Query 038430
Match_columns 677
No_of_seqs 341 out of 3348
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 19:03:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038430.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038430hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 7.6E-35 2.6E-39 322.4 17.8 261 1-286 188-473 (549)
2 1vt4_I APAF-1 related killer D 99.9 2.9E-27 9.8E-32 265.1 13.8 230 1-277 185-436 (1221)
3 3sfz_A APAF-1, apoptotic pepti 99.9 1E-25 3.5E-30 275.4 18.4 252 1-284 183-452 (1249)
4 2id5_A Lingo-1, leucine rich r 99.9 8.3E-23 2.8E-27 223.2 19.5 292 300-677 29-327 (477)
5 4eco_A Uncharacterized protein 99.9 7.2E-23 2.5E-27 231.2 14.3 332 302-677 205-594 (636)
6 4fmz_A Internalin; leucine ric 99.9 4.5E-22 1.6E-26 207.9 19.0 274 302-677 65-340 (347)
7 1ogq_A PGIP-2, polygalacturona 99.9 3.5E-23 1.2E-27 212.8 9.8 248 303-613 50-304 (313)
8 4ecn_A Leucine-rich repeat pro 99.9 1.7E-22 5.8E-27 232.4 16.2 174 302-493 447-655 (876)
9 3rgz_A Protein brassinosteroid 99.9 2.8E-23 9.6E-28 239.9 8.1 272 302-611 268-549 (768)
10 3v47_A TOLL-like receptor 5B a 99.9 2.6E-22 8.9E-27 217.9 15.3 135 301-439 28-168 (455)
11 4fmz_A Internalin; leucine ric 99.9 5.7E-22 2E-26 207.1 17.2 275 302-677 43-318 (347)
12 1z6t_A APAF-1, apoptotic prote 99.9 4E-22 1.4E-26 223.7 16.0 246 1-280 183-448 (591)
13 4eco_A Uncharacterized protein 99.9 1.2E-22 4E-27 229.4 11.0 312 302-656 248-600 (636)
14 4fcg_A Uncharacterized protein 99.9 2.8E-21 9.6E-26 199.8 18.0 83 551-652 225-310 (328)
15 4fcg_A Uncharacterized protein 99.9 1.6E-21 5.4E-26 201.7 15.4 219 302-609 80-310 (328)
16 3rgz_A Protein brassinosteroid 99.9 2.1E-22 7.2E-27 232.6 9.8 92 551-661 628-723 (768)
17 3o6n_A APL1; leucine-rich repe 99.9 7.1E-22 2.4E-26 209.9 12.7 296 302-677 44-346 (390)
18 4ecn_A Leucine-rich repeat pro 99.9 8.4E-23 2.9E-27 234.9 5.1 179 302-492 322-605 (876)
19 3vq2_A TLR4, TOLL-like recepto 99.9 1.6E-21 5.5E-26 219.7 15.2 343 300-677 29-406 (606)
20 3t6q_A CD180 antigen; protein- 99.9 3.6E-21 1.2E-25 216.8 15.7 153 300-463 30-188 (606)
21 2id5_A Lingo-1, leucine rich r 99.9 7.2E-21 2.5E-25 207.8 17.5 282 307-677 15-303 (477)
22 1o6v_A Internalin A; bacterial 99.8 1.1E-20 3.9E-25 205.5 18.3 293 302-677 67-360 (466)
23 2z81_A CD282 antigen, TOLL-lik 99.8 1.1E-20 3.6E-25 210.4 16.9 178 301-493 24-207 (549)
24 2ft3_A Biglycan; proteoglycan, 99.8 2.3E-20 7.8E-25 193.7 18.1 288 304-677 34-327 (332)
25 1o6v_A Internalin A; bacterial 99.8 2.8E-20 9.5E-25 202.4 18.7 257 302-616 89-346 (466)
26 2z7x_B TOLL-like receptor 1, v 99.8 2E-20 6.8E-25 206.7 17.3 105 301-412 19-126 (520)
27 3oja_B Anopheles plasmodium-re 99.8 2.6E-21 8.9E-26 217.1 10.3 260 302-616 50-316 (597)
28 3bz5_A Internalin-J, INLJ; leu 99.8 4.3E-20 1.5E-24 199.5 19.1 161 302-492 41-201 (457)
29 1xku_A Decorin; proteoglycan, 99.8 1.7E-20 5.8E-25 194.5 15.0 289 304-677 32-326 (330)
30 3t6q_A CD180 antigen; protein- 99.8 1.4E-20 4.7E-25 212.1 14.5 244 304-610 255-510 (606)
31 2ft3_A Biglycan; proteoglycan, 99.8 9.3E-20 3.2E-24 189.0 18.5 264 301-654 52-331 (332)
32 3v47_A TOLL-like receptor 5B a 99.8 3.1E-20 1.1E-24 201.5 14.8 146 307-465 14-165 (455)
33 3o6n_A APL1; leucine-rich repe 99.8 1.6E-20 5.5E-25 199.4 11.9 263 302-655 68-351 (390)
34 3j0a_A TOLL-like receptor 5; m 99.8 3E-20 1E-24 216.9 14.5 321 301-655 22-374 (844)
35 3vq2_A TLR4, TOLL-like recepto 99.8 4.7E-20 1.6E-24 207.8 15.2 311 302-677 55-431 (606)
36 1ogq_A PGIP-2, polygalacturona 99.8 5.4E-21 1.9E-25 196.4 6.7 246 326-655 50-303 (313)
37 2z7x_B TOLL-like receptor 1, v 99.8 8.6E-20 2.9E-24 201.6 16.6 123 306-438 3-128 (520)
38 2z63_A TOLL-like receptor 4, v 99.8 2E-20 6.9E-25 209.1 11.6 153 300-463 25-186 (570)
39 2z81_A CD282 antigen, TOLL-lik 99.8 4.5E-20 1.5E-24 205.3 14.3 130 302-436 49-183 (549)
40 2z80_A TOLL-like receptor 2, v 99.8 8.2E-20 2.8E-24 191.2 15.0 250 300-611 49-312 (353)
41 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 1.2E-19 4E-24 202.4 17.2 126 301-437 50-181 (562)
42 1xku_A Decorin; proteoglycan, 99.8 7.2E-20 2.5E-24 189.7 14.2 266 301-653 50-329 (330)
43 3bz5_A Internalin-J, INLJ; leu 99.8 1.3E-19 4.3E-24 195.9 16.5 230 302-617 63-303 (457)
44 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 7E-20 2.4E-24 204.2 14.3 142 305-463 33-178 (562)
45 1ziw_A TOLL-like receptor 3; i 99.8 1.4E-19 4.9E-24 206.6 17.0 179 300-492 22-205 (680)
46 3oja_B Anopheles plasmodium-re 99.8 2.1E-19 7.1E-24 201.6 13.9 268 302-611 74-356 (597)
47 3j0a_A TOLL-like receptor 5; m 99.8 2.1E-18 7.3E-23 201.2 21.5 332 306-677 7-369 (844)
48 2z63_A TOLL-like receptor 4, v 99.8 3.4E-19 1.2E-23 199.1 11.8 131 302-438 51-190 (570)
49 1ziw_A TOLL-like receptor 3; i 99.8 1.1E-18 3.9E-23 199.2 15.8 35 640-677 581-616 (680)
50 2z66_A Variable lymphocyte rec 99.8 4.8E-19 1.6E-23 181.4 11.3 238 307-611 11-259 (306)
51 2z80_A TOLL-like receptor 2, v 99.8 6.7E-19 2.3E-23 184.2 11.7 263 308-655 36-313 (353)
52 2z66_A Variable lymphocyte rec 99.8 4.2E-19 1.4E-23 181.9 9.7 242 329-655 10-260 (306)
53 3zyi_A Leucine-rich repeat-con 99.8 6.4E-18 2.2E-22 183.0 17.7 235 306-609 57-299 (452)
54 3zyj_A Leucine-rich repeat-con 99.8 9.1E-18 3.1E-22 181.1 18.1 236 306-610 46-289 (440)
55 1ozn_A Reticulon 4 receptor; N 99.8 1.3E-18 4.3E-23 176.3 10.4 219 306-589 14-236 (285)
56 3zyi_A Leucine-rich repeat-con 99.7 2.8E-18 9.5E-23 185.8 11.4 224 300-589 72-301 (452)
57 4g8a_A TOLL-like receptor 4; l 99.7 5.8E-18 2E-22 191.6 13.8 133 299-437 48-185 (635)
58 3zyj_A Leucine-rich repeat-con 99.7 5.1E-18 1.8E-22 183.0 11.2 224 300-589 61-290 (440)
59 3g06_A SSPH2 (leucine-rich rep 99.7 6.9E-17 2.3E-21 179.8 19.6 237 301-655 59-296 (622)
60 1wwl_A Monocyte differentiatio 99.7 1.6E-19 5.5E-24 185.4 -2.0 243 305-609 45-305 (312)
61 3o53_A Protein LRIM1, AGAP0063 99.7 3.2E-19 1.1E-23 183.6 -0.1 240 322-655 30-274 (317)
62 1jl5_A Outer protein YOPM; leu 99.7 2.8E-18 9.4E-23 185.2 6.2 140 302-463 10-162 (454)
63 3oja_A Leucine-rich immune mol 99.7 1.4E-17 4.7E-22 181.5 9.3 210 327-611 35-248 (487)
64 1jl5_A Outer protein YOPM; leu 99.7 3.4E-16 1.2E-20 168.9 19.9 274 302-655 130-408 (454)
65 3o53_A Protein LRIM1, AGAP0063 99.7 8.3E-19 2.8E-23 180.5 -2.2 242 302-617 33-279 (317)
66 1wwl_A Monocyte differentiatio 99.7 3.5E-18 1.2E-22 175.4 2.5 250 322-655 39-308 (312)
67 1ozn_A Reticulon 4 receptor; N 99.7 4.5E-17 1.5E-21 164.9 9.7 177 300-492 29-211 (285)
68 3oja_A Leucine-rich immune mol 99.7 2.8E-18 9.5E-23 187.0 -0.8 235 302-610 33-272 (487)
69 4g8a_A TOLL-like receptor 4; l 99.7 1.5E-15 5E-20 171.8 19.5 140 311-463 39-182 (635)
70 2z62_A TOLL-like receptor 4, v 99.7 2.8E-16 9.6E-21 158.2 11.3 199 327-589 29-235 (276)
71 3g06_A SSPH2 (leucine-rich rep 99.7 1.6E-15 5.4E-20 168.9 18.0 251 303-677 40-291 (622)
72 1p9a_G Platelet glycoprotein I 99.6 1.1E-15 3.7E-20 154.8 14.3 195 303-589 10-206 (290)
73 1h6u_A Internalin H; cell adhe 99.6 4.1E-16 1.4E-20 159.5 10.9 124 322-463 37-160 (308)
74 1h6u_A Internalin H; cell adhe 99.6 2.4E-16 8.2E-21 161.2 7.8 125 302-438 40-164 (308)
75 4ay9_X Follicle-stimulating ho 99.6 1.3E-15 4.3E-20 159.0 13.0 77 554-652 176-255 (350)
76 1z7x_W Ribonuclease inhibitor; 99.6 5.7E-18 1.9E-22 184.0 -5.3 179 303-492 28-237 (461)
77 1z7x_W Ribonuclease inhibitor; 99.6 2.6E-18 9E-23 186.6 -8.3 333 302-677 2-377 (461)
78 2o6q_A Variable lymphocyte rec 99.6 4E-15 1.4E-19 149.2 15.0 123 305-436 18-144 (270)
