q Consensus 87 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~ 162 (258)
+...|..+...+.+.|++++|+..|++..... +-+...|..+..++.+.|++++|...++.. +.+...|..+-.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 45677888888888899999998888873322 235667888888888888998888888887 556778888888
Q ss_pred HHHhcCCHHHHHHHHHhcCC
Q 038429 163 FYAVCGDLAMAYCVFVMIGK 182 (258)
Q Consensus 163 ~~~~~g~~~~a~~~~~~m~~ 182 (258)
+|.+.|++++|.+.|++..+
T Consensus 88 ~~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHH
Confidence 88889999999888887653
No 170
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.72 E-value=4.3e-05 Score=65.03 Aligned_cols=115 Identities=6% Similarity=-0.119 Sum_probs=81.9
Q ss_pred hcCcCCcchhhhhhhcc-----------cC-chhHHHHHHHHHHhcCCHHHHHHHHHhcCC----------C-ChhhHHH
Q 038429 134 AARPVQFRVGQAIHGMF-----------ED-DLVISNSLIHFYAVCGDLAMAYCVFVMIGK----------K-DVVSWNS 190 (258)
Q Consensus 134 ~~~~~~~~~a~~~~~~~-----------~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----------~-~~~~~~~ 190 (258)
+...|++++|+.+++.. .| ...+++.|...|...|++++|..++++..+ | ...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44667777776666555 23 345788888899999999998888876542 2 3357888
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHc---CCCCC----hhhHHHHHHHHhccCChhHHHHHHHHHHH
Q 038429 191 MISGFVEGGFFEKAIELYREMEVE---NVKPD----EVTMVVVLSACAKKRDLEFGIWVSSHIEK 248 (258)
Q Consensus 191 li~~~~~~g~~~~a~~~~~~m~~~---~~~p~----~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 248 (258)
|-..|...|++++|+.++++..+- -+.|| ..+.+.+-.++...|.++.|..++.++++
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999888876431 13333 23455566667778889999999988865
No 171
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.72 E-value=0.00036 Score=48.33 Aligned_cols=100 Identities=9% Similarity=-0.077 Sum_probs=66.4
Q ss_pred CChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcccCchhHHHHHHHHHH
Q 038429 86 PNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYA 165 (258)
Q Consensus 86 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~li~~~~ 165 (258)
.+...+..+...+...|++++|+..|++. .+. .|+.. .....|..+...|.
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a-~~~--~~~~~--------------------------~~~~~~~~~a~~~~ 76 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQA-LGL--DATPQ--------------------------DQAVLHRNRAACHL 76 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHH-HTS--CCCHH--------------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHH-HHH--cccch--------------------------HHHHHHHHHHHHHH
Confidence 45667778888888888888888888877 332 23310 00345556666677
Q ss_pred hcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 038429 166 VCGDLAMAYCVFVMIGK--K-DVVSWNSMISGFVEGGFFEKAIELYREMEVE 214 (258)
Q Consensus 166 ~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 214 (258)
..|++++|.+.++...+ | +...|..+...+...|++++|...|++..+.
T Consensus 77 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 77 KLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 77777777777765432 3 5556667777777777788887777777654
No 172
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=97.65 E-value=0.0021 Score=51.18 Aligned_cols=175 Identities=5% Similarity=-0.076 Sum_probs=132.4
Q ss_pred chhhHHHHHHHHHhhccCcchhhhhhhhhhh----hcc---CCCChHHHHHHhccCCC---CChhhHHHHHHHHhcCCCh
Q 038429 35 NQKQLKRIHAQMLSTDFFFDPYSASKLFTPC----ALS---TFSSLEYARKMFDQIPQ---PNLYTWNTLIRAYSSSDEP 104 (258)
Q Consensus 35 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~----~~~---~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~ 104 (258)
+++++.++++.+...+ +-+..+|+.--..+ ... + +++++..+++.+.+ .|..+|+.--..+.+.|.+
T Consensus 84 ~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~--~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~ 160 (306)
T 3dra_A 84 NLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDF--DPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLH 160 (306)
T ss_dssp CHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCC--CTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCT
T ss_pred cHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccc
Confidence 8999999999999876 44566666544444 444 5 88999999887754 6888899888888888988
Q ss_pred h--hHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCC------cchhhhhhhcc----cCchhHHHHHHHHHHhcCCHHH
Q 038429 105 I--QSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQ------FRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAM 172 (258)
Q Consensus 105 ~--~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~------~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~ 172 (258)
+ ++++.++.+ .+.+ +-|-.+|+---..+.+.++ ++++...+... +.|...|+.+-..+.+.|+...
T Consensus 161 ~~~~EL~~~~~~-i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~ 238 (306)
T 3dra_A 161 NDAKELSFVDKV-IDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSIT 238 (306)
T ss_dssp TCHHHHHHHHHH-HHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGG
T ss_pred ChHHHHHHHHHH-HHhC-CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChH
Confidence 8 999999999 4433 3456677665555555555 66666666555 7888999999999999988544
Q ss_pred -HHHHHHhcCC------CChhhHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 038429 173 -AYCVFVMIGK------KDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214 (258)
Q Consensus 173 -a~~~~~~m~~------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 214 (258)
+.++.....+ ++...+..+...|.+.|+.++|.++++.+.+.
T Consensus 239 ~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~ 287 (306)
T 3dra_A 239 QLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSK 287 (306)
T ss_dssp GGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 4455555432 36678889999999999999999999998763
No 173
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.61 E-value=8.9e-05 Score=63.10 Aligned_cols=119 Identities=6% Similarity=-0.086 Sum_probs=90.6
Q ss_pred HHHhcCCChhhHHHHHHHhHh--cCCCCCC----cchHHHHHHHhcCcCCcchhhhhhhcc-----------cCc-hhHH
Q 038429 96 RAYSSSDEPIQSFMIFLQLVY--NSPYFPN----EFTLPFVIKAAARPVQFRVGQAIHGMF-----------EDD-LVIS 157 (258)
Q Consensus 96 ~~~~~~g~~~~a~~~~~~m~~--~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~-----------~~~-~~~~ 157 (258)
..+...|++++|+.++++... ..-+.|+ ..+++.|..+|...|++++|+.+++.. .|+ ..++
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 345678999999999877632 2222232 346889999999999999998888776 344 4589
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC-------CC----hhhHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 038429 158 NSLIHFYAVCGDLAMAYCVFVMIGK-------KD----VVSWNSMISGFVEGGFFEKAIELYREMEVE 214 (258)
Q Consensus 158 ~~li~~~~~~g~~~~a~~~~~~m~~-------~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 214 (258)
+.|-..|...|++++|+.++++..+ || ..+.+.+-.++...+.+.+|+.++.++++.
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998876642 32 235566777888889999999999998763
No 174
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.61 E-value=0.0002 Score=60.53 Aligned_cols=118 Identities=4% Similarity=-0.148 Sum_probs=62.2
Q ss_pred ChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCC-------------cchHHHHHHHhcCcCCcchhhhhhhcc---
Q 038429 87 NLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPN-------------EFTLPFVIKAAARPVQFRVGQAIHGMF--- 150 (258)
Q Consensus 87 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-------------~~~~~~ll~~~~~~~~~~~a~~~~~~~--- 150 (258)
....|..+...+.+.|++++|+..|++......-.++ ...|..+-.++.+.|++++|...++..
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 4557888999999999999999999987332211111 234444444444555555554444444
Q ss_pred -cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHcCCChHHH
Q 038429 151 -EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK--K-DVVSWNSMISGFVEGGFFEKA 204 (258)
Q Consensus 151 -~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a 204 (258)
+.+...|..+-.+|...|++++|...|+...+ | +...+..+-..+.+.++.+++
T Consensus 347 ~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 347 DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444455555555555555444332 2 333444444444444444433
No 175
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.60 E-value=3.3e-05 Score=52.05 Aligned_cols=102 Identities=8% Similarity=-0.142 Sum_probs=71.8
Q ss_pred cccchhhHHHHHHHHHhhc--cCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC---CChhhHHHHHHHHhcCCChhh
Q 038429 32 FLTNQKQLKRIHAQMLSTD--FFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ---PNLYTWNTLIRAYSSSDEPIQ 106 (258)
Q Consensus 32 ~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~ 106 (258)
..|++++|...+...++.+ -+.+...+..+..++...| ++++|...|++..+ .+...+..+..++.+.|++++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLG--EYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHH
Confidence 3578889999999998864 2345667888888999999 99999999987643 467788889999999999999
Q ss_pred HHHHHHHhHhcCCCCCCcchHHHHHHHhc
Q 038429 107 SFMIFLQLVYNSPYFPNEFTLPFVIKAAA 135 (258)
Q Consensus 107 a~~~~~~m~~~~~~~p~~~~~~~ll~~~~ 135 (258)
|+..|++......-.|+...|...+..+.
T Consensus 80 A~~~~~~al~~~p~~~~~~~~~~ai~~~~ 108 (117)
T 3k9i_A 80 GVELLLKIIAETSDDETIQSYKQAILFYA 108 (117)
T ss_dssp HHHHHHHHHHHHCCCHHHHHTHHHHHHHT
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 99999887443332333333444444443
No 176
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.58 E-value=0.00023 Score=48.30 Aligned_cols=59 Identities=12% Similarity=-0.074 Sum_probs=29.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHH
Q 038429 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGK--K-DVVSWNSMISGFVEGGFFEKAIELYREME 212 (258)
Q Consensus 154 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 212 (258)
...|..+-.++.+.|++++|...|++..+ | +...+..+...+...|++++|...+++..
T Consensus 51 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al 112 (121)
T 1hxi_A 51 EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33444444555555555555555544332 2 33445555555555555555555555544
No 177
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.55 E-value=0.0008 Score=52.83 Aligned_cols=92 Identities=11% Similarity=-0.130 Sum_probs=67.0
Q ss_pred CcchHHHHHHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHH
Q 038429 123 NEFTLPFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK--K-DVVSWNSMISGF 195 (258)
Q Consensus 123 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~ 195 (258)
+...+..+...+.+.|++++|...++.. +.+...|..+..+|.+.|++++|.+.++...+ | +...+..+-.+|
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3445666777777788888888777776 44666777777888888888888888876654 3 556677777777
Q ss_pred HcCCChHHHHHHHHHHHHc
Q 038429 196 VEGGFFEKAIELYREMEVE 214 (258)
Q Consensus 196 ~~~g~~~~a~~~~~~m~~~ 214 (258)
...|++++|+..|++..+.
T Consensus 83 ~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 8888888888888776553
No 178
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.54 E-value=0.00067 Score=45.88 Aligned_cols=95 Identities=11% Similarity=-0.033 Sum_probs=58.8
Q ss_pred HHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcccCchhHHHHHHHHHHhcCCH
Q 038429 91 WNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDL 170 (258)
Q Consensus 91 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~ 170 (258)
+..+...+.+.|++++|...|+...... |+.. .....+..+..+|.+.|++
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~---p~~~--------------------------~~~~~~~~lg~~~~~~~~~ 55 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELY---PNGV--------------------------YTPNALYWLGESYYATRNF 55 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC---SSST--------------------------THHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHC---CCCc--------------------------ccHHHHHHHHHHHHHhccH
Confidence 3445566667777777777777763222 2211 0012455566667777777
Q ss_pred HHHHHHHHhcCC--CC----hhhHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 038429 171 AMAYCVFVMIGK--KD----VVSWNSMISGFVEGGFFEKAIELYREMEVE 214 (258)
Q Consensus 171 ~~a~~~~~~m~~--~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 214 (258)
++|...|+...+ |+ ...+..+...+...|++++|...|++....
T Consensus 56 ~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 56 QLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 777777776543 32 345666677777788888888888777664
No 179
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.53 E-value=0.0015 Score=52.91 Aligned_cols=210 Identities=8% Similarity=-0.006 Sum_probs=139.4
Q ss_pred chhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC---CChhhHHHHHHHHhcC-C-ChhhHHH
Q 038429 35 NQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ---PNLYTWNTLIRAYSSS-D-EPIQSFM 109 (258)
Q Consensus 35 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~-g-~~~~a~~ 109 (258)
.-++|.++.+.++..+ +-+..+|+.--.++...+ .++++++..++.+.. .+..+|+.--..+.+. + ++++++.
T Consensus 69 ~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~-~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 69 KSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLN-KSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred CCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence 3456777777777665 334555665555555555 148899988887653 5677788877777766 6 8899999
Q ss_pred HHHHhHhcCCCCCCcchHHHHHHHhcCcCCcc--------hhhhhhhcc----cCchhHHHHHHHHHHhcCC-------H
Q 038429 110 IFLQLVYNSPYFPNEFTLPFVIKAAARPVQFR--------VGQAIHGMF----EDDLVISNSLIHFYAVCGD-------L 170 (258)
Q Consensus 110 ~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~--------~a~~~~~~~----~~~~~~~~~li~~~~~~g~-------~ 170 (258)
+++.+ .+.. +-|-.+|+--.-.+.+.+.++ ++....+.+ +.|...|+..-..+.+.++ +
T Consensus 147 ~~~k~-L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~ 224 (349)
T 3q7a_A 147 YIHGS-LLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSL 224 (349)
T ss_dssp HHHHH-TSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHH
T ss_pred HHHHH-HHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHH
Confidence 99999 4332 335556654444444444454 566666655 6788899999888888876 6
Q ss_pred HHHHHHHHhcC--CC-ChhhHHHHHHHHHcCCCh--------------------HHHHHHHHHHHHcC-----CCCChhh
Q 038429 171 AMAYCVFVMIG--KK-DVVSWNSMISGFVEGGFF--------------------EKAIELYREMEVEN-----VKPDEVT 222 (258)
Q Consensus 171 ~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~--------------------~~a~~~~~~m~~~~-----~~p~~~t 222 (258)
+++.+.+++.. .| |...|+-+-..+.+.|+. .+......++...+ -.++...
T Consensus 225 ~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~a 304 (349)
T 3q7a_A 225 QDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLA 304 (349)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHH
Confidence 78888887654 34 778888877777666653 22223322222221 1256677
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHH
Q 038429 223 MVVVLSACAKKRDLEFGIWVSSHIEK 248 (258)
Q Consensus 223 ~~~li~~~~~~g~~~~a~~~~~~m~~ 248 (258)
...+.+.|...|+.++|.++++.+.+
T Consensus 305 l~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 305 LEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 89999999999999999999999863
No 180
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.41 E-value=8e-05 Score=50.10 Aligned_cols=61 Identities=16% Similarity=0.037 Sum_probs=44.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 038429 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGK--K-DVVSWNSMISGFVEGGFFEKAIELYREMEVE 214 (258)
Q Consensus 154 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 214 (258)
...+..+...|.+.|++++|.+.|++..+ | +...+..+..++...|++++|+..+++....
T Consensus 27 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 27 AECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34666777777788888888888876643 3 5567777777788888888888888776654
No 181
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.38 E-value=0.00065 Score=57.36 Aligned_cols=121 Identities=9% Similarity=-0.054 Sum_probs=97.9
Q ss_pred cchHHHHHHHhcCcCCcchhhhhhhcc----cCc---------------hhHHHHHHHHHHhcCCHHHHHHHHHhcCC--
Q 038429 124 EFTLPFVIKAAARPVQFRVGQAIHGMF----EDD---------------LVISNSLIHFYAVCGDLAMAYCVFVMIGK-- 182 (258)
Q Consensus 124 ~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~---------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~-- 182 (258)
...|..+-..+.+.|+++.|...|+.. +.+ ...|..+-.+|.+.|++++|...|+...+
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 346777888899999999999999988 333 57899999999999999999999987754
Q ss_pred C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHhccCChhHHHH-HHHHH
Q 038429 183 K-DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKP-DEVTMVVVLSACAKKRDLEFGIW-VSSHI 246 (258)
Q Consensus 183 ~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~g~~~~a~~-~~~~m 246 (258)
| +...|..+-.+|...|++++|...|++..+. .| +...+..+...+.+.|+.+++.. ++..|
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 7788999999999999999999999998764 45 44678888888888888887763 44444
No 182
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.38 E-value=0.00051 Score=55.56 Aligned_cols=144 Identities=8% Similarity=-0.087 Sum_probs=69.5
Q ss_pred hhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcccCchhHHHHHHHHHHhc
Q 038429 88 LYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVC 167 (258)
Q Consensus 88 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~li~~~~~~ 167 (258)
...|..+...+.+.|++++|+..|++.... .|+... +...++.+++..-+ ....|+.+-.+|.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~-------~~~~~~~~~~~~~l-----~~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDFM-------FQLYGKYQDMALAV-----KNPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHHH-------HTCCHHHHHHHHHH-----HTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccchh-------hhhcccHHHHHHHH-----HHHHHHHHHHHHHHc
Confidence 445777778888888888888888876222 122211 11222222221111 123667777777788
Q ss_pred CCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChh-hHHHHHHH-HhccCChhHHHHH
Q 038429 168 GDLAMAYCVFVMIGK--K-DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEV-TMVVVLSA-CAKKRDLEFGIWV 242 (258)
Q Consensus 168 g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-t~~~li~~-~~~~g~~~~a~~~ 242 (258)
|++++|...|+...+ | +...|..+-.+|...|++++|...|++..+. .|+.. .+..+... ....+..+.+..+
T Consensus 244 g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------------
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888877776543 3 5667777777888888888888887776542 34432 33333333 2334566677777
Q ss_pred HHHHHH
Q 038429 243 SSHIEK 248 (258)
Q Consensus 243 ~~~m~~ 248 (258)
|..|..
T Consensus 322 ~~~~l~ 327 (338)
T 2if4_A 322 YKGIFK 327 (338)
T ss_dssp ------
T ss_pred HHHhhC
Confidence 777653
No 183
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.34 E-value=0.0013 Score=46.68 Aligned_cols=88 Identities=10% Similarity=-0.032 Sum_probs=47.9
Q ss_pred hHHHHHHHhcCcCCcchhhhhhhcc--c--------------------CchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-
Q 038429 126 TLPFVIKAAARPVQFRVGQAIHGMF--E--------------------DDLVISNSLIHFYAVCGDLAMAYCVFVMIGK- 182 (258)
Q Consensus 126 ~~~~ll~~~~~~~~~~~a~~~~~~~--~--------------------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~- 182 (258)
.+...-..+.+.|+++.|...|... . .+...|..+..+|.+.|++++|...++...+
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 3445555556666666665555554 0 0123555555566666666666666554432
Q ss_pred -C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHH
Q 038429 183 -K-DVVSWNSMISGFVEGGFFEKAIELYREMEV 213 (258)
Q Consensus 183 -~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 213 (258)
| +...|..+-.+|...|++++|...|++...
T Consensus 93 ~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 93 EETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 2 445555555666666666666666655554
No 184
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.32 E-value=0.0017 Score=46.22 Aligned_cols=94 Identities=10% Similarity=-0.078 Sum_probs=73.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC--------h-----hhHHHHHHHHHcCCChHHHHHHHHHHHHc-----
Q 038429 155 VISNSLIHFYAVCGDLAMAYCVFVMIGK--KD--------V-----VSWNSMISGFVEGGFFEKAIELYREMEVE----- 214 (258)
Q Consensus 155 ~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~--------~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~----- 214 (258)
..+...-..+.+.|++++|.+.|+...+ |+ . ..|+.+-.++.+.|++++|+..+++..+.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 3455666777888999999998886653 33 2 28888888999999999999999888763
Q ss_pred CCCCCh-hhH----HHHHHHHhccCChhHHHHHHHHHHH
Q 038429 215 NVKPDE-VTM----VVVLSACAKKRDLEFGIWVSSHIEK 248 (258)
Q Consensus 215 ~~~p~~-~t~----~~li~~~~~~g~~~~a~~~~~~m~~ 248 (258)
.+.|+. ..| ...-.++...|++++|...|++..+
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 236764 467 8888899999999999999998764
No 185
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.20 E-value=0.0007 Score=54.72 Aligned_cols=94 Identities=11% Similarity=-0.082 Sum_probs=68.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCh------------------hhHHHHHHHHHcCCChHHHHHHHHHHHH
Q 038429 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGK--KDV------------------VSWNSMISGFVEGGFFEKAIELYREMEV 213 (258)
Q Consensus 154 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~------------------~~~~~li~~~~~~g~~~~a~~~~~~m~~ 213 (258)
...+..+-..+.+.|++++|...|....+ |+. ..|+.+-.+|.+.|++++|+..+++..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 258 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT 258 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455555555555555555555554322 211 3788889999999999999999999887
Q ss_pred cCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHH
Q 038429 214 ENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEK 248 (258)
Q Consensus 214 ~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 248 (258)
.. +-+...|..+-.+|...|++++|...|++..+
T Consensus 259 ~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 259 EE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 53 23567899999999999999999999998754
No 186
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.19 E-value=0.00097 Score=43.64 Aligned_cols=89 Identities=8% Similarity=-0.018 Sum_probs=65.5
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC-------hhh
Q 038429 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGK--K-DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPD-------EVT 222 (258)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-------~~t 222 (258)
+...+..+-..+.+.|++++|.+.|+...+ | +...|..+-.++...|++++|+..+++..+. .|+ ...
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~ 80 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHHH
Confidence 456777888888999999999999987643 3 6678888888999999999999999988764 455 334
Q ss_pred HHHHHHHHhccCChhHHHHHH
Q 038429 223 MVVVLSACAKKRDLEFGIWVS 243 (258)
Q Consensus 223 ~~~li~~~~~~g~~~~a~~~~ 243 (258)
+..+..++...|+.+.|...+
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHHhHhhhHhHH
Confidence 555555555566665554433
No 187
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.09 E-value=0.00094 Score=54.73 Aligned_cols=115 Identities=3% Similarity=-0.178 Sum_probs=62.9
Q ss_pred HHHHHHHHhcCCChhhHHHHHHHhHhcC--------------CCCCCcchHHHHHHHhcCcCCcchhhhhhhcc----cC
Q 038429 91 WNTLIRAYSSSDEPIQSFMIFLQLVYNS--------------PYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF----ED 152 (258)
Q Consensus 91 ~~~li~~~~~~g~~~~a~~~~~~m~~~~--------------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~ 152 (258)
|..+...+.+.|++++|+..|++..+.. --+-+..+|..+..++.+.|++++|...++.. +.
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 305 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS 305 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch
Confidence 4445555555555555555555542100 00112344555555566666666666555555 33
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHcCCChHHHH
Q 038429 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGK--K-DVVSWNSMISGFVEGGFFEKAI 205 (258)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~ 205 (258)
+...|..+-.+|.+.|++++|.+.|++..+ | +...+..+-..+...++.+++.
T Consensus 306 ~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 306 NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777777777777777766543 3 4445555555555555555444
No 188
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.07 E-value=0.0023 Score=52.40 Aligned_cols=112 Identities=9% Similarity=-0.033 Sum_probs=82.8
Q ss_pred HHHHHHHhcCcCCcchhhhhhhcc-c-------------------CchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-
Q 038429 127 LPFVIKAAARPVQFRVGQAIHGMF-E-------------------DDLVISNSLIHFYAVCGDLAMAYCVFVMIGK--K- 183 (258)
Q Consensus 127 ~~~ll~~~~~~~~~~~a~~~~~~~-~-------------------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~- 183 (258)
+..+-..+.+.|++++|...++.. . .+...|..+..+|.+.|++++|.+.++...+ |
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 305 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS 305 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch
Confidence 566667778888888888777665 1 2346788888888899999999998887654 3
Q ss_pred ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHhccCChhHHH
Q 038429 184 DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKP-DEVTMVVVLSACAKKRDLEFGI 240 (258)
Q Consensus 184 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~g~~~~a~ 240 (258)
+...|..+-.+|...|++++|+..|++..+. .| +...+..+-..+...++.+++.
T Consensus 306 ~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 306 NTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5667888888889999999999999887764 35 4455666666666666666554
No 189
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.07 E-value=0.019 Score=46.11 Aligned_cols=212 Identities=8% Similarity=-0.024 Sum_probs=136.5
Q ss_pred cccch-hhHHHHHHHHHhhccCcchhhhhhh---hhhhhccCC-----CChHHHHHHhccCCC---CChhhHHHHHHHHh
Q 038429 32 FLTNQ-KQLKRIHAQMLSTDFFFDPYSASKL---FTPCALSTF-----SSLEYARKMFDQIPQ---PNLYTWNTLIRAYS 99 (258)
Q Consensus 32 ~~~~~-~~a~~~~~~m~~~~~~~~~~~~~~l---i~~~~~~~~-----~~~~~a~~~~~~m~~---~~~~~~~~li~~~~ 99 (258)
+.|.. ++|.++.+.+...+. -+..+|+.- +....+... ..++++..+++.+.. .+..+|+.--..+.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP-~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 119 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 33443 367888888887652 234445432 322222110 015667777766543 57788888888888
Q ss_pred cCC--ChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCC-cchhhhhhhcc----cCchhHHHHHHHHHHhc-----
Q 038429 100 SSD--EPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQ-FRVGQAIHGMF----EDDLVISNSLIHFYAVC----- 167 (258)
Q Consensus 100 ~~g--~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~----~~~~~~~~~li~~~~~~----- 167 (258)
+.| .+++++.+++.+. +.. +-|-.+|+----++...|. ++++...+..+ +.|...|+.....+.+.
T Consensus 120 ~l~~~~~~~EL~~~~k~l-~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~ 197 (331)
T 3dss_A 120 RLPEPNWARELELCARFL-EAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD 197 (331)
T ss_dssp HCSSCCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC-
T ss_pred ccCcccHHHHHHHHHHHH-HhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccc
Confidence 877 4899999999994 332 3456666655555555666 46777776666 77888898887777765
Q ss_pred ---------CCHHHHHHHHHhcC--CC-ChhhHHHHHHHHHcC-----------CChHHHHHHHHHHHHcCCCCChhhHH
Q 038429 168 ---------GDLAMAYCVFVMIG--KK-DVVSWNSMISGFVEG-----------GFFEKAIELYREMEVENVKPDEVTMV 224 (258)
Q Consensus 168 ---------g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~-----------g~~~~a~~~~~~m~~~~~~p~~~t~~ 224 (258)
+.++++.+.+.... .| |...|+-+-..+... +.++++++.++++.+. .||. .|.
T Consensus 198 ~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~--~pd~-~w~ 274 (331)
T 3dss_A 198 SGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL--EPEN-KWC 274 (331)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH--CTTC-HHH
T ss_pred cccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh--Cccc-chH
Confidence 45778888887654 35 778888665555555 4578889999998874 4664 232
Q ss_pred H-----HHHHHhccCChhHHHHHHHHHHHc
Q 038429 225 V-----VLSACAKKRDLEFGIWVSSHIEKN 249 (258)
Q Consensus 225 ~-----li~~~~~~g~~~~a~~~~~~m~~~ 249 (258)
. +..+....|..+++...+.++++.
T Consensus 275 l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 275 LLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 2 222233467778888888888753
No 190
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.03 E-value=0.0047 Score=55.55 Aligned_cols=150 Identities=11% Similarity=-0.018 Sum_probs=90.4
Q ss_pred ccCCCChHHHHH-HhccCCCCChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhh
Q 038429 67 LSTFSSLEYARK-MFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQA 145 (258)
Q Consensus 67 ~~~~~~~~~a~~-~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 145 (258)
..+ ++++|.+ ++..++ +......++..+.+.|.+++|+.+.++- . .-.......|+++.|.+
T Consensus 611 ~~~--~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~~~~a~~~~~~~-~------------~~f~~~l~~~~~~~A~~ 673 (814)
T 3mkq_A 611 LRG--EIEEAIENVLPNVE--GKDSLTKIARFLEGQEYYEEALNISPDQ-D------------QKFELALKVGQLTLARD 673 (814)
T ss_dssp HTT--CHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTCHHHHHHHCCCH-H------------HHHHHHHHHTCHHHHHH
T ss_pred HhC--CHHHHHHHHHhcCC--chHHHHHHHHHHHhCCChHHheecCCCc-c------------hheehhhhcCCHHHHHH
Confidence 355 8888888 665543 1222377888888888888887665322 1 11233456788888888
Q ss_pred hhhcccCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHH
Q 038429 146 IHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVV 225 (258)
Q Consensus 146 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ 225 (258)
+.+.+ .+...|..+-..+.+.|+++.|++.|..+.. |..+...|...|+.+...++-+.....| -++.
T Consensus 674 ~~~~~-~~~~~W~~la~~al~~~~~~~A~~~y~~~~d-----~~~l~~l~~~~~~~~~~~~~~~~a~~~~------~~~~ 741 (814)
T 3mkq_A 674 LLTDE-SAEMKWRALGDASLQRFNFKLAIEAFTNAHD-----LESLFLLHSSFNNKEGLVTLAKDAETTG------KFNL 741 (814)
T ss_dssp HHTTC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC-----HHHHHHHHHHTTCHHHHHHHHHHHHHTT------CHHH
T ss_pred HHHhh-CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC-----hhhhHHHHHHcCCHHHHHHHHHHHHHcC------chHH
Confidence 87666 3457889999999999999999999988765 3333333444555554444443333332 1233
Q ss_pred HHHHHhccCChhHHHHHHHH
Q 038429 226 VLSACAKKRDLEFGIWVSSH 245 (258)
Q Consensus 226 li~~~~~~g~~~~a~~~~~~ 245 (258)
...+|.+.|++++|.+++.+
T Consensus 742 A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 742 AFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHH
Confidence 33334444555555444443
No 191
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.99 E-value=0.0049 Score=39.89 Aligned_cols=62 Identities=13% Similarity=0.043 Sum_probs=48.1
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHH
Q 038429 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGK--K-DVVSWNSMISGFVEGGFFEKAIELYREMEV 213 (258)
Q Consensus 152 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 213 (258)
.+...+..+-..|.+.|++++|.+.|+...+ | +...|..+-.+|...|++++|...|++..+
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3556777888888888888888888887643 3 566788888888888888888888877654
No 192
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=96.93 E-value=0.0037 Score=44.25 Aligned_cols=95 Identities=4% Similarity=-0.155 Sum_probs=69.0
Q ss_pred hhhHHHHHHHHhcCCChhhHHHHHHHhHhc------CC----------CCCCcchHHHHHHHhcCcCCcchhhhhhhcc-
Q 038429 88 LYTWNTLIRAYSSSDEPIQSFMIFLQLVYN------SP----------YFPNEFTLPFVIKAAARPVQFRVGQAIHGMF- 150 (258)
Q Consensus 88 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~----------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~- 150 (258)
...+......+.+.|++++|+..|...... .. -+.+...|..+..++.+.|+++.|...++..
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345666777777888888888877776322 00 0112346777788888888888888887777
Q ss_pred ---cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 038429 151 ---EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182 (258)
Q Consensus 151 ---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 182 (258)
+.+...|..+-.+|...|++++|...|+...+
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 55677888899999999999999999987654
No 193
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.89 E-value=0.0026 Score=41.25 Aligned_cols=63 Identities=10% Similarity=-0.010 Sum_probs=35.0
Q ss_pred ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHH
Q 038429 184 DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIE 247 (258)
Q Consensus 184 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 247 (258)
+...+..+-..|...|++++|+..|++..+.. +-+...|..+..+|...|++++|.+.+++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34455555556666666666666666655532 1123455556666666666666666665544
No 194
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.82 E-value=0.0075 Score=37.60 Aligned_cols=76 Identities=17% Similarity=0.187 Sum_probs=52.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHH
Q 038429 154 LVISNSLIHFYAVCGDLAMAYCVFVMIGK--K-DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKP-DEVTMVVVLSA 229 (258)
Q Consensus 154 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~t~~~li~~ 229 (258)
...+..+-..+.+.|++++|.+.|+...+ | +...+..+-..+...|++++|...+++..+.. | +...+..+-..
