Query 038430
Match_columns 677
No_of_seqs 341 out of 3348
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 10:59:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038430.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038430hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.7E-65 3.6E-70 577.0 30.6 536 1-595 214-787 (889)
2 PLN03210 Resistant to P. syrin 100.0 6.3E-53 1.4E-57 501.2 37.0 591 12-676 265-899 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 1.6E-32 3.4E-37 280.5 7.0 226 1-231 53-285 (287)
4 PLN00113 leucine-rich repeat r 99.9 5.4E-22 1.2E-26 236.7 13.7 155 325-492 139-294 (968)
5 PLN00113 leucine-rich repeat r 99.9 8.7E-22 1.9E-26 234.9 13.3 333 302-677 139-482 (968)
6 KOG0444 Cytoskeletal regulator 99.8 1.2E-22 2.6E-27 208.5 -8.2 151 303-463 55-206 (1255)
7 KOG4194 Membrane glycoprotein 99.8 1.9E-19 4.1E-24 184.2 6.1 242 302-609 124-374 (873)
8 KOG0444 Cytoskeletal regulator 99.8 6.8E-21 1.5E-25 195.7 -4.4 250 302-618 31-285 (1255)
9 PLN03210 Resistant to P. syrin 99.8 4.5E-18 9.7E-23 203.5 16.5 274 301-617 587-910 (1153)
10 KOG4194 Membrane glycoprotein 99.7 2E-18 4.3E-23 176.8 3.3 314 301-677 76-399 (873)
11 KOG0472 Leucine-rich repeat pr 99.7 8.5E-19 1.8E-23 172.1 -7.4 300 304-677 92-465 (565)
12 KOG0472 Leucine-rich repeat pr 99.6 1.3E-17 2.7E-22 163.9 -2.1 121 304-433 184-305 (565)
13 KOG0618 Serine/threonine phosp 99.6 1.6E-16 3.4E-21 171.6 -3.9 227 353-655 240-488 (1081)
14 KOG0618 Serine/threonine phosp 99.5 1.4E-16 3.1E-21 171.9 -4.7 243 302-612 240-488 (1081)
15 PRK15370 E3 ubiquitin-protein 99.5 7.9E-14 1.7E-18 156.5 9.8 115 305-436 180-294 (754)
16 KOG0617 Ras suppressor protein 99.5 1.1E-15 2.3E-20 133.5 -4.8 186 350-620 29-219 (264)
17 KOG0617 Ras suppressor protein 99.4 2E-15 4.3E-20 131.8 -4.7 150 302-463 32-182 (264)
18 PRK15387 E3 ubiquitin-protein 99.4 1.6E-12 3.5E-17 145.2 14.9 236 302-655 221-457 (788)
19 PRK15370 E3 ubiquitin-protein 99.4 5.7E-13 1.2E-17 149.7 9.2 223 301-610 197-425 (754)
20 PRK15387 E3 ubiquitin-protein 99.4 2.2E-12 4.7E-17 144.1 13.2 251 303-677 201-452 (788)
21 KOG4237 Extracellular matrix p 99.3 2.2E-13 4.8E-18 134.2 -2.1 284 300-654 64-357 (498)
22 KOG4658 Apoptotic ATPase [Sign 99.3 6.6E-12 1.4E-16 143.3 7.3 158 304-466 546-729 (889)
23 cd00116 LRR_RI Leucine-rich re 99.2 1.7E-12 3.8E-17 134.8 -2.2 42 547-588 213-260 (319)
24 cd00116 LRR_RI Leucine-rich re 99.1 1.3E-11 2.8E-16 128.2 0.8 240 304-589 24-289 (319)
25 KOG4237 Extracellular matrix p 99.1 9.5E-12 2.1E-16 122.9 -1.9 275 308-655 51-334 (498)
26 KOG0532 Leucine-rich repeat (L 99.1 5.7E-12 1.2E-16 129.9 -3.8 189 305-610 77-270 (722)
27 COG4886 Leucine-rich repeat (L 98.7 1.2E-08 2.6E-13 109.2 4.8 122 308-436 98-220 (394)
28 PF14580 LRR_9: Leucine-rich r 98.7 1.8E-08 4E-13 92.6 5.0 128 302-438 18-153 (175)
29 KOG1259 Nischarin, modulator o 98.6 7.4E-09 1.6E-13 99.0 0.8 87 550-655 324-411 (490)
30 KOG3207 Beta-tubulin folding c 98.6 8.5E-09 1.8E-13 103.8 0.7 60 352-411 119-182 (505)
31 PF14580 LRR_9: Leucine-rich r 98.6 9.4E-09 2E-13 94.5 0.5 115 312-436 6-124 (175)
32 KOG2120 SCF ubiquitin ligase, 98.5 3.2E-09 6.9E-14 101.5 -5.5 187 378-661 186-382 (419)
33 KOG1909 Ran GTPase-activating 98.5 2.2E-08 4.7E-13 98.2 0.0 257 321-655 25-310 (382)
34 KOG1259 Nischarin, modulator o 98.5 4E-08 8.6E-13 94.1 1.5 79 353-434 283-361 (490)
35 KOG0532 Leucine-rich repeat (L 98.5 8.6E-09 1.9E-13 106.9 -3.9 131 302-441 120-250 (722)
36 COG4886 Leucine-rich repeat (L 98.4 1.4E-07 3.1E-12 100.9 3.9 171 303-492 116-287 (394)
37 KOG3207 Beta-tubulin folding c 98.3 4.2E-08 9.1E-13 98.9 -2.2 156 302-463 120-280 (505)
38 PLN03150 hypothetical protein; 98.3 6.4E-07 1.4E-11 100.7 6.5 103 327-433 419-523 (623)
39 PLN03150 hypothetical protein; 98.3 1.2E-06 2.6E-11 98.5 8.4 110 304-417 419-531 (623)
40 KOG1909 Ran GTPase-activating 98.3 1.2E-07 2.7E-12 93.1 -0.7 187 302-492 29-251 (382)
41 KOG4341 F-box protein containi 98.3 3.7E-08 8E-13 98.8 -5.0 297 303-675 138-457 (483)
42 KOG2120 SCF ubiquitin ligase, 98.2 8.8E-08 1.9E-12 91.8 -2.8 61 351-411 207-270 (419)
43 PF13855 LRR_8: Leucine rich r 98.2 1.6E-06 3.5E-11 65.3 4.4 56 355-411 2-59 (61)
44 PRK15386 type III secretion pr 98.2 3.6E-06 7.9E-11 86.9 7.8 65 351-420 49-113 (426)
45 KOG0531 Protein phosphatase 1, 98.2 1.9E-07 4.1E-12 100.2 -1.7 123 307-438 76-199 (414)
46 PRK04841 transcriptional regul 98.1 0.00012 2.6E-09 87.4 19.4 246 1-281 60-332 (903)
47 PF13855 LRR_8: Leucine rich r 98.1 5.6E-06 1.2E-10 62.3 4.8 58 326-388 1-60 (61)
48 PF12799 LRR_4: Leucine Rich r 98.0 8.8E-06 1.9E-10 56.1 4.3 41 354-395 1-41 (44)
49 KOG1859 Leucine-rich repeat pr 97.9 5E-07 1.1E-11 96.5 -5.5 116 340-464 173-289 (1096)
50 KOG0531 Protein phosphatase 1, 97.9 2.1E-06 4.5E-11 92.2 -1.5 212 324-609 70-286 (414)
51 KOG4341 F-box protein containi 97.9 1.2E-06 2.6E-11 88.1 -3.1 275 326-676 138-432 (483)
52 PF12799 LRR_4: Leucine Rich r 97.6 4.8E-05 1E-09 52.5 2.6 42 555-597 1-42 (44)
53 KOG3665 ZYG-1-like serine/thre 97.6 4.2E-05 9E-10 86.0 3.0 133 354-492 122-260 (699)
54 PRK15386 type III secretion pr 97.4 0.00022 4.8E-09 74.0 5.5 80 303-397 52-134 (426)
55 TIGR03015 pepcterm_ATPase puta 97.3 0.012 2.6E-07 59.3 17.1 147 6-153 79-242 (269)
56 KOG2982 Uncharacterized conser 97.3 0.00024 5.2E-09 68.8 3.9 60 549-608 218-287 (418)
57 COG5238 RNA1 Ran GTPase-activa 97.2 0.00018 3.9E-09 68.7 2.7 93 320-412 24-131 (388)
58 KOG4579 Leucine-rich repeat (L 97.2 5.4E-05 1.2E-09 64.8 -1.4 100 307-412 31-134 (177)
59 KOG1859 Leucine-rich repeat pr 97.1 7.5E-06 1.6E-10 87.8 -8.3 123 304-436 165-290 (1096)
60 KOG4579 Leucine-rich repeat (L 97.1 8.1E-05 1.7E-09 63.7 -0.8 89 302-396 52-141 (177)
61 COG2909 MalT ATP-dependent tra 97.0 0.024 5.2E-07 63.3 15.9 243 1-280 68-337 (894)
62 KOG3665 ZYG-1-like serine/thre 96.8 0.0007 1.5E-08 76.4 2.7 36 551-587 169-204 (699)
63 KOG2982 Uncharacterized conser 96.8 0.00042 9.2E-09 67.1 0.6 61 351-412 68-132 (418)
64 PRK00411 cdc6 cell division co 96.7 0.21 4.7E-06 53.3 20.9 252 2-271 90-375 (394)
65 KOG2739 Leucine-rich acidic nu 96.4 0.0015 3.3E-08 62.6 1.5 61 350-412 61-127 (260)
66 PF05729 NACHT: NACHT domain 96.3 0.028 6E-07 51.6 9.5 72 44-115 79-162 (166)
67 PRK06893 DNA replication initi 96.3 0.017 3.7E-07 56.5 8.3 96 48-147 93-201 (229)
68 COG5238 RNA1 Ran GTPase-activa 96.2 0.00099 2.1E-08 63.8 -0.4 188 302-492 29-252 (388)
69 KOG1644 U2-associated snRNP A' 96.2 0.0057 1.2E-07 56.3 4.4 102 327-436 43-151 (233)
70 KOG2123 Uncharacterized conser 96.0 0.00056 1.2E-08 65.7 -3.1 102 325-434 18-126 (388)
71 KOG1644 U2-associated snRNP A' 96.0 0.011 2.4E-07 54.5 5.2 103 302-411 41-150 (233)
72 PF00560 LRR_1: Leucine Rich R 95.9 0.0041 8.9E-08 35.6 1.3 21 355-375 1-21 (22)
73 KOG1947 Leucine rich repeat pr 95.9 0.0018 4E-08 71.2 -0.6 38 453-492 268-305 (482)
74 KOG2123 Uncharacterized conser 95.7 0.00066 1.4E-08 65.2 -4.0 101 302-409 18-125 (388)
75 KOG2739 Leucine-rich acidic nu 94.8 0.013 2.8E-07 56.3 1.6 84 350-436 39-127 (260)
76 PF01637 Arch_ATPase: Archaeal 94.3 0.26 5.6E-06 48.0 9.6 100 45-148 117-233 (234)
77 PF00560 LRR_1: Leucine Rich R 94.2 0.025 5.3E-07 32.4 1.2 21 378-399 1-21 (22)
78 KOG1947 Leucine rich repeat pr 94.0 0.013 2.7E-07 64.5 -0.6 141 375-589 186-332 (482)
79 PF13504 LRR_7: Leucine rich r 93.2 0.065 1.4E-06 28.4 1.6 15 355-369 2-16 (17)
80 TIGR03420 DnaA_homol_Hda DnaA 93.1 2.1 4.6E-05 41.5 13.5 99 48-150 92-202 (226)
81 PF13401 AAA_22: AAA domain; P 93.0 0.15 3.2E-06 44.7 4.7 83 1-85 41-125 (131)
82 PRK00080 ruvB Holliday junctio 92.8 3.4 7.3E-05 42.8 15.2 155 76-255 151-309 (328)
83 TIGR00635 ruvB Holliday juncti 92.4 2.3 5E-05 43.5 13.2 72 76-151 130-203 (305)
84 TIGR02928 orc1/cdc6 family rep 92.4 3.6 7.8E-05 43.3 15.0 240 2-257 79-351 (365)
85 PF13504 LRR_7: Leucine rich r 92.0 0.12 2.6E-06 27.4 1.6 17 377-394 1-17 (17)
86 KOG3864 Uncharacterized conser 91.6 0.017 3.8E-07 53.3 -3.0 62 576-655 123-188 (221)
87 TIGR00678 holB DNA polymerase 91.6 2.7 5.9E-05 39.5 11.8 90 45-144 95-186 (188)
88 PRK09087 hypothetical protein; 91.6 1.6 3.4E-05 42.5 10.2 93 49-147 90-193 (226)
89 PF13173 AAA_14: AAA domain 91.2 0.64 1.4E-05 40.6 6.5 96 10-107 14-126 (128)
90 PRK07471 DNA polymerase III su 91.1 0.97 2.1E-05 47.4 8.7 97 45-149 140-238 (365)
91 PRK13342 recombination factor 91.1 1.5 3.2E-05 47.1 10.4 103 44-150 90-197 (413)
92 KOG0473 Leucine-rich repeat pr 89.8 0.0056 1.2E-07 57.5 -8.1 86 321-412 37-122 (326)
93 PRK08727 hypothetical protein; 89.2 6.4 0.00014 38.5 12.3 96 47-146 94-201 (233)
94 PRK06645 DNA polymerase III su 88.9 3.7 8E-05 45.0 11.3 98 45-146 127-226 (507)
95 KOG0473 Leucine-rich repeat pr 88.0 0.026 5.7E-07 53.1 -5.0 91 344-436 31-122 (326)
96 PF13306 LRR_5: Leucine rich r 87.8 1.7 3.7E-05 37.7 6.7 82 321-411 7-91 (129)
97 PRK09112 DNA polymerase III su 87.8 4.5 9.7E-05 42.2 10.6 99 45-149 140-240 (351)
98 PRK05564 DNA polymerase III su 87.7 2.8 6.1E-05 43.1 9.1 95 45-147 92-188 (313)
99 smart00370 LRR Leucine-rich re 86.7 0.56 1.2E-05 27.9 2.0 19 354-372 2-20 (26)
100 smart00369 LRR_TYP Leucine-ric 86.7 0.56 1.2E-05 27.9 2.0 19 354-372 2-20 (26)
101 KOG3864 Uncharacterized conser 86.6 0.15 3.3E-06 47.2 -0.8 91 354-472 101-194 (221)
102 PTZ00112 origin recognition co 86.0 11 0.00023 43.7 12.7 150 3-153 822-986 (1164)
103 PF13306 LRR_5: Leucine rich r 86.0 2.7 5.8E-05 36.4 6.9 111 304-427 13-128 (129)
104 PRK05707 DNA polymerase III su 85.0 4.6 0.0001 41.7 8.9 96 46-149 106-203 (328)
105 PRK14086 dnaA chromosomal repl 84.1 12 0.00026 41.8 12.0 70 49-118 380-461 (617)
106 PRK14087 dnaA chromosomal repl 84.1 11 0.00024 40.8 11.8 102 47-150 207-320 (450)
107 PRK07940 DNA polymerase III su 83.4 6.7 0.00014 41.6 9.5 96 45-149 116-213 (394)
108 PRK07003 DNA polymerase III su 83.3 5.4 0.00012 45.4 9.0 100 45-148 118-220 (830)
109 TIGR02903 spore_lon_C ATP-depe 82.7 8.8 0.00019 43.4 10.6 114 35-152 281-398 (615)
110 smart00369 LRR_TYP Leucine-ric 82.1 1 2.2E-05 26.7 1.7 20 376-396 1-20 (26)
111 smart00370 LRR Leucine-rich re 82.1 1 2.2E-05 26.7 1.7 20 376-396 1-20 (26)
112 PRK06620 hypothetical protein; 82.0 7.8 0.00017 37.3 8.7 89 48-143 87-183 (214)
113 PRK14963 DNA polymerase III su 82.0 15 0.00032 40.5 11.8 98 45-146 115-214 (504)
114 PRK08084 DNA replication initi 81.8 9.2 0.0002 37.4 9.3 96 48-147 99-207 (235)
115 PRK12323 DNA polymerase III su 81.6 8.4 0.00018 43.1 9.6 101 45-149 123-225 (700)
116 PRK08903 DnaA regulatory inact 81.4 25 0.00053 34.1 12.2 102 48-153 92-203 (227)
117 PRK14959 DNA polymerase III su 81.1 13 0.00029 41.6 11.0 105 45-153 118-225 (624)
118 PRK14961 DNA polymerase III su 80.8 13 0.00028 39.1 10.6 98 45-146 118-217 (363)
119 PLN03025 replication factor C 80.6 27 0.00057 36.0 12.7 97 45-145 98-196 (319)
120 PRK12402 replication factor C 80.3 11 0.00025 38.9 10.0 98 46-147 125-224 (337)
121 TIGR02397 dnaX_nterm DNA polym 79.1 24 0.00051 36.9 12.0 102 45-150 116-219 (355)
122 PRK05642 DNA replication initi 78.8 12 0.00025 36.6 8.9 95 49-147 100-206 (234)
123 COG3903 Predicted ATPase [Gene 78.1 2.3 5E-05 44.2 3.8 172 35-213 77-257 (414)
124 PF00308 Bac_DnaA: Bacterial d 77.8 9.4 0.0002 36.9 7.8 133 6-143 42-202 (219)
125 PRK06871 DNA polymerase III su 77.7 21 0.00045 36.8 10.5 93 45-146 106-200 (325)
126 PF05621 TniB: Bacterial TniB 76.5 43 0.00093 33.8 12.0 145 2-147 100-259 (302)
127 PRK07399 DNA polymerase III su 75.9 18 0.00039 37.1 9.6 97 45-148 123-220 (314)
128 COG3899 Predicted ATPase [Gene 75.7 15 0.00032 43.4 9.9 166 37-211 144-324 (849)
129 PRK14957 DNA polymerase III su 75.7 27 0.00058 38.8 11.4 102 45-150 118-222 (546)
130 PRK08769 DNA polymerase III su 75.3 11 0.00023 38.8 7.7 95 45-149 112-208 (319)
131 PRK08691 DNA polymerase III su 74.5 20 0.00044 40.6 10.1 99 45-147 118-218 (709)
132 PRK13341 recombination factor 74.4 19 0.00041 41.5 10.2 93 45-143 108-211 (725)
133 PRK00440 rfc replication facto 72.6 95 0.0021 31.7 14.3 97 46-146 102-200 (319)
134 PRK14962 DNA polymerase III su 72.3 93 0.002 34.0 14.4 118 45-166 116-239 (472)
135 PRK14955 DNA polymerase III su 71.8 23 0.0005 37.8 9.6 99 45-147 126-226 (397)
136 PRK14951 DNA polymerase III su 71.7 29 0.00063 39.1 10.5 99 46-148 124-224 (618)
137 PRK14954 DNA polymerase III su 71.2 30 0.00065 39.1 10.6 96 45-144 126-223 (620)
138 PRK07764 DNA polymerase III su 71.0 25 0.00054 41.2 10.2 98 45-146 119-218 (824)
139 PRK06305 DNA polymerase III su 70.2 40 0.00086 36.6 11.0 101 45-149 120-223 (451)
140 PRK06090 DNA polymerase III su 70.2 32 0.0007 35.3 9.7 93 45-149 107-201 (319)
141 KOG4308 LRR-containing protein 69.5 0.07 1.5E-06 57.8 -10.1 187 305-492 89-300 (478)
142 PRK14971 DNA polymerase III su 69.5 44 0.00094 37.9 11.5 98 45-146 120-219 (614)
143 PRK06964 DNA polymerase III su 69.0 28 0.00062 36.1 9.2 92 45-148 131-224 (342)
144 PRK14960 DNA polymerase III su 68.8 30 0.00064 39.1 9.7 99 45-147 117-217 (702)
145 PRK14950 DNA polymerase III su 68.8 62 0.0013 36.5 12.6 100 45-148 119-220 (585)
146 PF14516 AAA_35: AAA-like doma 68.6 44 0.00094 34.6 10.6 54 95-156 193-246 (331)
147 PRK14956 DNA polymerase III su 67.9 36 0.00078 37.0 9.9 97 45-145 120-218 (484)
148 PRK07993 DNA polymerase III su 67.2 35 0.00077 35.3 9.5 93 45-146 107-201 (334)
149 PRK14964 DNA polymerase III su 66.8 49 0.0011 36.2 10.7 98 45-146 115-214 (491)
150 cd00561 CobA_CobO_BtuR ATP:cor 66.3 18 0.00039 32.8 6.3 53 35-87 83-139 (159)
151 PRK14949 DNA polymerase III su 66.2 46 0.001 39.0 10.8 99 45-147 118-218 (944)
152 COG2256 MGS1 ATPase related to 66.1 25 0.00055 36.7 7.9 113 29-144 86-207 (436)
153 KOG4308 LRR-containing protein 65.9 0.21 4.6E-06 54.1 -7.3 85 328-412 89-183 (478)
154 KOG0989 Replication factor C, 65.8 14 0.00031 37.0 5.8 90 49-142 132-223 (346)
155 PRK07133 DNA polymerase III su 65.7 49 0.0011 37.9 10.8 101 45-149 117-220 (725)
156 PRK04132 replication factor C 65.6 1E+02 0.0022 36.3 13.4 98 46-147 630-729 (846)
157 COG0593 DnaA ATPase involved i 65.1 17 0.00038 38.4 6.7 97 49-147 178-288 (408)
158 COG1373 Predicted ATPase (AAA+ 65.0 75 0.0016 33.9 11.7 63 46-111 94-162 (398)
159 TIGR00362 DnaA chromosomal rep 64.4 32 0.00069 36.8 8.9 93 49-145 202-306 (405)
160 smart00364 LRR_BAC Leucine-ric 64.0 4.3 9.3E-05 24.2 1.2 18 555-572 2-19 (26)
161 PRK09111 DNA polymerase III su 62.7 58 0.0013 36.7 10.7 100 45-148 131-232 (598)
162 PRK07994 DNA polymerase III su 62.2 46 0.00099 37.7 9.7 100 45-148 118-219 (647)
163 PRK05896 DNA polymerase III su 60.6 65 0.0014 36.1 10.4 101 46-150 119-222 (605)
164 PRK14970 DNA polymerase III su 60.5 45 0.00098 35.1 9.1 96 45-144 107-204 (367)
165 PRK08451 DNA polymerase III su 59.8 51 0.0011 36.5 9.4 100 45-148 116-217 (535)
166 PF13516 LRR_6: Leucine Rich r 59.5 3.6 7.8E-05 23.7 0.3 14 354-367 2-15 (24)
167 TIGR01242 26Sp45 26S proteasom 58.9 41 0.00088 35.4 8.4 94 45-143 214-328 (364)
168 PRK12422 chromosomal replicati 57.4 73 0.0016 34.5 10.1 70 48-117 204-285 (445)
169 PRK14952 DNA polymerase III su 56.5 1.2E+02 0.0026 34.1 11.7 103 45-151 117-222 (584)
170 PRK14088 dnaA chromosomal repl 56.4 1.1E+02 0.0023 33.2 11.2 93 46-142 194-298 (440)
171 COG1474 CDC6 Cdc6-related prot 56.3 2.6E+02 0.0057 29.3 14.4 115 2-116 77-203 (366)
172 PRK06647 DNA polymerase III su 55.1 1.2E+02 0.0025 34.1 11.4 99 45-147 118-218 (563)
173 smart00367 LRR_CC Leucine-rich 55.0 7.1 0.00015 23.1 1.1 14 578-591 2-15 (26)
174 PRK08485 DNA polymerase III su 54.1 1.5E+02 0.0032 28.1 10.0 104 9-114 11-137 (206)
175 PRK14958 DNA polymerase III su 53.8 74 0.0016 35.2 9.5 99 45-147 118-218 (509)
176 smart00365 LRR_SD22 Leucine-ri 53.8 10 0.00022 22.7 1.5 14 354-367 2-15 (26)
177 PRK00149 dnaA chromosomal repl 53.6 49 0.0011 36.0 8.2 117 48-168 213-348 (450)
178 KOG2543 Origin recognition com 53.5 1.1E+02 0.0023 32.0 9.7 111 1-114 59-191 (438)
179 PRK08058 DNA polymerase III su 52.8 1E+02 0.0022 31.8 10.0 70 45-114 109-180 (329)
180 PRK14948 DNA polymerase III su 51.5 1.5E+02 0.0032 33.7 11.6 100 45-148 120-221 (620)
181 PRK07132 DNA polymerase III su 51.5 45 0.00098 33.9 6.9 94 45-148 89-184 (299)
182 PF13177 DNA_pol3_delta2: DNA 50.0 48 0.001 30.2 6.3 59 45-103 101-161 (162)
183 PRK14965 DNA polymerase III su 49.1 82 0.0018 35.5 9.1 101 45-149 118-221 (576)
184 cd00009 AAA The AAA+ (ATPases 48.7 43 0.00094 28.9 5.8 44 44-87 82-131 (151)
185 cd01128 rho_factor Transcripti 48.5 14 0.00031 36.3 2.7 56 1-56 49-113 (249)
186 KOG3763 mRNA export factor TAP 48.3 8.3 0.00018 41.7 1.0 65 552-616 215-286 (585)
187 PRK14969 DNA polymerase III su 47.8 1.1E+02 0.0023 34.1 9.7 96 45-144 118-215 (527)
188 PF02463 SMC_N: RecF/RecN/SMC 46.5 18 0.00039 34.8 3.1 47 46-92 158-205 (220)
189 PRK14953 DNA polymerase III su 46.5 1.5E+02 0.0032 32.6 10.4 99 45-147 118-218 (486)
190 PRK08116 hypothetical protein; 40.3 45 0.00097 33.3 4.8 44 41-85 174-220 (268)
191 PF07693 KAP_NTPase: KAP famil 39.6 2.7E+02 0.0058 28.4 10.9 85 31-115 155-262 (325)
192 smart00368 LRR_RI Leucine rich 39.2 22 0.00048 21.5 1.5 14 354-367 2-15 (28)
193 PHA02544 44 clamp loader, smal 38.6 1.7E+02 0.0036 29.9 9.0 70 45-114 99-171 (316)
194 PRK05563 DNA polymerase III su 37.4 2.5E+02 0.0053 31.6 10.5 98 45-146 118-217 (559)
195 PRK08699 DNA polymerase III su 36.4 1.7E+02 0.0036 30.2 8.4 67 48-114 115-183 (325)
196 PRK06581 DNA polymerase III su 35.3 3.1E+02 0.0067 27.0 9.2 73 45-117 88-162 (263)
197 TIGR00708 cobA cob(I)alamin ad 35.3 1E+02 0.0022 28.5 5.9 53 34-86 84-140 (173)
198 PRK05986 cob(I)alamin adenolsy 34.0 1.1E+02 0.0023 28.8 5.9 52 35-86 103-158 (191)
199 TIGR02880 cbbX_cfxQ probable R 33.7 1.6E+02 0.0034 29.7 7.7 70 47-116 122-208 (284)
200 PRK07276 DNA polymerase III su 32.9 3E+02 0.0065 27.8 9.4 68 45-113 103-172 (290)
201 PRK07414 cob(I)yrinic acid a,c 32.2 1.2E+02 0.0025 28.2 5.7 52 35-86 103-158 (178)
202 PRK04195 replication factor C 30.8 7.5E+02 0.016 27.1 14.6 97 46-148 98-201 (482)
203 TIGR00767 rho transcription te 30.7 51 0.0011 34.8 3.6 56 1-56 201-265 (415)
204 CHL00181 cbbX CbbX; Provisiona 30.6 2.7E+02 0.0059 28.1 8.7 70 48-117 124-210 (287)
205 PF02572 CobA_CobO_BtuR: ATP:c 30.3 1E+02 0.0022 28.5 5.0 55 33-87 82-140 (172)
206 PF00004 AAA: ATPase family as 29.1 3E+02 0.0064 23.2 7.9 74 12-85 12-111 (132)
207 KOG2227 Pre-initiation complex 28.6 5E+02 0.011 28.1 10.2 107 10-116 218-338 (529)
208 PF06144 DNA_pol3_delta: DNA p 26.0 3.8E+02 0.0083 24.1 8.4 137 6-146 6-163 (172)
209 PRK03992 proteasome-activating 25.5 3.4E+02 0.0075 28.7 8.8 74 45-118 223-317 (389)
210 KOG3763 mRNA export factor TAP 24.9 22 0.00048 38.6 -0.3 81 576-676 216-307 (585)
211 TIGR01128 holA DNA polymerase 23.7 5.8E+02 0.013 25.5 10.0 113 31-147 30-151 (302)
212 cd05141 Barstar_evA4336-like B 23.4 3.3E+02 0.0072 21.3 6.2 68 3-70 3-75 (81)
213 COG2109 BtuR ATP:corrinoid ade 23.0 2.3E+02 0.005 26.5 5.8 52 35-86 110-165 (198)
214 PF05673 DUF815: Protein of un 21.6 3.7E+02 0.0081 26.4 7.3 59 30-90 92-155 (249)
215 COG3267 ExeA Type II secretory 21.5 8E+02 0.017 24.3 12.1 139 8-150 89-246 (269)
216 KOG4354 N-acetyl-gamma-glutamy 20.0 1.2E+02 0.0027 29.3 3.5 87 4-90 223-311 (340)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-65 Score=576.99 Aligned_cols=536 Identities=29% Similarity=0.409 Sum_probs=414.9
Q ss_pred CeEEecCCCCHHHHHHHHHHHhcCCCCCCc--hHHHHHHHHHHHcCCccEEEEEECCcCCCccchhhhhhhhcCCCCCcE
Q 038430 1 MWVCVSDTFEEISVANAIIEGLGESTSSLS--EFQSLMSHIHRSIEGKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSK 78 (677)
Q Consensus 1 ~WV~vs~~~~~~~i~~~i~~~l~~~~~~~~--~~~~~~~~i~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~ 78 (677)
|||+||+.|+...++++|++.++..+.... +.++.+..|.+.|++|||+|||||||+. .+|+.+..++|...+|||
T Consensus 214 iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~--~dw~~I~~~~p~~~~g~K 291 (889)
T KOG4658|consen 214 IWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEE--VDWDKIGVPFPSRENGSK 291 (889)
T ss_pred EEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEeccccc--ccHHhcCCCCCCccCCeE
Confidence 799999999999999999999988665443 3578999999999999999999999998 679999999999989999
Q ss_pred EEEEcCchHHHHh-cCCCCeEecCCCChHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHhcCCchHHHHHHHHhccCC
Q 038430 79 ILVTTRNELVARM-MGSTNIIFIEQLTEEECWSLFKRLAFFGCSFEDCERLEPIGQKIARKCKGLPIAAKVIGNLLRSKS 157 (677)
Q Consensus 79 IiiTTR~~~v~~~-~~~~~~~~v~~L~~~ea~~LF~~~af~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~ig~~L~~~~ 157 (677)
|++|||++.|+.. +++...++|++|..+|||+||++.||...... ++.+.++|++|+++|+|+|||++++|+.|+.|.
T Consensus 292 vvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~-~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~ 370 (889)
T KOG4658|consen 292 VVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGS-HPDIEELAKEVAEKCGGLPLALNVLGGLLACKK 370 (889)
T ss_pred EEEEeccHhhhhccccCCccccccccCccccHHHHHHhhccccccc-cccHHHHHHHHHHHhCChHHHHHHHHHHhcCCC
Confidence 9999999999999 88888999999999999999999998765533 345999999999999999999999999999999
Q ss_pred CHHHHHHHHhhhhhhhh----hcCCCccceeecccccCCCchhhhHHHhhhccCCCCceecHHHHHHHHHHcCCcCc-ch
Q 038430 158 TIKDWQRILDSEMWKAE----EIGKGLLTPLLLSYNDLSSNSMVKRFFSYCAVFPKDYNMYKEELISLWMAQGYLNA-EE 232 (677)
Q Consensus 158 ~~~~w~~~l~~~~~~~~----~~~~~i~~~l~~Sy~~L~~~~~~k~~fl~~a~fp~~~~i~~~~li~~wi~~g~i~~-~~ 232 (677)
+.++|+++.+...+... ...+.++.++++|||.|+. ++|.||+|||+||+|+.|.++.++.+|+||||+.+ ..
T Consensus 371 t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~--~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~ 448 (889)
T KOG4658|consen 371 TVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPE--ELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDG 448 (889)
T ss_pred cHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhH--HHHHHHHhhccCCcccccchHHHHHHHHhccCcCcccc
Confidence 99999999986544422 1246789999999999996 99999999999999999999999999999999988 33
Q ss_pred hhhHHHhHHHHHHHHHHccCccccccCCCCCeeeEEeChhHHHHHHHHhc-----cccEEEEcC-CccccccccCCCceE
Q 038430 233 YEEKEMTGEECFNILAARSFFQEFEKNDDDDIMSCKMHDIVHDFAQFVSS-----KECLWLEIN-STKESVINAFGGKVR 306 (677)
Q Consensus 233 ~~~~~~~~~~~~~~L~~~sll~~~~~~~~~~~~~~~mhdli~d~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~l~ 306 (677)
+..++++|.+|+.+|++++++...... ++..+|+|||++|+||.+++. .++.+.... +....+....+..+|
T Consensus 449 ~~~~~d~G~~~i~~LV~~~Ll~~~~~~--~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~r 526 (889)
T KOG4658|consen 449 GETAEDVGYDYIEELVRASLLIEERDE--GRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVR 526 (889)
T ss_pred ccchhcchHHHHHHHHHHHHHhhcccc--cceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhhee
Confidence 667899999999999999999876654 667789999999999999999 555444432 233333334467899
Q ss_pred EEEEEecCCCcccccccCCCcccEEEeCCCCCCCC-CCccCCcc-cCCCCCcCEEEecCcc-ccccchhhccCCCcCEEE
Q 038430 307 HLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNS-SLDKIPEN-VGKLMHLKYLNLSELH-IERLPKTLCELYNLQKLD 383 (677)
Q Consensus 307 ~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~-~~~~lp~~-~~~l~~L~~L~Ls~~~-i~~lp~~i~~l~~L~~L~ 383 (677)
++++.++.+..++.... ++.|++|.+.. +. .+..++.. |..|+.|++|||++|. +..+|.+|++|.+|++|+
T Consensus 527 r~s~~~~~~~~~~~~~~-~~~L~tLll~~----n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~ 601 (889)
T KOG4658|consen 527 RMSLMNNKIEHIAGSSE-NPKLRTLLLQR----NSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD 601 (889)
T ss_pred EEEEeccchhhccCCCC-CCccceEEEee----cchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc
Confidence 99999998877775443 44799988886 22 25555543 6789999999999877 778999999999999999
Q ss_pred ecCCCCccccCcccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccccC
Q 038430 384 IRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIEG 463 (677)
Q Consensus 384 L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~ 463 (677)
++++. +..+|.++++|++|.+|++..+.....+|..+..|++|++|.+....... ....+.++.++.+|+.+.+..
T Consensus 602 L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~---~~~~l~el~~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 602 LSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSN---DKLLLKELENLEHLENLSITI 677 (889)
T ss_pred ccCCC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecccccc---chhhHHhhhcccchhhheeec
Confidence 99887 88999999999999999999887766666656668899998887665111 145566666666666655543
Q ss_pred ccC-----CC----------------ChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcc
Q 038430 464 LSN-----VS----------------HLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYK 522 (677)
Q Consensus 464 ~~~-----~~----------------~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (677)
.+. +. .........+..+.+|+.|.+..+..-.....|.
T Consensus 678 ~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~-------------------- 737 (889)
T KOG4658|consen 678 SSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWE-------------------- 737 (889)
T ss_pred chhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccc--------------------
Confidence 221 00 0001122334556777777777662111000000
Q ss_pred cccCCccccchhhhhhcchhhHHHHhhhcCCCCCCcEEEEecCCCCCCChhHhhccCCCeEEEeCCCCCCcCC
Q 038430 523 EEKGGKVVDGEYEERRRKNEKDEQLLEALQPPLNVEKLWILFNGGNILPKWLTSLTNLSDLKLVFCENCEQLP 595 (677)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~~~~l~ 595 (677)
....... .++++.++.+.++.....+.|....++|+.|.+..|..++.+.
T Consensus 738 --------------------~~~~~~~---~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i 787 (889)
T KOG4658|consen 738 --------------------ESLIVLL---CFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDII 787 (889)
T ss_pred --------------------cccchhh---hHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCC
Confidence 0000000 1345555555666666677777788888888888887665543
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=6.3e-53 Score=501.16 Aligned_cols=591 Identities=18% Similarity=0.205 Sum_probs=391.3
Q ss_pred HHHHHHHHHHhcCCCC-CCchHHHHHHHHHHHcCCccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEEEcCchHHHH
Q 038430 12 ISVANAIIEGLGESTS-SLSEFQSLMSHIHRSIEGKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTTRNELVAR 90 (677)
Q Consensus 12 ~~i~~~i~~~l~~~~~-~~~~~~~~~~~i~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiTTR~~~v~~ 90 (677)
..+++++++++..... ..... ..++++|++||+||||||||+. ..|+.+.....+.++||+||||||+++++.
T Consensus 265 ~~l~~~~l~~il~~~~~~~~~~----~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~ 338 (1153)
T PLN03210 265 LHLQRAFLSEILDKKDIKIYHL----GAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRIIVITKDKHFLR 338 (1153)
T ss_pred HHHHHHHHHHHhCCCCcccCCH----HHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEEEEeCcHHHHH
Confidence 3466677766654321 11122 4578889999999999999986 788888887777889999999999999999
Q ss_pred hcCCCCeEecCCCChHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHhcCCchHHHHHHHHhccCCCHHHHHHHHhhhh
Q 038430 91 MMGSTNIIFIEQLTEEECWSLFKRLAFFGCSFEDCERLEPIGQKIARKCKGLPIAAKVIGNLLRSKSTIKDWQRILDSEM 170 (677)
Q Consensus 91 ~~~~~~~~~v~~L~~~ea~~LF~~~af~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~ig~~L~~~~~~~~w~~~l~~~~ 170 (677)
.++++.+|+|+.|+++|||+||+++||+...+ ++++.+++++|+++|+|+||||+++|++|+++ +..+|+.++++..
T Consensus 339 ~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~--~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~W~~~l~~L~ 415 (1153)
T PLN03210 339 AHGIDHIYEVCLPSNELALEMFCRSAFKKNSP--PDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKEDWMDMLPRLR 415 (1153)
T ss_pred hcCCCeEEEecCCCHHHHHHHHHHHhcCCCCC--cHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 88888899999999999999999999987554 36789999999999999999999999999987 5899999998633
Q ss_pred hhhhhcCCCccceeecccccCCCchhhhHHHhhhccCCCCceecHHHHHHHHHHcCCcCcchhhhHHHhHHHHHHHHHHc
Q 038430 171 WKAEEIGKGLLTPLLLSYNDLSSNSMVKRFFSYCAVFPKDYNMYKEELISLWMAQGYLNAEEYEEKEMTGEECFNILAAR 250 (677)
Q Consensus 171 ~~~~~~~~~i~~~l~~Sy~~L~~~~~~k~~fl~~a~fp~~~~i~~~~li~~wi~~g~i~~~~~~~~~~~~~~~~~~L~~~ 250 (677)
. ..+.++..+|++||+.|+.+ ..|.||+++|+|+.+..+ +.+..|.+.+.+.. ...++.|+++
T Consensus 416 ~---~~~~~I~~~L~~SYd~L~~~-~~k~~Fl~ia~ff~~~~~---~~v~~~l~~~~~~~----------~~~l~~L~~k 478 (1153)
T PLN03210 416 N---GLDGKIEKTLRVSYDGLNNK-KDKAIFRHIACLFNGEKV---NDIKLLLANSDLDV----------NIGLKNLVDK 478 (1153)
T ss_pred h---CccHHHHHHHHHhhhccCcc-chhhhhheehhhcCCCCH---HHHHHHHHhcCCCc----------hhChHHHHhc
Confidence 2 22457999999999999873 589999999999988654 33556666554321 2238899999
Q ss_pred cCccccccCCCCCeeeEEeChhHHHHHHHHhcccc--------EEEEcCCccccccccCCCceEEEEEEecCCCcc---c
Q 038430 251 SFFQEFEKNDDDDIMSCKMHDIVHDFAQFVSSKEC--------LWLEINSTKESVINAFGGKVRHLGLKFKGGASF---P 319 (677)
Q Consensus 251 sll~~~~~~~~~~~~~~~mhdli~d~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~---p 319 (677)
++++... + .++|||++++|++.+++++. +|...+.......+....+++.+.+....+..+ +
T Consensus 479 sLi~~~~----~---~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~ 551 (1153)
T PLN03210 479 SLIHVRE----D---IVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHE 551 (1153)
T ss_pred CCEEEcC----C---eEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecH
Confidence 9997643 1 48999999999999987653 221110000011122345566666655444332 2
Q ss_pred ccccCCCcccEEEeCCCC--------------------------CCCCCCccCCcccCCCCCcCEEEecCccccccchhh
Q 038430 320 MSIHGLNRLRTLLIDDES--------------------------PPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTL 373 (677)
Q Consensus 320 ~~~~~l~~L~~L~l~~~~--------------------------l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i 373 (677)
.+|.+|++|+.|.+..+. +.+..+..+|..+ .+.+|+.|+++++.+..+|.++
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~ 630 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGV 630 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccccccccc
Confidence 456667777777664321 0022344455544 3566777777777777777667
Q ss_pred ccCCCcCEEEecCCCCccccCcccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccC
Q 038430 374 CELYNLQKLDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNF 453 (677)
Q Consensus 374 ~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l 453 (677)
..+++|+.|+|++|..+..+|. ++.+++|+.|++++|..+..+|..++++++|+.|++.++.... .++.-.++
T Consensus 631 ~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~------~Lp~~i~l 703 (1153)
T PLN03210 631 HSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLE------ILPTGINL 703 (1153)
T ss_pred ccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcC------ccCCcCCC
Confidence 7777777777777666666665 6667777777777776677777777777777777776654332 11111145
Q ss_pred CcCCcccccCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcc-cccCCccccc
Q 038430 454 QLIRKCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYK-EEKGGKVVDG 532 (677)
Q Consensus 454 ~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 532 (677)
++|+.|.++++..+..++. ...+|+.|+++.+.... -|... ...........+.. +..++
T Consensus 704 ~sL~~L~Lsgc~~L~~~p~-------~~~nL~~L~L~~n~i~~-lP~~~------~l~~L~~L~l~~~~~~~l~~----- 764 (1153)
T PLN03210 704 KSLYRLNLSGCSRLKSFPD-------ISTNISWLDLDETAIEE-FPSNL------RLENLDELILCEMKSEKLWE----- 764 (1153)
T ss_pred CCCCEEeCCCCCCcccccc-------ccCCcCeeecCCCcccc-ccccc------cccccccccccccchhhccc-----
Confidence 6666666666654433221 12456666666552111 00000 00000000000000 00000
Q ss_pred hhhhhhcchhhHHHHhhhcCCCCCCcEEEEecCCC-CCCChhHhhccCCCeEEEeCCCCCCcCCCCCCcc-cceeecccc
Q 038430 533 EYEERRRKNEKDEQLLEALQPPLNVEKLWILFNGG-NILPKWLTSLTNLSDLKLVFCENCEQLPPLGKLP-LEKLELCHL 610 (677)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~lp~~~~~l~~L~~L~l~~c~~~~~l~~l~~l~-L~~L~l~~~ 610 (677)
............+++|+.|+|++|.. ..+|.+++++++|+.|+|++|..++.+|....++ |+.|++++|
T Consensus 765 ---------~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c 835 (1153)
T PLN03210 765 ---------RVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGC 835 (1153)
T ss_pred ---------cccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCC
Confidence 00000000112357899999999864 4699999999999999999999999999866889 999999999
Q ss_pred ccceEeCCcccc--CCCCCCCCCCCCCCCcccCCCccceeeeccccc-CccccccCCccccCCCccccc
Q 038430 611 KSVKRVGNEFLE--IEESEDDPSSSSSSSSVTAFPKVKSLEIKELEE-GNYRITRKENISIIPRLSSLR 676 (677)
Q Consensus 611 ~~l~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~p~L~~L~ 676 (677)
..++.++..... .-...++.++ ..|.+...+++|+.|.+.+|++ ..++.. .. .+++|+.|+
T Consensus 836 ~~L~~~p~~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~--~~--~L~~L~~L~ 899 (1153)
T PLN03210 836 SRLRTFPDISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLN--IS--KLKHLETVD 899 (1153)
T ss_pred CccccccccccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcc--cc--cccCCCeee
Confidence 988776532110 0001112222 3455677899999999999998 777654 22 566666554
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.97 E-value=1.6e-32 Score=280.53 Aligned_cols=226 Identities=35% Similarity=0.585 Sum_probs=179.7
Q ss_pred CeEEecCCCCHHHHHHHHHHHhcCCCC---CCchHHHHHHHHHHHcCCccEEEEEECCcCCCccchhhhhhhhcCCCCCc
Q 038430 1 MWVCVSDTFEEISVANAIIEGLGESTS---SLSEFQSLMSHIHRSIEGKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGS 77 (677)
Q Consensus 1 ~WV~vs~~~~~~~i~~~i~~~l~~~~~---~~~~~~~~~~~i~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS 77 (677)
+||++++..+..+++++|+++++.... ...+.++....+++.|+++++||||||||+. ..|+.+...++....||
T Consensus 53 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~ 130 (287)
T PF00931_consen 53 IWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDE--EDLEELREPLPSFSSGS 130 (287)
T ss_dssp EEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SH--HHH-------HCHHSS-
T ss_pred cccccccccccccccccccccccccccccccccccccccccchhhhccccceeeeeeeccc--ccccccccccccccccc
Confidence 599999999999999999999998854 3467888999999999999999999999987 68888888888877899
Q ss_pred EEEEEcCchHHHHhcCC-CCeEecCCCChHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHhcCCchHHHHHHHHhccC
Q 038430 78 KILVTTRNELVARMMGS-TNIIFIEQLTEEECWSLFKRLAFFGCSFEDCERLEPIGQKIARKCKGLPIAAKVIGNLLRSK 156 (677)
Q Consensus 78 ~IiiTTR~~~v~~~~~~-~~~~~v~~L~~~ea~~LF~~~af~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~ig~~L~~~ 156 (677)
+||||||+..++..++. ...|+|++|+.+||++||++.++... ....+...+.+++|++.|+|+||||+++|++|+.+
T Consensus 131 kilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~ 209 (287)
T PF00931_consen 131 KILVTTRDRSVAGSLGGTDKVIELEPLSEEEALELFKKRAGRKE-SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSK 209 (287)
T ss_dssp EEEEEESCGGGGTTHHSCEEEEECSS--HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccc
Confidence 99999999998887654 67899999999999999999998665 22235567789999999999999999999999766
Q ss_pred CCHHHHHHHHhhhhhhhhh---cCCCccceeecccccCCCchhhhHHHhhhccCCCCceecHHHHHHHHHHcCCcCcc
Q 038430 157 STIKDWQRILDSEMWKAEE---IGKGLLTPLLLSYNDLSSNSMVKRFFSYCAVFPKDYNMYKEELISLWMAQGYLNAE 231 (677)
Q Consensus 157 ~~~~~w~~~l~~~~~~~~~---~~~~i~~~l~~Sy~~L~~~~~~k~~fl~~a~fp~~~~i~~~~li~~wi~~g~i~~~ 231 (677)
.+..+|+.+++........ ....+..++.+||+.|++ ++|.||++||+||+++.++++.++.+|+++|+++..
T Consensus 210 ~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~--~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 210 STVDEWEEALEELENSLRESRDYDRSVFSALELSYDSLPD--ELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HSSSSHHHHHHHHHHCHTCSSGSCHHHHHHHHHHHHSSHT--CCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred ccccccccccccccccccccccccccccccceechhcCCc--cHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 5688999998764433321 235688899999999999 899999999999999999999999999999998654
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.87 E-value=5.4e-22 Score=236.68 Aligned_cols=155 Identities=21% Similarity=0.265 Sum_probs=76.6
Q ss_pred CCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCcccc-ccchhhccCCCcCEEEecCCCCccccCccccccccc
Q 038430 325 LNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIE-RLPKTLCELYNLQKLDIRGCRNLRELPTGIGKLKNM 403 (677)
Q Consensus 325 l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L 403 (677)
+++|++|++++ +.....+|..++.+++|++|++++|.+. .+|..++++++|++|++++|.....+|..++++++|
T Consensus 139 l~~L~~L~Ls~----n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 214 (968)
T PLN00113 139 IPNLETLDLSN----NMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSL 214 (968)
T ss_pred cCCCCEEECcC----CcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCc
Confidence 44444444443 2222344555555555555555555544 445555555555555555555444555555555555
Q ss_pred ceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccccCccCCCChhHHHHhhccCCcc
Q 038430 404 RSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIEGLSNVSHLDEAERLELKNMEN 483 (677)
Q Consensus 404 ~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~ 483 (677)
++|++++|...+.+|..++++++|++|++.++... ...+..+.++++|+.|.+..+.. ....+..+.++++
T Consensus 215 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-----~~~p~~l~~l~~L~~L~L~~n~l----~~~~p~~l~~l~~ 285 (968)
T PLN00113 215 KWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLT-----GPIPSSLGNLKNLQYLFLYQNKL----SGPIPPSIFSLQK 285 (968)
T ss_pred cEEECcCCccCCcCChhHhcCCCCCEEECcCceec-----cccChhHhCCCCCCEEECcCCee----eccCchhHhhccC
Confidence 55555555444455555555555555555544433 22333455555555555544221 1111223344555
Q ss_pred cCceEEEee
Q 038430 484 LLHLYLWFE 492 (677)
Q Consensus 484 L~~L~l~~~ 492 (677)
|+.|++++|
T Consensus 286 L~~L~Ls~n 294 (968)
T PLN00113 286 LISLDLSDN 294 (968)
T ss_pred cCEEECcCC
Confidence 555555544
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.86 E-value=8.7e-22 Score=234.92 Aligned_cols=333 Identities=18% Similarity=0.139 Sum_probs=216.5
Q ss_pred CCceEEEEEEecCCC-cccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCcccc-ccchhhccCCCc
Q 038430 302 GGKVRHLGLKFKGGA-SFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIE-RLPKTLCELYNL 379 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~-~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~-~lp~~i~~l~~L 379 (677)
...++.|++++|.+. .+|..+..+++|++|++++ +.....+|..++++++|++|++++|.+. .+|..++++++|
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~----n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 214 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGG----NVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSL 214 (968)
T ss_pred cCCCCEEECcCCcccccCChHHhcCCCCCEEECcc----CcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCc
Confidence 567888999888875 5677888899999999986 4444567888888999999999998876 678888899999
Q ss_pred CEEEecCCCCccccCcccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcc
Q 038430 380 QKLDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKC 459 (677)
Q Consensus 380 ~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L 459 (677)
++|++++|.....+|..++++++|++|++++|...+.+|..++++++|++|++.++... ...+..+.++.+|+.|
T Consensus 215 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-----~~~p~~l~~l~~L~~L 289 (968)
T PLN00113 215 KWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLS-----GPIPPSIFSLQKLISL 289 (968)
T ss_pred cEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeee-----ccCchhHhhccCcCEE
Confidence 99999988866688888889999999999988766678888888889998888877654 2345567777888888
Q ss_pred cccCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhc
Q 038430 460 GIEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRR 539 (677)
Q Consensus 460 ~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (677)
+++++.. ....+..+..+++|+.|++++|......|.+... ......... .