79 2ast_B S-phase kinase-associat 99.6 6.9E-17 2.4E-21 167.6 1.8 124 305-435 49-178 (336)
80 2z62_A TOLL-like receptor 4, v 99.6 1.1E-15 3.6E-20 153.9 10.3 213 340-610 16-234 (276)
81 2ca6_A RAN GTPase-activating p 99.6 1E-17 3.4E-22 177.5 -5.4 187 304-492 33-254 (386)
82 2xwt_C Thyrotropin receptor; s 99.6 1E-15 3.5E-20 150.6 8.0 202 314-612 22-238 (239)
83 2o6q_A Variable lymphocyte rec 99.6 7.7E-15 2.6E-19 147.1 14.4 192 327-610 17-215 (270)
84 4glp_A Monocyte differentiatio 99.6 6.3E-15 2.2E-19 150.9 13.7 223 304-609 65-303 (310)
85 2xwt_C Thyrotropin receptor; s 99.6 4E-15 1.4E-19 146.3 11.5 198 301-589 29-237 (239)
86 1p9a_G Platelet glycoprotein I 99.6 2.4E-15 8.2E-20 152.3 9.3 131 300-438 28-161 (290)
87 2ast_B S-phase kinase-associat 99.6 3.8E-16 1.3E-20 162.0 3.3 225 327-610 48-282 (336)
88 3ogk_B Coronatine-insensitive 99.6 1.9E-16 6.5E-21 177.7 1.1 133 303-436 164-304 (592)
89 2ca6_A RAN GTPase-activating p 99.6 4.9E-16 1.7E-20 164.5 3.7 248 314-611 20-314 (386)
90 3rfs_A Internalin B, repeat mo 99.6 1.5E-15 5.3E-20 152.3 7.1 128 302-438 40-170 (272)
91 2p1m_B Transport inhibitor res 99.5 5.6E-16 1.9E-20 173.9 0.9 110 302-411 129-245 (594)
92 3rfs_A Internalin B, repeat mo 99.5 1.1E-14 3.8E-19 146.1 9.0 193 321-610 36-232 (272)
93 3ogk_B Coronatine-insensitive 99.5 1.9E-15 6.3E-20 169.6 2.1 180 303-492 138-328 (592)
94 4ay9_X Follicle-stimulating ho 99.5 1.9E-14 6.4E-19 150.0 9.5 234 307-609 13-255 (350)
95 4glp_A Monocyte differentiatio 99.5 2.9E-14 1E-18 145.9 9.8 81 552-655 221-306 (310)
96 1h6t_A Internalin B; cell adhe 99.5 5.4E-14 1.9E-18 142.4 10.8 169 322-588 42-210 (291)
97 3goz_A Leucine-rich repeat-con 99.5 4.3E-15 1.5E-19 155.7 2.5 249 308-609 3-293 (362)
98 1m9s_A Internalin B; cell inva 99.4 2.7E-13 9.2E-18 150.7 12.4 170 322-589 39-208 (605)
99 3m19_A Variable lymphocyte rec 99.4 2.6E-13 8.9E-18 134.3 11.0 169 306-492 17-189 (251)
100 4ezg_A Putative uncharacterize 99.4 3.3E-13 1.1E-17 128.1 10.2 81 351-434 41-121 (197)
101 3m19_A Variable lymphocyte rec 99.4 4.7E-13 1.6E-17 132.4 11.5 104 326-438 14-120 (251)
102 1h6t_A Internalin B; cell adhe 99.4 5.8E-13 2E-17 134.8 12.0 166 302-492 45-210 (291)
103 3cvr_A Invasion plasmid antige 99.4 1.8E-13 6.2E-18 150.4 8.7 187 304-595 60-247 (571)
104 3goz_A Leucine-rich repeat-con 99.4 2E-14 6.7E-19 150.7 0.2 238 300-589 19-295 (362)
105 4ezg_A Putative uncharacterize 99.4 6.5E-13 2.2E-17 126.1 10.1 129 302-438 43-172 (197)
106 1m9s_A Internalin B; cell inva 99.4 1.5E-13 5.2E-18 152.7 5.4 166 302-492 42-207 (605)
107 3cvr_A Invasion plasmid antige 99.4 2.9E-12 1E-16 140.8 15.0 174 326-611 59-241 (571)
108 2ell_A Acidic leucine-rich nuc 99.4 2E-12 6.9E-17 119.3 10.3 130 302-439 23-161 (168)
109 1xeu_A Internalin C; cellular 99.4 2E-12 7E-17 128.6 10.8 59 350-411 37-95 (263)
110 1xeu_A Internalin C; cellular 99.3 9.5E-13 3.2E-17 131.1 7.8 161 307-493 23-183 (263)
111 4b8c_D Glucose-repressible alc 99.3 4.7E-13 1.6E-17 152.6 4.5 153 303-463 173-325 (727)
112 2v9t_B SLIT homolog 2 protein 99.3 7.9E-12 2.7E-16 120.8 11.8 86 350-436 52-139 (220)
113 2p1m_B Transport inhibitor res 99.3 1.5E-13 5.3E-18 154.0 -0.4 134 352-492 103-245 (594)
114 1dce_A Protein (RAB geranylger 99.3 9.1E-15 3.1E-19 161.6 -10.3 108 551-677 459-567 (567)
115 2v9t_B SLIT homolog 2 protein 99.3 6.6E-12 2.3E-16 121.3 10.9 131 301-438 30-165 (220)
116 3e6j_A Variable lymphocyte rec 99.3 9.3E-12 3.2E-16 121.1 12.0 121 308-437 24-147 (229)
117 2je0_A Acidic leucine-rich nuc 99.3 2E-12 7E-17 116.6 6.7 124 302-433 16-148 (149)
118 3e6j_A Variable lymphocyte rec 99.3 9.7E-12 3.3E-16 121.0 11.3 131 300-437 37-171 (229)
119 2o6s_A Variable lymphocyte rec 99.3 2.7E-12 9.4E-17 122.9 7.0 121 307-436 11-135 (208)
120 2v70_A SLIT-2, SLIT homolog 2 99.3 1.4E-11 4.6E-16 119.1 11.6 124 307-438 15-142 (220)
121 2v70_A SLIT-2, SLIT homolog 2 99.3 1.3E-11 4.4E-16 119.3 10.7 133 300-438 29-166 (220)
122 2o6s_A Variable lymphocyte rec 99.3 9.7E-12 3.3E-16 119.1 9.1 131 300-437 25-160 (208)
123 4b8c_D Glucose-repressible alc 99.2 6E-12 2.1E-16 143.4 7.5 119 313-438 211-329 (727)
124 1a9n_A U2A', U2A'; complex (nu 99.2 1.2E-11 4E-16 115.1 8.2 127 302-436 18-151 (176)
125 1w8a_A SLIT protein; signaling 99.2 3.4E-11 1.2E-15 113.6 9.5 125 306-438 11-139 (192)
126 2xot_A Amphoterin-induced prot 99.2 3.3E-11 1.1E-15 125.9 9.8 124 307-438 22-149 (361)
127 2xot_A Amphoterin-induced prot 99.2 4.4E-11 1.5E-15 124.9 10.4 132 300-438 36-176 (361)
128 2ell_A Acidic leucine-rich nuc 99.2 4.2E-11 1.4E-15 110.3 7.6 107 324-438 22-133 (168)
129 2je0_A Acidic leucine-rich nuc 99.1 3E-11 1E-15 108.9 6.1 128 325-462 16-148 (149)
130 2wfh_A SLIT homolog 2 protein 99.1 1.2E-10 4.1E-15 109.9 10.3 122 307-437 14-138 (193)
131 1dce_A Protein (RAB geranylger 99.1 6.6E-11 2.2E-15 130.7 8.9 99 305-411 443-543 (567)
132 1a9n_A U2A', U2A'; complex (nu 99.1 1.1E-10 3.9E-15 108.3 7.0 132 321-463 14-149 (176)
133 3sb4_A Hypothetical leucine ri 99.1 8.2E-10 2.8E-14 113.7 13.4 264 325-676 48-327 (329)
134 1w8a_A SLIT protein; signaling 99.1 5E-10 1.7E-14 105.5 10.5 123 329-463 11-135 (192)
135 1ds9_A Outer arm dynein; leuci 99.1 1.4E-12 4.8E-17 123.9 -7.5 137 344-488 38-180 (198)
136 2wfh_A SLIT homolog 2 protein 99.0 9.7E-10 3.3E-14 103.6 11.5 121 329-463 13-135 (193)
137 2o6r_A Variable lymphocyte rec 99.0 2.4E-09 8.3E-14 99.3 11.6 124 306-438 10-137 (177)
138 1ds9_A Outer arm dynein; leuci 99.0 6.2E-12 2.1E-16 119.4 -7.2 148 304-460 24-180 (198)
139 2r9u_A Variable lymphocyte rec 98.9 2.7E-09 9.2E-14 98.7 10.4 99 306-412 15-116 (174)
140 2o6r_A Variable lymphocyte rec 98.9 5.4E-09 1.9E-13 96.9 10.1 108 301-414 26-137 (177)
141 3g39_A Variable lymphocyte rec 98.9 6.2E-09 2.1E-13 95.8 9.6 97 307-411 13-112 (170)
142 2r9u_A Variable lymphocyte rec 98.9 6.2E-09 2.1E-13 96.2 9.4 102 328-438 14-118 (174)
143 3sb4_A Hypothetical leucine ri 98.8 8.2E-09 2.8E-13 106.2 9.8 260 302-650 48-328 (329)
144 3g39_A Variable lymphocyte rec 98.8 1.3E-08 4.3E-13 93.7 9.6 103 327-438 10-115 (170)
145 2ifg_A High affinity nerve gro 98.6 9.6E-08 3.3E-12 98.9 8.3 99 308-412 13-114 (347)
146 2ifg_A High affinity nerve gro 98.5 2E-07 6.8E-12 96.5 9.9 103 330-439 12-117 (347)
147 4fdw_A Leucine rich hypothetic 98.5 1.4E-06 4.7E-11 91.7 14.9 102 320-433 130-234 (401)
148 4fdw_A Leucine rich hypothetic 98.3 1.7E-06 5.8E-11 91.0 10.8 234 304-609 136-379 (401)
149 1w5s_A Origin recognition comp 98.2 2.9E-05 9.8E-10 82.2 18.4 235 2-257 91-372 (412)
150 3un9_A NLR family member X1; l 98.2 1.2E-07 4.2E-12 98.8 -0.8 35 354-388 101-137 (372)
151 3un9_A NLR family member X1; l 98.2 8E-08 2.7E-12 100.2 -3.9 132 302-438 71-224 (372)
152 2ra8_A Uncharacterized protein 98.0 3.2E-06 1.1E-10 87.4 5.0 83 326-411 107-203 (362)
153 2ra8_A Uncharacterized protein 97.9 2.8E-06 9.6E-11 87.8 2.2 167 321-492 134-317 (362)
154 4fs7_A Uncharacterized protein 97.9 0.00019 6.3E-09 75.4 16.1 293 303-675 71-393 (394)
155 3e4g_A ATP synthase subunit S, 97.9 1.5E-06 5E-11 79.0 -0.7 101 555-673 61-170 (176)
156 4fs7_A Uncharacterized protein 97.7 0.00025 8.6E-09 74.4 13.2 103 320-433 65-193 (394)
157 2qen_A Walker-type ATPase; unk 97.7 0.00014 4.8E-09 74.8 10.8 216 30-277 111-348 (350)
158 3e4g_A ATP synthase subunit S, 97.7 1.3E-05 4.5E-10 72.8 2.1 99 345-471 52-156 (176)
159 1io0_A Tropomodulin; LRR prote 97.6 7.3E-06 2.5E-10 76.2 0.0 90 321-411 31-133 (185)