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCHHHHHHHHHH
Confidence 44666777778888888888888876543 3 55677777788888888888888888776642 3 33445444444
Q ss_pred Hh
Q 038429 230 CA 231 (258)
Q Consensus 230 ~~ 231 (258)
+.
T Consensus 87 ~~ 88 (91)
T 1na3_A 87 KQ 88 (91)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 195
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.80 E-value=0.0015 Score=42.74 Aligned_cols=92 Identities=10% Similarity=-0.112 Sum_probs=59.4
Q ss_pred chhhhhhhhhhhhccCCCChHHHHHHhccCCC---CChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCC-------
Q 038429 54 DPYSASKLFTPCALSTFSSLEYARKMFDQIPQ---PNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPN------- 123 (258)
Q Consensus 54 ~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~------- 123 (258)
+...+..+-..+.+.| ++++|...|++..+ .+...|..+..++.+.|++++|+..|++. .+. .|+
T Consensus 3 ~~~~~~~~g~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a-l~~--~p~~~~~~~~ 77 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQG--LYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQG-LRY--TSTAEHVAIR 77 (111)
T ss_dssp HHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HTS--CSSTTSHHHH
T ss_pred hHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH-HHh--CCCccHHHHH
Confidence 3455666667777777 88888887776532 45677777888888888888888888777 322 233
Q ss_pred cchHHHHHHHhcCcCCcchhhhhhhcc
Q 038429 124 EFTLPFVIKAAARPVQFRVGQAIHGMF 150 (258)
Q Consensus 124 ~~~~~~ll~~~~~~~~~~~a~~~~~~~ 150 (258)
...+..+..++...|+.+.+...++.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 78 SKLQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 334445555555566666665555544
No 196
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.77 E-value=0.0014 Score=54.90 Aligned_cols=60 Identities=5% Similarity=-0.117 Sum_probs=27.5
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHHc---CCC---CC-hhhHHHHHHHHhccCChhHHHHHHHHH
Q 038429 187 SWNSMISGFVEGGFFEKAIELYREMEVE---NVK---PD-EVTMVVVLSACAKKRDLEFGIWVSSHI 246 (258)
Q Consensus 187 ~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~---p~-~~t~~~li~~~~~~g~~~~a~~~~~~m 246 (258)
+++.|...|...|++++|+.++++..+- -+. |+ ..+++.|-..|...|++++|..++++.
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 4445555555555555555555444321 011 22 123555555555555555555555543
No 197
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.76 E-value=0.0045 Score=40.97 Aligned_cols=62 Identities=15% Similarity=0.083 Sum_probs=40.6
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHH
Q 038429 152 DDLVISNSLIHFYAVCGDLAMAYCVFVMIGK--K-DVVSWNSMISGFVEGGFFEKAIELYREMEV 213 (258)
Q Consensus 152 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 213 (258)
.+...+..+...|.+.|++++|.+.|+...+ | +...|..+-..|...|++++|...|++..+
T Consensus 17 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 17 DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455666666777777777777777765542 3 455666666777777777777777766654
No 198
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.75 E-value=0.0046 Score=42.83 Aligned_cols=64 Identities=9% Similarity=-0.046 Sum_probs=33.3
Q ss_pred ChhhHHHHHHHHHc----CCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhc----cCChhHHHHHHHHHHHcC
Q 038429 184 DVVSWNSMISGFVE----GGFFEKAIELYREMEVENVKPDEVTMVVVLSACAK----KRDLEFGIWVSSHIEKNG 250 (258)
Q Consensus 184 ~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~----~g~~~~a~~~~~~m~~~g 250 (258)
+...+..|-..|.. .++.++|.++|++..+.| +...+..|-..|.. .++.++|.+.+++..+.|
T Consensus 56 ~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 56 SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 33444444444443 455555555555555543 34444455555554 556666666666655555
No 199
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.74 E-value=0.017 Score=39.84 Aligned_cols=109 Identities=8% Similarity=-0.080 Sum_probs=80.2
Q ss_pred CChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc--cCchhHHHHHHHHHHh----cCCHHHHHH
Q 038429 102 DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF--EDDLVISNSLIHFYAV----CGDLAMAYC 175 (258)
Q Consensus 102 g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~--~~~~~~~~~li~~~~~----~g~~~~a~~ 175 (258)
+++++|+..|++. -+.| +.... |-..|...+.++.|...++.. .-+...+..|-..|.. .++.++|.+
T Consensus 9 ~d~~~A~~~~~~a-a~~g---~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 9 KDLKKAIQYYVKA-CELN---EMFGC--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHH-HHTT---CTTHH--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHH-HcCC---CHhhh--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 3567777777777 5555 22233 555666666677777777776 5667778888888887 789999999
Q ss_pred HHHhcCC-CChhhHHHHHHHHHc----CCChHHHHHHHHHHHHcCC
Q 038429 176 VFVMIGK-KDVVSWNSMISGFVE----GGFFEKAIELYREMEVENV 216 (258)
Q Consensus 176 ~~~~m~~-~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~ 216 (258)
.|+...+ -+...+..|-..|.. .++.++|..+|++..+.|.
T Consensus 83 ~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 83 YYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 9987654 467777888788877 7899999999999888764
No 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.73 E-value=0.0055 Score=40.53 Aligned_cols=76 Identities=8% Similarity=-0.119 Sum_probs=61.0
Q ss_pred HHHHHHHhcCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHH
Q 038429 172 MAYCVFVMIGK--K-DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEK 248 (258)
Q Consensus 172 ~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 248 (258)
+|.+.|+...+ | +...|..+-..|...|++++|+..|++..+.. +.+...|..+...+...|++++|...+++..+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555554432 3 67788899999999999999999999988753 23466788999999999999999999998764
No 201
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.67 E-value=0.0071 Score=54.33 Aligned_cols=129 Identities=10% Similarity=0.014 Sum_probs=69.6
Q ss_pred hhhhhhhhccCCCChHHHHHHhccCCCCChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcC
Q 038429 59 SKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPV 138 (258)
Q Consensus 59 ~~li~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~ 138 (258)
..++..+.+.| ..+.|.++.+.- ..-.....+.|++++|+++.+.+ .+...|..+...+.+.+
T Consensus 633 ~~~~~~l~~~~--~~~~a~~~~~~~--------~~~f~~~l~~~~~~~A~~~~~~~-------~~~~~W~~la~~al~~~ 695 (814)
T 3mkq_A 633 TKIARFLEGQE--YYEEALNISPDQ--------DQKFELALKVGQLTLARDLLTDE-------SAEMKWRALGDASLQRF 695 (814)
T ss_dssp HHHHHHHHHTT--CHHHHHHHCCCH--------HHHHHHHHHHTCHHHHHHHHTTC-------CCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCC--ChHHheecCCCc--------chheehhhhcCCHHHHHHHHHhh-------CcHhHHHHHHHHHHHcC
Confidence 66666677777 777777665321 11123345567777777765544 34556777777777777
Q ss_pred Ccchhhhhhhcc------------cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHcCCChHHHHH
Q 038429 139 QFRVGQAIHGMF------------EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIE 206 (258)
Q Consensus 139 ~~~~a~~~~~~~------------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~ 206 (258)
+++.|+++|..+ .-+......+.+.....|+++.|..+|.... -+...++.|.+.+++++|..
T Consensus 696 ~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~g-----~~~~a~~~~~~~~~~~~A~~ 770 (814)
T 3mkq_A 696 NFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWIAG-----DIQGAKDLLIKSQRFSEAAF 770 (814)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHT-----CHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHcC-----CHHHHHHHHHHcCChHHHHH
Confidence 777777766665 1111222233344444444444444443321 23334444555556666655
Q ss_pred HHH
Q 038429 207 LYR 209 (258)
Q Consensus 207 ~~~ 209 (258)
+-+
T Consensus 771 lA~ 773 (814)
T 3mkq_A 771 LGS 773 (814)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 202
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.66 E-value=0.0053 Score=51.34 Aligned_cols=87 Identities=9% Similarity=-0.039 Sum_probs=69.3
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC-------C----ChhhHHHHHHHHHcCCChHHHHHHHHHHHHc---CCC---CC-hhh
Q 038429 161 IHFYAVCGDLAMAYCVFVMIGK-------K----DVVSWNSMISGFVEGGFFEKAIELYREMEVE---NVK---PD-EVT 222 (258)
Q Consensus 161 i~~~~~~g~~~~a~~~~~~m~~-------~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~---p~-~~t 222 (258)
+..+.+.|++++|+.++++..+ | ...+++.|...|...|++++|+.++++..+- -+. |+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 5566678999999999976532 2 3358999999999999999999999987542 122 33 356
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHH
Q 038429 223 MVVVLSACAKKRDLEFGIWVSSHIE 247 (258)
Q Consensus 223 ~~~li~~~~~~g~~~~a~~~~~~m~ 247 (258)
++.|-..|...|++++|..++++..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 8999999999999999999999764
No 203
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=96.61 E-value=0.0088 Score=42.51 Aligned_cols=105 Identities=12% Similarity=-0.057 Sum_probs=73.3
Q ss_pred hhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcccCchhHHHHHHHHHHhcC
Q 038429 89 YTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCG 168 (258)
Q Consensus 89 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~li~~~~~~g 168 (258)
..+...-..+.+.|++++|+..|+....-..-.|+. ++ +..-+.+...|+.+-.++.+.|
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~-----------------~a---~~~~~~~a~a~~n~g~al~~Lg 71 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPE-----------------EA---FDHAGFDAFCHAGLAEALAGLR 71 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTT-----------------SC---CCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcch-----------------hh---hhhccchHHHHHHHHHHHHHCC
Confidence 345667777888899999999998873322112221 00 0000123448888899999999
Q ss_pred CHHHHHHHHHhcC---------CC-ChhhH----HHHHHHHHcCCChHHHHHHHHHHHH
Q 038429 169 DLAMAYCVFVMIG---------KK-DVVSW----NSMISGFVEGGFFEKAIELYREMEV 213 (258)
Q Consensus 169 ~~~~a~~~~~~m~---------~~-~~~~~----~~li~~~~~~g~~~~a~~~~~~m~~ 213 (258)
++++|+..++... .| +...| ...-.++...|++++|+..|++..+
T Consensus 72 r~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 72 SFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 9998888887553 44 44577 8888899999999999999998765
No 204
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.56 E-value=0.071 Score=36.60 Aligned_cols=83 Identities=19% Similarity=0.045 Sum_probs=61.9
Q ss_pred CCHHHHHHHHHhcCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHH
Q 038429 168 GDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIE 247 (258)
Q Consensus 168 g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 247 (258)
|++......+-.+. .+...++..+..+...|+-+.-.++..++.. +.+|+....-.+-.+|.+.|+..+|.+++.+.-
T Consensus 75 ~NlKrVi~C~~~~n-~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC 152 (172)
T 1wy6_A 75 QNLKSVVECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEAC 152 (172)
T ss_dssp SCTHHHHHHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hcHHHHHHHHHHhc-chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 34444444443332 2445577788888999999999999888644 456788888899999999999999999999999
Q ss_pred HcCCc
Q 038429 248 KNGIK 252 (258)
Q Consensus 248 ~~g~~ 252 (258)
+.|++
T Consensus 153 ~kG~k 157 (172)
T 1wy6_A 153 KKGEK 157 (172)
T ss_dssp HTTCH
T ss_pred HhhhH
Confidence 98864
No 205
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=96.52 E-value=0.13 Score=41.55 Aligned_cols=177 Identities=8% Similarity=-0.045 Sum_probs=121.6
Q ss_pred chhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC---CChhhHHHHHHHHhcCCChh------
Q 038429 35 NQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ---PNLYTWNTLIRAYSSSDEPI------ 105 (258)
Q Consensus 35 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~------ 105 (258)
.++++..+++.+.... +.+..+|+.--.++.+....+.+++..+++.+.+ .|..+|+.-...+.+.|.++
T Consensus 104 ~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~ 182 (349)
T 3q7a_A 104 SLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQ 182 (349)
T ss_dssp CHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred hHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhh
Confidence 5889999999999877 4467777766555555410156788888887765 57777877666666655555
Q ss_pred --hHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCC-------cchhhhhhhcc----cCchhHHHHHHHHHHhcCCH--
Q 038429 106 --QSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQ-------FRVGQAIHGMF----EDDLVISNSLIHFYAVCGDL-- 170 (258)
Q Consensus 106 --~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~-------~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~-- 170 (258)
++++.++++ .+.+ +-|..+|+-.-..+.+.++ ++++...+... +-|...|+.+-..+.+.|+.
T Consensus 183 ~~eELe~~~k~-I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~ 260 (349)
T 3q7a_A 183 WGSELDWCNEM-LRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLV 260 (349)
T ss_dssp HHHHHHHHHHH-HHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHH-HHhC-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcc
Confidence 899999988 4432 3467788877777777765 34555555444 77888998887777776653
Q ss_pred ------------------HHHHHHHHhcCC---------CChhhHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 038429 171 ------------------AMAYCVFVMIGK---------KDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214 (258)
Q Consensus 171 ------------------~~a~~~~~~m~~---------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 214 (258)
.+..+....+.. +....+..|...|...|+.++|.++++.+.+.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 261 PILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp GGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 333344433332 35567888999999999999999999998654
No 206
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.50 E-value=0.0023 Score=53.53 Aligned_cols=83 Identities=13% Similarity=-0.030 Sum_probs=63.4
Q ss_pred HHHhcCcCCcchhhhhhhcc------------cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC----------C-Chhh
Q 038429 131 IKAAARPVQFRVGQAIHGMF------------EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK----------K-DVVS 187 (258)
Q Consensus 131 l~~~~~~~~~~~a~~~~~~~------------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----------~-~~~~ 187 (258)
+..+.+.|++++|+.+++.. +....+++.|...|...|++++|+.++++..+ | ...+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 33445566777777766554 22345889999999999999999999887642 2 3357
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHH
Q 038429 188 WNSMISGFVEGGFFEKAIELYREMEV 213 (258)
Q Consensus 188 ~~~li~~~~~~g~~~~a~~~~~~m~~ 213 (258)
++.|-..|...|++++|+.++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 99999999999999999999987654
No 207
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.47 E-value=0.0043 Score=51.87 Aligned_cols=80 Identities=9% Similarity=-0.168 Sum_probs=65.5
Q ss_pred cCcCCcchhhhhhhcc-----------cCc-hhHHHHHHHHHHhcCCHHHHHHHHHhcCC----------C-ChhhHHHH
Q 038429 135 ARPVQFRVGQAIHGMF-----------EDD-LVISNSLIHFYAVCGDLAMAYCVFVMIGK----------K-DVVSWNSM 191 (258)
Q Consensus 135 ~~~~~~~~a~~~~~~~-----------~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~----------~-~~~~~~~l 191 (258)
...|++++|+.+++.. .|+ ..+++.|..+|...|++++|+.++++..+ | ...+|+.|
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 388 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL 388 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 3457788888887766 333 36899999999999999999999987652 2 33589999
Q ss_pred HHHHHcCCChHHHHHHHHHHHHc
Q 038429 192 ISGFVEGGFFEKAIELYREMEVE 214 (258)
Q Consensus 192 i~~~~~~g~~~~a~~~~~~m~~~ 214 (258)
-..|...|++++|+.++++..+-
T Consensus 389 a~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 389 GRLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHHH
Confidence 99999999999999999987763
No 208
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=96.42 E-value=0.037 Score=47.11 Aligned_cols=119 Identities=17% Similarity=0.057 Sum_probs=69.6
Q ss_pred hHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHH--HHHHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHH
Q 038429 90 TWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLP--FVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHF 163 (258)
Q Consensus 90 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~ 163 (258)
.|-..+....+.+.++.|..+|+.. +..+ .+...|. +.+... ..++.+.|..+|+.. +.+...|...++.
T Consensus 288 lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~--~~~~v~i~~A~lE~~-~~~d~~~ar~ife~al~~~~~~~~~~~~yid~ 363 (493)
T 2uy1_A 288 LRINHLNYVLKKRGLELFRKLFIEL-GNEG--VGPHVFIYCAFIEYY-ATGSRATPYNIFSSGLLKHPDSTLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHH-TTSC--CCHHHHHHHHHHHHH-HHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh-hCCC--CChHHHHHHHHHHHH-HCCChHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 3555555555566677777777766 3221 1222232 111111 122577777777766 2233445566666
Q ss_pred HHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHH
Q 038429 164 YAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEV 213 (258)
Q Consensus 164 ~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 213 (258)
..+.|+.+.|..+|+...+ ....|...+.-=...|+.+.+..+++++..
T Consensus 364 e~~~~~~~~aR~l~er~~k-~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 364 LLRIGDEENARALFKRLEK-TSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHTCHHHHHHHHHHSCC-BHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6777777888888877642 455666666666666777777777766653
No 209
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.42 E-value=0.0076 Score=37.56 Aligned_cols=25 Identities=16% Similarity=0.309 Sum_probs=11.3
Q ss_pred hHHHHHHHHhcCCChhhHHHHHHHh
Q 038429 90 TWNTLIRAYSSSDEPIQSFMIFLQL 114 (258)
Q Consensus 90 ~~~~li~~~~~~g~~~~a~~~~~~m 114 (258)
.|..+...+.+.|++++|+..|++.
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a 35 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKA 35 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHH
Confidence 3444444444444444444444444
No 210
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=96.05 E-value=0.027 Score=47.94 Aligned_cols=198 Identities=9% Similarity=-0.046 Sum_probs=105.6
Q ss_pred hhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC-CChhhHHHHHHHHhcCCChhhHHHHHHHh
Q 038429 36 QKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ-PNLYTWNTLIRAYSSSDEPIQSFMIFLQL 114 (258)
Q Consensus 36 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m 114 (258)
.+++..+|+.++... +.+...|-..+..+.+.| +.+.|..++++... |...... -.|+...+.++. ++.+
T Consensus 195 ~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~--~~~~ar~i~erAi~~P~~~~l~---~~y~~~~e~~~~---~~~l 265 (493)
T 2uy1_A 195 ESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIG--QKEKAKKVVERGIEMSDGMFLS---LYYGLVMDEEAV---YGDL 265 (493)
T ss_dssp HHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCCSSHHH---HHHHHHTTCTHH---HHHH
T ss_pred HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCcHHHH---HHHHhhcchhHH---HHHH
Confidence 345666777776654 444666666666667777 88888877764422 3222111 122221111222 2222
Q ss_pred HhcC--------CCCC---CcchHHHHHHHhcCcCCcchhhhhhhcc-cC--chhHHHHHHHHHHh-cCCHHHHHHHHHh
Q 038429 115 VYNS--------PYFP---NEFTLPFVIKAAARPVQFRVGQAIHGMF-ED--DLVISNSLIHFYAV-CGDLAMAYCVFVM 179 (258)
Q Consensus 115 ~~~~--------~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~--~~~~~~~li~~~~~-~g~~~~a~~~~~~ 179 (258)
.... +..+ ....|...+....+.++++.|..+|+.. .| +...|......-.+ .++.+.|.++|+.
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~ 345 (493)
T 2uy1_A 266 KRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEYYATGSRATPYNIFSS 345 (493)
T ss_dssp HHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred HHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 1111 0001 1133455555555566677777777766 11 22233221111112 2357778887775
Q ss_pred cCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHH
Q 038429 180 IGK--K-DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIE 247 (258)
Q Consensus 180 m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 247 (258)
..+ | +...|...+.-....|+.+.|..+|++.. -....|...+.--...|+.+.+..++++..
T Consensus 346 al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 346 GLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 533 2 23345556666666777788888887752 235566677766666788888888777765
No 211
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=95.87 E-value=0.094 Score=42.06 Aligned_cols=175 Identities=6% Similarity=-0.049 Sum_probs=118.4
Q ss_pred hhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC---CChhhHHHHHHHHhcCCC-hhhHHHHH
Q 038429 36 QKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ---PNLYTWNTLIRAYSSSDE-PIQSFMIF 111 (258)
Q Consensus 36 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~-~~~a~~~~ 111 (258)
++++..+++.+.... +.+..+|+.--.++.+.+..+++++..+++.+.+ .|..+|+.--..+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 677888888888776 4577888877666766662248899998887754 788899988888888888 58999999
Q ss_pred HHhHhcCCCCCCcchHHHHHHHhcCc--------------CCcchhhhhhhcc----cCchhHHHHHHHHHHhc------
Q 038429 112 LQLVYNSPYFPNEFTLPFVIKAAARP--------------VQFRVGQAIHGMF----EDDLVISNSLIHFYAVC------ 167 (258)
Q Consensus 112 ~~m~~~~~~~p~~~~~~~ll~~~~~~--------------~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~------ 167 (258)
+.+ .+.+ +-|..+|+-....+.+. +.++++...+... +-|...|+-+--.+.+.
T Consensus 169 ~~~-I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSL-ITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHH-HHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHH-HHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence 998 4433 34556666444443332 3345555555555 77888888766666655
Q ss_pred -----CCHHHHHHHHHhcCC--CChhhHHHHH-----HHHHcCCChHHHHHHHHHHHHc
Q 038429 168 -----GDLAMAYCVFVMIGK--KDVVSWNSMI-----SGFVEGGFFEKAIELYREMEVE 214 (258)
Q Consensus 168 -----g~~~~a~~~~~~m~~--~~~~~~~~li-----~~~~~~g~~~~a~~~~~~m~~~ 214 (258)
+.++++++.++++.+ ||. .|+.+- .+....|..+++...+.++.+.
T Consensus 247 ~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 457788888887754 654 444222 2222456677788888887763
No 212
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=95.83 E-value=0.049 Score=47.23 Aligned_cols=130 Identities=10% Similarity=-0.021 Sum_probs=77.5
Q ss_pred hhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcC--Ccchhhhhhhcc----cCchhHHHHHHHHHHhcC-CHHHHHHH
Q 038429 104 PIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPV--QFRVGQAIHGMF----EDDLVISNSLIHFYAVCG-DLAMAYCV 176 (258)
Q Consensus 104 ~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g-~~~~a~~~ 176 (258)
+++++..++.+.+.. +-+..+|+----++.+.+ +++++...++.+ +.+-+.|+.---.+.+.| ..+++.+.
T Consensus 89 ~~~eL~~~~~~l~~~--pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~ 166 (567)
T 1dce_A 89 VKAELGFLESCLRVN--PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAF 166 (567)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHH
Confidence 566666666662211 223344544444444555 446666666666 556667777766777777 77788888
Q ss_pred HHhcCCC---ChhhHHHHHHHHHcC--------------CChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHhccCChh
Q 038429 177 FVMIGKK---DVVSWNSMISGFVEG--------------GFFEKAIELYREMEVENVKP-DEVTMVVVLSACAKKRDLE 237 (258)
Q Consensus 177 ~~~m~~~---~~~~~~~li~~~~~~--------------g~~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~g~~~ 237 (258)
++.+.+. |...|+..-..+.+. +.++++++.+++.... .| |...|..+-..+.+.++.+
T Consensus 167 ~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~--~P~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 167 TDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp HHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH--CSSCSHHHHHHHHHHSCCCCCS
T ss_pred HHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh--CCCCccHHHHHHHHHhcCCCcc
Confidence 7777653 556677655555442 4467777777776653 34 4456666666666666543
No 213
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=95.82 E-value=0.15 Score=44.18 Aligned_cols=42 Identities=7% Similarity=0.083 Sum_probs=18.6
Q ss_pred hHHHHHHhccCCC---CChhhHHHHHHHHhcCC--ChhhHHHHHHHh
Q 038429 73 LEYARKMFDQIPQ---PNLYTWNTLIRAYSSSD--EPIQSFMIFLQL 114 (258)
Q Consensus 73 ~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g--~~~~a~~~~~~m 114 (258)
++++...++.+.+ .+..+|+.--..+.+.| ++++++..++.+
T Consensus 89 ~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~ 135 (567)
T 1dce_A 89 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARF 135 (567)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHH
Confidence 4444444443322 33444444444444444 334555555444
No 214
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=95.75 E-value=0.0061 Score=43.27 Aligned_cols=73 Identities=12% Similarity=0.063 Sum_probs=45.0
Q ss_pred HHHHHHHHHhcCC--C-ChhhHHHHHHHHHcC-----------CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCC
Q 038429 170 LAMAYCVFVMIGK--K-DVVSWNSMISGFVEG-----------GFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRD 235 (258)
Q Consensus 170 ~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~-----------g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~ 235 (258)
+++|+..|++..+ | +...|..+-.+|... |++++|+..|++..+ +.|+...|...+...
T Consensus 62 ~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~~----- 134 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMT----- 134 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHH-----
Confidence 3466666665543 3 445666666666654 478888888888776 467777776655543
Q ss_pred hhHHHHHHHHHHHcC
Q 038429 236 LEFGIWVSSHIEKNG 250 (258)
Q Consensus 236 ~~~a~~~~~~m~~~g 250 (258)
++|-+++-++...+
T Consensus 135 -~ka~el~~~~~~~~ 148 (158)
T 1zu2_A 135 -AKAPQLHAEAYKQG 148 (158)
T ss_dssp -HTHHHHHHHHHHSS
T ss_pred -HhCHhccCcccccc
Confidence 44555555554443
No 215
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.41 E-value=0.27 Score=39.97 Aligned_cols=134 Identities=9% Similarity=-0.042 Sum_probs=71.2
Q ss_pred CChhhHHHHHHHHhcC--C---ChhhHHHHHHHhHhcCCCCCC-cchHHHHHHHhcCc---CCc--------chhhhhhh
Q 038429 86 PNLYTWNTLIRAYSSS--D---EPIQSFMIFLQLVYNSPYFPN-EFTLPFVIKAAARP---VQF--------RVGQAIHG 148 (258)
Q Consensus 86 ~~~~~~~~li~~~~~~--g---~~~~a~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~---~~~--------~~a~~~~~ 148 (258)
.+..+|...+++.... + +..+|..+|++.+.. .|+ ...|..+.-++... +.+ ..+..-..
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l---DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS---SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 5667777777665432 2 346788888877332 243 23343333232200 000 01111111
Q ss_pred cc---cCchhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhH
Q 038429 149 MF---EDDLVISNSLIHFYAVCGDLAMAYCVFVMIG--KKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTM 223 (258)
Q Consensus 149 ~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~ 223 (258)
.+ +.+..+|..+...+...|++++|...+++.. +|+...|..+-..+.-.|++++|.+.|++.... .|...||
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~ 346 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTL 346 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChH
Confidence 11 5555666666666666677777777776554 255555555556666677777777777665553 4655555
Q ss_pred H
Q 038429 224 V 224 (258)
Q Consensus 224 ~ 224 (258)
.
T Consensus 347 ~ 347 (372)
T 3ly7_A 347 Y 347 (372)
T ss_dssp H
T ss_pred H
Confidence 4
No 216
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=95.21 E-value=0.027 Score=39.95 Aligned_cols=106 Identities=11% Similarity=-0.132 Sum_probs=61.0
Q ss_pred CChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCc----------chhhhhhhcc----cCchhHHHHHHHHHHhc
Q 038429 102 DEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQF----------RVGQAIHGMF----EDDLVISNSLIHFYAVC 167 (258)
Q Consensus 102 g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~----------~~a~~~~~~~----~~~~~~~~~li~~~~~~ 167 (258)
+++++|...++..+... +-+...|..+-.++...+++ ++|...|+.. +.+...|+.+-.+|...
T Consensus 16 ~~feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 34455555555542211 22344455455555554443 3565555555 44555777777777766
Q ss_pred -----------CCHHHHHHHHHhcC--CCChhhHHHHHHHHHcCCChHHHHHHHHHHHHcC
Q 038429 168 -----------GDLAMAYCVFVMIG--KKDVVSWNSMISGFVEGGFFEKAIELYREMEVEN 215 (258)
Q Consensus 168 -----------g~~~~a~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 215 (258)
|++++|.+.|++.. +|+...|...+.. .++|-+++-+....+
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~------~~ka~el~~~~~~~~ 148 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEM------TAKAPQLHAEAYKQG 148 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH------HHTHHHHHHHHHHSS
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHH------HHhCHhccCcccccc
Confidence 48999999998775 4776666665554 344555555555443
No 217
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=94.89 E-value=0.52 Score=38.27 Aligned_cols=129 Identities=7% Similarity=-0.126 Sum_probs=87.6
Q ss_pred CCCCcchHHHHHHHhcCc-----CCcchhhhhhhcc---cCc-hhHHHHHHHHHHh---cC-----CH---HHHHHHHHh
Q 038429 120 YFPNEFTLPFVIKAAARP-----VQFRVGQAIHGMF---EDD-LVISNSLIHFYAV---CG-----DL---AMAYCVFVM 179 (258)
Q Consensus 120 ~~p~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~---~~~-~~~~~~li~~~~~---~g-----~~---~~a~~~~~~ 179 (258)
.+.+..+|...+.+.... .+..+|..+|+.. .|+ ...|..+.-+|.- .+ .. ..+.+....
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 466788899888775432 2356788888888 443 3455544444431 11 11 112221111
Q ss_pred cC--CCChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHcC
Q 038429 180 IG--KKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNG 250 (258)
Q Consensus 180 m~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g 250 (258)
+. ..+..+|..+-..+...|++++|...+++....+ |+...|..+-..+.-.|++++|.+.+++....+
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 11 2367788877776777799999999999999876 888888888888899999999999999887653
No 218
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=94.72 E-value=0.11 Score=32.79 Aligned_cols=55 Identities=16% Similarity=0.093 Sum_probs=44.1
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC--C-Chh-hHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 038429 160 LIHFYAVCGDLAMAYCVFVMIGK--K-DVV-SWNSMISGFVEGGFFEKAIELYREMEVE 214 (258)
Q Consensus 160 li~~~~~~g~~~~a~~~~~~m~~--~-~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~ 214 (258)
....+.+.|++++|.+.|+...+ | +.. .|..+-..|...|++++|...|++..+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 45567788999999999987653 4 556 7888888888999999999999888775
No 219
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.70 E-value=0.59 Score=33.63 Aligned_cols=130 Identities=12% Similarity=0.035 Sum_probs=82.7
Q ss_pred HHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcccCchhHHHHHHHHHHhcCCHHHHH
Q 038429 95 IRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAY 174 (258)
Q Consensus 95 i~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 174 (258)
.....+.|+++.|.++.+.+ -+...|..|-......|+++-|+++|..... +..+.--|.-.|+.++-.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l-------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL-------NDSITWERLIQEALAQGNASLAEMIYQTQHS----FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----HHHHHHHHHHHTCHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHh-------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----HHHHHHHHHHhCCHHHHH
Confidence 44556778899998888777 3566788888888888888888887777632 344444555567766665
Q ss_pred HHHHhcCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHH
Q 038429 175 CVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246 (258)
Q Consensus 175 ~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m 246 (258)
++-+..... .-+|.....+.-.|+++++.++|.+. |-.|.... .....|..+.|.++.+++
T Consensus 81 kla~iA~~~--g~~n~af~~~l~lGdv~~~i~lL~~~---~r~~eA~~------~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 81 KMQNIAQTR--EDFGSMLLNTFYNNSTKERSSIFAEG---GSLPLAYA------VAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHT--TCHHHHHHHHHHHTCHHHHHHHHHHT---TCHHHHHH------HHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHC--ccHHHHHHHHHHcCCHHHHHHHHHHC---CChHHHHH------HHHHcCcHHHHHHHHHHh
Confidence 554432211 12455555566678999999888543 22222211 112256778888887765
No 220
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=94.50 E-value=0.13 Score=32.35 Aligned_cols=58 Identities=16% Similarity=0.133 Sum_probs=47.9
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHcCCCC-Chh-hHHHHHHHHhccCChhHHHHHHHHHHHcC
Q 038429 191 MISGFVEGGFFEKAIELYREMEVENVKP-DEV-TMVVVLSACAKKRDLEFGIWVSSHIEKNG 250 (258)
Q Consensus 191 li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~-t~~~li~~~~~~g~~~~a~~~~~~m~~~g 250 (258)
....+...|++++|...|++..+.. | +.. .+..+-.++...|++++|.+.|++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE--PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC--SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3456678899999999999988753 4 456 78888899999999999999999987653
No 221
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=93.54 E-value=0.46 Score=30.10 Aligned_cols=62 Identities=5% Similarity=-0.104 Sum_probs=37.8
Q ss_pred chhHHHHHHHHHHhcCC---HHHHHHHHHhcCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 038429 153 DLVISNSLIHFYAVCGD---LAMAYCVFVMIGK--K-DVVSWNSMISGFVEGGFFEKAIELYREMEVE 214 (258)
Q Consensus 153 ~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 214 (258)
+...+..+-.++...++ .++|..+|++..+ | ++.....+-..+...|++++|+..|+++.+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 44455555555544333 5677777765543 3 4455556666677777777777777777664
No 222
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=93.51 E-value=1.6 Score=31.90 Aligned_cols=171 Identities=8% Similarity=-0.015 Sum_probs=105.3
Q ss_pred CcchhhhhhhhhhhhccCCCChHHHHHHhccCCCCChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHH
Q 038429 52 FFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVI 131 (258)
Q Consensus 52 ~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll 131 (258)
.++..+-...+..+++.+ ..+....+.+.+..++...-...+.++.+.|..+ +...+..+.. .++..+-...+
T Consensus 30 ~~~~~vR~~A~~~L~~~~--~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~----~~~~~vr~~a~ 102 (211)
T 3ltm_A 30 DDSYYVRRAAAYALGKIG--DERAVEPLIKALKDEDAWVRRAAADALGQIGDER-AVEPLIKALK----DEDGWVRQSAA 102 (211)
T ss_dssp CSSHHHHHHHHHHHHHHC--CGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT----CSSHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhC--CccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc----CCCHHHHHHHH
Confidence 456777777777888877 6555566666666677777777777887777643 3444433312 24555666667
Q ss_pred HHhcCcCCcchhhhhhhcc-cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHcCCChHHHHHHHHH
Q 038429 132 KAAARPVQFRVGQAIHGMF-EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210 (258)
Q Consensus 132 ~~~~~~~~~~~a~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 210 (258)
.++++.++.+....+.+.+ .++..+-...+.++++.|..+....+...+..++..+-...+.++.+.+. .++...+..