T Consensus 290 ~Ls~n~l----~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-------------l~~L~~L~L-----------~- 340 (968)
T PLN00113 290 DLSDNSL----SGEIPELVIQLQNLEILHLFSNNFTGKIPVALTS-------------LPRLQVLQL-----------W- 340 (968)
T ss_pred ECcCCee----ccCCChhHcCCCCCcEEECCCCccCCcCChhHhc-------------CCCCCEEEC-----------c-
Confidence 8876432 2223334567788888888776222111100000 000000000 0
Q ss_pred chhhHHHHhhhcCCCCCCcEEEEecCCCC-CCChhHhhccCCCeEEEeCCCCCCcCCC-CCCcc-cceeeccccccceEe
Q 038430 540 KNEKDEQLLEALQPPLNVEKLWILFNGGN-ILPKWLTSLTNLSDLKLVFCENCEQLPP-LGKLP-LEKLELCHLKSVKRV 616 (677)
Q Consensus 540 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~lp~~~~~l~~L~~L~l~~c~~~~~l~~-l~~l~-L~~L~l~~~~~l~~i 616 (677)
.+.....++..+..+++|+.|++++|.+. .+|.++..+++|+.|++.+|.....+|. ++.++ |+.|++.+|.--..+
T Consensus 341 ~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~ 420 (968)
T PLN00113 341 SNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGEL 420 (968)
T ss_pred CCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeEC
Confidence 00111123334555677777777777665 4677777777777777777755555554 67778 888888875432233
Q ss_pred CCcccc-----CCCCCCCCCCCCCCCcccCCCccceeeeccccc-CccccccCCccccCCCcccccC
Q 038430 617 GNEFLE-----IEESEDDPSSSSSSSSVTAFPKVKSLEIKELEE-GNYRITRKENISIIPRLSSLRI 677 (677)
Q Consensus 617 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~p~L~~L~i 677 (677)
+..+.. .-...++.++|..+.....+++|+.|++++|.. ..++.. - ..++|++|++
T Consensus 421 p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~--~---~~~~L~~L~l 482 (968)
T PLN00113 421 PSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDS--F---GSKRLENLDL 482 (968)
T ss_pred ChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcc--c---ccccceEEEC
Confidence 222211 111224455666665556677777777777765 444322 1 3466666654
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.81 E-value=1.2e-22 Score=208.54 Aligned_cols=151 Identities=23% Similarity=0.283 Sum_probs=91.4
Q ss_pred CceEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcCEE
Q 038430 303 GKVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKL 382 (677)
Q Consensus 303 ~~l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L 382 (677)
.++.+|++.+|.+..+...+..++.||.+.+.+|.+.++ .+|..+.+|..|..||||+|+++..|..+..-.++-+|
T Consensus 55 qkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKns---GiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVL 131 (1255)
T KOG0444|consen 55 QKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNS---GIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVL 131 (1255)
T ss_pred hhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccC---CCCchhcccccceeeecchhhhhhcchhhhhhcCcEEE
Confidence 456667777776666666666666677766665433332 34555666666666666666666666666666666666
Q ss_pred EecCCCCccccCcc-cccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccc
Q 038430 383 DIRGCRNLRELPTG-IGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGI 461 (677)
Q Consensus 383 ~L~~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i 461 (677)
+|++|. +..+|.. +-+|+-|-.|++++| .+..+|+.+..|..|++|.++++... ...+..|..|+.|..|.+
T Consensus 132 NLS~N~-IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~LqtL~Ls~NPL~-----hfQLrQLPsmtsL~vLhm 204 (1255)
T KOG0444|consen 132 NLSYNN-IETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLSMLQTLKLSNNPLN-----HFQLRQLPSMTSLSVLHM 204 (1255)
T ss_pred EcccCc-cccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHhhhhhhhcCCChhh-----HHHHhcCccchhhhhhhc
Confidence 666665 6666653 445666666666666 46666666666666666666655544 334444555555554444
Q ss_pred cC
Q 038430 462 EG 463 (677)
Q Consensus 462 ~~ 463 (677)
++
T Consensus 205 s~ 206 (1255)
T KOG0444|consen 205 SN 206 (1255)
T ss_pred cc
Confidence 43
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.77 E-value=1.9e-19 Score=184.17 Aligned_cols=242 Identities=20% Similarity=0.254 Sum_probs=158.8
Q ss_pred CCceEEEEEEecCCCccc-ccccCCCcccEEEeCCCCCCCCCCccCCc-ccCCCCCcCEEEecCccccccc-hhhccCCC
Q 038430 302 GGKVRHLGLKFKGGASFP-MSIHGLNRLRTLLIDDESPPNSSLDKIPE-NVGKLMHLKYLNLSELHIERLP-KTLCELYN 378 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~~~p-~~~~~l~~L~~L~l~~~~l~~~~~~~lp~-~~~~l~~L~~L~Ls~~~i~~lp-~~i~~l~~ 378 (677)
.++++.|.+.+|.+.++. +.+..++-||+|+|+. +.+..+|. ++..-.++++|+|++|.|+.+- ..|.++.+
T Consensus 124 sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSr-----N~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lns 198 (873)
T KOG4194|consen 124 SGHLEKLDLRHNLISSVTSEELSALPALRSLDLSR-----NLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNS 198 (873)
T ss_pred ccceeEEeeeccccccccHHHHHhHhhhhhhhhhh-----chhhcccCCCCCCCCCceEEeeccccccccccccccccch
Confidence 456777777777776664 5666677778887774 44555552 3455568888888888888663 34778888
Q ss_pred cCEEEecCCCCccccCc-ccccccccceeecCccCCCccc-CCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcC
Q 038430 379 LQKLDIRGCRNLRELPT-GIGKLKNMRSLLNGLTCSLKYM-PIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLI 456 (677)
Q Consensus 379 L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~-p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L 456 (677)
|.+|.|+.|+ +..+|. .|.+|++|+.|++..| .++.+ -..|..|.+|+.|.+..+++.. ..-..+-.+.++
T Consensus 199 L~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN-~irive~ltFqgL~Sl~nlklqrN~I~k-----L~DG~Fy~l~km 271 (873)
T KOG4194|consen 199 LLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRN-RIRIVEGLTFQGLPSLQNLKLQRNDISK-----LDDGAFYGLEKM 271 (873)
T ss_pred heeeecccCc-ccccCHHHhhhcchhhhhhcccc-ceeeehhhhhcCchhhhhhhhhhcCccc-----ccCcceeeeccc
Confidence 8888888888 777776 4566888888888888 45544 3457788888888887776652 223344456666
Q ss_pred CcccccCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhh
Q 038430 457 RKCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEE 536 (677)
Q Consensus 457 ~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (677)
+.|++.. +.+.......+.++..|+.|++++|-..+
T Consensus 272 e~l~L~~----N~l~~vn~g~lfgLt~L~~L~lS~NaI~r---------------------------------------- 307 (873)
T KOG4194|consen 272 EHLNLET----NRLQAVNEGWLFGLTSLEQLDLSYNAIQR---------------------------------------- 307 (873)
T ss_pred ceeeccc----chhhhhhcccccccchhhhhccchhhhhe----------------------------------------
Confidence 7777765 44555556677888889999998872211
Q ss_pred hhcchhhHHHHhhhcCCCCCCcEEEEecCCCCCCChh-HhhccCCCeEEEeCCCCCCcCCC--CCCcc-cceeeccc
Q 038430 537 RRRKNEKDEQLLEALQPPLNVEKLWILFNGGNILPKW-LTSLTNLSDLKLVFCENCEQLPP--LGKLP-LEKLELCH 609 (677)
Q Consensus 537 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~c~~~~~l~~--l~~l~-L~~L~l~~ 609 (677)
.-.+++.-.++|+.|+|+.|.+.++|+. +..|+.|+.|.|++| .+..+.. +..+. |++|+|++
T Consensus 308 ---------ih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~N-si~~l~e~af~~lssL~~LdLr~ 374 (873)
T KOG4194|consen 308 ---------IHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHN-SIDHLAEGAFVGLSSLHKLDLRS 374 (873)
T ss_pred ---------eecchhhhcccceeEeccccccccCChhHHHHHHHhhhhccccc-chHHHHhhHHHHhhhhhhhcCcC
Confidence 1234455567788888888887777543 445556666666555 3333332 33344 44444443
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.77 E-value=6.8e-21 Score=195.73 Aligned_cols=250 Identities=20% Similarity=0.240 Sum_probs=193.1
Q ss_pred CCceEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCcccc--ccchhhccCCCc
Q 038430 302 GGKVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIE--RLPKTLCELYNL 379 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~--~lp~~i~~l~~L 379 (677)
+.++++|.+....+..+|..+..+.+|..|.+.+ +.+.++...+..++.||.+.++.|+++ .+|+.|-.+..|
T Consensus 31 Mt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~H-----N~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dL 105 (1255)
T KOG0444|consen 31 MTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAH-----NQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDL 105 (1255)
T ss_pred hhheeEEEechhhhhhChHHHHHHhhhhhhhhhh-----hhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccc
Confidence 4567888888888888998888889999988884 455666667888999999999999987 689999999999
Q ss_pred CEEEecCCCCccccCcccccccccceeecCccCCCcccCCc-CCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCc
Q 038430 380 QKLDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIG-ISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRK 458 (677)
Q Consensus 380 ~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~ 458 (677)
.+|||++|. +.+.|..+..-+++-.|++++| .+..+|.. +-+|+-|-.|+++++.... .++..+.|.+|++
T Consensus 106 t~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N-~IetIPn~lfinLtDLLfLDLS~NrLe~------LPPQ~RRL~~Lqt 177 (1255)
T KOG0444|consen 106 TILDLSHNQ-LREVPTNLEYAKNSIVLNLSYN-NIETIPNSLFINLTDLLFLDLSNNRLEM------LPPQIRRLSMLQT 177 (1255)
T ss_pred eeeecchhh-hhhcchhhhhhcCcEEEEcccC-ccccCCchHHHhhHhHhhhccccchhhh------cCHHHHHHhhhhh
Confidence 999999998 9999999999999999999999 68888866 5688999999999887654 6677888888999
Q ss_pred ccccCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhh
Q 038430 459 CGIEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERR 538 (677)
Q Consensus 459 L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (677)
|.+++ +.+..+....+..|..|+.|.+++.
T Consensus 178 L~Ls~----NPL~hfQLrQLPsmtsL~vLhms~T---------------------------------------------- 207 (1255)
T KOG0444|consen 178 LKLSN----NPLNHFQLRQLPSMTSLSVLHMSNT---------------------------------------------- 207 (1255)
T ss_pred hhcCC----ChhhHHHHhcCccchhhhhhhcccc----------------------------------------------
Confidence 99887 4455555566777788888888765
Q ss_pred cchhhHHHHhhhcCCCCCCcEEEEecCCCCCCChhHhhccCCCeEEEeCCCCCCcCCC-CCCcc-cceeeccccccceEe
Q 038430 539 RKNEKDEQLLEALQPPLNVEKLWILFNGGNILPKWLTSLTNLSDLKLVFCENCEQLPP-LGKLP-LEKLELCHLKSVKRV 616 (677)
Q Consensus 539 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~~~~l~~-l~~l~-L~~L~l~~~~~l~~i 616 (677)
+.....++.++..+.||..++++.|.+..+|..+..+++|+.|+|++| .++.+.. .+.-. |+.|+++. ++|+.+
T Consensus 208 --qRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N-~iteL~~~~~~W~~lEtLNlSr-NQLt~L 283 (1255)
T KOG0444|consen 208 --QRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGN-KITELNMTEGEWENLETLNLSR-NQLTVL 283 (1255)
T ss_pred --cchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcC-ceeeeeccHHHHhhhhhhcccc-chhccc
Confidence 223344555666667777888888877777877778888888888777 4444432 22333 66666665 555555
Q ss_pred CC
Q 038430 617 GN 618 (677)
Q Consensus 617 ~~ 618 (677)
+.
T Consensus 284 P~ 285 (1255)
T KOG0444|consen 284 PD 285 (1255)
T ss_pred hH
Confidence 43
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.76 E-value=4.5e-18 Score=203.48 Aligned_cols=274 Identities=22% Similarity=0.283 Sum_probs=166.6
Q ss_pred CCCceEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCcc-ccccchhhccCCCc
Q 038430 301 FGGKVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELH-IERLPKTLCELYNL 379 (677)
Q Consensus 301 ~~~~l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~-i~~lp~~i~~l~~L 379 (677)
++.+++.|.+.++.+..+|..+ ...+|+.|++.+ +.+..+|..+..+++|++|+|+++. ++.+| .++.+++|
T Consensus 587 lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~-----s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~L 659 (1153)
T PLN03210 587 LPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQG-----SKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNL 659 (1153)
T ss_pred cCcccEEEEecCCCCCCCCCcC-CccCCcEEECcC-----ccccccccccccCCCCCEEECCCCCCcCcCC-ccccCCcc
Confidence 3556777777777777777555 356777777763 3455566666666677777776654 44554 36666677
Q ss_pred CEEEecCCCCccccCcccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCC---------------------C
Q 038430 380 QKLDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGG---------------------G 438 (677)
Q Consensus 380 ~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~---------------------~ 438 (677)
++|++++|..+..+|..++++++|+.|++++|..+..+|..+ ++++|+.|++.++.. .
T Consensus 660 e~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~ 738 (1153)
T PLN03210 660 ETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIE 738 (1153)
T ss_pred cEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccc
Confidence 777777666666666666666677777776666666666544 455555555544321 1
Q ss_pred cCCCCcccccccc-------------------------cCCcCCcccccCccCCCChhHHHHhhccCCcccCceEEEeec
Q 038430 439 VDGGSTCRLECLK-------------------------NFQLIRKCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFEV 493 (677)
Q Consensus 439 ~~~~~~~~~~~L~-------------------------~l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 493 (677)
..+.. ..+..|. ...+|+.|.++++.....+ +..+.++++|+.|++++|.
T Consensus 739 ~lP~~-~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~l----P~si~~L~~L~~L~Ls~C~ 813 (1153)
T PLN03210 739 EFPSN-LRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVEL----PSSIQNLHKLEHLEIENCI 813 (1153)
T ss_pred ccccc-ccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCcccc----ChhhhCCCCCCEEECCCCC
Confidence 11000 0000000 0124555666655433333 3346788999999998772
Q ss_pred CCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcchhhHHHHhhhc-CCCCCCcEEEEecCCCCCCCh
Q 038430 494 VDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKNEKDEQLLEAL-QPPLNVEKLWILFNGGNILPK 572 (677)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~lp~ 572 (677)
.....|... ........ .++. .. .+..+ ..+++|+.|+|++|.+..+|.
T Consensus 814 ~L~~LP~~~--------------~L~sL~~L----~Ls~-------c~-----~L~~~p~~~~nL~~L~Ls~n~i~~iP~ 863 (1153)
T PLN03210 814 NLETLPTGI--------------NLESLESL----DLSG-------CS-----RLRTFPDISTNISDLNLSRTGIEEVPW 863 (1153)
T ss_pred CcCeeCCCC--------------CccccCEE----ECCC-------CC-----ccccccccccccCEeECCCCCCccChH
Confidence 211111000 00000000 0000 00 00111 124689999999999999999
Q ss_pred hHhhccCCCeEEEeCCCCCCcCCC-CCCcc-cceeeccccccceEeC
Q 038430 573 WLTSLTNLSDLKLVFCENCEQLPP-LGKLP-LEKLELCHLKSVKRVG 617 (677)
Q Consensus 573 ~~~~l~~L~~L~l~~c~~~~~l~~-l~~l~-L~~L~l~~~~~l~~i~ 617 (677)
++..+++|+.|+|.+|..++.+|. ...++ |+.|++++|.+|+.+.
T Consensus 864 si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 864 WIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred HHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccccc
Confidence 999999999999999999998886 67889 9999999999998664
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.72 E-value=2e-18 Score=176.84 Aligned_cols=314 Identities=20% Similarity=0.219 Sum_probs=196.7
Q ss_pred CCCceEEEEEEecCCCccc-ccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccc-hhhccCCC
Q 038430 301 FGGKVRHLGLKFKGGASFP-MSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLP-KTLCELYN 378 (677)
Q Consensus 301 ~~~~l~~L~l~~~~~~~~p-~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp-~~i~~l~~ 378 (677)
++...+.|++++|.+..+. ..|.++++|+.+++. .+.+..+|...+-..||+.|+|.+|.|+++. +.++.++.
T Consensus 76 lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~-----~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~a 150 (873)
T KOG4194|consen 76 LPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLN-----KNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPA 150 (873)
T ss_pred CccceeeeeccccccccCcHHHHhcCCcceeeeec-----cchhhhcccccccccceeEEeeeccccccccHHHHHhHhh
Confidence 3667778888888776653 566778888888886 4566777765555666888888888777553 34777777
Q ss_pred cCEEEecCCCCccccCc-ccccccccceeecCccCCCcccC-CcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcC
Q 038430 379 LQKLDIRGCRNLRELPT-GIGKLKNMRSLLNGLTCSLKYMP-IGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLI 456 (677)
Q Consensus 379 L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L 456 (677)
|+.|||+.|. +.++|. .+..-.++++|++++|. ++.+- ..|..+.+|.+|.+..+... ......+++|++|
T Consensus 151 lrslDLSrN~-is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLsrNrit-----tLp~r~Fk~L~~L 223 (873)
T KOG4194|consen 151 LRSLDLSRNL-ISEIPKPSFPAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLSRNRIT-----TLPQRSFKRLPKL 223 (873)
T ss_pred hhhhhhhhch-hhcccCCCCCCCCCceEEeecccc-ccccccccccccchheeeecccCccc-----ccCHHHhhhcchh
Confidence 8888888776 666664 35555677777777773 44433 34666777777777776665 3455566666666
Q ss_pred CcccccCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCC-cccccCCccccchhh
Q 038430 457 RKCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGG-YKEEKGGKVVDGEYE 535 (677)
Q Consensus 457 ~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 535 (677)
+.|.+.. +.+.......+.++++|+.|.+..|+....+ ++- |..+++. . .
T Consensus 224 ~~LdLnr----N~irive~ltFqgL~Sl~nlklqrN~I~kL~-------------------DG~Fy~l~kme-~-----l 274 (873)
T KOG4194|consen 224 ESLDLNR----NRIRIVEGLTFQGLPSLQNLKLQRNDISKLD-------------------DGAFYGLEKME-H-----L 274 (873)
T ss_pred hhhhccc----cceeeehhhhhcCchhhhhhhhhhcCccccc-------------------Ccceeeecccc-e-----e
Confidence 6666654 2232333344555555555555544221100 000 1111100 0 0
Q ss_pred hhhcchhhHHHHhhhcCCCCCCcEEEEecCCCCCC-ChhHhhccCCCeEEEeCCCCCCcCCC--CCCcc-cceeeccccc
Q 038430 536 ERRRKNEKDEQLLEALQPPLNVEKLWILFNGGNIL-PKWLTSLTNLSDLKLVFCENCEQLPP--LGKLP-LEKLELCHLK 611 (677)
Q Consensus 536 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~c~~~~~l~~--l~~l~-L~~L~l~~~~ 611 (677)
..+ .+.....--+.+-.++.|+.|+++.|.+..+ ++.....++|+.|+|++| .++.++. +..|. |++|+|++ +
T Consensus 275 ~L~-~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~-N 351 (873)
T KOG4194|consen 275 NLE-TNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSN-RITRLDEGSFRVLSQLEELNLSH-N 351 (873)
T ss_pred ecc-cchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccc-ccccCChhHHHHHHHhhhhcccc-c
Confidence 000 0001111122344568899999999998865 556678899999999988 7777775 77888 99999997 7
Q ss_pred cceEeCCccccCCCCCCCCCCCCCCCcccCCCccceeeecccccCcccccc-CCccccCCCcccccC
Q 038430 612 SVKRVGNEFLEIEESEDDPSSSSSSSSVTAFPKVKSLEIKELEEGNYRITR-KENISIIPRLSSLRI 677 (677)
Q Consensus 612 ~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~p~L~~L~i 677 (677)
++..+.+..+ ..+.+|++|+++.+. -.|.+++ ...+..||+|+.|++
T Consensus 352 si~~l~e~af------------------~~lssL~~LdLr~N~-ls~~IEDaa~~f~gl~~LrkL~l 399 (873)
T KOG4194|consen 352 SIDHLAEGAF------------------VGLSSLHKLDLRSNE-LSWCIEDAAVAFNGLPSLRKLRL 399 (873)
T ss_pred chHHHHhhHH------------------HHhhhhhhhcCcCCe-EEEEEecchhhhccchhhhheee
Confidence 7877755443 577899999998754 3444442 233346888888864
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.66 E-value=8.5e-19 Score=172.07 Aligned_cols=300 Identities=21% Similarity=0.255 Sum_probs=214.1
Q ss_pred ceEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcCEEE
Q 038430 304 KVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKLD 383 (677)
Q Consensus 304 ~l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~ 383 (677)
.+..+..+++.+..+|+.+.....++.|+.+ .+.+..+|++++.+..|..|+..+|++.++|+++.++..|..|+
T Consensus 92 ~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s-----~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~ 166 (565)
T KOG0472|consen 92 ALKSLNVSHNKLSELPEQIGSLISLVKLDCS-----SNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLD 166 (565)
T ss_pred HHHHhhcccchHhhccHHHhhhhhhhhhhcc-----ccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhh
Confidence 3445566666666666666666666666666 45667788888888889999998899999999988889999999
Q ss_pred ecCCCCccccCcccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccccC
Q 038430 384 IRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIEG 463 (677)
Q Consensus 384 L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~ 463 (677)
+.+|. +..+|+..-.|+.|++|+...| .++.+|+.++.|.+|.-|++..+... .++++..+..|..|.+..
T Consensus 167 ~~~n~-l~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~lg~l~~L~~LyL~~Nki~-------~lPef~gcs~L~Elh~g~ 237 (565)
T KOG0472|consen 167 LEGNK-LKALPENHIAMKRLKHLDCNSN-LLETLPPELGGLESLELLYLRRNKIR-------FLPEFPGCSLLKELHVGE 237 (565)
T ss_pred ccccc-hhhCCHHHHHHHHHHhcccchh-hhhcCChhhcchhhhHHHHhhhcccc-------cCCCCCccHHHHHHHhcc
Confidence 99888 8888877667999999999888 78899999999999999999888765 455777777788777765
Q ss_pred ccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcchhh
Q 038430 464 LSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKNEK 543 (677)
Q Consensus 464 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (677)
+.+.......++.+++|..|++..| .
T Consensus 238 ----N~i~~lpae~~~~L~~l~vLDLRdN--------------------------------------------------k 263 (565)
T KOG0472|consen 238 ----NQIEMLPAEHLKHLNSLLVLDLRDN--------------------------------------------------K 263 (565)
T ss_pred ----cHHHhhHHHHhcccccceeeecccc--------------------------------------------------c
Confidence 3344444455668899999999877 2
Q ss_pred HHHHhhhcCCCCCCcEEEEecCCCCCCChhHhhccCCCeEEEeCCCCCC-------------------------------
Q 038430 544 DEQLLEALQPPLNVEKLWILFNGGNILPKWLTSLTNLSDLKLVFCENCE------------------------------- 592 (677)
Q Consensus 544 ~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~~~------------------------------- 592 (677)
..+.+..+..+++|++|++++|.++.+|..++++ .|+.|.+.||+.-+
T Consensus 264 lke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~ 342 (565)
T KOG0472|consen 264 LKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEG 342 (565)
T ss_pred cccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcc
Confidence 3445556666789999999999999999999999 89999999985210
Q ss_pred ------cCCC-----CCCcc-cceeeccccccceEeCCccccCCC---CCCCCC--------------------------
Q 038430 593 ------QLPP-----LGKLP-LEKLELCHLKSVKRVGNEFLEIEE---SEDDPS-------------------------- 631 (677)
Q Consensus 593 ------~l~~-----l~~l~-L~~L~l~~~~~l~~i~~~~~~~~~---~~~~~~-------------------------- 631 (677)
..|. ...+- .+.|++++ .+++.++.+.+.+.. +..-++
T Consensus 343 ~~e~~~t~~~~~~~~~~~~i~tkiL~~s~-~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsn 421 (565)
T KOG0472|consen 343 GTETAMTLPSESFPDIYAIITTKILDVSD-KQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSN 421 (565)
T ss_pred cccccCCCCCCcccchhhhhhhhhhcccc-cccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhc
Confidence 0000 01122 66677775 567777765544433 111112
Q ss_pred --CCCCCCcccCCCccceeeecccccCccccccCCccccCCCcccccC
Q 038430 632 --SSSSSSSVTAFPKVKSLEIKELEEGNYRITRKENISIIPRLSSLRI 677 (677)
Q Consensus 632 --~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~i 677 (677)
=|-.+.-...|++|..|++++..-..+|.. .+ ++-.||+|+|
T Consensus 422 n~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e--~~--~lv~Lq~Lnl 465 (565)
T KOG0472|consen 422 NKISFVPLELSQLQKLTFLDLSNNLLNDLPEE--MG--SLVRLQTLNL 465 (565)
T ss_pred CccccchHHHHhhhcceeeecccchhhhcchh--hh--hhhhhheecc
Confidence 222333445678888888887766556554 33 5667777764
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.64 E-value=1.3e-17 Score=163.90 Aligned_cols=121 Identities=26% Similarity=0.377 Sum_probs=58.6
Q ss_pred ceEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhc-cCCCcCEE
Q 038430 304 KVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLC-ELYNLQKL 382 (677)
Q Consensus 304 ~l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~-~l~~L~~L 382 (677)
.+.+++...|..+.+|+.++.+.+|..|++. .+.+..+| +|+++..|..|.++.|.|..+|...+ ++.+|.+|
T Consensus 184 ~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~-----~Nki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vL 257 (565)
T KOG0472|consen 184 RLKHLDCNSNLLETLPPELGGLESLELLYLR-----RNKIRFLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVL 257 (565)
T ss_pred HHHhcccchhhhhcCChhhcchhhhHHHHhh-----hcccccCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceee
Confidence 4444555555555555555555555555554 23344444 34444445555555554444444433 44555555
Q ss_pred EecCCCCccccCcccccccccceeecCccCCCcccCCcCCCCCCCCccCce
Q 038430 383 DIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKF 433 (677)
Q Consensus 383 ~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~ 433 (677)
||++|+ ++++|+.+..+.+|.+||+++| .+..+|.++|++ .|+.|.+.
T Consensus 258 DLRdNk-lke~Pde~clLrsL~rLDlSNN-~is~Lp~sLgnl-hL~~L~le 305 (565)
T KOG0472|consen 258 DLRDNK-LKEVPDEICLLRSLERLDLSNN-DISSLPYSLGNL-HLKFLALE 305 (565)
T ss_pred eccccc-cccCchHHHHhhhhhhhcccCC-ccccCCcccccc-eeeehhhc
Confidence 555544 5555555555555555555544 344444445544 44444433
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.55 E-value=1.6e-16 Score=171.57 Aligned_cols=227 Identities=24% Similarity=0.281 Sum_probs=171.4
Q ss_pred CCCcCEEEecCccccccchhhccCCCcCEEEecCCCCccccCcccccccccceeecCccCCCcccCCcCCCCCCCCccCc
Q 038430 353 LMHLKYLNLSELHIERLPKTLCELYNLQKLDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDK 432 (677)
Q Consensus 353 l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l 432 (677)
-.+|++++++++++..+|..++.+.+|+.+++.+|. +..+|..+..+++|+.|.+..| .+..+|+..+.+++|++|++
T Consensus 240 p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~-l~~lp~ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~tLdL 317 (1081)
T KOG0618|consen 240 PLNLQYLDISHNNLSNLPEWIGACANLEALNANHNR-LVALPLRISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLDL 317 (1081)
T ss_pred cccceeeecchhhhhcchHHHHhcccceEecccchh-HHhhHHHHhhhhhHHHHHhhhh-hhhhCCCcccccceeeeeee
Confidence 357899999999999999889999999999999988 7999999999999999999999 68889998889999999999
Q ss_pred eeeCCCcCCCCcccccccccCCc-CCcccccCccC--------------------CCChhHHHHhhccCCcccCceEEEe
Q 038430 433 FAVGGGVDGGSTCRLECLKNFQL-IRKCGIEGLSN--------------------VSHLDEAERLELKNMENLLHLYLWF 491 (677)
Q Consensus 433 ~~~~~~~~~~~~~~~~~L~~l~~-L~~L~i~~~~~--------------------~~~~~~~~~~~l~~~~~L~~L~l~~ 491 (677)
..+.....+. ..+..+.. |+.|+.+.... -+.+.+.....+.++++|+.|+|++
T Consensus 318 ~~N~L~~lp~-----~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsy 392 (1081)
T KOG0618|consen 318 QSNNLPSLPD-----NFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSY 392 (1081)
T ss_pred hhccccccch-----HHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecc
Confidence 9887664332 11111111 22222221100 0333344445577889999999998
Q ss_pred ecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcchhhHHHHhhhcCCCCCCcEEEEecCCCCCCC
Q 038430 492 EVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKNEKDEQLLEALQPPLNVEKLWILFNGGNILP 571 (677)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp 571 (677)
|.... .-...+..+..|++|+|+||.+.++|
T Consensus 393 NrL~~-------------------------------------------------fpas~~~kle~LeeL~LSGNkL~~Lp 423 (1081)
T KOG0618|consen 393 NRLNS-------------------------------------------------FPASKLRKLEELEELNLSGNKLTTLP 423 (1081)
T ss_pred ccccc-------------------------------------------------CCHHHHhchHHhHHHhcccchhhhhh
Confidence 82221 11123456678899999999999999
Q ss_pred hhHhhccCCCeEEEeCCCCCCcCCCCCCcc-cceeeccccccceEeCCccccCCCCCCCCCCCCCCCcccCCCccceeee
Q 038430 572 KWLTSLTNLSDLKLVFCENCEQLPPLGKLP-LEKLELCHLKSVKRVGNEFLEIEESEDDPSSSSSSSSVTAFPKVKSLEI 650 (677)
Q Consensus 572 ~~~~~l~~L~~L~l~~c~~~~~l~~l~~l~-L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 650 (677)
+.+..++.|++|...+| .+..+|.+.++| |+.++++ |++|+.+..... ..-|+|+.|++
T Consensus 424 ~tva~~~~L~tL~ahsN-~l~~fPe~~~l~qL~~lDlS-~N~L~~~~l~~~------------------~p~p~LkyLdl 483 (1081)
T KOG0618|consen 424 DTVANLGRLHTLRAHSN-QLLSFPELAQLPQLKVLDLS-CNNLSEVTLPEA------------------LPSPNLKYLDL 483 (1081)
T ss_pred HHHHhhhhhHHHhhcCC-ceeechhhhhcCcceEEecc-cchhhhhhhhhh------------------CCCcccceeec
Confidence 99999999999999877 788899999999 9999998 788888754332 22389999999
Q ss_pred ccccc
Q 038430 651 KELEE 655 (677)
Q Consensus 651 ~~~~~ 655 (677)
+++..
T Consensus 484 SGN~~ 488 (1081)
T KOG0618|consen 484 SGNTR 488 (1081)
T ss_pred cCCcc
Confidence 99773
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.55 E-value=1.4e-16 Score=171.95 Aligned_cols=243 Identities=21% Similarity=0.208 Sum_probs=156.0
Q ss_pred CCceEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcCE
Q 038430 302 GGKVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQK 381 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~ 381 (677)
+..+..++++++....+|.++..+.+|..+...+ +.+..+|..+..+..|++|++.+|.+..+|+...++..|++
T Consensus 240 p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~-----N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~t 314 (1081)
T KOG0618|consen 240 PLNLQYLDISHNNLSNLPEWIGACANLEALNANH-----NRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRT 314 (1081)
T ss_pred cccceeeecchhhhhcchHHHHhcccceEecccc-----hhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeee
Confidence 4455566666666655665556666666665552 33455555555566666666666666666655555666666
Q ss_pred EEecCCCCccccCccccc-cc-ccceeecCccCCCcccCCc-CCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCc
Q 038430 382 LDIRGCRNLRELPTGIGK-LK-NMRSLLNGLTCSLKYMPIG-ISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRK 458 (677)
Q Consensus 382 L~L~~~~~l~~lp~~i~~-l~-~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~ 458 (677)
|+|..|. +..+|+.+-. +. .|+.|+.+.| .+...|.. -.....|+.|++.++... ...+..|.++.+|+.
T Consensus 315 LdL~~N~-L~~lp~~~l~v~~~~l~~ln~s~n-~l~~lp~~~e~~~~~Lq~LylanN~Lt-----d~c~p~l~~~~hLKV 387 (1081)
T KOG0618|consen 315 LDLQSNN-LPSLPDNFLAVLNASLNTLNVSSN-KLSTLPSYEENNHAALQELYLANNHLT-----DSCFPVLVNFKHLKV 387 (1081)
T ss_pred eeehhcc-ccccchHHHhhhhHHHHHHhhhhc-cccccccccchhhHHHHHHHHhcCccc-----ccchhhhccccceee
Confidence 6666655 5555553222 11 1444444444 23333311 123455677777776665 445667888888999
Q ss_pred ccccCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhh
Q 038430 459 CGIEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERR 538 (677)
Q Consensus 459 L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (677)
|+++. +.+..+....+.++..|+.|+|++|
T Consensus 388 LhLsy----NrL~~fpas~~~kle~LeeL~LSGN---------------------------------------------- 417 (1081)
T KOG0618|consen 388 LHLSY----NRLNSFPASKLRKLEELEELNLSGN---------------------------------------------- 417 (1081)
T ss_pred eeecc----cccccCCHHHHhchHHhHHHhcccc----------------------------------------------
Confidence 99887 4444445566788899999999998
Q ss_pred cchhhHHHHhhhcCCCCCCcEEEEecCCCCCCChhHhhccCCCeEEEeCCCCCCc--CCCCCCcc-cceeecccccc
Q 038430 539 RKNEKDEQLLEALQPPLNVEKLWILFNGGNILPKWLTSLTNLSDLKLVFCENCEQ--LPPLGKLP-LEKLELCHLKS 612 (677)
Q Consensus 539 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~~~~--l~~l~~l~-L~~L~l~~~~~ 612 (677)
....++..+..++.|+.|...+|.+..+| -+..++.|+.++++.| .+.. +|..-.-| |++|++++...
T Consensus 418 ----kL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N-~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 418 ----KLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCN-NLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred ----hhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccc-hhhhhhhhhhCCCcccceeeccCCcc
Confidence 33445566677889999999999999999 7899999999999876 4432 33222227 99999998554
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.48 E-value=7.9e-14 Score=156.49 Aligned_cols=115 Identities=25% Similarity=0.411 Sum_probs=52.0
Q ss_pred eEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcCEEEe
Q 038430 305 VRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKLDI 384 (677)
Q Consensus 305 l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L 384 (677)
...|.+.++++..+|..+. ++|+.|++++ +.+..+|..+. .+|++|++++|.++.+|..+. .+|+.|+|
T Consensus 180 ~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~-----N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~L 248 (754)
T PRK15370 180 KTELRLKILGLTTIPACIP--EQITTLILDN-----NELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMEL 248 (754)
T ss_pred ceEEEeCCCCcCcCCcccc--cCCcEEEecC-----CCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEEC
Confidence 3445555544444443332 3455555542 23334444332 345555555555555544332 24555555
Q ss_pred cCCCCccccCcccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeC
Q 038430 385 RGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVG 436 (677)
Q Consensus 385 ~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~ 436 (677)
++|. +..+|..+. ++|+.|++++| .+..+|..+. .+|+.|++.++.
T Consensus 249 s~N~-L~~LP~~l~--s~L~~L~Ls~N-~L~~LP~~l~--~sL~~L~Ls~N~ 294 (754)
T PRK15370 249 SINR-ITELPERLP--SALQSLDLFHN-KISCLPENLP--EELRYLSVYDNS 294 (754)
T ss_pred cCCc-cCcCChhHh--CCCCEEECcCC-ccCccccccC--CCCcEEECCCCc
Confidence 5554 444544332 34555555544 3334444332 245555544443
No 16
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.47 E-value=1.1e-15 Score=133.49 Aligned_cols=186 Identities=26% Similarity=0.303 Sum_probs=125.3
Q ss_pred cCCCCCcCEEEecCccccccchhhccCCCcCEEEecCCCCccccCcccccccccceeecCccCCCcccCCcCCCCCCCCc
Q 038430 350 VGKLMHLKYLNLSELHIERLPKTLCELYNLQKLDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRT 429 (677)
Q Consensus 350 ~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~ 429 (677)
+..+.+...|.||+|+++.+|+.|..+.+|+.|++.+|. ++++|.+++.|++|++|+++-| .+..+|.++|.+..|+.
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~lev 106 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALEV 106 (264)
T ss_pred ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchh-hhhcCccccCCCchhhh
Confidence 345566667777777777777777777777777777777 7777777777777877777766 56667777777777777
Q ss_pred cCceeeCCCcCCCCcccccccccCCcCCcccccCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCccccccccccc
Q 038430 430 LDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENED 509 (677)
Q Consensus 430 L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 509 (677)
|++.++.... ...+ .++-.|..|+-|+++.|
T Consensus 107 ldltynnl~e----~~lp----------------------------gnff~m~tlralyl~dn----------------- 137 (264)
T KOG0617|consen 107 LDLTYNNLNE----NSLP----------------------------GNFFYMTTLRALYLGDN----------------- 137 (264)
T ss_pred hhcccccccc----ccCC----------------------------cchhHHHHHHHHHhcCC-----------------
Confidence 7776655432 1111 12233445555566544
Q ss_pred CCCCCCCCCCCcccccCCccccchhhhhhcchhhHHHHhhhcCCCCCCcEEEEecCCCCCCChhHhhccCCCeEEEeCCC
Q 038430 510 EGGEDEDEDGGYKEEKGGKVVDGEYEERRRKNEKDEQLLEALQPPLNVEKLWILFNGGNILPKWLTSLTNLSDLKLVFCE 589 (677)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~c~ 589 (677)
.-+.++..++.+++|+.|.++.|.+.++|.-++.+..|+.|++.+|
T Consensus 138 ---------------------------------dfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgn- 183 (264)
T KOG0617|consen 138 ---------------------------------DFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGN- 183 (264)
T ss_pred ---------------------------------CcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccc-
Confidence 1233445566778888999999988899999999999999999988
Q ss_pred CCCcCCC-CCCcc----cceeeccccccceEeCCcc
Q 038430 590 NCEQLPP-LGKLP----LEKLELCHLKSVKRVGNEF 620 (677)
Q Consensus 590 ~~~~l~~-l~~l~----L~~L~l~~~~~l~~i~~~~ 620 (677)
.++.+|+ ++++. =+...+.+.+-+..|.++|
T Consensus 184 rl~vlppel~~l~l~~~k~v~r~E~NPwv~pIaeQf 219 (264)
T KOG0617|consen 184 RLTVLPPELANLDLVGNKQVMRMEENPWVNPIAEQF 219 (264)
T ss_pred eeeecChhhhhhhhhhhHHHHhhhhCCCCChHHHHH
Confidence 6666664 55544 2345555555555554443
No 17
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.44 E-value=2e-15 Score=131.76 Aligned_cols=150 Identities=21% Similarity=0.304 Sum_probs=134.3
Q ss_pred CCceEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcCE
Q 038430 302 GGKVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQK 381 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~ 381 (677)
...+++|.+++|.+..+|..+..+.+|++|+++ ++.++.+|.+++.++.|+.|+++-|++..+|.+|+.++.|++
T Consensus 32 ~s~ITrLtLSHNKl~~vppnia~l~nlevln~~-----nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~lev 106 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVPPNIAELKNLEVLNLS-----NNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEV 106 (264)
T ss_pred hhhhhhhhcccCceeecCCcHHHhhhhhhhhcc-----cchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhh
Confidence 567889999999999999999999999999998 678899999999999999999999999999999999999999
Q ss_pred EEecCCCCc-cccCcccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCccc
Q 038430 382 LDIRGCRNL-RELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCG 460 (677)
Q Consensus 382 L~L~~~~~l-~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~ 460 (677)
|||.+|..- ..+|..+..|+.|+.|+++.| ....+|..++++++||.|.+..+...+ .+.+++.++.|+.|.
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~dvg~lt~lqil~lrdndll~------lpkeig~lt~lrelh 179 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPDVGKLTNLQILSLRDNDLLS------LPKEIGDLTRLRELH 179 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhcCC-CcccCChhhhhhcceeEEeeccCchhh------CcHHHHHHHHHHHHh
Confidence 999988732 568999999999999999999 677899999999999999988877644 667788888888888
Q ss_pred ccC
Q 038430 461 IEG 463 (677)
Q Consensus 461 i~~ 463 (677)
|-+
T Consensus 180 iqg 182 (264)
T KOG0617|consen 180 IQG 182 (264)
T ss_pred ccc
Confidence 876
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.42 E-value=1.6e-12 Score=145.17 Aligned_cols=236 Identities=19% Similarity=0.162 Sum_probs=122.6
Q ss_pred CCceEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcCE
Q 038430 302 GGKVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQK 381 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~ 381 (677)
+..++.|++.+|.+..+|.. +++|++|++++ +.+..+|.. .++|+.|++++|.++.+|... .+|+.
T Consensus 221 ~~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~-----N~LtsLP~l---p~sL~~L~Ls~N~L~~Lp~lp---~~L~~ 286 (788)
T PRK15387 221 PAHITTLVIPDNNLTSLPAL---PPELRTLEVSG-----NQLTSLPVL---PPGLLELSIFSNPLTHLPALP---SGLCK 286 (788)
T ss_pred hcCCCEEEccCCcCCCCCCC---CCCCcEEEecC-----CccCcccCc---ccccceeeccCCchhhhhhch---hhcCE
Confidence 44566666666666666632 45666666664 334444432 245666666666666555422 44666
Q ss_pred EEecCCCCccccCcccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccc
Q 038430 382 LDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGI 461 (677)
Q Consensus 382 L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i 461 (677)
|++++|. +..+|.. +++|+.|++++| .+..+|... .+|+.|++.++..... +.+ ..+|+.|++
T Consensus 287 L~Ls~N~-Lt~LP~~---p~~L~~LdLS~N-~L~~Lp~lp---~~L~~L~Ls~N~L~~L-------P~l--p~~Lq~LdL 349 (788)
T PRK15387 287 LWIFGNQ-LTSLPVL---PPGLQELSVSDN-QLASLPALP---SELCKLWAYNNQLTSL-------PTL--PSGLQELSV 349 (788)
T ss_pred EECcCCc-ccccccc---ccccceeECCCC-ccccCCCCc---ccccccccccCccccc-------ccc--ccccceEec
Confidence 6666665 5556542 355666666666 344454322 2344455544433321 111 123555555
Q ss_pred cCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcch
Q 038430 462 EGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKN 541 (677)
Q Consensus 462 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (677)
++.. +..++. ...+|+.|+++.|...
T Consensus 350 S~N~-Ls~LP~-------lp~~L~~L~Ls~N~L~---------------------------------------------- 375 (788)
T PRK15387 350 SDNQ-LASLPT-------LPSELYKLWAYNNRLT---------------------------------------------- 375 (788)
T ss_pred CCCc-cCCCCC-------CCcccceehhhccccc----------------------------------------------
Confidence 4421 111111 0134455555444100
Q ss_pred hhHHHHhhhcCCCCCCcEEEEecCCCCCCChhHhhccCCCeEEEeCCCCCCcCCCCCCcc-cceeeccccccceEeCCcc
Q 038430 542 EKDEQLLEALQPPLNVEKLWILFNGGNILPKWLTSLTNLSDLKLVFCENCEQLPPLGKLP-LEKLELCHLKSVKRVGNEF 620 (677)
Q Consensus 542 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~~~~l~~l~~l~-L~~L~l~~~~~l~~i~~~~ 620 (677)
.++. .+++|+.|++++|.+..+|.. .++|+.|++++| .+..+|.+ .. |+.|++++ +.++.++..+
T Consensus 376 ----~LP~---l~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N-~LssIP~l--~~~L~~L~Ls~-NqLt~LP~sl 441 (788)
T PRK15387 376 ----SLPA---LPSGLKELIVSGNRLTSLPVL---PSELKELMVSGN-RLTSLPML--PSGLLSLSVYR-NQLTRLPESL 441 (788)
T ss_pred ----cCcc---cccccceEEecCCcccCCCCc---ccCCCEEEccCC-cCCCCCcc--hhhhhhhhhcc-CcccccChHH
Confidence 0110 124677777777777766643 356777777777 45556632 23 77777765 5566554432
Q ss_pred ccCCCCCCCCCCCCCCCcccCCCccceeeeccccc
Q 038430 621 LEIEESEDDPSSSSSSSSVTAFPKVKSLEIKELEE 655 (677)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 655 (677)
..+++|+.|++++++-
T Consensus 442 -------------------~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 442 -------------------IHLSSETTVNLEGNPL 457 (788)
T ss_pred -------------------hhccCCCeEECCCCCC
Confidence 3466677777766655
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.40 E-value=5.7e-13 Score=149.66 Aligned_cols=223 Identities=21% Similarity=0.221 Sum_probs=161.2
Q ss_pred CCCceEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcC
Q 038430 301 FGGKVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQ 380 (677)
Q Consensus 301 ~~~~l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~ 380 (677)
++..++.|++.+|.+..+|..+. ++|++|++++ +.+..+|..+. .+|+.|+|++|.+..+|..+. .+|+
T Consensus 197 Ip~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~-----N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~ 265 (754)
T PRK15370 197 IPEQITTLILDNNELKSLPENLQ--GNIKTLYANS-----NQLTSIPATLP--DTIQEMELSINRITELPERLP--SALQ 265 (754)
T ss_pred cccCCcEEEecCCCCCcCChhhc--cCCCEEECCC-----CccccCChhhh--ccccEEECcCCccCcCChhHh--CCCC
Confidence 46789999999999999996654 5899999995 44567777653 479999999999999998775 5899
Q ss_pred EEEecCCCCccccCcccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCccc
Q 038430 381 KLDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCG 460 (677)
Q Consensus 381 ~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~ 460 (677)
.|++++|. +..+|..+. ++|+.|++++| .+..+|..+. .+|+.|++.++.....+ ..+ ..+|+.|.
T Consensus 266 ~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~lp--~sL~~L~Ls~N~Lt~LP------~~l--~~sL~~L~ 331 (754)
T PRK15370 266 SLDLFHNK-ISCLPENLP--EELRYLSVYDN-SIRTLPAHLP--SGITHLNVQSNSLTALP------ETL--PPGLKTLE 331 (754)
T ss_pred EEECcCCc-cCccccccC--CCCcEEECCCC-ccccCcccch--hhHHHHHhcCCccccCC------ccc--cccceecc
Confidence 99999887 888998664 58999999999 5667886553 47888888877655311 111 24577777
Q ss_pred ccCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcc
Q 038430 461 IEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRK 540 (677)
Q Consensus 461 i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (677)
+.++. +..++. .+ .++|+.|++++|....
T Consensus 332 Ls~N~-Lt~LP~----~l--~~sL~~L~Ls~N~L~~-------------------------------------------- 360 (754)
T PRK15370 332 AGENA-LTSLPA----SL--PPELQVLDVSKNQITV-------------------------------------------- 360 (754)
T ss_pred ccCCc-cccCCh----hh--cCcccEEECCCCCCCc--------------------------------------------
Confidence 76643 222222 12 2689999998872111
Q ss_pred hhhHHHHhhhcCCCCCCcEEEEecCCCCCCChhHhhccCCCeEEEeCCCCCCcCCC-----CCCcc-cceeecccc
Q 038430 541 NEKDEQLLEALQPPLNVEKLWILFNGGNILPKWLTSLTNLSDLKLVFCENCEQLPP-----LGKLP-LEKLELCHL 610 (677)
Q Consensus 541 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~~~~l~~-----l~~l~-L~~L~l~~~ 610 (677)
++..+ +++|+.|+|++|.+..+|..+. .+|+.|++++| .+..+|. .+.+| +..|++.+.
T Consensus 361 ------LP~~l--p~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~N 425 (754)
T PRK15370 361 ------LPETL--PPTITTLDVSRNALTNLPENLP--AALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYN 425 (754)
T ss_pred ------CChhh--cCCcCEEECCCCcCCCCCHhHH--HHHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeCC
Confidence 11122 3589999999999988988765 36889999988 5556663 34457 888888873
No 20
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.39 E-value=2.2e-12 Score=144.10 Aligned_cols=251 Identities=19% Similarity=0.159 Sum_probs=173.9
Q ss_pred CceEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcCEE
Q 038430 303 GKVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKL 382 (677)
Q Consensus 303 ~~l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L 382 (677)
..-..|+++.+.+..+|..+. ++|+.|.+.+ +.+..+|.. +++|++|++++|.++.+|.. .++|+.|
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~-----N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~sL~~L 267 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPD-----NNLTSLPAL---PPELRTLEVSGNQLTSLPVL---PPGLLEL 267 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh--cCCCEEEccC-----CcCCCCCCC---CCCCcEEEecCCccCcccCc---cccccee
Confidence 345578999999999997665 4899999985 456677753 57899999999999999853 4689999
Q ss_pred EecCCCCccccCcccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCccccc
Q 038430 383 DIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIE 462 (677)
Q Consensus 383 ~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~ 462 (677)
++++|. +..+|... ++|+.|++++| .+..+|.. +.+|+.|++.++.....+ .+ ...|+.|.+.
T Consensus 268 ~Ls~N~-L~~Lp~lp---~~L~~L~Ls~N-~Lt~LP~~---p~~L~~LdLS~N~L~~Lp-------~l--p~~L~~L~Ls 330 (788)
T PRK15387 268 SIFSNP-LTHLPALP---SGLCKLWIFGN-QLTSLPVL---PPGLQELSVSDNQLASLP-------AL--PSELCKLWAY 330 (788)
T ss_pred eccCCc-hhhhhhch---hhcCEEECcCC-cccccccc---ccccceeECCCCccccCC-------CC--cccccccccc
Confidence 999998 78887633 57889999999 56777763 467999999887665321 11 1235555555
Q ss_pred CccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcchh
Q 038430 463 GLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKNE 542 (677)
Q Consensus 463 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (677)
++. +..++. + ..+|+.|++++|....
T Consensus 331 ~N~-L~~LP~-----l--p~~Lq~LdLS~N~Ls~---------------------------------------------- 356 (788)
T PRK15387 331 NNQ-LTSLPT-----L--PSGLQELSVSDNQLAS---------------------------------------------- 356 (788)
T ss_pred cCc-cccccc-----c--ccccceEecCCCccCC----------------------------------------------
Confidence 421 111111 1 2479999998871111
Q ss_pred hHHHHhhhcCCCCCCcEEEEecCCCCCCChhHhhccCCCeEEEeCCCCCCcCCCCCCcc-cceeeccccccceEeCCccc
Q 038430 543 KDEQLLEALQPPLNVEKLWILFNGGNILPKWLTSLTNLSDLKLVFCENCEQLPPLGKLP-LEKLELCHLKSVKRVGNEFL 621 (677)
Q Consensus 543 ~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~~~~l~~l~~l~-L~~L~l~~~~~l~~i~~~~~ 621 (677)
++ . .+++|+.|++++|.+..+|.. .++|+.|++++| .+..+|.. .+ |+.|++++ +.++.++
T Consensus 357 ----LP-~--lp~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N-~Lt~LP~l--~s~L~~LdLS~-N~LssIP---- 418 (788)
T PRK15387 357 ----LP-T--LPSELYKLWAYNNRLTSLPAL---PSGLKELIVSGN-RLTSLPVL--PSELKELMVSG-NRLTSLP---- 418 (788)
T ss_pred ----CC-C--CCcccceehhhccccccCccc---ccccceEEecCC-cccCCCCc--ccCCCEEEccC-CcCCCCC----
Confidence 11 1 146889999999998888864 368999999998 66677753 35 99999998 4465553
Q ss_pred cCCCCCCCCCCCCCCCcccCCCccceeeecccccCccccccCCccccCCCcccccC
Q 038430 622 EIEESEDDPSSSSSSSSVTAFPKVKSLEIKELEEGNYRITRKENISIIPRLSSLRI 677 (677)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~i 677 (677)
..+.+|+.|+++++.-..+|.. +..+++|+.|++
T Consensus 419 ------------------~l~~~L~~L~Ls~NqLt~LP~s----l~~L~~L~~LdL 452 (788)
T PRK15387 419 ------------------MLPSGLLSLSVYRNQLTRLPES----LIHLSSETTVNL 452 (788)
T ss_pred ------------------cchhhhhhhhhccCcccccChH----HhhccCCCeEEC
Confidence 2234688888887655545432 235777777764
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.29 E-value=2.2e-13 Score=134.22 Aligned_cols=284 Identities=17% Similarity=0.165 Sum_probs=158.9
Q ss_pred cCCCceEEEEEEecCCCccc-ccccCCCcccEEEeCCCCCCCCCCccC-CcccCCCCCcCEEEecC-ccccccchh-hcc
Q 038430 300 AFGGKVRHLGLKFKGGASFP-MSIHGLNRLRTLLIDDESPPNSSLDKI-PENVGKLMHLKYLNLSE-LHIERLPKT-LCE 375 (677)
Q Consensus 300 ~~~~~l~~L~l~~~~~~~~p-~~~~~l~~L~~L~l~~~~l~~~~~~~l-p~~~~~l~~L~~L~Ls~-~~i~~lp~~-i~~ 375 (677)
..+.....+.+..|++..+| .+|+.+++||.|+|+. +.+..+ |+.|.+++.|-.|-+-+ |+|+.+|.. |++
T Consensus 64 ~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~-----N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~g 138 (498)
T KOG4237|consen 64 NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSK-----NNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGG 138 (498)
T ss_pred cCCCcceEEEeccCCcccCChhhccchhhhceecccc-----cchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhh
Confidence 44677778888888888777 6777888888888874 334333 56677777766665544 678877765 777
Q ss_pred CCCcCEEEecCCCCcccc-CcccccccccceeecCccCCCcccCC-cCCCCCCCCccCceeeCCCcCCCCcccccccccC
Q 038430 376 LYNLQKLDIRGCRNLREL-PTGIGKLKNMRSLLNGLTCSLKYMPI-GISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNF 453 (677)
Q Consensus 376 l~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l 453 (677)
|..|+.|.+.-|+ +.-+ .+.+..|++|..|.+..| ....++. .+..+.+++++.+..+..-. .|.+..+...