160 2fna_A Conserved hypothetical 97.6 0.00028 9.4E-09 72.7 11.2 212 31-276 123-355 (357)
161 1io0_A Tropomodulin; LRR prote 97.5 1.1E-05 3.7E-10 75.0 -0.7 110 302-412 35-162 (185)
162 2v1u_A Cell division control p 97.5 0.0047 1.6E-07 64.2 19.2 236 1-257 82-352 (387)
163 4gt6_A Cell surface protein; l 97.4 0.00048 1.6E-08 72.2 10.8 81 551-654 284-368 (394)
164 3rw6_A Nuclear RNA export fact 97.4 0.00013 4.4E-09 71.4 5.5 79 352-432 168-258 (267)
165 2qby_B CDC6 homolog 3, cell di 97.3 0.011 3.9E-07 61.2 19.7 233 2-258 86-341 (384)
166 1njg_A DNA polymerase III subu 97.3 0.001 3.5E-08 64.1 10.2 105 45-153 125-231 (250)
167 1fnn_A CDC6P, cell division co 97.3 0.023 7.9E-07 59.0 21.3 238 2-258 78-353 (389)
168 3rw6_A Nuclear RNA export fact 97.2 0.00026 8.7E-09 69.3 5.4 84 323-409 167-259 (267)
169 4gt6_A Cell surface protein; l 97.0 0.0056 1.9E-07 64.0 13.2 100 550-676 260-363 (394)
170 4h09_A Hypothetical leucine ri 96.7 0.015 5.1E-07 60.3 13.7 78 551-650 259-340 (379)
171 2chg_A Replication factor C sm 96.3 0.029 9.8E-07 52.8 12.0 102 45-150 101-204 (226)
172 4h09_A Hypothetical leucine ri 96.1 0.059 2E-06 55.7 13.6 68 550-621 281-352 (379)
173 2qby_A CDC6 homolog 1, cell di 95.9 0.015 5E-07 60.3 8.3 237 2-257 81-349 (386)
174 1sxj_B Activator 1 37 kDa subu 95.9 0.094 3.2E-06 52.6 14.0 104 44-151 105-211 (323)
175 3rfe_A Platelet glycoprotein I 94.4 0.065 2.2E-06 45.9 6.1 42 345-388 24-66 (130)
176 1hqc_A RUVB; extended AAA-ATPa 93.8 0.17 5.7E-06 50.9 9.0 105 45-153 89-214 (324)
177 3rfe_A Platelet glycoprotein I 93.7 0.073 2.5E-06 45.5 5.0 53 357-412 11-66 (130)
178 1iqp_A RFCS; clamp loader, ext 93.2 0.41 1.4E-05 47.9 10.6 101 45-152 109-214 (327)
179 1jr3_A DNA polymerase III subu 91.2 0.91 3.1E-05 46.3 10.6 102 45-150 118-221 (373)
180 1pgv_A TMD-1, tropomodulin TMD 90.9 0.033 1.1E-06 51.3 -0.8 14 354-367 98-111 (197)
181 2chq_A Replication factor C sm 89.0 2.4 8.4E-05 41.9 11.3 102 45-150 101-204 (319)
182 1pgv_A TMD-1, tropomodulin TMD 88.7 0.16 5.5E-06 46.7 2.0 66 323-388 38-109 (197)
183 3bos_A Putative DNA replicatio 88.2 0.66 2.3E-05 43.8 6.2 100 46-149 104-216 (242)
184 2z4s_A Chromosomal replication 85.4 2.4 8E-05 44.5 9.0 119 46-168 194-331 (440)
185 3te6_A Regulatory protein SIR3 83.5 12 0.0004 37.1 12.6 109 3-116 86-211 (318)
186 1a5t_A Delta prime, HOLB; zinc 82.7 6.5 0.00022 39.3 10.6 95 45-148 107-203 (334)
187 1sxj_E Activator 1 40 kDa subu 82.6 3.6 0.00012 41.5 8.8 102 46-150 134-237 (354)
188 1jr3_D DNA polymerase III, del 74.7 22 0.00077 35.3 11.8 115 30-148 59-183 (343)
189 1sxj_D Activator 1 41 kDa subu 72.7 17 0.00059 36.2 10.4 98 45-149 132-234 (353)
190 1l8q_A Chromosomal replication 70.7 3.9 0.00013 40.7 4.8 92 47-144 99-202 (324)
191 1d2n_A N-ethylmaleimide-sensit 63.8 53 0.0018 31.2 11.4 116 42-167 120-259 (272)
192 3u61_B DNA polymerase accessor 62.3 34 0.0012 33.5 10.0 132 10-147 60-213 (324)
193 3h4m_A Proteasome-activating n 62.1 39 0.0013 32.3 10.2 99 44-147 108-228 (285)
194 1sxj_A Activator 1 95 kDa subu 61.9 13 0.00046 39.6 7.2 101 45-151 147-254 (516)
195 3pvs_A Replication-associated 59.0 27 0.00092 36.4 8.7 104 44-148 104-213 (447)
196 3pfi_A Holliday junction ATP-d 58.2 1.4E+02 0.0046 29.2 13.7 100 45-150 105-227 (338)
197 1g5t_A COB(I)alamin adenosyltr 53.9 18 0.00062 32.8 5.5 69 33-103 106-180 (196)
198 2qz4_A Paraplegin; AAA+, SPG7, 52.7 60 0.0021 30.4 9.6 102 45-149 97-221 (262)
199 3uk6_A RUVB-like 2; hexameric 51.2 56 0.0019 32.6 9.6 92 48-147 191-300 (368)
200 3syl_A Protein CBBX; photosynt 44.6 68 0.0023 31.0 8.7 69 47-117 131-218 (309)
201 2gno_A DNA polymerase III, gam 44.3 17 0.00059 35.7 4.1 71 45-116 81-152 (305)
202 2qp9_X Vacuolar protein sortin 41.0 2.5E+02 0.0085 27.8 12.4 100 45-150 142-261 (355)
203 1jbk_A CLPB protein; beta barr 39.2 39 0.0013 29.5 5.5 66 44-111 113-193 (195)
204 3eie_A Vacuolar protein sortin 39.0 2.8E+02 0.0095 26.9 13.3 100 45-150 109-228 (322)
205 1sxj_C Activator 1 40 kDa subu 37.1 1.2E+02 0.0041 29.8 9.3 98 45-146 109-208 (340)
206 2kjq_A DNAA-related protein; s 30.7 19 0.00066 30.9 1.7 40 46-85 83-124 (149)
207 2vda_B Maltoporin; sugar trans 21.2 50 0.0017 18.3 1.5 17 140-156 9-25 (28)
208 3d8b_A Fidgetin-like protein 1 20.6 5.4E+02 0.018 25.2 10.7 100 45-150 175-295 (357)
209 2c9o_A RUVB-like 1; hexameric 20.4 2E+02 0.007 29.6 7.7 92 49-148 298-408 (456)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=7.6e-35 Score=322.43 Aligned_cols=261 Identities=17% Similarity=0.251 Sum_probs=207.2
Q ss_pred CeEEecCCC--CHHHHHHHHHHHhcCCCC-------CCchHHHHHHHHHHHcCCc-cEEEEEECCcCCCccchhhhhhhh
Q 038430 1 MWVCVSDTF--EEISVANAIIEGLGESTS-------SLSEFQSLMSHIHRSIEGK-KNFLILNDVWDGDYNKWAPFFLCL 70 (677)
Q Consensus 1 ~WV~vs~~~--~~~~i~~~i~~~l~~~~~-------~~~~~~~~~~~i~~~L~~k-r~LlVlDdvw~~~~~~~~~l~~~~ 70 (677)
+||+|++.+ ++.+++++|+++++.... +..+.+.++..+++.|+++ ||||||||||+.++..|..
T Consensus 188 ~wv~vs~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~----- 262 (549)
T 2a5y_B 188 VWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQ----- 262 (549)
T ss_dssp EEEECCCCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHH-----
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhcccc-----
Confidence 599999985 899999999999987521 2235677889999999996 9999999999863222332
Q ss_pred cCCCCCcEEEEEcCchHHHHhcC-CCCeEecCCCChHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHhcCCchHHHHH
Q 038430 71 NHGLHGSKILVTTRNELVARMMG-STNIIFIEQLTEEECWSLFKRLAFFGCSFEDCERLEPIGQKIARKCKGLPIAAKVI 149 (677)
Q Consensus 71 ~~~~~gS~IiiTTR~~~v~~~~~-~~~~~~v~~L~~~ea~~LF~~~af~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~i 149 (677)
.+||+||||||++.++..++ ...+|+|++|+.+|||+||+++||+... .+.+.+++++|+++|+|+||||+++
T Consensus 263 ---~~gs~ilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~---~~~~~~~~~~I~~~c~GlPLAl~~~ 336 (549)
T 2a5y_B 263 ---ELRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPV---GEKEEDVLNKTIELSSGNPATLMMF 336 (549)
T ss_dssp ---HTTCEEEEEESBGGGGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ---cCCCEEEEEcCCHHHHHHcCCCCeEEECCCCCHHHHHHHHHHHhcCCCC---chhHHHHHHHHHHHhCCChHHHHHH
Confidence 16999999999999998876 4468999999999999999999986532 3678889999999999999999999
Q ss_pred HHHhccCCCHHHHHHHHhhhhhhhhhcCCCccceeecccccCCCchhhhHHHh-----------hhccCCCCceecHHHH
Q 038430 150 GNLLRSKSTIKDWQRILDSEMWKAEEIGKGLLTPLLLSYNDLSSNSMVKRFFS-----------YCAVFPKDYNMYKEEL 218 (677)
Q Consensus 150 g~~L~~~~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~Sy~~L~~~~~~k~~fl-----------~~a~fp~~~~i~~~~l 218 (677)
|+.|+.+ +++ |...+....+.. ....+..++.+||+.|+. ++|.||+ |||+||+++.++
T Consensus 337 g~~l~~~-~w~-~~~~l~~~l~~~--~~~~i~~~l~~Sy~~L~~--~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~---- 406 (549)
T 2a5y_B 337 FKSCEPK-TFE-KMAQLNNKLESR--GLVGVECITPYSYKSLAM--ALQRCVEVLSDEDRSALAFAVVMPPGVDIP---- 406 (549)
T ss_dssp HTTCCSS-SHH-HHHHHHHHHHHH--CSSTTCCCSSSSSSSHHH--HHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----
T ss_pred HHHhccc-hHH-HHHHhHHHhhcc--cHHHHHHHHhcccccccH--HHHHHHhccchhhhhHhhheeeeCCCCeee----
Confidence 9999776 332 223333322211 356799999999999998 9999999 999999999998
Q ss_pred HHHHHHc--CCcCcch-hhhHHHhHHHHHHHHHHccCccccccCCCCCeeeEEeChhHHHHHHHHhccccE
Q 038430 219 ISLWMAQ--GYLNAEE-YEEKEMTGEECFNILAARSFFQEFEKNDDDDIMSCKMHDIVHDFAQFVSSKECL 286 (677)
Q Consensus 219 i~~wi~~--g~i~~~~-~~~~~~~~~~~~~~L~~~sll~~~~~~~~~~~~~~~mhdli~d~~~~~~~~~~~ 286 (677)
+.+|+++ ||+.... ..+.++.+. ++++|+++++++....+ ....|+|||+++++++.++..++.