T Consensus 103 ~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~ 181 (211)
T 3ltm_A 103 VALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEK 181 (211)
T ss_dssp HHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHH
Confidence 7777777655555555555 67777777778888887775544455555556676666666677766665 344555555
Q ss_pred HHHcCCCCChhhHHHHHHHHhcc
Q 038429 211 MEVENVKPDEVTMVVVLSACAKK 233 (258)
Q Consensus 211 m~~~~~~p~~~t~~~li~~~~~~ 233 (258)
+... ++...-...+.++.+.
T Consensus 182 ~l~d---~~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 182 LAET---GTGFARKVAVNYLETH 201 (211)
T ss_dssp HHHH---CCHHHHHHHHHHHHC-
T ss_pred HHhC---CCHHHHHHHHHHHHhc
Confidence 5443 3444555555555443
No 223
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.35 E-value=1.3 Score=30.47 Aligned_cols=132 Identities=11% Similarity=-0.017 Sum_probs=90.0
Q ss_pred ChHHHHHHhccCCC-CChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc
Q 038429 72 SLEYARKMFDQIPQ-PNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF 150 (258)
Q Consensus 72 ~~~~a~~~~~~m~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 150 (258)
.+++..++..+..+ .+..-||-+|--....-+-+-..++++.. |---|. ...|++..+...+-.+
T Consensus 22 ~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~I----GkiFDi----------s~C~NlKrVi~C~~~~ 87 (172)
T 1wy6_A 22 YIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKI----GSYFDL----------DKCQNLKSVVECGVIN 87 (172)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHH----GGGSCG----------GGCSCTHHHHHHHHHT
T ss_pred hHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHH----hhhcCc----------HhhhcHHHHHHHHHHh
Confidence 55665666555433 34445666666555555555555555544 111121 2344455555555555
Q ss_pred cCchhHHHHHHHHHHhcCCHHHHHHHHHhc-C--CCChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCC
Q 038429 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMI-G--KKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVK 217 (258)
Q Consensus 151 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m-~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 217 (258)
..+....+..++.+...|+-|+-.+++..+ . +|+....-.+-.+|.+.|+..+|.+++.+.-+.|++
T Consensus 88 n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 88 NTLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred cchHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 566777888899999999999999999985 3 356778888889999999999999999999888874
No 224
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=92.90 E-value=0.69 Score=29.73 Aligned_cols=66 Identities=12% Similarity=0.031 Sum_probs=46.4
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC----------CChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCh
Q 038429 153 DLVISNSLIHFYAVCGDLAMAYCVFVMIGK----------KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDE 220 (258)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 220 (258)
+..-+..|-..+.+.|+++.|..-|+...+ +....+..|..++.+.|++++|..++++..+ +.|+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~ 79 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEH 79 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCC
Confidence 445566777788888888888877765432 1334677777888888888888888888776 35654
No 225
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=92.78 E-value=0.98 Score=32.48 Aligned_cols=127 Identities=10% Similarity=-0.005 Sum_probs=87.7
Q ss_pred hhccCCCChHHHHHHhccCCCCChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhh
Q 038429 65 CALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQ 144 (258)
Q Consensus 65 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 144 (258)
....| +++.|.++.+.+ .+...|..|-....+.|+++-|.+.|... + -|..+.-.|.-.|+.+.-.
T Consensus 15 AL~lg--~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~-~---------D~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 15 ALEYG--NLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQ-H---------SFDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHTT--CHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHT-T---------CHHHHHHHHHHHTCHHHHH
T ss_pred HHhcC--CHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHh-C---------CHHHHHHHHHHhCCHHHHH
Confidence 34567 999999998776 57788999999999999999999999887 3 3555555555566665444
Q ss_pred hhhhcccCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHcCCChHHHHHHHHHH
Q 038429 145 AIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREM 211 (258)
Q Consensus 145 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 211 (258)
.+-+.. -...-+|.....+...|+++++.++|.+..+.+.. .-.....|.-+.|.++.+++
T Consensus 81 kla~iA-~~~g~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA-----~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 81 KMQNIA-QTREDFGSMLLNTFYNNSTKERSSIFAEGGSLPLA-----YAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHH-HHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHH-----HHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHH-HHCccHHHHHHHHHHcCCHHHHHHHHHHCCChHHH-----HHHHHHcCcHHHHHHHHHHh
Confidence 332222 11224666777788899999999999876652211 11122356677788887665
No 226
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.60 E-value=0.62 Score=38.21 Aligned_cols=54 Identities=9% Similarity=-0.020 Sum_probs=24.4
Q ss_pred HHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHH
Q 038429 192 ISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246 (258)
Q Consensus 192 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m 246 (258)
+..+...|+.++|...++.+... -+.+...|..++.++.+.|+..+|.+.|+..
T Consensus 178 ~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 178 AEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33444444444444444444332 1224444455555555555555555444443
No 227
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=92.44 E-value=0.42 Score=30.28 Aligned_cols=66 Identities=11% Similarity=-0.068 Sum_probs=47.7
Q ss_pred CcchhhhhhhhhhhhccCC-CChHHHHHHhccCCC---CChhhHHHHHHHHhcCCChhhHHHHHHHhHhcC
Q 038429 52 FFDPYSASKLFTPCALSTF-SSLEYARKMFDQIPQ---PNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNS 118 (258)
Q Consensus 52 ~~~~~~~~~li~~~~~~~~-~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 118 (258)
+.++..+..+..++...+. ...++|..+|++..+ .++.+...+-..+.+.|++++|+..|+.+ .+.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~-l~~ 72 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLL-LDS 72 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-Hhh
Confidence 3456666666666654441 136888888887643 56778888889999999999999999998 443
No 228
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=92.02 E-value=0.028 Score=47.30 Aligned_cols=142 Identities=11% Similarity=0.034 Sum_probs=103.5
Q ss_pred chhhhhhhhhhhhccCCCChHHHHHHhccCCCCChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHH
Q 038429 54 DPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKA 133 (258)
Q Consensus 54 ~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~ 133 (258)
.+.+|..|-.+..+.+ .+.+|..-|-+. .|+..|..+|.+..+.|.+++-+..+.-. ++.. -++..=+.|+-+
T Consensus 53 ~p~VWs~LgkAqL~~~--~v~eAIdsyIkA--~Dps~y~eVi~~A~~~~~~edLv~yL~Ma-Rk~~--ke~~IDteLi~a 125 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKG--MVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMA-RKKA--RESYVETELIFA 125 (624)
T ss_dssp CCCCSSSHHHHTTTSS--SCTTTTTSSCCC--SCCCSSSHHHHHTTTSSCCTTHHHHHHTT-STTC--CSTTTTHHHHHH
T ss_pred CccHHHHHHHHHHccC--chHHHHHHHHhC--CChHHHHHHHHHHHhCCCHHHHHHHHHHH-HHHh--cccccHHHHHHH
Confidence 4567888888888877 777776655333 67777889999999999999988887655 5443 334455789999
Q ss_pred hcCcCCcchhhhhhhcccCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC------------------------CChhhHH
Q 038429 134 AARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK------------------------KDVVSWN 189 (258)
Q Consensus 134 ~~~~~~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~------------------------~~~~~~~ 189 (258)
|++.++..+-+.++.. |+..-...+-+-|...|.++.|.-+|..+.+ .++.||.
T Consensus 126 yAk~~rL~elEefl~~--~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWK 203 (624)
T 3lvg_A 126 LAKTNRLAELEEFING--PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWK 203 (624)
T ss_dssp HHTSCSSSTTTSTTSC--CSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHH
T ss_pred HHhhCcHHHHHHHHcC--CCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHH
Confidence 9999988776665543 5555566677777888888888877776641 3778888
Q ss_pred HHHHHHHcCCChHHH
Q 038429 190 SMISGFVEGGFFEKA 204 (258)
Q Consensus 190 ~li~~~~~~g~~~~a 204 (258)
.+-.+|...+.+.-|
T Consensus 204 eV~~ACvd~~EfrLA 218 (624)
T 3lvg_A 204 EVCFACVDGKEFRLA 218 (624)
T ss_dssp HHTHHHHHSCTTTTT
T ss_pred HHHHHHhCchHHHHH
Confidence 888888877665544
No 229
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=90.87 E-value=3.5 Score=29.96 Aligned_cols=167 Identities=10% Similarity=-0.038 Sum_probs=111.2
Q ss_pred ChHHHHHHhccCCCCChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc-
Q 038429 72 SLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF- 150 (258)
Q Consensus 72 ~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~- 150 (258)
+-+....+.+.+..++...-...+..+.+.|..+..-.+.+.+ . .++...-...+.++++.++.+....+.+.+
T Consensus 17 ~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l-~----~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~ 91 (211)
T 3ltm_A 17 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKAL-K----DEDAWVRRAAADALGQIGDERAVEPLIKALK 91 (211)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHT-T----CSCHHHHHHHHHHHHHHCCGGGHHHHHHHTT
T ss_pred CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCccHHHHHHHHH-c----CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHc
Confidence 4444455555566677777777888888887744333343333 3 246666666777777777665555555556
Q ss_pred cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 038429 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230 (258)
Q Consensus 151 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~ 230 (258)
.++..+-...+.++++.|+.+....+...+..++...-...+.++...|..+ +...+..+.. .+|...-...+.++
T Consensus 92 ~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL 167 (211)
T 3ltm_A 92 DEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADAL 167 (211)
T ss_dssp CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHH
Confidence 7788888888999999998766666667777788877777888888877654 4444444443 36777777888888
Q ss_pred hccCChhHHHHHHHHHHH
Q 038429 231 AKKRDLEFGIWVSSHIEK 248 (258)
Q Consensus 231 ~~~g~~~~a~~~~~~m~~ 248 (258)
.+.+.. .+...+..+.+
T Consensus 168 ~~~~~~-~~~~~L~~~l~ 184 (211)
T 3ltm_A 168 GEIGGE-RVRAAMEKLAE 184 (211)
T ss_dssp HHHCSH-HHHHHHHHHHH
T ss_pred HHhCch-hHHHHHHHHHh
Confidence 887763 45555555544
No 230
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.31 E-value=0.92 Score=37.16 Aligned_cols=71 Identities=11% Similarity=0.203 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHH-----cCCCCChhhHHHH
Q 038429 156 ISNSLIHFYAVCGDLAMAYCVFVMIGK--K-DVVSWNSMISGFVEGGFFEKAIELYREMEV-----ENVKPDEVTMVVV 226 (258)
Q Consensus 156 ~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~t~~~l 226 (258)
....++..+...|+.+++...+..... | +...|..+|.++.+.|+..+|++.|++..+ .|+.|+..+-...
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 345577888899999999988877653 4 677999999999999999999999988644 4999988764433
No 231
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=90.24 E-value=1.7 Score=34.11 Aligned_cols=62 Identities=15% Similarity=0.051 Sum_probs=29.0
Q ss_pred hHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCCC--ChhhHHHHHHHHhcc-CChhHHHHHHHHHHHcC
Q 038429 187 SWNSMISGFVE-----GGFFEKAIELYREMEVENVKP--DEVTMVVVLSACAKK-RDLEFGIWVSSHIEKNG 250 (258)
Q Consensus 187 ~~~~li~~~~~-----~g~~~~a~~~~~~m~~~~~~p--~~~t~~~li~~~~~~-g~~~~a~~~~~~m~~~g 250 (258)
.|..|...|.. -|+.++|.+.|++..+. .| +..++...-+.+++. |+.++|.+.+++.....
T Consensus 201 A~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--nP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~ 270 (301)
T 3u64_A 201 VWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--CSAHDPDHHITYADALCIPLNNRAGFDEALDRALAID 270 (301)
T ss_dssp HHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--CCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC
Confidence 44444444444 25555555555554442 23 134444444444442 55555555555554443
No 232
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=90.12 E-value=4 Score=29.38 Aligned_cols=169 Identities=8% Similarity=-0.019 Sum_probs=93.1
Q ss_pred CcchhhhhhhhhhhhccCCCChHHHHHHhccCCCCChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHH
Q 038429 52 FFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVI 131 (258)
Q Consensus 52 ~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll 131 (258)
.++..+-...+.++++.+ .-+....+.+.+..++...-...+.++++.|..+. ...+..+.. .++...-...+
T Consensus 25 ~~~~~vr~~A~~~L~~~~--~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~-~~~L~~~l~----d~~~~vr~~a~ 97 (201)
T 3ltj_A 25 DDSYYVRRAAAYALGKIG--DERAVEPLIKALKDEDAWVRRAAADALGQIGDERA-VEPLIKALK----DEDGWVRQSAA 97 (201)
T ss_dssp CSCHHHHHHHHHHHHHHC--CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGG-HHHHHHHTT----CSSHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcC--ChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHH-HHHHHHHHc----CCCHHHHHHHH
Confidence 456666666666677666 55555555555556666666666677776666433 333333312 24555555666
Q ss_pred HHhcCcCCcchhhhhhhcc-cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHcCCChHHHHHHHHH
Q 038429 132 KAAARPVQFRVGQAIHGMF-EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYRE 210 (258)
Q Consensus 132 ~~~~~~~~~~~a~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 210 (258)
.++++.++.+....+.+.+ .++..+-...+.++++.|+.+....+...+..++..+=...+.++...|. .++...+..
T Consensus 98 ~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~~~~~~L~~ 176 (201)
T 3ltj_A 98 VALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEK 176 (201)
T ss_dssp HHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHH
Confidence 6666666655444444444 56666666667777777665444444445555665555556666666554 334444444
Q ss_pred HHHcCCCCChhhHHHHHHHHh
Q 038429 211 MEVENVKPDEVTMVVVLSACA 231 (258)
Q Consensus 211 m~~~~~~p~~~t~~~li~~~~ 231 (258)
+... ++...-...+.++.
T Consensus 177 ~l~d---~~~~vr~~A~~aL~ 194 (201)
T 3ltj_A 177 LAET---GTGFARKVAVNYLE 194 (201)
T ss_dssp HHHH---CCHHHHHHHHHHHH
T ss_pred HHhC---CCHHHHHHHHHHHH
Confidence 4432 34444444444443
No 233
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=89.97 E-value=1.1 Score=28.81 Aligned_cols=60 Identities=5% Similarity=-0.076 Sum_probs=35.1
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHcC------CCCChhhHHHHHHHHhccCChhHHHHHHHHHHH
Q 038429 189 NSMISGFVEGGFFEKAIELYREMEVEN------VKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEK 248 (258)
Q Consensus 189 ~~li~~~~~~g~~~~a~~~~~~m~~~~------~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 248 (258)
-.|-..+...|++..|...|+...+.- -.+....+..+..++.+.|+++.|..++++..+
T Consensus 9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 344555566666777766666554421 112344566666666677777777776666654
No 234
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=89.52 E-value=1.2 Score=31.10 Aligned_cols=62 Identities=11% Similarity=-0.041 Sum_probs=29.3
Q ss_pred CchhHHHHHHHHHHhcC---CHHHHHHHHHhcCCCC-----hhhHHHHHHHHHcCCChHHHHHHHHHHHH
Q 038429 152 DDLVISNSLIHFYAVCG---DLAMAYCVFVMIGKKD-----VVSWNSMISGFVEGGFFEKAIELYREMEV 213 (258)
Q Consensus 152 ~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 213 (258)
++..+.-.+--++++++ +++++..+|+...+.+ ...+-.|--+|.+.|++++|.++++...+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 44444445555555555 3445555554443211 12222333344555555555555555554
No 235
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=89.10 E-value=2.2 Score=27.53 Aligned_cols=31 Identities=6% Similarity=0.045 Sum_probs=16.7
Q ss_pred CChhhHHHHHHHHHcCCChHHHHHHHHHHHH
Q 038429 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEV 213 (258)
Q Consensus 183 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 213 (258)
|++....+.+++|.+-+++.-|.++|+-.+.
T Consensus 43 P~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 43 PEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4555555555555555555555555554443
No 236
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=88.37 E-value=2.7 Score=27.05 Aligned_cols=81 Identities=14% Similarity=0.097 Sum_probs=58.5
Q ss_pred Ccchhhhhhhcc--cCchhHHHHH--HHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 038429 139 QFRVGQAIHGMF--EDDLVISNSL--IHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214 (258)
Q Consensus 139 ~~~~a~~~~~~~--~~~~~~~~~l--i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 214 (258)
..++|..|-+.+ .++ .-.-.+ +..+...|++++|..+.+...-||...|-+|-. .+.|..+++..-+.++...
T Consensus 22 ~HqEA~tIAdwL~~~~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~s 98 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE-EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARS 98 (116)
T ss_dssp CHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 466777777777 444 333333 566778999999999999999999999988865 4667777787777777766
Q ss_pred CCCCChhhH
Q 038429 215 NVKPDEVTM 223 (258)
Q Consensus 215 ~~~p~~~t~ 223 (258)
| .|....|
T Consensus 99 g-~p~~q~F 106 (116)
T 2p58_C 99 Q-DPRIQTF 106 (116)
T ss_dssp C-CHHHHHH
T ss_pred C-CHHHHHH
Confidence 5 2444444
No 237
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=88.17 E-value=5.2 Score=30.76 Aligned_cols=18 Identities=0% Similarity=0.047 Sum_probs=8.6
Q ss_pred hhhhccCCCChHHHHHHhcc
Q 038429 63 TPCALSTFSSLEYARKMFDQ 82 (258)
Q Consensus 63 ~~~~~~~~~~~~~a~~~~~~ 82 (258)
...+..| +.+-+..+++.
T Consensus 36 ~~A~~~g--~~~~v~~Ll~~ 53 (285)
T 3kea_A 36 YYAIADN--NVRLVCTLLNA 53 (285)
T ss_dssp HHHHHTT--CHHHHHHHHHT
T ss_pred HHHHHcC--CHHHHHHHHhC
Confidence 3334444 55555555544
No 238
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=87.68 E-value=2.6 Score=27.09 Aligned_cols=81 Identities=11% Similarity=-0.034 Sum_probs=59.1
Q ss_pred Ccchhhhhhhcc--cCchhHHHHH--HHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 038429 139 QFRVGQAIHGMF--EDDLVISNSL--IHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214 (258)
Q Consensus 139 ~~~~a~~~~~~~--~~~~~~~~~l--i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 214 (258)
..++|..|-+.+ .++ .-.-.+ +..+...|++++|..+.+...-||...|-+|-. .+.|..+++..-+.++...
T Consensus 21 ~HqEA~tIAdwL~~~~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~s 97 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ-DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGS 97 (115)
T ss_dssp CHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 466777777777 444 333333 566778999999999999999999999988865 5778888888888787776
Q ss_pred CCCCChhhH
Q 038429 215 NVKPDEVTM 223 (258)
Q Consensus 215 ~~~p~~~t~ 223 (258)
|- |....|
T Consensus 98 g~-p~~q~F 105 (115)
T 2uwj_G 98 SD-PALADF 105 (115)
T ss_dssp SS-HHHHHH
T ss_pred CC-HHHHHH
Confidence 52 444444
No 239
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=87.53 E-value=1.6 Score=30.49 Aligned_cols=61 Identities=10% Similarity=-0.167 Sum_probs=40.3
Q ss_pred CCcchHHHHHHHhcCcC---Ccchhhhhhhcc---c-C--chhHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 038429 122 PNEFTLPFVIKAAARPV---QFRVGQAIHGMF---E-D--DLVISNSLIHFYAVCGDLAMAYCVFVMIGK 182 (258)
Q Consensus 122 p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~---~-~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 182 (258)
++..+.-.+--++++++ +.+++..+++.. . | ....+..|--+|.+.|++++|.+.++...+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 45555555555556655 455666666666 2 3 234556677788999999999999988754
No 240
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=87.37 E-value=1.6 Score=34.17 Aligned_cols=83 Identities=14% Similarity=0.076 Sum_probs=63.6
Q ss_pred hhhhhhhcc---cCc---hhHHHHHHHHHHhc-----CCHHHHHHHHHhcCC--C--ChhhHHHHHHHHHcC-CChHHHH
Q 038429 142 VGQAIHGMF---EDD---LVISNSLIHFYAVC-----GDLAMAYCVFVMIGK--K--DVVSWNSMISGFVEG-GFFEKAI 205 (258)
Q Consensus 142 ~a~~~~~~~---~~~---~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~--~--~~~~~~~li~~~~~~-g~~~~a~ 205 (258)
.|..+++.. .|+ ...|..+...|.+. |+.++|.+.|++..+ | +..++...-..+++. |+.+++.
T Consensus 181 ~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~ 260 (301)
T 3u64_A 181 AAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFD 260 (301)
T ss_dssp HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHH
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHH
Confidence 444445544 444 56899999999994 999999999998754 6 377888888888885 9999999
Q ss_pred HHHHHHHHcCCC--CChhhHH
Q 038429 206 ELYREMEVENVK--PDEVTMV 224 (258)
Q Consensus 206 ~~~~~m~~~~~~--p~~~t~~ 224 (258)
+.+++....... |+....+
T Consensus 261 ~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 261 EALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp HHHHHHHHCCGGGCSSCHHHH
T ss_pred HHHHHHHcCCCCCCCChhHHH
Confidence 999999987655 6644433
No 241
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=85.65 E-value=12 Score=35.24 Aligned_cols=121 Identities=9% Similarity=0.026 Sum_probs=82.6
Q ss_pred HHHHHhcCcCCcchhhhhhhcccCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-------------------------
Q 038429 129 FVIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKK------------------------- 183 (258)
Q Consensus 129 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------------------------- 183 (258)
.++..+.+.+..+.+..+....+.+....-.+-.+|...|++++|.+.|.+.-..
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~ 896 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQN 896 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHhhhHHHHHHHhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccc
Confidence 4555555666666666665555556555556677888899999999999876320
Q ss_pred -ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcC-CCC-Chh--hHHHHHHHHhccCChhHHHHHHHHHHHc
Q 038429 184 -DVVSWNSMISGFVEGGFFEKAIELYREMEVEN-VKP-DEV--TMVVVLSACAKKRDLEFGIWVSSHIEKN 249 (258)
Q Consensus 184 -~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p-~~~--t~~~li~~~~~~g~~~~a~~~~~~m~~~ 249 (258)
-..=|..++..+-+.|..+.+.++-+...+.. -.+ +.. .|..+++++...|++++|...+-.+...
T Consensus 897 ~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~ 967 (1139)
T 4fhn_B 897 LLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT 967 (1139)
T ss_dssp SSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH
Confidence 00126677788888888888887776555432 111 112 4788999999999999998888766543
No 242
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=85.31 E-value=7.6 Score=27.14 Aligned_cols=54 Identities=6% Similarity=-0.053 Sum_probs=32.9
Q ss_pred CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHcCCcc
Q 038429 199 GFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKNGIKM 253 (258)
Q Consensus 199 g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 253 (258)
++.++|.++|+.+...+-+. ...|...-.--.+.|++..|.+++......|-+|
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 56777777777776542222 4444444444556777777777777776655544
No 243
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=84.57 E-value=9.1 Score=27.41 Aligned_cols=167 Identities=10% Similarity=-0.031 Sum_probs=111.0
Q ss_pred ChHHHHHHhccCCCCChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc-
Q 038429 72 SLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF- 150 (258)
Q Consensus 72 ~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~- 150 (258)
....-..+++.+..++...-...+.++.+.|..+....+.+.+ . .++...-...+.++++.++.+....+.+.+
T Consensus 12 ~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l-~----~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~ 86 (201)
T 3ltj_A 12 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKAL-K----DEDAWVRRAAADALGQIGDERAVEPLIKALK 86 (201)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHT-T----CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTT
T ss_pred CCcchHHHHHHhcCCCHHHHHHHHHHHHhcCChhHHHHHHHHH-c----CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHc
Confidence 3444455666666777777777888888877644444444433 2 345555566677777777666555566655
Q ss_pred cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 038429 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230 (258)
Q Consensus 151 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~ 230 (258)
.++..+-...+.++++.|+.+....+...+..++..+=...+.++...+..+ +...+..+.. .++...-...+.++
T Consensus 87 d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~A~~aL 162 (201)
T 3ltj_A 87 DEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADAL 162 (201)
T ss_dssp CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCGG-GHHHHHHHTT---CSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHH
Confidence 7788888888999999998766666667777788777777788888777643 4444444443 25777777888888
Q ss_pred hccCChhHHHHHHHHHHH
Q 038429 231 AKKRDLEFGIWVSSHIEK 248 (258)
Q Consensus 231 ~~~g~~~~a~~~~~~m~~ 248 (258)
.+.|+.+ +...+..+.+
T Consensus 163 ~~~~~~~-~~~~L~~~l~ 179 (201)
T 3ltj_A 163 GEIGGER-VRAAMEKLAE 179 (201)
T ss_dssp HHHCSHH-HHHHHHHHHH
T ss_pred HHhCchh-HHHHHHHHHh
Confidence 8887644 5555555543
No 244
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=84.06 E-value=2.9 Score=26.95 Aligned_cols=10 Identities=30% Similarity=0.411 Sum_probs=3.6
Q ss_pred CCHHHHHHHH
Q 038429 168 GDLAMAYCVF 177 (258)
Q Consensus 168 g~~~~a~~~~ 177 (258)
+++..|.++|
T Consensus 59 ND~alAVR~l 68 (109)
T 1v54_E 59 NDFASAVRIL 68 (109)
T ss_dssp TCHHHHHHHH
T ss_pred hhHHHHHHHH
Confidence 3333333333
No 245
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=83.55 E-value=0.37 Score=40.77 Aligned_cols=176 Identities=13% Similarity=0.024 Sum_probs=108.4
Q ss_pred cchhhhhhhhhhhhccCCCChHHHHHHhccCCC--CChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHH
Q 038429 53 FDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ--PNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFV 130 (258)
Q Consensus 53 ~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 130 (258)
-|+..|..+|.+..+.| .+++-...+....+ .++..=+.|+-+|++.+++.+-.++ =-.||..-...+
T Consensus 81 ~Dps~y~eVi~~A~~~~--~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~rL~elEef--------l~~~N~A~iq~V 150 (624)
T 3lvg_A 81 DDPSSYMEVVQAANTSG--NWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEF--------INGPNNAHIQQV 150 (624)
T ss_dssp SCCCSSSHHHHHTTTSS--CCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSCSSSTTTST--------TSCCSSSCTHHH
T ss_pred CChHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHhcccccHHHHHHHHHhhCcHHHHHHH--------HcCCCcccHHHH
Confidence 45666888888888888 88888887776654 4455556888899998886653322 234666666677
Q ss_pred HHHhcCcCCcchhhhhhhcc-------------------------cCchhHHHHHHHHHHhcCCHHHHHHHHHhc-C---
Q 038429 131 IKAAARPVQFRVGQAIHGMF-------------------------EDDLVISNSLIHFYAVCGDLAMAYCVFVMI-G--- 181 (258)
Q Consensus 131 l~~~~~~~~~~~a~~~~~~~-------------------------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m-~--- 181 (258)
-+-|-..|.++.|+-+|..+ ..++.||--+-.+|...+.+.-|.-.--.+ .
T Consensus 151 GDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvhad 230 (624)
T 3lvg_A 151 GDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHAD 230 (624)
T ss_dssp HHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSS
T ss_pred HHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcccHH
Confidence 77777777777777776666 346677888888888777666554433211 1
Q ss_pred -----------------------------CCChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhc
Q 038429 182 -----------------------------KKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAK 232 (258)
Q Consensus 182 -----------------------------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~ 232 (258)
+.....|+-|--.|++-. .++.++.+ +.. -+....--+|++|.+
T Consensus 231 eL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY~-PeKlmEHl---klf---~sriNipKviracE~ 303 (624)
T 3lvg_A 231 ELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHL---ELF---WSRVNIPKVLRAAEQ 303 (624)
T ss_dssp CCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSSC-TTHHHHHH---TTS---SSSSCCTTTHHHHTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcC-HHHHHHHH---HHH---HHhccHHHHHHHHHH
Confidence 123345555555555542 22222222 111 112222346888888
Q ss_pred cCChhHHHHHHHH
Q 038429 233 KRDLEFGIWVSSH 245 (258)
Q Consensus 233 ~g~~~~a~~~~~~ 245 (258)
..-+.++.-++..
T Consensus 304 ahLW~ElvfLY~~ 316 (624)
T 3lvg_A 304 AHLWAELVFLYDK 316 (624)
T ss_dssp TTCHHHHHHHHHH
T ss_pred HhhHHHHHHHHhc
Confidence 8888888776664
No 246
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=82.89 E-value=6 Score=27.03 Aligned_cols=45 Identities=9% Similarity=0.107 Sum_probs=27.0
Q ss_pred CChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 038429 183 KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLS 228 (258)
Q Consensus 183 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~ 228 (258)
|++....+.+++|.+-+++.-|.++|+-.+.+ +.+....|..++.