T Consensus 139 L~slqrLllNan~-i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np~ic----dCnL~wla~~ 212 (498)
T KOG4237|consen 139 LSSLQRLLLNANH-INCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNPFIC----DCNLPWLADD 212 (498)
T ss_pred HHHHHHHhcChhh-hcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCcccc----ccccchhhhH
Confidence 8888888777776 4433 345777777777777777 4556665 46677777776655443111 2222222211
Q ss_pred CcCCcccccCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccch
Q 038430 454 QLIRKCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGE 533 (677)
Q Consensus 454 ~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (677)
........++ ........+......+ ++..-...+.+... +.
T Consensus 213 ~a~~~ietsg-----------------arc~~p~rl~~~Ri~q----------------~~a~kf~c~~esl~-----s~ 254 (498)
T KOG4237|consen 213 LAMNPIETSG-----------------ARCVSPYRLYYKRINQ----------------EDARKFLCSLESLP-----SR 254 (498)
T ss_pred Hhhchhhccc-----------------ceecchHHHHHHHhcc----------------cchhhhhhhHHhHH-----Hh
Confidence 1000011111 1111000000000000 00000000000000 00
Q ss_pred hhhhhcchhhHHHHhhhcCCCCCCcEEEEecCCCCCC-ChhHhhccCCCeEEEeCCCCCCcCCC--CCCcc-cceeeccc
Q 038430 534 YEERRRKNEKDEQLLEALQPPLNVEKLWILFNGGNIL-PKWLTSLTNLSDLKLVFCENCEQLPP--LGKLP-LEKLELCH 609 (677)
Q Consensus 534 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~c~~~~~l~~--l~~l~-L~~L~l~~ 609 (677)
+. ...+-....-...+..+++|++|+|++|.+..+ +.|+..+..++.|.|..| +++.+.. +.++. |+.|+|.+
T Consensus 255 ~~--~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N-~l~~v~~~~f~~ls~L~tL~L~~ 331 (498)
T KOG4237|consen 255 LS--SEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRN-KLEFVSSGMFQGLSGLKTLSLYD 331 (498)
T ss_pred hc--cccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcc-hHHHHHHHhhhccccceeeeecC
Confidence 00 000000011122356678999999999988865 667888889999999888 6665554 67888 99999987
Q ss_pred cccceEeCCccccCCCCCCCCCCCCCCCcccCCCccceeeecccc
Q 038430 610 LKSVKRVGNEFLEIEESEDDPSSSSSSSSVTAFPKVKSLEIKELE 654 (677)
Q Consensus 610 ~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 654 (677)
++|+.+...++ +...+|.+|.+-..|
T Consensus 332 -N~it~~~~~aF------------------~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 332 -NQITTVAPGAF------------------QTLFSLSTLNLLSNP 357 (498)
T ss_pred -CeeEEEecccc------------------cccceeeeeehccCc
Confidence 77887755443 445566666665444
No 22
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.26 E-value=6.6e-12 Score=143.34 Aligned_cols=158 Identities=25% Similarity=0.332 Sum_probs=116.1
Q ss_pred ceEEEEEEecC--CCccc-ccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcC
Q 038430 304 KVRHLGLKFKG--GASFP-MSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQ 380 (677)
Q Consensus 304 ~l~~L~l~~~~--~~~~p-~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~ 380 (677)
+++.|-+..+. +..++ ..|..++.|++|++++ +....++|+.++.|.+||||+++++.+..+|.++++|..|.
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~----~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSG----NSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLI 621 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCC----CCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhh
Confidence 68888888885 55555 3478899999999998 78889999999999999999999999999999999999999
Q ss_pred EEEecCCCCccccCcccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcC--------------------
Q 038430 381 KLDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVD-------------------- 440 (677)
Q Consensus 381 ~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~-------------------- 440 (677)
+|++..+..+..+|.....|++|++|.+.... ...-...++.+.+|++|....+.....
T Consensus 622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~-~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~ 700 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPGILLELQSLRVLRLPRSA-LSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLS 700 (889)
T ss_pred eeccccccccccccchhhhcccccEEEeeccc-cccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhh
Confidence 99999998777887777779999999987653 111112234444444444433322211
Q ss_pred ---CCCcccccccccCCcCCcccccCccC
Q 038430 441 ---GGSTCRLECLKNFQLIRKCGIEGLSN 466 (677)
Q Consensus 441 ---~~~~~~~~~L~~l~~L~~L~i~~~~~ 466 (677)
.........+..+.+|+.|.|..+..
T Consensus 701 ~~~~~~~~~~~~~~~l~~L~~L~i~~~~~ 729 (889)
T KOG4658|consen 701 IEGCSKRTLISSLGSLGNLEELSILDCGI 729 (889)
T ss_pred hcccccceeecccccccCcceEEEEcCCC
Confidence 00122344556677777777777644
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.18 E-value=1.7e-12 Score=134.76 Aligned_cols=42 Identities=24% Similarity=0.056 Sum_probs=21.1
Q ss_pred HhhhcCCCCCCcEEEEecCCCCCC-ChhHh-h----ccCCCeEEEeCC
Q 038430 547 LLEALQPPLNVEKLWILFNGGNIL-PKWLT-S----LTNLSDLKLVFC 588 (677)
Q Consensus 547 ~~~~l~~~~~L~~L~l~~~~~~~l-p~~~~-~----l~~L~~L~l~~c 588 (677)
+...+..+++|+.|++++|.+... +..+. . .+.|++|++++|
T Consensus 213 l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n 260 (319)
T cd00116 213 LAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCN 260 (319)
T ss_pred HHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCC
Confidence 334444556666666666654421 11111 1 256666666666
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.11 E-value=1.3e-11 Score=128.18 Aligned_cols=240 Identities=18% Similarity=0.118 Sum_probs=156.0
Q ss_pred ceEEEEEEecCC-----CcccccccCCCcccEEEeCCCCCC--CCCCccCCcccCCCCCcCEEEecCcccc-ccchhhcc
Q 038430 304 KVRHLGLKFKGG-----ASFPMSIHGLNRLRTLLIDDESPP--NSSLDKIPENVGKLMHLKYLNLSELHIE-RLPKTLCE 375 (677)
Q Consensus 304 ~l~~L~l~~~~~-----~~~p~~~~~l~~L~~L~l~~~~l~--~~~~~~lp~~~~~l~~L~~L~Ls~~~i~-~lp~~i~~ 375 (677)
.++.+.+.++.+ ..++..+...+.++.|+++++.+. ......++..+..+++|++|++++|.+. ..+..+..
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 103 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES 103 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence 477888888776 235556777788999999875433 1222334556777889999999999876 45555655
Q ss_pred CCC---cCEEEecCCCCcc----ccCcccccc-cccceeecCccCCCc----ccCCcCCCCCCCCccCceeeCCCcCCCC
Q 038430 376 LYN---LQKLDIRGCRNLR----ELPTGIGKL-KNMRSLLNGLTCSLK----YMPIGISKLTSLRTLDKFAVGGGVDGGS 443 (677)
Q Consensus 376 l~~---L~~L~L~~~~~l~----~lp~~i~~l-~~L~~L~l~~~~~~~----~~p~~i~~l~~L~~L~l~~~~~~~~~~~ 443 (677)
+.+ |++|++++|+... .+...+..+ ++|+.|++++|.... .++..+..+.+|++|++..+..... ..
T Consensus 104 l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~ 182 (319)
T cd00116 104 LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDA-GI 182 (319)
T ss_pred HhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchH-HH
Confidence 555 9999999987321 233456666 889999999995432 2334466777899998887765420 00
Q ss_pred cccccccccCCcCCcccccCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCccc
Q 038430 444 TCRLECLKNFQLIRKCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKE 523 (677)
Q Consensus 444 ~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (677)
......+..+++|+.|+++++.-...........+..+++|+.|++++|...
T Consensus 183 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~---------------------------- 234 (319)
T cd00116 183 RALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT---------------------------- 234 (319)
T ss_pred HHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc----------------------------
Confidence 1122345566789999988764322222334556777899999999987111
Q ss_pred ccCCccccchhhhhhcchhhHHHHhhhc-CCCCCCcEEEEecCCCC-----CCChhHhhccCCCeEEEeCCC
Q 038430 524 EKGGKVVDGEYEERRRKNEKDEQLLEAL-QPPLNVEKLWILFNGGN-----ILPKWLTSLTNLSDLKLVFCE 589 (677)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~-----~lp~~~~~l~~L~~L~l~~c~ 589 (677)
......+...+ ...+.|++|++.+|.+. .++..+..+++|++|++++|.
T Consensus 235 -----------------~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 235 -----------------DAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred -----------------hHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence 01112222222 13578999999999875 233444567899999999983
No 25
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.08 E-value=9.5e-12 Score=122.92 Aligned_cols=275 Identities=19% Similarity=0.220 Sum_probs=165.9
Q ss_pred EEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcc-cCCCCCcCEEEecCcccccc-chhhccCCCcCEEEec
Q 038430 308 LGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPEN-VGKLMHLKYLNLSELHIERL-PKTLCELYNLQKLDIR 385 (677)
Q Consensus 308 L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~-~~~l~~L~~L~Ls~~~i~~l-p~~i~~l~~L~~L~L~ 385 (677)
++-++.+..++|..+. +.-..++|. .+.+..+|+. |+.+++||.||||+|.|+.+ |..|.++.+|..|-+.
T Consensus 51 VdCr~~GL~eVP~~LP--~~tveirLd-----qN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvly 123 (498)
T KOG4237|consen 51 VDCRGKGLTEVPANLP--PETVEIRLD-----QNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLY 123 (498)
T ss_pred EEccCCCcccCcccCC--CcceEEEec-----cCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhh
Confidence 3444556667775543 345567776 4677888755 79999999999999999976 6679999999988888
Q ss_pred CCCCccccCc-ccccccccceeecCccCCCcccC-CcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccccC
Q 038430 386 GCRNLRELPT-GIGKLKNMRSLLNGLTCSLKYMP-IGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIEG 463 (677)
Q Consensus 386 ~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~ 463 (677)
++..++.+|. .|++|..|+.|.+.-|. +..++ ..+..|.+|..|.++++..... .-..+..+..++.+.+..
T Consensus 124 g~NkI~~l~k~~F~gL~slqrLllNan~-i~Cir~~al~dL~~l~lLslyDn~~q~i-----~~~tf~~l~~i~tlhlA~ 197 (498)
T KOG4237|consen 124 GNNKITDLPKGAFGGLSSLQRLLLNANH-INCIRQDALRDLPSLSLLSLYDNKIQSI-----CKGTFQGLAAIKTLHLAQ 197 (498)
T ss_pred cCCchhhhhhhHhhhHHHHHHHhcChhh-hcchhHHHHHHhhhcchhcccchhhhhh-----ccccccchhccchHhhhc
Confidence 8555999997 48889999999888773 44444 4578888888888887765531 112344455555544433
Q ss_pred ccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccch-hhhhhcchh
Q 038430 464 LSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGE-YEERRRKNE 542 (677)
Q Consensus 464 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 542 (677)
... ....+++.+..-.-... .+-+|+- +++.. .-..+....
T Consensus 198 np~---------icdCnL~wla~~~a~~~-----------------------ietsgar------c~~p~rl~~~Ri~q~ 239 (498)
T KOG4237|consen 198 NPF---------ICDCNLPWLADDLAMNP-----------------------IETSGAR------CVSPYRLYYKRINQE 239 (498)
T ss_pred Ccc---------ccccccchhhhHHhhch-----------------------hhcccce------ecchHHHHHHHhccc
Confidence 110 11112222211000000 0000000 00000 001111122
Q ss_pred hHHHHhhhcCCCCCCcEEEEecCCCCCCCh-hHhhccCCCeEEEeCCCCCCcCCC--CCCcc-cceeeccccccceEeCC
Q 038430 543 KDEQLLEALQPPLNVEKLWILFNGGNILPK-WLTSLTNLSDLKLVFCENCEQLPP--LGKLP-LEKLELCHLKSVKRVGN 618 (677)
Q Consensus 543 ~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~c~~~~~l~~--l~~l~-L~~L~l~~~~~l~~i~~ 618 (677)
....+...+... ...+....+.....|. .+..|++|++|++++| .++.+.. +.++. ++.|.|.. ++|+.+..
T Consensus 240 ~a~kf~c~~esl--~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN-~i~~i~~~aFe~~a~l~eL~L~~-N~l~~v~~ 315 (498)
T KOG4237|consen 240 DARKFLCSLESL--PSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNN-KITRIEDGAFEGAAELQELYLTR-NKLEFVSS 315 (498)
T ss_pred chhhhhhhHHhH--HHhhccccCcCCcChHHHHhhcccceEeccCCC-ccchhhhhhhcchhhhhhhhcCc-chHHHHHH
Confidence 222222222111 1123333444455553 3669999999999998 6655553 88889 99999987 77888865
Q ss_pred ccccCCCCCCCCCCCCCCCcccCCCccceeeeccccc
Q 038430 619 EFLEIEESEDDPSSSSSSSSVTAFPKVKSLEIKELEE 655 (677)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 655 (677)
..+ ..+..|+.|++.+...
T Consensus 316 ~~f------------------~~ls~L~tL~L~~N~i 334 (498)
T KOG4237|consen 316 GMF------------------QGLSGLKTLSLYDNQI 334 (498)
T ss_pred Hhh------------------hccccceeeeecCCee
Confidence 544 6788999999998765
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.07 E-value=5.7e-12 Score=129.90 Aligned_cols=189 Identities=25% Similarity=0.317 Sum_probs=125.1
Q ss_pred eEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcCEEEe
Q 038430 305 VRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKLDI 384 (677)
Q Consensus 305 l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L 384 (677)
...++++.|....+|..+..+..|..+.+. .+.+..+|..++++..|.||+|+.|++..+|..++.|+ |+.|-+
T Consensus 77 t~~aDlsrNR~~elp~~~~~f~~Le~liLy-----~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 77 TVFADLSRNRFSELPEEACAFVSLESLILY-----HNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIV 150 (722)
T ss_pred hhhhhccccccccCchHHHHHHHHHHHHHH-----hccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEE
Confidence 345566666666677666666666666666 35566667777777777777777777777777776665 677777
Q ss_pred cCCCCccccCcccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccccCc
Q 038430 385 RGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIEGL 464 (677)
Q Consensus 385 ~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~ 464 (677)
++|+ ++.+|..++.+..|.+|+.+.| .+..+|..++.+.+|+.|.+..+...
T Consensus 151 sNNk-l~~lp~~ig~~~tl~~ld~s~n-ei~slpsql~~l~slr~l~vrRn~l~-------------------------- 202 (722)
T KOG0532|consen 151 SNNK-LTSLPEEIGLLPTLAHLDVSKN-EIQSLPSQLGYLTSLRDLNVRRNHLE-------------------------- 202 (722)
T ss_pred ecCc-cccCCcccccchhHHHhhhhhh-hhhhchHHhhhHHHHHHHHHhhhhhh--------------------------
Confidence 7666 7777777776677777777766 35556666666655555543322211
Q ss_pred cCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcchhhH
Q 038430 465 SNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKNEKD 544 (677)
Q Consensus 465 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (677)
T Consensus 203 -------------------------------------------------------------------------------- 202 (722)
T KOG0532|consen 203 -------------------------------------------------------------------------------- 202 (722)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhhcCCCCCCcEEEEecCCCCCCChhHhhccCCCeEEEeCCCCCCcCCC----CCCcc-cceeecccc
Q 038430 545 EQLLEALQPPLNVEKLWILFNGGNILPKWLTSLTNLSDLKLVFCENCEQLPP----LGKLP-LEKLELCHL 610 (677)
Q Consensus 545 ~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~~~~l~~----l~~l~-L~~L~l~~~ 610 (677)
.++..+. .-.|.+||+++|++..+|..+..|+.|++|.|.+| -+++.|. -|..- .|+|++..|
T Consensus 203 -~lp~El~-~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenN-PLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 203 -DLPEELC-SLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENN-PLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred -hCCHHHh-CCceeeeecccCceeecchhhhhhhhheeeeeccC-CCCCChHHHHhccceeeeeeecchhc
Confidence 0111111 12467888888888889988889999999999877 5556553 45566 888888877
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.69 E-value=1.2e-08 Score=109.17 Aligned_cols=122 Identities=32% Similarity=0.401 Sum_probs=89.9
Q ss_pred EEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCC-CcCEEEecCccccccchhhccCCCcCEEEecC
Q 038430 308 LGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLM-HLKYLNLSELHIERLPKTLCELYNLQKLDIRG 386 (677)
Q Consensus 308 L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~-~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~ 386 (677)
+....+.+..-...+...+.+..|.+. ++.+..+|...+.+. +|+.|++++|.+..+|..+..+++|+.|++++
T Consensus 98 l~~~~~~~~~~~~~~~~~~~l~~L~l~-----~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~ 172 (394)
T COG4886 98 LDLNLNRLRSNISELLELTNLTSLDLD-----NNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSF 172 (394)
T ss_pred eeccccccccCchhhhcccceeEEecC-----CcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCC
Confidence 444444442223344555678888877 566777777667674 88888888888888877788888888888888
Q ss_pred CCCccccCcccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeC
Q 038430 387 CRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVG 436 (677)
Q Consensus 387 ~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~ 436 (677)
|. +..+|...+.+++|+.|++++| .+..+|..++.+..|++|.+.++.
T Consensus 173 N~-l~~l~~~~~~~~~L~~L~ls~N-~i~~l~~~~~~~~~L~~l~~~~N~ 220 (394)
T COG4886 173 ND-LSDLPKLLSNLSNLNNLDLSGN-KISDLPPEIELLSALEELDLSNNS 220 (394)
T ss_pred ch-hhhhhhhhhhhhhhhheeccCC-ccccCchhhhhhhhhhhhhhcCCc
Confidence 88 8888886668888888888888 577788766667778888776653
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.68 E-value=1.8e-08 Score=92.58 Aligned_cols=128 Identities=26% Similarity=0.278 Sum_probs=50.6
Q ss_pred CCceEEEEEEecCCCccccccc-CCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhh-ccCCCc
Q 038430 302 GGKVRHLGLKFKGGASFPMSIH-GLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTL-CELYNL 379 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~~~p~~~~-~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i-~~l~~L 379 (677)
+.+++.|+++++.+..+. .+. .+.+|+.|++++ +.+..++ .+..+++|+.|++++|.|+.+++.+ ..+++|
T Consensus 18 ~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~-----N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L 90 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSN-----NQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNL 90 (175)
T ss_dssp -------------------S--TT-TT--EEE-TT-----S--S--T-T----TT--EEE--SS---S-CHHHHHH-TT-
T ss_pred cccccccccccccccccc-chhhhhcCCCEEECCC-----CCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcC
Confidence 446788999999887765 444 578899999984 5566663 5778899999999999999886655 468999
Q ss_pred CEEEecCCCCccccCc--ccccccccceeecCccCCCcccCC----cCCCCCCCCccCceeeCCC
Q 038430 380 QKLDIRGCRNLRELPT--GIGKLKNMRSLLNGLTCSLKYMPI----GISKLTSLRTLDKFAVGGG 438 (677)
Q Consensus 380 ~~L~L~~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~p~----~i~~l~~L~~L~l~~~~~~ 438 (677)
++|++++|+ +..+.. .+..+++|+.|++.+|... ..+. -+..+++|+.||...+...
T Consensus 91 ~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~-~~~~YR~~vi~~lP~Lk~LD~~~V~~~ 153 (175)
T PF14580_consen 91 QELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVC-EKKNYRLFVIYKLPSLKVLDGQDVTEE 153 (175)
T ss_dssp -EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGG-GSTTHHHHHHHH-TT-SEETTEETTS-
T ss_pred CEEECcCCc-CCChHHhHHHHcCCCcceeeccCCccc-chhhHHHHHHHHcChhheeCCEEccHH
Confidence 999999887 655443 4677889999999988533 3232 1556778888887665443
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.63 E-value=7.4e-09 Score=99.02 Aligned_cols=87 Identities=22% Similarity=0.221 Sum_probs=70.5
Q ss_pred hcCCCCCCcEEEEecCCCCCCChhHhhccCCCeEEEeCCCCCCcCCCCCCcc-cceeeccccccceEeCCccccCCCCCC
Q 038430 550 ALQPPLNVEKLWILFNGGNILPKWLTSLTNLSDLKLVFCENCEQLPPLGKLP-LEKLELCHLKSVKRVGNEFLEIEESED 628 (677)
Q Consensus 550 ~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~~~~l~~l~~l~-L~~L~l~~~~~l~~i~~~~~~~~~~~~ 628 (677)
.+..+++|..|+|++|.+.++..|-..+.|.++|.|++| .++++..+++|- |.+|++++ ++++.++.-
T Consensus 324 nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N-~iE~LSGL~KLYSLvnLDl~~-N~Ie~ldeV--------- 392 (490)
T KOG1259|consen 324 NLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQN-KIETLSGLRKLYSLVNLDLSS-NQIEELDEV--------- 392 (490)
T ss_pred hhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhh-hHhhhhhhHhhhhheeccccc-cchhhHHHh---------
Confidence 456678899999999998888888889999999999988 888888888888 99999987 556655321
Q ss_pred CCCCCCCCCcccCCCccceeeeccccc
Q 038430 629 DPSSSSSSSSVTAFPKVKSLEIKELEE 655 (677)
Q Consensus 629 ~~~~~~~~~~~~~~~~L~~L~l~~~~~ 655 (677)
.+.+.+|+|+.+.+.++|-
T Consensus 393 --------~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 393 --------NHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred --------cccccccHHHHHhhcCCCc
Confidence 1247899999999998886
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=8.5e-09 Score=103.80 Aligned_cols=60 Identities=17% Similarity=0.091 Sum_probs=27.8
Q ss_pred CCCCcCEEEecCccccccch--hhccCCCcCEEEecCCCCc--cccCcccccccccceeecCcc
Q 038430 352 KLMHLKYLNLSELHIERLPK--TLCELYNLQKLDIRGCRNL--RELPTGIGKLKNMRSLLNGLT 411 (677)
Q Consensus 352 ~l~~L~~L~Ls~~~i~~lp~--~i~~l~~L~~L~L~~~~~l--~~lp~~i~~l~~L~~L~l~~~ 411 (677)
++++|+...|.++.+...+. -...|++++.|||++|-.. ..+-.....|++|+.|+++.|
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~N 182 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSN 182 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccc
Confidence 44555555555555544432 3445555555555554311 111122334555555555554
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.60 E-value=9.4e-09 Score=94.50 Aligned_cols=115 Identities=25% Similarity=0.318 Sum_probs=33.2
Q ss_pred ecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccC-CCCCcCEEEecCccccccchhhccCCCcCEEEecCCCCc
Q 038430 312 FKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVG-KLMHLKYLNLSELHIERLPKTLCELYNLQKLDIRGCRNL 390 (677)
Q Consensus 312 ~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~-~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~l 390 (677)
.+.+...+ .+.+..+++.|++.+ +.+..+ +.++ .+.+|+.|++++|.|+.++ .+..+++|++|++++|+ +
T Consensus 6 ~~~i~~~~-~~~n~~~~~~L~L~~-----n~I~~I-e~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~-I 76 (175)
T PF14580_consen 6 ANMIEQIA-QYNNPVKLRELNLRG-----NQISTI-ENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNR-I 76 (175)
T ss_dssp -------------------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---
T ss_pred cccccccc-ccccccccccccccc-----cccccc-cchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCC-C
Confidence 33444444 344455778888884 445554 3454 5778888888888888774 57778888888888888 7
Q ss_pred cccCccc-ccccccceeecCccCCCcccC--CcCCCCCCCCccCceeeC
Q 038430 391 RELPTGI-GKLKNMRSLLNGLTCSLKYMP--IGISKLTSLRTLDKFAVG 436 (677)
Q Consensus 391 ~~lp~~i-~~l~~L~~L~l~~~~~~~~~p--~~i~~l~~L~~L~l~~~~ 436 (677)
..++..+ ..+++|++|++++|. +..+. ..+..+++|+.|++.++.
T Consensus 77 ~~i~~~l~~~lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 77 SSISEGLDKNLPNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp -S-CHHHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-G
T ss_pred CccccchHHhCCcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCc
Confidence 7776555 357888888888883 33322 123344555555554443
No 32
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=3.2e-09 Score=101.50 Aligned_cols=187 Identities=17% Similarity=0.134 Sum_probs=108.0
Q ss_pred CcCEEEecCCCCcc--ccCcccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCc
Q 038430 378 NLQKLDIRGCRNLR--ELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQL 455 (677)
Q Consensus 378 ~L~~L~L~~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~ 455 (677)
.||+|||+... ++ .+..-+..+.+|+.|.+.++..-..+...|.+-.+
T Consensus 186 Rlq~lDLS~s~-it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~----------------------------- 235 (419)
T KOG2120|consen 186 RLQHLDLSNSV-ITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSN----------------------------- 235 (419)
T ss_pred hhHHhhcchhh-eeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhcccc-----------------------------
Confidence 47777777654 32 23333555666666666666433333333444444
Q ss_pred CCcccccCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhh
Q 038430 456 IRKCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYE 535 (677)
Q Consensus 456 L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (677)
|+.++++.+..+... ....-+.+|+.|..|+|+||+..+
T Consensus 236 L~~lnlsm~sG~t~n--~~~ll~~scs~L~~LNlsWc~l~~--------------------------------------- 274 (419)
T KOG2120|consen 236 LVRLNLSMCSGFTEN--ALQLLLSSCSRLDELNLSWCFLFT--------------------------------------- 274 (419)
T ss_pred ceeeccccccccchh--HHHHHHHhhhhHhhcCchHhhccc---------------------------------------
Confidence 455555554443332 223346678888899999883222
Q ss_pred hhhcchhhHHHHhhhcCCCCCCcEEEEecCCCC----CCChhHhhccCCCeEEEeCCCCCCc--CCCCCCcc-cceeecc
Q 038430 536 ERRRKNEKDEQLLEALQPPLNVEKLWILFNGGN----ILPKWLTSLTNLSDLKLVFCENCEQ--LPPLGKLP-LEKLELC 608 (677)
Q Consensus 536 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~----~lp~~~~~l~~L~~L~l~~c~~~~~--l~~l~~l~-L~~L~l~ 608 (677)
.........+ -++|++|+|+|+.-. .+..-...+++|..|+|++|..++. +..+-+++ |++|.++
T Consensus 275 ------~~Vtv~V~hi--se~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSls 346 (419)
T KOG2120|consen 275 ------EKVTVAVAHI--SETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLS 346 (419)
T ss_pred ------hhhhHHHhhh--chhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehh
Confidence 0111112222 257888888887421 1222223788999999998876653 33366888 9999999
Q ss_pred ccccceEeCCccccCCCCCCCCCCCCCCCcccCCCccceeeeccccc-Cccccc
Q 038430 609 HLKSVKRVGNEFLEIEESEDDPSSSSSSSSVTAFPKVKSLEIKELEE-GNYRIT 661 (677)
Q Consensus 609 ~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~ 661 (677)
.|..| ++..+.. ....|+|..|++.+|-. ..+...
T Consensus 347 RCY~i--~p~~~~~----------------l~s~psl~yLdv~g~vsdt~mel~ 382 (419)
T KOG2120|consen 347 RCYDI--IPETLLE----------------LNSKPSLVYLDVFGCVSDTTMELL 382 (419)
T ss_pred hhcCC--ChHHeee----------------eccCcceEEEEeccccCchHHHHH
Confidence 88755 2222221 25678899999988877 555433
No 33
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.50 E-value=2.2e-08 Score=98.24 Aligned_cols=257 Identities=19% Similarity=0.128 Sum_probs=137.8
Q ss_pred cccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCcc---c-cccchh-------hccCCCcCEEEecCCCC
Q 038430 321 SIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELH---I-ERLPKT-------LCELYNLQKLDIRGCRN 389 (677)
Q Consensus 321 ~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~---i-~~lp~~-------i~~l~~L~~L~L~~~~~ 389 (677)
....+..+..+++++|.+...-...+-+.+.+.++|+.-+++.-- . ..+|+. +-..++|++||||+|-+
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 444566677777776432222222233445555677777666532 1 134432 23456777777777653
Q ss_pred ccccCc----ccccccccceeecCccCCCcccC-CcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccccCc
Q 038430 390 LRELPT----GIGKLKNMRSLLNGLTCSLKYMP-IGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIEGL 464 (677)
Q Consensus 390 l~~lp~----~i~~l~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~ 464 (677)
-..-++ -+..+..|++|.+.+|. ++..- ..++. .|..|. .....++-.+||.+.....
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~--al~~l~--------------~~kk~~~~~~Lrv~i~~rN 167 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGR--ALFELA--------------VNKKAASKPKLRVFICGRN 167 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHH--HHHHHH--------------HHhccCCCcceEEEEeecc
Confidence 333222 24456667777777663 22111 00110 111111 1111223334666555543
Q ss_pred cCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcchhhH
Q 038430 465 SNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKNEKD 544 (677)
Q Consensus 465 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (677)
.--+.........+...+.|+.+.+..|+... ...
T Consensus 168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~---------------------------------------------eG~ 202 (382)
T KOG1909|consen 168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRP---------------------------------------------EGV 202 (382)
T ss_pred ccccccHHHHHHHHHhccccceEEEecccccC---------------------------------------------chh
Confidence 32233334455566777888888888773222 122
Q ss_pred HHHhhhcCCCCCCcEEEEecCCCCC-----CChhHhhccCCCeEEEeCCCCCCcCCC-------CCCcc-cceeeccccc
Q 038430 545 EQLLEALQPPLNVEKLWILFNGGNI-----LPKWLTSLTNLSDLKLVFCENCEQLPP-------LGKLP-LEKLELCHLK 611 (677)
Q Consensus 545 ~~~~~~l~~~~~L~~L~l~~~~~~~-----lp~~~~~l~~L~~L~l~~c~~~~~l~~-------l~~l~-L~~L~l~~~~ 611 (677)
.....++..+++|+.|+|..|.+.. +..-+..+++|+.|++++| .++.=-. -...| |++|.+.++.
T Consensus 203 ~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gNe 281 (382)
T KOG1909|consen 203 TALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC-LLENEGAIAFVDALKESAPSLEVLELAGNE 281 (382)
T ss_pred HHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc-ccccccHHHHHHHHhccCCCCceeccCcch
Confidence 4567778888999999999988753 2223346788999999999 3332111 23467 8888888743
Q ss_pred cceEeCCccccCCCCCCCCCCCCCCCcccCCCccceeeeccccc
Q 038430 612 SVKRVGNEFLEIEESEDDPSSSSSSSSVTAFPKVKSLEIKELEE 655 (677)
Q Consensus 612 ~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 655 (677)
++.=....... ....-|.|.+|.|++|.-
T Consensus 282 -It~da~~~la~--------------~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 282 -ITRDAALALAA--------------CMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred -hHHHHHHHHHH--------------HHhcchhhHHhcCCcccc
Confidence 32211111111 024478888998888764
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.49 E-value=4e-08 Score=94.12 Aligned_cols=79 Identities=20% Similarity=0.151 Sum_probs=47.8
Q ss_pred CCCcCEEEecCccccccchhhccCCCcCEEEecCCCCccccCcccccccccceeecCccCCCcccCCcCCCCCCCCccCc
Q 038430 353 LMHLKYLNLSELHIERLPKTLCELYNLQKLDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDK 432 (677)
Q Consensus 353 l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l 432 (677)
.+.|..+|||+|.|+.+-.++.-++.++.|++++|. +..+.. +..|++|++||+++|. +.++...-.++.++++|.+
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~-i~~v~n-La~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNR-IRTVQN-LAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccc-eeeehh-hhhcccceEeecccch-hHhhhhhHhhhcCEeeeeh
Confidence 345667777777777666666667777777777776 555544 6667777777777762 3333222233444555554
Q ss_pred ee
Q 038430 433 FA 434 (677)
Q Consensus 433 ~~ 434 (677)
..
T Consensus 360 a~ 361 (490)
T KOG1259|consen 360 AQ 361 (490)
T ss_pred hh
Confidence 43
No 35
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.47 E-value=8.6e-09 Score=106.89 Aligned_cols=131 Identities=25% Similarity=0.376 Sum_probs=112.0
Q ss_pred CCceEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcCE
Q 038430 302 GGKVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQK 381 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~ 381 (677)
...+..++++.|++..+|..++.++ |+.|.++ ++.+..+|+.++.+.+|..||.+.|.+..+|+.++++..|+.
T Consensus 120 L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~s-----NNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~ 193 (722)
T KOG0532|consen 120 LEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVS-----NNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRD 193 (722)
T ss_pred hhHHHHhhhccchhhcCChhhhcCc-ceeEEEe-----cCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHH
Confidence 4456778888888888887777776 8899888 677888999999889999999999999999999999999999
Q ss_pred EEecCCCCccccCcccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCC
Q 038430 382 LDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDG 441 (677)
Q Consensus 382 L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~ 441 (677)
|+++.|. +..+|..+..| .|..||++.| .+..+|-.|.+|+.|++|.+-++...+.+
T Consensus 194 l~vrRn~-l~~lp~El~~L-pLi~lDfScN-kis~iPv~fr~m~~Lq~l~LenNPLqSPP 250 (722)
T KOG0532|consen 194 LNVRRNH-LEDLPEELCSL-PLIRLDFSCN-KISYLPVDFRKMRHLQVLQLENNPLQSPP 250 (722)
T ss_pred HHHhhhh-hhhCCHHHhCC-ceeeeecccC-ceeecchhhhhhhhheeeeeccCCCCCCh
Confidence 9999988 88889888855 4888999977 68889999999999999999888776544
No 36
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.42 E-value=1.4e-07 Score=100.92 Aligned_cols=171 Identities=23% Similarity=0.288 Sum_probs=136.3
Q ss_pred CceEEEEEEecCCCcccccccCCC-cccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcCE
Q 038430 303 GKVRHLGLKFKGGASFPMSIHGLN-RLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQK 381 (677)
Q Consensus 303 ~~l~~L~l~~~~~~~~p~~~~~l~-~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~ 381 (677)
..+..+.+..+.+..++....... +|+.|+++ .+.+..+|..++.+++|+.|++++|.+..+|...+.+++|+.
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~-----~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~ 190 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLS-----DNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNN 190 (394)
T ss_pred cceeEEecCCcccccCccccccchhhccccccc-----ccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhh
Confidence 468899999999999987777774 99999998 566778877789999999999999999999988878999999
Q ss_pred EEecCCCCccccCcccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccc
Q 038430 382 LDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGI 461 (677)
Q Consensus 382 L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i 461 (677)
|++++|. +..+|..++.+..|+.|.+++|. ....+..+.++.++..|.+.++.... ....+..+..++.|.+
T Consensus 191 L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n~~~~------~~~~~~~l~~l~~L~~ 262 (394)
T COG4886 191 LDLSGNK-ISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNNKLED------LPESIGNLSNLETLDL 262 (394)
T ss_pred eeccCCc-cccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCCceeee------ccchhccccccceecc
Confidence 9999998 99999977788889999999984 45566778888888888755554331 2566777777888888
Q ss_pred cCccCCCChhHHHHhhccCCcccCceEEEee
Q 038430 462 EGLSNVSHLDEAERLELKNMENLLHLYLWFE 492 (677)
Q Consensus 462 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 492 (677)
++.. +..... +....+|+.|+++.+
T Consensus 263 s~n~----i~~i~~--~~~~~~l~~L~~s~n 287 (394)
T COG4886 263 SNNQ----ISSISS--LGSLTNLRELDLSGN 287 (394)
T ss_pred cccc----cccccc--ccccCccCEEeccCc
Confidence 7632 222212 677789999999876
No 37
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=4.2e-08 Score=98.89 Aligned_cols=156 Identities=14% Similarity=0.036 Sum_probs=92.2
Q ss_pred CCceEEEEEEecCCCccc--ccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchh--hccCC
Q 038430 302 GGKVRHLGLKFKGGASFP--MSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKT--LCELY 377 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~~~p--~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~--i~~l~ 377 (677)
..+++.+++.++.+...+ .-...|++++.|+++.|-+.+ ...+-.-...+++|+.|+|+.|++...-.+ -..+.
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~n--w~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHN--WFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHh--HHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 456777777777766555 356678888888888532111 111223346778888888888876532221 23567
Q ss_pred CcCEEEecCCCCc-cccCcccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcC
Q 038430 378 NLQKLDIRGCRNL-RELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLI 456 (677)
Q Consensus 378 ~L~~L~L~~~~~l-~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L 456 (677)
+|+.|.|+.|... ..+-......++|..|++..|..+.........++.|++|++.++.... .........++.|
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~----~~~~~~~~~l~~L 273 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID----FDQGYKVGTLPGL 273 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc----cccccccccccch
Confidence 7888888888732 1222334556778888888875433333334456677778777766543 2233444555555
Q ss_pred CcccccC
Q 038430 457 RKCGIEG 463 (677)
Q Consensus 457 ~~L~i~~ 463 (677)
+.|+++.
T Consensus 274 ~~Lnls~ 280 (505)
T KOG3207|consen 274 NQLNLSS 280 (505)
T ss_pred hhhhccc
Confidence 5555443
No 38
>PLN03150 hypothetical protein; Provisional
Probab=98.33 E-value=6.4e-07 Score=100.70 Aligned_cols=103 Identities=22% Similarity=0.293 Sum_probs=75.0
Q ss_pred cccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCcccc-ccchhhccCCCcCEEEecCCCCccccCcccccccccce
Q 038430 327 RLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIE-RLPKTLCELYNLQKLDIRGCRNLRELPTGIGKLKNMRS 405 (677)
Q Consensus 327 ~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~ 405 (677)
.++.|+|++ +.....+|..++.+++|+.|+|++|.+. .+|..++.+++|+.|+|++|.....+|..+++|++|++
T Consensus 419 ~v~~L~L~~----n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~ 494 (623)
T PLN03150 419 FIDGLGLDN----QGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRI 494 (623)
T ss_pred EEEEEECCC----CCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCE
Confidence 366777776 3334567777888888888888888876 77777888888888888888755678888888888888
Q ss_pred eecCccCCCcccCCcCCCC-CCCCccCce
Q 038430 406 LLNGLTCSLKYMPIGISKL-TSLRTLDKF 433 (677)
Q Consensus 406 L~l~~~~~~~~~p~~i~~l-~~L~~L~l~ 433 (677)
|++++|...+.+|..++.+ .++..+++.
T Consensus 495 L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~ 523 (623)
T PLN03150 495 LNLNGNSLSGRVPAALGGRLLHRASFNFT 523 (623)
T ss_pred EECcCCcccccCChHHhhccccCceEEec
Confidence 8888887777777776543 234444443
No 39
>PLN03150 hypothetical protein; Provisional
Probab=98.32 E-value=1.2e-06 Score=98.52 Aligned_cols=110 Identities=25% Similarity=0.340 Sum_probs=93.5
Q ss_pred ceEEEEEEecCCC-cccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCcccc-ccchhhccCCCcCE
Q 038430 304 KVRHLGLKFKGGA-SFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIE-RLPKTLCELYNLQK 381 (677)
Q Consensus 304 ~l~~L~l~~~~~~-~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~-~lp~~i~~l~~L~~ 381 (677)
.++.|++.++.+. .+|..+..+++|+.|++++ +.....+|..++.+++|+.|+|++|.+. .+|..++++++|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~----N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~ 494 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSG----NSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRI 494 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCC----CcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCE
Confidence 4788999998884 6788899999999999997 4444678988999999999999999998 78999999999999
Q ss_pred EEecCCCCccccCcccccc-cccceeecCccCCCccc
Q 038430 382 LDIRGCRNLRELPTGIGKL-KNMRSLLNGLTCSLKYM 417 (677)
Q Consensus 382 L~L~~~~~l~~lp~~i~~l-~~L~~L~l~~~~~~~~~ 417 (677)
|+|++|.....+|..++.+ .++..+++.+|..+...
T Consensus 495 L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~ 531 (623)
T PLN03150 495 LNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGI 531 (623)
T ss_pred EECcCCcccccCChHHhhccccCceEEecCCccccCC
Confidence 9999999778999988764 46778888888544333
No 40
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.27 E-value=1.2e-07 Score=93.05 Aligned_cols=187 Identities=17% Similarity=0.124 Sum_probs=108.7
Q ss_pred CCceEEEEEEecCCCc-----ccccccCCCcccEEEeCCCCCCCCCCccCCc-------ccCCCCCcCEEEecCcccc-c
Q 038430 302 GGKVRHLGLKFKGGAS-----FPMSIHGLNRLRTLLIDDESPPNSSLDKIPE-------NVGKLMHLKYLNLSELHIE-R 368 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~~-----~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~-------~~~~l~~L~~L~Ls~~~i~-~ 368 (677)
...+..+.+++|.+.. +-..+.+.+.|+..++++.. .+-....+|+ .+..+++|++||||.|-+. .
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~f-tGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMF-TGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhh-cCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 5678899999998742 33456677789998887532 1222233443 3445679999999999876 2
Q ss_pred cch----hhccCCCcCEEEecCCCCccccC--------------cccccccccceeecCccCCCcccCC-----cCCCCC
Q 038430 369 LPK----TLCELYNLQKLDIRGCRNLRELP--------------TGIGKLKNMRSLLNGLTCSLKYMPI-----GISKLT 425 (677)
Q Consensus 369 lp~----~i~~l~~L~~L~L~~~~~l~~lp--------------~~i~~l~~L~~L~l~~~~~~~~~p~-----~i~~l~ 425 (677)
-++ -++++..|++|.|.+|. ++..- .-++.-++|+++...+| ++...+. .+....
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN-rlen~ga~~~A~~~~~~~ 185 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN-RLENGGATALAEAFQSHP 185 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc-ccccccHHHHHHHHHhcc
Confidence 222 36788999999999997 44321 12344567888888777 4444432 244445
Q ss_pred CCCccCceeeCCCcCCCCcccccccccCCcCCcccccCccCCCChhHHHHhhccCCcccCceEEEee
Q 038430 426 SLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFE 492 (677)
Q Consensus 426 ~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 492 (677)
.|+.+.+..+++..... ......+.++++|+.|++.+..-...........++.+++|+.|+++.|
T Consensus 186 ~leevr~~qN~I~~eG~-~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc 251 (382)
T KOG1909|consen 186 TLEEVRLSQNGIRPEGV-TALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC 251 (382)
T ss_pred ccceEEEecccccCchh-HHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc
Confidence 66666666665543110 1223445555555555555422211222233334455555555555555
No 41
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.25 E-value=3.7e-08 Score=98.76 Aligned_cols=297 Identities=15% Similarity=0.056 Sum_probs=171.5
Q ss_pred CceEEEEEEecCCC---cccccccCCCcccEEEeCCCCCCCCCCcc--CCcccCCCCCcCEEEecCcc-ccc--cchhhc
Q 038430 303 GKVRHLGLKFKGGA---SFPMSIHGLNRLRTLLIDDESPPNSSLDK--IPENVGKLMHLKYLNLSELH-IER--LPKTLC 374 (677)
Q Consensus 303 ~~l~~L~l~~~~~~---~~p~~~~~l~~L~~L~l~~~~l~~~~~~~--lp~~~~~l~~L~~L~Ls~~~-i~~--lp~~i~ 374 (677)
..++.|++.++.-. .+-..-..++++..|.+.+ +..++. +-+--..+++|++|++..|. ++. +-.-..
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~g----c~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~ 213 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYG----CKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAE 213 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhc----ceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHH
Confidence 45667777776432 2223345577777777776 333322 11112567888899888865 552 222345
Q ss_pred cCCCcCEEEecCCCCccc--cCcccccccccceeecCccCCCcc--cCCcCCCCCCCCccCceeeCCCcCCCCccccccc
Q 038430 375 ELYNLQKLDIRGCRNLRE--LPTGIGKLKNMRSLLNGLTCSLKY--MPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECL 450 (677)
Q Consensus 375 ~l~~L~~L~L~~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~--~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L 450 (677)
.+++|++|++++|..+.. +-....+++.|+.+.+.+|...+. +-..-+.+..+..+++..+...++ ......-
T Consensus 214 gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD---~~~~~i~ 290 (483)
T KOG4341|consen 214 GCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTD---EDLWLIA 290 (483)
T ss_pred hhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccc---hHHHHHh
Confidence 688899999998875543 222344566677777777732211 000012222333444333322220 1111222
Q ss_pred ccCCcCCcccccCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccc
Q 038430 451 KNFQLIRKCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVV 530 (677)
Q Consensus 451 ~~l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (677)
.....|+.|+.+++..+.+. ....--.++++|+.|.+..|..
T Consensus 291 ~~c~~lq~l~~s~~t~~~d~--~l~aLg~~~~~L~~l~l~~c~~------------------------------------ 332 (483)
T KOG4341|consen 291 CGCHALQVLCYSSCTDITDE--VLWALGQHCHNLQVLELSGCQQ------------------------------------ 332 (483)
T ss_pred hhhhHhhhhcccCCCCCchH--HHHHHhcCCCceEEEeccccch------------------------------------
Confidence 23556777777776554332 2233345678999999987711
Q ss_pred cchhhhhhcchhhHHHHhhhcCCCCCCcEEEEecCCCCCCChh--H-hhccCCCeEEEeCCCCCCcC--CC----CCCcc
Q 038430 531 DGEYEERRRKNEKDEQLLEALQPPLNVEKLWILFNGGNILPKW--L-TSLTNLSDLKLVFCENCEQL--PP----LGKLP 601 (677)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~--~-~~l~~L~~L~l~~c~~~~~l--~~----l~~l~ 601 (677)
..+..+-.--...+.|+.|++.++....--.. + .+++.|+.|.+++|..+++- .. -..+.
T Consensus 333 -----------fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~ 401 (483)
T KOG4341|consen 333 -----------FSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLE 401 (483)
T ss_pred -----------hhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcccccc
Confidence 11111111123457899999988864322111 1 27899999999999776544 21 23466
Q ss_pred -cceeeccccccceEeCCccccCCCCCCCCCCCCCCCcccCCCccceeeeccccc-CccccccCCccccCCCcccc
Q 038430 602 -LEKLELCHLKSVKRVGNEFLEIEESEDDPSSSSSSSSVTAFPKVKSLEIKELEE-GNYRITRKENISIIPRLSSL 675 (677)
Q Consensus 602 -L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~p~L~~L 675 (677)
|+.|.+++|+.+..-..++. ..+++|+.+++.+|.. ..=++. ....++|+++..
T Consensus 402 ~l~~lEL~n~p~i~d~~Le~l------------------~~c~~Leri~l~~~q~vtk~~i~--~~~~~lp~i~v~ 457 (483)
T KOG4341|consen 402 GLEVLELDNCPLITDATLEHL------------------SICRNLERIELIDCQDVTKEAIS--RFATHLPNIKVH 457 (483)
T ss_pred ccceeeecCCCCchHHHHHHH------------------hhCcccceeeeechhhhhhhhhH--HHHhhCccceeh
Confidence 99999999998877655553 6788999999999988 444444 223378877654
No 42
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=8.8e-08 Score=91.84 Aligned_cols=61 Identities=20% Similarity=0.285 Sum_probs=31.2
Q ss_pred CCCCCcCEEEecCcccc-ccchhhccCCCcCEEEecCCCCccccCc--ccccccccceeecCcc
Q 038430 351 GKLMHLKYLNLSELHIE-RLPKTLCELYNLQKLDIRGCRNLRELPT--GIGKLKNMRSLLNGLT 411 (677)
Q Consensus 351 ~~l~~L~~L~Ls~~~i~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~--~i~~l~~L~~L~l~~~ 411 (677)
..+.+|+.|.+.++.+. .+-..+.+-.+|+.|+|+.|..+.+... -+.+++.|..|++++|
T Consensus 207 s~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc 270 (419)
T KOG2120|consen 207 SQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWC 270 (419)
T ss_pred HHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHh
Confidence 44555555555555554 3334455555555555555554443322 2344555555555555
No 43
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.22 E-value=1.6e-06 Score=65.25 Aligned_cols=56 Identities=29% Similarity=0.468 Sum_probs=35.9
Q ss_pred CcCEEEecCccccccch-hhccCCCcCEEEecCCCCccccCc-ccccccccceeecCcc
Q 038430 355 HLKYLNLSELHIERLPK-TLCELYNLQKLDIRGCRNLRELPT-GIGKLKNMRSLLNGLT 411 (677)
Q Consensus 355 ~L~~L~Ls~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~l~~~ 411 (677)
+|++|++++|.++.+|+ .+.++++|++|++++|. +..+|+ .+..+++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCC
Confidence 56666666666666654 45666677777776666 555543 4566667777776666
No 44
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.19 E-value=3.6e-06 Score=86.93 Aligned_cols=65 Identities=23% Similarity=0.314 Sum_probs=46.6
Q ss_pred CCCCCcCEEEecCccccccchhhccCCCcCEEEecCCCCccccCcccccccccceeecCccCCCcccCCc
Q 038430 351 GKLMHLKYLNLSELHIERLPKTLCELYNLQKLDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIG 420 (677)
Q Consensus 351 ~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~ 420 (677)
..+.+++.|++++|.++.+|. -..+|+.|.+++|..+..+|..+. ++|++|++++|..+..+|.+
T Consensus 49 ~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~s 113 (426)
T PRK15386 49 EEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPES 113 (426)
T ss_pred HHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccccc
Confidence 345778888888888877772 224688888888887777776542 57888888888666666654
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.19 E-value=1.9e-07 Score=100.23 Aligned_cols=123 Identities=24% Similarity=0.274 Sum_probs=77.7
Q ss_pred EEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcCEEEecC
Q 038430 307 HLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKLDIRG 386 (677)
Q Consensus 307 ~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~ 386 (677)
.+.+..+.+..+-..+..+.+|..|++. .+.+..+...+..+.+|++|++++|.|+.+ ..+..++.|+.|++.+
T Consensus 76 ~l~l~~n~i~~~~~~l~~~~~l~~l~l~-----~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~ 149 (414)
T KOG0531|consen 76 ELNLRQNLIAKILNHLSKLKSLEALDLY-----DNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSG 149 (414)
T ss_pred hhccchhhhhhhhcccccccceeeeecc-----ccchhhcccchhhhhcchheeccccccccc-cchhhccchhhheecc
Confidence 3334445544433345666777777777 345555544367778888888888887776 3466677788888888
Q ss_pred CCCccccCcccccccccceeecCccCCCcccCCc-CCCCCCCCccCceeeCCC
Q 038430 387 CRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIG-ISKLTSLRTLDKFAVGGG 438 (677)
Q Consensus 387 ~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L~l~~~~~~ 438 (677)
|. +..++. +..+++|+.+++++|. +..++.. ...+.+++.+.+..+.+.