T Consensus 407 i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~~L~~rsLl~~~~~~---~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 407 VKLWSCVIPVDICSNEEEQLDDEVAD-RLKRLSKRGALLSGKRM---PVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HHHHHHHSCC-------CCCTHHHHH-HHHHTTTBSSCSEEECS---SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred eeeeeeeccceeccCCCCCCHHHHHH-HHHHHHHcCCeeEecCC---CceEEEeChHHHHHHHHHHHHHHH
Confidence 8899999 9997665 444666676 99999999999987643 345799999999999988877654
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.94 E-value=2.9e-27 Score=265.13 Aligned_cols=230 Identities=20% Similarity=0.276 Sum_probs=180.8
Q ss_pred CeEEecCCCCHHHHHHHHHHHhcCCC------CC-----CchHHHHHHHHHHHc---CCccEEEEEECCcCCCccchhhh
Q 038430 1 MWVCVSDTFEEISVANAIIEGLGEST------SS-----LSEFQSLMSHIHRSI---EGKKNFLILNDVWDGDYNKWAPF 66 (677)
Q Consensus 1 ~WV~vs~~~~~~~i~~~i~~~l~~~~------~~-----~~~~~~~~~~i~~~L---~~kr~LlVlDdvw~~~~~~~~~l 66 (677)
+||+|++.++...++..|++.++... .+ ..+.+.+...+++.| .+||+||||||||+. ..|..+
T Consensus 185 ~WVsVs~~~d~~~IL~~Ll~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~--eqLe~f 262 (1221)
T 1vt4_I 185 FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA--KAWNAF 262 (1221)
T ss_dssp EEEECCCSSSHHHHHHHHHHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCH--HHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChH--HHHHhh
Confidence 59999999999999998887643211 11 124556677777766 789999999999985 566553
Q ss_pred hhhhcCCCCCcEEEEEcCchHHHHhcCCCCeEecC------CCChHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHhc
Q 038430 67 FLCLNHGLHGSKILVTTRNELVARMMGSTNIIFIE------QLTEEECWSLFKRLAFFGCSFEDCERLEPIGQKIARKCK 140 (677)
Q Consensus 67 ~~~~~~~~~gS~IiiTTR~~~v~~~~~~~~~~~v~------~L~~~ea~~LF~~~af~~~~~~~~~~~~~~~~~i~~~c~ 140 (677)
+ +|||||||||++.++..+.....|+|+ +|+.+|||+||++. ++.. ..++..++ |+
T Consensus 263 ----~---pGSRILVTTRd~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~-~g~~-------~eeL~~eI---Cg 324 (1221)
T 1vt4_I 263 ----N---LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY-LDCR-------PQDLPREV---LT 324 (1221)
T ss_dssp ----H---SSCCEEEECSCSHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHH-HCCC-------TTTHHHHH---CC
T ss_pred ----C---CCeEEEEeccChHHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHH-cCCC-------HHHHHHHH---hC
Confidence 2 699999999999998765444467777 99999999999998 3322 22334444 99
Q ss_pred CCchHHHHHHHHhccC-CCHHHHHHHHhhhhhhhhhcCCCccceeecccccCCCchhh-hHHHhhhccCCCCceecHHHH
Q 038430 141 GLPIAAKVIGNLLRSK-STIKDWQRILDSEMWKAEEIGKGLLTPLLLSYNDLSSNSMV-KRFFSYCAVFPKDYNMYKEEL 218 (677)
Q Consensus 141 GlPLal~~ig~~L~~~-~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~Sy~~L~~~~~~-k~~fl~~a~fp~~~~i~~~~l 218 (677)
|+||||+++|+.|+.+ .+..+|+.. ....+..++.+||+.|++ +. |.||++||+||+++.+++..+
T Consensus 325 GLPLALkLaGs~Lr~k~~s~eeW~~~----------~~~~I~aaLelSYd~Lp~--eelK~cFL~LAIFPed~~I~~elL 392 (1221)
T 1vt4_I 325 TNPRRLSIIAESIRDGLATWDNWKHV----------NCDKLTTIIESSLNVLEP--AEYRKMFDRLSVFPPSAHIPTILL 392 (1221)
T ss_dssp CCHHHHHHHHHHHHHSCSSHHHHHHC----------SCHHHHHHHHHHHHHSCT--THHHHHHHHTTSSCTTSCEEHHHH
T ss_pred CCHHHHHHHHHHHhCCCCCHHHHhcC----------ChhHHHHHHHHHHHhCCH--HHHHHHHHHHhCCCCCCCCCHHHH
Confidence 9999999999999987 467888753 124578889999999999 78 999999999999999999999
Q ss_pred HHHHHHcCCcCcchhhhHHHhHHHHHHHHHHccCccccccCCCCCeeeEEeChhHHHHH
Q 038430 219 ISLWMAQGYLNAEEYEEKEMTGEECFNILAARSFFQEFEKNDDDDIMSCKMHDIVHDFA 277 (677)
Q Consensus 219 i~~wi~~g~i~~~~~~~~~~~~~~~~~~L~~~sll~~~~~~~~~~~~~~~mhdli~d~~ 277 (677)
+.+|+++| ++.+..++++|++++|++.. +....|+||+++++++
T Consensus 393 a~LW~aeG----------eedAe~~L~eLvdRSLLq~d-----~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 393 SLIWFDVI----------KSDVMVVVNKLHKYSLVEKQ-----PKESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHCSSC----------SHHHHHHHHHHHTSSSSSBC-----SSSSEEBCCCHHHHHH
T ss_pred HHHhcCCC----------HHHHHHHHHHHHhhCCEEEe-----CCCCEEEehHHHHHHh
Confidence 99999876 12477899999999999873 2234699999998865
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.93 E-value=1e-25 Score=275.39 Aligned_cols=252 Identities=21% Similarity=0.327 Sum_probs=200.2
Q ss_pred CeEEecCCC--CHHHHHHHHHHHhcCCCC----CCchHHHHHHHHHHHcCCc--cEEEEEECCcCCCccchhhhhhhhcC
Q 038430 1 MWVCVSDTF--EEISVANAIIEGLGESTS----SLSEFQSLMSHIHRSIEGK--KNFLILNDVWDGDYNKWAPFFLCLNH 72 (677)
Q Consensus 1 ~WV~vs~~~--~~~~i~~~i~~~l~~~~~----~~~~~~~~~~~i~~~L~~k--r~LlVlDdvw~~~~~~~~~l~~~~~~ 72 (677)
+||++++.. +....++.++..+..... ...+.+.+...+++.+.++ |+||||||||+. ..|..+
T Consensus 183 ~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~~~~~~------ 254 (1249)
T 3sfz_A 183 HWVSIGKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--WVLKAF------ 254 (1249)
T ss_dssp EEEECCSCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--HHHTTT------
T ss_pred EEEEECCcCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH--HHHHhh------
Confidence 399999854 455567788888876542 2357788999999999877 999999999975 444432
Q ss_pred CCCCcEEEEEcCchHHHHh-cCCCCeEecCC-CChHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHhcCCchHHHHHH
Q 038430 73 GLHGSKILVTTRNELVARM-MGSTNIIFIEQ-LTEEECWSLFKRLAFFGCSFEDCERLEPIGQKIARKCKGLPIAAKVIG 150 (677)
Q Consensus 73 ~~~gS~IiiTTR~~~v~~~-~~~~~~~~v~~-L~~~ea~~LF~~~af~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~ig 150 (677)
.+||+||||||++.++.. ++....+++++ |+.+||++||...++.. .+.+.+++++|+++|+|+||||+++|
T Consensus 255 -~~~~~ilvTtR~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~-----~~~~~~~~~~i~~~~~glPLal~~~~ 328 (1249)
T 3sfz_A 255 -DNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMK-----KEDLPAEAHSIIKECKGSPLVVSLIG 328 (1249)
T ss_dssp -CSSCEEEEEESSTTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC-----STTCCTHHHHHHHHTTTCHHHHHHHH
T ss_pred -cCCCEEEEEcCCHHHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCC-----hhhCcHHHHHHHHHhCCCHHHHHHHH
Confidence 579999999999999865 45667899996 99999999999988432 23456779999999999999999999
Q ss_pred HHhccCCCHHHHHHHHhhhhhhhh----h----cCCCccceeecccccCCCchhhhHHHhhhccCCCCceecHHHHHHHH
Q 038430 151 NLLRSKSTIKDWQRILDSEMWKAE----E----IGKGLLTPLLLSYNDLSSNSMVKRFFSYCAVFPKDYNMYKEELISLW 222 (677)
Q Consensus 151 ~~L~~~~~~~~w~~~l~~~~~~~~----~----~~~~i~~~l~~Sy~~L~~~~~~k~~fl~~a~fp~~~~i~~~~li~~w 222 (677)
++|+.+. ..|+..++....... . ....+..++.+||+.|++ +.|.||++||+||+++.+++..++.+|
T Consensus 329 ~~l~~~~--~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~--~~~~~~~~l~~f~~~~~i~~~~~~~~~ 404 (1249)
T 3sfz_A 329 ALLRDFP--NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRE--DIKDYYTDLSILQKDVKVPTKVLCVLW 404 (1249)
T ss_dssp HHHHHSS--SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCT--TTHHHHHHGGGSCTTCCEEHHHHHHHH
T ss_pred HHhhcCh--hHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCH--HHHHHHHHhCccCCCCeeCHHHHHHHh
Confidence 9998874 467777654211110 0 013478889999999999 899999999999999999999999999
Q ss_pred HHcCCcCcchhhhHHHhHHHHHHHHHHccCccccccCCCCCeeeEEeChhHHHHHHHHhccc
Q 038430 223 MAQGYLNAEEYEEKEMTGEECFNILAARSFFQEFEKNDDDDIMSCKMHDIVHDFAQFVSSKE 284 (677)
Q Consensus 223 i~~g~i~~~~~~~~~~~~~~~~~~L~~~sll~~~~~~~~~~~~~~~mhdli~d~~~~~~~~~ 284 (677)
.++ ++.+.+++++|++++|++... .+....|+||++++++++....++
T Consensus 405 ~~~-----------~~~~~~~l~~L~~~sl~~~~~---~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 405 DLE-----------TEEVEDILQEFVNKSLLFCNR---NGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp TCC-----------HHHHHHHHHHHHHTTSCEEEE---SSSSEEEECCHHHHHHHHHHTGGG
T ss_pred CCC-----------HHHHHHHHHHHHhccceEEec---CCCceEEEecHHHHHHHHhhhhHH
Confidence 654 356788999999999998644 344457999999999999886655
No 4
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.89 E-value=8.3e-23 Score=223.25 Aligned_cols=292 Identities=18% Similarity=0.165 Sum_probs=216.2
Q ss_pred cCCCceEEEEEEecCCCccc-ccccCCCcccEEEeCCCCCCCCCCccC-CcccCCCCCcCEEEecCccccccchh-hccC
Q 038430 300 AFGGKVRHLGLKFKGGASFP-MSIHGLNRLRTLLIDDESPPNSSLDKI-PENVGKLMHLKYLNLSELHIERLPKT-LCEL 376 (677)
Q Consensus 300 ~~~~~l~~L~l~~~~~~~~p-~~~~~l~~L~~L~l~~~~l~~~~~~~l-p~~~~~l~~L~~L~Ls~~~i~~lp~~-i~~l 376 (677)
.++..++.|++++|.+..++ ..|..+++|++|++++ + .+..+ |..++++++|++|+|++|.++.+|.. +.++
T Consensus 29 ~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~----n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 103 (477)
T 2id5_A 29 GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNE----N-IVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGL 103 (477)
T ss_dssp CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTT----S-CCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTC
T ss_pred CCCCCCcEEECCCCccceECHhHccCCCCCCEEECCC----C-ccCEeChhhhhCCccCCEEECCCCcCCccCcccccCC
Confidence 45778999999999998875 6899999999999996 3 34444 67789999999999999999988875 7899
Q ss_pred CCcCEEEecCCCCccccCcccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcC
Q 038430 377 YNLQKLDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLI 456 (677)
Q Consensus 377 ~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L 456 (677)
++|++|+|++|......|..+..+++|++|++++|......|..++.+++|++|++.++... ......+..+++|
T Consensus 104 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-----~~~~~~l~~l~~L 178 (477)
T 2id5_A 104 SNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-----SIPTEALSHLHGL 178 (477)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS-----SCCHHHHTTCTTC
T ss_pred CCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc-----ccChhHhcccCCC
Confidence 99999999999844555678999999999999999655555677999999999999988765 3344567888999
Q ss_pred CcccccCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhh
Q 038430 457 RKCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEE 536 (677)
Q Consensus 457 ~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (677)
+.|.+.+.. +.......+..+++|+.|+++.|....
T Consensus 179 ~~L~l~~n~----i~~~~~~~~~~l~~L~~L~l~~~~~~~---------------------------------------- 214 (477)
T 2id5_A 179 IVLRLRHLN----INAIRDYSFKRLYRLKVLEISHWPYLD---------------------------------------- 214 (477)
T ss_dssp CEEEEESCC----CCEECTTCSCSCTTCCEEEEECCTTCC----------------------------------------
T ss_pred cEEeCCCCc----CcEeChhhcccCcccceeeCCCCcccc----------------------------------------
Confidence 999988743 222333457788999999999872111
Q ss_pred hhcchhhHHHHhhhcCCCCCCcEEEEecCCCCCCCh-hHhhccCCCeEEEeCCCCCCcCCC--CCCcc-cceeecccccc
Q 038430 537 RRRKNEKDEQLLEALQPPLNVEKLWILFNGGNILPK-WLTSLTNLSDLKLVFCENCEQLPP--LGKLP-LEKLELCHLKS 612 (677)
Q Consensus 537 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~c~~~~~l~~--l~~l~-L~~L~l~~~~~ 612 (677)
.+........+|+.|++++|.+..+|. .+..+++|+.|+|++| .+..++. +..++ |+.|++++ +.