T Consensus 86 PeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 86 PEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 56666666666666666666666666665543 3344445555544
No 247
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=82.03 E-value=8 Score=26.93 Aligned_cols=63 Identities=13% Similarity=0.210 Sum_probs=39.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHcCCC--hHHHHHHHHHHHHcCCCCC
Q 038429 157 SNSLIHFYAVCGDLAMAYCVFVMIGKK---DVVSWNSMISGFVEGGF--FEKAIELYREMEVENVKPD 219 (258)
Q Consensus 157 ~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~p~ 219 (258)
.+.++.-|...|+.++|.+.++++..| ...+...+..++-+.+. .+.+..++..+...|+-+.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 456777788888888888888888766 22334444455554322 3456667777776665443
No 248
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.65 E-value=4.9 Score=33.53 Aligned_cols=92 Identities=11% Similarity=0.030 Sum_probs=59.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC----C-C----hhhHHHHHHHHHcCCChHHHHHHHHHHHH----cCCCCCh--
Q 038429 156 ISNSLIHFYAVCGDLAMAYCVFVMIGK----K-D----VVSWNSMISGFVEGGFFEKAIELYREMEV----ENVKPDE-- 220 (258)
Q Consensus 156 ~~~~li~~~~~~g~~~~a~~~~~~m~~----~-~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~p~~-- 220 (258)
....|.+.|...|++.+|.+++..+.. . + +..|..-+..|...+++..|..++++... ....|+.
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~ 218 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKL 218 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHH
Confidence 345577777888888888888876532 1 1 23555666777788888888888877642 1222222
Q ss_pred hhHHHHHHHHhccCChhHHHHHHHHHH
Q 038429 221 VTMVVVLSACAKKRDLEFGIWVSSHIE 247 (258)
Q Consensus 221 ~t~~~li~~~~~~g~~~~a~~~~~~m~ 247 (258)
..|...+..+...+++.+|...|.+..
T Consensus 219 ~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 219 EYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 345666777777788887777776653
No 249
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=81.62 E-value=4.1 Score=36.49 Aligned_cols=50 Identities=22% Similarity=0.268 Sum_probs=36.6
Q ss_pred HHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHH
Q 038429 162 HFYAVCGDLAMAYCVFVMIGK--K-DVVSWNSMISGFVEGGFFEKAIELYREM 211 (258)
Q Consensus 162 ~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m 211 (258)
+-+...|+++-|+++-++... | +-.+|-.|...|...|+++.|+-.+..+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 334457888888888776653 5 5568888888888888888888777765
No 250
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=81.60 E-value=9.7 Score=25.60 Aligned_cols=91 Identities=11% Similarity=0.150 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHcCCC--hHHHHHHHHHHHHcCCCCChhh---HHHHH
Q 038429 156 ISNSLIHFYAVCGDLAMAYCVFVMIGKK---DVVSWNSMISGFVEGGF--FEKAIELYREMEVENVKPDEVT---MVVVL 227 (258)
Q Consensus 156 ~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~p~~~t---~~~li 227 (258)
..+.++.-|...|+.++|.+.++++..| ...+...+..++-+.+. .+.+..++..+...|+-+.... |..++
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~~Gf~~v~ 88 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIY 88 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHH
Confidence 3567888888899999999999998877 22344455556555432 4567778888887775544433 33333
Q ss_pred HHHhccC-ChhHHHHHHHHH
Q 038429 228 SACAKKR-DLEFGIWVSSHI 246 (258)
Q Consensus 228 ~~~~~~g-~~~~a~~~~~~m 246 (258)
..+-... |+-.|..++.++
T Consensus 89 ~~l~Dl~lDiP~a~~~l~~~ 108 (129)
T 2nsz_A 89 NEIPDINLDVPHSYSVLERF 108 (129)
T ss_dssp HHHHHHHHHSTTHHHHHHHH
T ss_pred hhChHhhcCccchHHHHHHH
Confidence 3332211 333455555544
No 251
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=78.73 E-value=23 Score=33.50 Aligned_cols=162 Identities=10% Similarity=0.039 Sum_probs=87.6
Q ss_pred hhhhhhhccCCCChHHHHHHhccCCCCChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCC
Q 038429 60 KLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQ 139 (258)
Q Consensus 60 ~li~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~ 139 (258)
.++..+.+.+ ..+.+.++....+ .+..+--.+..+|...|++++|...|++. ..|+..+......
T Consensus 817 ~l~~~l~~~~--~~~~~~~l~~~~~-~~~~~~yl~g~~~L~~ge~~~A~~~F~ka--a~~~~~~~~l~~~---------- 881 (1139)
T 4fhn_B 817 ELVEKLFLFK--QYNACMQLIGWLN-SDPIAVYLKALIYLKSKEAVKAVRCFKTT--SLVLYSHTSQFAV---------- 881 (1139)
T ss_dssp HHHHHHHHHS--CTTHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHTC--CCSCTTCCCSCSS----------
T ss_pred HHHHHHHHhh--hHHHHHHHhhhcc-CCcHHHHHHHHHHHhcCCHHHHHHHHHHH--hhhhcccchhhhh----------
Confidence 4555555666 6666666655554 34444456777888899999999999765 2233222111000
Q ss_pred cchhhhhhhcc---cCchhHHHHHHHHHHhcCCHHHHHHHHHhc----CCCCh----hhHHHHHHHHHcCCChHHHHHHH
Q 038429 140 FRVGQAIHGMF---EDDLVISNSLIHFYAVCGDLAMAYCVFVMI----GKKDV----VSWNSMISGFVEGGFFEKAIELY 208 (258)
Q Consensus 140 ~~~a~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m----~~~~~----~~~~~li~~~~~~g~~~~a~~~~ 208 (258)
...-..+.... ..-..-|.-++..|-+.|.++.+.++-... ...+. ..|..+.+++...|++++|...+
T Consensus 882 ~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL 961 (1139)
T 4fhn_B 882 LREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVAL 961 (1139)
T ss_dssp HHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHH
T ss_pred hcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 00000000000 111234566666777777766666554322 11111 24677778888888888887777
Q ss_pred HHHHHcCCCCChhhHHHHHHHHhccCChhH
Q 038429 209 REMEVENVKPDEVTMVVVLSACAKKRDLEF 238 (258)
Q Consensus 209 ~~m~~~~~~p~~~t~~~li~~~~~~g~~~~ 238 (258)
-.+.....+ ......||..+|..|.++.
T Consensus 962 ~~~pd~~~r--~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 962 MVLSTTPLK--KSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHSSSC--HHHHHHHHHHHHHHCCHHH
T ss_pred HhCCCHHHH--HHHHHHHHHHHHhCCChhh
Confidence 666554332 3345566666665555443
No 252
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=78.12 E-value=8.9 Score=28.87 Aligned_cols=208 Identities=9% Similarity=-0.032 Sum_probs=110.9
Q ss_pred ccccchhhHHHHHHHHHhhccCcchh---hhhhhhhhhhccCCCChHHHHHHhccCCCC---ChhhHHHHHHHHhcCCCh
Q 038429 31 HFLTNQKQLKRIHAQMLSTDFFFDPY---SASKLFTPCALSTFSSLEYARKMFDQIPQP---NLYTWNTLIRAYSSSDEP 104 (258)
Q Consensus 31 ~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~li~~~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~g~~ 104 (258)
.+.|+++.++ .+.+.|..++.. .-.+.+...+..| +.+-+..+++....+ +..-++. +...+..|+.
T Consensus 13 ~~~g~~~~v~----~Ll~~g~~~~~~~~~~g~t~L~~A~~~g--~~~~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~ 85 (285)
T 1wdy_A 13 VQNEDVDLVQ----QLLEGGANVNFQEEEGGWTPLHNAVQMS--REDIVELLLRHGADPVLRKKNGATP-FLLAAIAGSV 85 (285)
T ss_dssp HHTTCHHHHH----HHHHTTCCTTCCCTTTCCCHHHHHHHTT--CHHHHHHHHHTTCCTTCCCTTCCCH-HHHHHHHTCH
T ss_pred HHcCCHHHHH----HHHHcCCCcccccCCCCCcHHHHHHHcC--CHHHHHHHHHcCCCCcccCCCCCCH-HHHHHHcCCH
Confidence 3445555444 444555554432 1234566667778 888888888765443 2322333 3334445554
Q ss_pred hhHHHHHHHhHhcCCCCCCcchH--HHHHHHhcCcCCcchhhhhhhcc-cCch------------hHHHHHHHHHHhcCC
Q 038429 105 IQSFMIFLQLVYNSPYFPNEFTL--PFVIKAAARPVQFRVGQAIHGMF-EDDL------------VISNSLIHFYAVCGD 169 (258)
Q Consensus 105 ~~a~~~~~~m~~~~~~~p~~~~~--~~ll~~~~~~~~~~~a~~~~~~~-~~~~------------~~~~~li~~~~~~g~ 169 (258)
+ +++.+ .+.|..++.... .+.+...+..|+.+.++.+++.- .++. ..-.+.+...++.|+
T Consensus 86 ~----~v~~L-l~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~ 160 (285)
T 1wdy_A 86 K----LLKLF-LSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGH 160 (285)
T ss_dssp H----HHHHH-HHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTC
T ss_pred H----HHHHH-HHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCC
Confidence 3 34444 444555543211 12344445667776666666554 2211 112245566677888
Q ss_pred HHHHHHHHHhcC-C---CChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhh--HHHHHHHHhccCChhHHHHHH
Q 038429 170 LAMAYCVFVMIG-K---KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVT--MVVVLSACAKKRDLEFGIWVS 243 (258)
Q Consensus 170 ~~~a~~~~~~m~-~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t--~~~li~~~~~~g~~~~a~~~~ 243 (258)
.+-+..+++... . +|....+.+..+. ..++.....++++.+.+.|..++... -.+.+...++.|+.+-+
T Consensus 161 ~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~-~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v---- 235 (285)
T 1wdy_A 161 VEVLKILLDEMGADVNACDNMGRNALIHAL-LSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLV---- 235 (285)
T ss_dssp HHHHHHHHHTSCCCTTCCCTTSCCHHHHHH-HCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHH----
T ss_pred HHHHHHHHHhcCCCCCccCCCCCCHHHHHH-HccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHH----
Confidence 888888887632 2 2444445554443 45555555677777788887765532 12334444556776544
Q ss_pred HHHHH-cCCcccc
Q 038429 244 SHIEK-NGIKMDL 255 (258)
Q Consensus 244 ~~m~~-~g~~p~~ 255 (258)
+.+.+ .|..++.
T Consensus 236 ~~Ll~~~g~~~~~ 248 (285)
T 1wdy_A 236 QRLLEQEHIEIND 248 (285)
T ss_dssp HHHHHSSSCCTTC
T ss_pred HHHHhccCCCccc
Confidence 44444 5666553
No 253
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=77.54 E-value=18 Score=26.42 Aligned_cols=55 Identities=5% Similarity=-0.098 Sum_probs=39.7
Q ss_pred CChHHHHHHHHHHHHcCCCCChh-hHHHHHHHHhccCChhHHHHHHHHHHHcCCcc
Q 038429 199 GFFEKAIELYREMEVENVKPDEV-TMVVVLSACAKKRDLEFGIWVSSHIEKNGIKM 253 (258)
Q Consensus 199 g~~~~a~~~~~~m~~~~~~p~~~-t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 253 (258)
+...++..+|..|...||.-... -|...-..+...|++++|.++|+.=++.+-+|
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 44667888888888887765543 46666666777788888888888777776666
No 254
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=77.53 E-value=8.4 Score=28.13 Aligned_cols=205 Identities=9% Similarity=-0.034 Sum_probs=95.7
Q ss_pred cccccchhhHHHHHHHHHhhccCcchh--hhhhhhhhhhccCCCChHHHHHHhccCCCCChhh---HHHHHHHHhcCCCh
Q 038429 30 PHFLTNQKQLKRIHAQMLSTDFFFDPY--SASKLFTPCALSTFSSLEYARKMFDQIPQPNLYT---WNTLIRAYSSSDEP 104 (258)
Q Consensus 30 ~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~li~~~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~li~~~~~~g~~ 104 (258)
..+.|+++.++. +.+.|..++.. .-.+.+...++.| +.+-+..+++.....+... -.+.+...+..|+.
T Consensus 16 A~~~g~~~~~~~----Ll~~g~~~~~~~~~g~t~L~~A~~~~--~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~ 89 (240)
T 3eu9_A 16 ATQYGIYERCRE----LVEAGYDVRQPDKENVTLLHWAAINN--RIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHL 89 (240)
T ss_dssp HHHTTCHHHHHH----HHHTTCCTTCCCTTSCCHHHHHHHTT--CHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCH
T ss_pred HHHcCChHHHHH----HHHcCCCcCCCCCCCCCHHHHHHHhC--CHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCH
Confidence 344556555544 44455544332 2234566677778 8888888887665422111 12233444455654
Q ss_pred hhHHHHHHHhHhcCCCCCCcchH--HHHHHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 038429 105 IQSFMIFLQLVYNSPYFPNEFTL--PFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVFV 178 (258)
Q Consensus 105 ~~a~~~~~~m~~~~~~~p~~~~~--~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~ 178 (258)
+- ++.+ .+.|..++.... ...+...+..|+.+.++.+++.- ..+..-.+.+..+..+ +......+++.
T Consensus 90 ~~----v~~L-l~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~-~~~~~~~~~L~ 163 (240)
T 3eu9_A 90 SM----VVQL-MKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYR-THSVDPTRLLL 163 (240)
T ss_dssp HH----HHHH-HHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH-CCSSTTHHHHH
T ss_pred HH----HHHH-HHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHh-CChHHHHHHHH
Confidence 43 3333 334444443211 12334445556666666655543 2233333444444433 44334444443
Q ss_pred hcC-CC---ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhH--HHHHHHHhccCChhHHHHHHHHHHHcC
Q 038429 179 MIG-KK---DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTM--VVVLSACAKKRDLEFGIWVSSHIEKNG 250 (258)
Q Consensus 179 ~m~-~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~--~~li~~~~~~g~~~~a~~~~~~m~~~g 250 (258)
... .+ +...-.+.+...+..|+.+-+..+ .+.|..++.... .+.+....+.|+.+-+..+++.-.+.|
T Consensus 164 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~L----l~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~ 237 (240)
T 3eu9_A 164 TFNVSVNLGDKYHKNTALHWAVLAGNTTVISLL----LEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKG 237 (240)
T ss_dssp HTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHH----HHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC----
T ss_pred hcCCCcchhhccCCCcHHHHHHHcCCHHHHHHH----HHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhccC
Confidence 332 22 211111234444566666544434 344655543321 233455566778776666665544443
No 255
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=76.05 E-value=11 Score=33.71 Aligned_cols=120 Identities=8% Similarity=0.082 Sum_probs=72.7
Q ss_pred hhhhhhhccCCCC-hHHHHHHhccCCC--CChhh--HHHHHHHHhcCCC-hhhHHHHHHHhHhc-----CCCCCCcch--
Q 038429 60 KLFTPCALSTFSS-LEYARKMFDQIPQ--PNLYT--WNTLIRAYSSSDE-PIQSFMIFLQLVYN-----SPYFPNEFT-- 126 (258)
Q Consensus 60 ~li~~~~~~~~~~-~~~a~~~~~~m~~--~~~~~--~~~li~~~~~~g~-~~~a~~~~~~m~~~-----~~~~p~~~~-- 126 (258)
.|+..+...+ + .+.|..+|+++.+ |...+ ...+|..+.+.++ --+|.+++.+..+. ...++....
T Consensus 253 ~Ll~~~~~t~--~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~ 330 (754)
T 4gns_B 253 SLKSFIAITP--SLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA 330 (754)
T ss_dssp HHHHHHHTCG--GGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHcccc--cHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence 3444444444 5 5778889888754 32222 2233333333332 23455555444221 112222110
Q ss_pred --H---HHHH----HHhcCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 038429 127 --L---PFVI----KAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIG 181 (258)
Q Consensus 127 --~---~~ll----~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 181 (258)
. ..|+ .-|...|+++-|..+-+.. +.+-.+|..|..+|.+.|+++.|+-.++.+.
T Consensus 331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 0 1122 3356688999999988887 5556799999999999999999999999885
No 256
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=75.67 E-value=7 Score=26.68 Aligned_cols=33 Identities=15% Similarity=0.176 Sum_probs=14.1
Q ss_pred CCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc
Q 038429 118 SPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF 150 (258)
Q Consensus 118 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 150 (258)
..+.|++......+++|-+.+|+..|.++++.+
T Consensus 82 ~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~v 114 (152)
T 2y69_E 82 YDLVPEPKIIDAALRACRRLNDFASAVRILEVV 114 (152)
T ss_dssp SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 344444444444444444444444444444333
No 257
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=74.84 E-value=8.6 Score=25.82 Aligned_cols=64 Identities=8% Similarity=0.036 Sum_probs=31.4
Q ss_pred ChhhHHHHHHHHHcCCChHH---HHHHHHHHHHcCCCC-Ch-hhHHHHHHHHhccCChhHHHHHHHHHHH
Q 038429 184 DVVSWNSMISGFVEGGFFEK---AIELYREMEVENVKP-DE-VTMVVVLSACAKKRDLEFGIWVSSHIEK 248 (258)
Q Consensus 184 ~~~~~~~li~~~~~~g~~~~---a~~~~~~m~~~~~~p-~~-~t~~~li~~~~~~g~~~~a~~~~~~m~~ 248 (258)
+..+--.+--++++.++..+ ++.++++....+ .| +. ...-.|--++.+.|++++|.+.++.+.+
T Consensus 34 s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 34 SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 33333333344555554443 556666555442 12 11 2233344455666666666666666554
No 258
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=74.67 E-value=10 Score=29.06 Aligned_cols=192 Identities=9% Similarity=-0.018 Sum_probs=102.3
Q ss_pred cccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCCC---ChhhHHHHHHHHhcCCChhhHH
Q 038429 32 FLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQP---NLYTWNTLIRAYSSSDEPIQSF 108 (258)
Q Consensus 32 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~a~ 108 (258)
..|+.+.+. .+.+.|..++...-.+.+...+..| +.+-+..+++....+ +..-++.| ...+..|+.+-+.
T Consensus 40 ~~g~~~~v~----~Ll~~g~~~~~~~g~t~L~~A~~~g--~~~~v~~Ll~~ga~~~~~d~~g~t~L-~~A~~~g~~~~v~ 112 (285)
T 3kea_A 40 ADNNVRLVC----TLLNAGALKNLLENEFPLHQAATLE--DTKIVKILLFSGLDDSQFDDKGNTAL-YYAVDSGNMQTVK 112 (285)
T ss_dssp HTTCHHHHH----HHHHTTGGGSCCTTCCHHHHHTTSS--SCHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHHHH
T ss_pred HcCCHHHHH----HHHhCCCCCCCCCCCCHHHHHHHcC--CHHHHHHHHHCCCCCCCcCCCCCcHH-HHHHHcCCHHHHH
Confidence 345555444 4445565555443345666667778 888888888765442 33223333 3445567655444
Q ss_pred HHHHHhHhcCCCCCCcc---hHHHHHHHhcCcCCcchhhhhhhcc--cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-
Q 038429 109 MIFLQLVYNSPYFPNEF---TLPFVIKAAARPVQFRVGQAIHGMF--EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGK- 182 (258)
Q Consensus 109 ~~~~~m~~~~~~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~- 182 (258)
.+++. |..++.. -+.+.+...+..|+.+.++.+++.- ..+...-.+.+...++.|+.+-+.-+++.-..
T Consensus 113 ~Ll~~-----ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~ 187 (285)
T 3kea_A 113 LFVKK-----NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTST 187 (285)
T ss_dssp HHHHH-----CGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHhc-----CCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcCCCC
Confidence 33332 3333322 2234455556677777666666655 22222345566677788888877777754222
Q ss_pred --CChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHH
Q 038429 183 --KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSS 244 (258)
Q Consensus 183 --~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~ 244 (258)
.|...++..+...+..|+. ++.+.+.+.|..|+.... .-+..|+.+-+..+++
T Consensus 188 n~~~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~~~~-----~a~~~~~~~iv~~Ll~ 242 (285)
T 3kea_A 188 NTNNSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYSANL-----ENVLLDDAEIAKMIIE 242 (285)
T ss_dssp CTTCCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTTTTG-----GGGTTTCHHHHHHHHH
T ss_pred CcccCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCCCh-----hhhhcCCHHHHHHHHH
Confidence 2333333333334445554 344555667877776652 1234555554444433
No 259
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=73.71 E-value=23 Score=25.75 Aligned_cols=80 Identities=10% Similarity=0.023 Sum_probs=40.7
Q ss_pred cccccchhhHHHHHHHHHhhccCcchhh--hhhhhhhhhccCCCChHHHHHHhccCCCC---ChhhHHHHHHHHhcCCCh
Q 038429 30 PHFLTNQKQLKRIHAQMLSTDFFFDPYS--ASKLFTPCALSTFSSLEYARKMFDQIPQP---NLYTWNTLIRAYSSSDEP 104 (258)
Q Consensus 30 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~li~~~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~g~~ 104 (258)
....|+.+.+..+++...+.|..++... -.+.+...+..| +.+-+..+++....+ +..-++ .+...+..|+.
T Consensus 16 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~--~~~~v~~Ll~~g~~~~~~~~~g~t-~l~~A~~~~~~ 92 (241)
T 1k1a_A 16 AVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITT--LPSVVRLLVTAGASPMALDRHGQT-AAHLACEHRSP 92 (241)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTT--CHHHHHHHHHTTCCTTCCCTTSCC-HHHHHHHTTCH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcC--CHHHHHHHHHcCCCccccCCCCCC-HHHHHHHcCCH
Confidence 3445677777777776666655544332 223445555566 777776666654332 221122 23333455555
Q ss_pred hhHHHHHH
Q 038429 105 IQSFMIFL 112 (258)
Q Consensus 105 ~~a~~~~~ 112 (258)
+-+..+++
T Consensus 93 ~~~~~Ll~ 100 (241)
T 1k1a_A 93 TCLRALLD 100 (241)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 54444443
No 260
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=73.57 E-value=31 Score=27.16 Aligned_cols=164 Identities=8% Similarity=-0.045 Sum_probs=91.4
Q ss_pred hhhhhhhhhhhhccCCCChHHHHHHhccCCCCChhhHHHHHHHHhcCCChhhHHH----HHHHhHhcCCCCCCcchHHHH
Q 038429 55 PYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFM----IFLQLVYNSPYFPNEFTLPFV 130 (258)
Q Consensus 55 ~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~----~~~~m~~~~~~~p~~~~~~~l 130 (258)
...|.++..=|.+.+ ++++|.+++... ...+.+.|+...|-+ +++.. .+.+++++.....-+
T Consensus 33 hQ~~Rtl~~Ry~~~~--~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~-~~~~~~~~~~~~~rl 98 (312)
T 2wpv_A 33 HQTLRTIANRYVRSK--SYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVY-DLAEVKVDDISVARL 98 (312)
T ss_dssp HHHHHHHHHHHHHTT--CHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHH-HHTTCCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHhc--CHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHH-HHcCCCCCHHHHHHH
Confidence 345667777777777 888887775433 223344455544433 34444 666777777766666
Q ss_pred HHHhcCcCCcc-hhhhhhhcc-----------cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHcC
Q 038429 131 IKAAARPVQFR-VGQAIHGMF-----------EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEG 198 (258)
Q Consensus 131 l~~~~~~~~~~-~a~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~ 198 (258)
+..+..-..-+ .-..+.+.+ .-|......+-..|.+.|++.+|+..|-.-...+...+..++.-+...
T Consensus 99 ~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~ 178 (312)
T 2wpv_A 99 VRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQ 178 (312)
T ss_dssp HHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHh
Confidence 66655533211 112222222 235567788888888999999998887633322455555444433332
Q ss_pred ---CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHH
Q 038429 199 ---GFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIE 247 (258)
Q Consensus 199 ---g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 247 (258)
|...++ |...-..++ -|.-.|++..|..+++...
T Consensus 179 ~~~~~~~e~--------------dlf~~RaVL-~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 179 VDDIEDSTV--------------AEFFSRLVF-NYLFISNISFAHESKDIFL 215 (312)
T ss_dssp TTCCCHHHH--------------HHHHHHHHH-HHHHTTBHHHHHHHHHHHH
T ss_pred cCCCCcchH--------------HHHHHHHHH-HHHHhcCHHHHHHHHHHHH
Confidence 332222 222222222 3345678888888887654
No 261
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=72.09 E-value=39 Score=27.63 Aligned_cols=26 Identities=0% Similarity=-0.204 Sum_probs=16.3
Q ss_pred hhhhhhhhhhccCCCChHHHHHHhccCC
Q 038429 57 SASKLFTPCALSTFSSLEYARKMFDQIP 84 (258)
Q Consensus 57 ~~~~li~~~~~~~~~~~~~a~~~~~~m~ 84 (258)
....|...|.+.| +.++...++....
T Consensus 21 ~~~~l~~~~~~~~--~~~~~~~~~~~~~ 46 (394)
T 3txn_A 21 GILQQGELYKQEG--KAKELADLIKVTR 46 (394)
T ss_dssp HHHHHHHHHHHHT--CHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcC--CHHHHHHHHHHHH
Confidence 3455666666666 7776666666554
No 262
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=71.96 E-value=19 Score=29.99 Aligned_cols=173 Identities=9% Similarity=0.023 Sum_probs=104.3
Q ss_pred cchhhHHHHHHHHHhh-----ccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC---CChhhHHHHHHHH----hcC
Q 038429 34 TNQKQLKRIHAQMLST-----DFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ---PNLYTWNTLIRAY----SSS 101 (258)
Q Consensus 34 ~~~~~a~~~~~~m~~~-----~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~----~~~ 101 (258)
++++.|.+.+-.+.+. ....+......++..|...+ +++...+.+..+.+ ..-.+-..+++.+ ...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~--~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRN--KWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHS--CHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC
Confidence 6788887777666543 33445667888999999999 99888666554332 1112222333322 222
Q ss_pred CChhh--HHHHHHHhHhcCCCCCCc--------chHHHHHHHhcCcCCcchhhhhhhccc-----C-----chhHHHHHH
Q 038429 102 DEPIQ--SFMIFLQLVYNSPYFPNE--------FTLPFVIKAAARPVQFRVGQAIHGMFE-----D-----DLVISNSLI 161 (258)
Q Consensus 102 g~~~~--a~~~~~~m~~~~~~~p~~--------~~~~~ll~~~~~~~~~~~a~~~~~~~~-----~-----~~~~~~~li 161 (258)
...+. -+.+.+.. ..+..+- .....|...+-..|++.+|..++..++ . -...+...+
T Consensus 108 ~~~d~~~~~~~i~~l---~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~ 184 (445)
T 4b4t_P 108 KSLDLNTRISVIETI---RVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQM 184 (445)
T ss_dssp CTTHHHHHHHHHHCC---SSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHH---HHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 22222 12222211 1122111 112456777888899999998888871 1 134666778
Q ss_pred HHHHhcCCHHHHHHHHHhcCC--------CC--hhhHHHHHHHHHcCCChHHHHHHHHHH
Q 038429 162 HFYAVCGDLAMAYCVFVMIGK--------KD--VVSWNSMISGFVEGGFFEKAIELYREM 211 (258)
Q Consensus 162 ~~~~~~g~~~~a~~~~~~m~~--------~~--~~~~~~li~~~~~~g~~~~a~~~~~~m 211 (258)
+.|...+++.+|..++..... |+ ..-|...+..+...+++.+|-+.|.+.
T Consensus 185 rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 185 ELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 889999999999988877531 11 234566677777788888887766665
No 263
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=70.28 E-value=25 Score=24.72 Aligned_cols=167 Identities=7% Similarity=-0.092 Sum_probs=79.4
Q ss_pred hhccCCCChHHHHHHhccCC-C---CChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcch--HHHHHHHhcCcC
Q 038429 65 CALSTFSSLEYARKMFDQIP-Q---PNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFT--LPFVIKAAARPV 138 (258)
Q Consensus 65 ~~~~~~~~~~~a~~~~~~m~-~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~--~~~ll~~~~~~~ 138 (258)
.+..| +.+....++..-. . .+..-++.|. ..++.|+.+ +++.+ .+.|..++... -.+.+...+..|
T Consensus 12 A~~~g--~~~~v~~ll~~~~~~~~~~~~~g~t~L~-~A~~~~~~~----~v~~L-l~~g~~~~~~~~~g~t~l~~A~~~~ 83 (201)
T 3hra_A 12 AANQR--DTKKVKEILQDTTYQVDEVDTEGNTPLN-IAVHNNDIE----IAKAL-IDRGADINLQNSISDSPYLYAGAQG 83 (201)
T ss_dssp HHHTT--CHHHHHHHHTCTTCCTTCCCTTSCCHHH-HHHHHTCHH----HHHHH-HHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred HHHhc--cHHHHHHHHHcCCCCCCCCCCCCCCHHH-HHHHcCCHH----HHHHH-HHcCCCCCCCCCCCCCHHHHHHHcC
Confidence 34456 7777777776554 1 2222233333 333445533 33333 33344443221 112233334456
Q ss_pred Ccchhhhhhhcc-----cCchhHHHHHHHHHHhcCCHHHHHHHHHhc-CC---CChhhHHHHHHHHHcCCChHHHHHHHH
Q 038429 139 QFRVGQAIHGMF-----EDDLVISNSLIHFYAVCGDLAMAYCVFVMI-GK---KDVVSWNSMISGFVEGGFFEKAIELYR 209 (258)
Q Consensus 139 ~~~~a~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~---~~~~~~~~li~~~~~~g~~~~a~~~~~ 209 (258)
+.+.++.+++.. ..+..- .+.+...++.|+.+-+.-+++.- .. +|..-.+.|..+.........-.++.+
T Consensus 84 ~~~~~~~Ll~~~~~~~~~~~~~g-~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~ 162 (201)
T 3hra_A 84 RTEILAYMLKHATPDLNKHNRYG-GNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVK 162 (201)
T ss_dssp CHHHHHHHHHHSCCCTTCCCTTS-CCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHH
T ss_pred CHHHHHHHHhccCcccccccCCC-CcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHH
Confidence 666665555333 112111 12344556678887777777665 22 244445555555443333333456666
Q ss_pred HHHHcCCCCChhhH--HHHHHHHhccCChhHHH
Q 038429 210 EMEVENVKPDEVTM--VVVLSACAKKRDLEFGI 240 (258)
Q Consensus 210 ~m~~~~~~p~~~t~--~~li~~~~~~g~~~~a~ 240 (258)
.+.+.|..|+.... .+.+...++.|+.+-+.
T Consensus 163 ~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~ 195 (201)
T 3hra_A 163 LLMENGADQSIKDNSGRTAMDYANQKGYTEISK 195 (201)
T ss_dssp HHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred HHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHH
Confidence 67777766654321 12333444556655443
No 264
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=70.18 E-value=19 Score=23.15 Aligned_cols=77 Identities=14% Similarity=-0.017 Sum_probs=55.1
Q ss_pred hhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCCCChhhHHHHHHHHhcCCChhhHHHHHHHhH
Q 038429 36 QKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLV 115 (258)
Q Consensus 36 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 115 (258)
-++|..|-+++...+- ...+--+-+..+.+.| ++++|..+.+...-||...|-+|-. .+.|..+++..-+.++
T Consensus 22 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG--~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~l- 94 (115)
T 2uwj_G 22 HEEALCIAEWLERLGQ--DEAARLIRISSLANQG--RYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGL- 94 (115)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTT--CHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcch--hHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHH-
Confidence 4677778888877664 2222223334455677 9999999999999999999977755 5778878887777777
Q ss_pred hcCC
Q 038429 116 YNSP 119 (258)
Q Consensus 116 ~~~~ 119 (258)
...|
T Consensus 95 a~sg 98 (115)
T 2uwj_G 95 GGSS 98 (115)
T ss_dssp HTCS
T ss_pred HhCC
Confidence 5554
No 265
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=69.17 E-value=20 Score=23.07 Aligned_cols=77 Identities=10% Similarity=-0.012 Sum_probs=53.7
Q ss_pred hhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCCCChhhHHHHHHHHhcCCChhhHHHHHHHhH
Q 038429 36 QKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLV 115 (258)
Q Consensus 36 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 115 (258)
-++|..|-+++...+- ...+--+-+..+.+.| ++++|..+.+...-||...|-+|-. .+.|..+++..-+.++
T Consensus 23 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG--~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~l- 95 (116)
T 2p58_C 23 HEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRG--DYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRL- 95 (116)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTT--CHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcch--hHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHH-
Confidence 4677778888777664 2222223334455667 9999999999999999999987765 4567777777777677
Q ss_pred hcCC
Q 038429 116 YNSP 119 (258)
Q Consensus 116 ~~~~ 119 (258)
...|
T Consensus 96 a~sg 99 (116)
T 2p58_C 96 ARSQ 99 (116)
T ss_dssp TTCC
T ss_pred HhCC
Confidence 5444
No 266
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=68.89 E-value=15 Score=25.97 Aligned_cols=123 Identities=9% Similarity=-0.004 Sum_probs=61.5
Q ss_pred hccCcchhh--hhhhhhhhhccCCCChHHHHHHhccCCC-----CCh-------hhHHHHHHHHhcCCChhhHHHHHHHh
Q 038429 49 TDFFFDPYS--ASKLFTPCALSTFSSLEYARKMFDQIPQ-----PNL-------YTWNTLIRAYSSSDEPIQSFMIFLQL 114 (258)
Q Consensus 49 ~~~~~~~~~--~~~li~~~~~~~~~~~~~a~~~~~~m~~-----~~~-------~~~~~li~~~~~~g~~~~a~~~~~~m 114 (258)
.|+.|.... +-.-+..+...+ .++.|+.+.+.+.. +++ .++..+.+++...|++..|...|++.