T Consensus 150 N~-i~~~~~-~~~l~~L~~l~l~~n~-i~~ie~~~~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 150 NL-ISDISG-LESLKSLKLLDLSYNR-IVDIENDELSELISLEELDLGGNSIR 199 (414)
T ss_pred Cc-chhccC-CccchhhhcccCCcch-hhhhhhhhhhhccchHHHhccCCchh
Confidence 77 666655 5557778888888773 4344332 355666666666655443
No 46
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.09 E-value=0.00012 Score=87.44 Aligned_cols=246 Identities=15% Similarity=0.227 Sum_probs=144.4
Q ss_pred CeEEec-CCCCHHHHHHHHHHHhcCCCCC-------------CchHHHHHHHHHHHcC--CccEEEEEECCcCCCccchh
Q 038430 1 MWVCVS-DTFEEISVANAIIEGLGESTSS-------------LSEFQSLMSHIHRSIE--GKKNFLILNDVWDGDYNKWA 64 (677)
Q Consensus 1 ~WV~vs-~~~~~~~i~~~i~~~l~~~~~~-------------~~~~~~~~~~i~~~L~--~kr~LlVlDdvw~~~~~~~~ 64 (677)
+|+++. .+-+...++..++..+...... ..+.......+...+. +.+++|||||+...+.....
T Consensus 60 ~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~ 139 (903)
T PRK04841 60 GWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIH 139 (903)
T ss_pred EEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHH
Confidence 599996 4557777888888777532211 0122233333333443 67899999999766434433
Q ss_pred -hhhhhhcCCCCCcEEEEEcCchH---HHHhcCCCCeEecC----CCChHHHHHHHHHHhhcCCCCCCCcchhHHHHHHH
Q 038430 65 -PFFLCLNHGLHGSKILVTTRNEL---VARMMGSTNIIFIE----QLTEEECWSLFKRLAFFGCSFEDCERLEPIGQKIA 136 (677)
Q Consensus 65 -~l~~~~~~~~~gS~IiiTTR~~~---v~~~~~~~~~~~v~----~L~~~ea~~LF~~~af~~~~~~~~~~~~~~~~~i~ 136 (677)
.+...++....+-++|||||... ...........++. +|+.+|+.++|....-. +--.+...++.
T Consensus 140 ~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~-------~~~~~~~~~l~ 212 (903)
T PRK04841 140 EAMRFFLRHQPENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSS-------PIEAAESSRLC 212 (903)
T ss_pred HHHHHHHHhCCCCeEEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCC-------CCCHHHHHHHH
Confidence 34444444455678989999842 11111123355666 89999999999764311 11223467899
Q ss_pred HHhcCCchHHHHHHHHhccCCC-HHHHHHHHhhhhhhhhh-cCCCccceee-cccccCCCchhhhHHHhhhccCCCCcee
Q 038430 137 RKCKGLPIAAKVIGNLLRSKST-IKDWQRILDSEMWKAEE-IGKGLLTPLL-LSYNDLSSNSMVKRFFSYCAVFPKDYNM 213 (677)
Q Consensus 137 ~~c~GlPLal~~ig~~L~~~~~-~~~w~~~l~~~~~~~~~-~~~~i~~~l~-~Sy~~L~~~~~~k~~fl~~a~fp~~~~i 213 (677)
+.|+|.|+++..++..+..... .... .. .... ....+...+. --++.|++ ..+..+...|+++. +
T Consensus 213 ~~t~Gwp~~l~l~~~~~~~~~~~~~~~---~~----~~~~~~~~~~~~~l~~~v~~~l~~--~~~~~l~~~a~~~~---~ 280 (903)
T PRK04841 213 DDVEGWATALQLIALSARQNNSSLHDS---AR----RLAGINASHLSDYLVEEVLDNVDL--ETRHFLLRCSVLRS---M 280 (903)
T ss_pred HHhCChHHHHHHHHHHHhhCCCchhhh---hH----hhcCCCchhHHHHHHHHHHhcCCH--HHHHHHHHhccccc---C
Confidence 9999999999998877754421 1110 00 0000 0112333222 23678888 89999999999863 2
Q ss_pred cHHHHHHHHHHcCCcCcchhhhHHHhHHHHHHHHHHccCccccccCCCCCeeeEEeChhHHHHHHHHh
Q 038430 214 YKEELISLWMAQGYLNAEEYEEKEMTGEECFNILAARSFFQEFEKNDDDDIMSCKMHDIVHDFAQFVS 281 (677)
Q Consensus 214 ~~~~li~~wi~~g~i~~~~~~~~~~~~~~~~~~L~~~sll~~~~~~~~~~~~~~~mhdli~d~~~~~~ 281 (677)
+. .+...-. | ...+...+..|.+.+++....... + ..|..|++++++.....
T Consensus 281 ~~-~l~~~l~--~----------~~~~~~~L~~l~~~~l~~~~~~~~-~--~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 281 ND-ALIVRVT--G----------EENGQMRLEELERQGLFIQRMDDS-G--EWFRYHPLFASFLRHRC 332 (903)
T ss_pred CH-HHHHHHc--C----------CCcHHHHHHHHHHCCCeeEeecCC-C--CEEehhHHHHHHHHHHH
Confidence 32 2222111 1 112456788999998875322111 1 24778999999987653
No 47
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.07 E-value=5.6e-06 Score=62.26 Aligned_cols=58 Identities=28% Similarity=0.473 Sum_probs=49.6
Q ss_pred CcccEEEeCCCCCCCCCCccCCc-ccCCCCCcCEEEecCccccccch-hhccCCCcCEEEecCCC
Q 038430 326 NRLRTLLIDDESPPNSSLDKIPE-NVGKLMHLKYLNLSELHIERLPK-TLCELYNLQKLDIRGCR 388 (677)
Q Consensus 326 ~~L~~L~l~~~~l~~~~~~~lp~-~~~~l~~L~~L~Ls~~~i~~lp~-~i~~l~~L~~L~L~~~~ 388 (677)
++|++|++++ +.+..+|. .|.++++|++|++++|.++.+|+ .|.++++|++|++++|+
T Consensus 1 p~L~~L~l~~-----n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSN-----NKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETS-----STESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCC-----CCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4789999985 46777774 57899999999999999998876 58999999999999986
No 48
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.01 E-value=8.8e-06 Score=56.14 Aligned_cols=41 Identities=29% Similarity=0.480 Sum_probs=31.1
Q ss_pred CCcCEEEecCccccccchhhccCCCcCEEEecCCCCccccCc
Q 038430 354 MHLKYLNLSELHIERLPKTLCELYNLQKLDIRGCRNLRELPT 395 (677)
Q Consensus 354 ~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~ 395 (677)
++|++|++++|.|+.+|+.+++|++|++|++++|+ +..+|.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCcC
Confidence 46888888888888888778888888888888887 665543
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.88 E-value=5e-07 Score=96.53 Aligned_cols=116 Identities=27% Similarity=0.200 Sum_probs=84.0
Q ss_pred CCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcCEEEecCCCCccccCcc-cccccccceeecCccCCCcccC
Q 038430 340 NSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKLDIRGCRNLRELPTG-IGKLKNMRSLLNGLTCSLKYMP 418 (677)
Q Consensus 340 ~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p 418 (677)
++.+..+-+++.-++.|+.|+|++|+++..- .+..|++|++|||++|. +..+|.. ...+. |+.|.+++|. ++.+
T Consensus 173 yN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~-L~~L~lrnN~-l~tL- 247 (1096)
T KOG1859|consen 173 YNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGCK-LQLLNLRNNA-LTTL- 247 (1096)
T ss_pred hhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccch-hccccccchhhhh-heeeeecccH-HHhh-
Confidence 4445555556667788999999999987663 67888999999999888 8888862 23344 8888888884 4333
Q ss_pred CcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccccCc
Q 038430 419 IGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIEGL 464 (677)
Q Consensus 419 ~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~ 464 (677)
.++.+|.+|+.|++.+|-... ...+.-|..|..|+.|++.+.
T Consensus 248 ~gie~LksL~~LDlsyNll~~----hseL~pLwsLs~L~~L~LeGN 289 (1096)
T KOG1859|consen 248 RGIENLKSLYGLDLSYNLLSE----HSELEPLWSLSSLIVLWLEGN 289 (1096)
T ss_pred hhHHhhhhhhccchhHhhhhc----chhhhHHHHHHHHHHHhhcCC
Confidence 457788888889888776554 445666667777777777764
No 50
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.85 E-value=2.1e-06 Score=92.23 Aligned_cols=212 Identities=26% Similarity=0.287 Sum_probs=136.4
Q ss_pred CCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcCEEEecCCCCccccCccccccccc
Q 038430 324 GLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKLDIRGCRNLRELPTGIGKLKNM 403 (677)
Q Consensus 324 ~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L 403 (677)
.+..++.+.+. .+.+..+-..++.+.+|.+|++.+|.|..+...+..+++|++|++++|. +..+.. +..++.|
T Consensus 70 ~l~~l~~l~l~-----~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~-l~~l~~L 142 (414)
T KOG0531|consen 70 SLTSLKELNLR-----QNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK-ITKLEG-LSTLTLL 142 (414)
T ss_pred HhHhHHhhccc-----hhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccc-cccccc-hhhccch
Confidence 45566666665 3444444344788899999999999998876558889999999999988 777765 7888889
Q ss_pred ceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccc--cccCCcCCcccccCccCCCChhHHHHhhccCC
Q 038430 404 RSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLEC--LKNFQLIRKCGIEGLSNVSHLDEAERLELKNM 481 (677)
Q Consensus 404 ~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~--L~~l~~L~~L~i~~~~~~~~~~~~~~~~l~~~ 481 (677)
+.|++.+| .+..++ ++..+..|+.+++.++.... ... +..+.+++.+.+.+.... .. ..+..+
T Consensus 143 ~~L~l~~N-~i~~~~-~~~~l~~L~~l~l~~n~i~~-------ie~~~~~~~~~l~~l~l~~n~i~----~i--~~~~~~ 207 (414)
T KOG0531|consen 143 KELNLSGN-LISDIS-GLESLKSLKLLDLSYNRIVD-------IENDELSELISLEELDLGGNSIR----EI--EGLDLL 207 (414)
T ss_pred hhheeccC-cchhcc-CCccchhhhcccCCcchhhh-------hhhhhhhhccchHHHhccCCchh----cc--cchHHH
Confidence 99999999 454443 46668888888888776553 222 466666666666553211 10 011112
Q ss_pred cccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcchhhHHHHhhhcCCCC--CCcE
Q 038430 482 ENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKNEKDEQLLEALQPPL--NVEK 559 (677)
Q Consensus 482 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~L~~ 559 (677)
..+..+++..+. ......+.... .|+.
T Consensus 208 ~~l~~~~l~~n~---------------------------------------------------i~~~~~l~~~~~~~L~~ 236 (414)
T KOG0531|consen 208 KKLVLLSLLDNK---------------------------------------------------ISKLEGLNELVMLHLRE 236 (414)
T ss_pred HHHHHhhccccc---------------------------------------------------ceeccCcccchhHHHHH
Confidence 222222333220 01112222223 3899
Q ss_pred EEEecCCCCCCChhHhhccCCCeEEEeCCCCCCcCCCCCCcc-cceeeccc
Q 038430 560 LWILFNGGNILPKWLTSLTNLSDLKLVFCENCEQLPPLGKLP-LEKLELCH 609 (677)
Q Consensus 560 L~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~~~~l~~l~~l~-L~~L~l~~ 609 (677)
+++.++++...+..+..+.++..|++.++ .+..+..+...+ +..+....
T Consensus 237 l~l~~n~i~~~~~~~~~~~~l~~l~~~~n-~~~~~~~~~~~~~~~~~~~~~ 286 (414)
T KOG0531|consen 237 LYLSGNRISRSPEGLENLKNLPVLDLSSN-RISNLEGLERLPKLSELWLND 286 (414)
T ss_pred HhcccCccccccccccccccccccchhhc-cccccccccccchHHHhccCc
Confidence 99999998877666778999999999887 555555454555 55555554
No 51
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.85 E-value=1.2e-06 Score=88.15 Aligned_cols=275 Identities=17% Similarity=0.107 Sum_probs=158.8
Q ss_pred CcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCcc-cc--ccchhhccCCCcCEEEecCCCCccccCc--ccccc
Q 038430 326 NRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELH-IE--RLPKTLCELYNLQKLDIRGCRNLRELPT--GIGKL 400 (677)
Q Consensus 326 ~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~-i~--~lp~~i~~l~~L~~L~L~~~~~l~~lp~--~i~~l 400 (677)
..|+.|.+.++. ......+-..-..+++++.|++.+|. ++ .+-..-..+.+|++|++..|..++..-- ....+
T Consensus 138 g~lk~LSlrG~r--~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC 215 (483)
T KOG4341|consen 138 GFLKELSLRGCR--AVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGC 215 (483)
T ss_pred cccccccccccc--cCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhh
Confidence 357778887632 22222222223678888899999887 55 2222335788999999999886654321 24468
Q ss_pred cccceeecCccCCCcc--cCCcCCCCCCCCccCceeeCCCcCCCCccccccccc----CCcCCcccccCccCCCChhHHH
Q 038430 401 KNMRSLLNGLTCSLKY--MPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKN----FQLIRKCGIEGLSNVSHLDEAE 474 (677)
Q Consensus 401 ~~L~~L~l~~~~~~~~--~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~----l~~L~~L~i~~~~~~~~~~~~~ 474 (677)
++|++|++++|..+.. +-.-...++.++.+...++... ....+.. ...+..+++..+..+.+....
T Consensus 216 ~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~-------~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~- 287 (483)
T KOG4341|consen 216 RKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLEL-------ELEALLKAAAYCLEILKLNLQHCNQLTDEDLW- 287 (483)
T ss_pred hhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccc-------cHHHHHHHhccChHhhccchhhhccccchHHH-
Confidence 9999999999965544 1111233444555544332211 1111111 111233333344333332211
Q ss_pred HhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcchhhHHHHhhhc-CC
Q 038430 475 RLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKNEKDEQLLEAL-QP 553 (677)
Q Consensus 475 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~ 553 (677)
..-.++..|+.|..+.+ .+ ..+..+..+ ..
T Consensus 288 -~i~~~c~~lq~l~~s~~-----------------------------------------------t~-~~d~~l~aLg~~ 318 (483)
T KOG4341|consen 288 -LIACGCHALQVLCYSSC-----------------------------------------------TD-ITDEVLWALGQH 318 (483)
T ss_pred -HHhhhhhHhhhhcccCC-----------------------------------------------CC-CchHHHHHHhcC
Confidence 11234677888877766 11 223344444 34
Q ss_pred CCCCcEEEEecCCCCCC--ChhHh-hccCCCeEEEeCCCCCCc--CCC-CCCcc-cceeeccccccceEeCCccccCCCC
Q 038430 554 PLNVEKLWILFNGGNIL--PKWLT-SLTNLSDLKLVFCENCEQ--LPP-LGKLP-LEKLELCHLKSVKRVGNEFLEIEES 626 (677)
Q Consensus 554 ~~~L~~L~l~~~~~~~l--p~~~~-~l~~L~~L~l~~c~~~~~--l~~-l~~l~-L~~L~l~~~~~l~~i~~~~~~~~~~ 626 (677)
..+|+.|-++++..-+- -..++ +.+.|+.+++.+|..... +-. -...| |+.|.+++|..++.-+...+...
T Consensus 319 ~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~-- 396 (483)
T KOG4341|consen 319 CHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSS-- 396 (483)
T ss_pred CCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhc--
Confidence 58999999998863211 11233 788999999999955432 222 23567 99999999987776643333222
Q ss_pred CCCCCCCCCCCcccCCCccceeeeccccc-CccccccCCccccCCCccccc
Q 038430 627 EDDPSSSSSSSSVTAFPKVKSLEIKELEE-GNYRITRKENISIIPRLSSLR 676 (677)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~p~L~~L~ 676 (677)
..+...|..+.+.+||. ..-.. +....+++|+.++
T Consensus 397 ------------~c~~~~l~~lEL~n~p~i~d~~L---e~l~~c~~Leri~ 432 (483)
T KOG4341|consen 397 ------------SCSLEGLEVLELDNCPLITDATL---EHLSICRNLERIE 432 (483)
T ss_pred ------------cccccccceeeecCCCCchHHHH---HHHhhCcccceee
Confidence 25677899999999998 32211 2333677887654
No 52
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.59 E-value=4.8e-05 Score=52.48 Aligned_cols=42 Identities=33% Similarity=0.333 Sum_probs=33.8
Q ss_pred CCCcEEEEecCCCCCCChhHhhccCCCeEEEeCCCCCCcCCCC
Q 038430 555 LNVEKLWILFNGGNILPKWLTSLTNLSDLKLVFCENCEQLPPL 597 (677)
Q Consensus 555 ~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~~~~l~~l 597 (677)
++|++|++++|.+..+|..+++|++|+.|++++| .+.+++.+
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~~l 42 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDISPL 42 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEGGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCcCC
Confidence 4789999999999999988899999999999999 56665543
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.55 E-value=4.2e-05 Score=86.02 Aligned_cols=133 Identities=23% Similarity=0.114 Sum_probs=76.1
Q ss_pred CCcCEEEecCcc-cc-ccchhhc-cCCCcCEEEecCCCCc-cccCcccccccccceeecCccCCCcccCCcCCCCCCCCc
Q 038430 354 MHLKYLNLSELH-IE-RLPKTLC-ELYNLQKLDIRGCRNL-RELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRT 429 (677)
Q Consensus 354 ~~L~~L~Ls~~~-i~-~lp~~i~-~l~~L~~L~L~~~~~l-~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~ 429 (677)
.+|++|+++|.. +. .-|..++ -||.|+.|.+++-... ..+-.-..++++|..||+++++ +..+ .++++|++|++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCc-HHHhccccHHH
Confidence 356666666644 22 2233333 4666777666653311 1222234456677777777763 3333 55677777777
Q ss_pred cCceeeCCCcCCCCcccccccccCCcCCcccccCccCCCCh--hHHHHhhccCCcccCceEEEee
Q 038430 430 LDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIEGLSNVSHL--DEAERLELKNMENLLHLYLWFE 492 (677)
Q Consensus 430 L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~--~~~~~~~l~~~~~L~~L~l~~~ 492 (677)
|.+.+..... ...+.+|-+|++|+.|+|+.-...... .......-..+++|+.|+.+++
T Consensus 200 L~mrnLe~e~----~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT 260 (699)
T KOG3665|consen 200 LSMRNLEFES----YQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT 260 (699)
T ss_pred HhccCCCCCc----hhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc
Confidence 7777666554 456677777788888888765443332 1112233345788888888866
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.38 E-value=0.00022 Score=73.97 Aligned_cols=80 Identities=24% Similarity=0.459 Sum_probs=47.4
Q ss_pred CceEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCc-cccccchhhccCCCcCE
Q 038430 303 GKVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSEL-HIERLPKTLCELYNLQK 381 (677)
Q Consensus 303 ~~l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~-~i~~lp~~i~~l~~L~~ 381 (677)
..+++|++++|.+..+| .+ .++|+.|.+.+ +..+..+|+.+. .+|++|++++| .+..+|++ |+.
T Consensus 52 ~~l~~L~Is~c~L~sLP-~L--P~sLtsL~Lsn----c~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~s------Le~ 116 (426)
T PRK15386 52 RASGRLYIKDCDIESLP-VL--PNELTEITIEN----CNNLTTLPGSIP--EGLEKLTVCHCPEISGLPES------VRS 116 (426)
T ss_pred cCCCEEEeCCCCCcccC-CC--CCCCcEEEccC----CCCcccCCchhh--hhhhheEccCcccccccccc------cce
Confidence 34557777777777666 21 23577777776 555566665442 57777777777 46666643 455
Q ss_pred EEecCC--CCccccCccc
Q 038430 382 LDIRGC--RNLRELPTGI 397 (677)
Q Consensus 382 L~L~~~--~~l~~lp~~i 397 (677)
|++..+ ..+..+|.++
T Consensus 117 L~L~~n~~~~L~~LPssL 134 (426)
T PRK15386 117 LEIKGSATDSIKNVPNGL 134 (426)
T ss_pred EEeCCCCCcccccCcchH
Confidence 555443 2345556543
No 55
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.31 E-value=0.012 Score=59.27 Aligned_cols=147 Identities=12% Similarity=0.132 Sum_probs=90.4
Q ss_pred cCCCCHHHHHHHHHHHhcCCCCCCch---HHHHHHHHHHHc-CCccEEEEEECCcCCCccchhhhhhhhcCC---CCCcE
Q 038430 6 SDTFEEISVANAIIEGLGESTSSLSE---FQSLMSHIHRSI-EGKKNFLILNDVWDGDYNKWAPFFLCLNHG---LHGSK 78 (677)
Q Consensus 6 s~~~~~~~i~~~i~~~l~~~~~~~~~---~~~~~~~i~~~L-~~kr~LlVlDdvw~~~~~~~~~l~~~~~~~---~~gS~ 78 (677)
....+..++++.|+..++........ ...+...+.... .+++.+||+||+|......++.+....... .....
T Consensus 79 ~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~ 158 (269)
T TIGR03015 79 NTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQ 158 (269)
T ss_pred CCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEE
Confidence 34567889999999998765432221 122333333333 578899999999987655566655332211 22224
Q ss_pred EEEEcCchHHHHhcC----------CCCeEecCCCChHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHhcCCchHHHH
Q 038430 79 ILVTTRNELVARMMG----------STNIIFIEQLTEEECWSLFKRLAFFGCSFEDCERLEPIGQKIARKCKGLPIAAKV 148 (677)
Q Consensus 79 IiiTTR~~~v~~~~~----------~~~~~~v~~L~~~ea~~LF~~~af~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~ 148 (677)
|++|.... ...... ....+++++++.+|..+++...+-.........--.+....|++.|+|.|..|..
T Consensus 159 vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~ 237 (269)
T TIGR03015 159 IFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINI 237 (269)
T ss_pred EEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHH
Confidence 55665433 222211 1236789999999999988876532211111112246788899999999999999
Q ss_pred HHHHh
Q 038430 149 IGNLL 153 (677)
Q Consensus 149 ig~~L 153 (677)
++..+
T Consensus 238 l~~~~ 242 (269)
T TIGR03015 238 LCDRL 242 (269)
T ss_pred HHHHH
Confidence 88766
No 56
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.27 E-value=0.00024 Score=68.77 Aligned_cols=60 Identities=17% Similarity=0.148 Sum_probs=37.5
Q ss_pred hhcCCCCCCcEEEEecCCCCCCC--hhHhhccCCCeEEEeCCCCCCcCCC-------CCCcc-cceeecc
Q 038430 549 EALQPPLNVEKLWILFNGGNILP--KWLTSLTNLSDLKLVFCENCEQLPP-------LGKLP-LEKLELC 608 (677)
Q Consensus 549 ~~l~~~~~L~~L~l~~~~~~~lp--~~~~~l~~L~~L~l~~c~~~~~l~~-------l~~l~-L~~L~l~ 608 (677)
.+..+++.+--|+|..+++.... +.+..++.|+-|.+++++....+.. ++.|+ ++.|+=+
T Consensus 218 k~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 218 KGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred ccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 34455666667777776654221 2244788888999988877766553 34556 6665544
No 57
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.24 E-value=0.00018 Score=68.68 Aligned_cols=93 Identities=16% Similarity=0.206 Sum_probs=60.0
Q ss_pred ccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccc---c-ccc-------hhhccCCCcCEEEecCCC
Q 038430 320 MSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHI---E-RLP-------KTLCELYNLQKLDIRGCR 388 (677)
Q Consensus 320 ~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i---~-~lp-------~~i~~l~~L~~L~L~~~~ 388 (677)
..+..+..+..+++++|.+.......+-..+.+-.+|+..+++.-.. . .+| +.+-++++|++.+|++|-
T Consensus 24 eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA 103 (388)
T COG5238 24 EELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA 103 (388)
T ss_pred HHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence 34445777888888875443333334445566667788877766431 1 333 344578888888888887
Q ss_pred CccccCc----ccccccccceeecCccC
Q 038430 389 NLRELPT----GIGKLKNMRSLLNGLTC 412 (677)
Q Consensus 389 ~l~~lp~----~i~~l~~L~~L~l~~~~ 412 (677)
+....|. .|.+-+.|.||.+++|.
T Consensus 104 fg~~~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 104 FGSEFPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred cCcccchHHHHHHhcCCCceeEEeecCC
Confidence 6655554 35566788888888883
No 58
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.17 E-value=5.4e-05 Score=64.75 Aligned_cols=100 Identities=20% Similarity=0.218 Sum_probs=63.1
Q ss_pred EEEEEecCCCccc---ccccCCCcccEEEeCCCCCCCCCCccCCccc-CCCCCcCEEEecCccccccchhhccCCCcCEE
Q 038430 307 HLGLKFKGGASFP---MSIHGLNRLRTLLIDDESPPNSSLDKIPENV-GKLMHLKYLNLSELHIERLPKTLCELYNLQKL 382 (677)
Q Consensus 307 ~L~l~~~~~~~~p---~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~-~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L 382 (677)
.++++.|.+..++ ..+....+|...+++ ++.+..+|+.| ...+.+..|++++|.|..+|..+..++.|+.|
T Consensus 31 ~ldLssc~lm~i~davy~l~~~~el~~i~ls-----~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 31 FLDLSSCQLMYIADAVYMLSKGYELTKISLS-----DNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSL 105 (177)
T ss_pred hcccccchhhHHHHHHHHHhCCceEEEEecc-----cchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhc
Confidence 3444555444333 233344456666666 45566666665 34446777777777777777777777777777
Q ss_pred EecCCCCccccCcccccccccceeecCccC
Q 038430 383 DIRGCRNLRELPTGIGKLKNMRSLLNGLTC 412 (677)
Q Consensus 383 ~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~ 412 (677)
+++.|+ +...|+-+..|.+|..|+..+|.
T Consensus 106 Nl~~N~-l~~~p~vi~~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 106 NLRFNP-LNAEPRVIAPLIKLDMLDSPENA 134 (177)
T ss_pred ccccCc-cccchHHHHHHHhHHHhcCCCCc
Confidence 777777 66666666667777777777663
No 59
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.15 E-value=7.5e-06 Score=87.84 Aligned_cols=123 Identities=24% Similarity=0.239 Sum_probs=65.8
Q ss_pred ceEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchh-hccCCCcCEE
Q 038430 304 KVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKT-LCELYNLQKL 382 (677)
Q Consensus 304 ~l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~-i~~l~~L~~L 382 (677)
++...+++.|.+..+..++.-++.|+.|+|++ +.+.+.- .+..+++|++|||++|.+..+|.- ...+ +|+.|
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLsh-----Nk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L 237 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSH-----NKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLL 237 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccch-----hhhhhhH-HHHhcccccccccccchhccccccchhhh-hheee
Confidence 44455555555555555555566666666664 2333332 455666666666666666655542 2222 26666
Q ss_pred EecCCCCccccCcccccccccceeecCccCCCcccC--CcCCCCCCCCccCceeeC
Q 038430 383 DIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMP--IGISKLTSLRTLDKFAVG 436 (677)
Q Consensus 383 ~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p--~~i~~l~~L~~L~l~~~~ 436 (677)
++++|. ++.+-. +.+|++|+.||+++|- +.... .-++.|..|+.|++-+|.
T Consensus 238 ~lrnN~-l~tL~g-ie~LksL~~LDlsyNl-l~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 238 NLRNNA-LTTLRG-IENLKSLYGLDLSYNL-LSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred eecccH-HHhhhh-HHhhhhhhccchhHhh-hhcchhhhHHHHHHHHHHHhhcCCc
Confidence 666665 555544 6666666666666662 22111 113444555555555443
No 60
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.12 E-value=8.1e-05 Score=63.72 Aligned_cols=89 Identities=22% Similarity=0.325 Sum_probs=77.5
Q ss_pred CCceEEEEEEecCCCcccccccC-CCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcC
Q 038430 302 GGKVRHLGLKFKGGASFPMSIHG-LNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQ 380 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~~~p~~~~~-l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~ 380 (677)
...+..+++++|.+..+|..|.. ++.+.+|++. ++.+..+|+.+..++.||.|+++.|.+...|..|..|.+|-
T Consensus 52 ~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~-----~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~ 126 (177)
T KOG4579|consen 52 GYELTKISLSDNGFKKFPKKFTIKFPTATTLNLA-----NNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLD 126 (177)
T ss_pred CceEEEEecccchhhhCCHHHhhccchhhhhhcc-----hhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHH
Confidence 44678899999999999976654 4588999998 67788999999999999999999999999999988899999
Q ss_pred EEEecCCCCccccCcc
Q 038430 381 KLDIRGCRNLRELPTG 396 (677)
Q Consensus 381 ~L~L~~~~~l~~lp~~ 396 (677)
.|+..++. ..++|..
T Consensus 127 ~Lds~~na-~~eid~d 141 (177)
T KOG4579|consen 127 MLDSPENA-RAEIDVD 141 (177)
T ss_pred HhcCCCCc-cccCcHH
Confidence 99999887 7777765
No 61
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.95 E-value=0.024 Score=63.31 Aligned_cols=243 Identities=16% Similarity=0.239 Sum_probs=153.0
Q ss_pred CeEEecC-CCCHHHHHHHHHHHhcCCCCCCc-------------hHHHHHHHHHHHcC--CccEEEEEECCcCCCcc-ch
Q 038430 1 MWVCVSD-TFEEISVANAIIEGLGESTSSLS-------------EFQSLMSHIHRSIE--GKKNFLILNDVWDGDYN-KW 63 (677)
Q Consensus 1 ~WV~vs~-~~~~~~i~~~i~~~l~~~~~~~~-------------~~~~~~~~i~~~L~--~kr~LlVlDdvw~~~~~-~~ 63 (677)
.|.+... +-++..+...++..|+...+... +...+...+...+. .++..+||||-.-.... --
T Consensus 68 ~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~ 147 (894)
T COG2909 68 AWLSLDESDNDPARFLSYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALH 147 (894)
T ss_pred eEeecCCccCCHHHHHHHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHH
Confidence 4888866 55788899999998886554433 33335556666555 47899999998654333 33
Q ss_pred hhhhhhhcCCCCCcEEEEEcCchH---HHHhcCCCCeEecC----CCChHHHHHHHHHHhhcCCCCCCCcchhHHHHHHH
Q 038430 64 APFFLCLNHGLHGSKILVTTRNEL---VARMMGSTNIIFIE----QLTEEECWSLFKRLAFFGCSFEDCERLEPIGQKIA 136 (677)
Q Consensus 64 ~~l~~~~~~~~~gS~IiiTTR~~~---v~~~~~~~~~~~v~----~L~~~ea~~LF~~~af~~~~~~~~~~~~~~~~~i~ 136 (677)
..+...+.+...+=.+|||||..- +++.--.+...+|. .++.+|+-++|.... +. +-...-++.+.
T Consensus 148 ~~l~fLl~~~P~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~---~l----~Ld~~~~~~L~ 220 (894)
T COG2909 148 EALRFLLKHAPENLTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRG---SL----PLDAADLKALY 220 (894)
T ss_pred HHHHHHHHhCCCCeEEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcC---CC----CCChHHHHHHH
Confidence 335555566677889999999873 22221123344443 388999999998753 11 22234477889
Q ss_pred HHhcCCchHHHHHHHHhccCCCHHHHHHHHhh---hhhhhhhcCCCccceeecccccCCCchhhhHHHhhhccCCCCcee
Q 038430 137 RKCKGLPIAAKVIGNLLRSKSTIKDWQRILDS---EMWKAEEIGKGLLTPLLLSYNDLSSNSMVKRFFSYCAVFPKDYNM 213 (677)
Q Consensus 137 ~~c~GlPLal~~ig~~L~~~~~~~~w~~~l~~---~~~~~~~~~~~i~~~l~~Sy~~L~~~~~~k~~fl~~a~fp~~~~i 213 (677)
+...|-+-|+..++=.++...+.+.--..+.. ..+++- -.+ -+|.||+ +++..++-+|+++.-
T Consensus 221 ~~teGW~~al~L~aLa~~~~~~~~q~~~~LsG~~~~l~dYL--~ee-------Vld~Lp~--~l~~FLl~~svl~~f--- 286 (894)
T COG2909 221 DRTEGWAAALQLIALALRNNTSAEQSLRGLSGAASHLSDYL--VEE-------VLDRLPP--ELRDFLLQTSVLSRF--- 286 (894)
T ss_pred hhcccHHHHHHHHHHHccCCCcHHHHhhhccchHHHHHHHH--HHH-------HHhcCCH--HHHHHHHHHHhHHHh---
Confidence 99999999999998888744434333332221 001110 011 2467888 899999999888643
Q ss_pred cHHHHHHHHHHcCCcCcchhhhHHHhHHHHHHHHHHccCccccccCCCCCeeeEEeChhHHHHHHHH
Q 038430 214 YKEELISLWMAQGYLNAEEYEEKEMTGEECFNILAARSFFQEFEKNDDDDIMSCKMHDIVHDFAQFV 280 (677)
Q Consensus 214 ~~~~li~~wi~~g~i~~~~~~~~~~~~~~~~~~L~~~sll~~~~~~~~~~~~~~~mhdli~d~~~~~ 280 (677)
-.+++... +.++.+...+++|..++++...-++.. ..|+.|.++.+|...-
T Consensus 287 -~~eL~~~L------------tg~~ng~amLe~L~~~gLFl~~Ldd~~---~WfryH~LFaeFL~~r 337 (894)
T COG2909 287 -NDELCNAL------------TGEENGQAMLEELERRGLFLQRLDDEG---QWFRYHHLFAEFLRQR 337 (894)
T ss_pred -hHHHHHHH------------hcCCcHHHHHHHHHhCCCceeeecCCC---ceeehhHHHHHHHHhh
Confidence 12333322 223456778999999999875433322 2588999998887543
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.79 E-value=0.0007 Score=76.36 Aligned_cols=36 Identities=22% Similarity=0.038 Sum_probs=18.3
Q ss_pred cCCCCCCcEEEEecCCCCCCChhHhhccCCCeEEEeC
Q 038430 551 LQPPLNVEKLWILFNGGNILPKWLTSLTNLSDLKLVF 587 (677)
Q Consensus 551 l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~ 587 (677)
..++++|..||++++++..+ ..+++|+||+.|.+.+
T Consensus 169 c~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrn 204 (699)
T KOG3665|consen 169 CASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRN 204 (699)
T ss_pred hhccCccceeecCCCCccCc-HHHhccccHHHHhccC
Confidence 34445555555555554444 3445555555555543
No 63
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.75 E-value=0.00042 Score=67.13 Aligned_cols=61 Identities=25% Similarity=0.220 Sum_probs=41.4
Q ss_pred CCCCCcCEEEecCcccc---ccchhhccCCCcCEEEecCCCCccccCccc-ccccccceeecCccC
Q 038430 351 GKLMHLKYLNLSELHIE---RLPKTLCELYNLQKLDIRGCRNLRELPTGI-GKLKNMRSLLNGLTC 412 (677)
Q Consensus 351 ~~l~~L~~L~Ls~~~i~---~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i-~~l~~L~~L~l~~~~ 412 (677)
....+++.|||.+|.|+ ++-.-+.+|+.|++|+|+.|+ +...-... ..+.+|+.|.+.++.
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~-L~s~I~~lp~p~~nl~~lVLNgT~ 132 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNS-LSSDIKSLPLPLKNLRVLVLNGTG 132 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCc-CCCccccCcccccceEEEEEcCCC
Confidence 34678899999999887 344446688999999998876 33221112 345678888887764
No 64
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.69 E-value=0.21 Score=53.29 Aligned_cols=252 Identities=13% Similarity=0.111 Sum_probs=135.6
Q ss_pred eEEecCCCCHHHHHHHHHHHhcCCC-C-CCchHHHHHHHHHHHcC--CccEEEEEECCcCCC----ccchhhhhhhhcCC
Q 038430 2 WVCVSDTFEEISVANAIIEGLGEST-S-SLSEFQSLMSHIHRSIE--GKKNFLILNDVWDGD----YNKWAPFFLCLNHG 73 (677)
Q Consensus 2 WV~vs~~~~~~~i~~~i~~~l~~~~-~-~~~~~~~~~~~i~~~L~--~kr~LlVlDdvw~~~----~~~~~~l~~~~~~~ 73 (677)
+|+.....+...++.+|++++.... . ...+.++....+.+.++ ++..+||+|+++... ......+...+...
T Consensus 90 ~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~ 169 (394)
T PRK00411 90 YINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEY 169 (394)
T ss_pred EEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhcc
Confidence 4555566688899999999997632 1 22355667777777775 456899999997642 12223333222222
Q ss_pred CCCcE--EEEEcCchHHHHhcC-------CCCeEecCCCChHHHHHHHHHHhhcC--CCCCCCcchhHHHHHHHHHhcCC
Q 038430 74 LHGSK--ILVTTRNELVARMMG-------STNIIFIEQLTEEECWSLFKRLAFFG--CSFEDCERLEPIGQKIARKCKGL 142 (677)
Q Consensus 74 ~~gS~--IiiTTR~~~v~~~~~-------~~~~~~v~~L~~~ea~~LF~~~af~~--~~~~~~~~~~~~~~~i~~~c~Gl 142 (677)
.+++ ||.++.+..+..... ....+.+++++.++..+++...+-.. ...-..+.++.+++.+....|..
T Consensus 170 -~~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~ 248 (394)
T PRK00411 170 -PGARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDA 248 (394)
T ss_pred -CCCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcH
Confidence 3333 566666554433221 12467899999999999998876221 11112233444444444445667
Q ss_pred chHHHHHHHHh----c-cC--CCHHHHHHHHhhhhhhhhhcCCCccceeecccccCCCchhhhHHHhhhccCCC--Ccee
Q 038430 143 PIAAKVIGNLL----R-SK--STIKDWQRILDSEMWKAEEIGKGLLTPLLLSYNDLSSNSMVKRFFSYCAVFPK--DYNM 213 (677)
Q Consensus 143 PLal~~ig~~L----~-~~--~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~Sy~~L~~~~~~k~~fl~~a~fp~--~~~i 213 (677)
+.|+..+-.+. . +. -+.+..+.+++.... ....-.+..|+. +.|..+.-++...+ ...+
T Consensus 249 r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~~~----------~~~~~~~~~L~~--~~k~~L~ai~~~~~~~~~~~ 316 (394)
T PRK00411 249 RVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKSEI----------VHLSEVLRTLPL--HEKLLLRAIVRLLKKGGDEV 316 (394)
T ss_pred HHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHH----------HHHHHHHhcCCH--HHHHHHHHHHHHHhcCCCcc
Confidence 88877664332 1 11 245566666553210 112234667777 44444433332211 1234
Q ss_pred cHHHHHHHH--HHc--CCcCcchhhhHHHhHHHHHHHHHHccCcccccc--CCCCCeeeEEeCh
Q 038430 214 YKEELISLW--MAQ--GYLNAEEYEEKEMTGEECFNILAARSFFQEFEK--NDDDDIMSCKMHD 271 (677)
Q Consensus 214 ~~~~li~~w--i~~--g~i~~~~~~~~~~~~~~~~~~L~~~sll~~~~~--~~~~~~~~~~mhd 271 (677)
...++.... +++ |.- +. .......+++.|.+.+++..... +..|+.+.+..+-
T Consensus 317 ~~~~i~~~y~~l~~~~~~~-~~----~~~~~~~~l~~L~~~glI~~~~~~~g~~g~~~~~~~~~ 375 (394)
T PRK00411 317 TTGEVYEEYKELCEELGYE-PR----THTRFYEYINKLDMLGIINTRYSGKGGRGRTRLISLSY 375 (394)
T ss_pred cHHHHHHHHHHHHHHcCCC-cC----cHHHHHHHHHHHHhcCCeEEEEecCCCCCCeEEEEecC
Confidence 455544322 221 221 11 11234668999999999986543 3345555565543
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.35 E-value=0.0015 Score=62.58 Aligned_cols=61 Identities=28% Similarity=0.310 Sum_probs=33.2
Q ss_pred cCCCCCcCEEEecCc--ccc-ccchhhccCCCcCEEEecCCCCcc---ccCcccccccccceeecCccC
Q 038430 350 VGKLMHLKYLNLSEL--HIE-RLPKTLCELYNLQKLDIRGCRNLR---ELPTGIGKLKNMRSLLNGLTC 412 (677)
Q Consensus 350 ~~~l~~L~~L~Ls~~--~i~-~lp~~i~~l~~L~~L~L~~~~~l~---~lp~~i~~l~~L~~L~l~~~~ 412 (677)
+..|++|++|.++.| ++. .++...-++++|++|++++|+ ++ .+++ +..+.+|..|++.+|.
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lstl~p-l~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLSTLRP-LKELENLKSLDLFNCS 127 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-cccccccch-hhhhcchhhhhcccCC
Confidence 334566666666666 333 344444455666666666665 32 2222 4455566666666663
No 66
>PF05729 NACHT: NACHT domain
Probab=96.27 E-value=0.028 Score=51.64 Aligned_cols=72 Identities=19% Similarity=0.295 Sum_probs=50.7
Q ss_pred CCccEEEEEECCcCCCccc-------hhh-hhhhhcC-CCCCcEEEEEcCchHH---HHhcCCCCeEecCCCChHHHHHH
Q 038430 44 EGKKNFLILNDVWDGDYNK-------WAP-FFLCLNH-GLHGSKILVTTRNELV---ARMMGSTNIIFIEQLTEEECWSL 111 (677)
Q Consensus 44 ~~kr~LlVlDdvw~~~~~~-------~~~-l~~~~~~-~~~gS~IiiTTR~~~v---~~~~~~~~~~~v~~L~~~ea~~L 111 (677)
+.+++++|+|++++..... +.. +...++. ..++.+||||||.... .........++|++|++++..++
T Consensus 79 ~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 158 (166)
T PF05729_consen 79 KNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQY 158 (166)
T ss_pred cCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHHH
Confidence 4789999999997753211 222 3233333 3568999999998766 33344456899999999999998
Q ss_pred HHHH
Q 038430 112 FKRL 115 (677)
Q Consensus 112 F~~~ 115 (677)
+.++
T Consensus 159 ~~~~ 162 (166)
T PF05729_consen 159 LRKY 162 (166)
T ss_pred HHHH
Confidence 8764
No 67
>PRK06893 DNA replication initiation factor; Validated
Probab=96.25 E-value=0.017 Score=56.49 Aligned_cols=96 Identities=16% Similarity=0.175 Sum_probs=63.2
Q ss_pred EEEEEECCcCCC-ccchhh-hhhhhcCC-CCCcEEEE-EcCc---------hHHHHhcCCCCeEecCCCChHHHHHHHHH
Q 038430 48 NFLILNDVWDGD-YNKWAP-FFLCLNHG-LHGSKILV-TTRN---------ELVARMMGSTNIIFIEQLTEEECWSLFKR 114 (677)
Q Consensus 48 ~LlVlDdvw~~~-~~~~~~-l~~~~~~~-~~gS~Iii-TTR~---------~~v~~~~~~~~~~~v~~L~~~ea~~LF~~ 114 (677)
-+||+||+|... ...|+. +...+... ..|+.||| |++. ..+..++....+++++++++++.++++.+
T Consensus 93 dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~ 172 (229)
T PRK06893 93 DLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQR 172 (229)
T ss_pred CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHH
Confidence 489999998742 245553 33333322 24666655 4543 47777777778999999999999999999
Q ss_pred HhhcCCCCCCCcchhHHHHHHHHHhcCCchHHH
Q 038430 115 LAFFGCSFEDCERLEPIGQKIARKCKGLPIAAK 147 (677)
Q Consensus 115 ~af~~~~~~~~~~~~~~~~~i~~~c~GlPLal~ 147 (677)
.++...- .--+++..-+++++.|-.-++.
T Consensus 173 ~a~~~~l----~l~~~v~~~L~~~~~~d~r~l~ 201 (229)
T PRK06893 173 NAYQRGI----ELSDEVANFLLKRLDRDMHTLF 201 (229)
T ss_pred HHHHcCC----CCCHHHHHHHHHhccCCHHHHH
Confidence 9874432 1223456667777776655443
No 68
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.24 E-value=0.00099 Score=63.81 Aligned_cols=188 Identities=13% Similarity=0.065 Sum_probs=123.1
Q ss_pred CCceEEEEEEecCCCc-----ccccccCCCcccEEEeCCCCCCCCCCccC-------CcccCCCCCcCEEEecCcccc-c
Q 038430 302 GGKVRHLGLKFKGGAS-----FPMSIHGLNRLRTLLIDDESPPNSSLDKI-------PENVGKLMHLKYLNLSELHIE-R 368 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~~-----~p~~~~~l~~L~~L~l~~~~l~~~~~~~l-------p~~~~~l~~L~~L~Ls~~~i~-~ 368 (677)
...+..+++++|.+.. +...+.+-.+|+..++++... +-.-..+ ...+-+|++|+..+||.|.+. .
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ft-gr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFT-GRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhh-cccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 5567788899988742 334566677888888875321 1111122 234567899999999999876 4
Q ss_pred cch----hhccCCCcCEEEecCCCCccccCc--------------ccccccccceeecCccCCCcccCCc-----CCCCC
Q 038430 369 LPK----TLCELYNLQKLDIRGCRNLRELPT--------------GIGKLKNMRSLLNGLTCSLKYMPIG-----ISKLT 425 (677)
Q Consensus 369 lp~----~i~~l~~L~~L~L~~~~~l~~lp~--------------~i~~l~~L~~L~l~~~~~~~~~p~~-----i~~l~ 425 (677)
.|+ -|++-+.|.+|.+++|. ++.+-. ....-|.|+..+...| .+...|.. +..=.
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN-Rlengs~~~~a~~l~sh~ 185 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN-RLENGSKELSAALLESHE 185 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc-hhccCcHHHHHHHHHhhc
Confidence 444 36788899999999887 554322 1234477888888887 45554432 22225
Q ss_pred CCCccCceeeCCCcCCCCcccccccccCCcCCcccccCccCCCChhHHHHhhccCCcccCceEEEee
Q 038430 426 SLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFE 492 (677)
Q Consensus 426 ~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 492 (677)
.|+++.+..+++.........+..+..+++|+.|++....-....+......+...+.|+.|.+..|
T Consensus 186 ~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDC 252 (388)
T COG5238 186 NLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDC 252 (388)
T ss_pred CceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccch
Confidence 7888888888776422223344566677888888887643333344556667788889999999888
No 69
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.24 E-value=0.0057 Score=56.35 Aligned_cols=102 Identities=26% Similarity=0.238 Sum_probs=55.1
Q ss_pred cccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhc-cCCCcCEEEecCCCCccccCc--cccccccc
Q 038430 327 RLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLC-ELYNLQKLDIRGCRNLRELPT--GIGKLKNM 403 (677)
Q Consensus 327 ~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~-~l~~L~~L~L~~~~~l~~lp~--~i~~l~~L 403 (677)
....+++++ +.+..++ .+..+..|..|.+.+|+|+.+-+.+. -+++|++|.|.+|+ +.++-+ .+..+++|
T Consensus 43 ~~d~iDLtd-----Ndl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L 115 (233)
T KOG1644|consen 43 QFDAIDLTD-----NDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKL 115 (233)
T ss_pred ccceecccc-----cchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcc-hhhhhhcchhccCCcc
Confidence 344555553 3444442 35566777777777777776644443 35567777777766 544432 24556666
Q ss_pred ceeecCccCCCcccCC----cCCCCCCCCccCceeeC
Q 038430 404 RSLLNGLTCSLKYMPI----GISKLTSLRTLDKFAVG 436 (677)
Q Consensus 404 ~~L~l~~~~~~~~~p~----~i~~l~~L~~L~l~~~~ 436 (677)
++|.+-+|. +...+. -+..+++|++|+...+.
T Consensus 116 ~~Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 116 EYLTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred ceeeecCCc-hhcccCceeEEEEecCcceEeehhhhh
Confidence 666666653 211111 13455566666555443
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.04 E-value=0.00056 Score=65.69 Aligned_cols=102 Identities=24% Similarity=0.235 Sum_probs=63.2
Q ss_pred CCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcCEEEecCCCCccccCc--ccccccc
Q 038430 325 LNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKLDIRGCRNLRELPT--GIGKLKN 402 (677)
Q Consensus 325 l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~--~i~~l~~ 402 (677)
+.+.+.|++-+ ..+..+ ..+..|+.|++|.||-|+|+++ ..+..+++|+.|+|+.|. +..+.. .+.++++
T Consensus 18 l~~vkKLNcwg-----~~L~DI-sic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~-I~sldEL~YLknlps 89 (388)
T KOG2123|consen 18 LENVKKLNCWG-----CGLDDI-SICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNC-IESLDELEYLKNLPS 89 (388)
T ss_pred HHHhhhhcccC-----CCccHH-HHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcc-cccHHHHHHHhcCch
Confidence 34556666653 233333 2246777888888888888777 346777888888888776 555443 3667777
Q ss_pred cceeecCccCCCcccCCc-----CCCCCCCCccCcee
Q 038430 403 MRSLLNGLTCSLKYMPIG-----ISKLTSLRTLDKFA 434 (677)
Q Consensus 403 L~~L~l~~~~~~~~~p~~-----i~~l~~L~~L~l~~ 434 (677)
|+.|.+..|...+.-+.. +.-|.+|+.|+-..
T Consensus 90 Lr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~ 126 (388)
T KOG2123|consen 90 LRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNVP 126 (388)
T ss_pred hhhHhhccCCcccccchhHHHHHHHHcccchhccCcc
Confidence 788777777555544432 34456666666443
No 71
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.02 E-value=0.011 Score=54.50 Aligned_cols=103 Identities=23% Similarity=0.259 Sum_probs=78.5
Q ss_pred CCceEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccC-CCCCcCEEEecCccccccc--hhhccCCC
Q 038430 302 GGKVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVG-KLMHLKYLNLSELHIERLP--KTLCELYN 378 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~-~l~~L~~L~Ls~~~i~~lp--~~i~~l~~ 378 (677)
......+++.+|.+..++ .|..+++|.+|.+. ++.+..+-+.+. .+++|..|.|.+|+|..+- ..+..++.