T Consensus 215 ---------~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~-n~ 283 (477)
T 2id5_A 215 ---------TMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN-PISTIEGSMLHELLRLQEIQLVG-GQ 283 (477)
T ss_dssp ---------EECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSS-CCCEECTTSCTTCTTCCEEECCS-SC
T ss_pred ---------ccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCC-cCCccChhhccccccCCEEECCC-Cc
Confidence 011122233488999999998888884 4668889999999888 4555553 77888 99999987 45
Q ss_pred ceEeCCccccCCCCCCCCCCCCCCCcccCCCccceeeecccccCccccccCCccccCCCcccccC
Q 038430 613 VKRVGNEFLEIEESEDDPSSSSSSSSVTAFPKVKSLEIKELEEGNYRITRKENISIIPRLSSLRI 677 (677)
Q Consensus 613 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~i 677 (677)
++.+....+ ..+++|+.|+++++.-..++.. .+..+++|++|++
T Consensus 284 l~~~~~~~~------------------~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~l 327 (477)
T 2id5_A 284 LAVVEPYAF------------------RGLNYLRVLNVSGNQLTTLEES---VFHSVGNLETLIL 327 (477)
T ss_dssp CSEECTTTB------------------TTCTTCCEEECCSSCCSCCCGG---GBSCGGGCCEEEC
T ss_pred cceECHHHh------------------cCcccCCEEECCCCcCceeCHh---HcCCCcccCEEEc
Confidence 666644332 4567777777777654333321 1224667776654
No 5
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.88 E-value=7.2e-23 Score=231.16 Aligned_cols=332 Identities=14% Similarity=0.121 Sum_probs=215.9
Q ss_pred CCceEEEEEEecCCCc------------------cccccc--CCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEe
Q 038430 302 GGKVRHLGLKFKGGAS------------------FPMSIH--GLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNL 361 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~~------------------~p~~~~--~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~L 361 (677)
..+++.|++++|.+.. +|..+. ++++|++|++++ +.....+|..++++++|++|++
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~----n~l~~~~p~~l~~l~~L~~L~L 280 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYN----CPNLTKLPTFLKALPEMQLINV 280 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEEC----CTTCSSCCTTTTTCSSCCEEEC
T ss_pred ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecC----CcCCccChHHHhcCCCCCEEEC
Confidence 5689999999999987 898888 999999999997 5556788988999999999999
Q ss_pred cCcc-cc--ccchhhccC------CCcCEEEecCCCCccccCc--ccccccccceeecCccCCCcccCCcCCCCCCCCcc
Q 038430 362 SELH-IE--RLPKTLCEL------YNLQKLDIRGCRNLRELPT--GIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTL 430 (677)
Q Consensus 362 s~~~-i~--~lp~~i~~l------~~L~~L~L~~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L 430 (677)
++|. ++ .+|..++++ ++|++|++++|. +..+|. .++++++|++|++++|...+.+| .++.+++|++|
T Consensus 281 s~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L 358 (636)
T 4eco_A 281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASL 358 (636)
T ss_dssp TTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEE
T ss_pred cCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEE
Confidence 9998 87 488888877 999999999998 669998 89999999999999996555888 88899999999
Q ss_pred CceeeCCCcCCCCcccccccccCCc-CCcccccCccCCCChhHHHHhhccCC--cccCceEEEeecCCCCCccccccccc
Q 038430 431 DKFAVGGGVDGGSTCRLECLKNFQL-IRKCGIEGLSNVSHLDEAERLELKNM--ENLLHLYLWFEVVDREDEDWEDEEEN 507 (677)
Q Consensus 431 ~l~~~~~~~~~~~~~~~~~L~~l~~-L~~L~i~~~~~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~ 507 (677)
++.++.... ....+..+++ |+.|.+++..-. .+ +..+..+ ++|+.|+++.|......|.+...
T Consensus 359 ~L~~N~l~~------lp~~l~~l~~~L~~L~Ls~N~l~-~l----p~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~--- 424 (636)
T 4eco_A 359 NLAYNQITE------IPANFCGFTEQVENLSFAHNKLK-YI----PNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDP--- 424 (636)
T ss_dssp ECCSSEEEE------CCTTSEEECTTCCEEECCSSCCS-SC----CSCCCTTCSSCEEEEECCSSCTTTTTTCSSCT---
T ss_pred ECCCCcccc------ccHhhhhhcccCcEEEccCCcCc-cc----chhhhhcccCccCEEECcCCcCCCcchhhhcc---
Confidence 988776542 3455777888 888888875321 22 2233333 47888888877332211111000
Q ss_pred ccCCCCCCCCCCCcccccCCccccchhhhhhcchhhHHHHhh-hcCCCCCCcEEEEecCCCCCCChhHhh--------cc
Q 038430 508 EDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKNEKDEQLLE-ALQPPLNVEKLWILFNGGNILPKWLTS--------LT 578 (677)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~lp~~~~~--------l~ 578 (677)
...... ......+......... .++. .+..+++|+.|++++|.+..+|..+.. ++
T Consensus 425 -------------~~~~~~-~~~~L~~L~Ls~N~l~--~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~ 488 (636)
T 4eco_A 425 -------------LDPTPF-KGINVSSINLSNNQIS--KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTY 488 (636)
T ss_dssp -------------TCSSCC-CCCCEEEEECCSSCCC--SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGG
T ss_pred -------------cccccc-cCCCCCEEECcCCccC--cCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccC
Confidence 000000 0000000000000000 1111 122356788888888877777765442 22
Q ss_pred CCCeEEEeCCCCCCcCCC-CC--Ccc-cceeeccccccceEeCCccccCCC-----------CCCCCCCCCCCCcccCCC
Q 038430 579 NLSDLKLVFCENCEQLPP-LG--KLP-LEKLELCHLKSVKRVGNEFLEIEE-----------SEDDPSSSSSSSSVTAFP 643 (677)
Q Consensus 579 ~L~~L~l~~c~~~~~l~~-l~--~l~-L~~L~l~~~~~l~~i~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~ 643 (677)
+|++|++++| .+..+|. +. .++ |+.|++++ +.++.++..+..... ..++.+.+..|.....++
T Consensus 489 ~L~~L~Ls~N-~l~~lp~~~~~~~l~~L~~L~Ls~-N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~ 566 (636)
T 4eco_A 489 LLTSIDLRFN-KLTKLSDDFRATTLPYLVGIDLSY-NSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCP 566 (636)
T ss_dssp GCCEEECCSS-CCCBCCGGGSTTTCTTCCEEECCS-SCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCS
T ss_pred CccEEECcCC-cCCccChhhhhccCCCcCEEECCC-CCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCC
Confidence 7888888877 4556665 43 777 88888877 345545433321110 023445666666666677
Q ss_pred ccceeeecccccCccccccCCccccCCCcccccC
Q 038430 644 KVKSLEIKELEEGNYRITRKENISIIPRLSSLRI 677 (677)
Q Consensus 644 ~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~i 677 (677)
+|++|++++|.-..++.. .+++|++|+|
T Consensus 567 ~L~~L~Ls~N~l~~ip~~------~~~~L~~L~L 594 (636)
T 4eco_A 567 SLTQLQIGSNDIRKVNEK------ITPNISVLDI 594 (636)
T ss_dssp SCCEEECCSSCCCBCCSC------CCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCHh------HhCcCCEEEC
Confidence 777777776655434322 3366666654
No 6
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.88 E-value=4.5e-22 Score=207.90 Aligned_cols=274 Identities=18% Similarity=0.158 Sum_probs=179.2
Q ss_pred CCceEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcCE
Q 038430 302 GGKVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQK 381 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~ 381 (677)
..+++.|++++|.+..++. +..+++|++|++++| .+..+| .+..+++|++|++++|.+..+|. +..+++|++
T Consensus 65 ~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n-----~i~~~~-~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~ 136 (347)
T 4fmz_A 65 LTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTN-----KITDIS-ALQNLTNLRELYLNEDNISDISP-LANLTKMYS 136 (347)
T ss_dssp CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-----CCCCCG-GGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCE
T ss_pred cCCccEEEccCCccccchh-hhcCCcCCEEEccCC-----cccCch-HHcCCCcCCEEECcCCcccCchh-hccCCceeE
Confidence 4567777777777666664 666777777777642 333343 46667777777777777766655 667777777
Q ss_pred EEecCCCCccccCcccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccc
Q 038430 382 LDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGI 461 (677)
Q Consensus 382 L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i 461 (677)
|++++|.....++. +..+++|++|++++|. +..++. ++.+++|++|++.++.... +..+..+++|+.+.+
T Consensus 137 L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~-~~~~~~-~~~l~~L~~L~l~~n~l~~-------~~~~~~l~~L~~L~l 206 (347)
T 4fmz_A 137 LNLGANHNLSDLSP-LSNMTGLNYLTVTESK-VKDVTP-IANLTDLYSLSLNYNQIED-------ISPLASLTSLHYFTA 206 (347)
T ss_dssp EECTTCTTCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCSEEECTTSCCCC-------CGGGGGCTTCCEEEC
T ss_pred EECCCCCCcccccc-hhhCCCCcEEEecCCC-cCCchh-hccCCCCCEEEccCCcccc-------cccccCCCccceeec
Confidence 77777764554444 6677777777777763 333333 6666777777766655432 222566666666666
Q ss_pred cCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcch
Q 038430 462 EGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKN 541 (677)
Q Consensus 462 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (677)
.+..-. ... .+..+++|+.|++++|....
T Consensus 207 ~~n~l~-~~~-----~~~~~~~L~~L~l~~n~l~~--------------------------------------------- 235 (347)
T 4fmz_A 207 YVNQIT-DIT-----PVANMTRLNSLKIGNNKITD--------------------------------------------- 235 (347)
T ss_dssp CSSCCC-CCG-----GGGGCTTCCEEECCSSCCCC---------------------------------------------
T ss_pred ccCCCC-CCc-----hhhcCCcCCEEEccCCccCC---------------------------------------------
Confidence 653221 111 15566777777777661111
Q ss_pred hhHHHHhhhcCCCCCCcEEEEecCCCCCCChhHhhccCCCeEEEeCCCCCCcCCCCCCcc-cceeeccccccceEeCCcc
Q 038430 542 EKDEQLLEALQPPLNVEKLWILFNGGNILPKWLTSLTNLSDLKLVFCENCEQLPPLGKLP-LEKLELCHLKSVKRVGNEF 620 (677)
Q Consensus 542 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~~~~l~~l~~l~-L~~L~l~~~~~l~~i~~~~ 620 (677)
...+..+++|+.|++++|.+..++ .+..+++|++|++++| .+..++.+..++ |+.|++++|. ++.+....
T Consensus 236 ------~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~ 306 (347)
T 4fmz_A 236 ------LSPLANLSQLTWLEIGTNQISDIN-AVKDLTKLKMLNVGSN-QISDISVLNNLSQLNSLFLNNNQ-LGNEDMEV 306 (347)
T ss_dssp ------CGGGTTCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSC-CCGGGHHH
T ss_pred ------CcchhcCCCCCEEECCCCccCCCh-hHhcCCCcCEEEccCC-ccCCChhhcCCCCCCEEECcCCc-CCCcChhH
Confidence 011556788999999998887774 5778889999999888 666677788888 9999998853 44333222
Q ss_pred ccCCCCCCCCCCCCCCCcccCCCccceeeeccccc-CccccccCCccccCCCcccccC
Q 038430 621 LEIEESEDDPSSSSSSSSVTAFPKVKSLEIKELEE-GNYRITRKENISIIPRLSSLRI 677 (677)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~p~L~~L~i 677 (677)
...+++|+.|++++|+- ...+.. .+|+|++|++
T Consensus 307 ------------------l~~l~~L~~L~L~~n~l~~~~~~~------~l~~L~~L~l 340 (347)
T 4fmz_A 307 ------------------IGGLTNLTTLFLSQNHITDIRPLA------SLSKMDSADF 340 (347)
T ss_dssp ------------------HHTCTTCSEEECCSSSCCCCGGGG------GCTTCSEESS
T ss_pred ------------------hhccccCCEEEccCCccccccChh------hhhccceeeh
Confidence 25689999999999987 433322 6899999875
No 7
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.88 E-value=3.5e-23 Score=212.75 Aligned_cols=248 Identities=20% Similarity=0.203 Sum_probs=206.9
Q ss_pred CceEEEEEEecCCC---cccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCcccc-ccchhhccCCC
Q 038430 303 GKVRHLGLKFKGGA---SFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIE-RLPKTLCELYN 378 (677)
Q Consensus 303 ~~l~~L~l~~~~~~---~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~-~lp~~i~~l~~ 378 (677)
.+++.|+++++.+. .+|..+..+++|++|+++++ +.....+|..++.+++|++|++++|.++ .+|..+.++++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~---n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 126 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGI---NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEE---TTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTT
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCC---CcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCC
Confidence 68999999999996 58899999999999999830 3334578888999999999999999998 88999999999
Q ss_pred cCEEEecCCCCccccCcccccccccceeecCccCCCcccCCcCCCCC-CCCccCceeeCCCcCCCCcccccccccCCcCC
Q 038430 379 LQKLDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLT-SLRTLDKFAVGGGVDGGSTCRLECLKNFQLIR 457 (677)
Q Consensus 379 L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~-~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~ 457 (677)
|++|++++|.....+|..++.+++|++|++++|...+.+|..++.+. +|++|++.++... ......+..+. |+
T Consensus 127 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~-----~~~~~~~~~l~-L~ 200 (313)
T 1ogq_A 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT-----GKIPPTFANLN-LA 200 (313)
T ss_dssp CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE-----EECCGGGGGCC-CS
T ss_pred CCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeee-----ccCChHHhCCc-cc
Confidence 99999999994458999999999999999999976668999999998 9999999887765 33456677776 99
Q ss_pred cccccCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhh
Q 038430 458 KCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEER 537 (677)
Q Consensus 458 ~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (677)
.|.+++.. +.......+..+++|+.|++++|....