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~--LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAG--LHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp ---------CCHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 355554443 334556666677 88888777665432 332 24666778888889999999999885
Q ss_pred HhcCCCCCCcc-hHHHHHHHhcCcCCcchhhhhhhcccCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 038429 115 VYNSPYFPNEF-TLPFVIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIG 181 (258)
Q Consensus 115 ~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 181 (258)
.+....-+... +.+.+- .....+. . +. ...+...---+-.+|.+.|++++|+.+++.+.
T Consensus 90 Lq~~k~l~k~~s~~~~~~---~~ss~p~---s-~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 90 LQQKKALSKTSKVRPSTG---NSASTPQ---S-QC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHCC---------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHhcCCCcccccc---ccCCCcc---c-cc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 33332222221 111110 0000000 0 00 12233444446777888888888888888764
No 267
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=68.77 E-value=31 Score=28.22 Aligned_cols=85 Identities=11% Similarity=-0.037 Sum_probs=45.4
Q ss_pred CcccccchhhHHHHHHHHHhh-cc---CcchhhhhhhhhhhhccCCCChHHHHHHhccCCC---CChhhH------HHHH
Q 038429 29 HPHFLTNQKQLKRIHAQMLST-DF---FFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ---PNLYTW------NTLI 95 (258)
Q Consensus 29 ~~~~~~~~~~a~~~~~~m~~~-~~---~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~------~~li 95 (258)
.+.+.|+.++...++...... +. ..+.-....+|+.+.... +..+.-.++..+..+ ..-.+| .-+.
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~-~~~~~~~~~~~~~~~~a~~~~r~flr~~l~~kL~ 106 (394)
T 3txn_A 28 LYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMD-AGTGIEVQLCKDCIEWAKQEKRTFLRQSLEARLI 106 (394)
T ss_dssp HHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSC-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666655555544321 11 112234566777777654 133333333333221 111223 2577
Q ss_pred HHHhcCCChhhHHHHHHHh
Q 038429 96 RAYSSSDEPIQSFMIFLQL 114 (258)
Q Consensus 96 ~~~~~~g~~~~a~~~~~~m 114 (258)
..|...|++.+|+.++.++
T Consensus 107 ~l~~~~~~y~~a~~~i~~l 125 (394)
T 3txn_A 107 ALYFDTALYTEALALGAQL 125 (394)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHH
Confidence 8888888899988888887
No 268
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=68.55 E-value=43 Score=26.69 Aligned_cols=184 Identities=7% Similarity=-0.072 Sum_probs=98.0
Q ss_pred chhhHHHHHHHHHhhc-c---CcchhhhhhhhhhhhccCCCChHHHHHHhccCCCCChhhHHHHHHHHhcCCChhhHHH-
Q 038429 35 NQKQLKRIHAQMLSTD-F---FFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFM- 109 (258)
Q Consensus 35 ~~~~a~~~~~~m~~~~-~---~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~- 109 (258)
.+++..+=++.-+..| . ---..+|.++..=|.+.+ ++++|.+++-.. ...+.+.|+...+-+
T Consensus 11 ~~~~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~~Ry~~~k--~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL 77 (336)
T 3lpz_A 11 KIERIIARLQRRIAEGQPEEQYEAAQETRLVAARYSKQG--NWAAAVDILASV-----------SQTLLRSGQGGSGGDL 77 (336)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHH-----------HHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCccccHHHHHHHHHHHHHHhhc--CHHHHHHHHHHH-----------HHHHHHCCCcchHHHH
Confidence 3444444444444455 1 112346777777788888 888888875432 223334455444333
Q ss_pred ---HHHHhHhcCCCCCCcchHHHHHHHhcCcCCcc-hhhhhhhcc-----------cCchhHHHHHHHHHHhcCCHHHHH
Q 038429 110 ---IFLQLVYNSPYFPNEFTLPFVIKAAARPVQFR-VGQAIHGMF-----------EDDLVISNSLIHFYAVCGDLAMAY 174 (258)
Q Consensus 110 ---~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~-~a~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~a~ 174 (258)
+++.. .+.++++|.....-++..+.....-+ .-..+.+.+ .-|......+-..|.+.+++.+|+
T Consensus 78 ~~llvevy-~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae 156 (336)
T 3lpz_A 78 AVLLVDTF-RQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAE 156 (336)
T ss_dssp HHHHHHHH-HHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHH-HHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 33444 56677777766666666665544311 112222222 234456667788888899999998
Q ss_pred HHHHhcCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHH
Q 038429 175 CVFVMIGKKDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIE 247 (258)
Q Consensus 175 ~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 247 (258)
.-|-.-.++....|..++..+...+...+ +|...-..++. |.-.+++..|..+++...
T Consensus 157 ~H~ilg~~~s~~~~a~mL~ew~~~~~~~e--------------~dlfiaRaVL~-yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 157 KHLVLGTKESPEVLARMEYEWYKQDESHT--------------APLYCARAVLP-YLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHHTTSCTTHHHHHHHHHHHHHHTSCGGG--------------HHHHHHHHHHH-HHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCchHHHHHHHHHHHHHhcCCcc--------------HHHHHHHHHHH-HHHhCCHHHHHHHHHHHH
Confidence 88853333333566544443333322211 12222233333 344577888877776654
No 269
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=67.99 E-value=29 Score=24.46 Aligned_cols=51 Identities=2% Similarity=0.011 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHcCCCCChh-hHHHHHHHHhccCChhHHHHHHHHHHHcCCcc
Q 038429 203 KAIELYREMEVENVKPDEV-TMVVVLSACAKKRDLEFGIWVSSHIEKNGIKM 253 (258)
Q Consensus 203 ~a~~~~~~m~~~~~~p~~~-t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 253 (258)
+...+|..|...||.-... -|...-..+-..|++.+|.++|+.=++.+-+|
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 3566777777776655443 35555555666677777777777766666555
No 270
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=66.87 E-value=29 Score=25.21 Aligned_cols=179 Identities=9% Similarity=-0.013 Sum_probs=94.9
Q ss_pred hhhhhhhccCCCChHHHHHHhccC----C---CCChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchH--HHH
Q 038429 60 KLFTPCALSTFSSLEYARKMFDQI----P---QPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL--PFV 130 (258)
Q Consensus 60 ~li~~~~~~~~~~~~~a~~~~~~m----~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~--~~l 130 (258)
+.+...++.| +.+.+..+++.+ . ..+..-++. +...+..|+.+- ++.+ .+.|..++.... .+.
T Consensus 11 t~L~~A~~~g--~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~-L~~A~~~~~~~~----v~~L-l~~g~~~~~~~~~g~t~ 82 (241)
T 1k1a_A 11 TPLHIAVVQG--NLPAVHRLVNLFQQGGRELDIYNNLRQTP-LHLAVITTLPSV----VRLL-VTAGASPMALDRHGQTA 82 (241)
T ss_dssp CHHHHHHHTT--CHHHHHHHHHHHHHTTCCSCCCCTTSCCH-HHHHHHTTCHHH----HHHH-HHTTCCTTCCCTTSCCH
T ss_pred cHHHHHHHcC--CHHHHHHHHHHHHhcCCCCCcccccCCCH-HHHHHHcCCHHH----HHHH-HHcCCCccccCCCCCCH
Confidence 3455566678 888888887622 1 234444444 444555666543 3334 344555443221 233
Q ss_pred HHHhcCcCCcchhhhhhhccc--------CchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh---hhHHHHHHHHHcCC
Q 038429 131 IKAAARPVQFRVGQAIHGMFE--------DDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV---VSWNSMISGFVEGG 199 (258)
Q Consensus 131 l~~~~~~~~~~~a~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---~~~~~li~~~~~~g 199 (258)
+...+..|+.+.+..+++... .+..- .+.+...++.|+.+-...+++.-..++. ..-.+.+...+..|
T Consensus 83 l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g-~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~ 161 (241)
T 1k1a_A 83 AHLACEHRSPTCLRALLDSAAPGTLDLEARNYDG-LTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENN 161 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTS-CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHcCCCccccccccCcCC-CcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcC
Confidence 444556777777776666541 12222 2345556677888887777776544322 11223344445667
Q ss_pred ChHHHHHHHHHHHHcCCCCChhhH--HHHHHHHhccCChhHHHHHHHHHHHcCCcccc
Q 038429 200 FFEKAIELYREMEVENVKPDEVTM--VVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255 (258)
Q Consensus 200 ~~~~a~~~~~~m~~~~~~p~~~t~--~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 255 (258)
+.+-+ +.+.+.|..++.... .+.+...++.|+.+ +++.+.+.|..|+.
T Consensus 162 ~~~~v----~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~ga~~~~ 211 (241)
T 1k1a_A 162 SLSMV----QLLLQHGANVNAQMYSGSSALHSASGRGLLP----LVRTLVRSGADSSL 211 (241)
T ss_dssp CHHHH----HHHHHTTCCTTCBCTTSCBHHHHHHHHTCHH----HHHHHHHTTCCTTC
T ss_pred CHHHH----HHHHHcCCCCCCcCCCCCCHHHHHHHcCCHH----HHHHHHhcCCCCCC
Confidence 76544 444456766654321 23334445556655 55556667877664
No 271
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=66.19 E-value=35 Score=25.40 Aligned_cols=52 Identities=8% Similarity=0.005 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHcCCCCChh-hHHHHHHHHhccCChhHHHHHHHHHHHcCCcc
Q 038429 202 EKAIELYREMEVENVKPDEV-TMVVVLSACAKKRDLEFGIWVSSHIEKNGIKM 253 (258)
Q Consensus 202 ~~a~~~~~~m~~~~~~p~~~-t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 253 (258)
+++..+|..|...||.-... -|...-..+...|++.+|.++|+.=++.+-+|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 46677788887777765443 35666666677788888888887776666555
No 272
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=65.51 E-value=11 Score=31.20 Aligned_cols=90 Identities=8% Similarity=-0.084 Sum_probs=62.4
Q ss_pred hHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCC--cchHHHHHHHhcCcCCcchhhhhhhcc------cCchhHHHHHH
Q 038429 90 TWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPN--EFTLPFVIKAAARPVQFRVGQAIHGMF------EDDLVISNSLI 161 (258)
Q Consensus 90 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~------~~~~~~~~~li 161 (258)
++..+...|.+.|+.++|.+.|.++ +.....++ ...+-..+..+...+++..+....... .++...-+.+-
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~-~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKS-LSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHH-HHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH-HHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 5678889999999999999999999 55433333 345777888888899999888887777 23332222211
Q ss_pred ----HHHHhcCCHHHHHHHHHhc
Q 038429 162 ----HFYAVCGDLAMAYCVFVMI 180 (258)
Q Consensus 162 ----~~~~~~g~~~~a~~~~~~m 180 (258)
..+...+++.+|.+.|-+.
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHH
Confidence 1123467888888877654
No 273
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=65.21 E-value=19 Score=24.16 Aligned_cols=60 Identities=8% Similarity=-0.253 Sum_probs=28.3
Q ss_pred CCcchHHHHHHHhcCcCCcch---hhhhhhcc---c-C--chhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 038429 122 PNEFTLPFVIKAAARPVQFRV---GQAIHGMF---E-D--DLVISNSLIHFYAVCGDLAMAYCVFVMIG 181 (258)
Q Consensus 122 p~~~~~~~ll~~~~~~~~~~~---a~~~~~~~---~-~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 181 (258)
|+..+--.+.-+++++.+... +..+++.+ . | .....-.|--++.+.|++++|.+.++.+.
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL 101 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLL 101 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444444444445555554433 44444444 1 1 11223334455556666666666655543
No 274
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=63.80 E-value=34 Score=23.76 Aligned_cols=52 Identities=6% Similarity=-0.028 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHcCCCCChh-hHHHHHHHHhccCChhHHHHHHHHHHHcCCcc
Q 038429 202 EKAIELYREMEVENVKPDEV-TMVVVLSACAKKRDLEFGIWVSSHIEKNGIKM 253 (258)
Q Consensus 202 ~~a~~~~~~m~~~~~~p~~~-t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 253 (258)
+++..+|..|...||.-... -|...-..+...|++++|.++++.=++.+-+|
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 44788888888887765543 46666677777888888888888877777666
No 275
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=63.79 E-value=39 Score=27.24 Aligned_cols=92 Identities=11% Similarity=0.098 Sum_probs=59.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCC---hhhHHHHHHHHHcCCC--hHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 038429 156 ISNSLIHFYAVCGDLAMAYCVFVMIGKKD---VVSWNSMISGFVEGGF--FEKAIELYREMEVENVKPDEVTMVVVLSAC 230 (258)
Q Consensus 156 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~---~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~p~~~t~~~li~~~ 230 (258)
..+.++.-|...|+.++|.+.++++..|. ..+...+..++-+.++ .+....++..+...|+-+.......+.+.+
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~vl 298 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIY 298 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 35788999999999999999999999873 2345555556655433 456778888888877655444433333333
Q ss_pred hccC----ChhHHHHHHHHHH
Q 038429 231 AKKR----DLEFGIWVSSHIE 247 (258)
Q Consensus 231 ~~~g----~~~~a~~~~~~m~ 247 (258)
.... |+-.|..++.++.
T Consensus 299 ~~ldDl~lDiP~A~~~la~~v 319 (358)
T 3eiq_C 299 NEIPDINLDVPHSYSVLERFV 319 (358)
T ss_dssp HHHHHHHHHCTTHHHHHHHHH
T ss_pred HhccHhhcccccHHHHHHHHH
Confidence 3322 3334555555543
No 276
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=63.66 E-value=43 Score=24.89 Aligned_cols=196 Identities=13% Similarity=0.033 Sum_probs=98.8
Q ss_pred HHHHHHHhhccCcchhh--hhhhhhhhhccCCCChHHHHHHhccCCCC---ChhhHHHHHHHHhcCCChhhHHHHHHHhH
Q 038429 41 RIHAQMLSTDFFFDPYS--ASKLFTPCALSTFSSLEYARKMFDQIPQP---NLYTWNTLIRAYSSSDEPIQSFMIFLQLV 115 (258)
Q Consensus 41 ~~~~~m~~~~~~~~~~~--~~~li~~~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 115 (258)
++.+.+.+.|..++... -.+.+...+..| +.+-+..+++....+ +..-++.+ ...+..|+.+-+ +.+
T Consensus 53 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~--~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~~----~~L- 124 (285)
T 1wdy_A 53 DIVELLLRHGADPVLRKKNGATPFLLAAIAG--SVKLLKLFLSKGADVNECDFYGFTAF-MEAAVYGKVKAL----KFL- 124 (285)
T ss_dssp HHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT--CHHHHHHHHHTTCCTTCBCTTCCBHH-HHHHHTTCHHHH----HHH-
T ss_pred HHHHHHHHcCCCCcccCCCCCCHHHHHHHcC--CHHHHHHHHHcCCCCCccCcccCCHH-HHHHHhCCHHHH----HHH-
Confidence 34555566676655432 234555566777 888888888765443 33333333 344556664433 333
Q ss_pred hcCCCCCCcch------------HHHHHHHhcCcCCcchhhhhhhcc-----cCchhHHHHHHHHHHhcCCH---HHHHH
Q 038429 116 YNSPYFPNEFT------------LPFVIKAAARPVQFRVGQAIHGMF-----EDDLVISNSLIHFYAVCGDL---AMAYC 175 (258)
Q Consensus 116 ~~~~~~p~~~~------------~~~ll~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~li~~~~~~g~~---~~a~~ 175 (258)
.+.|..++... -...+...+..|+.+.+..+++.. ..+..-.+.+..+ +..|+. .+..+
T Consensus 125 l~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a-~~~~~~~~~~~i~~ 203 (285)
T 1wdy_A 125 YKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHA-LLSSDDSDVEAITH 203 (285)
T ss_dssp HHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHH-HHCSCTTTHHHHHH
T ss_pred HHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHH-HHccccchHHHHHH
Confidence 34444443220 113444555677888887777653 2333334444444 444552 33333
Q ss_pred HHHhc-CCC---ChhhHHHHHHHHHcCCChHHHHHHHHHHHH-cCCCCChh---hHHHHHHHHhccCChhHHHHHHHHHH
Q 038429 176 VFVMI-GKK---DVVSWNSMISGFVEGGFFEKAIELYREMEV-ENVKPDEV---TMVVVLSACAKKRDLEFGIWVSSHIE 247 (258)
Q Consensus 176 ~~~~m-~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~p~~~---t~~~li~~~~~~g~~~~a~~~~~~m~ 247 (258)
++-+- ..+ |....+. +...+..|+.+-+..+ .+ .|..++.. -.+.+ ...++.|+. ++.+.+.
T Consensus 204 ~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~~v~~L----l~~~g~~~~~~~~~g~t~l-~~A~~~~~~----~i~~~Ll 273 (285)
T 1wdy_A 204 LLLDHGADVNVRGERGKTP-LILAVEKKHLGLVQRL----LEQEHIEINDTDSDGKTAL-LLAVELKLK----KIAELLC 273 (285)
T ss_dssp HHHHTTCCSSCCCTTSCCH-HHHHHHTTCHHHHHHH----HHSSSCCTTCCCTTSCCHH-HHHHHTTCH----HHHHHHH
T ss_pred HHHHcCCCCCCcCCCCCcH-HHHHHHcCCHHHHHHH----HhccCCCccccCCCCCcHH-HHHHHcCcH----HHHHHHH
Confidence 33322 222 3333333 3444566776544444 44 45555433 23333 333445655 4556667
Q ss_pred HcCCcccc
Q 038429 248 KNGIKMDL 255 (258)
Q Consensus 248 ~~g~~p~~ 255 (258)
+.|..|+.
T Consensus 274 ~~Ga~~~~ 281 (285)
T 1wdy_A 274 KRGASTDC 281 (285)
T ss_dssp HHSSCSCC
T ss_pred HcCCCCCc
Confidence 77877764
No 277
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=62.24 E-value=42 Score=26.33 Aligned_cols=67 Identities=13% Similarity=0.196 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCC---hhhHHHHHHHHHcCCC--hHHHHHHHHHHHHcCCCCChhh
Q 038429 156 ISNSLIHFYAVCGDLAMAYCVFVMIGKKD---VVSWNSMISGFVEGGF--FEKAIELYREMEVENVKPDEVT 222 (258)
Q Consensus 156 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~---~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~p~~~t 222 (258)
..+.++.-|...|+.++|.+.++++..|. ..+...+..++-+.++ .+.+..++..+...|+-+....
T Consensus 168 ki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~ 239 (307)
T 2zu6_B 168 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQM 239 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 35678999999999999999999999872 2344555555555433 4566788888887776554443
No 278
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=61.84 E-value=17 Score=30.01 Aligned_cols=54 Identities=6% Similarity=-0.149 Sum_probs=25.5
Q ss_pred hHHHHHHHhcCcCCcchhhhhhhcc-------cCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 038429 126 TLPFVIKAAARPVQFRVGQAIHGMF-------EDDLVISNSLIHFYAVCGDLAMAYCVFVM 179 (258)
Q Consensus 126 ~~~~ll~~~~~~~~~~~a~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 179 (258)
+...+...+.+.|+++.|..++..+ ..-...+-.+|..+...+++..+.....+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~k 193 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEA 193 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 4444555555555555555555555 11122334444444445555554444443
No 279
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=61.04 E-value=40 Score=23.84 Aligned_cols=18 Identities=11% Similarity=0.056 Sum_probs=8.1
Q ss_pred HHHHHHHHHcCCCCChhh
Q 038429 205 IELYREMEVENVKPDEVT 222 (258)
Q Consensus 205 ~~~~~~m~~~~~~p~~~t 222 (258)
.++.+.+.+.|..++...
T Consensus 94 ~~iv~~Ll~~Gadin~~d 111 (186)
T 3t8k_A 94 TELCKIFLEKGADITALY 111 (186)
T ss_dssp HHHHHHHHHTTCCSSSCB
T ss_pred HHHHHHHHHCCCCCCccC
Confidence 344444444454444433
No 280
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=60.71 E-value=45 Score=24.14 Aligned_cols=201 Identities=8% Similarity=-0.041 Sum_probs=103.0
Q ss_pred ccccchhhHHHHHHHHHhhccCcchhh--hhhhhhhhhccCCCChHHHHHHhccCCC---CChhhHHHHHHHHhcCCChh
Q 038429 31 HFLTNQKQLKRIHAQMLSTDFFFDPYS--ASKLFTPCALSTFSSLEYARKMFDQIPQ---PNLYTWNTLIRAYSSSDEPI 105 (258)
Q Consensus 31 ~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~li~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~ 105 (258)
...|+.+ +.+.+.+.|..++... -.+.+...+..| +.+-+..+++.... .+....+ .+...+..|+.+
T Consensus 19 ~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~--~~~~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~ 91 (237)
T 3b7b_A 19 AEAGHVD----ICHMLVQAGANIDTCSEDQRTPLMEAAENN--HLEAVKYLIKAGALVDPKDAEGST-CLHLAAKKGHYE 91 (237)
T ss_dssp HHHTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHTT--CHHHHHHHHTTTCCCCCCCTTSCC-HHHHHHHTTCHH
T ss_pred HHcCcHH----HHHHHHHcCCCcCccCCCCCCHHHHHHHhC--CHHHHHHHHhCCCCCCCCCCCCCc-HHHHHHHcCCHH
Confidence 3345554 4444555665554422 224555566677 88888888876543 2222222 333444556644
Q ss_pred hHHHHHHHhHhcCC-CCCCc---chHHHHHHHhcCcCCcchhhhhhhcc-cCch--hHHHHHHHHHHhcCCHHHHHHHHH
Q 038429 106 QSFMIFLQLVYNSP-YFPNE---FTLPFVIKAAARPVQFRVGQAIHGMF-EDDL--VISNSLIHFYAVCGDLAMAYCVFV 178 (258)
Q Consensus 106 ~a~~~~~~m~~~~~-~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~--~~~~~li~~~~~~g~~~~a~~~~~ 178 (258)
-+ +.+ .+.| ..++. .-.+ .+...+..|+.+.+..+++.- .++. ..-.+.+...++.|+.+-+.-+++
T Consensus 92 ~~----~~L-l~~~~~~~~~~~~~g~t-~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~ 165 (237)
T 3b7b_A 92 VV----QYL-LSNGQMDVNCQDDGGWT-PMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLA 165 (237)
T ss_dssp HH----HHH-HTTTCCCTTCCCTTSCC-HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHT
T ss_pred HH----HHH-HhCCCCCcccCCCCCCC-HHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence 33 333 2222 32222 1222 233444556666666555543 1111 112234555567788777766666
Q ss_pred hcCCC---ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhh--HHHHHHHHhccCChhHHHHHHHHHHHc
Q 038429 179 MIGKK---DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVT--MVVVLSACAKKRDLEFGIWVSSHIEKN 249 (258)
Q Consensus 179 ~m~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t--~~~li~~~~~~g~~~~a~~~~~~m~~~ 249 (258)
.-..+ |....+. +...++.|+.+-+ +.+.+.|..++... =.+.+...+..|+.+.+.++.+.+.++
T Consensus 166 ~g~~~~~~~~~g~t~-L~~A~~~~~~~~v----~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~~l~ds 236 (237)
T 3b7b_A 166 AKCDLHAVNIHGDSP-LHIAARENRYDCV----VLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQDS 236 (237)
T ss_dssp TTCCTTCCCTTCCCH-HHHHHHTTCHHHH----HHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCCCCCCH-HHHHHHhCCHhHH----HHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 54333 2222233 3344556665544 33445565554321 234455567788888888888887653
No 281
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP, structural genomics, PSI; 1.95A {Leishmania major} SCOP: a.39.1.8
Probab=60.27 E-value=35 Score=24.08 Aligned_cols=74 Identities=8% Similarity=0.011 Sum_probs=36.5
Q ss_pred hhhHHHHHHHHHhh-ccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC--CChhhHHHHHHHHhcCCChhhHHHHHH
Q 038429 36 QKQLKRIHAQMLST-DFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ--PNLYTWNTLIRAYSSSDEPIQSFMIFL 112 (258)
Q Consensus 36 ~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~a~~~~~ 112 (258)
.++..++|..+-.. .-..+..-+..++......- .-++...+|..+.. ....+|..++..+... +....+|+
T Consensus 26 ~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~--~~~~~~~l~~~~D~d~dG~I~~~EF~~~~~~~---~~~~~~F~ 100 (191)
T 1y1x_A 26 NQELMEWFRAVDTDGSGAISVPELNAALSSAGVPF--SLATTEKLLHMYDKNHSGEITFDEFKDLHHFI---LSMREGFR 100 (191)
T ss_dssp TSCHHHHHHHHCTTCSSSBCHHHHHHHHCBTTBCC--CHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCcCcHHHHHHHHHHcCCCC--CHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHH---HHHHHHHH
Confidence 35556666666332 11333333444443333333 45566666665543 3456666666665542 34444555
Q ss_pred Hh
Q 038429 113 QL 114 (258)
Q Consensus 113 ~m 114 (258)
.+
T Consensus 101 ~~ 102 (191)
T 1y1x_A 101 KR 102 (191)
T ss_dssp HH
T ss_pred Hh
Confidence 44
No 282
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=58.34 E-value=20 Score=22.61 Aligned_cols=39 Identities=13% Similarity=-0.022 Sum_probs=28.6
Q ss_pred CCHHHHHHHHHhcCCCChhhHHHHHHHHHcCCChHHHHH
Q 038429 168 GDLAMAYCVFVMIGKKDVVSWNSMISGFVEGGFFEKAIE 206 (258)
Q Consensus 168 g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~ 206 (258)
...++|.++++.+.++....|..++.++...|+.+-|..
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~l 89 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLASF 89 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHHH
Confidence 457788888888888777888888888877676655543
No 283
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=57.69 E-value=50 Score=23.75 Aligned_cols=51 Identities=10% Similarity=-0.095 Sum_probs=22.4
Q ss_pred cccccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccC
Q 038429 30 PHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQI 83 (258)
Q Consensus 30 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m 83 (258)
+...|+++....++..-...--.++.. -.+.+...+..| +.+-+..+++.-
T Consensus 13 A~~~g~~~~v~~ll~~~~~~~~~~~~~-g~t~L~~A~~~g--~~~~v~~Ll~~g 63 (231)
T 3aji_A 13 LAYSGKLDELKERILADKSLATRTDQD-SRTALHWACSAG--HTEIVEFLLQLG 63 (231)
T ss_dssp HHHHTCHHHHHHHHHHCGGGGGCCCTT-SCCHHHHHHHHT--CHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHhchhhhhcCCCC-CCCHHHHHHHcC--cHHHHHHHHHhC
Confidence 344455555555544322111111221 123334445555 666666666544
No 284
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=56.53 E-value=17 Score=22.22 Aligned_cols=38 Identities=5% Similarity=-0.063 Sum_probs=29.3
Q ss_pred ChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcc
Q 038429 103 EPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFR 141 (258)
Q Consensus 103 ~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~ 141 (258)
..++|...|.+|..+.+|.|+. ||...+...+...++.
T Consensus 15 t~eea~~~Fk~LL~e~~V~p~~-tWe~~~~~i~~DpRY~ 52 (82)
T 2dod_A 15 PLEARMKQFKDMLLERGVSAFS-TWEKELHKIVFDPRYL 52 (82)
T ss_dssp CHHHHHHHHHHHHHHTTCCSSS-CHHHHHHHHHTCSGGG
T ss_pred CHHHHHHHHHHHHHHcCcCCCC-CHHHHHHHHccCCccc
Confidence 3588999999998889988775 7888777776665543
No 285
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=55.98 E-value=33 Score=23.55 Aligned_cols=23 Identities=13% Similarity=0.070 Sum_probs=13.5
Q ss_pred HHHHHHcCCChHHHHHHHHHHHH
Q 038429 191 MISGFVEGGFFEKAIELYREMEV 213 (258)
Q Consensus 191 li~~~~~~g~~~~a~~~~~~m~~ 213 (258)
|--++.+.|++++|.++.+.+.+
T Consensus 83 LAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 83 LTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh
Confidence 33455666666666666666555
No 286
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=55.87 E-value=33 Score=27.04 Aligned_cols=200 Identities=5% Similarity=-0.092 Sum_probs=102.2
Q ss_pred ccccchhhHHHHHHHHHhhccCcchhh--hhhhhhhhhccCCCChHHHHHHhccCCCCChhhHHHHHHHHhcCCChhhHH
Q 038429 31 HFLTNQKQLKRIHAQMLSTDFFFDPYS--ASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSF 108 (258)
Q Consensus 31 ~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~li~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~ 108 (258)
...|+.+.+.. +++.|..++... -.+.+...+..| +.+-+..+++.....+...-.+.+...+..|+.+-+.
T Consensus 28 a~~g~~~~v~~----Ll~~g~~~~~~d~~g~t~L~~A~~~g--~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~ 101 (364)
T 3ljn_A 28 ARKGQTDEVRR----LIETGVSPTIQNRFGCTALHLACKFG--CVDTAKYLASVGEVHSLWHGQKPIHLAVMANKTDLVV 101 (364)
T ss_dssp HHHTCHHHHHH----HHHTTCCTTCCCTTCCCHHHHHHHHC--CHHHHHHHHHHCCCCCCBTTBCHHHHHHHTTCHHHHH
T ss_pred HHcCCHHHHHH----HHHcCCCccccCCCCCcHHHHHHHcC--CHHHHHHHHHCCCCccccCCCCHHHHHHHcCCHHHHH
Confidence 34455554444 444565554432 234555666677 8888888887665443322223444455667777666
Q ss_pred HHHHHhHhcCCCCCCc--------------------chHHHHHHHhcCcC--Ccchhhhhhhcc----cCchhHHHHHHH
Q 038429 109 MIFLQLVYNSPYFPNE--------------------FTLPFVIKAAARPV--QFRVGQAIHGMF----EDDLVISNSLIH 162 (258)
Q Consensus 109 ~~~~~m~~~~~~~p~~--------------------~~~~~ll~~~~~~~--~~~~a~~~~~~~----~~~~~~~~~li~ 162 (258)
.+++.- ...|..|+. .-.+.| ...+..| +.+.++.+++.- ..|..-+ +.+.