T Consensus 41 ~d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~-----nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~ 114 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLN-----NNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPK 114 (233)
T ss_pred ccccceecccccchhhcc-cCCCccccceEEec-----CCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCc
Confidence 345567888888887665 67889999999998 456666655563 4567999999999987542 23667899
Q ss_pred cCEEEecCCCCccccCc----ccccccccceeecCcc
Q 038430 379 LQKLDIRGCRNLRELPT----GIGKLKNMRSLLNGLT 411 (677)
Q Consensus 379 L~~L~L~~~~~l~~lp~----~i~~l~~L~~L~l~~~ 411 (677)
|++|.+-+|+ +..... -+.++++|+.||..+-
T Consensus 115 L~~Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 115 LEYLTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred cceeeecCCc-hhcccCceeEEEEecCcceEeehhhh
Confidence 9999999987 555443 3788999999999865
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.92 E-value=0.0041 Score=35.60 Aligned_cols=21 Identities=29% Similarity=0.659 Sum_probs=12.6
Q ss_pred CcCEEEecCccccccchhhcc
Q 038430 355 HLKYLNLSELHIERLPKTLCE 375 (677)
Q Consensus 355 ~L~~L~Ls~~~i~~lp~~i~~ 375 (677)
+|++|++++|.++.+|++|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 356666666666666665543
No 73
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.86 E-value=0.0018 Score=71.17 Aligned_cols=38 Identities=16% Similarity=0.002 Sum_probs=20.7
Q ss_pred CCcCCcccccCccCCCChhHHHHhhccCCcccCceEEEee
Q 038430 453 FQLIRKCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFE 492 (677)
Q Consensus 453 l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 492 (677)
+++|+.|.+..+..++. .....-...+++|++|++++|
T Consensus 268 c~~L~~L~l~~c~~lt~--~gl~~i~~~~~~L~~L~l~~c 305 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTD--EGLVSIAERCPSLRELDLSGC 305 (482)
T ss_pred CCCcceEccCCCCccch--hHHHHHHHhcCcccEEeeecC
Confidence 44566665554443222 223333455677888888777
No 74
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.74 E-value=0.00066 Score=65.22 Aligned_cols=101 Identities=21% Similarity=0.137 Sum_probs=68.3
Q ss_pred CCceEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccch--hhccCCCc
Q 038430 302 GGKVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPK--TLCELYNL 379 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~--~i~~l~~L 379 (677)
..+++.|++.++++..+. ....|+.|.+|.|+ -+.+..+ +.+..+++|+.|.|+.|.|.++-. -+.++++|
T Consensus 18 l~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLS-----vNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsL 90 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLS-----VNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSL 90 (388)
T ss_pred HHHhhhhcccCCCccHHH-HHHhcccceeEEee-----ccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchh
Confidence 346677777777777664 45567888888887 4455555 346778888888888888775533 36678888
Q ss_pred CEEEecCCCCccccCc-----ccccccccceeecC
Q 038430 380 QKLDIRGCRNLRELPT-----GIGKLKNMRSLLNG 409 (677)
Q Consensus 380 ~~L~L~~~~~l~~lp~-----~i~~l~~L~~L~l~ 409 (677)
++|.|..|+-.+.-+. .+..|++|+.||-.
T Consensus 91 r~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv 125 (388)
T KOG2123|consen 91 RTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNV 125 (388)
T ss_pred hhHhhccCCcccccchhHHHHHHHHcccchhccCc
Confidence 8888887765554443 24567777777644
No 75
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.83 E-value=0.013 Score=56.33 Aligned_cols=84 Identities=21% Similarity=0.272 Sum_probs=58.1
Q ss_pred cCCCCCcCEEEecCccccccchhhccCCCcCEEEecCC--CCccccCcccccccccceeecCccCCCcccCCc---CCCC
Q 038430 350 VGKLMHLKYLNLSELHIERLPKTLCELYNLQKLDIRGC--RNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIG---ISKL 424 (677)
Q Consensus 350 ~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~--~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~---i~~l 424 (677)
...+..|++|++.++.++++ ..+..|++|+.|.++.| +....++.-..++++|++|++++|. +.. +.+ +..+
T Consensus 39 ~d~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~-lstl~pl~~l 115 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKD-LSTLRPLKEL 115 (260)
T ss_pred cccccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-ccc-ccccchhhhh
Confidence 34456777777777777655 34567899999999999 5455666666777999999999994 332 333 3445
Q ss_pred CCCCccCceeeC
Q 038430 425 TSLRTLDKFAVG 436 (677)
Q Consensus 425 ~~L~~L~l~~~~ 436 (677)
.+|..|+++++.
T Consensus 116 ~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 116 ENLKSLDLFNCS 127 (260)
T ss_pred cchhhhhcccCC
Confidence 556666666554
No 76
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=94.32 E-value=0.26 Score=48.03 Aligned_cols=100 Identities=15% Similarity=0.091 Sum_probs=53.0
Q ss_pred CccEEEEEECCcCCC------ccchhhhhhhhcC---CCCCcEEEEEcCchHHHHh--------cCCCCeEecCCCChHH
Q 038430 45 GKKNFLILNDVWDGD------YNKWAPFFLCLNH---GLHGSKILVTTRNELVARM--------MGSTNIIFIEQLTEEE 107 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~------~~~~~~l~~~~~~---~~~gS~IiiTTR~~~v~~~--------~~~~~~~~v~~L~~~e 107 (677)
+++++||+||+.... ..-...+...+.. ..+.+.|+++| ...+... .+....+.+++|+.++
T Consensus 117 ~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S-~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e 195 (234)
T PF01637_consen 117 GKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGS-SDSLMEEFLDDKSPLFGRFSHIELKPLSKEE 195 (234)
T ss_dssp HCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEES-SHHHHHHTT-TTSTTTT---EEEE----HHH
T ss_pred CCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECC-chHHHHHhhcccCccccccceEEEeeCCHHH
Confidence 355999999996543 0111223333333 34445454444 4444443 1223469999999999
Q ss_pred HHHHHHHHhhcCCCCCCCcchhHHHHHHHHHhcCCchHHHH
Q 038430 108 CWSLFKRLAFFGCSFEDCERLEPIGQKIARKCKGLPIAAKV 148 (677)
Q Consensus 108 a~~LF~~~af~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~ 148 (677)
+++++...+-.. ... +.-.+..++|...+||.|..|.-
T Consensus 196 ~~~~~~~~~~~~--~~~-~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 196 AREFLKELFKEL--IKL-PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp HHHHHHHHHHCC---------HHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHh--hcc-cCCHHHHHHHHHHhCCCHHHHhc
Confidence 999998864222 111 12344568899999999988753
No 77
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.22 E-value=0.025 Score=32.36 Aligned_cols=21 Identities=33% Similarity=0.672 Sum_probs=12.6
Q ss_pred CcCEEEecCCCCccccCccccc
Q 038430 378 NLQKLDIRGCRNLRELPTGIGK 399 (677)
Q Consensus 378 ~L~~L~L~~~~~l~~lp~~i~~ 399 (677)
+|++||+++|. ++.+|..+++
T Consensus 1 ~L~~Ldls~n~-l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNN-LTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSE-ESEEGTTTTT
T ss_pred CccEEECCCCc-CEeCChhhcC
Confidence 46666776664 5566665443
No 78
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.02 E-value=0.013 Score=64.53 Aligned_cols=141 Identities=21% Similarity=0.173 Sum_probs=79.0
Q ss_pred cCCCcCEEEecCCCCccc--cCcccccccccceeecCcc-CCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccc
Q 038430 375 ELYNLQKLDIRGCRNLRE--LPTGIGKLKNMRSLLNGLT-CSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLK 451 (677)
Q Consensus 375 ~l~~L~~L~L~~~~~l~~--lp~~i~~l~~L~~L~l~~~-~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~ 451 (677)
.+++|+.|.+.+|..+.. +-.....+++|+.|++++| ......+. .......
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-------------------------~~~~~~~ 240 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPL-------------------------LLLLLLS 240 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchh-------------------------Hhhhhhh
Confidence 478888888888876665 3344667788888888874 11111110 0111222
Q ss_pred cCCcCCcccccCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCcccc
Q 038430 452 NFQLIRKCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVD 531 (677)
Q Consensus 452 ~l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (677)
.+.+|+.++++.+..+.+..- ......+++|+.|.+..|.
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l--~~l~~~c~~L~~L~l~~c~-------------------------------------- 280 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGL--SALASRCPNLETLSLSNCS-------------------------------------- 280 (482)
T ss_pred hcCCcCccchhhhhccCchhH--HHHHhhCCCcceEccCCCC--------------------------------------
Confidence 234455555555443222211 1112237899999977661
Q ss_pred chhhhhhcchhhHHHHhhhcCCCCCCcEEEEecCCCCC---CChhHhhccCCCeEEEeCCC
Q 038430 532 GEYEERRRKNEKDEQLLEALQPPLNVEKLWILFNGGNI---LPKWLTSLTNLSDLKLVFCE 589 (677)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~---lp~~~~~l~~L~~L~l~~c~ 589 (677)
...+..+......+++|++|+++++.... +.....++++|+.|.+..+.
T Consensus 281 ---------~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~ 332 (482)
T KOG1947|consen 281 ---------NLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLN 332 (482)
T ss_pred ---------ccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcC
Confidence 12334444555667889999999887642 23333367777776665543
No 79
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.23 E-value=0.065 Score=28.41 Aligned_cols=15 Identities=33% Similarity=0.521 Sum_probs=5.4
Q ss_pred CcCEEEecCcccccc
Q 038430 355 HLKYLNLSELHIERL 369 (677)
Q Consensus 355 ~L~~L~Ls~~~i~~l 369 (677)
+|+.|++++|.++.+
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 344444444444443
No 80
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=93.09 E-value=2.1 Score=41.47 Aligned_cols=99 Identities=14% Similarity=0.134 Sum_probs=61.1
Q ss_pred EEEEEECCcCCCcc-ch-hhhhhhhcCC-CCCcEEEEEcCch---------HHHHhcCCCCeEecCCCChHHHHHHHHHH
Q 038430 48 NFLILNDVWDGDYN-KW-APFFLCLNHG-LHGSKILVTTRNE---------LVARMMGSTNIIFIEQLTEEECWSLFKRL 115 (677)
Q Consensus 48 ~LlVlDdvw~~~~~-~~-~~l~~~~~~~-~~gS~IiiTTR~~---------~v~~~~~~~~~~~v~~L~~~ea~~LF~~~ 115 (677)
-+||+||++..... .| ..+...+... ..+.+||+||+.. .+...+.....+++++++.++-..++...
T Consensus 92 ~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~ 171 (226)
T TIGR03420 92 DLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSR 171 (226)
T ss_pred CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHH
Confidence 38999999765322 23 3344444321 2344799998743 23333333457999999999999998775
Q ss_pred hhcCCCCCCCcchhHHHHHHHHHhcCCchHHHHHH
Q 038430 116 AFFGCSFEDCERLEPIGQKIARKCKGLPIAAKVIG 150 (677)
Q Consensus 116 af~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~ig 150 (677)
+-.... .--.+....++..+.|.|..+..+-
T Consensus 172 ~~~~~~----~~~~~~l~~L~~~~~gn~r~L~~~l 202 (226)
T TIGR03420 172 AARRGL----QLPDEVADYLLRHGSRDMGSLMALL 202 (226)
T ss_pred HHHcCC----CCCHHHHHHHHHhccCCHHHHHHHH
Confidence 532211 1223456777778888888776553
No 81
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=93.03 E-value=0.15 Score=44.74 Aligned_cols=83 Identities=16% Similarity=0.166 Sum_probs=59.1
Q ss_pred CeEEecCCCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHcCCcc-EEEEEECCcCC-CccchhhhhhhhcCCCCCcE
Q 038430 1 MWVCVSDTFEEISVANAIIEGLGESTSSLSEFQSLMSHIHRSIEGKK-NFLILNDVWDG-DYNKWAPFFLCLNHGLHGSK 78 (677)
Q Consensus 1 ~WV~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~i~~~L~~kr-~LlVlDdvw~~-~~~~~~~l~~~~~~~~~gS~ 78 (677)
+||+++...+...+.+.|+++++.......+..++...+.+.+...+ .+||+|++..- ....++.+..... ..+-+
T Consensus 41 ~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~ 118 (131)
T PF13401_consen 41 IYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIK 118 (131)
T ss_dssp EEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEE
T ss_pred EEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCe
Confidence 47788887799999999999999887665667777788888887554 59999999765 4444455544444 45667
Q ss_pred EEEEcCc
Q 038430 79 ILVTTRN 85 (677)
Q Consensus 79 IiiTTR~ 85 (677)
||+..+.
T Consensus 119 vvl~G~~ 125 (131)
T PF13401_consen 119 VVLVGTP 125 (131)
T ss_dssp EEEEESS
T ss_pred EEEEECh
Confidence 7776654
No 82
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=92.83 E-value=3.4 Score=42.83 Aligned_cols=155 Identities=24% Similarity=0.222 Sum_probs=81.2
Q ss_pred CcEEEEEcCchHHHHhcC--CCCeEecCCCChHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHhcCCchHHHHHHHHh
Q 038430 76 GSKILVTTRNELVARMMG--STNIIFIEQLTEEECWSLFKRLAFFGCSFEDCERLEPIGQKIARKCKGLPIAAKVIGNLL 153 (677)
Q Consensus 76 gS~IiiTTR~~~v~~~~~--~~~~~~v~~L~~~ea~~LF~~~af~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~ig~~L 153 (677)
.+-|..|||...+..... ....+++++++.++..+++.+.+-.... .--.+....|++.|+|.|-.+..+...+
T Consensus 151 ~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~----~~~~~~~~~ia~~~~G~pR~a~~~l~~~ 226 (328)
T PRK00080 151 FTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGV----EIDEEGALEIARRSRGTPRIANRLLRRV 226 (328)
T ss_pred ceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCC----CcCHHHHHHHHHHcCCCchHHHHHHHHH
Confidence 455667777443332211 1346899999999999999987743322 1233568899999999996554444322
Q ss_pred ccCCCHHHHHHHHhhhhhhhhhcCCCccceeecccccCCCchhhhHHHh-hhccCCCCceecHHHHHHHHHHcCCcCcch
Q 038430 154 RSKSTIKDWQRILDSEMWKAEEIGKGLLTPLLLSYNDLSSNSMVKRFFS-YCAVFPKDYNMYKEELISLWMAQGYLNAEE 232 (677)
Q Consensus 154 ~~~~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~Sy~~L~~~~~~k~~fl-~~a~fp~~~~i~~~~li~~wi~~g~i~~~~ 232 (677)
. .|.......... ...-......+...|..|+. ..+..+. ....|..+ .+....+.... |
T Consensus 227 ~------~~a~~~~~~~I~-~~~v~~~l~~~~~~~~~l~~--~~~~~l~~~~~~~~~~-~~~~~~~a~~l---g------ 287 (328)
T PRK00080 227 R------DFAQVKGDGVIT-KEIADKALDMLGVDELGLDE--MDRKYLRTIIEKFGGG-PVGLDTLAAAL---G------ 287 (328)
T ss_pred H------HHHHHcCCCCCC-HHHHHHHHHHhCCCcCCCCH--HHHHHHHHHHHHcCCC-ceeHHHHHHHH---C------
Confidence 1 111110000000 00001112234566677776 4455553 44555554 34444443221 1
Q ss_pred hhhHHHhHHHHHH-HHHHccCccc
Q 038430 233 YEEKEMTGEECFN-ILAARSFFQE 255 (677)
Q Consensus 233 ~~~~~~~~~~~~~-~L~~~sll~~ 255 (677)
.....+++.++ .|++.+++..
T Consensus 288 --~~~~~~~~~~e~~Li~~~li~~ 309 (328)
T PRK00080 288 --EERDTIEDVYEPYLIQQGFIQR 309 (328)
T ss_pred --CCcchHHHHhhHHHHHcCCccc
Confidence 01123444566 8889999864
No 83
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=92.39 E-value=2.3 Score=43.54 Aligned_cols=72 Identities=24% Similarity=0.141 Sum_probs=47.6
Q ss_pred CcEEEEEcCchHHHHhcC--CCCeEecCCCChHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHhcCCchHHHHHHH
Q 038430 76 GSKILVTTRNELVARMMG--STNIIFIEQLTEEECWSLFKRLAFFGCSFEDCERLEPIGQKIARKCKGLPIAAKVIGN 151 (677)
Q Consensus 76 gS~IiiTTR~~~v~~~~~--~~~~~~v~~L~~~ea~~LF~~~af~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~ig~ 151 (677)
.+-|..|||...+....- ....+++++++.++..+++.+.+-.... . --.+....+++.|+|.|-.+..++.
T Consensus 130 ~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~-~---~~~~al~~ia~~~~G~pR~~~~ll~ 203 (305)
T TIGR00635 130 FTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNV-E---IEPEAALEIARRSRGTPRIANRLLR 203 (305)
T ss_pred eEEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCC-C---cCHHHHHHHHHHhCCCcchHHHHHH
Confidence 455666777644333210 1346899999999999999987743222 1 2234567899999999976655554
No 84
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=92.37 E-value=3.6 Score=43.34 Aligned_cols=240 Identities=11% Similarity=0.051 Sum_probs=120.5
Q ss_pred eEEecCCCCHHHHHHHHHHHhc---CCCCC-CchHHHHHHHHHHHcC--CccEEEEEECCcCCC---ccchhhhhhhh-c
Q 038430 2 WVCVSDTFEEISVANAIIEGLG---ESTSS-LSEFQSLMSHIHRSIE--GKKNFLILNDVWDGD---YNKWAPFFLCL-N 71 (677)
Q Consensus 2 WV~vs~~~~~~~i~~~i~~~l~---~~~~~-~~~~~~~~~~i~~~L~--~kr~LlVlDdvw~~~---~~~~~~l~~~~-~ 71 (677)
||+.....+...++..|++++. ...+. ..+.++....+.+.+. +++++||||+++... +.....+.... .
T Consensus 79 ~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~ 158 (365)
T TIGR02928 79 YVNCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSN 158 (365)
T ss_pred EEECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccc
Confidence 5666666778899999999994 22211 1234455555666653 567899999997752 11111222111 1
Q ss_pred CCC--CCcEEEEEcCchHHHHhcC-------CCCeEecCCCChHHHHHHHHHHhhcC-CCCCCCcchhHHHHHHHHHhcC
Q 038430 72 HGL--HGSKILVTTRNELVARMMG-------STNIIFIEQLTEEECWSLFKRLAFFG-CSFEDCERLEPIGQKIARKCKG 141 (677)
Q Consensus 72 ~~~--~gS~IiiTTR~~~v~~~~~-------~~~~~~v~~L~~~ea~~LF~~~af~~-~~~~~~~~~~~~~~~i~~~c~G 141 (677)
... ..-.+|.+|........+. ....+.+++.+.++-.+++...+-.. ......++..+...+++..+.|
T Consensus 159 ~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~G 238 (365)
T TIGR02928 159 GDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHG 238 (365)
T ss_pred cCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcC
Confidence 111 2223455554443322211 12468899999999999998876311 1111223333445556667778
Q ss_pred Cch-HHHHHHHHh----c-c--CCCHHHHHHHHhhhhhhhhhcCCCccceeecccccCCCchhhhHHHhhhccCC--CCc
Q 038430 142 LPI-AAKVIGNLL----R-S--KSTIKDWQRILDSEMWKAEEIGKGLLTPLLLSYNDLSSNSMVKRFFSYCAVFP--KDY 211 (677)
Q Consensus 142 lPL-al~~ig~~L----~-~--~~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~Sy~~L~~~~~~k~~fl~~a~fp--~~~ 211 (677)
.|- |+..+-.+. . + .-+.+..+.+.+.... ....-+...|+. +.+..+..++... .+.
T Consensus 239 d~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~~~----------~~~~~~i~~l~~--~~~~~l~ai~~~~~~~~~ 306 (365)
T TIGR02928 239 DARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKIEK----------DRLLELIRGLPT--HSKLVLLAIANLAANDED 306 (365)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH----------HHHHHHHHcCCH--HHHHHHHHHHHHHhcCCC
Confidence 874 333322211 1 1 1244455554443110 011124456666 4554443332111 233
Q ss_pred eecHHHHHHHHH--HcCC-cCcchhhhHHHhHHHHHHHHHHccCccccc
Q 038430 212 NMYKEELISLWM--AQGY-LNAEEYEEKEMTGEECFNILAARSFFQEFE 257 (677)
Q Consensus 212 ~i~~~~li~~wi--~~g~-i~~~~~~~~~~~~~~~~~~L~~~sll~~~~ 257 (677)
.+...++...+. ++.+ +.+. .......+++.|...+++....
T Consensus 307 ~~~~~~~~~~y~~~~~~~~~~~~----~~~~~~~~l~~l~~~gli~~~~ 351 (365)
T TIGR02928 307 PFRTGEVYEVYKEVCEDIGVDPL----TQRRISDLLNELDMLGLVEAEE 351 (365)
T ss_pred CccHHHHHHHHHHHHHhcCCCCC----cHHHHHHHHHHHHhcCCeEEEE
Confidence 355555555332 1111 1111 2345667788899999987654
No 85
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.99 E-value=0.12 Score=27.40 Aligned_cols=17 Identities=47% Similarity=0.716 Sum_probs=8.9
Q ss_pred CCcCEEEecCCCCccccC
Q 038430 377 YNLQKLDIRGCRNLRELP 394 (677)
Q Consensus 377 ~~L~~L~L~~~~~l~~lp 394 (677)
++|+.|++++|+ +..+|
T Consensus 1 ~~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCCC-CCCCc
Confidence 357777777777 66555
No 86
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.65 E-value=0.017 Score=53.26 Aligned_cols=62 Identities=26% Similarity=0.456 Sum_probs=39.3
Q ss_pred hccCCCeEEEeCCCCCCc--CCCCCCc-c-cceeeccccccceEeCCccccCCCCCCCCCCCCCCCcccCCCccceeeec
Q 038430 576 SLTNLSDLKLVFCENCEQ--LPPLGKL-P-LEKLELCHLKSVKRVGNEFLEIEESEDDPSSSSSSSSVTAFPKVKSLEIK 651 (677)
Q Consensus 576 ~l~~L~~L~l~~c~~~~~--l~~l~~l-~-L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 651 (677)
+++.++.|.+.+|..+.+ +..++++ | |+.|+|++|+.|+.-+.... ..|++|+.|.+.
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L------------------~~lknLr~L~l~ 184 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACL------------------LKLKNLRRLHLY 184 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHH------------------HHhhhhHHHHhc
Confidence 556666666666655532 2234443 4 77788877777776654433 567788888887
Q ss_pred cccc
Q 038430 652 ELEE 655 (677)
Q Consensus 652 ~~~~ 655 (677)
+++.
T Consensus 185 ~l~~ 188 (221)
T KOG3864|consen 185 DLPY 188 (221)
T ss_pred Cchh
Confidence 7776
No 87
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=91.61 E-value=2.7 Score=39.46 Aligned_cols=90 Identities=13% Similarity=0.150 Sum_probs=63.5
Q ss_pred CccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEEEcCch-HHHHhcC-CCCeEecCCCChHHHHHHHHHHhhcCCCC
Q 038430 45 GKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTTRNE-LVARMMG-STNIIFIEQLTEEECWSLFKRLAFFGCSF 122 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiTTR~~-~v~~~~~-~~~~~~v~~L~~~ea~~LF~~~af~~~~~ 122 (677)
+.+-++|+||+...+......+...+......+.+|++|++. .+..... ....+++.+++.++..+.+.+. + .
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~---g--i 169 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ---G--I 169 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc---C--C
Confidence 456689999997766566777888887766666777777654 3322221 2458999999999988877765 1 1
Q ss_pred CCCcchhHHHHHHHHHhcCCch
Q 038430 123 EDCERLEPIGQKIARKCKGLPI 144 (677)
Q Consensus 123 ~~~~~~~~~~~~i~~~c~GlPL 144 (677)
-.+.+..++..++|.|.
T Consensus 170 -----~~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 170 -----SEEAAELLLALAGGSPG 186 (188)
T ss_pred -----CHHHHHHHHHHcCCCcc
Confidence 13457889999999875
No 88
>PRK09087 hypothetical protein; Validated
Probab=91.56 E-value=1.6 Score=42.50 Aligned_cols=93 Identities=11% Similarity=0.080 Sum_probs=60.0
Q ss_pred EEEEECCcCCC--ccchhhhhhhhcCCCCCcEEEEEcC---------chHHHHhcCCCCeEecCCCChHHHHHHHHHHhh
Q 038430 49 FLILNDVWDGD--YNKWAPFFLCLNHGLHGSKILVTTR---------NELVARMMGSTNIIFIEQLTEEECWSLFKRLAF 117 (677)
Q Consensus 49 LlVlDdvw~~~--~~~~~~l~~~~~~~~~gS~IiiTTR---------~~~v~~~~~~~~~~~v~~L~~~ea~~LF~~~af 117 (677)
+|++|||.... +..+..+...... .|..||+|++ ..++..++....++++++++.++-.+++.+.+-
T Consensus 90 ~l~iDDi~~~~~~~~~lf~l~n~~~~--~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~ 167 (226)
T PRK09087 90 PVLIEDIDAGGFDETGLFHLINSVRQ--AGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFA 167 (226)
T ss_pred eEEEECCCCCCCCHHHHHHHHHHHHh--CCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHH
Confidence 78889995432 2222223222222 3667999997 355666666778999999999999999998773
Q ss_pred cCCCCCCCcchhHHHHHHHHHhcCCchHHH
Q 038430 118 FGCSFEDCERLEPIGQKIARKCKGLPIAAK 147 (677)
Q Consensus 118 ~~~~~~~~~~~~~~~~~i~~~c~GlPLal~ 147 (677)
.. ... --+++..-+++++.|-.-++.
T Consensus 168 ~~-~~~---l~~ev~~~La~~~~r~~~~l~ 193 (226)
T PRK09087 168 DR-QLY---VDPHVVYYLVSRMERSLFAAQ 193 (226)
T ss_pred Hc-CCC---CCHHHHHHHHHHhhhhHHHHH
Confidence 32 111 224556667777777666555
No 89
>PF13173 AAA_14: AAA domain
Probab=91.18 E-value=0.64 Score=40.63 Aligned_cols=96 Identities=15% Similarity=0.177 Sum_probs=61.0
Q ss_pred CHHHHHHHHHHHhc--CCC--CCCchHHH-------HHHHHHHHcCCccEEEEEECCcCCCccchhhhhhhhcCCCCCcE
Q 038430 10 EEISVANAIIEGLG--EST--SSLSEFQS-------LMSHIHRSIEGKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSK 78 (677)
Q Consensus 10 ~~~~i~~~i~~~l~--~~~--~~~~~~~~-------~~~~i~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~ 78 (677)
.=..+++++++.+. ... ...++... ..+.+.+....++.+|++|+|... ..|......+-+..+..+
T Consensus 14 GKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iDEiq~~--~~~~~~lk~l~d~~~~~~ 91 (128)
T PF13173_consen 14 GKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPDLLEYFLELIKPGKKYIFIDEIQYL--PDWEDALKFLVDNGPNIK 91 (128)
T ss_pred CHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhhhHHHHHHhhccCCcEEEEehhhhh--ccHHHHHHHHHHhccCce
Confidence 34557777777765 111 11111111 234455555557889999999776 567777776666555678
Q ss_pred EEEEcCchHHHHhc------CCCCeEecCCCChHH
Q 038430 79 ILVTTRNELVARMM------GSTNIIFIEQLTEEE 107 (677)
Q Consensus 79 IiiTTR~~~v~~~~------~~~~~~~v~~L~~~e 107 (677)
|++|+........- |-...++|.||+..|
T Consensus 92 ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E 126 (128)
T PF13173_consen 92 IILTGSSSSLLSKDIAESLAGRVIEIELYPLSFRE 126 (128)
T ss_pred EEEEccchHHHhhcccccCCCeEEEEEECCCCHHH
Confidence 99999988777441 112368899998876
No 90
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=91.08 E-value=0.97 Score=47.36 Aligned_cols=97 Identities=11% Similarity=0.035 Sum_probs=68.0
Q ss_pred CccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEEEcCch-HHHHhcC-CCCeEecCCCChHHHHHHHHHHhhcCCCC
Q 038430 45 GKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTTRNE-LVARMMG-STNIIFIEQLTEEECWSLFKRLAFFGCSF 122 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiTTR~~-~v~~~~~-~~~~~~v~~L~~~ea~~LF~~~af~~~~~ 122 (677)
+++-++|+||+...+......+...+..-..+..+|++|.+. .+..... -...+.+.+++.++..+++..... .
T Consensus 140 ~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~---~- 215 (365)
T PRK07471 140 GGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGP---D- 215 (365)
T ss_pred CCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcc---c-
Confidence 456689999998887777788888887765566677777655 4433332 255899999999999999887531 1
Q ss_pred CCCcchhHHHHHHHHHhcCCchHHHHH
Q 038430 123 EDCERLEPIGQKIARKCKGLPIAAKVI 149 (677)
Q Consensus 123 ~~~~~~~~~~~~i~~~c~GlPLal~~i 149 (677)
..- .....++..++|.|.....+
T Consensus 216 ---~~~-~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 216 ---LPD-DPRAALAALAEGSVGRALRL 238 (365)
T ss_pred ---CCH-HHHHHHHHHcCCCHHHHHHH
Confidence 011 11267899999999866544
No 91
>PRK13342 recombination factor protein RarA; Reviewed
Probab=91.06 E-value=1.5 Score=47.14 Aligned_cols=103 Identities=17% Similarity=0.170 Sum_probs=63.8
Q ss_pred CCccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEEE--cCchH--HHHhc-CCCCeEecCCCChHHHHHHHHHHhhc
Q 038430 44 EGKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVT--TRNEL--VARMM-GSTNIIFIEQLTEEECWSLFKRLAFF 118 (677)
Q Consensus 44 ~~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiT--TR~~~--v~~~~-~~~~~~~v~~L~~~ea~~LF~~~af~ 118 (677)
.+++.+|++|+++..+....+.+...+.. |..++|. |.+.. +.... .-...+++++++.++..+++.+.+-.
T Consensus 90 ~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~ 166 (413)
T PRK13342 90 AGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLLKRALED 166 (413)
T ss_pred cCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHHHHHHHHH
Confidence 35788999999987755555556555543 5555553 43322 11111 11358999999999999999885532
Q ss_pred CCCCCCCcchhHHHHHHHHHhcCCchHHHHHH
Q 038430 119 GCSFEDCERLEPIGQKIARKCKGLPIAAKVIG 150 (677)
Q Consensus 119 ~~~~~~~~~~~~~~~~i~~~c~GlPLal~~ig 150 (677)
..... ..--.+....+++.|+|-+..+..+-
T Consensus 167 ~~~~~-i~i~~~al~~l~~~s~Gd~R~aln~L 197 (413)
T PRK13342 167 KERGL-VELDDEALDALARLANGDARRALNLL 197 (413)
T ss_pred hhcCC-CCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 11100 01224556788999999987765443
No 92
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.77 E-value=0.0056 Score=57.50 Aligned_cols=86 Identities=20% Similarity=0.159 Sum_probs=59.8
Q ss_pred cccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcCEEEecCCCCccccCcccccc
Q 038430 321 SIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKLDIRGCRNLRELPTGIGKL 400 (677)
Q Consensus 321 ~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l 400 (677)
.+......+.|+++. +....+...+..+..|..|+++.+.+..+|..++.+..+..+++..|. ....|.+.+++
T Consensus 37 ei~~~kr~tvld~~s-----~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~~k~ 110 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSS-----NRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQKKE 110 (326)
T ss_pred hhhccceeeeehhhh-----hHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccc-hhhCCcccccc
Confidence 445566677777764 334444455666667777777777777777777777777777777665 77777777777
Q ss_pred cccceeecCccC
Q 038430 401 KNMRSLLNGLTC 412 (677)
Q Consensus 401 ~~L~~L~l~~~~ 412 (677)
+.+++++..++.
T Consensus 111 ~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 111 PHPKKNEQKKTE 122 (326)
T ss_pred CCcchhhhccCc
Confidence 777777777764
No 93
>PRK08727 hypothetical protein; Validated
Probab=89.22 E-value=6.4 Score=38.49 Aligned_cols=96 Identities=11% Similarity=-0.020 Sum_probs=58.5
Q ss_pred cEEEEEECCcCCC-ccchhh-hhhhhcC-CCCCcEEEEEcCc---------hHHHHhcCCCCeEecCCCChHHHHHHHHH
Q 038430 47 KNFLILNDVWDGD-YNKWAP-FFLCLNH-GLHGSKILVTTRN---------ELVARMMGSTNIIFIEQLTEEECWSLFKR 114 (677)
Q Consensus 47 r~LlVlDdvw~~~-~~~~~~-l~~~~~~-~~~gS~IiiTTR~---------~~v~~~~~~~~~~~v~~L~~~ea~~LF~~ 114 (677)
--+||+||+.... ...|.. +...+.. ..+|..||+||+. .++..++.....+++++++.++-.+++.+
T Consensus 94 ~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~ 173 (233)
T PRK08727 94 RSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRE 173 (233)
T ss_pred CCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHH
Confidence 3589999996432 123432 2222222 1246679999973 34444444566899999999999999998
Q ss_pred HhhcCCCCCCCcchhHHHHHHHHHhcCCchHH
Q 038430 115 LAFFGCSFEDCERLEPIGQKIARKCKGLPIAA 146 (677)
Q Consensus 115 ~af~~~~~~~~~~~~~~~~~i~~~c~GlPLal 146 (677)
+|....- .--.+...-+++++.|-.-++
T Consensus 174 ~a~~~~l----~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 174 RAQRRGL----ALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHHcCC----CCCHHHHHHHHHhCCCCHHHH
Confidence 7754221 122345566777776554433
No 94
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=88.91 E-value=3.7 Score=44.99 Aligned_cols=98 Identities=16% Similarity=0.120 Sum_probs=67.6
Q ss_pred CccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEE-EcCchHHHHhcC-CCCeEecCCCChHHHHHHHHHHhhcCCCC
Q 038430 45 GKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILV-TTRNELVARMMG-STNIIFIEQLTEEECWSLFKRLAFFGCSF 122 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~Iii-TTR~~~v~~~~~-~~~~~~v~~L~~~ea~~LF~~~af~~~~~ 122 (677)
+++-++|+|+++..+...+..+...+.......++|+ ||+...+..... ....+++++++.++..+.+...+-....
T Consensus 127 ~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi- 205 (507)
T PRK06645 127 GKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENL- 205 (507)
T ss_pred CCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCC-
Confidence 5667899999998766778888888877655666554 555555554432 2457999999999999999887743221
Q ss_pred CCCcchhHHHHHHHHHhcCCchHH
Q 038430 123 EDCERLEPIGQKIARKCKGLPIAA 146 (677)
Q Consensus 123 ~~~~~~~~~~~~i~~~c~GlPLal 146 (677)
. --.+....|+..++|-+-.+
T Consensus 206 ~---ie~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 206 K---TDIEALRIIAYKSEGSARDA 226 (507)
T ss_pred C---CCHHHHHHHHHHcCCCHHHH
Confidence 1 12344566888888866443
No 95
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.01 E-value=0.026 Score=53.14 Aligned_cols=91 Identities=16% Similarity=0.227 Sum_probs=76.7
Q ss_pred ccCC-cccCCCCCcCEEEecCccccccchhhccCCCcCEEEecCCCCccccCcccccccccceeecCccCCCcccCCcCC
Q 038430 344 DKIP-ENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKLDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGIS 422 (677)
Q Consensus 344 ~~lp-~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~ 422 (677)
..+| ..+........||++.+++..+-..++.++.|..|+++.+. +..+|..++.+..++++++..| .....|.+.+
T Consensus 31 s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq-~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s~~ 108 (326)
T KOG0473|consen 31 SEIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQ-IKFLPKDAKQQRETVNAASHKN-NHSQQPKSQK 108 (326)
T ss_pred cccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhh-HhhChhhHHHHHHHHHHHhhcc-chhhCCcccc
Confidence 3444 34667788999999999988777788889999999999888 8999999999999999999888 5778899999
Q ss_pred CCCCCCccCceeeC
Q 038430 423 KLTSLRTLDKFAVG 436 (677)
Q Consensus 423 ~l~~L~~L~l~~~~ 436 (677)
++..+++++.-.+.
T Consensus 109 k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 109 KEPHPKKNEQKKTE 122 (326)
T ss_pred ccCCcchhhhccCc
Confidence 99999988866543
No 96
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=87.84 E-value=1.7 Score=37.65 Aligned_cols=82 Identities=13% Similarity=0.269 Sum_probs=39.1
Q ss_pred cccCCCcccEEEeCCCCCCCCCCccCCcc-cCCCCCcCEEEecCccccccch-hhccCCCcCEEEecCCCCccccCc-cc
Q 038430 321 SIHGLNRLRTLLIDDESPPNSSLDKIPEN-VGKLMHLKYLNLSELHIERLPK-TLCELYNLQKLDIRGCRNLRELPT-GI 397 (677)
Q Consensus 321 ~~~~l~~L~~L~l~~~~l~~~~~~~lp~~-~~~l~~L~~L~Ls~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~-~i 397 (677)
.|.++++|+.+.+.. .+..++.. |..+.+|+.+.+..+ +..++. .+.++.+|+.+.+.+ . +..++. .+
T Consensus 7 ~F~~~~~l~~i~~~~------~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~-~~~i~~~~F 77 (129)
T PF13306_consen 7 AFYNCSNLESITFPN------TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-N-LKSIGDNAF 77 (129)
T ss_dssp TTTT-TT--EEEETS------T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-T-T-EE-TTTT
T ss_pred HHhCCCCCCEEEECC------CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-c-ccccccccc
Confidence 556666777777642 23444433 556667777777664 555443 356666677777754 2 444443 34
Q ss_pred ccccccceeecCcc
Q 038430 398 GKLKNMRSLLNGLT 411 (677)
Q Consensus 398 ~~l~~L~~L~l~~~ 411 (677)
..+++|+.+.+..+
T Consensus 78 ~~~~~l~~i~~~~~ 91 (129)
T PF13306_consen 78 SNCTNLKNIDIPSN 91 (129)
T ss_dssp TT-TTECEEEETTT
T ss_pred cccccccccccCcc
Confidence 45677777776543
No 97
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=87.79 E-value=4.5 Score=42.21 Aligned_cols=99 Identities=16% Similarity=0.159 Sum_probs=67.1
Q ss_pred CccEEEEEECCcCCCccchhhhhhhhcCCCCCcE-EEEEcCchHHHHhcCC-CCeEecCCCChHHHHHHHHHHhhcCCCC
Q 038430 45 GKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSK-ILVTTRNELVARMMGS-TNIIFIEQLTEEECWSLFKRLAFFGCSF 122 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~-IiiTTR~~~v~~~~~~-~~~~~v~~L~~~ea~~LF~~~af~~~~~ 122 (677)
+++-++|+|++...+......+...+..-..+.. |++|++-..+....-. ...+++++++.++..+++...+... .
T Consensus 140 g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~-~- 217 (351)
T PRK09112 140 GNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQ-G- 217 (351)
T ss_pred CCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhccc-C-
Confidence 4666899999988876777778888876544444 4555554444443322 4589999999999999988743211 1
Q ss_pred CCCcchhHHHHHHHHHhcCCchHHHHH
Q 038430 123 EDCERLEPIGQKIARKCKGLPIAAKVI 149 (677)
Q Consensus 123 ~~~~~~~~~~~~i~~~c~GlPLal~~i 149 (677)
--.+....++..++|.|.....+
T Consensus 218 ----~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 218 ----SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred ----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 11344678899999999866543
No 98
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=87.72 E-value=2.8 Score=43.12 Aligned_cols=95 Identities=15% Similarity=0.121 Sum_probs=66.7
Q ss_pred CccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEEEcCchHHH-HhcC-CCCeEecCCCChHHHHHHHHHHhhcCCCC
Q 038430 45 GKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTTRNELVA-RMMG-STNIIFIEQLTEEECWSLFKRLAFFGCSF 122 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiTTR~~~v~-~~~~-~~~~~~v~~L~~~ea~~LF~~~af~~~~~ 122 (677)
+++=++|+|++...+...+..+...+..-..++.+|++|.+.+.. .... -...+++.+++.++......... .+
T Consensus 92 ~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~l~~~~-~~--- 167 (313)
T PRK05564 92 GDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEIEKFISYKY-ND--- 167 (313)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcCHHHHHHHHHHHh-cC---
Confidence 455577888887766678999999999888899999888765422 2221 14589999999999877665532 11
Q ss_pred CCCcchhHHHHHHHHHhcCCchHHH
Q 038430 123 EDCERLEPIGQKIARKCKGLPIAAK 147 (677)
Q Consensus 123 ~~~~~~~~~~~~i~~~c~GlPLal~ 147 (677)
.-.+.+..++.+++|.|..+.
T Consensus 168 ----~~~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 168 ----IKEEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred ----CCHHHHHHHHHHcCCCHHHHH
Confidence 112336678899999886554
No 99
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=86.70 E-value=0.56 Score=27.86 Aligned_cols=19 Identities=32% Similarity=0.474 Sum_probs=11.2
Q ss_pred CCcCEEEecCccccccchh
Q 038430 354 MHLKYLNLSELHIERLPKT 372 (677)
Q Consensus 354 ~~L~~L~Ls~~~i~~lp~~ 372 (677)
.+|++|+|++|.|+.+|+.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4556666666666666554
No 100
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=86.70 E-value=0.56 Score=27.86 Aligned_cols=19 Identities=32% Similarity=0.474 Sum_probs=11.2
Q ss_pred CCcCEEEecCccccccchh
Q 038430 354 MHLKYLNLSELHIERLPKT 372 (677)
Q Consensus 354 ~~L~~L~Ls~~~i~~lp~~ 372 (677)
.+|++|+|++|.|+.+|+.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4556666666666666554
No 101
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.63 E-value=0.15 Score=47.25 Aligned_cols=91 Identities=16% Similarity=0.280 Sum_probs=54.9
Q ss_pred CCcCEEEecCcccccc-chhhccCCCcCEEEecCCCCccccC-cccc-cccccceeecCccCCCcccCCcCCCCCCCCcc
Q 038430 354 MHLKYLNLSELHIERL-PKTLCELYNLQKLDIRGCRNLRELP-TGIG-KLKNMRSLLNGLTCSLKYMPIGISKLTSLRTL 430 (677)
Q Consensus 354 ~~L~~L~Ls~~~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp-~~i~-~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L 430 (677)
..++.+|.+++.|... -..+.+++.++.|.+.+|..+...- ..++ -.++|+.|++++|..++
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT--------------- 165 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRIT--------------- 165 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeec---------------
Confidence 4577888888887632 2446777788888888877543210 0122 23567777777775443
Q ss_pred CceeeCCCcCCCCcccccccccCCcCCcccccCccCCCChhH
Q 038430 431 DKFAVGGGVDGGSTCRLECLKNFQLIRKCGIEGLSNVSHLDE 472 (677)
Q Consensus 431 ~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~ 472 (677)
...+..|..+++|+.|.+.++..+.+...
T Consensus 166 -------------~~GL~~L~~lknLr~L~l~~l~~v~~~e~ 194 (221)
T KOG3864|consen 166 -------------DGGLACLLKLKNLRRLHLYDLPYVANLEL 194 (221)
T ss_pred -------------hhHHHHHHHhhhhHHHHhcCchhhhchHH
Confidence 33555566666666666666655555443
No 102
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=86.02 E-value=11 Score=43.75 Aligned_cols=150 Identities=8% Similarity=0.045 Sum_probs=80.0
Q ss_pred EEecCCCCHHHHHHHHHHHhcCCCCC-CchHHHHHHHHHHHcC---CccEEEEEECCcCCCccchhhhhhhhcCC-CCCc
Q 038430 3 VCVSDTFEEISVANAIIEGLGESTSS-LSEFQSLMSHIHRSIE---GKKNFLILNDVWDGDYNKWAPFFLCLNHG-LHGS 77 (677)
Q Consensus 3 V~vs~~~~~~~i~~~i~~~l~~~~~~-~~~~~~~~~~i~~~L~---~kr~LlVlDdvw~~~~~~~~~l~~~~~~~-~~gS 77 (677)
|....-.+...++..|.++|.+..+. .....+....+...+. ....+||||+|+......-+.+...+.+. ..++
T Consensus 822 INCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~S 901 (1164)
T PTZ00112 822 INGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINS 901 (1164)
T ss_pred EeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCC
Confidence 44455567888999999999554332 2233444455555542 23458999999754211112233222221 2456
Q ss_pred EEEE--EcCc--------hHHHHhcCCCCeEecCCCChHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHhcCCchHHH
Q 038430 78 KILV--TTRN--------ELVARMMGSTNIIFIEQLTEEECWSLFKRLAFFGCSFEDCERLEPIGQKIARKCKGLPIAAK 147 (677)
Q Consensus 78 ~Iii--TTR~--------~~v~~~~~~~~~~~v~~L~~~ea~~LF~~~af~~~~~~~~~~~~~~~~~i~~~c~GlPLal~ 147 (677)
+|+| +|.+ ..+..+++. ..+..++++.++-.+++...+-.....-....++.+|+.++..-|-.-.||.
T Consensus 902 KLiLIGISNdlDLperLdPRLRSRLg~-eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALD 980 (1164)
T PTZ00112 902 KLVLIAISNTMDLPERLIPRCRSRLAF-GRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQ 980 (1164)
T ss_pred eEEEEEecCchhcchhhhhhhhhcccc-ccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHH
Confidence 6555 3322 122222322 2356699999999999998874322222223444455545544444556665
Q ss_pred HHHHHh
Q 038430 148 VIGNLL 153 (677)
Q Consensus 148 ~ig~~L 153 (677)
++-.+.
T Consensus 981 ILRrAg 986 (1164)
T PTZ00112 981 ICRKAF 986 (1164)
T ss_pred HHHHHH
Confidence 554444
No 103
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=85.96 E-value=2.7 Score=36.41 Aligned_cols=111 Identities=12% Similarity=0.226 Sum_probs=57.1
Q ss_pred ceEEEEEEecCCCccc-ccccCCCcccEEEeCCCCCCCCCCccCCcc-cCCCCCcCEEEecCccccccch-hhccCCCcC
Q 038430 304 KVRHLGLKFKGGASFP-MSIHGLNRLRTLLIDDESPPNSSLDKIPEN-VGKLMHLKYLNLSELHIERLPK-TLCELYNLQ 380 (677)
Q Consensus 304 ~l~~L~l~~~~~~~~p-~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~-~~~l~~L~~L~Ls~~~i~~lp~-~i~~l~~L~ 380 (677)
+++.+.+.. .+..++ ..|..+.+|+.+.+.+ .+..++.. +..+..|+.+.+.. .+..++. .+..+++|+
T Consensus 13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~------~~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPN------NLTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp T--EEEETS-T--EE-TTTTTT-TT-SEEEESS------TTSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred CCCEEEECC-CeeEeChhhcccccccccccccc------cccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 577777663 455555 5788888999999974 25555543 67787899999976 5555544 477799999
Q ss_pred EEEecCCCCccccCc-ccccccccceeecCccCCCcccCC-cCCCCCCC
Q 038430 381 KLDIRGCRNLRELPT-GIGKLKNMRSLLNGLTCSLKYMPI-GISKLTSL 427 (677)
Q Consensus 381 ~L~L~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~-~i~~l~~L 427 (677)
.+++..+ +..++. .+.++ +|+.+.+..+ +..++. .+.++.+|
T Consensus 85 ~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~~--~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 85 NIDIPSN--ITEIGSSSFSNC-NLKEINIPSN--ITKIEENAFKNCTKL 128 (129)
T ss_dssp EEEETTT---BEEHTTTTTT--T--EEE-TTB---SS----GGG-----
T ss_pred ccccCcc--ccEEchhhhcCC-CceEEEECCC--ccEECCccccccccC
Confidence 9999753 555554 46666 8888877653 233332 24444443
No 104
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=84.95 E-value=4.6 Score=41.68 Aligned_cols=96 Identities=10% Similarity=0.068 Sum_probs=65.9
Q ss_pred ccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEEEcCch-HHHHhcCC-CCeEecCCCChHHHHHHHHHHhhcCCCCC
Q 038430 46 KKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTTRNE-LVARMMGS-TNIIFIEQLTEEECWSLFKRLAFFGCSFE 123 (677)
Q Consensus 46 kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiTTR~~-~v~~~~~~-~~~~~v~~L~~~ea~~LF~~~af~~~~~~ 123 (677)
++-.+|+|++...+......+...+..-..+..+|+||.+. .+....-+ .+.+.+.+++.+++.+.+.... ..
T Consensus 106 ~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~-~~---- 180 (328)
T PRK05707 106 GRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQAL-PE---- 180 (328)
T ss_pred CCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhc-cc----
Confidence 34445679999887778888888887765677777777665 44444322 4579999999999988887642 11
Q ss_pred CCcchhHHHHHHHHHhcCCchHHHHH
Q 038430 124 DCERLEPIGQKIARKCKGLPIAAKVI 149 (677)
Q Consensus 124 ~~~~~~~~~~~i~~~c~GlPLal~~i 149 (677)
...+-+..++..++|-|.....+
T Consensus 181 ---~~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 181 ---SDERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred ---CChHHHHHHHHHcCCCHHHHHHH
Confidence 11223556788999999755443
No 105
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=84.08 E-value=12 Score=41.76 Aligned_cols=70 Identities=13% Similarity=0.115 Sum_probs=45.4
Q ss_pred EEEEECCcCCCc-cchhh-hhhhhcCC-CCCcEEEEEcCch---------HHHHhcCCCCeEecCCCChHHHHHHHHHHh
Q 038430 49 FLILNDVWDGDY-NKWAP-FFLCLNHG-LHGSKILVTTRNE---------LVARMMGSTNIIFIEQLTEEECWSLFKRLA 116 (677)
Q Consensus 49 LlVlDdvw~~~~-~~~~~-l~~~~~~~-~~gS~IiiTTR~~---------~v~~~~~~~~~~~v~~L~~~ea~~LF~~~a 116 (677)
+|||||+..... ..|+. +...+... ..|..|||||+.. .+..++...-+++|+..+.+.-.+++.+++
T Consensus 380 LLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka 459 (617)
T PRK14086 380 ILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKA 459 (617)
T ss_pred EEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHH
Confidence 788999976432 22222 22322221 2355688888752 344445556789999999999999999887
Q ss_pred hc
Q 038430 117 FF 118 (677)
Q Consensus 117 f~ 118 (677)
-.
T Consensus 460 ~~ 461 (617)
T PRK14086 460 VQ 461 (617)
T ss_pred Hh
Confidence 43
No 106
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=84.06 E-value=11 Score=40.82 Aligned_cols=102 Identities=17% Similarity=0.081 Sum_probs=63.8
Q ss_pred cEEEEEECCcCCCc-cch-hhhhhhhcCC-CCCcEEEEEcCc---------hHHHHhcCCCCeEecCCCChHHHHHHHHH
Q 038430 47 KNFLILNDVWDGDY-NKW-APFFLCLNHG-LHGSKILVTTRN---------ELVARMMGSTNIIFIEQLTEEECWSLFKR 114 (677)
Q Consensus 47 r~LlVlDdvw~~~~-~~~-~~l~~~~~~~-~~gS~IiiTTR~---------~~v~~~~~~~~~~~v~~L~~~ea~~LF~~ 114 (677)
.-+||+||+..... ..+ +.+...+... ..|..||+|+.. +++..++...-++.+++++.++-.+++.+
T Consensus 207 ~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~ 286 (450)
T PRK14087 207 NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKK 286 (450)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHH
Confidence 34788999965421 122 2233333221 345578888653 34444555566899999999999999999
Q ss_pred HhhcCCCCCCCcchhHHHHHHHHHhcCCchHHHHHH
Q 038430 115 LAFFGCSFEDCERLEPIGQKIARKCKGLPIAAKVIG 150 (677)
Q Consensus 115 ~af~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~ig 150 (677)
++-...- . ..--+++..-|+..+.|.|-.+..+-
T Consensus 287 ~~~~~gl-~-~~l~~evl~~Ia~~~~gd~R~L~gaL 320 (450)
T PRK14087 287 EIKNQNI-K-QEVTEEAINFISNYYSDDVRKIKGSV 320 (450)
T ss_pred HHHhcCC-C-CCCCHHHHHHHHHccCCCHHHHHHHH
Confidence 8732211 0 02234667788999999988776444
No 107
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=83.35 E-value=6.7 Score=41.60 Aligned_cols=96 Identities=10% Similarity=0.059 Sum_probs=65.0
Q ss_pred CccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEEEcCch-HHHHhcC-CCCeEecCCCChHHHHHHHHHHhhcCCCC
Q 038430 45 GKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTTRNE-LVARMMG-STNIIFIEQLTEEECWSLFKRLAFFGCSF 122 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiTTR~~-~v~~~~~-~~~~~~v~~L~~~ea~~LF~~~af~~~~~ 122 (677)
+++-++|+|++...+......+...+.....+..+|++|.+. .+...+- -...+.+++++.++..+.+.... .