T Consensus 201 ~L~Ls~N~----l~~~~~~~~~~l~~L~~L~L~~N~l~~----------------------------------------- 235 (313)
T 1ogq_A 201 FVDLSRNM----LEGDASVLFGSDKNTQKIHLAKNSLAF----------------------------------------- 235 (313)
T ss_dssp EEECCSSE----EEECCGGGCCTTSCCSEEECCSSEECC-----------------------------------------
T ss_pred EEECcCCc----ccCcCCHHHhcCCCCCEEECCCCceee-----------------------------------------
Confidence 99998742 333344567889999999999882211
Q ss_pred hcchhhHHHHhhhcCCCCCCcEEEEecCCCC-CCChhHhhccCCCeEEEeCCCCCCcCCCCCCcc-cceeeccccccc
Q 038430 538 RRKNEKDEQLLEALQPPLNVEKLWILFNGGN-ILPKWLTSLTNLSDLKLVFCENCEQLPPLGKLP-LEKLELCHLKSV 613 (677)
Q Consensus 538 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~lp~~~~~l~~L~~L~l~~c~~~~~l~~l~~l~-L~~L~l~~~~~l 613 (677)
....+..+++|++|++++|.+. .+|.++..+++|++|++++|.....+|..+.++ |+.|++.+.+.+
T Consensus 236 ---------~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 236 ---------DLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCL 304 (313)
T ss_dssp ---------BGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEE
T ss_pred ---------ecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCc
Confidence 1223566789999999999998 789999999999999999996666899889999 999999986544
No 8
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.88 E-value=1.7e-22 Score=232.37 Aligned_cols=174 Identities=13% Similarity=0.047 Sum_probs=133.8
Q ss_pred CCceEEEEEEecCCCc------------------cccccc--CCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEe
Q 038430 302 GGKVRHLGLKFKGGAS------------------FPMSIH--GLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNL 361 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~~------------------~p~~~~--~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~L 361 (677)
..+++.|++++|.+.. +|..+. ++++|++|++++ +.....+|..++++++|++|+|
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~----N~l~~~iP~~l~~L~~L~~L~L 522 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYN----CPNMTQLPDFLYDLPELQSLNI 522 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEES----CTTCCSCCGGGGGCSSCCEEEC
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcC----CCCCccChHHHhCCCCCCEEEC
Confidence 5688999999998877 888877 899999999987 5566778888899999999999
Q ss_pred cCcc-ccc--cchhhccCC-------CcCEEEecCCCCccccCc--ccccccccceeecCccCCCcccCCcCCCCCCCCc
Q 038430 362 SELH-IER--LPKTLCELY-------NLQKLDIRGCRNLRELPT--GIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRT 429 (677)
Q Consensus 362 s~~~-i~~--lp~~i~~l~-------~L~~L~L~~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~ 429 (677)
++|. ++. +|..+++++ +|++|++++|. +..+|. .++++++|++|++++|. +..+| .++.+++|+.
T Consensus 523 s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~~~~L~~L~~ 599 (876)
T 4ecn_A 523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNK-VRHLE-AFGTNVKLTD 599 (876)
T ss_dssp TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-CCCTTSEESE
T ss_pred cCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCC-cccch-hhcCCCcceE
Confidence 9997 774 787777665 99999999988 668888 89999999999999885 44888 7888899999
Q ss_pred cCceeeCCCcCCCCcccccccccCCc-CCcccccCccCCCChhHHHHhhccCC--cccCceEEEeec
Q 038430 430 LDKFAVGGGVDGGSTCRLECLKNFQL-IRKCGIEGLSNVSHLDEAERLELKNM--ENLLHLYLWFEV 493 (677)
Q Consensus 430 L~l~~~~~~~~~~~~~~~~~L~~l~~-L~~L~i~~~~~~~~~~~~~~~~l~~~--~~L~~L~l~~~~ 493 (677)
|++.++.... ....+..+++ |+.|.++++.- ..++ ..+..+ ++|+.|++++|.
T Consensus 600 L~Ls~N~l~~------lp~~l~~l~~~L~~L~Ls~N~L-~~lp----~~~~~~~~~~L~~L~Ls~N~ 655 (876)
T 4ecn_A 600 LKLDYNQIEE------IPEDFCAFTDQVEGLGFSHNKL-KYIP----NIFNAKSVYVMGSVDFSYNK 655 (876)
T ss_dssp EECCSSCCSC------CCTTSCEECTTCCEEECCSSCC-CSCC----SCCCTTCSSCEEEEECCSSC
T ss_pred EECcCCcccc------chHHHhhccccCCEEECcCCCC-CcCc----hhhhccccCCCCEEECcCCc
Confidence 9888777653 3345777777 88888877532 1221 223333 347777777763
No 9
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.88 E-value=2.8e-23 Score=239.93 Aligned_cols=272 Identities=21% Similarity=0.156 Sum_probs=148.6
Q ss_pred CCceEEEEEEecCCC-cccccccCC-CcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCcccc-ccchh-hccCC
Q 038430 302 GGKVRHLGLKFKGGA-SFPMSIHGL-NRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIE-RLPKT-LCELY 377 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~-~~p~~~~~l-~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~-~lp~~-i~~l~ 377 (677)
..+++.|++.+|.+. .+|..+... ++|++|++++ +.....+|..++.+++|++|++++|.+. .+|.. +.+++
T Consensus 268 l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~----n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~ 343 (768)
T 3rgz_A 268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSG----NHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMR 343 (768)
T ss_dssp CTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCS----SEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCT
T ss_pred cCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcC----CcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCC
Confidence 456777777777664 566555553 7777777775 3333355666777777777777777766 66655 67777
Q ss_pred CcCEEEecCCCCccccCccccccc-ccceeecCccCCCcccCCcCCC--CCCCCccCceeeCCCcCCCCcccccccccCC
Q 038430 378 NLQKLDIRGCRNLRELPTGIGKLK-NMRSLLNGLTCSLKYMPIGISK--LTSLRTLDKFAVGGGVDGGSTCRLECLKNFQ 454 (677)
Q Consensus 378 ~L~~L~L~~~~~l~~lp~~i~~l~-~L~~L~l~~~~~~~~~p~~i~~--l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~ 454 (677)
+|++|++++|.....+|..+..++ +|++|++++|...+.+|..+.. +++|++|++.++... ......+.+++
T Consensus 344 ~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-----~~~p~~l~~l~ 418 (768)
T 3rgz_A 344 GLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT-----GKIPPTLSNCS 418 (768)
T ss_dssp TCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEE-----EECCGGGGGCT
T ss_pred CCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccc-----cccCHHHhcCC
Confidence 777777777764446666666665 6666666666544445555444 555555555554433 22334445555
Q ss_pred cCCcccccCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchh
Q 038430 455 LIRKCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEY 534 (677)
Q Consensus 455 ~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (677)
+|+.|.++++. +....+..+..+++|+.|+++.|......|.... + .....+
T Consensus 419 ~L~~L~Ls~N~----l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~--------~----------------l~~L~~ 470 (768)
T 3rgz_A 419 ELVSLHLSFNY----LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM--------Y----------------VKTLET 470 (768)
T ss_dssp TCCEEECCSSE----EESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG--------G----------------CTTCCE
T ss_pred CCCEEECcCCc----ccCcccHHHhcCCCCCEEECCCCcccCcCCHHHc--------C----------------CCCceE
Confidence 55555555421 1111222344445555555554421111110000 0 000000
Q ss_pred hhhhcchhhHHHHhhhcCCCCCCcEEEEecCCCC-CCChhHhhccCCCeEEEeCCCCCCcCCC-CCCcc-cceeeccccc
Q 038430 535 EERRRKNEKDEQLLEALQPPLNVEKLWILFNGGN-ILPKWLTSLTNLSDLKLVFCENCEQLPP-LGKLP-LEKLELCHLK 611 (677)
Q Consensus 535 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~lp~~~~~l~~L~~L~l~~c~~~~~l~~-l~~l~-L~~L~l~~~~ 611 (677)
.... .+.....++..+..+++|+.|++++|.+. .+|.+++.+++|++|++++|.....+|. ++.++ |+.|++++|+
T Consensus 471 L~L~-~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 471 LILD-FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp EECC-SSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSE
T ss_pred EEec-CCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCc
Confidence 0000 00000112334455677777777777776 5677777777777777777744445554 66677 7777777654
No 10
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.88 E-value=2.6e-22 Score=217.94 Aligned_cols=135 Identities=19% Similarity=0.169 Sum_probs=110.7
Q ss_pred CCCceEEEEEEecCCCcc-cccccCCCcccEEEeCCCCCCCCCCccC-CcccCCCCCcCEEEecCcccccc-chhhccCC
Q 038430 301 FGGKVRHLGLKFKGGASF-PMSIHGLNRLRTLLIDDESPPNSSLDKI-PENVGKLMHLKYLNLSELHIERL-PKTLCELY 377 (677)
Q Consensus 301 ~~~~l~~L~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~l~~~~~~~l-p~~~~~l~~L~~L~Ls~~~i~~l-p~~i~~l~ 377 (677)
.+.++++|++++|.+..+ |..+..+++|++|++++ +.....+ |..+.++++|++|++++|.++.+ |..+++++
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~----n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 103 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQ----QTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLA 103 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCC----CSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCT
T ss_pred CCCccCEEEecCCccCcCChhHhccCccccEEECcC----CcccceECcccccccccCCEEeCCCCccCccChhhccCcc
Confidence 578999999999999876 67899999999999997 3333344 45689999999999999999865 67899999
Q ss_pred CcCEEEecCCCCccccCcc--cccccccceeecCccCCCcccCCc-CCCCCCCCccCceeeCCCc
Q 038430 378 NLQKLDIRGCRNLRELPTG--IGKLKNMRSLLNGLTCSLKYMPIG-ISKLTSLRTLDKFAVGGGV 439 (677)
Q Consensus 378 ~L~~L~L~~~~~l~~lp~~--i~~l~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L~l~~~~~~~ 439 (677)
+|++|++++|.....+|.. ++.+++|++|++++|......|.. ++++++|++|++.++....
T Consensus 104 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (455)
T 3v47_A 104 NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS 168 (455)
T ss_dssp TCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred cCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence 9999999999844445554 889999999999999655444665 7899999999998877653
No 11
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.88 E-value=5.7e-22 Score=207.13 Aligned_cols=275 Identities=18% Similarity=0.212 Sum_probs=219.8
Q ss_pred CCceEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcCE
Q 038430 302 GGKVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQK 381 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~ 381 (677)
..+++.|++.++.+..++ .+..+++|++|++++ +.+..+|. +..+++|++|++++|.++.+| .+.++++|++
T Consensus 43 l~~L~~L~l~~~~i~~~~-~~~~~~~L~~L~l~~-----n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~ 114 (347)
T 4fmz_A 43 LESITKLVVAGEKVASIQ-GIEYLTNLEYLNLNG-----NQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRE 114 (347)
T ss_dssp HTTCSEEECCSSCCCCCT-TGGGCTTCCEEECCS-----SCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSE
T ss_pred cccccEEEEeCCccccch-hhhhcCCccEEEccC-----Cccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCE
Confidence 568899999999998887 488899999999996 45566665 899999999999999999885 6999999999
Q ss_pred EEecCCCCccccCcccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccc
Q 038430 382 LDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGI 461 (677)
Q Consensus 382 L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i 461 (677)
|++++|. +..+|. +..+++|++|++++|.....++ .+..+++|++|++.++.... ...+..+++|+.|.+
T Consensus 115 L~l~~n~-i~~~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~-------~~~~~~l~~L~~L~l 184 (347)
T 4fmz_A 115 LYLNEDN-ISDISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKD-------VTPIANLTDLYSLSL 184 (347)
T ss_dssp EECTTSC-CCCCGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCC-------CGGGGGCTTCSEEEC
T ss_pred EECcCCc-ccCchh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCC-------chhhccCCCCCEEEc
Confidence 9999998 778877 9999999999999997666554 48999999999998877553 333788899999999
Q ss_pred cCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcch
Q 038430 462 EGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKN 541 (677)
Q Consensus 462 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (677)
+++.- .... .+..+++|+.|++++|....