T Consensus 102 ~Ll~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L-~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~-t~L~ 178 (364)
T 3ljn_A 102 ALVEGA-KERGQMPESLLNECDEREVNEIGSHVKHCKGQTAL-HWCVGLGPEYLEMIKILVQLGASPTAKDKADE-TPLM 178 (364)
T ss_dssp HHHHHH-HHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHH-HHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSC-CHHH
T ss_pred HHHHhc-cccCCCHHHHHhhcchHhhhhhccccCCCCCCCHH-HHHHHcCCchHHHHHHHHHcCCCCcccCCCCC-CHHH
Confidence 666653 332333222 112233 3334445 555555555543 2222222 3445
Q ss_pred HHHhcCCHHHHHHHHHhcCC--------CChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhh---HHHHHHHHh
Q 038429 163 FYAVCGDLAMAYCVFVMIGK--------KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVT---MVVVLSACA 231 (258)
Q Consensus 163 ~~~~~g~~~~a~~~~~~m~~--------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t---~~~li~~~~ 231 (258)
..+..|+.+-+.-+++.-.. .|....+.|. ..+..|+.+-+ +.+.+.|..++... .+.|. ..+
T Consensus 179 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~-~A~~~g~~~~v----~~Ll~~gad~~~~d~~g~tpL~-~A~ 252 (364)
T 3ljn_A 179 RAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLH-WAILINWEDVA----MRFVEMGIDVNMEDNEHTVPLY-LSV 252 (364)
T ss_dssp HHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTH-HHHTTTCHHHH----HHHHTTTCCTTCCCTTSCCHHH-HHH
T ss_pred HHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHH-HHHHcCCHHHH----HHHHHcCCCCCCCCCCCCCHHH-HHH
Confidence 55677888888777775332 2333333333 33556665543 44445565554332 23333 344
Q ss_pred ccCChhHHHHHHHH
Q 038429 232 KKRDLEFGIWVSSH 245 (258)
Q Consensus 232 ~~g~~~~a~~~~~~ 245 (258)
+.|+.+-+..+++.
T Consensus 253 ~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 253 RAAMVLLTKELLQK 266 (364)
T ss_dssp HTCCHHHHHHHHHH
T ss_pred HhChHHHHHHHHHc
Confidence 55777766666654
No 287
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=53.68 E-value=54 Score=22.90 Aligned_cols=30 Identities=17% Similarity=0.204 Sum_probs=20.2
Q ss_pred CCChhhHHHHHHHHhcCCCh------hhHHHHHHHh
Q 038429 85 QPNLYTWNTLIRAYSSSDEP------IQSFMIFLQL 114 (258)
Q Consensus 85 ~~~~~~~~~li~~~~~~g~~------~~a~~~~~~m 114 (258)
..|..+|-..+...-+.|++ ++..++|++.
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerA 45 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQA 45 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHH
Confidence 35666777777777766777 6666677665
No 288
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=52.43 E-value=56 Score=22.82 Aligned_cols=149 Identities=9% Similarity=0.075 Sum_probs=79.6
Q ss_pred HHHhcCCChhhHHHHHHHhHhcCCCCCCc---chHHHHHHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhcC
Q 038429 96 RAYSSSDEPIQSFMIFLQLVYNSPYFPNE---FTLPFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCG 168 (258)
Q Consensus 96 ~~~~~~g~~~~a~~~~~~m~~~~~~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g 168 (258)
...+..|+.+.+..++.. .+..++. .-++ .+...+..|+.+.++.+++.- ..+..-+ +.+...+..|
T Consensus 10 ~~A~~~g~~~~v~~ll~~----~~~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~-t~l~~A~~~~ 83 (201)
T 3hra_A 10 LEAANQRDTKKVKEILQD----TTYQVDEVDTEGNT-PLNIAVHNNDIEIAKALIDRGADINLQNSISD-SPYLYAGAQG 83 (201)
T ss_dssp HHHHHTTCHHHHHHHHTC----TTCCTTCCCTTSCC-HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSC-CHHHHHHHTT
T ss_pred HHHHHhccHHHHHHHHHc----CCCCCCCCCCCCCC-HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCC-CHHHHHHHcC
Confidence 334566777766666533 2322222 2223 344455667777777766654 2222223 3455556778
Q ss_pred CHHHHHHHHHhcC-C---CChhhHHHHHHHHHcCCChHHHHHHHHHHHHcC-CCC---ChhhHHHHHHHHhccCChhHHH
Q 038429 169 DLAMAYCVFVMIG-K---KDVVSWNSMISGFVEGGFFEKAIELYREMEVEN-VKP---DEVTMVVVLSACAKKRDLEFGI 240 (258)
Q Consensus 169 ~~~~a~~~~~~m~-~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p---~~~t~~~li~~~~~~g~~~~a~ 240 (258)
+.+-+..+++.-. . ++....+.| ...+..|+.+-+..++ +.| ..+ |..-.+.|..++........-.
T Consensus 84 ~~~~~~~Ll~~~~~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll----~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ 158 (201)
T 3hra_A 84 RTEILAYMLKHATPDLNKHNRYGGNAL-IPAAEKGHIDNVKLLL----EDGREDIDFQNDFGYTALIEAVGLREGNQLYQ 158 (201)
T ss_dssp CHHHHHHHHHHSCCCTTCCCTTSCCSH-HHHHHTTCHHHHHHHH----HHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHH
T ss_pred CHHHHHHHHhccCcccccccCCCCcHH-HHHHHcCCHHHHHHHH----HcCCCCcCCCCCCCCCHHHHHHHhccchhhHH
Confidence 8888888885543 1 233333333 3345567766554444 333 222 3333455555554433344446
Q ss_pred HHHHHHHHcCCcccc
Q 038429 241 WVSSHIEKNGIKMDL 255 (258)
Q Consensus 241 ~~~~~m~~~g~~p~~ 255 (258)
++++.+.+.|..++.
T Consensus 159 ~~v~~Ll~~ga~~~~ 173 (201)
T 3hra_A 159 DIVKLLMENGADQSI 173 (201)
T ss_dssp HHHHHHHHTTCCTTC
T ss_pred HHHHHHHHCCCCCCc
Confidence 778888888877764
No 289
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=52.19 E-value=72 Score=23.92 Aligned_cols=120 Identities=10% Similarity=-0.052 Sum_probs=60.7
Q ss_pred CCcchHHHHHHHhcCcCCcchhhhhhhcc-cCchhHHHHHHHHHHhcC--CHHHHHHHHHhcCCCChhhHHHHHHHHHcC
Q 038429 122 PNEFTLPFVIKAAARPVQFRVGQAIHGMF-EDDLVISNSLIHFYAVCG--DLAMAYCVFVMIGKKDVVSWNSMISGFVEG 198 (258)
Q Consensus 122 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~~~~~li~~~~~~ 198 (258)
++..+-...+.+++..++.+....+...+ .++..+-...+.++++.| ..+-...+...+..++..+=...+.++...
T Consensus 140 ~~~~vR~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~ 219 (280)
T 1oyz_A 140 KSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYR 219 (280)
T ss_dssp SCHHHHHHHHHHHHTC---CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 44444455555666655543333333333 555555566666666655 333333444445556666666667777777
Q ss_pred CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHH
Q 038429 199 GFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEK 248 (258)
Q Consensus 199 g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 248 (258)
|.......+.+.+.. |+ .-...+.++.+.|+. .+...+.++.+
T Consensus 220 ~~~~~~~~L~~~l~d----~~--vr~~a~~aL~~i~~~-~~~~~L~~~l~ 262 (280)
T 1oyz_A 220 KDKRVLSVLCDELKK----NT--VYDDIIEAAGELGDK-TLLPVLDTMLY 262 (280)
T ss_dssp TCGGGHHHHHHHHTS----SS--CCHHHHHHHHHHCCG-GGHHHHHHHHT
T ss_pred CCHhhHHHHHHHhcC----cc--HHHHHHHHHHhcCch-hhhHHHHHHHh
Confidence 755444444443332 23 223446666666663 44555555543
No 290
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=52.04 E-value=55 Score=22.55 Aligned_cols=24 Identities=13% Similarity=0.138 Sum_probs=11.8
Q ss_pred hhHHHHHHHHhccCChhHHHHHHH
Q 038429 221 VTMVVVLSACAKKRDLEFGIWVSS 244 (258)
Q Consensus 221 ~t~~~li~~~~~~g~~~~a~~~~~ 244 (258)
.+|.-++..+.+...+-.....++
T Consensus 157 i~~~Ef~~~~~~~~~~~~~l~~~d 180 (183)
T 1s6c_A 157 VTLDEFLESXQEDDNIMRSLQLFQ 180 (183)
T ss_dssp ECHHHHHHHTTSCCHHHHHHHHHH
T ss_pred EeHHHHHHHHhcChHHHHHHHHhh
Confidence 445555555555444444444444
No 291
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=52.02 E-value=20 Score=24.36 Aligned_cols=44 Identities=7% Similarity=0.118 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHcCCCCC--hhhHHHHHHHHhccCChhHHHHHHHHHH
Q 038429 202 EKAIELYREMEVENVKPD--EVTMVVVLSACAKKRDLEFGIWVSSHIE 247 (258)
Q Consensus 202 ~~a~~~~~~m~~~~~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~m~ 247 (258)
.+++.++++..+.+ |. ....-.|--|+.+.|++++|.+..+.+.
T Consensus 60 ~~GI~LLe~l~~~~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL 105 (134)
T 3o48_A 60 RLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 105 (134)
T ss_dssp HHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34555555555443 31 2233344445556666666666665554
No 292
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=51.22 E-value=29 Score=26.05 Aligned_cols=88 Identities=11% Similarity=-0.002 Sum_probs=46.8
Q ss_pred HHHHHHhcCCChhhHHHHHHHhHhc-CCCCC----CcchHHHHHHHhcCcCCcchhhhhhhcc--cCchhHHHHHHHHHH
Q 038429 93 TLIRAYSSSDEPIQSFMIFLQLVYN-SPYFP----NEFTLPFVIKAAARPVQFRVGQAIHGMF--EDDLVISNSLIHFYA 165 (258)
Q Consensus 93 ~li~~~~~~g~~~~a~~~~~~m~~~-~~~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~--~~~~~~~~~li~~~~ 165 (258)
.-++.+....++++|..++++..+. .++++ +.......++.-.....-.-+..+.+.+ .++.......+..+.
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~~~~~~~~r~~v~~L~ 102 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILSSNEIVHLKSGTENMI 102 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 4566677777778887777766211 12221 1122222233322222222333333333 344555666778888
Q ss_pred hcCCHHHHHHHHHhc
Q 038429 166 VCGDLAMAYCVFVMI 180 (258)
Q Consensus 166 ~~g~~~~a~~~~~~m 180 (258)
+.|+-++|.++|-+.
T Consensus 103 rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 103 KLGLPEQALDLFLQN 117 (235)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HCCChhHHHHHHHHH
Confidence 889999999888544
No 293
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=50.73 E-value=49 Score=22.32 Aligned_cols=15 Identities=13% Similarity=0.087 Sum_probs=6.6
Q ss_pred HHhcCCHHHHHHHHH
Q 038429 164 YAVCGDLAMAYCVFV 178 (258)
Q Consensus 164 ~~~~g~~~~a~~~~~ 178 (258)
.++.|+.+-+.-+++
T Consensus 82 A~~~~~~~~v~~Ll~ 96 (165)
T 3twr_A 82 ACSYGHYEVAELLVK 96 (165)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHh
Confidence 334455444444443
No 294
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=50.52 E-value=44 Score=21.19 Aligned_cols=51 Identities=10% Similarity=0.190 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHH-----HcCCccc
Q 038429 202 EKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIE-----KNGIKMD 254 (258)
Q Consensus 202 ~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~-----~~g~~p~ 254 (258)
-.|.++.++....|+.|+..+..-++..|..-+. + +.++.++.. ..|..|+
T Consensus 26 Vsae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFsts~~g~~pT 81 (101)
T 2keb_A 26 ASAQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCTSTHKVGLT 81 (101)
T ss_dssp CCHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHHHHTCSBCC
T ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHhcCCCCCC
Confidence 3467777888888888888888888888777664 2 555555432 3455554
No 295
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=50.07 E-value=25 Score=20.84 Aligned_cols=38 Identities=11% Similarity=0.085 Sum_probs=29.6
Q ss_pred ChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcc
Q 038429 103 EPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFR 141 (258)
Q Consensus 103 ~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~ 141 (258)
..++|...|.+|..+.++.|+. +|...+..++...++.
T Consensus 13 t~eea~~~F~~LL~e~~V~~~~-tWe~~~~~i~~DpRY~ 50 (71)
T 1uzc_A 13 TKEEAKQAFKELLKEKRVPSNA-SWEQAMKMIINDPRYS 50 (71)
T ss_dssp SHHHHHHHHHHHHHHTTCCTTC-CHHHHHHHHHTSGGGG
T ss_pred CHHHHHHHHHHHHHHcCcCCCC-CHHHHHHHHccCcccc
Confidence 4688999999998888887764 7888888777766554
No 296
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=49.59 E-value=48 Score=22.51 Aligned_cols=47 Identities=13% Similarity=0.096 Sum_probs=25.0
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCh
Q 038429 190 SMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDL 236 (258)
Q Consensus 190 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~ 236 (258)
.++..+...+..-.|.++++.+.+.+...+..|.-.-|+.+...|-+
T Consensus 26 ~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 26 AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 34444444444555666666666655445555554555555554443
No 297
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=48.97 E-value=55 Score=21.58 Aligned_cols=43 Identities=5% Similarity=-0.071 Sum_probs=30.1
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHc
Q 038429 207 LYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHIEKN 249 (258)
Q Consensus 207 ~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 249 (258)
+|+.+....+.|+...--.-|..+...++++.|..++..+...
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~ 90 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVD 90 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Confidence 5666666677666555555555667778999999998887654
No 298
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=47.96 E-value=20 Score=22.65 Aligned_cols=63 Identities=11% Similarity=0.224 Sum_probs=41.0
Q ss_pred HHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCCCChhhHHHHHHHHhcCCChhhH
Q 038429 41 RIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQS 107 (258)
Q Consensus 41 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a 107 (258)
.+++.+.+.|+- +......+-. ..... ..+.|.++++.+++.+..+|..++.++...|+..-|
T Consensus 25 ~vld~L~~~~vl-t~~~~e~I~~-~~~~t--~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 25 QLWDVLLSRELF-RPHMIEDIQR-AGSGS--RRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp TTHHHHHHTTSS-CHHHHHHHHT-STTCC--HHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHcCCC-CHHHHHHHHh-ccCCC--hHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 356666666644 3333333322 11113 678888888888888888889999988877775544
No 299
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=47.23 E-value=46 Score=22.21 Aligned_cols=65 Identities=11% Similarity=0.180 Sum_probs=44.4
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCC--hhHHHHHHHHHHHcCCc
Q 038429 187 SWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRD--LEFGIWVSSHIEKNGIK 252 (258)
Q Consensus 187 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~ 252 (258)
..+.+|.-|...|+.++|.+-++++....+. .......+..++-+.++ .+....++..+.+.|+-
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 4567889999999999999999998632111 22344555666666542 46677888888777643
No 300
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=44.83 E-value=87 Score=25.29 Aligned_cols=47 Identities=13% Similarity=0.110 Sum_probs=23.6
Q ss_pred cccchhhHHHHHHHHHhhccCcchhh--hhhhhhhhhccCCCChHHHHHHhccCC
Q 038429 32 FLTNQKQLKRIHAQMLSTDFFFDPYS--ASKLFTPCALSTFSSLEYARKMFDQIP 84 (258)
Q Consensus 32 ~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~li~~~~~~~~~~~~~a~~~~~~m~ 84 (258)
..|+++.++. +.+.|..++... ..+.+...+..| +.+-+..+++.-.
T Consensus 23 ~~g~~~~v~~----Ll~~g~~~~~~~~~~~t~L~~A~~~g--~~~~v~~Ll~~g~ 71 (437)
T 1n11_A 23 FMGHLPIVKN----LLQRGASPNVSNVKVETPLHMAARAG--HTEVAKYLLQNKA 71 (437)
T ss_dssp HHTCHHHHHH----HHHTTCCSCCSSSCCCCHHHHHHHHT--CHHHHHHHHHHTC
T ss_pred HCCCHHHHHH----HHHcCCCCCCCCCCCCCHHHHHHHcC--CHHHHHHHHhCCC
Confidence 3444444333 334455444322 234455555666 7777766666543
No 301
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=43.94 E-value=25 Score=27.11 Aligned_cols=31 Identities=19% Similarity=0.217 Sum_probs=19.2
Q ss_pred cCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 038429 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIG 181 (258)
Q Consensus 151 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 181 (258)
+.|...-..|+.-+|-.|++++|.+=++...
T Consensus 28 P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a 58 (273)
T 1zbp_A 28 PKDASLRSSFIELLCIDGDFERADEQLMQSI 58 (273)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3455555666677777777777766555443
No 302
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=43.91 E-value=1.5e+02 Score=25.24 Aligned_cols=56 Identities=5% Similarity=0.021 Sum_probs=33.6
Q ss_pred hhhhhhhhhhccCCCChHHHHHHhccCCCCCh-hhHHH-------HHHHHhcCCChhhHHHHHHHh
Q 038429 57 SASKLFTPCALSTFSSLEYARKMFDQIPQPNL-YTWNT-------LIRAYSSSDEPIQSFMIFLQL 114 (258)
Q Consensus 57 ~~~~li~~~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~-------li~~~~~~g~~~~a~~~~~~m 114 (258)
.+|.+++-|...+ .++.|..+.+...-|.. .+-+. +-+.+.-.+++.+|.+.|...
T Consensus 233 l~nllLRnYL~~~--~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 233 LINLILRDFLNNG--EVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHHSS--CSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHccC--cHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 4677777777777 77777777776544321 22222 223444556777777777665
No 303
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=42.90 E-value=36 Score=22.66 Aligned_cols=18 Identities=11% Similarity=0.050 Sum_probs=7.0
Q ss_pred HHHhcCCHHHHHHHHHhc
Q 038429 163 FYAVCGDLAMAYCVFVMI 180 (258)
Q Consensus 163 ~~~~~g~~~~a~~~~~~m 180 (258)
.+...+..-.|.++++.+
T Consensus 19 ~l~~~~~~~sa~ei~~~l 36 (131)
T 2o03_A 19 LLETLDDFRSAQELHDEL 36 (131)
T ss_dssp HHHHCCSCEEHHHHHHHH
T ss_pred HHHhCCCCCCHHHHHHHH
Confidence 333333333444444433
No 304
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=42.47 E-value=28 Score=19.75 Aligned_cols=46 Identities=13% Similarity=0.012 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHHcCCCCChhhHHHHHHHH-hc------cCC-hhHHHHHHHHH
Q 038429 201 FEKAIELYREMEVENVKPDEVTMVVVLSAC-AK------KRD-LEFGIWVSSHI 246 (258)
Q Consensus 201 ~~~a~~~~~~m~~~~~~p~~~t~~~li~~~-~~------~g~-~~~a~~~~~~m 246 (258)
.++|+..|.+|.+..-.+..-||...++.+ ++ ..+ ..+=.++|+..
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i~i~DPrY~al~d~~~eRK~~Fe~Y 55 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISELGTRDPRYWMVDDDPLWKKEMFEKY 55 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHCTHHHHSCCCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCCCccccccCCHHHHHHHHHHH
Confidence 468889998888765446678888888887 43 232 44445555543
No 305
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=42.22 E-value=52 Score=22.34 Aligned_cols=48 Identities=8% Similarity=-0.133 Sum_probs=26.8
Q ss_pred HHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCC
Q 038429 91 WNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQ 139 (258)
Q Consensus 91 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~ 139 (258)
-..++..+...+..-.|.++++.+ ++.+...+..|..--|+.+...|-
T Consensus 24 R~~Il~~L~~~~~~~sa~ei~~~l-~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 24 RHAILEYLVNSMAHPTADDIYKAL-EGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHHHHHHHCSSCCCHHHHHHHH-GGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHH-HHhCCCCChhhHHHHHHHHHHCCC
Confidence 344555555555556666666666 555545555555555555555553
No 306
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus}
Probab=41.87 E-value=1e+02 Score=22.82 Aligned_cols=76 Identities=13% Similarity=0.200 Sum_probs=40.6
Q ss_pred CHHHHHHHHHhcCCC--ChhhHHHHHHHHHcC----C-----------ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHh
Q 038429 169 DLAMAYCVFVMIGKK--DVVSWNSMISGFVEG----G-----------FFEKAIELYREMEVENVKPDEVTMVVVLSACA 231 (258)
Q Consensus 169 ~~~~a~~~~~~m~~~--~~~~~~~li~~~~~~----g-----------~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~ 231 (258)
..++...+|+..-.. ...++.-+...+... | .-+++..+|+.+...| -...+|.-++..+.
T Consensus 163 ~~~~l~~~F~~~D~d~dG~I~~~Ef~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~D~d~--dG~Is~~Ef~~~~~ 240 (256)
T 2jul_A 163 VHEKLKWAFNLYDINKDGCITKEEMLAIMKSIYDMMGRHTYPILREDAPLEHVERFFQKMDRNQ--DGVVTIDEFLETCQ 240 (256)
T ss_dssp HHHHHHHHHHHTCCSSSSCBCHHHHHHHHHHHHHHCCCCCSCCSCCCCHHHHHHHHHHHSCCST--TCSBCHHHHHHHHH
T ss_pred hHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHhCCCCCcccchhhHHHHHHHHHHHHCCCC--CCcEeHHHHHHHHH
Confidence 345556666655432 334455444443322 2 2244555555554332 12356777777777
Q ss_pred ccCChhHHHHHHHHH
Q 038429 232 KKRDLEFGIWVSSHI 246 (258)
Q Consensus 232 ~~g~~~~a~~~~~~m 246 (258)
+...+-++...++.+
T Consensus 241 ~~~~l~~~l~~~d~~ 255 (256)
T 2jul_A 241 KDENIMNSMQLFENV 255 (256)
T ss_dssp HCSSHHHHHHHHHHH
T ss_pred hCHHHHHHHHhhccc
Confidence 777777777776654
No 307
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=41.68 E-value=31 Score=23.32 Aligned_cols=7 Identities=14% Similarity=0.074 Sum_probs=3.1
Q ss_pred HcCCccc
Q 038429 248 KNGIKMD 254 (258)
Q Consensus 248 ~~g~~p~ 254 (258)
..|+.++
T Consensus 114 ~~gf~i~ 120 (139)
T 3mwm_A 114 EHGYVNV 120 (139)
T ss_dssp HTTCCSC
T ss_pred hCCCEEE
Confidence 3455443
No 308
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=41.63 E-value=95 Score=22.24 Aligned_cols=86 Identities=7% Similarity=-0.010 Sum_probs=51.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC---------ChhhHHHH
Q 038429 159 SLIHFYAVCGDLAMAYCVFVMIGKK---DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKP---------DEVTMVVV 226 (258)
Q Consensus 159 ~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p---------~~~t~~~l 226 (258)
+.+...++.|+.+-+.-+++.-..+ |..-.+. +...+..|+.+-+..+++.+.+.|..+ |..-.+.
T Consensus 123 t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~-L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tp- 200 (232)
T 2rfa_A 123 HPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTV-LHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTP- 200 (232)
T ss_dssp SHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH-HHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCH-
T ss_pred CHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCH-HHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCH-
Confidence 3455566778887777777653333 3333333 444567788888877788888877543 3333333
Q ss_pred HHHHhccCChhHHHHHHHHH
Q 038429 227 LSACAKKRDLEFGIWVSSHI 246 (258)
Q Consensus 227 i~~~~~~g~~~~a~~~~~~m 246 (258)
+...++.|+.+-+..+++.=
T Consensus 201 l~~A~~~g~~~~v~~Ll~~g 220 (232)
T 2rfa_A 201 FKLAGVEGNIVMFQHLMQKR 220 (232)
T ss_dssp HHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhcC
Confidence 44445667777666665544
No 309
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=41.59 E-value=67 Score=22.34 Aligned_cols=46 Identities=11% Similarity=0.119 Sum_probs=22.8
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHc--CCCCChhhHHHHHHHHhccCC
Q 038429 190 SMISGFVEGGFFEKAIELYREMEVE--NVKPDEVTMVVVLSACAKKRD 235 (258)
Q Consensus 190 ~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~t~~~li~~~~~~g~ 235 (258)
.++..+...+..-.|.++++.+.+. +...+..|.-.-|+.+...|-
T Consensus 37 ~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 37 VLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 3444444444555566666666554 444444454444444444443
No 310
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=41.49 E-value=82 Score=21.48 Aligned_cols=46 Identities=11% Similarity=0.112 Sum_probs=22.4
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCC
Q 038429 190 SMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRD 235 (258)
Q Consensus 190 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~ 235 (258)
.++..+...+..-.|.++++.+.+.+...+..|.-.-|+.+...|-
T Consensus 31 ~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 31 EVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 3344444444445566666666555444455554444444444443
No 311
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=41.36 E-value=1.2e+02 Score=24.36 Aligned_cols=28 Identities=11% Similarity=0.094 Sum_probs=17.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCC
Q 038429 157 SNSLIHFYAVCGDLAMAYCVFVMIGKKD 184 (258)
Q Consensus 157 ~~~li~~~~~~g~~~~a~~~~~~m~~~~ 184 (258)
...+|.-|...|+.++|.+.++++..|+
T Consensus 15 ~~~ii~EY~~~~D~~Ea~~~l~eL~~p~ 42 (364)
T 3l6a_A 15 TETVVTEYLNSGNANEAVNGVREMRAPK 42 (364)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCCG
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCch
Confidence 3456666666666666666666666553
No 312
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=40.39 E-value=37 Score=22.61 Aligned_cols=49 Identities=8% Similarity=-0.094 Sum_probs=37.4
Q ss_pred HHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcc
Q 038429 92 NTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFR 141 (258)
Q Consensus 92 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~ 141 (258)
..++..+...+.+-.|.++++.+ ++.+...+..|..-.|+.+...|-+.
T Consensus 14 ~~Il~~l~~~~~~~sa~ei~~~l-~~~~~~is~~TVYR~L~~L~e~Glv~ 62 (131)
T 2o03_A 14 AAISTLLETLDDFRSAQELHDEL-RRRGENIGLTTVYRTLQSMASSGLVD 62 (131)
T ss_dssp HHHHHHHHHCCSCEEHHHHHHHH-HHTTCCCCHHHHHHHHHHHHTTTSEE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHH-HHhCCCCCHhhHHHHHHHHHHCCCEE
Confidence 35677777777788999999999 77776777778777788888777543
No 313
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=40.19 E-value=57 Score=21.68 Aligned_cols=19 Identities=11% Similarity=0.314 Sum_probs=11.0
Q ss_pred hhhhhccCCCChHHHHHHhcc
Q 038429 62 FTPCALSTFSSLEYARKMFDQ 82 (258)
Q Consensus 62 i~~~~~~~~~~~~~a~~~~~~ 82 (258)
+...++.| +.+.+..+++.
T Consensus 6 L~~A~~~g--~~~~v~~ll~~ 24 (156)
T 1bd8_A 6 LSGAAARG--DVQEVRRLLHR 24 (156)
T ss_dssp HHHHHHHT--CHHHHHHHHHT
T ss_pred HHHHHHhC--CHHHHHHHHHh
Confidence 33444555 66666666665
No 314
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=39.71 E-value=1.2e+02 Score=23.26 Aligned_cols=68 Identities=19% Similarity=0.079 Sum_probs=43.1
Q ss_pred HHHHhcCCHHHHHHHHHhcC--CC-ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcC--CCCChhhHHHHHHH
Q 038429 162 HFYAVCGDLAMAYCVFVMIG--KK-DVVSWNSMISGFVEGGFFEKAIELYREMEVEN--VKPDEVTMVVVLSA 229 (258)
Q Consensus 162 ~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~t~~~li~~ 229 (258)
....+.|+++++++....-. +| |...=..|+..+|-.|+|+.|..=++-..+.. ..|-..+|..+|.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH
Confidence 34556788888887765443 24 55566677888888888888887776665532 22333455555554
No 315
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=39.22 E-value=31 Score=23.30 Aligned_cols=49 Identities=10% Similarity=-0.073 Sum_probs=36.0
Q ss_pred HHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcc
Q 038429 92 NTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFR 141 (258)
Q Consensus 92 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~ 141 (258)
..++..+...+.+-.|.++++.+ ++.+...+..|.---|+.+...|-+.
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l-~~~~~~is~aTVYR~L~~L~e~Glv~ 65 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDML-KHKGDAVGLTTVYRTLQSLADAGEVD 65 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHH-HHTTCCCCHHHHHHHHHHHHHTTSSE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHH-HHhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 45677777777788888899888 77776777777766777777776543
No 316
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=39.22 E-value=2.4e+02 Score=26.11 Aligned_cols=52 Identities=12% Similarity=0.087 Sum_probs=30.4
Q ss_pred HHHHhcCcCCcchhhhhhhcccCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 038429 130 VIKAAARPVQFRVGQAIHGMFEDDLVISNSLIHFYAVCGDLAMAYCVFVMIG 181 (258)
Q Consensus 130 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 181 (258)
++..|...+..+.+..+....+.+...--.+-.+|...|++++|.+.|++.-
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHhcHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 4444555555555555555554454444455566667777777777776543
No 317
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=39.14 E-value=67 Score=19.78 Aligned_cols=63 Identities=14% Similarity=0.108 Sum_probs=44.2
Q ss_pred HHHHHHHHHhhccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCCCChhhHHHHHHHHhcCCChhhH
Q 038429 39 LKRIHAQMLSTDFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQS 107 (258)
Q Consensus 39 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a 107 (258)
...+++.+.+.|+- +..-+..+-.. .. ..+.|..+++.+...+..+|..++.++.+.+...-|
T Consensus 24 v~~lld~L~~~~vl-t~~~~e~I~~~---~t--~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 24 TSYIMDHMISDGFL-TISEEEKVRNE---PT--QQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp HHHHHHHHHHHTSS-CHHHHHHHHTS---SS--HHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHCCCC-CHHHHHHHHcC---CC--hHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHH
Confidence 45677777777754 34444444332 34 788899999988888889999999999888764433
No 318
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=38.98 E-value=2.3e+02 Score=26.26 Aligned_cols=157 Identities=10% Similarity=0.031 Sum_probs=80.9
Q ss_pred ccCCCChHHHHHHhccCC-CCChhh--HHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcc-hHH---HHHHHhcCcCC
Q 038429 67 LSTFSSLEYARKMFDQIP-QPNLYT--WNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF-TLP---FVIKAAARPVQ 139 (258)
Q Consensus 67 ~~~~~~~~~a~~~~~~m~-~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~---~ll~~~~~~~~ 139 (258)
..|.++-+....++..+. ..+... ...+--++...|+.+.+..+++.+ ... .+.. -|. ++.-+|+..|+
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L-~~~---~dp~vRygaa~alglAyaGTGn 575 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKM-LAS---DESLLRYGGAFTIALAYAGTGN 575 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHH-HHC---SCHHHHHHHHHHHHHHTTTSCC
T ss_pred hcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHH-HhC---CCHHHHHHHHHHHHHHhcCCCC
Confidence 334446666666655432 122222 233334444778888888888887 432 2222 233 34456788888
Q ss_pred cchhhhhhhcc--cCchhHHHHHHHH--HHhcCCHHHHHHHHHhcCC-CChhh--HHHHHHHHHcCCCh-HHHHHHHHHH
Q 038429 140 FRVGQAIHGMF--EDDLVISNSLIHF--YAVCGDLAMAYCVFVMIGK-KDVVS--WNSMISGFVEGGFF-EKAIELYREM 211 (258)
Q Consensus 140 ~~~a~~~~~~~--~~~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~-~~~~~--~~~li~~~~~~g~~-~~a~~~~~~m 211 (258)
......+++.+ .++..+-...+-+ +...|+.+.+.++++.+.+ .|..+ --.+.-+....|.. .++..++..+
T Consensus 576 ~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L 655 (963)
T 4ady_A 576 NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPL 655 (963)
T ss_dssp HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHH
Confidence 87777787777 3332333333333 3345666666666654432 23322 22233333434443 5677777777
Q ss_pred HHcCCCCChhhHHHHHHHH
Q 038429 212 EVENVKPDEVTMVVVLSAC 230 (258)
Q Consensus 212 ~~~~~~p~~~t~~~li~~~ 230 (258)
... +|..+-...+-++
T Consensus 656 ~~D---~d~~Vrq~Ai~AL 671 (963)
T 4ady_A 656 TKD---PVDFVRQAAMIAL 671 (963)
T ss_dssp HTC---SSHHHHHHHHHHH
T ss_pred ccC---CCHHHHHHHHHHH
Confidence 643 4444443344343
No 319
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium binding protein, apoptosis, calcium, endoplasmic reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB: 2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Probab=38.91 E-value=50 Score=22.56 Aligned_cols=41 Identities=7% Similarity=0.356 Sum_probs=20.3
Q ss_pred HHHHHHHHhcCC--CChhhHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 038429 171 AMAYCVFVMIGK--KDVVSWNSMISGFVEGGFFEKAIELYREMEVE 214 (258)
Q Consensus 171 ~~a~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 214 (258)
+.+..+|..+.. ....+|.-++..+... +....+|+.+...