T Consensus 116 ~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~----~- 190 (394)
T PRK07940 116 GRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRD----G- 190 (394)
T ss_pred CCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhc----C-
Confidence 344578889998876666677877777666667666666654 4443332 24689999999999988876432 1
Q ss_pred CCCcchhHHHHHHHHHhcCCchHHHHH
Q 038430 123 EDCERLEPIGQKIARKCKGLPIAAKVI 149 (677)
Q Consensus 123 ~~~~~~~~~~~~i~~~c~GlPLal~~i 149 (677)
.-.+.+..++..++|-|.....+
T Consensus 191 ----~~~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 191 ----VDPETARRAARASQGHIGRARRL 213 (394)
T ss_pred ----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 11244677899999998654433
No 108
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=83.26 E-value=5.4 Score=45.38 Aligned_cols=100 Identities=11% Similarity=0.039 Sum_probs=68.0
Q ss_pred CccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEEEcCchHHH-HhcC-CCCeEecCCCChHHHHHHHHHHhhcCCCC
Q 038430 45 GKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTTRNELVA-RMMG-STNIIFIEQLTEEECWSLFKRLAFFGCSF 122 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiTTR~~~v~-~~~~-~~~~~~v~~L~~~ea~~LF~~~af~~~~~ 122 (677)
++.-++|||+|...+...+..+...+..-....++|+||++.+-. ..+- -...|.++.++.++..+.+.+.+-.. ..
T Consensus 118 gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~E-gI 196 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEE-RI 196 (830)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHc-CC
Confidence 344578899998877677888888887766677888877765432 2221 14589999999999998888765322 21
Q ss_pred CCCcchhHHHHHHHHHhcCCc-hHHHH
Q 038430 123 EDCERLEPIGQKIARKCKGLP-IAAKV 148 (677)
Q Consensus 123 ~~~~~~~~~~~~i~~~c~GlP-Lal~~ 148 (677)
. --.+....|++.++|-. -||..
T Consensus 197 ~---id~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 197 A---FEPQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred C---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 1 22345677888998854 45544
No 109
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=82.65 E-value=8.8 Score=43.45 Aligned_cols=114 Identities=18% Similarity=0.086 Sum_probs=74.3
Q ss_pred HHHHHHHHcCCccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEE--EcCchHHHH-hc-CCCCeEecCCCChHHHHH
Q 038430 35 LMSHIHRSIEGKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILV--TTRNELVAR-MM-GSTNIIFIEQLTEEECWS 110 (677)
Q Consensus 35 ~~~~i~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~Iii--TTR~~~v~~-~~-~~~~~~~v~~L~~~ea~~ 110 (677)
.+..+.+.+++++++++-|+.|..+...|..+...+....+...|+| ||++..... .. .-...+.+.+++.+|-++
T Consensus 281 ~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~ 360 (615)
T TIGR02903 281 LQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIAL 360 (615)
T ss_pred HHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHH
Confidence 46788888889999999888877666678888777776666666666 666443211 11 112367889999999999
Q ss_pred HHHHHhhcCCCCCCCcchhHHHHHHHHHhcCCchHHHHHHHH
Q 038430 111 LFKRLAFFGCSFEDCERLEPIGQKIARKCKGLPIAAKVIGNL 152 (677)
Q Consensus 111 LF~~~af~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~ig~~ 152 (677)
++.+.+-... ... -.++...|++++..-+-|+..++.+
T Consensus 361 Il~~~a~~~~-v~l---s~eal~~L~~ys~~gRraln~L~~~ 398 (615)
T TIGR02903 361 IVLNAAEKIN-VHL---AAGVEELIARYTIEGRKAVNILADV 398 (615)
T ss_pred HHHHHHHHcC-CCC---CHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 9998663211 111 1344555666665556666666544
No 110
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=82.10 E-value=1 Score=26.67 Aligned_cols=20 Identities=45% Similarity=0.752 Sum_probs=12.9
Q ss_pred CCCcCEEEecCCCCccccCcc
Q 038430 376 LYNLQKLDIRGCRNLRELPTG 396 (677)
Q Consensus 376 l~~L~~L~L~~~~~l~~lp~~ 396 (677)
+++|++|+|++|. +..+|..
T Consensus 1 L~~L~~L~L~~N~-l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQ-LSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCc-CCcCCHH
Confidence 3566777777766 6666653
No 111
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=82.10 E-value=1 Score=26.67 Aligned_cols=20 Identities=45% Similarity=0.752 Sum_probs=12.9
Q ss_pred CCCcCEEEecCCCCccccCcc
Q 038430 376 LYNLQKLDIRGCRNLRELPTG 396 (677)
Q Consensus 376 l~~L~~L~L~~~~~l~~lp~~ 396 (677)
+++|++|+|++|. +..+|..
T Consensus 1 L~~L~~L~L~~N~-l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQ-LSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCc-CCcCCHH
Confidence 3566777777766 6666653
No 112
>PRK06620 hypothetical protein; Validated
Probab=82.03 E-value=7.8 Score=37.28 Aligned_cols=89 Identities=13% Similarity=0.033 Sum_probs=52.1
Q ss_pred EEEEEECCcCCCccchhhhhhhhcCC-CCCcEEEEEcCch-------HHHHhcCCCCeEecCCCChHHHHHHHHHHhhcC
Q 038430 48 NFLILNDVWDGDYNKWAPFFLCLNHG-LHGSKILVTTRNE-------LVARMMGSTNIIFIEQLTEEECWSLFKRLAFFG 119 (677)
Q Consensus 48 ~LlVlDdvw~~~~~~~~~l~~~~~~~-~~gS~IiiTTR~~-------~v~~~~~~~~~~~v~~L~~~ea~~LF~~~af~~ 119 (677)
-++++|||....+ ..+...+... ..|..||+|++.. ++..++...-+++++++++++-.++..+.+-..
T Consensus 87 d~lliDdi~~~~~---~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~ 163 (214)
T PRK06620 87 NAFIIEDIENWQE---PALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS 163 (214)
T ss_pred CEEEEeccccchH---HHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc
Confidence 4788899953211 1222222211 3467899999843 344455556689999999999888887765321
Q ss_pred CCCCCCcchhHHHHHHHHHhcCCc
Q 038430 120 CSFEDCERLEPIGQKIARKCKGLP 143 (677)
Q Consensus 120 ~~~~~~~~~~~~~~~i~~~c~GlP 143 (677)
... --+++..-+++++.|--
T Consensus 164 -~l~---l~~ev~~~L~~~~~~d~ 183 (214)
T PRK06620 164 -SVT---ISRQIIDFLLVNLPREY 183 (214)
T ss_pred -CCC---CCHHHHHHHHHHccCCH
Confidence 111 12344555666665543
No 113
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.99 E-value=15 Score=40.46 Aligned_cols=98 Identities=21% Similarity=0.165 Sum_probs=66.4
Q ss_pred CccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEEEcC-chHHHHhcCC-CCeEecCCCChHHHHHHHHHHhhcCCCC
Q 038430 45 GKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTTR-NELVARMMGS-TNIIFIEQLTEEECWSLFKRLAFFGCSF 122 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiTTR-~~~v~~~~~~-~~~~~v~~L~~~ea~~LF~~~af~~~~~ 122 (677)
+++-++|+|+++..+...+..+...+........+|++|. ...+...+.. ...|++.+++.++..+.+.+.+-....
T Consensus 115 ~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi- 193 (504)
T PRK14963 115 GGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGR- 193 (504)
T ss_pred CCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCC-
Confidence 4566899999987765677788888876555555555554 3343333222 458999999999999999887643322
Q ss_pred CCCcchhHHHHHHHHHhcCCchHH
Q 038430 123 EDCERLEPIGQKIARKCKGLPIAA 146 (677)
Q Consensus 123 ~~~~~~~~~~~~i~~~c~GlPLal 146 (677)
..-.+....|++.++|.+--+
T Consensus 194 ---~i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 194 ---EAEPEALQLVARLADGAMRDA 214 (504)
T ss_pred ---CCCHHHHHHHHHHcCCCHHHH
Confidence 112345677899999987544
No 114
>PRK08084 DNA replication initiation factor; Provisional
Probab=81.80 E-value=9.2 Score=37.41 Aligned_cols=96 Identities=17% Similarity=0.167 Sum_probs=58.1
Q ss_pred EEEEEECCcCCC-ccchhhh-hhhhcCC-CCC-cEEEEEcCch---------HHHHhcCCCCeEecCCCChHHHHHHHHH
Q 038430 48 NFLILNDVWDGD-YNKWAPF-FLCLNHG-LHG-SKILVTTRNE---------LVARMMGSTNIIFIEQLTEEECWSLFKR 114 (677)
Q Consensus 48 ~LlVlDdvw~~~-~~~~~~l-~~~~~~~-~~g-S~IiiTTR~~---------~v~~~~~~~~~~~v~~L~~~ea~~LF~~ 114 (677)
-+|++|||.... ..+|+.. ...+... ..| .++|+||+.. ++..++....+++++++++++-.+++.+
T Consensus 99 dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~ 178 (235)
T PRK08084 99 SLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQL 178 (235)
T ss_pred CEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHH
Confidence 378899996532 1344432 2222211 123 3699999744 5555666677999999999999999888
Q ss_pred HhhcCCCCCCCcchhHHHHHHHHHhcCCchHHH
Q 038430 115 LAFFGCSFEDCERLEPIGQKIARKCKGLPIAAK 147 (677)
Q Consensus 115 ~af~~~~~~~~~~~~~~~~~i~~~c~GlPLal~ 147 (677)
+|-... . .--+++..-+++++.|-.-++.
T Consensus 179 ~a~~~~-~---~l~~~v~~~L~~~~~~d~r~l~ 207 (235)
T PRK08084 179 RARLRG-F---ELPEDVGRFLLKRLDREMRTLF 207 (235)
T ss_pred HHHHcC-C---CCCHHHHHHHHHhhcCCHHHHH
Confidence 664321 1 1223456667777766544443
No 115
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.64 E-value=8.4 Score=43.14 Aligned_cols=101 Identities=14% Similarity=0.076 Sum_probs=67.6
Q ss_pred CccEEEEEECCcCCCccchhhhhhhhcCCCCCcE-EEEEcCchHHHHhcCC-CCeEecCCCChHHHHHHHHHHhhcCCCC
Q 038430 45 GKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSK-ILVTTRNELVARMMGS-TNIIFIEQLTEEECWSLFKRLAFFGCSF 122 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~-IiiTTR~~~v~~~~~~-~~~~~v~~L~~~ea~~LF~~~af~~~~~ 122 (677)
++.-++|+|+|...+...+..+...+..-....+ |++||....+...+-+ ...|.++.++.++..+.+.+.+-.. ..
T Consensus 123 gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~E-gi 201 (700)
T PRK12323 123 GRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEE-GI 201 (700)
T ss_pred CCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHc-CC
Confidence 4556899999988877778888888876544555 5555555555544322 4589999999999988888765321 11
Q ss_pred CCCcchhHHHHHHHHHhcCCchHHHHH
Q 038430 123 EDCERLEPIGQKIARKCKGLPIAAKVI 149 (677)
Q Consensus 123 ~~~~~~~~~~~~i~~~c~GlPLal~~i 149 (677)
. .-.+....|++.++|.|.....+
T Consensus 202 ~---~d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 202 A---HEVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred C---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 1 12234577899999988654433
No 116
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=81.41 E-value=25 Score=34.07 Aligned_cols=102 Identities=14% Similarity=0.125 Sum_probs=59.5
Q ss_pred EEEEEECCcCCCccchhhhhhhhcCC-CCCc-EEEEEcCchHH--------HHhcCCCCeEecCCCChHHHHHHHHHHhh
Q 038430 48 NFLILNDVWDGDYNKWAPFFLCLNHG-LHGS-KILVTTRNELV--------ARMMGSTNIIFIEQLTEEECWSLFKRLAF 117 (677)
Q Consensus 48 ~LlVlDdvw~~~~~~~~~l~~~~~~~-~~gS-~IiiTTR~~~v--------~~~~~~~~~~~v~~L~~~ea~~LF~~~af 117 (677)
-+||+|||...+...-..+...+... ..|. .||+|++.... ...+.....++++++++++-..++.+.+-
T Consensus 92 ~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~ 171 (227)
T PRK08903 92 ELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAA 171 (227)
T ss_pred CEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHH
Confidence 47889999654323333344444322 2344 46777664322 22333345899999999876666665432
Q ss_pred cCCCCCCCcchhHHHHHHHHHhcCCchHHHHHHHHh
Q 038430 118 FGCSFEDCERLEPIGQKIARKCKGLPIAAKVIGNLL 153 (677)
Q Consensus 118 ~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~ig~~L 153 (677)
.. ... --.+....+++.+.|.+..+..+-..|
T Consensus 172 ~~-~v~---l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 172 ER-GLQ---LADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred Hc-CCC---CCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 21 111 223456777888999998887665544
No 117
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.06 E-value=13 Score=41.59 Aligned_cols=105 Identities=11% Similarity=0.122 Sum_probs=69.8
Q ss_pred CccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEEEcCc-hHHHHhcC-CCCeEecCCCChHHHHHHHHHHhhcCCCC
Q 038430 45 GKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTTRN-ELVARMMG-STNIIFIEQLTEEECWSLFKRLAFFGCSF 122 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiTTR~-~~v~~~~~-~~~~~~v~~L~~~ea~~LF~~~af~~~~~ 122 (677)
+++-+||+|++...+......+...+..-.....+|++|.+ ..+...+. -...+++++++.++..+.+...+.....
T Consensus 118 g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi- 196 (624)
T PRK14959 118 GRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGV- 196 (624)
T ss_pred CCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCC-
Confidence 56678999999877656677788887654445556665554 44443321 2357899999999998888876643222
Q ss_pred CCCcchhHHHHHHHHHhcCC-chHHHHHHHHh
Q 038430 123 EDCERLEPIGQKIARKCKGL-PIAAKVIGNLL 153 (677)
Q Consensus 123 ~~~~~~~~~~~~i~~~c~Gl-PLal~~ig~~L 153 (677)
.--.+....|++.++|- -.|+..+...+
T Consensus 197 ---~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 197 ---DYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred ---CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 12234577788888885 46777766544
No 118
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.84 E-value=13 Score=39.07 Aligned_cols=98 Identities=12% Similarity=0.148 Sum_probs=65.7
Q ss_pred CccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEEEcCch-HHHHhc-CCCCeEecCCCChHHHHHHHHHHhhcCCCC
Q 038430 45 GKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTTRNE-LVARMM-GSTNIIFIEQLTEEECWSLFKRLAFFGCSF 122 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiTTR~~-~v~~~~-~~~~~~~v~~L~~~ea~~LF~~~af~~~~~ 122 (677)
+++-++|+|++...+...+..+...+.......++|++|.+. .+.... .-...+++++++.++..+.+...+-....
T Consensus 118 ~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~- 196 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESI- 196 (363)
T ss_pred CCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCC-
Confidence 345589999998776556777888877766667777776544 343332 12458999999999988887776533221
Q ss_pred CCCcchhHHHHHHHHHhcCCchHH
Q 038430 123 EDCERLEPIGQKIARKCKGLPIAA 146 (677)
Q Consensus 123 ~~~~~~~~~~~~i~~~c~GlPLal 146 (677)
.--.+....++..++|-|-.+
T Consensus 197 ---~i~~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 197 ---DTDEYALKLIAYHAHGSMRDA 217 (363)
T ss_pred ---CCCHHHHHHHHHHcCCCHHHH
Confidence 112345677888999977543
No 119
>PLN03025 replication factor C subunit; Provisional
Probab=80.60 E-value=27 Score=36.00 Aligned_cols=97 Identities=8% Similarity=0.038 Sum_probs=61.2
Q ss_pred CccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEEEcCch-HHHHhcC-CCCeEecCCCChHHHHHHHHHHhhcCCCC
Q 038430 45 GKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTTRNE-LVARMMG-STNIIFIEQLTEEECWSLFKRLAFFGCSF 122 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiTTR~~-~v~~~~~-~~~~~~v~~L~~~ea~~LF~~~af~~~~~ 122 (677)
++.-++|+|+++..+......+...+......+++|+++... .+..... -...++++++++++..+.+.+.+-....
T Consensus 98 ~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~~egi- 176 (319)
T PLN03025 98 GRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMKVVEAEKV- 176 (319)
T ss_pred CCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCCCHHHHHHHHHHHHHHcCC-
Confidence 345689999998776555566666665545567777777542 2211111 1247999999999998888876633222
Q ss_pred CCCcchhHHHHHHHHHhcCCchH
Q 038430 123 EDCERLEPIGQKIARKCKGLPIA 145 (677)
Q Consensus 123 ~~~~~~~~~~~~i~~~c~GlPLa 145 (677)
.. -.+....+++.++|-.-.
T Consensus 177 ~i---~~~~l~~i~~~~~gDlR~ 196 (319)
T PLN03025 177 PY---VPEGLEAIIFTADGDMRQ 196 (319)
T ss_pred CC---CHHHHHHHHHHcCCCHHH
Confidence 11 234567788888876533
No 120
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=80.30 E-value=11 Score=38.92 Aligned_cols=98 Identities=11% Similarity=0.029 Sum_probs=61.3
Q ss_pred ccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEEEcCch-HHHHhc-CCCCeEecCCCChHHHHHHHHHHhhcCCCCC
Q 038430 46 KKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTTRNE-LVARMM-GSTNIIFIEQLTEEECWSLFKRLAFFGCSFE 123 (677)
Q Consensus 46 kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiTTR~~-~v~~~~-~~~~~~~v~~L~~~ea~~LF~~~af~~~~~~ 123 (677)
.+-+||+||+..........+...+.......++|+||... .+.... .....+++++++.++..+.+...+-.... .
T Consensus 125 ~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~-~ 203 (337)
T PRK12402 125 DYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGV-D 203 (337)
T ss_pred CCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCC-C
Confidence 34589999997654344555666665554556788877543 222222 12347889999999988888876533222 1
Q ss_pred CCcchhHHHHHHHHHhcCCchHHH
Q 038430 124 DCERLEPIGQKIARKCKGLPIAAK 147 (677)
Q Consensus 124 ~~~~~~~~~~~i~~~c~GlPLal~ 147 (677)
--.+....++++++|.+-.+.
T Consensus 204 ---~~~~al~~l~~~~~gdlr~l~ 224 (337)
T PRK12402 204 ---YDDDGLELIAYYAGGDLRKAI 224 (337)
T ss_pred ---CCHHHHHHHHHHcCCCHHHHH
Confidence 223457778888888765554
No 121
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=79.08 E-value=24 Score=36.89 Aligned_cols=102 Identities=13% Similarity=0.088 Sum_probs=65.9
Q ss_pred CccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEEEcCchH-HHHhc-CCCCeEecCCCChHHHHHHHHHHhhcCCCC
Q 038430 45 GKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTTRNEL-VARMM-GSTNIIFIEQLTEEECWSLFKRLAFFGCSF 122 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiTTR~~~-v~~~~-~~~~~~~v~~L~~~ea~~LF~~~af~~~~~ 122 (677)
+++-+||+|++...+......+...+........+|++|.+.+ +.... .....++.++++.++..+.+...+-....
T Consensus 116 ~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~- 194 (355)
T TIGR02397 116 GKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGI- 194 (355)
T ss_pred CCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCC-
Confidence 4555889999976654556677777766555667666665443 33332 12347889999999988888776532221
Q ss_pred CCCcchhHHHHHHHHHhcCCchHHHHHH
Q 038430 123 EDCERLEPIGQKIARKCKGLPIAAKVIG 150 (677)
Q Consensus 123 ~~~~~~~~~~~~i~~~c~GlPLal~~ig 150 (677)
. --.+....+++.++|-|..+...-
T Consensus 195 ~---i~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 195 K---IEDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred C---CCHHHHHHHHHHcCCChHHHHHHH
Confidence 1 123557778899999887665443
No 122
>PRK05642 DNA replication initiation factor; Validated
Probab=78.83 E-value=12 Score=36.64 Aligned_cols=95 Identities=14% Similarity=0.142 Sum_probs=57.0
Q ss_pred EEEEECCcCCC-ccchhh-hhhhhcCC-CCCcEEEEEcCchH---------HHHhcCCCCeEecCCCChHHHHHHHHHHh
Q 038430 49 FLILNDVWDGD-YNKWAP-FFLCLNHG-LHGSKILVTTRNEL---------VARMMGSTNIIFIEQLTEEECWSLFKRLA 116 (677)
Q Consensus 49 LlVlDdvw~~~-~~~~~~-l~~~~~~~-~~gS~IiiTTR~~~---------v~~~~~~~~~~~v~~L~~~ea~~LF~~~a 116 (677)
++|+|||.... ...|.. +...+... .+|.+||+||+... +..++....++++++++.++-.+...+++
T Consensus 100 ~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka 179 (234)
T PRK05642 100 LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRA 179 (234)
T ss_pred EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHH
Confidence 57889996431 234443 44444322 34677999987532 22233344689999999999999998776
Q ss_pred hcCCCCCCCcchhHHHHHHHHHhcCCchHHH
Q 038430 117 FFGCSFEDCERLEPIGQKIARKCKGLPIAAK 147 (677)
Q Consensus 117 f~~~~~~~~~~~~~~~~~i~~~c~GlPLal~ 147 (677)
.... .. --.++..-+++++.|-.-++.
T Consensus 180 ~~~~-~~---l~~ev~~~L~~~~~~d~r~l~ 206 (234)
T PRK05642 180 SRRG-LH---LTDEVGHFILTRGTRSMSALF 206 (234)
T ss_pred HHcC-CC---CCHHHHHHHHHhcCCCHHHHH
Confidence 4332 11 123556667777766654443
No 123
>COG3903 Predicted ATPase [General function prediction only]
Probab=78.14 E-value=2.3 Score=44.15 Aligned_cols=172 Identities=20% Similarity=0.223 Sum_probs=108.3
Q ss_pred HHHHHHHHcCCccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEEEcCchHHHHhcCCCCeEecCCCChH-HHHHHHH
Q 038430 35 LMSHIHRSIEGKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTTRNELVARMMGSTNIIFIEQLTEE-ECWSLFK 113 (677)
Q Consensus 35 ~~~~i~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiTTR~~~v~~~~~~~~~~~v~~L~~~-ea~~LF~ 113 (677)
.+..+..+..++|.++|+||.-+.- ..-..+...+..+...-.|+.|+|..-. +..+..+.++.|+.- ++.++|.
T Consensus 77 ~~~~~~~~~~~rr~llvldncehl~-~~~a~~i~all~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~ 152 (414)
T COG3903 77 AVDTLVRRIGDRRALLVLDNCEHLL-DACAALIVALLGACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFV 152 (414)
T ss_pred HHHHHHHHHhhhhHHHHhcCcHHHH-HHHHHHHHHHHccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHH
Confidence 3445667778899999999984431 2222233344444444568888886543 334667888888854 7999998
Q ss_pred HHhhcC-CCCCCCcchhHHHHHHHHHhcCCchHHHHHHHHhccCCCHHHHHHHHhhhhhhhhh-------cCCCccceee
Q 038430 114 RLAFFG-CSFEDCERLEPIGQKIARKCKGLPIAAKVIGNLLRSKSTIKDWQRILDSEMWKAEE-------IGKGLLTPLL 185 (677)
Q Consensus 114 ~~af~~-~~~~~~~~~~~~~~~i~~~c~GlPLal~~ig~~L~~~~~~~~w~~~l~~~~~~~~~-------~~~~i~~~l~ 185 (677)
-.|... ........-.....+|....+|.|+||...++..+.-. ..+--..+...-..+.. ........+.
T Consensus 153 ~ra~~~~~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~-~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ 231 (414)
T COG3903 153 CRAVLVALSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLS-PDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLD 231 (414)
T ss_pred HHHHHhccceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcC-HHHHHHHHhhHHHHHhcccccchhHHHhccchhh
Confidence 766322 22222234445678899999999999999998887763 33333333321111111 1244667788
Q ss_pred cccccCCCchhhhHHHhhhccCCCCcee
Q 038430 186 LSYNDLSSNSMVKRFFSYCAVFPKDYNM 213 (677)
Q Consensus 186 ~Sy~~L~~~~~~k~~fl~~a~fp~~~~i 213 (677)
.||.-|.. -.+..|--++.|...+..
T Consensus 232 ws~~lLtg--we~~~~~rLa~~~g~f~~ 257 (414)
T COG3903 232 WSYALLTG--WERALFGRLAVFVGGFDL 257 (414)
T ss_pred hhhHhhhh--HHHHHhcchhhhhhhhcc
Confidence 89988887 667777777777666543
No 124
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=77.76 E-value=9.4 Score=36.87 Aligned_cols=133 Identities=11% Similarity=0.115 Sum_probs=67.1
Q ss_pred cCCCCHHHHHHHHHHHhcCCCCC----CchHHHHHH------------HHHHHcCCccEEEEEECCcCCCc-cchhh-hh
Q 038430 6 SDTFEEISVANAIIEGLGESTSS----LSEFQSLMS------------HIHRSIEGKKNFLILNDVWDGDY-NKWAP-FF 67 (677)
Q Consensus 6 s~~~~~~~i~~~i~~~l~~~~~~----~~~~~~~~~------------~i~~~L~~kr~LlVlDdvw~~~~-~~~~~-l~ 67 (677)
.....-..+++.|...+...... ..+.++... .+++.+++- =+|++|||..... ..|+. +.
T Consensus 42 ~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~~~-DlL~iDDi~~l~~~~~~q~~lf 120 (219)
T PF00308_consen 42 PSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLRSA-DLLIIDDIQFLAGKQRTQEELF 120 (219)
T ss_dssp STTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHCTS-SEEEEETGGGGTTHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhhcC-CEEEEecchhhcCchHHHHHHH
Confidence 33445556777776665432111 123333322 233344433 3678899976432 22333 22
Q ss_pred hhhcCC-CCCcEEEEEcCch---------HHHHhcCCCCeEecCCCChHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHH
Q 038430 68 LCLNHG-LHGSKILVTTRNE---------LVARMMGSTNIIFIEQLTEEECWSLFKRLAFFGCSFEDCERLEPIGQKIAR 137 (677)
Q Consensus 68 ~~~~~~-~~gS~IiiTTR~~---------~v~~~~~~~~~~~v~~L~~~ea~~LF~~~af~~~~~~~~~~~~~~~~~i~~ 137 (677)
..+... .+|-+||+|++.. ++..++...-+++++++++++-.+++.+.|-...-. --+++..-+++
T Consensus 121 ~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~----l~~~v~~~l~~ 196 (219)
T PF00308_consen 121 HLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIE----LPEEVIEYLAR 196 (219)
T ss_dssp HHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT------S-HHHHHHHHH
T ss_pred HHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCC----CcHHHHHHHHH
Confidence 222221 3466899999533 344455556689999999999999999987433221 12334455555
Q ss_pred HhcCCc
Q 038430 138 KCKGLP 143 (677)
Q Consensus 138 ~c~GlP 143 (677)
++.+-.
T Consensus 197 ~~~~~~ 202 (219)
T PF00308_consen 197 RFRRDV 202 (219)
T ss_dssp HTTSSH
T ss_pred hhcCCH
Confidence 554433
No 125
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=77.71 E-value=21 Score=36.76 Aligned_cols=93 Identities=12% Similarity=0.055 Sum_probs=66.7
Q ss_pred CccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEEEcCch-HHHHhcCC-CCeEecCCCChHHHHHHHHHHhhcCCCC
Q 038430 45 GKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTTRNE-LVARMMGS-TNIIFIEQLTEEECWSLFKRLAFFGCSF 122 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiTTR~~-~v~~~~~~-~~~~~v~~L~~~ea~~LF~~~af~~~~~ 122 (677)
+++=.+|+|++...+......+...+..-..+..+|++|.+. .+..+.-+ ...+.+.+++.+++.+.+...+. .
T Consensus 106 g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~~~~---~- 181 (325)
T PRK06871 106 GGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQAQSS---A- 181 (325)
T ss_pred CCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHHHHHhc---c-
Confidence 455578899999888778888988888776777777777654 55544332 55899999999999888876531 1
Q ss_pred CCCcchhHHHHHHHHHhcCCchHH
Q 038430 123 EDCERLEPIGQKIARKCKGLPIAA 146 (677)
Q Consensus 123 ~~~~~~~~~~~~i~~~c~GlPLal 146 (677)
+ ...+...+..++|-|...
T Consensus 182 ---~--~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 182 ---E--ISEILTALRINYGRPLLA 200 (325)
T ss_pred ---C--hHHHHHHHHHcCCCHHHH
Confidence 1 112556788899999633
No 126
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=76.51 E-value=43 Score=33.81 Aligned_cols=145 Identities=16% Similarity=0.165 Sum_probs=88.7
Q ss_pred eEEecCCCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHcCC-ccEEEEEECCcCC---Ccc---chhhhhhhhcCCC
Q 038430 2 WVCVSDTFEEISVANAIIEGLGESTSSLSEFQSLMSHIHRSIEG-KKNFLILNDVWDG---DYN---KWAPFFLCLNHGL 74 (677)
Q Consensus 2 WV~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~i~~~L~~-kr~LlVlDdvw~~---~~~---~~~~l~~~~~~~~ 74 (677)
-|.+...++...++..|+.+++.......+.......+.+.++. +-=+||+|.+.+. ... +.-.....+.+.-
T Consensus 100 ~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL 179 (302)
T PF05621_consen 100 YVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNEL 179 (302)
T ss_pred EEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhcc
Confidence 36778899999999999999999887777777777777777775 3447889999552 112 2222333444444
Q ss_pred CCcEEEEEcCchHHHHhcCC-----CCeEecCCCChHH-HHHHHHHHh--hcCCCCCCCcchhHHHHHHHHHhcCCchHH
Q 038430 75 HGSKILVTTRNELVARMMGS-----TNIIFIEQLTEEE-CWSLFKRLA--FFGCSFEDCERLEPIGQKIARKCKGLPIAA 146 (677)
Q Consensus 75 ~gS~IiiTTR~~~v~~~~~~-----~~~~~v~~L~~~e-a~~LF~~~a--f~~~~~~~~~~~~~~~~~i~~~c~GlPLal 146 (677)
.-+-|.+-|++..-+-..+. ...+.++.-..++ ...|..... ..-..+.. -...+++..|...++|+.=-+
T Consensus 180 ~ipiV~vGt~~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~-l~~~~la~~i~~~s~G~iG~l 258 (302)
T PF05621_consen 180 QIPIVGVGTREAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSN-LASPELARRIHERSEGLIGEL 258 (302)
T ss_pred CCCeEEeccHHHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCC-CCCHHHHHHHHHHcCCchHHH
Confidence 55677777766544433221 2356666655444 444443321 11122211 234678899999999986544
Q ss_pred H
Q 038430 147 K 147 (677)
Q Consensus 147 ~ 147 (677)
.
T Consensus 259 ~ 259 (302)
T PF05621_consen 259 S 259 (302)
T ss_pred H
Confidence 3
No 127
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=75.89 E-value=18 Score=37.11 Aligned_cols=97 Identities=20% Similarity=0.168 Sum_probs=66.0
Q ss_pred CccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEEEcCchHHHHhcCC-CCeEecCCCChHHHHHHHHHHhhcCCCCC
Q 038430 45 GKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTTRNELVARMMGS-TNIIFIEQLTEEECWSLFKRLAFFGCSFE 123 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiTTR~~~v~~~~~~-~~~~~v~~L~~~ea~~LF~~~af~~~~~~ 123 (677)
+++-++|+|++...+......+...+..-.++--|++|++-..+.....+ .+.+++++++.++..+.+...+...
T Consensus 123 ~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~---- 198 (314)
T PRK07399 123 APRKVVVIEDAETMNEAAANALLKTLEEPGNGTLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEE---- 198 (314)
T ss_pred CCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccc----
Confidence 56678999999887767777888888765544344455555555555433 5689999999999999988764211
Q ss_pred CCcchhHHHHHHHHHhcCCchHHHH
Q 038430 124 DCERLEPIGQKIARKCKGLPIAAKV 148 (677)
Q Consensus 124 ~~~~~~~~~~~i~~~c~GlPLal~~ 148 (677)
........++..++|-|.....
T Consensus 199 ---~~~~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 199 ---ILNINFPELLALAQGSPGAAIA 220 (314)
T ss_pred ---cchhHHHHHHHHcCCCHHHHHH
Confidence 1111135788999999976544
No 128
>COG3899 Predicted ATPase [General function prediction only]
Probab=75.69 E-value=15 Score=43.38 Aligned_cols=166 Identities=14% Similarity=0.116 Sum_probs=95.4
Q ss_pred HHHHHHcC-CccEEEEEECCcCCCccchhhhhhhhcCCCC----CcEE--EEEcCch--HHHHhcCCCCeEecCCCChHH
Q 038430 37 SHIHRSIE-GKKNFLILNDVWDGDYNKWAPFFLCLNHGLH----GSKI--LVTTRNE--LVARMMGSTNIIFIEQLTEEE 107 (677)
Q Consensus 37 ~~i~~~L~-~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~----gS~I--iiTTR~~--~v~~~~~~~~~~~v~~L~~~e 107 (677)
..+..... .|+..+|+||+...+.....-+......... -..| +.|.|.. .+.........+.+.||+..+
T Consensus 144 ~~i~~~~~~~~plVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d 223 (849)
T COG3899 144 RFIQVFTAEEHPLVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRAD 223 (849)
T ss_pred HHHHHHHhccCCeEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhh
Confidence 33444444 5699999999955433333333332222211 1122 2333332 121222334589999999999
Q ss_pred HHHHHHHHhhcCCCCCCCcchhHHHHHHHHHhcCCchHHHHHHHHhccCC------CHHHHHHHHhhhhhhhhhcCCCcc
Q 038430 108 CWSLFKRLAFFGCSFEDCERLEPIGQKIARKCKGLPIAAKVIGNLLRSKS------TIKDWQRILDSEMWKAEEIGKGLL 181 (677)
Q Consensus 108 a~~LF~~~af~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~ig~~L~~~~------~~~~w~~~l~~~~~~~~~~~~~i~ 181 (677)
.-.|..... +... ..-.+....|+++.+|.|+.+..+-..+.... +...|+--..+. ......+++.
T Consensus 224 ~~~lV~~~l-~~~~----~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i--~~~~~~~~vv 296 (849)
T COG3899 224 TNQLVAATL-GCTK----LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASL--GILATTDAVV 296 (849)
T ss_pred HHHHHHHHh-CCcc----cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhc--CCchhhHHHH
Confidence 999987754 2212 23456688999999999999999998887641 222333221110 0000012233
Q ss_pred ceeecccccCCCchhhhHHHhhhccCCCCc
Q 038430 182 TPLLLSYNDLSSNSMVKRFFSYCAVFPKDY 211 (677)
Q Consensus 182 ~~l~~Sy~~L~~~~~~k~~fl~~a~fp~~~ 211 (677)
..+..-.+.||. ..+..+-..|++...+
T Consensus 297 ~~l~~rl~kL~~--~t~~Vl~~AA~iG~~F 324 (849)
T COG3899 297 EFLAARLQKLPG--TTREVLKAAACIGNRF 324 (849)
T ss_pred HHHHHHHhcCCH--HHHHHHHHHHHhCccC
Confidence 346667788888 7888888888886443
No 129
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=75.66 E-value=27 Score=38.75 Aligned_cols=102 Identities=13% Similarity=0.121 Sum_probs=66.0
Q ss_pred CccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEE-EcCchHHHHhcC-CCCeEecCCCChHHHHHHHHHHhhcCCCC
Q 038430 45 GKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILV-TTRNELVARMMG-STNIIFIEQLTEEECWSLFKRLAFFGCSF 122 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~Iii-TTR~~~v~~~~~-~~~~~~v~~L~~~ea~~LF~~~af~~~~~ 122 (677)
+++-++|+|++...+...+..+...+.......++|+ ||....+..... -...+++++++.++-.+.+.+.+-.. ..
T Consensus 118 g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~e-gi 196 (546)
T PRK14957 118 GRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKE-NI 196 (546)
T ss_pred CCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHc-CC
Confidence 5667999999987776778888888887655666664 544444443321 24689999999999877777644221 11
Q ss_pred CCCcchhHHHHHHHHHhcCCc-hHHHHHH
Q 038430 123 EDCERLEPIGQKIARKCKGLP-IAAKVIG 150 (677)
Q Consensus 123 ~~~~~~~~~~~~i~~~c~GlP-Lal~~ig 150 (677)
.--......++..++|-+ -|+..+-
T Consensus 197 ---~~e~~Al~~Ia~~s~GdlR~alnlLe 222 (546)
T PRK14957 197 ---NSDEQSLEYIAYHAKGSLRDALSLLD 222 (546)
T ss_pred ---CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 122334567888888855 4444443
No 130
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=75.32 E-value=11 Score=38.75 Aligned_cols=95 Identities=12% Similarity=0.082 Sum_probs=66.6
Q ss_pred CccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEEEcCc-hHHHHhcCC-CCeEecCCCChHHHHHHHHHHhhcCCCC
Q 038430 45 GKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTTRN-ELVARMMGS-TNIIFIEQLTEEECWSLFKRLAFFGCSF 122 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiTTR~-~~v~~~~~~-~~~~~v~~L~~~ea~~LF~~~af~~~~~ 122 (677)
+++=++|+|++...+...-..+...+..-..++.+|++|.+ ..+....-+ ...+.+.+++.+++.+.+.... .
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~----~- 186 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG----V- 186 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC----C-
Confidence 45568899999887766777788888776667777777764 455554432 5578999999999888776521 1
Q ss_pred CCCcchhHHHHHHHHHhcCCchHHHHH
Q 038430 123 EDCERLEPIGQKIARKCKGLPIAAKVI 149 (677)
Q Consensus 123 ~~~~~~~~~~~~i~~~c~GlPLal~~i 149 (677)
-..-+..++..++|-|+....+
T Consensus 187 -----~~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 187 -----SERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred -----ChHHHHHHHHHcCCCHHHHHHH
Confidence 1122667899999999866543
No 131
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=74.45 E-value=20 Score=40.58 Aligned_cols=99 Identities=14% Similarity=0.108 Sum_probs=63.0
Q ss_pred CccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEEEcCch-HHHHhc-CCCCeEecCCCChHHHHHHHHHHhhcCCCC
Q 038430 45 GKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTTRNE-LVARMM-GSTNIIFIEQLTEEECWSLFKRLAFFGCSF 122 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiTTR~~-~v~~~~-~~~~~~~v~~L~~~ea~~LF~~~af~~~~~ 122 (677)
+++-++|+|++...+......+...+..-....++|++|.+. .+.... .-...|+++.++.++..+.+.+.+-....
T Consensus 118 gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi- 196 (709)
T PRK08691 118 GKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKI- 196 (709)
T ss_pred CCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCC-
Confidence 556689999997765455666777776544456677666544 333221 11346888899999988888776532221
Q ss_pred CCCcchhHHHHHHHHHhcCCchHHH
Q 038430 123 EDCERLEPIGQKIARKCKGLPIAAK 147 (677)
Q Consensus 123 ~~~~~~~~~~~~i~~~c~GlPLal~ 147 (677)
. --.+....|++.++|-+--+.
T Consensus 197 ~---id~eAL~~Ia~~A~GslRdAl 218 (709)
T PRK08691 197 A---YEPPALQLLGRAAAGSMRDAL 218 (709)
T ss_pred C---cCHHHHHHHHHHhCCCHHHHH
Confidence 1 123456788899988875443
No 132
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=74.41 E-value=19 Score=41.47 Aligned_cols=93 Identities=16% Similarity=0.253 Sum_probs=56.1
Q ss_pred CccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEEE--cCch--HHHHhcC-CCCeEecCCCChHHHHHHHHHHhhc-
Q 038430 45 GKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVT--TRNE--LVARMMG-STNIIFIEQLTEEECWSLFKRLAFF- 118 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiT--TR~~--~v~~~~~-~~~~~~v~~L~~~ea~~LF~~~af~- 118 (677)
+++.++|+|||+.-+...++.+...+. .|+.++|+ |.+. .+..... -..++++++|+.++...++.+.+-.
T Consensus 108 ~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~ 184 (725)
T PRK13341 108 GKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDK 184 (725)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhhHhhccccceecCCCCHHHHHHHHHHHHHHH
Confidence 467799999998765455555554443 36666664 3332 1222111 1357999999999999998875531
Q ss_pred -----CCCCCCCcchhHHHHHHHHHhcCCc
Q 038430 119 -----GCSFEDCERLEPIGQKIARKCKGLP 143 (677)
Q Consensus 119 -----~~~~~~~~~~~~~~~~i~~~c~GlP 143 (677)
.... .--.+....+++++.|.-
T Consensus 185 ~~~~g~~~v---~I~deaL~~La~~s~GD~ 211 (725)
T PRK13341 185 ERGYGDRKV---DLEPEAEKHLVDVANGDA 211 (725)
T ss_pred HhhcCCccc---CCCHHHHHHHHHhCCCCH
Confidence 1111 122345567777887753
No 133
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=72.61 E-value=95 Score=31.66 Aligned_cols=97 Identities=8% Similarity=0.013 Sum_probs=60.9
Q ss_pred ccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEEEcCch-HHHHhc-CCCCeEecCCCChHHHHHHHHHHhhcCCCCC
Q 038430 46 KKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTTRNE-LVARMM-GSTNIIFIEQLTEEECWSLFKRLAFFGCSFE 123 (677)
Q Consensus 46 kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiTTR~~-~v~~~~-~~~~~~~v~~L~~~ea~~LF~~~af~~~~~~ 123 (677)
.+-+|++|++..........+...+......+++|+++... .+.... .....+++++++.++........+-.... .
T Consensus 102 ~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~~~~-~ 180 (319)
T PRK00440 102 PFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAENEGI-E 180 (319)
T ss_pred CceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeCCCCHHHHHHHHHHHHHHcCC-C
Confidence 45689999997654445556766666555556777776432 221111 11236899999999988888876643222 1
Q ss_pred CCcchhHHHHHHHHHhcCCchHH
Q 038430 124 DCERLEPIGQKIARKCKGLPIAA 146 (677)
Q Consensus 124 ~~~~~~~~~~~i~~~c~GlPLal 146 (677)
--.+....+++.++|-+--+
T Consensus 181 ---i~~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 181 ---ITDDALEAIYYVSEGDMRKA 200 (319)
T ss_pred ---CCHHHHHHHHHHcCCCHHHH
Confidence 12345677888898877654
No 134
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=72.25 E-value=93 Score=34.00 Aligned_cols=118 Identities=18% Similarity=0.175 Sum_probs=69.4
Q ss_pred CccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEEEcCc-hHHHHhcC-CCCeEecCCCChHHHHHHHHHHhhcCCCC
Q 038430 45 GKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTTRN-ELVARMMG-STNIIFIEQLTEEECWSLFKRLAFFGCSF 122 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiTTR~-~~v~~~~~-~~~~~~v~~L~~~ea~~LF~~~af~~~~~ 122 (677)
+++-++|+|++...+......+...+........+|++|.+ ..+..... ....+++++++.++-...+.+.+.....
T Consensus 116 ~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi- 194 (472)
T PRK14962 116 GKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGI- 194 (472)
T ss_pred CCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCC-
Confidence 45668999999765445556676676654434444444433 44444332 2458999999999988888776643221
Q ss_pred CCCcchhHHHHHHHHHhc-CCchHHHHHHHHhc---cCCCHHHHHHHH
Q 038430 123 EDCERLEPIGQKIARKCK-GLPIAAKVIGNLLR---SKSTIKDWQRIL 166 (677)
Q Consensus 123 ~~~~~~~~~~~~i~~~c~-GlPLal~~ig~~L~---~~~~~~~w~~~l 166 (677)
. --.+....++++++ +++.|+..+-.+.. ++-+.+..+.++
T Consensus 195 ~---i~~eal~~Ia~~s~GdlR~aln~Le~l~~~~~~~It~e~V~~~l 239 (472)
T PRK14962 195 E---IDREALSFIAKRASGGLRDALTMLEQVWKFSEGKITLETVHEAL 239 (472)
T ss_pred C---CCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 1 12344666777775 55677766654332 123445555444
No 135
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=71.75 E-value=23 Score=37.77 Aligned_cols=99 Identities=14% Similarity=0.128 Sum_probs=65.4
Q ss_pred CccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEEEc-CchHHHHhcC-CCCeEecCCCChHHHHHHHHHHhhcCCCC
Q 038430 45 GKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTT-RNELVARMMG-STNIIFIEQLTEEECWSLFKRLAFFGCSF 122 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiTT-R~~~v~~~~~-~~~~~~v~~L~~~ea~~LF~~~af~~~~~ 122 (677)
+++-++|+|++...+...+..+...+.+-...+.+|++| +-..+..... ....++.++++.++..+.+...+-.. ..
T Consensus 126 ~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~-g~ 204 (397)
T PRK14955 126 GRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAE-GI 204 (397)
T ss_pred CCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHc-CC
Confidence 455688999998776567888888887766677766555 4444443321 13478999999998887777654221 11
Q ss_pred CCCcchhHHHHHHHHHhcCCchHHH
Q 038430 123 EDCERLEPIGQKIARKCKGLPIAAK 147 (677)
Q Consensus 123 ~~~~~~~~~~~~i~~~c~GlPLal~ 147 (677)
.--.+.+..++..++|-+--+.
T Consensus 205 ---~i~~~al~~l~~~s~g~lr~a~ 226 (397)
T PRK14955 205 ---SVDADALQLIGRKAQGSMRDAQ 226 (397)
T ss_pred ---CCCHHHHHHHHHHcCCCHHHHH
Confidence 1234557789999999765443
No 136
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=71.70 E-value=29 Score=39.13 Aligned_cols=99 Identities=10% Similarity=0.054 Sum_probs=65.1
Q ss_pred ccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEEEc-CchHHHHhc-CCCCeEecCCCChHHHHHHHHHHhhcCCCCC
Q 038430 46 KKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTT-RNELVARMM-GSTNIIFIEQLTEEECWSLFKRLAFFGCSFE 123 (677)
Q Consensus 46 kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiTT-R~~~v~~~~-~~~~~~~v~~L~~~ea~~LF~~~af~~~~~~ 123 (677)
+.-++|+|+|...+...+..+...+..-....++|++| ....+.... .-...++++.++.++-.+.+.+.+-.... .
T Consensus 124 ~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi-~ 202 (618)
T PRK14951 124 RFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENV-P 202 (618)
T ss_pred CceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCC-C
Confidence 44588999998877677778888777655555666555 444444332 22458999999999988888776532221 1
Q ss_pred CCcchhHHHHHHHHHhcCCchHHHH
Q 038430 124 DCERLEPIGQKIARKCKGLPIAAKV 148 (677)
Q Consensus 124 ~~~~~~~~~~~i~~~c~GlPLal~~ 148 (677)
--.+....+++.++|-+-.+..
T Consensus 203 ---ie~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 203 ---AEPQALRLLARAARGSMRDALS 224 (618)
T ss_pred ---CCHHHHHHHHHHcCCCHHHHHH
Confidence 1234567788888887654433
No 137
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=71.21 E-value=30 Score=39.10 Aligned_cols=96 Identities=15% Similarity=0.112 Sum_probs=63.2
Q ss_pred CccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEEEc-CchHHHHhc-CCCCeEecCCCChHHHHHHHHHHhhcCCCC
Q 038430 45 GKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTT-RNELVARMM-GSTNIIFIEQLTEEECWSLFKRLAFFGCSF 122 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiTT-R~~~v~~~~-~~~~~~~v~~L~~~ea~~LF~~~af~~~~~ 122 (677)
+.+-++|+|++...+......+...+..-...+.+|++| +-..+...+ .....++.++++.++....+.+.+-....
T Consensus 126 ~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi- 204 (620)
T PRK14954 126 GRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGI- 204 (620)
T ss_pred CCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCC-
Confidence 445578999998776666778888887765566655544 445554433 23568999999999887777665432111
Q ss_pred CCCcchhHHHHHHHHHhcCCch
Q 038430 123 EDCERLEPIGQKIARKCKGLPI 144 (677)
Q Consensus 123 ~~~~~~~~~~~~i~~~c~GlPL 144 (677)
.--.+.+..++..++|-.-
T Consensus 205 ---~I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 205 ---QIDADALQLIARKAQGSMR 223 (620)
T ss_pred ---CCCHHHHHHHHHHhCCCHH
Confidence 1223457788899998544
No 138
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=71.04 E-value=25 Score=41.16 Aligned_cols=98 Identities=9% Similarity=0.049 Sum_probs=65.5
Q ss_pred CccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEEEcC-chHHHHhcC-CCCeEecCCCChHHHHHHHHHHhhcCCCC
Q 038430 45 GKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTTR-NELVARMMG-STNIIFIEQLTEEECWSLFKRLAFFGCSF 122 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiTTR-~~~v~~~~~-~~~~~~v~~L~~~ea~~LF~~~af~~~~~ 122 (677)
+++=++|||++...+...+..|...+.+-.....+|++|. ...+...+. -...|++..++.++-.+.+.+.+-. +..
T Consensus 119 ~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~-EGv 197 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQ-EGV 197 (824)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHH-cCC
Confidence 4455788999998877788888888987666666665554 444554432 2558999999999888777765422 221
Q ss_pred CCCcchhHHHHHHHHHhcCCchHH
Q 038430 123 EDCERLEPIGQKIARKCKGLPIAA 146 (677)
Q Consensus 123 ~~~~~~~~~~~~i~~~c~GlPLal 146 (677)
. .-.+....|++.++|-+..+
T Consensus 198 ~---id~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 198 P---VEPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred C---CCHHHHHHHHHHcCCCHHHH
Confidence 1 12334567888899977433
No 139
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=70.23 E-value=40 Score=36.61 Aligned_cols=101 Identities=14% Similarity=0.129 Sum_probs=63.9
Q ss_pred CccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEEEcC-chHHHHhc-CCCCeEecCCCChHHHHHHHHHHhhcCCCC
Q 038430 45 GKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTTR-NELVARMM-GSTNIIFIEQLTEEECWSLFKRLAFFGCSF 122 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiTTR-~~~v~~~~-~~~~~~~v~~L~~~ea~~LF~~~af~~~~~ 122 (677)
+++-++|+|++...+......+...+.....+..+|++|. ...+.... .-...+++++++.++..+.+.+.+-....
T Consensus 120 ~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~- 198 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGI- 198 (451)
T ss_pred CCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCC-
Confidence 5667889999976654556667777776555666666664 33333322 12457999999999988877765532111
Q ss_pred CCCcchhHHHHHHHHHhcCCc-hHHHHH
Q 038430 123 EDCERLEPIGQKIARKCKGLP-IAAKVI 149 (677)
Q Consensus 123 ~~~~~~~~~~~~i~~~c~GlP-Lal~~i 149 (677)
.--.+.+..++++++|-+ .|+..+
T Consensus 199 ---~i~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 199 ---ETSREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred ---CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 122345778899998865 444433
No 140
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=70.19 E-value=32 Score=35.29 Aligned_cols=93 Identities=9% Similarity=0.085 Sum_probs=67.2
Q ss_pred CccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEEEcCc-hHHHHhcCC-CCeEecCCCChHHHHHHHHHHhhcCCCC
Q 038430 45 GKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTTRN-ELVARMMGS-TNIIFIEQLTEEECWSLFKRLAFFGCSF 122 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiTTR~-~~v~~~~~~-~~~~~v~~L~~~ea~~LF~~~af~~~~~ 122 (677)
+++=.+|+|++...+......+...+..-..++.+|++|.+ ..+..+.-+ .+.+.+++++.+++.+.+.... .