T Consensus 185 ~~n~l-~~~~-----~~~~l~~L~~L~l~~n~l~~--------------------------------------------- 213 (347)
T 4fmz_A 185 NYNQI-EDIS-----PLASLTSLHYFTAYVNQITD--------------------------------------------- 213 (347)
T ss_dssp TTSCC-CCCG-----GGGGCTTCCEEECCSSCCCC---------------------------------------------
T ss_pred cCCcc-cccc-----cccCCCccceeecccCCCCC---------------------------------------------
Confidence 87542 2221 16778999999998872211
Q ss_pred hhHHHHhhhcCCCCCCcEEEEecCCCCCCChhHhhccCCCeEEEeCCCCCCcCCCCCCcc-cceeeccccccceEeCCcc
Q 038430 542 EKDEQLLEALQPPLNVEKLWILFNGGNILPKWLTSLTNLSDLKLVFCENCEQLPPLGKLP-LEKLELCHLKSVKRVGNEF 620 (677)
Q Consensus 542 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~~~~l~~l~~l~-L~~L~l~~~~~l~~i~~~~ 620 (677)
...+..+++|++|++++|.+..+|. +..+++|++|++++| .+..++.+..++ |+.|++++| .++.++ .
T Consensus 214 ------~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n-~l~~~~--~ 282 (347)
T 4fmz_A 214 ------ITPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTN-QISDINAVKDLTKLKMLNVGSN-QISDIS--V 282 (347)
T ss_dssp ------CGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSS-CCCCCG--G
T ss_pred ------CchhhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCC-ccCCChhHhcCCCcCEEEccCC-ccCCCh--h
Confidence 0114567899999999999998886 889999999999999 677788889999 999999985 455542 1
Q ss_pred ccCCCCCCCCCCCCCCCcccCCCccceeeecccccCccccccCCccccCCCcccccC
Q 038430 621 LEIEESEDDPSSSSSSSSVTAFPKVKSLEIKELEEGNYRITRKENISIIPRLSSLRI 677 (677)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~i 677 (677)
...+++|+.|++++|.-..... +.+..+|+|++|++
T Consensus 283 ------------------~~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~L 318 (347)
T 4fmz_A 283 ------------------LNNLSQLNSLFLNNNQLGNEDM---EVIGGLTNLTTLFL 318 (347)
T ss_dssp ------------------GGGCTTCSEEECCSSCCCGGGH---HHHHTCTTCSEEEC
T ss_pred ------------------hcCCCCCCEEECcCCcCCCcCh---hHhhccccCCEEEc
Confidence 3678999999999997622221 22236899998875
No 12
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.87 E-value=4e-22 Score=223.71 Aligned_cols=246 Identities=20% Similarity=0.278 Sum_probs=183.0
Q ss_pred CeEEecCCCCHHHHHHH---HHHHhcCC----CCCCchHHHHHHHHHHHcCC--ccEEEEEECCcCCCccchhhhhhhhc
Q 038430 1 MWVCVSDTFEEISVANA---IIEGLGES----TSSLSEFQSLMSHIHRSIEG--KKNFLILNDVWDGDYNKWAPFFLCLN 71 (677)
Q Consensus 1 ~WV~vs~~~~~~~i~~~---i~~~l~~~----~~~~~~~~~~~~~i~~~L~~--kr~LlVlDdvw~~~~~~~~~l~~~~~ 71 (677)
+||+++.. +...++.. ++..++.. .....+.+.....+++.+.+ +++||||||||+. ..+.
T Consensus 183 ~wv~~~~~-~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~--~~l~------- 252 (591)
T 1z6t_A 183 HWVSVGKQ-DKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS--WVLK------- 252 (591)
T ss_dssp EEEEEESC-CHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH--HHHH-------
T ss_pred EEEECCCC-chHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH--HHHH-------
Confidence 59999876 33344444 34555531 12345677788888888876 7999999999874 2222
Q ss_pred CCCCCcEEEEEcCchHHHHhcCCCCeEec---CCCChHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHhcCCchHHHH
Q 038430 72 HGLHGSKILVTTRNELVARMMGSTNIIFI---EQLTEEECWSLFKRLAFFGCSFEDCERLEPIGQKIARKCKGLPIAAKV 148 (677)
Q Consensus 72 ~~~~gS~IiiTTR~~~v~~~~~~~~~~~v---~~L~~~ea~~LF~~~af~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~ 148 (677)
....|++||||||+..++..+. ...+++ ++|+.+||++||...++.. .....+.+.+|+++|+|+||||+.
T Consensus 253 ~l~~~~~ilvTsR~~~~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~-----~~~~~~~~~~i~~~~~G~PLal~~ 326 (591)
T 1z6t_A 253 AFDSQCQILLTTRDKSVTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMK-----KADLPEQAHSIIKECKGSPLVVSL 326 (591)
T ss_dssp TTCSSCEEEEEESCGGGGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSC-----GGGSCTHHHHHHHHHTTCHHHHHH
T ss_pred HhcCCCeEEEECCCcHHHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCC-----cccccHHHHHHHHHhCCCcHHHHH
Confidence 2256899999999999877654 345666 4899999999999988642 123356789999999999999999
Q ss_pred HHHHhccCCCHHHHHHHHhhhhhhhh--------hcCCCccceeecccccCCCchhhhHHHhhhccCCCCceecHHHHHH
Q 038430 149 IGNLLRSKSTIKDWQRILDSEMWKAE--------EIGKGLLTPLLLSYNDLSSNSMVKRFFSYCAVFPKDYNMYKEELIS 220 (677)
Q Consensus 149 ig~~L~~~~~~~~w~~~l~~~~~~~~--------~~~~~i~~~l~~Sy~~L~~~~~~k~~fl~~a~fp~~~~i~~~~li~ 220 (677)
+|++|+.+. ..|+..++....... .....+..++..||+.|++ +.|.||.++|+||+++.++...+..
T Consensus 327 ~a~~l~~~~--~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~--~~~~~l~~la~f~~~~~i~~~~l~~ 402 (591)
T 1z6t_A 327 IGALLRDFP--NRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRE--DIKDYYTDLSILQKDVKVPTKVLCI 402 (591)
T ss_dssp HHHHHHHST--TCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCT--TTHHHHHHGGGCCTTCCEEHHHHHH
T ss_pred HHHHHhcCc--hhHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCH--HHHHHHHHccccCCCCccCHHHHHH
Confidence 999998873 368777654221110 0113467788999999999 8999999999999999999999999
Q ss_pred HHHHcCCcCcchhhhHHHhHHHHHHHHHHccCccccccCCCCCeeeEEeChhHHHHHHHH
Q 038430 221 LWMAQGYLNAEEYEEKEMTGEECFNILAARSFFQEFEKNDDDDIMSCKMHDIVHDFAQFV 280 (677)
Q Consensus 221 ~wi~~g~i~~~~~~~~~~~~~~~~~~L~~~sll~~~~~~~~~~~~~~~mhdli~d~~~~~ 280 (677)
.|..+ .+.+..+++.|++++++..... +....|.||+++++++...
T Consensus 403 l~~~~-----------~~~~~~~l~~L~~~~Ll~~~~~---~~~~~~~~H~lv~~~~~~~ 448 (591)
T 1z6t_A 403 LWDME-----------TEEVEDILQEFVNKSLLFCDRN---GKSFRYYLHDLQVDFLTEK 448 (591)
T ss_dssp HHTCC-----------HHHHHHHHHHHHHTTSSEEEEE---TTEEEEECCHHHHHHHHHH
T ss_pred HhccC-----------HHHHHHHHHHHHhCcCeEEecC---CCccEEEEcHHHHHHHHhh
Confidence 88643 1346778999999999985432 3345799999999999876
No 13
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.87 E-value=1.2e-22 Score=229.40 Aligned_cols=312 Identities=11% Similarity=0.089 Sum_probs=187.1
Q ss_pred CCceEEEEEEecCC-CcccccccCCCcccEEEeCCCCCCCCCCc--cCCcccCCC------CCcCEEEecCccccccch-
Q 038430 302 GGKVRHLGLKFKGG-ASFPMSIHGLNRLRTLLIDDESPPNSSLD--KIPENVGKL------MHLKYLNLSELHIERLPK- 371 (677)
Q Consensus 302 ~~~l~~L~l~~~~~-~~~p~~~~~l~~L~~L~l~~~~l~~~~~~--~lp~~~~~l------~~L~~L~Ls~~~i~~lp~- 371 (677)
..+++.|++.+|.+ ..+|..+.++++|++|++++ +..+. .+|..++.+ ++|++|++++|.++.+|.
T Consensus 248 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~----n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~ 323 (636)
T 4eco_A 248 LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVAC----NRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVE 323 (636)
T ss_dssp CTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTT----CTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCH
T ss_pred cCCCCEEEecCCcCCccChHHHhcCCCCCEEECcC----CCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCch
Confidence 56899999999985 56888999999999999997 33133 577777665 888888888888888888
Q ss_pred -hhccCCCcCEEEecCCCCccccCcccccccccceeecCccCCCcccCCcCCCCCC-CCccCceeeCCCcCCCCcccccc
Q 038430 372 -TLCELYNLQKLDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTS-LRTLDKFAVGGGVDGGSTCRLEC 449 (677)
Q Consensus 372 -~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~-L~~L~l~~~~~~~~~~~~~~~~~ 449 (677)
.++++++|++|++++|...+.+| .++.+++|++|++++|. +..+|..++.+++ |++|++.++.....+ ..
T Consensus 324 ~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp------~~ 395 (636)
T 4eco_A 324 TSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQ-ITEIPANFCGFTEQVENLSFAHNKLKYIP------NI 395 (636)
T ss_dssp HHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSE-EEECCTTSEEECTTCCEEECCSSCCSSCC------SC
T ss_pred hhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCc-cccccHhhhhhcccCcEEEccCCcCcccc------hh
Confidence 78888888888888888334888 78888888888888884 5578888888887 888888777655321 12
Q ss_pred cccC--CcCCcccccCccCCCChhHHHHhhcc-------CCcccCceEEEeecCCCCCcccc---cccccccCCCCCCCC
Q 038430 450 LKNF--QLIRKCGIEGLSNVSHLDEAERLELK-------NMENLLHLYLWFEVVDREDEDWE---DEEENEDEGGEDEDE 517 (677)
Q Consensus 450 L~~l--~~L~~L~i~~~~~~~~~~~~~~~~l~-------~~~~L~~L~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 517 (677)
+..+ .+|+.|.+++..- ....+..+. .+.+|+.|++++|.....++.+. ...+..+..+- .
T Consensus 396 ~~~~~l~~L~~L~Ls~N~l----~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N---~ 468 (636)
T 4eco_A 396 FDAKSVSVMSAIDFSYNEI----GSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGN---M 468 (636)
T ss_dssp CCTTCSSCEEEEECCSSCT----TTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSS---C
T ss_pred hhhcccCccCEEECcCCcC----CCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCC---C
Confidence 2222 2455555544211 111111122 33344444444442221111000 00000000000 0
Q ss_pred CCCcccccCCccc-------cchhhhhhcchhhHHHHhhhcC--CCCCCcEEEEecCCCCCCChhHhhccCCCeEEEeC-
Q 038430 518 DGGYKEEKGGKVV-------DGEYEERRRKNEKDEQLLEALQ--PPLNVEKLWILFNGGNILPKWLTSLTNLSDLKLVF- 587 (677)
Q Consensus 518 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~--~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~- 587 (677)
....+...+.... ............. .++..+. .+++|+.|+|++|.+..+|.++..+++|+.|+|++
T Consensus 469 l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N 546 (636)
T 4eco_A 469 LTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT--KLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQ 546 (636)
T ss_dssp CSBCCSSSSEETTEECTTGGGCCEEECCSSCCC--BCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSC
T ss_pred CCCcCHHHhccccccccccCCccEEECcCCcCC--ccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCC
Confidence 0011111111000 1111111111111 3444554 67788888888888777887788888888888854
Q ss_pred -----CCCCCcCCC-CCCcc-cceeeccccccceEeCCccccCCCCCCCCCCCCCCCcccCCCccceeeecccccC
Q 038430 588 -----CENCEQLPP-LGKLP-LEKLELCHLKSVKRVGNEFLEIEESEDDPSSSSSSSSVTAFPKVKSLEIKELEEG 656 (677)
Q Consensus 588 -----c~~~~~l~~-l~~l~-L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 656 (677)
|.....+|. ++.++ |+.|+++++ .++.++. ..+++|+.|++++++-.