T Consensus 110 ~~~~~~~~~~d~~~dg~i~~~eF~~~~~~~---~~~~~~F~~~D~d 152 (172)
T 2znd_A 110 QFHDILIRKFDRQGRGQIAFDDFIQGCIVL---QRLTDIFRRYDTD 152 (172)
T ss_dssp HHHHHHHHHHCTTCSSSEEHHHHHHHHHHH---HHHHHHHHHHCTT
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHHHH---HHHHHHHHHhCCC
Confidence 444555555432 2345566555555432 4455566655433
No 320
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=38.12 E-value=1.3e+02 Score=23.78 Aligned_cols=23 Identities=4% Similarity=-0.054 Sum_probs=13.0
Q ss_pred HHHHHHhcCcCCcchhhhhhhcc
Q 038429 128 PFVIKAAARPVQFRVGQAIHGMF 150 (258)
Q Consensus 128 ~~ll~~~~~~~~~~~a~~~~~~~ 150 (258)
..++.-|...|+.++|.+.++.+
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el 37 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQEL 37 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHc
Confidence 44555555555555555555555
No 321
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=37.26 E-value=43 Score=23.14 Aligned_cols=65 Identities=11% Similarity=0.180 Sum_probs=43.7
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCC--hhHHHHHHHHHHHcCCc
Q 038429 187 SWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRD--LEFGIWVSSHIEKNGIK 252 (258)
Q Consensus 187 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~ 252 (258)
..+.+|.-|...|+.++|.+-++++....+. .......+..++-+.++ .+....++..+.+.|+-
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 4677899999999999999999998632111 23344555556665433 45677788887776643
No 322
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=37.00 E-value=54 Score=22.42 Aligned_cols=50 Identities=4% Similarity=-0.081 Sum_probs=28.7
Q ss_pred hhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCC
Q 038429 89 YTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQ 139 (258)
Q Consensus 89 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~ 139 (258)
.--..++..+...+.+-.|.++++.+ ++.+...+..|.---|+.+...|-
T Consensus 27 ~qR~~IL~~l~~~~~~~sa~ei~~~l-~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 27 KQREEVVSVLYRSGTHLSPEEITHSI-RQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHHHHHHHHHHCSSCBCHHHHHHHH-HHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHH-HHhCCCCCHhhHHHHHHHHHHCCc
Confidence 33445555555555566677777776 555545555555555555555554
No 323
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=35.70 E-value=1.4e+02 Score=22.34 Aligned_cols=84 Identities=12% Similarity=-0.064 Sum_probs=43.9
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC-------C---ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 038429 161 IHFYAVCGDLAMAYCVFVMIGK-------K---DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSAC 230 (258)
Q Consensus 161 i~~~~~~g~~~~a~~~~~~m~~-------~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~ 230 (258)
++.+....++++|.++.++.++ + +...-...+..-.....-.-+..+.+++.. .++.......+..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~L 101 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTENM 101 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHH
Confidence 4556666777777666654432 1 111222223322322333334444444422 34555566667777
Q ss_pred hccCChhHHHHHHHHHH
Q 038429 231 AKKRDLEFGIWVSSHIE 247 (258)
Q Consensus 231 ~~~g~~~~a~~~~~~m~ 247 (258)
.+.|+-++|.++|-+..
T Consensus 102 ~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 102 IKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHCCChhHHHHHHHHHH
Confidence 77788888877776554
No 324
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=35.36 E-value=47 Score=22.26 Aligned_cols=11 Identities=18% Similarity=0.045 Sum_probs=4.5
Q ss_pred HHHHHHHHHhc
Q 038429 170 LAMAYCVFVMI 180 (258)
Q Consensus 170 ~~~a~~~~~~m 180 (258)
.-.|.++++.+
T Consensus 34 ~~sa~ei~~~l 44 (136)
T 1mzb_A 34 HMSAEDVYKAL 44 (136)
T ss_dssp SBCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 33344444433
No 325
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=34.11 E-value=41 Score=23.47 Aligned_cols=22 Identities=14% Similarity=0.354 Sum_probs=10.1
Q ss_pred HHHHHHhcCCChhhHHHHHHHh
Q 038429 93 TLIRAYSSSDEPIQSFMIFLQL 114 (258)
Q Consensus 93 ~li~~~~~~g~~~~a~~~~~~m 114 (258)
.++..+...+.+-.|.++++.+
T Consensus 37 ~IL~~L~~~~~h~sA~eI~~~l 58 (162)
T 4ets_A 37 VLLKTLYHSDTHYTPESLYMEI 58 (162)
T ss_dssp HHHHHHHSCCSCBCHHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHH
Confidence 3444444444444445555444
No 326
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=32.89 E-value=1.3e+02 Score=21.21 Aligned_cols=24 Identities=8% Similarity=-0.110 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHh
Q 038429 156 ISNSLIHFYAVCGDLAMAYCVFVM 179 (258)
Q Consensus 156 ~~~~li~~~~~~g~~~~a~~~~~~ 179 (258)
+...+.+++...|.+..|...|++
T Consensus 65 ~l~~ladalf~~~eyrrA~~~y~q 88 (167)
T 3ffl_A 65 LLVYHADSLFHDKEYRNAVSKYTM 88 (167)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHH
Confidence 345556667777777777777765
No 327
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=32.10 E-value=70 Score=22.13 Aligned_cols=69 Identities=7% Similarity=-0.000 Sum_probs=30.9
Q ss_pred HHHHHHHHhcCCC---ChhhH-HHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHH
Q 038429 171 AMAYCVFVMIGKK---DVVSW-NSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSS 244 (258)
Q Consensus 171 ~~a~~~~~~m~~~---~~~~~-~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~ 244 (258)
+....++..+.+. |-.-| ...+....+.| .....+-.++.+.|+. ..+....+..+-. ...+.|..+..
T Consensus 47 ~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g--~G~~~I~~eL~~KGI~--~~~i~~al~~~~~-d~~~~a~~l~~ 119 (159)
T 3c1d_A 47 EDYERVIAWCHEHGYLDDSRFVARFIASRSRKG--YGPARIRQELNQKGIS--REATEKAMREADI-DWAALARDQAT 119 (159)
T ss_dssp HHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTT--CCHHHHHHHHHHTTCC--HHHHHHHHHHHCC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHcCCC--HHHHHHHHHHcCH-hHHHHHHHHHH
Confidence 4444455444432 32233 34444444433 2244566677777763 3334444444322 33444555444
No 328
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=31.97 E-value=1.4e+02 Score=21.34 Aligned_cols=178 Identities=7% Similarity=-0.048 Sum_probs=90.8
Q ss_pred hhhhhhhccCCCChHHHHHHhccCCCC---ChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchH--HHHHHHh
Q 038429 60 KLFTPCALSTFSSLEYARKMFDQIPQP---NLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTL--PFVIKAA 134 (258)
Q Consensus 60 ~li~~~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~--~~ll~~~ 134 (258)
+.+...+..| +.+.+..+++....+ +..-++ .+...+..|+.+-+ +.+ .+.|..++.... .+.+...
T Consensus 13 t~L~~A~~~g--~~~~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~v----~~L-l~~g~~~~~~~~~g~t~L~~A 84 (237)
T 3b7b_A 13 SPLHAAAEAG--HVDICHMLVQAGANIDTCSEDQRT-PLMEAAENNHLEAV----KYL-IKAGALVDPKDAEGSTCLHLA 84 (237)
T ss_dssp CHHHHHHHHT--CHHHHHHHHHTTCCTTCCCTTCCC-HHHHHHHTTCHHHH----HHH-HTTTCCCCCCCTTSCCHHHHH
T ss_pred CHHHHHHHcC--cHHHHHHHHHcCCCcCccCCCCCC-HHHHHHHhCCHHHH----HHH-HhCCCCCCCCCCCCCcHHHHH
Confidence 3455566777 888888888765432 222233 34444556765433 333 344444433211 1234444
Q ss_pred cCcCCcchhhhhhhcc-----cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHcCCChHHHHH
Q 038429 135 ARPVQFRVGQAIHGMF-----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKK---DVVSWNSMISGFVEGGFFEKAIE 206 (258)
Q Consensus 135 ~~~~~~~~a~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~a~~ 206 (258)
+..|+.+.+..+++.- ..+..-+ +.+...++.|+.+-+.-+++.-..+ +....+.+ ...+..|+.+
T Consensus 85 ~~~~~~~~~~~Ll~~~~~~~~~~~~~g~-t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~---- 158 (237)
T 3b7b_A 85 AKKGHYEVVQYLLSNGQMDVNCQDDGGW-TPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICL-HWAAFSGCVD---- 158 (237)
T ss_dssp HHTTCHHHHHHHHTTTCCCTTCCCTTSC-CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHHCCHH----
T ss_pred HHcCCHHHHHHHHhCCCCCcccCCCCCC-CHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHH-HHHHHCCCHH----
Confidence 5667777766666553 1222222 3455566778888777777654433 22222233 3334456654
Q ss_pred HHHHHHHcCCCCChhh--HHHHHHHHhccCChhHHHHHHHHHHHcCCcccc
Q 038429 207 LYREMEVENVKPDEVT--MVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255 (258)
Q Consensus 207 ~~~~m~~~~~~p~~~t--~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 255 (258)
+++.+.+.|..++... -.+.+...++.|+.+ +++.+.+.|..++.
T Consensus 159 ~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~gad~~~ 205 (237)
T 3b7b_A 159 IAEILLAAKCDLHAVNIHGDSPLHIAARENRYD----CVVLFLSRDSDVTL 205 (237)
T ss_dssp HHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHH----HHHHHHTTTCCTTC
T ss_pred HHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHh----HHHHHHHcCCCCCc
Confidence 4444556666554322 112334445566655 44555566766653
No 329
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=31.45 E-value=50 Score=19.16 Aligned_cols=47 Identities=15% Similarity=0.039 Sum_probs=36.5
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccC
Q 038429 187 SWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKR 234 (258)
Q Consensus 187 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g 234 (258)
.++.++..++...-+++++..+++..+.|. .+..+|.--++.+++.-
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g~-I~l~~ylK~vR~LaReQ 50 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRGT-IPLDTFVKQGRELARQQ 50 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHH
Confidence 467788888888788999999999998874 56777777777776643
No 330
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=31.40 E-value=48 Score=22.21 Aligned_cols=49 Identities=8% Similarity=-0.008 Sum_probs=30.2
Q ss_pred HHHHHHHHhcCC-ChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCc
Q 038429 91 WNTLIRAYSSSD-EPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQF 140 (258)
Q Consensus 91 ~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~ 140 (258)
-..++..+...+ .+-.|.++++.+ ++.+...+..|..--|+.+...|-+
T Consensus 20 R~~Il~~L~~~~~~~~sa~ei~~~l-~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 20 RVKILQMLDSAEQRHMSAEDVYKAL-MEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHHHHHHHCC-CCSBCHHHHHHHH-HHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHH-HhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 345566666655 667777777777 6666556666665556666555543
No 331
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=30.77 E-value=2.1e+02 Score=22.97 Aligned_cols=84 Identities=13% Similarity=0.100 Sum_probs=35.3
Q ss_pred HHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhh---HHHHHHHHhccCC
Q 038429 162 HFYAVCGDLAMAYCVFVMIGK---KDVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVT---MVVVLSACAKKRD 235 (258)
Q Consensus 162 ~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t---~~~li~~~~~~g~ 235 (258)
...++.|+.+-+.-+++.-.. .+....+.|.. .+..|+.+-+ +.+.+.|..++... .+.|..+ ++.|+
T Consensus 283 ~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~-A~~~g~~~~v----~~Ll~~gad~n~~~~~g~t~L~~A-~~~g~ 356 (437)
T 1n11_A 283 HLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHV-ASHYGNIKLV----KFLLQHQADVNAKTKLGYSPLHQA-AQQGH 356 (437)
T ss_dssp HHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHH-HHHSSCSHHH----HHHHHTTCCTTCCCTTSCCHHHHH-HHTTC
T ss_pred HHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHH-HHHcCcHHHH----HHHHhcCCCCCCCCCCCCCHHHHH-HHCCh
Confidence 334455665555555543222 12222233322 3344554433 33334454443321 2333333 33454
Q ss_pred hhHHHHHHHHHHHcCCcccc
Q 038429 236 LEFGIWVSSHIEKNGIKMDL 255 (258)
Q Consensus 236 ~~~a~~~~~~m~~~g~~p~~ 255 (258)
.+ +++.+.+.|..|+.
T Consensus 357 ~~----iv~~Ll~~ga~~~~ 372 (437)
T 1n11_A 357 TD----IVTLLLKNGASPNE 372 (437)
T ss_dssp HH----HHHHHHHTTCCSCC
T ss_pred HH----HHHHHHHCcCCCCC
Confidence 43 44555556666653
No 332
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=30.47 E-value=92 Score=18.81 Aligned_cols=37 Identities=19% Similarity=0.368 Sum_probs=24.4
Q ss_pred HHhccCCC--CChhhHHHHHHHHhcCCChhhHHHHHHHh
Q 038429 78 KMFDQIPQ--PNLYTWNTLIRAYSSSDEPIQSFMIFLQL 114 (258)
Q Consensus 78 ~~~~~m~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m 114 (258)
.++++++. |++.||+-+...+-+..-..++..+.+++
T Consensus 24 ~LL~kIPnLPpgVnTW~qI~el~qkk~i~~~~m~iik~i 62 (81)
T 2ko4_A 24 QLLQRIPNIPPNINTWQQVTALAQQKLLTPQDMEAAKEV 62 (81)
T ss_dssp HHHTTSSSCCTTTCBHHHHHHHHTTTSSCHHHHHHHHHH
T ss_pred HHHhhCCCCCCCcchHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 45555554 77888888777766666566666666555
No 333
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=30.31 E-value=96 Score=22.75 Aligned_cols=152 Identities=7% Similarity=-0.139 Sum_probs=76.0
Q ss_pred HHHHhcCCChhhHHHHHHHhHhcCCCCCCcc-------hHHHHHHHhc--CcCCcchhhhhhhcc---------------
Q 038429 95 IRAYSSSDEPIQSFMIFLQLVYNSPYFPNEF-------TLPFVIKAAA--RPVQFRVGQAIHGMF--------------- 150 (258)
Q Consensus 95 i~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~-------~~~~ll~~~~--~~~~~~~a~~~~~~~--------------- 150 (258)
+...++.|+.+....+++.+ .+.|..++.. -.+.|..+.. +.|+.+.+..+++.-
T Consensus 9 L~~A~~~g~~~~v~~ll~~l-~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~ 87 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFL-LTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFR 87 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHH-HHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBC
T ss_pred HHHHHHhCCHHHHHHHHHHH-HhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccccc
Confidence 33445567777666666655 4444444422 2234444332 556666666665543
Q ss_pred cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh-----------------hhHHHHHHHHHcCCChHHHHHHHHHHHH
Q 038429 151 EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDV-----------------VSWNSMISGFVEGGFFEKAIELYREMEV 213 (258)
Q Consensus 151 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-----------------~~~~~li~~~~~~g~~~~a~~~~~~m~~ 213 (258)
..|.. -.+.+...+..|+.+-+.-+++.-..++. ...+.| ...+..|+.+-+. .+.+
T Consensus 88 ~~d~~-g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL-~~A~~~g~~~~v~----~Ll~ 161 (260)
T 3jxi_A 88 DVYYR-GQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPL-SLAACTNQPHIVH----YLTE 161 (260)
T ss_dssp CSSEE-SBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHH-HHHHHTTCHHHHH----HHHH
T ss_pred ccccC-CCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHH-HHHHHcCCHHHHH----HHHh
Confidence 11112 22345556677888877777775443322 233344 4445567755443 4445
Q ss_pred ---cCCCCCh---hhHHHHHHHHhccCC----hhHHHHHHHHHHHcCCcc
Q 038429 214 ---ENVKPDE---VTMVVVLSACAKKRD----LEFGIWVSSHIEKNGIKM 253 (258)
Q Consensus 214 ---~~~~p~~---~t~~~li~~~~~~g~----~~~a~~~~~~m~~~g~~p 253 (258)
.|..++. .-.+.|..++..... .+...++++.+.+.|..+
T Consensus 162 ~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~ 211 (260)
T 3jxi_A 162 NGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKL 211 (260)
T ss_dssp CSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCccc
Confidence 5555433 334455555432221 222345666666666544
No 334
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=29.78 E-value=58 Score=22.11 Aligned_cols=47 Identities=9% Similarity=-0.092 Sum_probs=29.6
Q ss_pred HHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCc
Q 038429 92 NTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQF 140 (258)
Q Consensus 92 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~ 140 (258)
..++..+...+ .-.|.++++.+ ++.+...+..|.---|+.+...|-+
T Consensus 22 ~~Il~~l~~~~-h~ta~ei~~~l-~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 22 QLVLEAVDTLE-HATPDDILGEV-RKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHHHHHHHHS-SBCHHHHHHHH-HTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHHhcC-CCCHHHHHHHH-HhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 44555555555 66777888877 6666666666665566666665543
No 335
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=29.52 E-value=80 Score=17.79 Aligned_cols=22 Identities=5% Similarity=-0.050 Sum_probs=15.9
Q ss_pred cCChhHHHHHHHHHHHcCCccc
Q 038429 233 KRDLEFGIWVSSHIEKNGIKMD 254 (258)
Q Consensus 233 ~g~~~~a~~~~~~m~~~g~~p~ 254 (258)
.|+++.|...+-+|...+..|+
T Consensus 36 ~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 36 RGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp TTCHHHHHHHHHHSSCCCCSCC
T ss_pred CCCHHHHHHHHHcCcCCCCCCC
Confidence 5778888877777776666665
No 336
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=29.37 E-value=56 Score=22.65 Aligned_cols=79 Identities=9% Similarity=0.097 Sum_probs=48.1
Q ss_pred HHHHHHHHHhh-----ccCcchhhhhhhhhhhhccCCCChHHHHHHhccCCC-----CChhhHHHHHHHHhcCCChhhHH
Q 038429 39 LKRIHAQMLST-----DFFFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQ-----PNLYTWNTLIRAYSSSDEPIQSF 108 (258)
Q Consensus 39 a~~~~~~m~~~-----~~~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~-----~~~~~~~~li~~~~~~g~~~~a~ 108 (258)
...+++...+. ....|+.-...-|...-.+. + +..+|..|.. .-..-|-.-...+-..|++.+|.
T Consensus 47 l~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~~--d---p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~ 121 (152)
T 4a1g_A 47 LITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEYNS--D---LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHAS 121 (152)
T ss_dssp HHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTTBS--C---HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcccccccCCHHHHHHHHHHHHhcC--C---HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 34455554432 44455554444333333333 3 6677776654 34455788888888899999999
Q ss_pred HHHHHhHhcCCCCCC
Q 038429 109 MIFLQLVYNSPYFPN 123 (258)
Q Consensus 109 ~~~~~m~~~~~~~p~ 123 (258)
.+|+.= .+.+-.|-
T Consensus 122 ~Vy~~G-i~~~A~P~ 135 (152)
T 4a1g_A 122 AVLQRG-IQNQAEPR 135 (152)
T ss_dssp HHHHHH-HHTTCBSH
T ss_pred HHHHHH-HHcCCccH
Confidence 999887 55666663
No 337
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=27.87 E-value=80 Score=18.63 Aligned_cols=47 Identities=15% Similarity=0.109 Sum_probs=25.5
Q ss_pred HHHHHHHcCC-ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCh
Q 038429 190 SMISGFVEGG-FFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDL 236 (258)
Q Consensus 190 ~li~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~ 236 (258)
.++..+...+ ..-.+.++++.+.+.+...+..|....++.+.+.|-+
T Consensus 21 ~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 21 KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 3444444433 3445666666666655445566666666666555544
No 338
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=27.71 E-value=56 Score=22.34 Aligned_cols=12 Identities=33% Similarity=0.376 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHc
Q 038429 203 KAIELYREMEVE 214 (258)
Q Consensus 203 ~a~~~~~~m~~~ 214 (258)
.|.++++.+.+.
T Consensus 35 sa~ei~~~l~~~ 46 (150)
T 2w57_A 35 SAEELYKKLIDL 46 (150)
T ss_dssp EHHHHHHHHHHT
T ss_pred CHHHHHHHHHHh
Confidence 344444444443
No 339
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=27.44 E-value=1.8e+02 Score=21.21 Aligned_cols=42 Identities=14% Similarity=0.106 Sum_probs=28.7
Q ss_pred hHHHHHHhccCCC-CChh-------hHHHHHHHHhcCCChhhHHHHHHHh
Q 038429 73 LEYARKMFDQIPQ-PNLY-------TWNTLIRAYSSSDEPIQSFMIFLQL 114 (258)
Q Consensus 73 ~~~a~~~~~~m~~-~~~~-------~~~~li~~~~~~g~~~~a~~~~~~m 114 (258)
++.|..+|+.+.. .+.. .--..+..|.+.|.+++|.++|++.
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~ 143 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERI 143 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 6788999988875 2211 1223455677888888888888874
No 340
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=26.84 E-value=47 Score=18.76 Aligned_cols=24 Identities=13% Similarity=-0.069 Sum_probs=16.1
Q ss_pred CCChhhHHHHHHHhHhcCCCCCCc
Q 038429 101 SDEPIQSFMIFLQLVYNSPYFPNE 124 (258)
Q Consensus 101 ~g~~~~a~~~~~~m~~~~~~~p~~ 124 (258)
.-+++.|+..|.++.....++|+.
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eA 56 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVA 56 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHH
Confidence 357888999998883344555543
No 341
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=26.40 E-value=44 Score=20.91 Aligned_cols=15 Identities=13% Similarity=0.355 Sum_probs=9.0
Q ss_pred HHHHHHHcCCccccc
Q 038429 242 VSSHIEKNGIKMDLT 256 (258)
Q Consensus 242 ~~~~m~~~g~~p~~~ 256 (258)
..++++..|+.||++
T Consensus 25 kinELk~dG~ePDIi 39 (103)
T 2pk8_A 25 KMNELKMDGFNPDII 39 (103)
T ss_dssp HHHHHHHTTCCCCEE
T ss_pred HHHHHHhcCCCCCeE
Confidence 344556667777654
No 342
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=26.01 E-value=3.9e+02 Score=24.63 Aligned_cols=124 Identities=10% Similarity=0.006 Sum_probs=75.8
Q ss_pred hhhhhhccCCCChHHHHHHhccCCCCChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCc
Q 038429 61 LFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQF 140 (258)
Q Consensus 61 li~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~ 140 (258)
++..+...+ ..+-+.++....+. +...--.+..+|...|++++|...|++. ..|+..+...... .
T Consensus 816 l~~~L~~~~--~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kA--A~gl~~~~~~~~~----------~ 880 (950)
T 4gq2_M 816 LVEKLFLFK--QYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTT--SLVLYSHTSQFAV----------L 880 (950)
T ss_dssp HHHHHHHTT--CHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTC--CCTTCSSCCSCGG----------G
T ss_pred HHHHHHHhc--HHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHH--hhhcccCcccccc----------h
Confidence 566666777 88888887777764 4444456888899999999999999876 2344332211100 0
Q ss_pred chhhhhhhcc---cCchhHHHHHHHHHHhcCCHHHHHHHHHhc----CCCCh----hhHHHHHHHHHcCC
Q 038429 141 RVGQAIHGMF---EDDLVISNSLIHFYAVCGDLAMAYCVFVMI----GKKDV----VSWNSMISGFVEGG 199 (258)
Q Consensus 141 ~~a~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m----~~~~~----~~~~~li~~~~~~g 199 (258)
.....++... .....-|..++..|-+.+.++.+.++-+.. ...|. ..|+.++++.+..|
T Consensus 881 ~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 881 REFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 0111111111 112236788889999999998887766533 22233 36777777776544
No 343
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=25.86 E-value=1.3e+02 Score=20.33 Aligned_cols=31 Identities=10% Similarity=0.025 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHhc
Q 038429 202 EKAIELYREMEVENVKPDEVTMVVVLSACAK 232 (258)
Q Consensus 202 ~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~ 232 (258)
-.|.++++.+.+.+...+..|.-.-|+.+..
T Consensus 34 ~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e 64 (145)
T 3eyy_A 34 ATPDDILGEVRKTASGINISTVYRTLELLEE 64 (145)
T ss_dssp BCHHHHHHHHHTTCTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhhCCCCCHhHHHHHHHHHHH
Confidence 3455555555444433344443333333333
No 344
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=25.57 E-value=2.2e+02 Score=21.65 Aligned_cols=16 Identities=6% Similarity=0.031 Sum_probs=7.1
Q ss_pred HHHhcCCHHHHHHHHH
Q 038429 163 FYAVCGDLAMAYCVFV 178 (258)
Q Consensus 163 ~~~~~g~~~~a~~~~~ 178 (258)
..++.|+.+-+.-+++
T Consensus 64 ~A~~~g~~~~v~~Ll~ 79 (351)
T 3utm_A 64 LAAGYNRVRIVQLLLQ 79 (351)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHH
Confidence 3344455444444444
No 345
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=25.39 E-value=1.6e+02 Score=21.85 Aligned_cols=18 Identities=17% Similarity=0.303 Sum_probs=8.7
Q ss_pred HHhccCChhHHHHHHHHH
Q 038429 229 ACAKKRDLEFGIWVSSHI 246 (258)
Q Consensus 229 ~~~~~g~~~~a~~~~~~m 246 (258)
.|.+.|.+++|.++++..
T Consensus 123 VCiek~~f~kA~eiLkr~ 140 (235)
T 3bu8_A 123 ICIKNKEFEKASKILKKH 140 (235)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHhcchHHHHHHHHHH
Confidence 344445555555555444
No 346
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=25.05 E-value=1.4e+02 Score=23.24 Aligned_cols=152 Identities=8% Similarity=-0.016 Sum_probs=77.4
Q ss_pred CChhhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcch--HHHHHHHhcCcCCcchhhhhhhcc-cCchhHHHHHHH
Q 038429 86 PNLYTWNTLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFT--LPFVIKAAARPVQFRVGQAIHGMF-EDDLVISNSLIH 162 (258)
Q Consensus 86 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~~~li~ 162 (258)
.|..-++.|.. .+..|+.+-+..++ +.|..++... -.+.+...+..|+.+.+..+++.- .++...-.+.+.
T Consensus 16 ~d~~g~t~L~~-Aa~~g~~~~v~~Ll-----~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~ 89 (364)
T 3ljn_A 16 SDDENMEKIHV-AARKGQTDEVRRLI-----ETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIH 89 (364)
T ss_dssp CCHHHHHHHHH-HHHHTCHHHHHHHH-----HTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHH
T ss_pred cCCCCCCHHHH-HHHcCCHHHHHHHH-----HcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCHHH
Confidence 44555555544 44557755544443 3444444322 123445555667777777666655 333322334555
Q ss_pred HHHhcCCHHHHHHHHHhc----CCCCh--------------------hhHHHHHHHHHcCC--ChHHHHHHHHHHHHcCC
Q 038429 163 FYAVCGDLAMAYCVFVMI----GKKDV--------------------VSWNSMISGFVEGG--FFEKAIELYREMEVENV 216 (258)
Q Consensus 163 ~~~~~g~~~~a~~~~~~m----~~~~~--------------------~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~ 216 (258)
..+..|+.+-+..+++.- ..++. ...+.|.. .+..| +.+ +++.+.+.|.
T Consensus 90 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~-A~~~g~~~~~----~v~~Ll~~ga 164 (364)
T 3ljn_A 90 LAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHW-CVGLGPEYLE----MIKILVQLGA 164 (364)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHH-HHHSCGGGHH----HHHHHHHHTC
T ss_pred HHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHH-HHHcCCchHH----HHHHHHHcCC
Confidence 566778888877777752 22111 12334443 44555 444 3344445577
Q ss_pred CCChhhH--HHHHHHHhccCChhHHHHHHHHHHHcCCc
Q 038429 217 KPDEVTM--VVVLSACAKKRDLEFGIWVSSHIEKNGIK 252 (258)
Q Consensus 217 ~p~~~t~--~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 252 (258)
.++.... .+.+...+..|+.+- ++.+.+.|..
T Consensus 165 ~~~~~d~~g~t~L~~A~~~g~~~~----v~~Ll~~g~~ 198 (364)
T 3ljn_A 165 SPTAKDKADETPLMRAMEFRNREA----LDLMMDTVPS 198 (364)
T ss_dssp CTTCCCTTSCCHHHHHHHTTCHHH----HHHHHHHCSC
T ss_pred CCcccCCCCCCHHHHHHHcCCHHH----HHHHHhcccc
Confidence 7776542 233444455676654 4444445543
No 347
>3enp_A TP53RK-binding protein; keops complex telomere kinase regulator, nucleus, hydrolase; 2.48A {Homo sapiens}
Probab=24.50 E-value=1.7e+02 Score=20.77 Aligned_cols=87 Identities=9% Similarity=0.054 Sum_probs=46.1
Q ss_pred cCCCCCCCceeeecCCCccCcccccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCCC----ChHHHHHHhccCCC
Q 038429 10 SIPRHPNPTTLTVNNGHQRHPHFLTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTFS----SLEYARKMFDQIPQ 85 (258)
Q Consensus 10 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~----~~~~a~~~~~~m~~ 85 (258)
..+..|+......+.. +..-+.++.+++....+. . .+|++-.=.+.. -...|..-+..-..