T Consensus 107 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~-----~ 181 (319)
T PRK06090 107 NGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG-----I 181 (319)
T ss_pred CCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcC-----C
Confidence 34457889999888777888898888876667776666655 456665433 5589999999999988876531 0
Q ss_pred CCCcchhHHHHHHHHHhcCCchHHHHH
Q 038430 123 EDCERLEPIGQKIARKCKGLPIAAKVI 149 (677)
Q Consensus 123 ~~~~~~~~~~~~i~~~c~GlPLal~~i 149 (677)
+ .+..++..++|-|+....+
T Consensus 182 ---~----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 182 ---T----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred ---c----hHHHHHHHcCCCHHHHHHH
Confidence 1 1356788999999876544
No 141
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=69.50 E-value=0.07 Score=57.76 Aligned_cols=187 Identities=18% Similarity=0.112 Sum_probs=107.9
Q ss_pred eEEEEEEecCCCc-----ccccccCCCcccEEEeCCCCCCCCCCccCCcccCCC-CCcCEEEecCcccc-----ccchhh
Q 038430 305 VRHLGLKFKGGAS-----FPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKL-MHLKYLNLSELHIE-----RLPKTL 373 (677)
Q Consensus 305 l~~L~l~~~~~~~-----~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l-~~L~~L~Ls~~~i~-----~lp~~i 373 (677)
+.++.+.+|.+.. +-..+....+|..|++++|.+.......+-..+... ..|++|++..|.++ .+...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 4556666665532 235667778888888887554322222232333333 56777888777765 345556
Q ss_pred ccCCCcCEEEecCCCCcc----ccCcccc----cccccceeecCccCCCcc----cCCcCCCCCC-CCccCceeeCCCcC
Q 038430 374 CELYNLQKLDIRGCRNLR----ELPTGIG----KLKNMRSLLNGLTCSLKY----MPIGISKLTS-LRTLDKFAVGGGVD 440 (677)
Q Consensus 374 ~~l~~L~~L~L~~~~~l~----~lp~~i~----~l~~L~~L~l~~~~~~~~----~p~~i~~l~~-L~~L~l~~~~~~~~ 440 (677)
.....|+.++++.|.... .++..+. ...++++|.+.+|..... +...+...+. +..|++..+.....
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 667888888888886321 2233333 467788888888742211 1112334444 55677766665531
Q ss_pred CCCcccccccccC-CcCCcccccCccCCCChhHHHHhhccCCcccCceEEEee
Q 038430 441 GGSTCRLECLKNF-QLIRKCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFE 492 (677)
Q Consensus 441 ~~~~~~~~~L~~l-~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 492 (677)
........+..+ ..++.+.+..++............+..+.+++.|.++.+
T Consensus 249 -g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n 300 (478)
T KOG4308|consen 249 -GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNN 300 (478)
T ss_pred -HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccC
Confidence 001122334444 455777777765555555566666777788888888877
No 142
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=69.45 E-value=44 Score=37.88 Aligned_cols=98 Identities=14% Similarity=0.092 Sum_probs=66.3
Q ss_pred CccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEEEc-CchHHHHhcC-CCCeEecCCCChHHHHHHHHHHhhcCCCC
Q 038430 45 GKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTT-RNELVARMMG-STNIIFIEQLTEEECWSLFKRLAFFGCSF 122 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiTT-R~~~v~~~~~-~~~~~~v~~L~~~ea~~LF~~~af~~~~~ 122 (677)
+++=++|+|++...+...+..+...+..-...+.+|++| +...+..... -..+++.++++.++..+.+.+.+-....
T Consensus 120 ~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi- 198 (614)
T PRK14971 120 GKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGI- 198 (614)
T ss_pred CCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCC-
Confidence 455588999998876677888888888766667666544 5555554432 2458999999999988888776533221
Q ss_pred CCCcchhHHHHHHHHHhcCCchHH
Q 038430 123 EDCERLEPIGQKIARKCKGLPIAA 146 (677)
Q Consensus 123 ~~~~~~~~~~~~i~~~c~GlPLal 146 (677)
. .-.+....++..++|-.--+
T Consensus 199 ~---i~~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 199 T---AEPEALNVIAQKADGGMRDA 219 (614)
T ss_pred C---CCHHHHHHHHHHcCCCHHHH
Confidence 1 12245677888898865433
No 143
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=69.01 E-value=28 Score=36.06 Aligned_cols=92 Identities=12% Similarity=0.113 Sum_probs=64.7
Q ss_pred CccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEEEcCc-hHHHHhcCC-CCeEecCCCChHHHHHHHHHHhhcCCCC
Q 038430 45 GKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTTRN-ELVARMMGS-TNIIFIEQLTEEECWSLFKRLAFFGCSF 122 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiTTR~-~~v~~~~~~-~~~~~v~~L~~~ea~~LF~~~af~~~~~ 122 (677)
+++=.+|+|++...+...+..+...+..-..+..+|.+|.+ ..+..+.-+ .+.+.+.+++.++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~----~- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG----V- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC----C-
Confidence 44557889999998888889999999877667766655554 555555332 4689999999999988886641 1
Q ss_pred CCCcchhHHHHHHHHHhcCCchHHHH
Q 038430 123 EDCERLEPIGQKIARKCKGLPIAAKV 148 (677)
Q Consensus 123 ~~~~~~~~~~~~i~~~c~GlPLal~~ 148 (677)
+. ...++..++|-|.....
T Consensus 206 ---~~----~~~~l~~~~Gsp~~Al~ 224 (342)
T PRK06964 206 ---AD----ADALLAEAGGAPLAALA 224 (342)
T ss_pred ---Ch----HHHHHHHcCCCHHHHHH
Confidence 11 22357788999975443
No 144
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=68.84 E-value=30 Score=39.08 Aligned_cols=99 Identities=12% Similarity=0.058 Sum_probs=66.5
Q ss_pred CccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEEEcCchH-HHHhc-CCCCeEecCCCChHHHHHHHHHHhhcCCCC
Q 038430 45 GKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTTRNEL-VARMM-GSTNIIFIEQLTEEECWSLFKRLAFFGCSF 122 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiTTR~~~-v~~~~-~~~~~~~v~~L~~~ea~~LF~~~af~~~~~ 122 (677)
+++-++|+|+|...+......+...+.....+.++|++|.+.+ +.... .-...+++++++.++..+.+.+.+-....
T Consensus 117 gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI- 195 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQI- 195 (702)
T ss_pred CCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCC-
Confidence 5566899999987766677778888877656667887776643 22221 22458999999999988888776533222
Q ss_pred CCCcchhHHHHHHHHHhcCCchHHH
Q 038430 123 EDCERLEPIGQKIARKCKGLPIAAK 147 (677)
Q Consensus 123 ~~~~~~~~~~~~i~~~c~GlPLal~ 147 (677)
.--.+....|++.++|-+-.+.
T Consensus 196 ---~id~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 196 ---AADQDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred ---CCCHHHHHHHHHHcCCCHHHHH
Confidence 1223446678888888764443
No 145
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=68.82 E-value=62 Score=36.55 Aligned_cols=100 Identities=11% Similarity=0.054 Sum_probs=66.0
Q ss_pred CccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEEEcCc-hHHHHhcC-CCCeEecCCCChHHHHHHHHHHhhcCCCC
Q 038430 45 GKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTTRN-ELVARMMG-STNIIFIEQLTEEECWSLFKRLAFFGCSF 122 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiTTR~-~~v~~~~~-~~~~~~v~~L~~~ea~~LF~~~af~~~~~ 122 (677)
+++-++|+|++...+......+...+..-.....+|++|.+ ..+..... -...++++.++.++....+.+.+-....
T Consensus 119 ~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl- 197 (585)
T PRK14950 119 ARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGI- 197 (585)
T ss_pred CCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCC-
Confidence 45668999999776556677777777765556666666643 34443321 2457889999999888888776643222
Q ss_pred CCCcchhHHHHHHHHHhcCCchHHHH
Q 038430 123 EDCERLEPIGQKIARKCKGLPIAAKV 148 (677)
Q Consensus 123 ~~~~~~~~~~~~i~~~c~GlPLal~~ 148 (677)
. --.+....+++.++|-+..+..
T Consensus 198 ~---i~~eal~~La~~s~Gdlr~al~ 220 (585)
T PRK14950 198 N---LEPGALEAIARAATGSMRDAEN 220 (585)
T ss_pred C---CCHHHHHHHHHHcCCCHHHHHH
Confidence 1 1235577889999998865543
No 146
>PF14516 AAA_35: AAA-like domain
Probab=68.57 E-value=44 Score=34.63 Aligned_cols=54 Identities=19% Similarity=0.116 Sum_probs=42.6
Q ss_pred CCeEecCCCChHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHhcCCchHHHHHHHHhccC
Q 038430 95 TNIIFIEQLTEEECWSLFKRLAFFGCSFEDCERLEPIGQKIARKCKGLPIAAKVIGNLLRSK 156 (677)
Q Consensus 95 ~~~~~v~~L~~~ea~~LF~~~af~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~ig~~L~~~ 156 (677)
...+++++++.+|..+|...+... .-....+++...++|+|--+..++..+...
T Consensus 193 g~~i~L~~Ft~~ev~~L~~~~~~~--------~~~~~~~~l~~~tgGhP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 193 GQPIELPDFTPEEVQELAQRYGLE--------FSQEQLEQLMDWTGGHPYLVQKACYLLVEE 246 (331)
T ss_pred ccceeCCCCCHHHHHHHHHhhhcc--------CCHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 447899999999999999886421 112227889999999999999999999664
No 147
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=67.95 E-value=36 Score=36.96 Aligned_cols=97 Identities=13% Similarity=0.039 Sum_probs=64.2
Q ss_pred CccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEE-EEcCchHHHHhcCC-CCeEecCCCChHHHHHHHHHHhhcCCCC
Q 038430 45 GKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKIL-VTTRNELVARMMGS-TNIIFIEQLTEEECWSLFKRLAFFGCSF 122 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~Ii-iTTR~~~v~~~~~~-~~~~~v~~L~~~ea~~LF~~~af~~~~~ 122 (677)
++.-++|+|+|...+...+..+...+........+| .||....+....-. .+.|.+++++.++..+.+.+.+-....
T Consensus 120 g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi- 198 (484)
T PRK14956 120 GKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENV- 198 (484)
T ss_pred CCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCC-
Confidence 456689999998877677888877776644455544 44444444443322 457999999999888888776532211
Q ss_pred CCCcchhHHHHHHHHHhcCCchH
Q 038430 123 EDCERLEPIGQKIARKCKGLPIA 145 (677)
Q Consensus 123 ~~~~~~~~~~~~i~~~c~GlPLa 145 (677)
.--.+....|++.++|-+--
T Consensus 199 ---~~e~eAL~~Ia~~S~Gd~Rd 218 (484)
T PRK14956 199 ---QYDQEGLFWIAKKGDGSVRD 218 (484)
T ss_pred ---CCCHHHHHHHHHHcCChHHH
Confidence 12234567889999988743
No 148
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=67.18 E-value=35 Score=35.31 Aligned_cols=93 Identities=14% Similarity=0.083 Sum_probs=66.3
Q ss_pred CccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEEEcCc-hHHHHhcCC-CCeEecCCCChHHHHHHHHHHhhcCCCC
Q 038430 45 GKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTTRN-ELVARMMGS-TNIIFIEQLTEEECWSLFKRLAFFGCSF 122 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiTTR~-~~v~~~~~~-~~~~~v~~L~~~ea~~LF~~~af~~~~~ 122 (677)
+++=.+|+|++...+......+...+..-..+..+|.+|.+ ..+..+.-+ .+.+.+.+++.+++.+.+.... +
T Consensus 107 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~-~---- 181 (334)
T PRK07993 107 GGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAPPPEQYALTWLSREV-T---- 181 (334)
T ss_pred CCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCCCCCHHHHHHHHHHcc-C----
Confidence 45668899999888777888888888876667777777765 456655432 4578999999999888775431 0
Q ss_pred CCCcchhHHHHHHHHHhcCCchHH
Q 038430 123 EDCERLEPIGQKIARKCKGLPIAA 146 (677)
Q Consensus 123 ~~~~~~~~~~~~i~~~c~GlPLal 146 (677)
. -.+-+..++..++|.|...
T Consensus 182 ~----~~~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 182 M----SQDALLAALRLSAGAPGAA 201 (334)
T ss_pred C----CHHHHHHHHHHcCCCHHHH
Confidence 0 1122667889999999644
No 149
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=66.78 E-value=49 Score=36.21 Aligned_cols=98 Identities=13% Similarity=0.072 Sum_probs=65.8
Q ss_pred CccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEEEcC-chHHHHhcC-CCCeEecCCCChHHHHHHHHHHhhcCCCC
Q 038430 45 GKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTTR-NELVARMMG-STNIIFIEQLTEEECWSLFKRLAFFGCSF 122 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiTTR-~~~v~~~~~-~~~~~~v~~L~~~ea~~LF~~~af~~~~~ 122 (677)
+++=++|+|+|...+......+...+..-....++|++|. ...+...+. -...+++++++.++-.+.+.+.+-....
T Consensus 115 ~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi- 193 (491)
T PRK14964 115 SKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENI- 193 (491)
T ss_pred CCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCC-
Confidence 4555899999987765667778888877666666666554 445544332 2458999999999988888887643222
Q ss_pred CCCcchhHHHHHHHHHhcCCchHH
Q 038430 123 EDCERLEPIGQKIARKCKGLPIAA 146 (677)
Q Consensus 123 ~~~~~~~~~~~~i~~~c~GlPLal 146 (677)
.--.+....|++.++|-+-.+
T Consensus 194 ---~i~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 194 ---EHDEESLKLIAENSSGSMRNA 214 (491)
T ss_pred ---CCCHHHHHHHHHHcCCCHHHH
Confidence 112344567888888876533
No 150
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=66.33 E-value=18 Score=32.83 Aligned_cols=53 Identities=13% Similarity=0.083 Sum_probs=35.7
Q ss_pred HHHHHHHHcCCccE-EEEEECCcC---CCccchhhhhhhhcCCCCCcEEEEEcCchH
Q 038430 35 LMSHIHRSIEGKKN-FLILNDVWD---GDYNKWAPFFLCLNHGLHGSKILVTTRNEL 87 (677)
Q Consensus 35 ~~~~i~~~L~~kr~-LlVlDdvw~---~~~~~~~~l~~~~~~~~~gS~IiiTTR~~~ 87 (677)
.-+..++.+....| |||||.+-. ......+.+...+.....+.-||+|.|+..
T Consensus 83 ~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 83 GWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 34455555655555 999999932 123456667777776666778999999763
No 151
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=66.23 E-value=46 Score=39.00 Aligned_cols=99 Identities=12% Similarity=0.102 Sum_probs=67.4
Q ss_pred CccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEEEcCc-hHHHHhcC-CCCeEecCCCChHHHHHHHHHHhhcCCCC
Q 038430 45 GKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTTRN-ELVARMMG-STNIIFIEQLTEEECWSLFKRLAFFGCSF 122 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiTTR~-~~v~~~~~-~~~~~~v~~L~~~ea~~LF~~~af~~~~~ 122 (677)
+++-++|||++...+......+...+..-....++|++|.+ ..+...+- -...|++++|+.++..+.+...+-.. ..
T Consensus 118 gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~E-gI 196 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQE-QL 196 (944)
T ss_pred CCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHc-CC
Confidence 56679999999887767778888888765556666666554 44443321 14589999999999988887755321 11
Q ss_pred CCCcchhHHHHHHHHHhcCCchHHH
Q 038430 123 EDCERLEPIGQKIARKCKGLPIAAK 147 (677)
Q Consensus 123 ~~~~~~~~~~~~i~~~c~GlPLal~ 147 (677)
.--.+....|++.++|.|-.+.
T Consensus 197 ---~~edeAL~lIA~~S~Gd~R~AL 218 (944)
T PRK14949 197 ---PFEAEALTLLAKAANGSMRDAL 218 (944)
T ss_pred ---CCCHHHHHHHHHHcCCCHHHHH
Confidence 1223456778999999775443
No 152
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=66.12 E-value=25 Score=36.67 Aligned_cols=113 Identities=17% Similarity=0.228 Sum_probs=64.6
Q ss_pred CchHHHHHHHHHHH-cCCccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEEE--cCchHHH--Hh-cCCCCeEecCC
Q 038430 29 LSEFQSLMSHIHRS-IEGKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVT--TRNELVA--RM-MGSTNIIFIEQ 102 (677)
Q Consensus 29 ~~~~~~~~~~i~~~-L~~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiT--TR~~~v~--~~-~~~~~~~~v~~ 102 (677)
..+..+.++.-++. ..++|.+|++|.|..-+..+-+. .+|.-.+|..|+|- |-+..-. .- ..-.++|++++
T Consensus 86 vkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~---lLp~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~ 162 (436)
T COG2256 86 VKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDA---LLPHVENGTIILIGATTENPSFELNPALLSRARVFELKP 162 (436)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhhhh---hhhhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeec
Confidence 34555555555333 44899999999997654333333 35555568877774 4333211 00 11256899999
Q ss_pred CChHHHHHHHHHHhhcCCCCC--CCcch-hHHHHHHHHHhcCCch
Q 038430 103 LTEEECWSLFKRLAFFGCSFE--DCERL-EPIGQKIARKCKGLPI 144 (677)
Q Consensus 103 L~~~ea~~LF~~~af~~~~~~--~~~~~-~~~~~~i~~~c~GlPL 144 (677)
|+.++-.++..+-+-.....- ....+ .+.-.-++..++|---
T Consensus 163 L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R 207 (436)
T COG2256 163 LSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDAR 207 (436)
T ss_pred CCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHH
Confidence 999999999988332111110 00112 2345567777777543
No 153
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=65.87 E-value=0.21 Score=54.09 Aligned_cols=85 Identities=20% Similarity=0.210 Sum_probs=44.5
Q ss_pred ccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccc-----cchhhccC-CCcCEEEecCCCCc----cccCccc
Q 038430 328 LRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIER-----LPKTLCEL-YNLQKLDIRGCRNL----RELPTGI 397 (677)
Q Consensus 328 L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~-----lp~~i~~l-~~L~~L~L~~~~~l----~~lp~~i 397 (677)
+..|.+.+|.+.......+-..+..+.+|..|++++|.+.. +-..+... ..|++|++..|... ..+...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 55666665443333333344455667777777887777651 11122222 34566666666511 1223344
Q ss_pred ccccccceeecCccC
Q 038430 398 GKLKNMRSLLNGLTC 412 (677)
Q Consensus 398 ~~l~~L~~L~l~~~~ 412 (677)
.....|+.++++.|.
T Consensus 169 ~~~~~l~~l~l~~n~ 183 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNG 183 (478)
T ss_pred hcccchhHHHHHhcc
Confidence 455566666666664
No 154
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=65.79 E-value=14 Score=36.98 Aligned_cols=90 Identities=12% Similarity=0.080 Sum_probs=63.2
Q ss_pred EEEEECCcCCCccchhhhhhhhcCCCCCcEEEEEcCch-HHHHhcCC-CCeEecCCCChHHHHHHHHHHhhcCCCCCCCc
Q 038430 49 FLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTTRNE-LVARMMGS-TNIIFIEQLTEEECWSLFKRLAFFGCSFEDCE 126 (677)
Q Consensus 49 LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiTTR~~-~v~~~~~~-~~~~~v~~L~~~ea~~LF~~~af~~~~~~~~~ 126 (677)
.+|||+++....+.|..+.....+...-.|.|..|-.- .+..-... ...|.-++|.+++...-+.+.|-..+. +
T Consensus 132 iiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v----~ 207 (346)
T KOG0989|consen 132 IIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEGV----D 207 (346)
T ss_pred EEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcCCCcchHHHHHHHHHHHHHhCC----C
Confidence 67899999988899999999999876666755554332 22221111 346889999999999999888754333 2
Q ss_pred chhHHHHHHHHHhcCC
Q 038430 127 RLEPIGQKIARKCKGL 142 (677)
Q Consensus 127 ~~~~~~~~i~~~c~Gl 142 (677)
-..+.-+.|++.++|-
T Consensus 208 ~d~~al~~I~~~S~Gd 223 (346)
T KOG0989|consen 208 IDDDALKLIAKISDGD 223 (346)
T ss_pred CCHHHHHHHHHHcCCc
Confidence 2345567788888774
No 155
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=65.68 E-value=49 Score=37.93 Aligned_cols=101 Identities=13% Similarity=0.070 Sum_probs=64.9
Q ss_pred CccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEE-EEcCchHHHHhc-CCCCeEecCCCChHHHHHHHHHHhhcCCCC
Q 038430 45 GKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKIL-VTTRNELVARMM-GSTNIIFIEQLTEEECWSLFKRLAFFGCSF 122 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~Ii-iTTR~~~v~~~~-~~~~~~~v~~L~~~ea~~LF~~~af~~~~~ 122 (677)
+++-++|+|++.......+..+...+..-.....+| +||+...+.... .-...+++.+++.++..+.+...+-....
T Consensus 117 g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI- 195 (725)
T PRK07133 117 SKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENI- 195 (725)
T ss_pred CCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCC-
Confidence 455688999998776667777887777654455544 555555554432 22458999999999988888775432211
Q ss_pred CCCcchhHHHHHHHHHhcCCch-HHHHH
Q 038430 123 EDCERLEPIGQKIARKCKGLPI-AAKVI 149 (677)
Q Consensus 123 ~~~~~~~~~~~~i~~~c~GlPL-al~~i 149 (677)
..-.+.+..++..++|-+- |+..+
T Consensus 196 ---~id~eAl~~LA~lS~GslR~AlslL 220 (725)
T PRK07133 196 ---SYEKNALKLIAKLSSGSLRDALSIA 220 (725)
T ss_pred ---CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 1123346778889988654 44433
No 156
>PRK04132 replication factor C small subunit; Provisional
Probab=65.59 E-value=1e+02 Score=36.30 Aligned_cols=98 Identities=12% Similarity=0.012 Sum_probs=66.3
Q ss_pred ccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEEEcCch-HHHHhcCC-CCeEecCCCChHHHHHHHHHHhhcCCCCC
Q 038430 46 KKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTTRNE-LVARMMGS-TNIIFIEQLTEEECWSLFKRLAFFGCSFE 123 (677)
Q Consensus 46 kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiTTR~~-~v~~~~~~-~~~~~v~~L~~~ea~~LF~~~af~~~~~~ 123 (677)
+.-++|+|+++..+......+...+..-....++|++|.+. .+.....+ ...+++++++.++-.+.+.+.+-... ..
T Consensus 630 ~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Eg-i~ 708 (846)
T PRK04132 630 SFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEG-LE 708 (846)
T ss_pred CCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcC-CC
Confidence 34699999999887677788888887654556666665544 44333222 56899999999988887777553221 11
Q ss_pred CCcchhHHHHHHHHHhcCCchHHH
Q 038430 124 DCERLEPIGQKIARKCKGLPIAAK 147 (677)
Q Consensus 124 ~~~~~~~~~~~i~~~c~GlPLal~ 147 (677)
--.+....+++.|+|-+-...
T Consensus 709 ---i~~e~L~~Ia~~s~GDlR~AI 729 (846)
T PRK04132 709 ---LTEEGLQAILYIAEGDMRRAI 729 (846)
T ss_pred ---CCHHHHHHHHHHcCCCHHHHH
Confidence 123467889999999875443
No 157
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=65.11 E-value=17 Score=38.36 Aligned_cols=97 Identities=18% Similarity=0.180 Sum_probs=55.9
Q ss_pred EEEEECCcCCC-----ccchhhhhhhhcCCCCCcEEEEEcCc---------hHHHHhcCCCCeEecCCCChHHHHHHHHH
Q 038430 49 FLILNDVWDGD-----YNKWAPFFLCLNHGLHGSKILVTTRN---------ELVARMMGSTNIIFIEQLTEEECWSLFKR 114 (677)
Q Consensus 49 LlVlDdvw~~~-----~~~~~~l~~~~~~~~~gS~IiiTTR~---------~~v~~~~~~~~~~~v~~L~~~ea~~LF~~ 114 (677)
++++||++... +.+...+...+.. .|-.||+|++. .++..++...-++++.+++.+.-...+.+
T Consensus 178 lllIDDiq~l~gk~~~qeefFh~FN~l~~--~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~k 255 (408)
T COG0593 178 LLLIDDIQFLAGKERTQEEFFHTFNALLE--NGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRK 255 (408)
T ss_pred eeeechHhHhcCChhHHHHHHHHHHHHHh--cCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHH
Confidence 88999996531 1222222223333 34489999953 35555666677999999999999999999
Q ss_pred HhhcCCCCCCCcchhHHHHHHHHHhcCCchHHH
Q 038430 115 LAFFGCSFEDCERLEPIGQKIARKCKGLPIAAK 147 (677)
Q Consensus 115 ~af~~~~~~~~~~~~~~~~~i~~~c~GlPLal~ 147 (677)
++-...-.-+.+...-++..+-....-+.-|+.
T Consensus 256 ka~~~~~~i~~ev~~~la~~~~~nvReLegaL~ 288 (408)
T COG0593 256 KAEDRGIEIPDEVLEFLAKRLDRNVRELEGALN 288 (408)
T ss_pred HHHhcCCCCCHHHHHHHHHHhhccHHHHHHHHH
Confidence 764333322223333344444333333344443
No 158
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=64.99 E-value=75 Score=33.87 Aligned_cols=63 Identities=16% Similarity=0.235 Sum_probs=49.3
Q ss_pred ccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEEEcCchHHHHhc------CCCCeEecCCCChHHHHHH
Q 038430 46 KKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTTRNELVARMM------GSTNIIFIEQLTEEECWSL 111 (677)
Q Consensus 46 kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiTTR~~~v~~~~------~~~~~~~v~~L~~~ea~~L 111 (677)
++..|+||.|... ..|......+.+.++. +|+||+-+..+...- |-...+++.||+-.|-..+
T Consensus 94 ~~~yifLDEIq~v--~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~ 162 (398)
T COG1373 94 EKSYIFLDEIQNV--PDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKL 162 (398)
T ss_pred CCceEEEecccCc--hhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhh
Confidence 6789999999776 7899988888887666 899998877655432 2355899999999887654
No 159
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=64.44 E-value=32 Score=36.78 Aligned_cols=93 Identities=16% Similarity=0.108 Sum_probs=53.0
Q ss_pred EEEEECCcCCCccc-h-hhhhhhhcCC-CCCcEEEEEcCch---------HHHHhcCCCCeEecCCCChHHHHHHHHHHh
Q 038430 49 FLILNDVWDGDYNK-W-APFFLCLNHG-LHGSKILVTTRNE---------LVARMMGSTNIIFIEQLTEEECWSLFKRLA 116 (677)
Q Consensus 49 LlVlDdvw~~~~~~-~-~~l~~~~~~~-~~gS~IiiTTR~~---------~v~~~~~~~~~~~v~~L~~~ea~~LF~~~a 116 (677)
+||+||+....... + +.+...+... ..|..||+||... .+..++....++++++.+.++-.+++.+.+
T Consensus 202 lLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~ 281 (405)
T TIGR00362 202 LLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKA 281 (405)
T ss_pred EEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHH
Confidence 78899997542221 1 2233322211 2355688887631 122233334579999999999999998887
Q ss_pred hcCCCCCCCcchhHHHHHHHHHhcCCchH
Q 038430 117 FFGCSFEDCERLEPIGQKIARKCKGLPIA 145 (677)
Q Consensus 117 f~~~~~~~~~~~~~~~~~i~~~c~GlPLa 145 (677)
-.... . --+++..-|++.+.|-.-.
T Consensus 282 ~~~~~-~---l~~e~l~~ia~~~~~~~r~ 306 (405)
T TIGR00362 282 EEEGL-E---LPDEVLEFIAKNIRSNVRE 306 (405)
T ss_pred HHcCC-C---CCHHHHHHHHHhcCCCHHH
Confidence 43222 1 1234566677777665543
No 160
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=63.97 E-value=4.3 Score=24.18 Aligned_cols=18 Identities=22% Similarity=0.206 Sum_probs=10.1
Q ss_pred CCCcEEEEecCCCCCCCh
Q 038430 555 LNVEKLWILFNGGNILPK 572 (677)
Q Consensus 555 ~~L~~L~l~~~~~~~lp~ 572 (677)
++|+.|++++|.+.++|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 345556666665555553
No 161
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=62.72 E-value=58 Score=36.69 Aligned_cols=100 Identities=13% Similarity=0.057 Sum_probs=66.1
Q ss_pred CccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEEEc-CchHHHHhcC-CCCeEecCCCChHHHHHHHHHHhhcCCCC
Q 038430 45 GKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTT-RNELVARMMG-STNIIFIEQLTEEECWSLFKRLAFFGCSF 122 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiTT-R~~~v~~~~~-~~~~~~v~~L~~~ea~~LF~~~af~~~~~ 122 (677)
+++-++|+|++...+......+...+..-...+++|++| ....+...+. -...++++.++.++....+.+.+-....
T Consensus 131 a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi- 209 (598)
T PRK09111 131 ARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGV- 209 (598)
T ss_pred CCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCC-
Confidence 345578999998776566777888877665566665554 4444544432 2458999999999988888776532221
Q ss_pred CCCcchhHHHHHHHHHhcCCchHHHH
Q 038430 123 EDCERLEPIGQKIARKCKGLPIAAKV 148 (677)
Q Consensus 123 ~~~~~~~~~~~~i~~~c~GlPLal~~ 148 (677)
. --.+....|+..++|-+..+..
T Consensus 210 ~---i~~eAl~lIa~~a~Gdlr~al~ 232 (598)
T PRK09111 210 E---VEDEALALIARAAEGSVRDGLS 232 (598)
T ss_pred C---CCHHHHHHHHHHcCCCHHHHHH
Confidence 1 1234567788899988765543
No 162
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=62.17 E-value=46 Score=37.74 Aligned_cols=100 Identities=13% Similarity=0.082 Sum_probs=66.2
Q ss_pred CccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEEEcCc-hHHHHhcC-CCCeEecCCCChHHHHHHHHHHhhcCCCC
Q 038430 45 GKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTTRN-ELVARMMG-STNIIFIEQLTEEECWSLFKRLAFFGCSF 122 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiTTR~-~~v~~~~~-~~~~~~v~~L~~~ea~~LF~~~af~~~~~ 122 (677)
+++-++|+|+|...+......+...+..-....++|++|.+ ..+...+- -...|++++++.++..+.+.+.+-....
T Consensus 118 g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i- 196 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQI- 196 (647)
T ss_pred CCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCC-
Confidence 56668999999887767788888888776555555555544 44443321 1468999999999998888775422111
Q ss_pred CCCcchhHHHHHHHHHhcCCchHHHH
Q 038430 123 EDCERLEPIGQKIARKCKGLPIAAKV 148 (677)
Q Consensus 123 ~~~~~~~~~~~~i~~~c~GlPLal~~ 148 (677)
..-......|++.++|.+-....
T Consensus 197 ---~~e~~aL~~Ia~~s~Gs~R~Al~ 219 (647)
T PRK07994 197 ---PFEPRALQLLARAADGSMRDALS 219 (647)
T ss_pred ---CCCHHHHHHHHHHcCCCHHHHHH
Confidence 11234456788999997764433
No 163
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=60.63 E-value=65 Score=36.12 Aligned_cols=101 Identities=14% Similarity=0.121 Sum_probs=64.4
Q ss_pred ccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEEEc-CchHHHHhc-CCCCeEecCCCChHHHHHHHHHHhhcCCCCC
Q 038430 46 KKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTT-RNELVARMM-GSTNIIFIEQLTEEECWSLFKRLAFFGCSFE 123 (677)
Q Consensus 46 kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiTT-R~~~v~~~~-~~~~~~~v~~L~~~ea~~LF~~~af~~~~~~ 123 (677)
++=++|+|++...+...+..+...+..-.....+|++| .-..+.... .-...+++.+++.++....+...+-.... .
T Consensus 119 ~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi-~ 197 (605)
T PRK05896 119 KYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKI-K 197 (605)
T ss_pred CcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCC-C
Confidence 34469999998776667778888887655556665554 444444332 22458999999999988888776532221 1
Q ss_pred CCcchhHHHHHHHHHhcCCc-hHHHHHH
Q 038430 124 DCERLEPIGQKIARKCKGLP-IAAKVIG 150 (677)
Q Consensus 124 ~~~~~~~~~~~i~~~c~GlP-Lal~~ig 150 (677)
--.+.+..+++.++|-+ .|+..+-
T Consensus 198 ---Is~eal~~La~lS~GdlR~AlnlLe 222 (605)
T PRK05896 198 ---IEDNAIDKIADLADGSLRDGLSILD 222 (605)
T ss_pred ---CCHHHHHHHHHHcCCcHHHHHHHHH
Confidence 12344677888998855 4444443
No 164
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=60.45 E-value=45 Score=35.07 Aligned_cols=96 Identities=15% Similarity=0.143 Sum_probs=59.8
Q ss_pred CccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEEEc-CchHHHHhc-CCCCeEecCCCChHHHHHHHHHHhhcCCCC
Q 038430 45 GKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTT-RNELVARMM-GSTNIIFIEQLTEEECWSLFKRLAFFGCSF 122 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiTT-R~~~v~~~~-~~~~~~~v~~L~~~ea~~LF~~~af~~~~~ 122 (677)
+++-+||+|++.......+..+...+........+|++| +...+.... .....++.++++.++....+...+-....
T Consensus 107 ~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~- 185 (367)
T PRK14970 107 GKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGI- 185 (367)
T ss_pred CCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhcceeEecCCccHHHHHHHHHHHHHHcCC-
Confidence 455689999997654455666766665544455555555 333333222 12347999999999988888876643222
Q ss_pred CCCcchhHHHHHHHHHhcCCch
Q 038430 123 EDCERLEPIGQKIARKCKGLPI 144 (677)
Q Consensus 123 ~~~~~~~~~~~~i~~~c~GlPL 144 (677)
. --.+....++..++|-+-
T Consensus 186 ~---i~~~al~~l~~~~~gdlr 204 (367)
T PRK14970 186 K---FEDDALHIIAQKADGALR 204 (367)
T ss_pred C---CCHHHHHHHHHhCCCCHH
Confidence 1 123556778888888554
No 165
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=59.81 E-value=51 Score=36.48 Aligned_cols=100 Identities=12% Similarity=0.064 Sum_probs=66.4
Q ss_pred CccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEEEcCch-HHHHhcC-CCCeEecCCCChHHHHHHHHHHhhcCCCC
Q 038430 45 GKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTTRNE-LVARMMG-STNIIFIEQLTEEECWSLFKRLAFFGCSF 122 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiTTR~~-~v~~~~~-~~~~~~v~~L~~~ea~~LF~~~af~~~~~ 122 (677)
+++-++|+|++...+......+...+..-....++|++|.+. .+..... -...++.++++.++..+.+...+-....
T Consensus 116 ~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi- 194 (535)
T PRK08451 116 ARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGV- 194 (535)
T ss_pred CCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCC-
Confidence 445688999998776667777888887765667777777654 2222111 1458999999999988887765532221
Q ss_pred CCCcchhHHHHHHHHHhcCCchHHHH
Q 038430 123 EDCERLEPIGQKIARKCKGLPIAAKV 148 (677)
Q Consensus 123 ~~~~~~~~~~~~i~~~c~GlPLal~~ 148 (677)
. --.+....+++.++|-+-.+..
T Consensus 195 ~---i~~~Al~~Ia~~s~GdlR~aln 217 (535)
T PRK08451 195 S---YEPEALEILARSGNGSLRDTLT 217 (535)
T ss_pred C---CCHHHHHHHHHHcCCcHHHHHH
Confidence 1 1234567888999998855443
No 166
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=59.47 E-value=3.6 Score=23.74 Aligned_cols=14 Identities=36% Similarity=0.418 Sum_probs=6.2
Q ss_pred CCcCEEEecCcccc
Q 038430 354 MHLKYLNLSELHIE 367 (677)
Q Consensus 354 ~~L~~L~Ls~~~i~ 367 (677)
++|++|+|++|.|+
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 44555555555543
No 167
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=58.91 E-value=41 Score=35.40 Aligned_cols=94 Identities=12% Similarity=-0.023 Sum_probs=54.5
Q ss_pred CccEEEEEECCcCCC-----------cc---chhhhhhhhcCC--CCCcEEEEEcCchHHHHh-----cCCCCeEecCCC
Q 038430 45 GKKNFLILNDVWDGD-----------YN---KWAPFFLCLNHG--LHGSKILVTTRNELVARM-----MGSTNIIFIEQL 103 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~-----------~~---~~~~l~~~~~~~--~~gS~IiiTTR~~~v~~~-----~~~~~~~~v~~L 103 (677)
....+|++|+++... .. .+..+...+... ..+.+||.||........ ...+..++++..
T Consensus 214 ~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P 293 (364)
T TIGR01242 214 KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLP 293 (364)
T ss_pred cCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCc
Confidence 356799999996531 01 111222222211 235678888875433221 122558999999
Q ss_pred ChHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHhcCCc
Q 038430 104 TEEECWSLFKRLAFFGCSFEDCERLEPIGQKIARKCKGLP 143 (677)
Q Consensus 104 ~~~ea~~LF~~~af~~~~~~~~~~~~~~~~~i~~~c~GlP 143 (677)
+.++..++|..++.+..... .-+ ...++..+.|..
T Consensus 294 ~~~~r~~Il~~~~~~~~l~~-~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 294 DFEGRLEILKIHTRKMKLAE-DVD----LEAIAKMTEGAS 328 (364)
T ss_pred CHHHHHHHHHHHHhcCCCCc-cCC----HHHHHHHcCCCC
Confidence 99999999998875433221 112 355667776654
No 168
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=57.37 E-value=73 Score=34.52 Aligned_cols=70 Identities=21% Similarity=0.168 Sum_probs=42.6
Q ss_pred EEEEEECCcCCCccch--hhhhhhhcCC-CCCcEEEEEcCc---------hHHHHhcCCCCeEecCCCChHHHHHHHHHH
Q 038430 48 NFLILNDVWDGDYNKW--APFFLCLNHG-LHGSKILVTTRN---------ELVARMMGSTNIIFIEQLTEEECWSLFKRL 115 (677)
Q Consensus 48 ~LlVlDdvw~~~~~~~--~~l~~~~~~~-~~gS~IiiTTR~---------~~v~~~~~~~~~~~v~~L~~~ea~~LF~~~ 115 (677)
-++++||+.......+ +.+...+... ..|..||+||.. ..+..++....++++++++.++-.+++.++
T Consensus 204 dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k 283 (445)
T PRK12422 204 DALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERK 283 (445)
T ss_pred CEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHH
Confidence 3788899965422222 1222222111 135578888854 233334444568999999999999999887
Q ss_pred hh
Q 038430 116 AF 117 (677)
Q Consensus 116 af 117 (677)
+-
T Consensus 284 ~~ 285 (445)
T PRK12422 284 AE 285 (445)
T ss_pred HH
Confidence 74
No 169
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=56.47 E-value=1.2e+02 Score=34.13 Aligned_cols=103 Identities=12% Similarity=0.087 Sum_probs=66.9
Q ss_pred CccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEEEc-CchHHHHhcC-CCCeEecCCCChHHHHHHHHHHhhcCCCC
Q 038430 45 GKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTT-RNELVARMMG-STNIIFIEQLTEEECWSLFKRLAFFGCSF 122 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiTT-R~~~v~~~~~-~~~~~~v~~L~~~ea~~LF~~~af~~~~~ 122 (677)
+++-++|+|++...+......+...+..-.....+|++| ....+..... -...|+.+.++.++..+.+.+.+-....
T Consensus 117 ~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi- 195 (584)
T PRK14952 117 SRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGV- 195 (584)
T ss_pred CCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCC-
Confidence 455588999998877677788888888765566655554 4445444332 2468999999999988888775532221
Q ss_pred CCCcchhHHHHHHHHHhcCCch-HHHHHHH
Q 038430 123 EDCERLEPIGQKIARKCKGLPI-AAKVIGN 151 (677)
Q Consensus 123 ~~~~~~~~~~~~i~~~c~GlPL-al~~ig~ 151 (677)
. --.+....|+..++|-+- |+..+-.
T Consensus 196 ~---i~~~al~~Ia~~s~GdlR~aln~Ldq 222 (584)
T PRK14952 196 V---VDDAVYPLVIRAGGGSPRDTLSVLDQ 222 (584)
T ss_pred C---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 1 123345678888888664 4444433
No 170
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=56.35 E-value=1.1e+02 Score=33.21 Aligned_cols=93 Identities=15% Similarity=0.110 Sum_probs=52.4
Q ss_pred ccEEEEEECCcCCCc-cch-hhhhhhhcC-CCCCcEEEEEcC-chH--------HHHhcCCCCeEecCCCChHHHHHHHH
Q 038430 46 KKNFLILNDVWDGDY-NKW-APFFLCLNH-GLHGSKILVTTR-NEL--------VARMMGSTNIIFIEQLTEEECWSLFK 113 (677)
Q Consensus 46 kr~LlVlDdvw~~~~-~~~-~~l~~~~~~-~~~gS~IiiTTR-~~~--------v~~~~~~~~~~~v~~L~~~ea~~LF~ 113 (677)
+.-+||+||+..... ..+ ..+...+.. ...|..||+||. ... +..++....++++++.+.++-.+++.
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~ 273 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIAR 273 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHH
Confidence 344899999974311 111 122222221 123456888884 322 22223345588999999999999998
Q ss_pred HHhhcCCCCCCCcchhHHHHHHHHHhcCC
Q 038430 114 RLAFFGCSFEDCERLEPIGQKIARKCKGL 142 (677)
Q Consensus 114 ~~af~~~~~~~~~~~~~~~~~i~~~c~Gl 142 (677)
+.+-.... . --.++..-|++++.|-
T Consensus 274 ~~~~~~~~-~---l~~ev~~~Ia~~~~~~ 298 (440)
T PRK14088 274 KMLEIEHG-E---LPEEVLNFVAENVDDN 298 (440)
T ss_pred HHHHhcCC-C---CCHHHHHHHHhccccC
Confidence 88743211 1 1234566677766664
No 171
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=56.29 E-value=2.6e+02 Score=29.35 Aligned_cols=115 Identities=13% Similarity=0.177 Sum_probs=69.9
Q ss_pred eEEecCCCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHcC--CccEEEEEECCcCCCccchhhhhhhhcCCCC-CcE
Q 038430 2 WVCVSDTFEEISVANAIIEGLGESTSSLSEFQSLMSHIHRSIE--GKKNFLILNDVWDGDYNKWAPFFLCLNHGLH-GSK 78 (677)
Q Consensus 2 WV~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~i~~~L~--~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~-gS~ 78 (677)
.|+.-...+..+++.+|+++++..........+.-+.+.+.+. ++.+.||||+++..-...-+.+...+..... .++
T Consensus 77 yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~ 156 (366)
T COG1474 77 YINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVK 156 (366)
T ss_pred EEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcccccee
Confidence 4666778899999999999997544444556666666666665 5889999999976422111333333333322 344
Q ss_pred EE--EEcCchHHHHhcCC-------CCeEecCCCChHHHHHHHHHHh
Q 038430 79 IL--VTTRNELVARMMGS-------TNIIFIEQLTEEECWSLFKRLA 116 (677)
Q Consensus 79 Ii--iTTR~~~v~~~~~~-------~~~~~v~~L~~~ea~~LF~~~a 116 (677)
|+ ..+-+......+.. ...+..++-+.+|-.+.....+
T Consensus 157 v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~ 203 (366)
T COG1474 157 VSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERV 203 (366)
T ss_pred EEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHH
Confidence 33 33334333333221 2236677778888888777765
No 172
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=55.15 E-value=1.2e+02 Score=34.10 Aligned_cols=99 Identities=11% Similarity=0.092 Sum_probs=64.7
Q ss_pred CccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEEEcCc-hHHHHhcC-CCCeEecCCCChHHHHHHHHHHhhcCCCC
Q 038430 45 GKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTTRN-ELVARMMG-STNIIFIEQLTEEECWSLFKRLAFFGCSF 122 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiTTR~-~~v~~~~~-~~~~~~v~~L~~~ea~~LF~~~af~~~~~ 122 (677)
+++-++|+|++...+...+..+...+..-.....+|++|.. ..+..... -...++.++++.++-.+.+...+.....
T Consensus 118 ~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi- 196 (563)
T PRK06647 118 SRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQI- 196 (563)
T ss_pred CCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCC-
Confidence 55668999999877666677788777765556666666543 44433321 2447899999999888888776643222
Q ss_pred CCCcchhHHHHHHHHHhcCCchHHH
Q 038430 123 EDCERLEPIGQKIARKCKGLPIAAK 147 (677)
Q Consensus 123 ~~~~~~~~~~~~i~~~c~GlPLal~ 147 (677)
.--.+....++..++|-+-.+.
T Consensus 197 ---~id~eAl~lLa~~s~GdlR~al 218 (563)
T PRK06647 197 ---KYEDEALKWIAYKSTGSVRDAY 218 (563)
T ss_pred ---CCCHHHHHHHHHHcCCCHHHHH
Confidence 1123456668888888765443
No 173
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=54.97 E-value=7.1 Score=23.06 Aligned_cols=14 Identities=43% Similarity=0.638 Sum_probs=6.8
Q ss_pred cCCCeEEEeCCCCC
Q 038430 578 TNLSDLKLVFCENC 591 (677)
Q Consensus 578 ~~L~~L~l~~c~~~ 591 (677)
++|+.|+|++|..+
T Consensus 2 ~~L~~L~l~~C~~i 15 (26)
T smart00367 2 PNLRELDLSGCTNI 15 (26)
T ss_pred CCCCEeCCCCCCCc
Confidence 34555555555433
No 174
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=54.15 E-value=1.5e+02 Score=28.09 Aligned_cols=104 Identities=9% Similarity=0.085 Sum_probs=62.9
Q ss_pred CCHHHHHHHHHHHhcCCCCC-----CchHHHH---HHHHHHHcCCccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEE
Q 038430 9 FEEISVANAIIEGLGESTSS-----LSEFQSL---MSHIHRSIEGKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKIL 80 (677)
Q Consensus 9 ~~~~~i~~~i~~~l~~~~~~-----~~~~~~~---~~~i~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~Ii 80 (677)
-|++....++...++..... .-.+++. +..+.-.-..+|+ |+|++...+...+..+...+..-..+..+|
T Consensus 11 ~d~e~~~~~l~~~~~~~~~~~f~~~~i~Vd~iReii~~~~~~~~~~k~--iI~~a~~l~~~A~NaLLK~LEEPp~~~~fi 88 (206)
T PRK08485 11 SDFEESKEELINEFGKKNLRFFIKEEFKIEDAKEVIAEAYIAESEEKI--IVIAAPSYGIEAQNALLKILEEPPKNICFI 88 (206)
T ss_pred CCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHhhCCCCcEE--EEEchHhhCHHHHHHHHHHhcCCCCCeEEE
Confidence 35666777777777665421 1233333 3322222223443 567898777678888888887765666666
Q ss_pred EEcCch-HHHHhcCC--------------CCeEecCCCChHHHHHHHHH
Q 038430 81 VTTRNE-LVARMMGS--------------TNIIFIEQLTEEECWSLFKR 114 (677)
Q Consensus 81 iTTR~~-~v~~~~~~--------------~~~~~v~~L~~~ea~~LF~~ 114 (677)
++|.+. .+..+.-+ ...+.+++|+.++..+.+..
T Consensus 89 L~t~~~~~llpTI~SRc~~~~~~~~~~~~~l~l~l~~l~~~~i~~~L~~ 137 (206)
T PRK08485 89 IVAKSKNLLLPTIRSRLIIEKRKQKKPVKPLDLDLKKLDLKDIYEFLKE 137 (206)
T ss_pred EEeCChHhCchHHHhhheeccccccccccccccccCCCCHHHHHHHHHH
Confidence 666554 34443221 12477899999999888876
No 175
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=53.81 E-value=74 Score=35.15 Aligned_cols=99 Identities=13% Similarity=0.062 Sum_probs=61.9
Q ss_pred CccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEEEcCc-hHHHHhcC-CCCeEecCCCChHHHHHHHHHHhhcCCCC
Q 038430 45 GKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTTRN-ELVARMMG-STNIIFIEQLTEEECWSLFKRLAFFGCSF 122 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiTTR~-~~v~~~~~-~~~~~~v~~L~~~ea~~LF~~~af~~~~~ 122 (677)
++.-++|+|+|...+......+...+..-....++|++|.+ ..+..... -...+++++++.++-.+.+...+-....
T Consensus 118 ~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi- 196 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENV- 196 (509)
T ss_pred CCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCC-
Confidence 45558889999887666777788888776556766665544 34433321 1357889999998876665554422211
Q ss_pred CCCcchhHHHHHHHHHhcCCchHHH
Q 038430 123 EDCERLEPIGQKIARKCKGLPIAAK 147 (677)
Q Consensus 123 ~~~~~~~~~~~~i~~~c~GlPLal~ 147 (677)
. --.+....+++.++|-+-.+.
T Consensus 197 ~---~~~~al~~ia~~s~GslR~al 218 (509)
T PRK14958 197 E---FENAALDLLARAANGSVRDAL 218 (509)
T ss_pred C---CCHHHHHHHHHHcCCcHHHHH
Confidence 1 112345668888888765443
No 176
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=53.76 E-value=10 Score=22.68 Aligned_cols=14 Identities=36% Similarity=0.477 Sum_probs=7.4
Q ss_pred CCcCEEEecCcccc
Q 038430 354 MHLKYLNLSELHIE 367 (677)
Q Consensus 354 ~~L~~L~Ls~~~i~ 367 (677)
.+|+.|++++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 34555555555554
No 177
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=53.62 E-value=49 Score=35.96 Aligned_cols=117 Identities=15% Similarity=0.072 Sum_probs=64.6
Q ss_pred EEEEEECCcCCCccc-h-hhhhhhhcC-CCCCcEEEEEcCch---------HHHHhcCCCCeEecCCCChHHHHHHHHHH
Q 038430 48 NFLILNDVWDGDYNK-W-APFFLCLNH-GLHGSKILVTTRNE---------LVARMMGSTNIIFIEQLTEEECWSLFKRL 115 (677)
Q Consensus 48 ~LlVlDdvw~~~~~~-~-~~l~~~~~~-~~~gS~IiiTTR~~---------~v~~~~~~~~~~~v~~L~~~ea~~LF~~~ 115 (677)
-+||+|||....... + +.+...+.. ...|..||+||... .+..++....++++++.+.++-.+++.+.
T Consensus 213 dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~ 292 (450)
T PRK00149 213 DVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKK 292 (450)
T ss_pred CEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHH
Confidence 388999996532111 1 223332221 12345688888643 22334444568999999999999999998
Q ss_pred hhcCCCCCCCcchhHHHHHHHHHhcCCchHH----HHHHH---HhccCCCHHHHHHHHhh
Q 038430 116 AFFGCSFEDCERLEPIGQKIARKCKGLPIAA----KVIGN---LLRSKSTIKDWQRILDS 168 (677)
Q Consensus 116 af~~~~~~~~~~~~~~~~~i~~~c~GlPLal----~~ig~---~L~~~~~~~~w~~~l~~ 168 (677)
+-.... .--.++..-|++.+.|-.-.+ ..+.. .....-+....+.+++.
T Consensus 293 ~~~~~~----~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~ 348 (450)
T PRK00149 293 AEEEGI----DLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKD 348 (450)
T ss_pred HHHcCC----CCCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHH
Confidence 743211 122345667777777765433 22222 12222455556666653
No 178
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=53.54 E-value=1.1e+02 Score=32.03 Aligned_cols=111 Identities=14% Similarity=0.241 Sum_probs=64.5
Q ss_pred CeEEecCCCCHHHHHHHHHHHhcCCCCC--C-----chHHHHHHHHHH--HcC--CccEEEEEECCcCCCccch------
Q 038430 1 MWVCVSDTFEEISVANAIIEGLGESTSS--L-----SEFQSLMSHIHR--SIE--GKKNFLILNDVWDGDYNKW------ 63 (677)
Q Consensus 1 ~WV~vs~~~~~~~i~~~i~~~l~~~~~~--~-----~~~~~~~~~i~~--~L~--~kr~LlVlDdvw~~~~~~~------ 63 (677)
+||++-..|+..-++.+|+.+.+..+.+ . .+....+..+.+ ... ++.++||||+++...+..-
T Consensus 59 vw~n~~ecft~~~lle~IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l 138 (438)
T KOG2543|consen 59 VWLNCVECFTYAILLEKILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCL 138 (438)
T ss_pred eeeehHHhccHHHHHHHHHHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHH
Confidence 5999999999999999999999633221 1 222333444444 122 4689999999965422111
Q ss_pred hhhhhhhcCCCCCcEEEEEcCchHHHHh---cCCCC--eEecCCCChHHHHHHHHH
Q 038430 64 APFFLCLNHGLHGSKILVTTRNELVARM---MGSTN--IIFIEQLTEEECWSLFKR 114 (677)
Q Consensus 64 ~~l~~~~~~~~~gS~IiiTTR~~~v~~~---~~~~~--~~~v~~L~~~ea~~LF~~ 114 (677)
.++...++. + -.+|+++-...-... +|+.. ++..+.-+.+|-.+++.+
T Consensus 139 ~~L~el~~~--~-~i~iils~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~ 191 (438)
T KOG2543|consen 139 FRLYELLNE--P-TIVIILSAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSR 191 (438)
T ss_pred HHHHHHhCC--C-ceEEEEeccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhc
Confidence 112222222 2 334455433222111 34433 566788889999888876
No 179
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=52.85 E-value=1e+02 Score=31.83 Aligned_cols=70 Identities=13% Similarity=0.139 Sum_probs=51.0
Q ss_pred CccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEEEcCch-HHHHhcCC-CCeEecCCCChHHHHHHHHH
Q 038430 45 GKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTTRNE-LVARMMGS-TNIIFIEQLTEEECWSLFKR 114 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiTTR~~-~v~~~~~~-~~~~~v~~L~~~ea~~LF~~ 114 (677)
+.+=.+|+|++...+......+...+..-..++.+|++|.+. .+...... ...+++++++.++..+.+..
T Consensus 109 ~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 109 SNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred cCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHH
Confidence 445568899998877667778888888766677788777654 34333322 55899999999998777765
No 180
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=51.54 E-value=1.5e+02 Score=33.72 Aligned_cols=100 Identities=9% Similarity=0.010 Sum_probs=64.1
Q ss_pred CccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEEEcC-chHHHHhcC-CCCeEecCCCChHHHHHHHHHHhhcCCCC
Q 038430 45 GKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTTR-NELVARMMG-STNIIFIEQLTEEECWSLFKRLAFFGCSF 122 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiTTR-~~~v~~~~~-~~~~~~v~~L~~~ea~~LF~~~af~~~~~ 122 (677)
+++-++|+|++...+...+..+...+..-.....+|++|. ...+..... -...++...++.++....+.+.+-....
T Consensus 120 ~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi- 198 (620)
T PRK14948 120 ARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESI- 198 (620)
T ss_pred CCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCC-
Confidence 4455889999987766677788888876544555555444 444444332 2457888899998888777765532211
Q ss_pred CCCcchhHHHHHHHHHhcCCchHHHH
Q 038430 123 EDCERLEPIGQKIARKCKGLPIAAKV 148 (677)
Q Consensus 123 ~~~~~~~~~~~~i~~~c~GlPLal~~ 148 (677)
. --.+....+++.++|-+..+..
T Consensus 199 ~---is~~al~~La~~s~G~lr~A~~ 221 (620)
T PRK14948 199 E---IEPEALTLVAQRSQGGLRDAES 221 (620)
T ss_pred C---CCHHHHHHHHHHcCCCHHHHHH
Confidence 1 1124577888999987765543
No 181
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=51.51 E-value=45 Score=33.90 Aligned_cols=94 Identities=11% Similarity=0.084 Sum_probs=62.4
Q ss_pred CccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEEEc-CchHHHHhcC-CCCeEecCCCChHHHHHHHHHHhhcCCCC
Q 038430 45 GKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTT-RNELVARMMG-STNIIFIEQLTEEECWSLFKRLAFFGCSF 122 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiTT-R~~~v~~~~~-~~~~~~v~~L~~~ea~~LF~~~af~~~~~ 122 (677)
+.+=++|+|++...+......+...+..-..++.+|++| ....+..... -.+.++..+++.++..+.+.... .
T Consensus 89 ~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~~~----~- 163 (299)
T PRK07132 89 SQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLSKN----K- 163 (299)
T ss_pred CCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHHcC----C-
Confidence 467788899997776667778888888877777777655 4445554432 25689999999998877665531 1
Q ss_pred CCCcchhHHHHHHHHHhcCCchHHHH
Q 038430 123 EDCERLEPIGQKIARKCKGLPIAAKV 148 (677)
Q Consensus 123 ~~~~~~~~~~~~i~~~c~GlPLal~~ 148 (677)
-++.+..++...+|.=-|+..
T Consensus 164 -----~~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 164 -----EKEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred -----ChhHHHHHHHHcCCHHHHHHH
Confidence 112355566666663345544
No 182
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=50.03 E-value=48 Score=30.16 Aligned_cols=59 Identities=15% Similarity=0.197 Sum_probs=39.9
Q ss_pred CccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEEEcCchH-HHHhcCC-CCeEecCCC
Q 038430 45 GKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTTRNEL-VARMMGS-TNIIFIEQL 103 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiTTR~~~-v~~~~~~-~~~~~v~~L 103 (677)
+++=.+|+||+...+...+..+...+..-..++++|++|++.. +....-. ...+.+++|
T Consensus 101 ~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SRc~~i~~~~l 161 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRSRCQVIRFRPL 161 (162)
T ss_dssp SSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTTSEEEEE---
T ss_pred CCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhhceEEecCCC
Confidence 3456889999999888889999999988888899998888664 4444322 345666554
No 183
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=49.06 E-value=82 Score=35.47 Aligned_cols=101 Identities=13% Similarity=0.070 Sum_probs=62.6
Q ss_pred CccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEE-EcCchHHHHhcC-CCCeEecCCCChHHHHHHHHHHhhcCCCC
Q 038430 45 GKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILV-TTRNELVARMMG-STNIIFIEQLTEEECWSLFKRLAFFGCSF 122 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~Iii-TTR~~~v~~~~~-~~~~~~v~~L~~~ea~~LF~~~af~~~~~ 122 (677)
+++-++|+|+|...+......+...+..-....++|+ ||....+..... -...++.++++.++....+...+-....
T Consensus 118 ~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi- 196 (576)
T PRK14965 118 SRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGI- 196 (576)
T ss_pred CCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCC-
Confidence 3445788999987765667778888876555555554 554455554432 2457889999998887777664422111
Q ss_pred CCCcchhHHHHHHHHHhcCCc-hHHHHH
Q 038430 123 EDCERLEPIGQKIARKCKGLP-IAAKVI 149 (677)
Q Consensus 123 ~~~~~~~~~~~~i~~~c~GlP-Lal~~i 149 (677)
. --.+....+++.++|-. .|+..+
T Consensus 197 ~---i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 197 S---ISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred C---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 1 12344667888888854 444444
No 184
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=48.73 E-value=43 Score=28.93 Aligned_cols=44 Identities=11% Similarity=0.151 Sum_probs=26.7
Q ss_pred CCccEEEEEECCcCCCccchhhhhhhhcCC------CCCcEEEEEcCchH
Q 038430 44 EGKKNFLILNDVWDGDYNKWAPFFLCLNHG------LHGSKILVTTRNEL 87 (677)
Q Consensus 44 ~~kr~LlVlDdvw~~~~~~~~~l~~~~~~~------~~gS~IiiTTR~~~ 87 (677)
..++.++|+||++.........+...+... ..+.+||+||....
T Consensus 82 ~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 82 KAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred cCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 457789999999864222223333333332 35778888887543
No 185
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=48.50 E-value=14 Score=36.34 Aligned_cols=56 Identities=14% Similarity=0.214 Sum_probs=33.9
Q ss_pred CeEEecCC--CCHHHHHHHH-----HHHhcCCCCCC-chHHHHHHHHHHH-cCCccEEEEEECCc
Q 038430 1 MWVCVSDT--FEEISVANAI-----IEGLGESTSSL-SEFQSLMSHIHRS-IEGKKNFLILNDVW 56 (677)
Q Consensus 1 ~WV~vs~~--~~~~~i~~~i-----~~~l~~~~~~~-~~~~~~~~~i~~~-L~~kr~LlVlDdvw 56 (677)
+||.++.. +++.+++++| +.+++.+.... .-........... -.++++++++|++-
T Consensus 49 ~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~a~~~~~~G~~vll~iDei~ 113 (249)
T cd01128 49 LIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEKAKRLVEHGKDVVILLDSIT 113 (249)
T ss_pred EEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHH
Confidence 49998887 8999999999 44443321111 1111222222222 24799999999994
No 186
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=48.26 E-value=8.3 Score=41.66 Aligned_cols=65 Identities=23% Similarity=0.129 Sum_probs=46.3
Q ss_pred CCCCCCcEEEEecCCCCCCCh--hHh-hccCCCeEEEeCCCC-C---CcCCCCCCcccceeeccccccceEe
Q 038430 552 QPPLNVEKLWILFNGGNILPK--WLT-SLTNLSDLKLVFCEN-C---EQLPPLGKLPLEKLELCHLKSVKRV 616 (677)
Q Consensus 552 ~~~~~L~~L~l~~~~~~~lp~--~~~-~l~~L~~L~l~~c~~-~---~~l~~l~~l~L~~L~l~~~~~l~~i 616 (677)
.+.+.+..+.|++|.+..+.. .+. ..|+|+.|+|++|.. + .+++.++.+||++|-+.+.+-.+..
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf 286 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTF 286 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccch
Confidence 356788999999998765532 222 679999999999832 2 3455677777999999986644433
No 187
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=47.84 E-value=1.1e+02 Score=34.06 Aligned_cols=96 Identities=13% Similarity=0.046 Sum_probs=61.5
Q ss_pred CccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEEEcCch-HHHHhcC-CCCeEecCCCChHHHHHHHHHHhhcCCCC
Q 038430 45 GKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTTRNE-LVARMMG-STNIIFIEQLTEEECWSLFKRLAFFGCSF 122 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiTTR~~-~v~~~~~-~~~~~~v~~L~~~ea~~LF~~~af~~~~~ 122 (677)
+++-++|+|++...+......+...+..-....++|++|.+. .+...+. -...++++.++.++-.+.+.+.+-....
T Consensus 118 ~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi- 196 (527)
T PRK14969 118 GRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENI- 196 (527)
T ss_pred CCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC-
Confidence 456689999998776556777777887755566666666443 3332211 1347899999999888777765432211
Q ss_pred CCCcchhHHHHHHHHHhcCCch
Q 038430 123 EDCERLEPIGQKIARKCKGLPI 144 (677)
Q Consensus 123 ~~~~~~~~~~~~i~~~c~GlPL 144 (677)
..-......+++.++|.+-
T Consensus 197 ---~~~~~al~~la~~s~Gslr 215 (527)
T PRK14969 197 ---PFDATALQLLARAAAGSMR 215 (527)
T ss_pred ---CCCHHHHHHHHHHcCCCHH
Confidence 1123345778888999664
No 188
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=46.47 E-value=18 Score=34.82 Aligned_cols=47 Identities=23% Similarity=0.191 Sum_probs=30.3
Q ss_pred ccEEEEEECCcCC-CccchhhhhhhhcCCCCCcEEEEEcCchHHHHhc
Q 038430 46 KKNFLILNDVWDG-DYNKWAPFFLCLNHGLHGSKILVTTRNELVARMM 92 (677)
Q Consensus 46 kr~LlVlDdvw~~-~~~~~~~l~~~~~~~~~gS~IiiTTR~~~v~~~~ 92 (677)
..=++|||||... +......+...+....+.+.+||||-++.+...+
T Consensus 158 ~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a 205 (220)
T PF02463_consen 158 PSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDA 205 (220)
T ss_dssp --SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3448899999654 2344555666676666678999999999888765
No 189
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=46.45 E-value=1.5e+02 Score=32.59 Aligned_cols=99 Identities=14% Similarity=0.117 Sum_probs=61.2
Q ss_pred CccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEEEc-CchHHHHhc-CCCCeEecCCCChHHHHHHHHHHhhcCCCC
Q 038430 45 GKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTT-RNELVARMM-GSTNIIFIEQLTEEECWSLFKRLAFFGCSF 122 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiTT-R~~~v~~~~-~~~~~~~v~~L~~~ea~~LF~~~af~~~~~ 122 (677)
+++-++|+|++..........+...+........+|++| +...+.... .....+++.+++.++-...+...+-....
T Consensus 118 ~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi- 196 (486)
T PRK14953 118 GKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKI- 196 (486)
T ss_pred CCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCC-
Confidence 456689999997765455667777776654455555544 444443322 12347899999999888777775532221
Q ss_pred CCCcchhHHHHHHHHHhcCCchHHH
Q 038430 123 EDCERLEPIGQKIARKCKGLPIAAK 147 (677)
Q Consensus 123 ~~~~~~~~~~~~i~~~c~GlPLal~ 147 (677)
..-.+....++..++|.+-.+.
T Consensus 197 ---~id~~al~~La~~s~G~lr~al 218 (486)
T PRK14953 197 ---EYEEKALDLLAQASEGGMRDAA 218 (486)
T ss_pred ---CCCHHHHHHHHHHcCCCHHHHH
Confidence 1122445667888888665443
No 190
>PRK08116 hypothetical protein; Validated
Probab=40.27 E-value=45 Score=33.34 Aligned_cols=44 Identities=27% Similarity=0.420 Sum_probs=24.8
Q ss_pred HHcCCccEEEEEECCcCCCccchhh--hhhhhcCC-CCCcEEEEEcCc
Q 038430 41 RSIEGKKNFLILNDVWDGDYNKWAP--FFLCLNHG-LHGSKILVTTRN 85 (677)
Q Consensus 41 ~~L~~kr~LlVlDdvw~~~~~~~~~--l~~~~~~~-~~gS~IiiTTR~ 85 (677)
+.+.+-. ||||||+......+|.. +...+... .+|..+||||..
T Consensus 174 ~~l~~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 174 RSLVNAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred HHhcCCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 3344434 89999995443344544 33333321 346679999953
No 191
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=39.63 E-value=2.7e+02 Score=28.38 Aligned_cols=85 Identities=11% Similarity=0.182 Sum_probs=51.3
Q ss_pred hHHHHHHHHHHHcC--CccEEEEEECCcCCCccchhhhhhhhcCC--CCCcEEEEEcCchHHHHhcCC------------
Q 038430 31 EFQSLMSHIHRSIE--GKKNFLILNDVWDGDYNKWAPFFLCLNHG--LHGSKILVTTRNELVARMMGS------------ 94 (677)
Q Consensus 31 ~~~~~~~~i~~~L~--~kr~LlVlDdvw~~~~~~~~~l~~~~~~~--~~gS~IiiTTR~~~v~~~~~~------------ 94 (677)
+.++....+.+.+. ++|++||+||++..+...-..+....... .++..+|+..-.+.+......
T Consensus 155 ~~~~~~~~~~~~l~~~~~~iViiIDdLDR~~~~~i~~~l~~ik~~~~~~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~~ 234 (325)
T PF07693_consen 155 EVEELISKIKKKLKESKKRIVIIIDDLDRCSPEEIVELLEAIKLLLDFPNIIFILAFDPEILEKAIEKNYGEGFDEIDGR 234 (325)
T ss_pred HHHHHHHHHHHhhhcCCceEEEEEcchhcCCcHHHHHHHHHHHHhcCCCCeEEEEEecHHHHHHHHHhhcCcccccccHH
Confidence 44445666777665 58999999999887655444444433321 256666666655544443211
Q ss_pred -------CCeEecCCCChHHHHHHHHHH
Q 038430 95 -------TNIIFIEQLTEEECWSLFKRL 115 (677)
Q Consensus 95 -------~~~~~v~~L~~~ea~~LF~~~ 115 (677)
+..+.+++.+..+-...|...
T Consensus 235 ~yLeKiiq~~~~lP~~~~~~~~~~~~~~ 262 (325)
T PF07693_consen 235 EYLEKIIQVPFSLPPPSPSDLERYLNEL 262 (325)
T ss_pred HHHHhhcCeEEEeCCCCHHHHHHHHHHH
Confidence 236888888877655555444
No 192
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=39.18 E-value=22 Score=21.48 Aligned_cols=14 Identities=29% Similarity=0.342 Sum_probs=8.8
Q ss_pred CCcCEEEecCcccc
Q 038430 354 MHLKYLNLSELHIE 367 (677)
Q Consensus 354 ~~L~~L~Ls~~~i~ 367 (677)
++|++|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35666666666654
No 193
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=38.62 E-value=1.7e+02 Score=29.88 Aligned_cols=70 Identities=13% Similarity=0.113 Sum_probs=41.5
Q ss_pred CccEEEEEECCcCCC-ccchhhhhhhhcCCCCCcEEEEEcCchHHH-Hhc-CCCCeEecCCCChHHHHHHHHH
Q 038430 45 GKKNFLILNDVWDGD-YNKWAPFFLCLNHGLHGSKILVTTRNELVA-RMM-GSTNIIFIEQLTEEECWSLFKR 114 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~-~~~~~~l~~~~~~~~~gS~IiiTTR~~~v~-~~~-~~~~~~~v~~L~~~ea~~LF~~ 114 (677)
+.+-+||+||+.... ......+...+.....+.++|+||...... ... .....+.++..+.++..+++..
T Consensus 99 ~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 99 GGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred CCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEEEeCCCCHHHHHHHHHH
Confidence 345578899997652 223334555555555677899998654311 111 1123677777788877766554
No 194
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=37.37 E-value=2.5e+02 Score=31.56 Aligned_cols=98 Identities=14% Similarity=0.065 Sum_probs=60.9
Q ss_pred CccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEE-EcCchHHHHhcC-CCCeEecCCCChHHHHHHHHHHhhcCCCC
Q 038430 45 GKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILV-TTRNELVARMMG-STNIIFIEQLTEEECWSLFKRLAFFGCSF 122 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~Iii-TTR~~~v~~~~~-~~~~~~v~~L~~~ea~~LF~~~af~~~~~ 122 (677)
+++-++|+|++.......+..+...+..-.....+|+ ||....+..... -...++..+++.++..+.+.+.+-....
T Consensus 118 ~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi- 196 (559)
T PRK05563 118 AKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGI- 196 (559)
T ss_pred CCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCC-
Confidence 4556789999987665667777777766544445554 444444433321 2447889999999888888776532221
Q ss_pred CCCcchhHHHHHHHHHhcCCchHH
Q 038430 123 EDCERLEPIGQKIARKCKGLPIAA 146 (677)
Q Consensus 123 ~~~~~~~~~~~~i~~~c~GlPLal 146 (677)
. --.+....+++.++|-+..+
T Consensus 197 ~---i~~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 197 E---YEDEALRLIARAAEGGMRDA 217 (559)
T ss_pred C---CCHHHHHHHHHHcCCCHHHH
Confidence 1 12344667788888766543
No 195
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=36.42 E-value=1.7e+02 Score=30.24 Aligned_cols=67 Identities=9% Similarity=0.129 Sum_probs=44.5
Q ss_pred EEEEEECCcCCCccchhhhhhhhcCCCCCcEEEEEcCch-HHHHhcCC-CCeEecCCCChHHHHHHHHH
Q 038430 48 NFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTTRNE-LVARMMGS-TNIIFIEQLTEEECWSLFKR 114 (677)
Q Consensus 48 ~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiTTR~~-~v~~~~~~-~~~~~v~~L~~~ea~~LF~~ 114 (677)
=.+|+|++...+......+...+.....+..+|++|.+. .+...+.. ...+.+.+++.+++.+.+..
T Consensus 115 kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 115 RVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred eEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHh
Confidence 344568887766566666777776554556677777664 44444322 55899999999998887755
No 196
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=35.26 E-value=3.1e+02 Score=27.00 Aligned_cols=73 Identities=14% Similarity=0.068 Sum_probs=52.8
Q ss_pred CccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEE-EcCchHHHHhcCC-CCeEecCCCChHHHHHHHHHHhh
Q 038430 45 GKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILV-TTRNELVARMMGS-TNIIFIEQLTEEECWSLFKRLAF 117 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~Iii-TTR~~~v~~~~~~-~~~~~v~~L~~~ea~~LF~~~af 117 (677)
+++=.+|+|++...+......+...+..-..++.+|+ |++-..+.....+ .+.+.++.....++.++....+.
T Consensus 88 g~~KViII~~ae~mt~~AANALLKtLEEPP~~t~fILit~~~~~LLpTIrSRCq~i~~~~p~~~~~~e~~~~~~~ 162 (263)
T PRK06581 88 SGYKVAIIYSAELMNLNAANSCLKILEDAPKNSYIFLITSRAASIISTIRSRCFKINVRSSILHAYNELYSQFIQ 162 (263)
T ss_pred CCcEEEEEechHHhCHHHHHHHHHhhcCCCCCeEEEEEeCChhhCchhHhhceEEEeCCCCCHHHHHHHHHHhcc
Confidence 5667889999988877788888888887766777665 4444566665433 45777888888878777776553
No 197
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=35.26 E-value=1e+02 Score=28.47 Aligned_cols=53 Identities=11% Similarity=0.152 Sum_probs=36.3
Q ss_pred HHHHHHHHHcCCccE-EEEEECCcC---CCccchhhhhhhhcCCCCCcEEEEEcCch
Q 038430 34 SLMSHIHRSIEGKKN-FLILNDVWD---GDYNKWAPFFLCLNHGLHGSKILVTTRNE 86 (677)
Q Consensus 34 ~~~~~i~~~L~~kr~-LlVlDdvw~---~~~~~~~~l~~~~~~~~~gS~IiiTTR~~ 86 (677)
+.-+..++.+...+| |||||.+-. ......+.+...+.....+.-||+|=|+.
T Consensus 84 ~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 84 AAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 344555666666665 999999921 12245566777777666677899999976
No 198
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=34.03 E-value=1.1e+02 Score=28.78 Aligned_cols=52 Identities=13% Similarity=0.160 Sum_probs=36.4
Q ss_pred HHHHHHHHcCCccE-EEEEECCcC---CCccchhhhhhhhcCCCCCcEEEEEcCch
Q 038430 35 LMSHIHRSIEGKKN-FLILNDVWD---GDYNKWAPFFLCLNHGLHGSKILVTTRNE 86 (677)
Q Consensus 35 ~~~~i~~~L~~kr~-LlVlDdvw~---~~~~~~~~l~~~~~~~~~gS~IiiTTR~~ 86 (677)
.-+..++.+...+| |||||.+-. ......+.+...+.....+.-||+|=|+.
T Consensus 103 ~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 103 GWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 44555666666555 999999922 22245677777887766778999999976
No 199
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=33.65 E-value=1.6e+02 Score=29.70 Aligned_cols=70 Identities=4% Similarity=0.086 Sum_probs=43.4
Q ss_pred cEEEEEECCcCC---------CccchhhhhhhhcCCCCCcEEEEEcCchHHHHhcC--------CCCeEecCCCChHHHH
Q 038430 47 KNFLILNDVWDG---------DYNKWAPFFLCLNHGLHGSKILVTTRNELVARMMG--------STNIIFIEQLTEEECW 109 (677)
Q Consensus 47 r~LlVlDdvw~~---------~~~~~~~l~~~~~~~~~gS~IiiTTR~~~v~~~~~--------~~~~~~v~~L~~~ea~ 109 (677)
.-+|++|++... .......+...+.....+-+||.++-......... ....+++++++.+|-.
T Consensus 122 ~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~ 201 (284)
T TIGR02880 122 GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELL 201 (284)
T ss_pred CcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHH
Confidence 358889999632 01223445556655555567777765433222111 1347999999999999
Q ss_pred HHHHHHh
Q 038430 110 SLFKRLA 116 (677)
Q Consensus 110 ~LF~~~a 116 (677)
+++...+
T Consensus 202 ~I~~~~l 208 (284)
T TIGR02880 202 VIAGLML 208 (284)
T ss_pred HHHHHHH
Confidence 9988865
No 200
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=32.93 E-value=3e+02 Score=27.82 Aligned_cols=68 Identities=19% Similarity=0.225 Sum_probs=47.1
Q ss_pred CccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEEEcCc-hHHHHhcCC-CCeEecCCCChHHHHHHHH
Q 038430 45 GKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTTRN-ELVARMMGS-TNIIFIEQLTEEECWSLFK 113 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiTTR~-~~v~~~~~~-~~~~~v~~L~~~ea~~LF~ 113 (677)
+++=.+|+||+...+...+..+...+..-..+..+|++|.+ ..+..+.-+ .+.+.+.. +.++..+.+.
T Consensus 103 ~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 103 GKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLE 172 (290)
T ss_pred CCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHH
Confidence 45668899999988878888899999876666767776654 456665433 45677766 5555555544
No 201
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=32.17 E-value=1.2e+02 Score=28.16 Aligned_cols=52 Identities=8% Similarity=0.057 Sum_probs=36.4
Q ss_pred HHHHHHHHcCCccE-EEEEECCcC---CCccchhhhhhhhcCCCCCcEEEEEcCch
Q 038430 35 LMSHIHRSIEGKKN-FLILNDVWD---GDYNKWAPFFLCLNHGLHGSKILVTTRNE 86 (677)
Q Consensus 35 ~~~~i~~~L~~kr~-LlVlDdvw~---~~~~~~~~l~~~~~~~~~gS~IiiTTR~~ 86 (677)
.-+..++.+....| |||||.+-. ...-..+.+...+.....+.-||+|=|+.
T Consensus 103 ~~~~a~~~l~~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~ 158 (178)
T PRK07414 103 LWQYTQAVVDEGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEM 158 (178)
T ss_pred HHHHHHHHHhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCC
Confidence 34555666665555 999999922 22356667777787777788899999975
No 202
>PRK04195 replication factor C large subunit; Provisional
Probab=30.77 E-value=7.5e+02 Score=27.10 Aligned_cols=97 Identities=13% Similarity=0.110 Sum_probs=58.6
Q ss_pred ccEEEEEECCcCCCc----cchhhhhhhhcCCCCCcEEEEEcCch-HHHH-hc-CCCCeEecCCCChHHHHHHHHHHhhc
Q 038430 46 KKNFLILNDVWDGDY----NKWAPFFLCLNHGLHGSKILVTTRNE-LVAR-MM-GSTNIIFIEQLTEEECWSLFKRLAFF 118 (677)
Q Consensus 46 kr~LlVlDdvw~~~~----~~~~~l~~~~~~~~~gS~IiiTTR~~-~v~~-~~-~~~~~~~v~~L~~~ea~~LF~~~af~ 118 (677)
++-+||+|+++.... .....+...+... +..||+|+.+. .+.. .. .....+++++++.++....+...+..
T Consensus 98 ~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~--~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~ 175 (482)
T PRK04195 98 RRKLILLDEVDGIHGNEDRGGARAILELIKKA--KQPIILTANDPYDPSLRELRNACLMIEFKRLSTRSIVPVLKRICRK 175 (482)
T ss_pred CCeEEEEecCcccccccchhHHHHHHHHHHcC--CCCEEEeccCccccchhhHhccceEEEecCCCHHHHHHHHHHHHHH
Confidence 677999999976432 2345555555532 33466666432 1111 11 22457899999999988888776643
Q ss_pred CCCCCCCcchhHHHHHHHHHhcCCchHHHH
Q 038430 119 GCSFEDCERLEPIGQKIARKCKGLPIAAKV 148 (677)
Q Consensus 119 ~~~~~~~~~~~~~~~~i~~~c~GlPLal~~ 148 (677)
... . --.+....|++.++|-.-++..
T Consensus 176 egi-~---i~~eaL~~Ia~~s~GDlR~ain 201 (482)
T PRK04195 176 EGI-E---CDDEALKEIAERSGGDLRSAIN 201 (482)
T ss_pred cCC-C---CCHHHHHHHHHHcCCCHHHHHH
Confidence 322 1 1235677888889886655543
No 203
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=30.70 E-value=51 Score=34.84 Aligned_cols=56 Identities=14% Similarity=0.154 Sum_probs=33.7
Q ss_pred CeEEecCC--CCHHHHHHHHHHHhcCCCCCCc-----hH-HHHHHHHHHH-cCCccEEEEEECCc
Q 038430 1 MWVCVSDT--FEEISVANAIIEGLGESTSSLS-----EF-QSLMSHIHRS-IEGKKNFLILNDVW 56 (677)
Q Consensus 1 ~WV~vs~~--~~~~~i~~~i~~~l~~~~~~~~-----~~-~~~~~~i~~~-L~~kr~LlVlDdvw 56 (677)
+||.++.. .++.+++++|+..+-.++.+.. .. .......... -.+++++|++|.+-
T Consensus 201 v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~Ae~~~~~GkdVVLlIDEit 265 (415)
T TIGR00767 201 LIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSIT 265 (415)
T ss_pred EEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHHHHHHHHcCCCeEEEEEChh
Confidence 48899866 7999999999544333322211 11 1112222222 24899999999993
No 204
>CHL00181 cbbX CbbX; Provisional
Probab=30.64 E-value=2.7e+02 Score=28.09 Aligned_cols=70 Identities=9% Similarity=0.105 Sum_probs=43.4
Q ss_pred EEEEEECCcCC---------CccchhhhhhhhcCCCCCcEEEEEcCchHHHHhcC--------CCCeEecCCCChHHHHH
Q 038430 48 NFLILNDVWDG---------DYNKWAPFFLCLNHGLHGSKILVTTRNELVARMMG--------STNIIFIEQLTEEECWS 110 (677)
Q Consensus 48 ~LlVlDdvw~~---------~~~~~~~l~~~~~~~~~gS~IiiTTR~~~v~~~~~--------~~~~~~v~~L~~~ea~~ 110 (677)
-.|++|++... ....-..+...+.....+.+||.++....+..... ....++.++++.+|-.+
T Consensus 124 gVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~ 203 (287)
T CHL00181 124 GVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQ 203 (287)
T ss_pred CEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHH
Confidence 48899999642 01122334445555545567777776444322111 24479999999999999
Q ss_pred HHHHHhh
Q 038430 111 LFKRLAF 117 (677)
Q Consensus 111 LF~~~af 117 (677)
++...+-
T Consensus 204 I~~~~l~ 210 (287)
T CHL00181 204 IAKIMLE 210 (287)
T ss_pred HHHHHHH
Confidence 9888763
No 205
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=30.35 E-value=1e+02 Score=28.45 Aligned_cols=55 Identities=15% Similarity=0.173 Sum_probs=33.6
Q ss_pred HHHHHHHHHHcCCccE-EEEEECCc---CCCccchhhhhhhhcCCCCCcEEEEEcCchH
Q 038430 33 QSLMSHIHRSIEGKKN-FLILNDVW---DGDYNKWAPFFLCLNHGLHGSKILVTTRNEL 87 (677)
Q Consensus 33 ~~~~~~i~~~L~~kr~-LlVlDdvw---~~~~~~~~~l~~~~~~~~~gS~IiiTTR~~~ 87 (677)
++.-+..++.+...+| |||||.|- +...-..+.+...+.......-||+|=|+..
T Consensus 82 ~~~~~~a~~~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~ 140 (172)
T PF02572_consen 82 REGLEEAKEAISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAP 140 (172)
T ss_dssp HHHHHHHHHHTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--
T ss_pred HHHHHHHHHHHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCC
Confidence 3445666677776666 99999992 2223566777778877777889999999774
No 206
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=29.07 E-value=3e+02 Score=23.20 Aligned_cols=74 Identities=12% Similarity=0.099 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhcCCCC----------CCc-hHHHHHHHHHHHcCCc-cEEEEEECCcCCCccc-----------hhhhhh
Q 038430 12 ISVANAIIEGLGESTS----------SLS-EFQSLMSHIHRSIEGK-KNFLILNDVWDGDYNK-----------WAPFFL 68 (677)
Q Consensus 12 ~~i~~~i~~~l~~~~~----------~~~-~~~~~~~~i~~~L~~k-r~LlVlDdvw~~~~~~-----------~~~l~~ 68 (677)
..+.+.+++.++.... ... ....+...+.+.-+.. +.+|++||++...... ...+..
T Consensus 12 T~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~ 91 (132)
T PF00004_consen 12 TTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLS 91 (132)
T ss_dssp HHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHH
T ss_pred eHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhcccccccccccccccccceeee
Confidence 4566777777754221 112 2222333333322233 7999999997653333 344555
Q ss_pred hhcCCC---CCcEEEEEcCc
Q 038430 69 CLNHGL---HGSKILVTTRN 85 (677)
Q Consensus 69 ~~~~~~---~gS~IiiTTR~ 85 (677)
.+.... ++-.||.||..
T Consensus 92 ~l~~~~~~~~~~~vI~ttn~ 111 (132)
T PF00004_consen 92 LLDNPSSKNSRVIVIATTNS 111 (132)
T ss_dssp HHHTTTTTSSSEEEEEEESS
T ss_pred cccccccccccceeEEeeCC
Confidence 554432 23567777765
No 207
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=28.56 E-value=5e+02 Score=28.13 Aligned_cols=107 Identities=9% Similarity=0.125 Sum_probs=59.0
Q ss_pred CHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHcCCc--cEEEEEECCcCCCccchhhhhhhhcCC-CCCcEEEEEcC--
Q 038430 10 EEISVANAIIEGLGESTSSLSEFQSLMSHIHRSIEGK--KNFLILNDVWDGDYNKWAPFFLCLNHG-LHGSKILVTTR-- 84 (677)
Q Consensus 10 ~~~~i~~~i~~~l~~~~~~~~~~~~~~~~i~~~L~~k--r~LlVlDdvw~~~~~~~~~l~~~~~~~-~~gS~IiiTTR-- 84 (677)
....+++.|...+...........+..+.+.+..++. -+++|+|..+.-.-..-+.+...+.+- -++||+|+.=-
T Consensus 218 ~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiAN 297 (529)
T KOG2227|consen 218 EASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIAN 297 (529)
T ss_pred chHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehh
Confidence 4566777777666211111111255566666666654 488999998653222333344444433 25666654321
Q ss_pred ----chHHHHhcC-----CCCeEecCCCChHHHHHHHHHHh
Q 038430 85 ----NELVARMMG-----STNIIFIEQLTEEECWSLFKRLA 116 (677)
Q Consensus 85 ----~~~v~~~~~-----~~~~~~v~~L~~~ea~~LF~~~a 116 (677)
..+.+.+.. ......-++-+.++-.++|..+.
T Consensus 298 slDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl 338 (529)
T KOG2227|consen 298 SLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRL 338 (529)
T ss_pred hhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHH
Confidence 111111111 13467778889999999998876
No 208
>PF06144 DNA_pol3_delta: DNA polymerase III, delta subunit; InterPro: IPR010372 DNA polymerase III, delta subunit (2.7.7.7 from EC) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction []. The delta subunit is also known as HolA.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3GLG_F 1XXH_A 1JQL_B 3GLF_F 1JQJ_C 3GLI_F.
Probab=25.98 E-value=3.8e+02 Score=24.09 Aligned_cols=137 Identities=10% Similarity=0.040 Sum_probs=64.2
Q ss_pred cCCCCHHHHHHHHHHHhcCCCCC------CchHHHHHHHHHHHcC-----CccEEEEEECC----cCCCccchhhhhhhh
Q 038430 6 SDTFEEISVANAIIEGLGESTSS------LSEFQSLMSHIHRSIE-----GKKNFLILNDV----WDGDYNKWAPFFLCL 70 (677)
Q Consensus 6 s~~~~~~~i~~~i~~~l~~~~~~------~~~~~~~~~~i~~~L~-----~kr~LlVlDdv----w~~~~~~~~~l~~~~ 70 (677)
++.+-+.+..+.|.+.+...... ....+.....+...+. +.+-+||+.+. .......+..+...+
T Consensus 6 ~d~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~slF~~~klvii~~~~~l~~~~~~~~~~~l~~~l 85 (172)
T PF06144_consen 6 EDSFLIEEYIKKIRKALIKKDFDDFNVIVFDGSEDDIDELLEELQSPSLFGDKKLVIIKNAPFLKDKLKKKEIKALIEYL 85 (172)
T ss_dssp S-HHHHHHHHHHHHHHHHTTTEEEEEEEE-STTS-HHH-HTTTSTTTTSSSSEEEEEEE-----TT-S-TTHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHhhcCCCccceEEEEccccCcHHHHHHHHhcCCccCCCeEEEEecCccccccccHHHHHHHHHHH
Confidence 44455667777777774333210 1111111111334333 45666777776 323347888898888
Q ss_pred cCCCCCcEEEEEcC-chH----HHHhcCC-CCeEecCCCChHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHhcCCch
Q 038430 71 NHGLHGSKILVTTR-NEL----VARMMGS-TNIIFIEQLTEEECWSLFKRLAFFGCSFEDCERLEPIGQKIARKCKGLPI 144 (677)
Q Consensus 71 ~~~~~gS~IiiTTR-~~~----v~~~~~~-~~~~~v~~L~~~ea~~LF~~~af~~~~~~~~~~~~~~~~~i~~~c~GlPL 144 (677)
.....++.+|+.+. ... ....... ..+++..++...+........+-..+. .--.+.+..++...+|-+.
T Consensus 86 ~~~~~~~~lii~~~~~~~~~~k~~k~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~----~i~~~a~~~L~~~~~~d~~ 161 (172)
T PF06144_consen 86 SNPPPDCILIIFSEEKLDKRKKLYKALKKQAIVIECKKPKEQELPRWIKERAKKNGL----KIDPDAAQYLIERVGNDLS 161 (172)
T ss_dssp TT--SSEEEEEEES-S--HHHHHHHHHTTTEEEEEE----TTTHHHHHHHHHHHTT-----EE-HHHHHHHHHHHTT-HH
T ss_pred hCCCCCEEEEEEeCCchhhhhhHHHHHhcccceEEecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHhChHHH
Confidence 88777888888887 222 2222222 235666677777766666665532222 1223345556666666555
Q ss_pred HH
Q 038430 145 AA 146 (677)
Q Consensus 145 al 146 (677)
++
T Consensus 162 ~l 163 (172)
T PF06144_consen 162 LL 163 (172)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 209
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=25.50 E-value=3.4e+02 Score=28.75 Aligned_cols=74 Identities=12% Similarity=0.005 Sum_probs=44.0
Q ss_pred CccEEEEEECCcCCC-----------ccchhhhhhhh---cCC--CCCcEEEEEcCchHHHHhc-----CCCCeEecCCC
Q 038430 45 GKKNFLILNDVWDGD-----------YNKWAPFFLCL---NHG--LHGSKILVTTRNELVARMM-----GSTNIIFIEQL 103 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~-----------~~~~~~l~~~~---~~~--~~gS~IiiTTR~~~v~~~~-----~~~~~~~v~~L 103 (677)
....+|++||++... ......+...+ ... ..+-+||.||......... ..+..++++..
T Consensus 223 ~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P 302 (389)
T PRK03992 223 KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLP 302 (389)
T ss_pred cCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCC
Confidence 456889999996421 01111222222 111 2345677777654433321 12457999999
Q ss_pred ChHHHHHHHHHHhhc
Q 038430 104 TEEECWSLFKRLAFF 118 (677)
Q Consensus 104 ~~~ea~~LF~~~af~ 118 (677)
+.++-.++|..++.+
T Consensus 303 ~~~~R~~Il~~~~~~ 317 (389)
T PRK03992 303 DEEGRLEILKIHTRK 317 (389)
T ss_pred CHHHHHHHHHHHhcc
Confidence 999999999987643
No 210
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=24.85 E-value=22 Score=38.58 Aligned_cols=81 Identities=19% Similarity=0.260 Sum_probs=49.9
Q ss_pred hccCCCeEEEeCCCCCCcCC---CCC-Ccc-cceeeccccc-cceEeCCccccCCCCCCCCCCCCCCCcccCCCccceee
Q 038430 576 SLTNLSDLKLVFCENCEQLP---PLG-KLP-LEKLELCHLK-SVKRVGNEFLEIEESEDDPSSSSSSSSVTAFPKVKSLE 649 (677)
Q Consensus 576 ~l~~L~~L~l~~c~~~~~l~---~l~-~l~-L~~L~l~~~~-~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 649 (677)
+.+.+..+.|++| ++..+. .+. .-| |+.|+|++.. .+..- .+. . -.....|++|.
T Consensus 216 n~p~i~sl~lsnN-rL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~-~el-~----------------K~k~l~Leel~ 276 (585)
T KOG3763|consen 216 NFPEILSLSLSNN-RLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE-SEL-D----------------KLKGLPLEELV 276 (585)
T ss_pred CCcceeeeecccc-hhhchhhhhHHHHhcchhheeecccchhhhcch-hhh-h----------------hhcCCCHHHee
Confidence 7788999999988 444443 333 347 9999999831 11111 111 0 14567789999
Q ss_pred eccccc-CccccccCCcc----ccCCCccccc
Q 038430 650 IKELEE-GNYRITRKENI----SIIPRLSSLR 676 (677)
Q Consensus 650 l~~~~~-~~~~~~~~~~~----~~~p~L~~L~ 676 (677)
+.++|- +...... +.+ ..||.|..|+
T Consensus 277 l~GNPlc~tf~~~s-~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 277 LEGNPLCTTFSDRS-EYVSAIRELFPKLLRLD 307 (585)
T ss_pred ecCCccccchhhhH-HHHHHHHHhcchheeec
Confidence 999888 6544321 222 2688888775
No 211
>TIGR01128 holA DNA polymerase III, delta subunit. subunit around DNA forming a DNA sliding clamp.
Probab=23.74 E-value=5.8e+02 Score=25.51 Aligned_cols=113 Identities=10% Similarity=0.002 Sum_probs=65.5
Q ss_pred hHHHHHHHHHHH-cCCccEEEEEECCcCCC-ccchhhhhhhhcCCCCCcEEEEEcCch-------HHHHhcCCCCeEecC
Q 038430 31 EFQSLMSHIHRS-IEGKKNFLILNDVWDGD-YNKWAPFFLCLNHGLHGSKILVTTRNE-------LVARMMGSTNIIFIE 101 (677)
Q Consensus 31 ~~~~~~~~i~~~-L~~kr~LlVlDdvw~~~-~~~~~~l~~~~~~~~~gS~IiiTTR~~-------~v~~~~~~~~~~~v~ 101 (677)
+.+++...+... +-+++-++|+++..... ...+..+...+.....+..+|+++-.. ...........++..
T Consensus 30 ~~~~l~~~~~~~slf~~~kliii~~~~~~~~~~~~~~L~~~l~~~~~~~~~i~~~~~~~~~~~~~k~~~~~~~~~~i~~~ 109 (302)
T TIGR01128 30 DWNQLLEEAQTLPLFSERRLVELRNPEGKPGAKGLKALEEYLANPPPDTLLLIEAPKLDKRKKLTKWLKALKNAQIVECK 109 (302)
T ss_pred CHHHHHHHhhccCcccCCeEEEEECCCCCCCHHHHHHHHHHHhcCCCCEEEEEecCCCCHhHHHHHHHHHhcCeeEEEec
Confidence 444444444433 44677789999996542 235777888887766666677766421 122221234467778
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHhcCCchHHH
Q 038430 102 QLTEEECWSLFKRLAFFGCSFEDCERLEPIGQKIARKCKGLPIAAK 147 (677)
Q Consensus 102 ~L~~~ea~~LF~~~af~~~~~~~~~~~~~~~~~i~~~c~GlPLal~ 147 (677)
.++..+-.......+-..+. . --.+.+..++..++|-..++.
T Consensus 110 ~~~~~~~~~~i~~~~~~~g~-~---i~~~a~~~l~~~~~~d~~~l~ 151 (302)
T TIGR01128 110 TPKEQELPRWIQARLKKLGL-R---IDPDAVQLLAELVEGNLLAIA 151 (302)
T ss_pred CCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHhCcHHHHHH
Confidence 88887777666665533222 1 223446667777777655443
No 212
>cd05141 Barstar_evA4336-like Barstar_evA4336-like contains uncharacterized sequences similar to the uncharacterized, predicted RNAase inhibitor evA4336 found in Azoarcus sp. EvN1. This is a subfamily of the Barstar family of RNAase inhibitors. Barstar is an intracellular inhibitor of barnase, an extracellular ribonuclease of Bacillus amyloliquefaciens. Barstar binds tightly to the barnase active site and sterically blocks it thus inhibiting its potentially lethal RNase activity inside the cell. Barstar also binds and inhibits a ribonuclease called RNase Sa (produced by Streptomyces aureofaciens) which belongs to the same enzyme family as does barnase.
Probab=23.37 E-value=3.3e+02 Score=21.32 Aligned_cols=68 Identities=15% Similarity=0.150 Sum_probs=48.3
Q ss_pred EEecCCCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHc--CCccEEEEEECCcC---CCccchhhhhhhh
Q 038430 3 VCVSDTFEEISVANAIIEGLGESTSSLSEFQSLMSHIHRSI--EGKKNFLILNDVWD---GDYNKWAPFFLCL 70 (677)
Q Consensus 3 V~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~i~~~L--~~kr~LlVlDdvw~---~~~~~~~~l~~~~ 70 (677)
|..++-.+...+++.+.+.++-+.--..+.+.+.+.+...- ..+++.+|+.+... .....+..+...+
T Consensus 3 idg~~i~~~~~~~~~l~~~l~fP~yfG~NlDAl~DcL~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~vl 75 (81)
T cd05141 3 LDLSGIADKAALLDALAAALDFPSWFGHNWDALADCLTDLSWWPAEGYVLVLRDGDALRAADPEDFATLLEIL 75 (81)
T ss_pred EecccCCCHHHHHHHHHHHcCCCccccCCHHHHHHHHcCcccCCCCCeEEEEeCcHHhhhcCHHHHHHHHHHH
Confidence 56677889999999999999766543468888888888773 56778888888742 2334555555444
No 213
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=22.99 E-value=2.3e+02 Score=26.51 Aligned_cols=52 Identities=13% Similarity=0.155 Sum_probs=36.9
Q ss_pred HHHHHHHHcCCccE-EEEEECCcC---CCccchhhhhhhhcCCCCCcEEEEEcCch
Q 038430 35 LMSHIHRSIEGKKN-FLILNDVWD---GDYNKWAPFFLCLNHGLHGSKILVTTRNE 86 (677)
Q Consensus 35 ~~~~i~~~L~~kr~-LlVlDdvw~---~~~~~~~~l~~~~~~~~~gS~IiiTTR~~ 86 (677)
.-...++.+.+.+| |+|||.+-- -....++.+...+.....-.-||+|=|..
T Consensus 110 ~w~~a~~~l~~~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~a 165 (198)
T COG2109 110 GWEHAKEALADGKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGA 165 (198)
T ss_pred HHHHHHHHHhCCCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCC
Confidence 34555566777666 999999921 12256777888887766678899999965
No 214
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=21.62 E-value=3.7e+02 Score=26.37 Aligned_cols=59 Identities=12% Similarity=0.167 Sum_probs=34.7
Q ss_pred chHHHHHHHHHHHcCCccEEEEEECCcC-CCccchhhhhhhhcCC---CCCcEEEE-EcCchHHHH
Q 038430 30 SEFQSLMSHIHRSIEGKKNFLILNDVWD-GDYNKWAPFFLCLNHG---LHGSKILV-TTRNELVAR 90 (677)
Q Consensus 30 ~~~~~~~~~i~~~L~~kr~LlVlDdvw~-~~~~~~~~l~~~~~~~---~~gS~Iii-TTR~~~v~~ 90 (677)
.+...+...++. +..||+|++||+-- ..+..+..++..+..+ .+.-.+|. ||--+|+..
T Consensus 92 ~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~ 155 (249)
T PF05673_consen 92 GDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVP 155 (249)
T ss_pred ccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccc
Confidence 344555555553 45799999999943 3345677788877654 23333444 443445444
No 215
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=21.53 E-value=8e+02 Score=24.31 Aligned_cols=139 Identities=18% Similarity=0.192 Sum_probs=80.0
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCchH----HHHHHHHHHHcC-Ccc-EEEEEECCcCCCccchhhhhhhhcCCCCCcE---
Q 038430 8 TFEEISVANAIIEGLGESTSSLSEF----QSLMSHIHRSIE-GKK-NFLILNDVWDGDYNKWAPFFLCLNHGLHGSK--- 78 (677)
Q Consensus 8 ~~~~~~i~~~i~~~l~~~~~~~~~~----~~~~~~i~~~L~-~kr-~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~--- 78 (677)
..+...+...|+..+... ..... ++..+.+.+..+ ++| +.+++|+..+.+....+.++....--..+|+
T Consensus 89 ~~s~~~~~~ai~~~l~~~--p~~~~~~~~e~~~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ 166 (269)
T COG3267 89 TLSDATLLEAIVADLESQ--PKVNVNAVLEQIDRELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLS 166 (269)
T ss_pred chhHHHHHHHHHHHhccC--ccchhHHHHHHHHHHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCcee
Confidence 557777888888888772 23333 344444445444 677 8999999977766666666554443222221
Q ss_pred EEEEcCch-------HHHHhcCC-CCe-EecCCCChHHHHHHHHHHhhcCCCCCCCcchh-HHHHHHHHHhcCCchHHHH
Q 038430 79 ILVTTRNE-------LVARMMGS-TNI-IFIEQLTEEECWSLFKRLAFFGCSFEDCERLE-PIGQKIARKCKGLPIAAKV 148 (677)
Q Consensus 79 IiiTTR~~-------~v~~~~~~-~~~-~~v~~L~~~ea~~LF~~~af~~~~~~~~~~~~-~~~~~i~~~c~GlPLal~~ 148 (677)
|+..-.-+ .+....+- ..+ |+++|++.++.-.....+.-+...+. +-+. +....|.....|.|.+|..
T Consensus 167 ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~--~l~~~~a~~~i~~~sqg~P~lin~ 244 (269)
T COG3267 167 IVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAETGLYLRHRLEGAGLPE--PLFSDDALLLIHEASQGIPRLINN 244 (269)
T ss_pred eeecCCcccchhhchHHHHhhhheEEEEEecCCcChHHHHHHHHHHHhccCCCc--ccCChhHHHHHHHHhccchHHHHH
Confidence 22221100 11111111 124 99999999988777777653332222 2222 3345677778999999976
Q ss_pred HH
Q 038430 149 IG 150 (677)
Q Consensus 149 ig 150 (677)
++
T Consensus 245 ~~ 246 (269)
T COG3267 245 LA 246 (269)
T ss_pred HH
Confidence 65
No 216
>KOG4354 consensus N-acetyl-gamma-glutamyl-phosphate reductase [Amino acid transport and metabolism]
Probab=20.02 E-value=1.2e+02 Score=29.27 Aligned_cols=87 Identities=11% Similarity=0.008 Sum_probs=47.8
Q ss_pred EecCCCCHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHcCCccEEEEEECCcCCCc--cchhhhhhhhcCCCCCcEEEE
Q 038430 4 CVSDTFEEISVANAIIEGLGESTSSLSEFQSLMSHIHRSIEGKKNFLILNDVWDGDY--NKWAPFFLCLNHGLHGSKILV 81 (677)
Q Consensus 4 ~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~i~~~L~~kr~LlVlDdvw~~~~--~~~~~l~~~~~~~~~gS~Iii 81 (677)
+|+-.+.+.+.++-|-..+....-.....+++.+..+..-.+.++.=|+|||=-..+ ..-......++....|-|.||
T Consensus 223 ~VaF~PHv~qwfqGi~lTi~vpmkksv~~~elr~lyk~~YedE~lvhV~ddvPlvkdv~gsh~v~~ggF~~~~~g~Ravi 302 (340)
T KOG4354|consen 223 TVAFTPHVMQWFQGIQLTIYVPMKKSVRTEELRQLYKTSYEDEELVHVLDDVPLVKDVRGSHYVHMGGFPDRIPGDRAVI 302 (340)
T ss_pred ceeechhHHHHhhhceEEEEEeecCcccHHHHHHHHHhhccCcceeeeeccccceeccCCcceeEeccccCCCCCceEEE
Confidence 344444444444333333322222334567777888888889999999999932110 112223446677777766666
Q ss_pred EcCchHHHH
Q 038430 82 TTRNELVAR 90 (677)
Q Consensus 82 TTR~~~v~~ 90 (677)
.+.-..+++
T Consensus 303 i~tIDNLlK 311 (340)
T KOG4354|consen 303 ISTIDNLLK 311 (340)
T ss_pred EEehhhhhh
Confidence 554444444
Done!