T Consensus 8 ~l~~fp~~~v~i~LF~---------~V~Na~~l~~~l~~~~~~--~----a~idA~~I~s~~hll~Ai~kAl~~~~~g~l 72 (177)
T 3enp_A 8 QLDLFPECRVTLLLFK---------DVKNAGDLRRKAMEGTID--G----SLINPTVIVDPFQILVAANKAVHLYKLGKM 72 (177)
T ss_dssp ECSSCTTCEEEEEEEE---------SCSCHHHHHHHHHHTCSC--S----EEECGGGCSCHHHHHHHHHHHHHHHTTTCC
T ss_pred ecCCCCCCEEEEEEEC---------CCCCHHHHHHHHHcCCCC--E----EEEChhHhCCHHHHHHHHHHHHHHHHcCCc
Confidence 3456676444444433 566688888888776532 1 111111111100 11223333333333
Q ss_pred CChhhHHHHHHHHhcCCChhhHHHHH
Q 038429 86 PNLYTWNTLIRAYSSSDEPIQSFMIF 111 (258)
Q Consensus 86 ~~~~~~~~li~~~~~~g~~~~a~~~~ 111 (258)
.+...+..++..++-.+++.+|++-|
T Consensus 73 ~Tr~l~sEIl~~LSp~~nI~eAlkrf 98 (177)
T 3enp_A 73 KTRTLSTEIIFNLSPNNNISEALKKF 98 (177)
T ss_dssp SSSSHHHHHHHHHCSSSCHHHHHHHH
T ss_pred CcCChHHHHhhhhCccccHHHHHHHh
Confidence 44444688999999999999887544
No 348
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=24.34 E-value=59 Score=22.24 Aligned_cols=48 Identities=8% Similarity=-0.004 Sum_probs=28.2
Q ss_pred HHHHHHHhcCC-ChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCc
Q 038429 92 NTLIRAYSSSD-EPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQF 140 (258)
Q Consensus 92 ~~li~~~~~~g-~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~ 140 (258)
..++..+...+ .+-.|.++++.+ ++.+...+..|..--|+.+...|-+
T Consensus 20 ~~Il~~L~~~~~~h~sa~ei~~~l-~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 20 LKILEVLQQPECQHISAEELYKKL-IDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHHHTSGGGSSEEHHHHHHHH-HHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHH-HHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 34555555554 566677777777 6555555666655556666555543
No 349
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=24.33 E-value=1.1e+02 Score=20.93 Aligned_cols=82 Identities=11% Similarity=-0.174 Sum_probs=49.4
Q ss_pred ccchhhHHHHHHHHHhhccCcchhhhhhhhhhhhccCC-CChHHHHHHhccCCC--C--ChhhHHHHHHHHhcCCChhhH
Q 038429 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCALSTF-SSLEYARKMFDQIPQ--P--NLYTWNTLIRAYSSSDEPIQS 107 (258)
Q Consensus 33 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~-~~~~~a~~~~~~m~~--~--~~~~~~~li~~~~~~g~~~~a 107 (258)
..++....+-+..-. +-.|+..+-=....++.++.. .+..+...+++...+ | .....--|.-++.+.|++++|
T Consensus 19 ~eeL~~lr~qY~~E~--~~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~A 96 (144)
T 1y8m_A 19 PQQLEILRQQVVSEG--GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMA 96 (144)
T ss_dssp HHHHHHHHHHHHHTT--STTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHHHHHhc--cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHH
Confidence 344444444444321 235666665555556666650 134556666665532 2 333455677899999999999
Q ss_pred HHHHHHhHh
Q 038429 108 FMIFLQLVY 116 (258)
Q Consensus 108 ~~~~~~m~~ 116 (258)
.+..+.+.+
T Consensus 97 r~y~d~lL~ 105 (144)
T 1y8m_A 97 KRYVDTLFE 105 (144)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998843
No 350
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=23.98 E-value=86 Score=21.19 Aligned_cols=66 Identities=12% Similarity=-0.174 Sum_probs=43.4
Q ss_pred ccCcchhhhhhhhhhhhccCC-CChHHHHHHhccCCC--C--ChhhHHHHHHHHhcCCChhhHHHHHHHhH
Q 038429 50 DFFFDPYSASKLFTPCALSTF-SSLEYARKMFDQIPQ--P--NLYTWNTLIRAYSSSDEPIQSFMIFLQLV 115 (258)
Q Consensus 50 ~~~~~~~~~~~li~~~~~~~~-~~~~~a~~~~~~m~~--~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 115 (258)
+-.|++.+-=....++.++.. .+...+..+++...+ | ....+--|.-++.+.|++++|.+..+.+.
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL 105 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 105 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 446666664455555555551 144566666665532 2 34456678889999999999999999883
No 351
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=23.94 E-value=2e+02 Score=20.38 Aligned_cols=170 Identities=9% Similarity=-0.025 Sum_probs=83.1
Q ss_pred ccccchhhHHHHHHHHHhhccCcchhh---hhhhhhhhhccCCCChHHHHHHhccCCCC---ChhhHHHHHHHHhcCCCh
Q 038429 31 HFLTNQKQLKRIHAQMLSTDFFFDPYS---ASKLFTPCALSTFSSLEYARKMFDQIPQP---NLYTWNTLIRAYSSSDEP 104 (258)
Q Consensus 31 ~~~~~~~~a~~~~~~m~~~~~~~~~~~---~~~li~~~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~g~~ 104 (258)
...|+.+ +.+.+.+.|..++... -...+...+..| +.+-+..+++.-..+ +...++ .+...++.|+.
T Consensus 50 ~~~~~~~----~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~--~~~~v~~Ll~~g~~~~~~~~~g~t-~l~~A~~~~~~ 122 (240)
T 3eu9_A 50 AINNRID----LVKYYISKGAIVDQLGGDLNSTPLHWATRQG--HLSMVVQLMKYGADPSLIDGEGCS-CIHLAAQFGHT 122 (240)
T ss_dssp HHTTCHH----HHHHHHHTTCCTTCCBTTTTBCHHHHHHHHT--CHHHHHHHHHTTCCTTCCCTTSCC-HHHHHHHTTCH
T ss_pred HHhCCHH----HHHHHHHcCCcchhhcCCcCCChhHHHHHcC--CHHHHHHHHHcCCCCcccCCCCCC-HHHHHHHcCHH
Confidence 3345554 4444555554433221 234556666777 888888888764432 222223 33444556665
Q ss_pred hhHHHHHHHhHhcCCCCCCc---chHHHHHHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhcCCHHHHHHHH
Q 038429 105 IQSFMIFLQLVYNSPYFPNE---FTLPFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVF 177 (258)
Q Consensus 105 ~~a~~~~~~m~~~~~~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~ 177 (258)
+- ++.+ .+.|..++. .-.+.+..++.+.+..+...-+.+.- ..+...-.+.+...++.|+.+-+.-++
T Consensus 123 ~~----~~~L-l~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 197 (240)
T 3eu9_A 123 SI----VAYL-IAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLL 197 (240)
T ss_dssp HH----HHHH-HHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred HH----HHHH-HhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHH
Confidence 43 3333 334444432 22334444443333333333332222 222212334667777889988887777
Q ss_pred HhcCCCCh---hhHHHHHHHHHcCCChHHHHHHHHHHHH
Q 038429 178 VMIGKKDV---VSWNSMISGFVEGGFFEKAIELYREMEV 213 (258)
Q Consensus 178 ~~m~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~ 213 (258)
+.-..++. ...+ -+....+.|+.+-+..+++...+
T Consensus 198 ~~g~~~~~~~~~g~t-~l~~A~~~~~~~~v~~L~~~~~~ 235 (240)
T 3eu9_A 198 EAGANVDAQNIKGES-ALDLAKQRKNVWMINHLQEARQA 235 (240)
T ss_dssp HHTCCTTCBCTTSCB-HHHHHHHTTCHHHHHHHHHHC--
T ss_pred HcCCCCCCcCCCCCC-HHHHHHHcCcHHHHHHHHHhhhc
Confidence 76444322 2222 34444666777666655554433
No 352
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=23.65 E-value=2.2e+02 Score=20.85 Aligned_cols=87 Identities=9% Similarity=0.008 Sum_probs=48.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCChh----hHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhH--HHHHHHHhcc
Q 038429 160 LIHFYAVCGDLAMAYCVFVMIGKKDVV----SWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTM--VVVLSACAKK 233 (258)
Q Consensus 160 li~~~~~~g~~~~a~~~~~~m~~~~~~----~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~--~~li~~~~~~ 233 (258)
.+...++.|+.+-+.-+++.-..++.. .++.| ...+..|+.+ +++.+.+.|..|+.... .+.+...++.
T Consensus 161 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL-~~A~~~~~~~----~v~~Ll~~gad~~~~d~~g~tpL~~A~~~ 235 (282)
T 1oy3_D 161 PLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPL-HLAVEAQAAS----VLELLLKAGADPTARMYGGRTPLGSALLR 235 (282)
T ss_dssp HHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHH-HHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHTS
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHH-HHHHHcCCHH----HHHHHHHcCCCCcccccCCCCHHHHHHHc
Confidence 455566778888888777765444322 33344 4445667654 44444566766655431 2233444556
Q ss_pred CChhHHHHHHHHHHHcCCcccc
Q 038429 234 RDLEFGIWVSSHIEKNGIKMDL 255 (258)
Q Consensus 234 g~~~~a~~~~~~m~~~g~~p~~ 255 (258)
|+.+ +++.+.+.|..++.
T Consensus 236 ~~~~----~v~~Ll~~ga~~~~ 253 (282)
T 1oy3_D 236 PNPI----LARLLRAHGAPEPE 253 (282)
T ss_dssp SCHH----HHHHHHHTTCCCCC
T ss_pred CCcH----HHHHHHHcCCCcCc
Confidence 6654 55666677776653
No 353
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=23.58 E-value=2.3e+02 Score=21.11 Aligned_cols=132 Identities=13% Similarity=0.078 Sum_probs=62.1
Q ss_pred HHHhHhcCCCCCCcch---HHHHHHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC
Q 038429 111 FLQLVYNSPYFPNEFT---LPFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKK 183 (258)
Q Consensus 111 ~~~m~~~~~~~p~~~~---~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 183 (258)
+..+ .+.|..+|... ++. +...+..|+.+.+..+++.- ..+..- .+.+...+..+..+-...+++.-..+
T Consensus 69 v~~L-l~~Gadvn~~d~~G~Tp-Lh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g-~t~l~~a~~~~~~~~~~~Ll~~g~~~ 145 (269)
T 4b93_B 69 LAKV-PASGLGVNVTSQDGSSP-LHVAALHGRADLIPLLLKHGANAGARNADQ-AVPLHLACQQGHFQVVKCLLDSNAKP 145 (269)
T ss_dssp -------CCCCTTCCCTTSCCH-HHHHHHTTCTTHHHHHHHTTCCTTCCCTTC-CCHHHHHHHHTCHHHHHHHHHTTCCS
T ss_pred HHHH-HHCCCCCCCcCCCCCCH-HHHHHHcCcHHHHHHHHhcCCCcCccCCCC-CCccccccccChHHHHHHHHHCCCCC
Confidence 3344 55566554432 222 33445567776666555544 111111 12344455667766666666543333
Q ss_pred ---ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhh---HHHHHHHHhccCChhHHHHHHHHHHHcCCcccc
Q 038429 184 ---DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVT---MVVVLSACAKKRDLEFGIWVSSHIEKNGIKMDL 255 (258)
Q Consensus 184 ---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t---~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 255 (258)
|..-++.|..+ +..|+.+-+..++ +.|..++... .+.|..+ +..|+.+ +++.+.+.|..|+.
T Consensus 146 n~~d~~g~TpL~~A-~~~g~~~~v~~Ll----~~gadvn~~~~~g~t~Lh~A-~~~g~~~----~v~~Ll~~Gad~~~ 213 (269)
T 4b93_B 146 NKKDLSGNTPLIYA-CSGGHHELVALLL----QHGASINASNNKGNTALHEA-VIEKHVF----VVELLLLHGASVQV 213 (269)
T ss_dssp CCCCTTCCCHHHHH-HHTTCGGGHHHHH----HTTCCTTCBCTTSCBHHHHH-HHTTCHH----HHHHHHHTTCCSCC
T ss_pred CCCCCCCCCHHHHH-HHCCCHHHHHHHH----HCCCCCCccccCCCcHHHHH-HHcCCHH----HHHHHHHCCCCCCC
Confidence 33334445444 5567766544443 4565554332 3333333 4556665 44555567766654
No 354
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=23.33 E-value=1.3e+02 Score=22.50 Aligned_cols=82 Identities=11% Similarity=0.046 Sum_probs=42.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHcCCChHHHHHHHHHHHH-cCCCCChhhH--HHHHHHHhc
Q 038429 159 SLIHFYAVCGDLAMAYCVFVMIGKK---DVVSWNSMISGFVEGGFFEKAIELYREMEV-ENVKPDEVTM--VVVLSACAK 232 (258)
Q Consensus 159 ~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~p~~~t~--~~li~~~~~ 232 (258)
+.+...++.|+.+-+.-+++.-..+ |..-++.|..+ +..|+.+-+. .+.+ .|..++.... .+.+...++
T Consensus 185 tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A-~~~g~~~iv~----~Ll~~~gad~~~~d~~g~TpL~~A~~ 259 (276)
T 4hbd_A 185 TALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCA-CEHGHKEIAG----LLLAVPSCDISLTDRDGSTALMVALD 259 (276)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH-HHHTCHHHHH----HHHTSTTCCTTCCCTTSCCHHHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHH-HHCCCHHHHH----HHHhcCCCCCcCcCCCCCCHHHHHHH
Confidence 3445556678877777776653333 43444455444 4445554433 3344 4554443221 223344455
Q ss_pred cCChhHHHHHHHH
Q 038429 233 KRDLEFGIWVSSH 245 (258)
Q Consensus 233 ~g~~~~a~~~~~~ 245 (258)
.|+.+-+..+++.
T Consensus 260 ~g~~~iv~~Ll~~ 272 (276)
T 4hbd_A 260 AGQSEIASMLYSR 272 (276)
T ss_dssp HTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHhc
Confidence 6777777666654
No 355
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=23.32 E-value=2.2e+02 Score=20.83 Aligned_cols=20 Identities=10% Similarity=0.197 Sum_probs=10.4
Q ss_pred hhhhhccCCCChHHHHHHhccC
Q 038429 62 FTPCALSTFSSLEYARKMFDQI 83 (258)
Q Consensus 62 i~~~~~~~~~~~~~a~~~~~~m 83 (258)
+...+..| +.+-+..+++.-
T Consensus 40 L~~A~~~g--~~~~v~~Ll~~g 59 (261)
T 2xai_A 40 LHEACLGG--HLSCVKILLKHG 59 (261)
T ss_dssp HHHHHHHT--CHHHHHHHHHTT
T ss_pred HHHHHHcC--CHHHHHHHHHCC
Confidence 33444455 666666555543
No 356
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=23.30 E-value=1.2e+02 Score=21.59 Aligned_cols=18 Identities=6% Similarity=-0.101 Sum_probs=9.3
Q ss_pred HHHHhcCCHHHHHHHHHh
Q 038429 162 HFYAVCGDLAMAYCVFVM 179 (258)
Q Consensus 162 ~~~~~~g~~~~a~~~~~~ 179 (258)
...++.|+.+-+.-+++.
T Consensus 112 ~~A~~~~~~~~~~~Ll~~ 129 (228)
T 2dzn_A 112 HLAVGKKWFEVSQFLIEN 129 (228)
T ss_dssp HHHHHTTCHHHHHHHHHT
T ss_pred HHHHHcCCHhHHHHHHHc
Confidence 334455666555555544
No 357
>2es9_A Putative cytoplasmic protein; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG; 2.00A {Salmonella typhimurium} SCOP: a.247.1.1 PDB: 2jn8_A
Probab=22.69 E-value=1e+02 Score=19.24 Aligned_cols=12 Identities=8% Similarity=-0.059 Sum_probs=8.0
Q ss_pred HHHHHHHHHhcC
Q 038429 170 LAMAYCVFVMIG 181 (258)
Q Consensus 170 ~~~a~~~~~~m~ 181 (258)
+++|+++...|.
T Consensus 13 IdKALDFI~~M~ 24 (115)
T 2es9_A 13 IEKALDFIGGMN 24 (115)
T ss_dssp HHHHHHHHHTSC
T ss_pred HHHHHHHhcccc
Confidence 466777777665
No 358
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=22.09 E-value=1.1e+02 Score=22.43 Aligned_cols=153 Identities=8% Similarity=-0.050 Sum_probs=76.2
Q ss_pred HHHHhcCCChhhHHHHHHHhHhcCCCCCCc-------chHHHHHHHhcC--cCCcchhhhhhhcc-cCc-----------
Q 038429 95 IRAYSSSDEPIQSFMIFLQLVYNSPYFPNE-------FTLPFVIKAAAR--PVQFRVGQAIHGMF-EDD----------- 153 (258)
Q Consensus 95 i~~~~~~g~~~~a~~~~~~m~~~~~~~p~~-------~~~~~ll~~~~~--~~~~~~a~~~~~~~-~~~----------- 153 (258)
+...++.|+.+.+..+++.+ .+.|..++. .-.+.|..++.. .|+.+.++.+++.- .++
T Consensus 6 L~~A~~~g~~~~v~~ll~~l-~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~ 84 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYL-RWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCT 84 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHH-HHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCC
T ss_pred HHHHHHcCCHHHHHHHHHHH-HHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccc
Confidence 44455667777666666655 444444332 223344333322 36666666665543 111
Q ss_pred -h-hHHHHHHHHHHhcCCHHHHHHHHHhcCCCChh----------------hHHHHHHHHHcCCChHHHHHHHHHHHH--
Q 038429 154 -L-VISNSLIHFYAVCGDLAMAYCVFVMIGKKDVV----------------SWNSMISGFVEGGFFEKAIELYREMEV-- 213 (258)
Q Consensus 154 -~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~----------------~~~~li~~~~~~g~~~~a~~~~~~m~~-- 213 (258)
. ..-.+.+...+..|+.+-+.-+++.-..++.. ..+.|. ..+..|+.+-+. .+.+
T Consensus 85 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~-~A~~~~~~~~v~----~Ll~~~ 159 (256)
T 2etb_A 85 DEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLS-LAACTKQWDVVT----YLLENP 159 (256)
T ss_dssp STTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHH-HHHHTTCHHHHH----HHHHCS
T ss_pred cccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHH-HHHHcCCHHHHH----HHHhcc
Confidence 0 12334555666788888888777764433221 334444 445567765444 4445
Q ss_pred -cCCCCCh---hhHHHHHHHHhc-cCChh---HHHHHHHHHHHcCCcc
Q 038429 214 -ENVKPDE---VTMVVVLSACAK-KRDLE---FGIWVSSHIEKNGIKM 253 (258)
Q Consensus 214 -~~~~p~~---~t~~~li~~~~~-~g~~~---~a~~~~~~m~~~g~~p 253 (258)
.|..++. .-.+.|..++.. .+..+ ...++++.+.+.|..+
T Consensus 160 ~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~ 207 (256)
T 2etb_A 160 HQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARL 207 (256)
T ss_dssp SCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCc
Confidence 5555433 334455555432 45544 2223555555555444
No 359
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=21.88 E-value=1.8e+02 Score=19.09 Aligned_cols=82 Identities=10% Similarity=0.044 Sum_probs=38.5
Q ss_pred HHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc----cCchhHHHHHHHHHHhcC
Q 038429 93 TLIRAYSSSDEPIQSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF----EDDLVISNSLIHFYAVCG 168 (258)
Q Consensus 93 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~li~~~~~~g 168 (258)
..+...++.|+.+.+..+++.- . .+..+..-. +.+...+..|+.+.++.+++.- ..+..-. +.+...+..|
T Consensus 4 ~~L~~A~~~g~~~~v~~Ll~~g-~--~~~~~~~g~-t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~ 78 (153)
T 1awc_B 4 KKLLEAARAGQDDEVRILMANG-A--PFTTDWLGT-SPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDR-TPLHMAASEG 78 (153)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHT-C--CCCCCTTCC-CHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCC-CHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHcC-C--CCCcCCCCC-CHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCC-CHHHHHHHcC
Confidence 3445556667766665555432 1 111222222 2333444556666665555543 1222222 2334445566
Q ss_pred CHHHHHHHHHh
Q 038429 169 DLAMAYCVFVM 179 (258)
Q Consensus 169 ~~~~a~~~~~~ 179 (258)
+.+-+.-+++.
T Consensus 79 ~~~~v~~Ll~~ 89 (153)
T 1awc_B 79 HANIVEVLLKH 89 (153)
T ss_dssp CHHHHHHHHTT
T ss_pred hHHHHHHHHHc
Confidence 76665555554
No 360
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=21.57 E-value=2.5e+02 Score=20.78 Aligned_cols=186 Identities=9% Similarity=-0.044 Sum_probs=101.1
Q ss_pred CcchhhhhhhhhhhhccCCCChHHHHHHhccCCCCChhhHHHHHHHHhcCCChh----hHHHHHHHhHhcCCCCCCcchH
Q 038429 52 FFDPYSASKLFTPCALSTFSSLEYARKMFDQIPQPNLYTWNTLIRAYSSSDEPI----QSFMIFLQLVYNSPYFPNEFTL 127 (258)
Q Consensus 52 ~~~~~~~~~li~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~----~a~~~~~~m~~~~~~~p~~~~~ 127 (258)
.++..+-...+.++++.+ .-+....+.+.+..++...-...+.++++.|... ..+.++..+... .++..+-
T Consensus 34 ~~~~~vr~~A~~~L~~~~--~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~---d~~~~vr 108 (280)
T 1oyz_A 34 DHNSLKRISSARVLQLRG--GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALN---DKSACVR 108 (280)
T ss_dssp CSSHHHHHHHHHHHHHHC--CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHH---CSCHHHH
T ss_pred cCCHHHHHHHHHHHHccC--CchHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhc---CCCHHHH
Confidence 356666666777777777 6555555555556677766667777777776432 223334321011 2455555
Q ss_pred HHHHHHhcCcCC-----cchh-hhhhhcc-cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHcCC-
Q 038429 128 PFVIKAAARPVQ-----FRVG-QAIHGMF-EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKKDVVSWNSMISGFVEGG- 199 (258)
Q Consensus 128 ~~ll~~~~~~~~-----~~~a-~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g- 199 (258)
...+.++++.+. ...+ ..+...+ .++..+-...+.++++.|+.+..-.+...+..++...-...+.++...|
T Consensus 109 ~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 188 (280)
T 1oyz_A 109 ATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKY 188 (280)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---CCHHHHHHHHTCSSHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcc
Confidence 556666665542 1122 2222333 6777777777888888877544444555556677665555666665554
Q ss_pred ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHH
Q 038429 200 FFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSH 245 (258)
Q Consensus 200 ~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~ 245 (258)
.-..+...+..+.. .+|...-...+.++.+.|+..-...+...
T Consensus 189 ~~~~~~~~L~~~l~---d~~~~vR~~A~~aL~~~~~~~~~~~L~~~ 231 (280)
T 1oyz_A 189 DNSDIRDCFVEMLQ---DKNEEVRIEAIIGLSYRKDKRVLSVLCDE 231 (280)
T ss_dssp CCHHHHHHHHHHTT---CSCHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred CcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHhCCHhhHHHHHHH
Confidence 22344444444433 24556666666777777755443333333
No 361
>1jog_A Hypothetical protein HI0074; structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: a.24.16.2
Probab=21.14 E-value=96 Score=21.17 Aligned_cols=54 Identities=6% Similarity=-0.078 Sum_probs=29.5
Q ss_pred hhhHHHHHHHhHhcCCCCC---CcchHHHHHHHhcCcCCcchhhhhhhcc----cCchhHHH
Q 038429 104 PIQSFMIFLQLVYNSPYFP---NEFTLPFVIKAAARPVQFRVGQAIHGMF----EDDLVISN 158 (258)
Q Consensus 104 ~~~a~~~~~~m~~~~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~ 158 (258)
++-++++.++.....|..| ++.++..++..+.+.|-++... .+..| ...+++|+
T Consensus 54 ~Elawk~~k~~L~~~g~~~~~~~~~s~rd~~r~a~~~GlI~d~~-~w~~m~~~RN~tvH~Y~ 114 (146)
T 1jog_A 54 YELSLKMMKRQLQQDAINTDDIGAYGFKDILREALRFGLIGDMS-KWVAYRDMRNITSHTYD 114 (146)
T ss_dssp HHHHHHHHHHHHHHHTCSCCCTTSCCHHHHHHHHHHTTSCSCHH-HHHHHHHHHTTGGGTTS
T ss_pred HHHHHHHHHHHHHHcCCCccccCCCCHHHHHHHHHHcCCCCcHH-HHHHHHHHhhHhccccc
Confidence 3455555555544455554 3566777777777777665553 33333 44455554
No 362
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=21.06 E-value=2.3e+02 Score=20.09 Aligned_cols=88 Identities=8% Similarity=-0.063 Sum_probs=49.3
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCCh----------------hhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhh--
Q 038429 161 IHFYAVCGDLAMAYCVFVMIGKKDV----------------VSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVT-- 222 (258)
Q Consensus 161 i~~~~~~g~~~~a~~~~~~m~~~~~----------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t-- 222 (258)
+...+..|+.+-+.-+++.-..++. ...+.|. ..+..|+.+-+ +.+.+.|..++...
T Consensus 79 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~-~A~~~~~~~~v----~~Ll~~ga~~~~~d~~ 153 (232)
T 2rfa_A 79 LHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLS-FAACVGSEEIV----RLLIEHGADIRAQDSL 153 (232)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHH-HHHHHTCHHHH----HHHHHTTCCTTCCCTT
T ss_pred HHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHH-HHHHcCCHHHH----HHHHHCCCCCCCCCCC
Confidence 3444556666666666654333221 2333443 33455665444 44445666554332
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHcCCcc
Q 038429 223 MVVVLSACAKKRDLEFGIWVSSHIEKNGIKM 253 (258)
Q Consensus 223 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 253 (258)
-.+.+...+..|+.+-+.++++.+.+.|-.+
T Consensus 154 g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~ 184 (232)
T 2rfa_A 154 GNTVLHILILQPNKTFACQMYNLLLSYDGGD 184 (232)
T ss_dssp SCCHHHHHHTCSCHHHHHHHHHHHHHTTCSC
T ss_pred CCCHHHHHHHcCChHHHHHHHHHHHhcCCch
Confidence 1234455567788888888888888888655
No 363
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=21.05 E-value=1.3e+02 Score=21.54 Aligned_cols=68 Identities=12% Similarity=0.154 Sum_probs=39.0
Q ss_pred HHHHHHHHHhcCCC--ChhhHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHH
Q 038429 170 LAMAYCVFVMIGKK--DVVSWNSMISGFVEGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSHI 246 (258)
Q Consensus 170 ~~~a~~~~~~m~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m 246 (258)
.....++.+.++.. +-.-.-.+|.++...|++++|.++..++... +..... ..+.++..-|--++.+.
T Consensus 15 l~~~~~~~~~LR~qrHdf~NkLqvI~GLlql~~ydea~~yI~~~~~~--------~q~~~~-~~~i~~P~la~lLl~K~ 84 (192)
T 1ixm_A 15 TALTNELIHLLGHSRHDWMNKLQLIKGNLSLQKYDRVFEMIEEMVID--------AKHESK-LSNLKTPHLAFDFLTFN 84 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------HHHHHH-HHTTTCHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------HHHHHH-HHhCCCHHHHHHHHHHH
Confidence 34444444444432 2222335688888888888888888877643 111222 45567766666665554
No 364
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=20.70 E-value=2.2e+02 Score=19.79 Aligned_cols=28 Identities=14% Similarity=0.110 Sum_probs=19.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCC
Q 038429 157 SNSLIHFYAVCGDLAMAYCVFVMIGKKD 184 (258)
Q Consensus 157 ~~~li~~~~~~g~~~~a~~~~~~m~~~~ 184 (258)
...+|+-|...|+.++|...++++..|+
T Consensus 13 ~~~ii~EYf~~~D~~Ea~~~l~eL~~p~ 40 (165)
T 2rg8_A 13 LTPIIQEYFEHGDTNEVAEMLRDLNLGE 40 (165)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCSG
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcc
Confidence 4456677777777777777777776653
No 365
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=20.67 E-value=4.9e+02 Score=23.84 Aligned_cols=118 Identities=6% Similarity=-0.121 Sum_probs=0.0
Q ss_pred HHHHHHhcCcCCcchhhhhhhcc----------cCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-ChhhHHHHHHHHH
Q 038429 128 PFVIKAAARPVQFRVGQAIHGMF----------EDDLVISNSLIHFYAVCGDLAMAYCVFVMIGKK-DVVSWNSMISGFV 196 (258)
Q Consensus 128 ~~ll~~~~~~~~~~~a~~~~~~~----------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~li~~~~ 196 (258)
..++...|+.|+.+......+.. +.+...-..+...-.+.|.-++-..+++..++. +..--..++.+++
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~~vy~~~~~~g~~~~~~~l~~~~~~~~~~~ek~~ll~aL~ 769 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLRSTIYCNAIAQGGQDQWDFAWGQLQQAQLVNEADKLRSALA 769 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTHHHHHHHHHHHSCHHHHHHHHHHHHHCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHccCCHHHHHHHHHHhC
Q ss_pred cCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHH
Q 038429 197 EGGFFEKAIELYREMEVENVKPDEVTMVVVLSACAKKRDLEFGIWVSSH 245 (258)
Q Consensus 197 ~~g~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~ 245 (258)
...+.+...++++................+.......--.+.|.+.+.+
T Consensus 770 ~~~d~~~l~~~L~~~l~~~~ir~qd~~~~~~~v~~n~~g~~~~~~f~~~ 818 (909)
T 4fke_A 770 CSNEVWLLNRYLGYTLNPDLIRKQDATSTINSIASNVIGQPLAWDFVQS 818 (909)
T ss_dssp TCCCHHHHHHHHHHTTCTTTSCGGGHHHHHHHHHHSTTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCCCchhhHHHHHHHHhcChHHHHHHHHHHHH
No 366
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=20.26 E-value=2e+02 Score=26.73 Aligned_cols=156 Identities=8% Similarity=0.011 Sum_probs=83.3
Q ss_pred ccchhhHHHHHHHHHhhccCcchhhhhhhhhhhh--ccCCCChHHHHHHhccCCC-CChh-hHH---HHHHHHhcCCChh
Q 038429 33 LTNQKQLKRIHAQMLSTDFFFDPYSASKLFTPCA--LSTFSSLEYARKMFDQIPQ-PNLY-TWN---TLIRAYSSSDEPI 105 (258)
Q Consensus 33 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~--~~~~~~~~~a~~~~~~m~~-~~~~-~~~---~li~~~~~~g~~~ 105 (258)
.++-+....++..+.... +..+...+..+++ ..| +-+.+..+.+.+.. .+.. -|. ++.-+|+..|+..
T Consensus 503 Tgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g--~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~ 577 (963)
T 4ady_A 503 TGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYG--RQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNS 577 (963)
T ss_dssp CCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTT--CGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHH
T ss_pred cCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCC--ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHH
Confidence 456666777777665432 3334444555555 445 77777666665532 2222 232 3445677888977
Q ss_pred hHHHHHHHhHhcCCCCCCcchHHHHHHHhcCcCCcchhhhhhhcc--cCchhHHHHHHHHHH--hcCCH-HHHHHHHHhc
Q 038429 106 QSFMIFLQLVYNSPYFPNEFTLPFVIKAAARPVQFRVGQAIHGMF--EDDLVISNSLIHFYA--VCGDL-AMAYCVFVMI 180 (258)
Q Consensus 106 ~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~--~~~~~~~~~li~~~~--~~g~~-~~a~~~~~~m 180 (258)
...++++.+ .... ..+..-...+--++...|+.+.+.++++.+ ..|..+-....-+++ ..|.. .++.+++..+
T Consensus 578 aIq~LL~~~-~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L 655 (963)
T 4ady_A 578 AVKRLLHVA-VSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPL 655 (963)
T ss_dssp HHHHHHHHH-HHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHh-ccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHH
Confidence 766788888 4321 122222333333455567777778888766 334444333333443 34443 5677777766
Q ss_pred CC-CChhhHHHHHHHH
Q 038429 181 GK-KDVVSWNSMISGF 195 (258)
Q Consensus 181 ~~-~~~~~~~~li~~~ 195 (258)
.. +|..+=..-+.++
T Consensus 656 ~~D~d~~Vrq~Ai~AL 671 (963)
T 4ady_A 656 TKDPVDFVRQAAMIAL 671 (963)
T ss_dssp HTCSSHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHH
Confidence 53 4444433333333
Done!