T Consensus 547 ~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~ip~---------------------~~~~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 547 RDAQGNRTLREWPEGITLCPSLTQLQIGSN-DIRKVNE---------------------KITPNISVLDIKDNPNI 600 (636)
T ss_dssp BCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCBCCS---------------------CCCTTCCEEECCSCTTC
T ss_pred cccccCcccccChHHHhcCCCCCEEECCCC-cCCccCH---------------------hHhCcCCEEECcCCCCc
Confidence 333455663 67778 888888774 3455432 23489999999999763
No 14
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.86 E-value=2.8e-21 Score=199.77 Aligned_cols=83 Identities=22% Similarity=0.219 Sum_probs=55.5
Q ss_pred cCCCCCCcEEEEecCCCC-CCChhHhhccCCCeEEEeCCCCCCcCCC-CCCcc-cceeeccccccceEeCCccccCCCCC
Q 038430 551 LQPPLNVEKLWILFNGGN-ILPKWLTSLTNLSDLKLVFCENCEQLPP-LGKLP-LEKLELCHLKSVKRVGNEFLEIEESE 627 (677)
Q Consensus 551 l~~~~~L~~L~l~~~~~~-~lp~~~~~l~~L~~L~l~~c~~~~~l~~-l~~l~-L~~L~l~~~~~l~~i~~~~~~~~~~~ 627 (677)
+..+++|+.|++++|.+. .+|.+++.+++|++|+|++|.....+|. ++.++ |+.|+|++|+.+..++..+
T Consensus 225 l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l------- 297 (328)
T 4fcg_A 225 IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI------- 297 (328)
T ss_dssp GGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGG-------
T ss_pred hccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHH-------
Confidence 344567777777776554 4677777777777777777766677764 67777 7777777766655554332
Q ss_pred CCCCCCCCCCcccCCCccceeeecc
Q 038430 628 DDPSSSSSSSSVTAFPKVKSLEIKE 652 (677)
Q Consensus 628 ~~~~~~~~~~~~~~~~~L~~L~l~~ 652 (677)
..+++|+.+.+..
T Consensus 298 ------------~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 298 ------------AQLPANCIILVPP 310 (328)
T ss_dssp ------------GGSCTTCEEECCG
T ss_pred ------------hhccCceEEeCCH
Confidence 4566666666653
No 15
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.86 E-value=1.6e-21 Score=201.67 Aligned_cols=219 Identities=24% Similarity=0.315 Sum_probs=172.2
Q ss_pred CCceEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcCE
Q 038430 302 GGKVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQK 381 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~ 381 (677)
..+++.|+++++.+..+|..+..+++|++|++++ +.+..+|..++.+++|++|++++|.++.+|..++++++|++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~-----n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~ 154 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDA-----AGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRE 154 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEES-----SCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCC-----CCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCE
Confidence 5678899999999999998888899999999985 34457888899999999999999999999999999999999
Q ss_pred EEecCCCCccccCccccc---------ccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCccccccccc
Q 038430 382 LDIRGCRNLRELPTGIGK---------LKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKN 452 (677)
Q Consensus 382 L~L~~~~~l~~lp~~i~~---------l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~ 452 (677)
|++++|..++.+|..++. +++|++|++++| .+..+|..++++++|++|++.++.... ....
T Consensus 155 L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N~l~~------l~~~--- 224 (328)
T 4fcg_A 155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSPLSA------LGPA--- 224 (328)
T ss_dssp EEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESSCCCC------CCGG---
T ss_pred EECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchHhhcCCCCCCEEEccCCCCCc------Cchh---
Confidence 999998878888887664 889999999988 455888888888888888887665432 1122
Q ss_pred CCcCCcccccCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccc
Q 038430 453 FQLIRKCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDG 532 (677)
Q Consensus 453 l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (677)
+..+++|+.|++++|....
T Consensus 225 -------------------------l~~l~~L~~L~Ls~n~~~~------------------------------------ 243 (328)
T 4fcg_A 225 -------------------------IHHLPKLEELDLRGCTALR------------------------------------ 243 (328)
T ss_dssp -------------------------GGGCTTCCEEECTTCTTCC------------------------------------
T ss_pred -------------------------hccCCCCCEEECcCCcchh------------------------------------
Confidence 3344555556655541111
Q ss_pred hhhhhhcchhhHHHHhhhcCCCCCCcEEEEecCCCC-CCChhHhhccCCCeEEEeCCCCCCcCCC-CCCcc-cceeeccc
Q 038430 533 EYEERRRKNEKDEQLLEALQPPLNVEKLWILFNGGN-ILPKWLTSLTNLSDLKLVFCENCEQLPP-LGKLP-LEKLELCH 609 (677)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~lp~~~~~l~~L~~L~l~~c~~~~~l~~-l~~l~-L~~L~l~~ 609 (677)
.++..+..+++|+.|+|++|.+. .+|.++..+++|++|+|++|...+.+|. +++++ |+.+.+..
T Consensus 244 -------------~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 244 -------------NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp -------------BCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred -------------hhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 12234556788899999887654 5788888999999999999988888886 88888 88888874
No 16
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.86 E-value=2.1e-22 Score=232.62 Aligned_cols=92 Identities=18% Similarity=0.221 Sum_probs=74.0
Q ss_pred cCCCCCCcEEEEecCCCC-CCChhHhhccCCCeEEEeCCCCCCcCCC-CCCcc-cceeeccccccceEeCCccccCCCCC
Q 038430 551 LQPPLNVEKLWILFNGGN-ILPKWLTSLTNLSDLKLVFCENCEQLPP-LGKLP-LEKLELCHLKSVKRVGNEFLEIEESE 627 (677)
Q Consensus 551 l~~~~~L~~L~l~~~~~~-~lp~~~~~l~~L~~L~l~~c~~~~~l~~-l~~l~-L~~L~l~~~~~l~~i~~~~~~~~~~~ 627 (677)
+..+++|+.|+|++|.+. .+|..++.+++|+.|+|++|.....+|. ++.++ |+.|+|+++. +
T Consensus 628 ~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~-l-------------- 692 (768)
T 3rgz_A 628 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK-L-------------- 692 (768)
T ss_dssp CSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC-C--------------
T ss_pred hhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCc-c--------------
Confidence 444578999999999987 6899999999999999999966667885 88999 9999999832 3
Q ss_pred CCCCCCCCCCcccCCCccceeeeccccc-Cccccc
Q 038430 628 DDPSSSSSSSSVTAFPKVKSLEIKELEE-GNYRIT 661 (677)
Q Consensus 628 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~ 661 (677)
+|.+|.....+++|+.|++++++- ..+|..
T Consensus 693 ----~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 693 ----DGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp ----EECCCGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred ----cCcCChHHhCCCCCCEEECcCCcccccCCCc
Confidence 344444557899999999999987 767654
No 17
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.86 E-value=7.1e-22 Score=209.92 Aligned_cols=296 Identities=14% Similarity=0.072 Sum_probs=186.1
Q ss_pred CCceEEEEEEecCCCccccc-ccCCCcccEEEeCCCCCCCCCCccCC-cccCCCCCcCEEEecCccccccch-hhccCCC
Q 038430 302 GGKVRHLGLKFKGGASFPMS-IHGLNRLRTLLIDDESPPNSSLDKIP-ENVGKLMHLKYLNLSELHIERLPK-TLCELYN 378 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~l~~~~~~~lp-~~~~~l~~L~~L~Ls~~~i~~lp~-~i~~l~~ 378 (677)
..+++.+++.++.+..+|.. +..+++|++|++++ +.+..++ ..++.+++|++|++++|.++.+|+ .++++++
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~-----n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 118 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLND-----LQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 118 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTT-----SCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCC-----CcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCC
Confidence 46788999999998888854 67899999999985 3445554 468899999999999999987755 4889999
Q ss_pred cCEEEecCCCCccccCcc-cccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCC
Q 038430 379 LQKLDIRGCRNLRELPTG-IGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIR 457 (677)
Q Consensus 379 L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~ 457 (677)
|++|++++|. +..+|.. ++.+++|++|++++|......|..++.+++|++|++.++.... . .+..+++|+
T Consensus 119 L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-----~---~~~~l~~L~ 189 (390)
T 3o6n_A 119 LTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-----V---DLSLIPSLF 189 (390)
T ss_dssp CCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB-----C---CGGGCTTCS
T ss_pred CCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc-----c---ccccccccc
Confidence 9999999998 7788876 5889999999999995444445668899999999998876653 1 345566666
Q ss_pred cccccCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhh
Q 038430 458 KCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEER 537 (677)
Q Consensus 458 ~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (677)
.|.+++.. +. .+....+|+.|++++|.....+. .. ..........
T Consensus 190 ~L~l~~n~----l~-----~~~~~~~L~~L~l~~n~l~~~~~-------------~~---~~~L~~L~l~---------- 234 (390)
T 3o6n_A 190 HANVSYNL----LS-----TLAIPIAVEELDASHNSINVVRG-------------PV---NVELTILKLQ---------- 234 (390)
T ss_dssp EEECCSSC----CS-----EEECCSSCSEEECCSSCCCEEEC-------------CC---CSSCCEEECC----------
T ss_pred eeeccccc----cc-----ccCCCCcceEEECCCCeeeeccc-------------cc---cccccEEECC----------
Confidence 66665521 11 12233456666665541111000 00 0000000000
Q ss_pred hcchhhHHHHhhhcCCCCCCcEEEEecCCCCCC-ChhHhhccCCCeEEEeCCCCCCcCCC-CCCcc-cceeeccccccce
Q 038430 538 RRKNEKDEQLLEALQPPLNVEKLWILFNGGNIL-PKWLTSLTNLSDLKLVFCENCEQLPP-LGKLP-LEKLELCHLKSVK 614 (677)
Q Consensus 538 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~c~~~~~l~~-l~~l~-L~~L~l~~~~~l~ 614 (677)
..... ....+..+++|+.|++++|.+..+ |..+..+++|++|++++| .+..+|. .+.+| |+.|+++++ .++
T Consensus 235 -~n~l~---~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n-~l~ 308 (390)
T 3o6n_A 235 -HNNLT---DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLL 308 (390)
T ss_dssp -SSCCC---CCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSS-CCC
T ss_pred -CCCCc---ccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCC-cce
Confidence 00000 012344556777777777776644 556667777777777776 4444444 44567 777777764 454
Q ss_pred EeCCccccCCCCCCCCCCCCCCCcccCCCccceeeecccccCccccccCCccccCCCcccccC
Q 038430 615 RVGNEFLEIEESEDDPSSSSSSSSVTAFPKVKSLEIKELEEGNYRITRKENISIIPRLSSLRI 677 (677)
Q Consensus 615 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~i 677 (677)
.++..+ ..+++|+.|++++++-..++.. .+++|++|++
T Consensus 309 ~~~~~~-------------------~~l~~L~~L~L~~N~i~~~~~~------~~~~L~~L~l 346 (390)
T 3o6n_A 309 HVERNQ-------------------PQFDRLENLYLDHNSIVTLKLS------THHTLKNLTL 346 (390)
T ss_dssp CCGGGH-------------------HHHTTCSEEECCSSCCCCCCCC------TTCCCSEEEC
T ss_pred ecCccc-------------------cccCcCCEEECCCCccceeCch------hhccCCEEEc
Confidence 443221 3466677777766654333322 4666666654
No 18
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.86 E-value=8.4e-23 Score=234.89 Aligned_cols=179 Identities=17% Similarity=0.190 Sum_probs=144.4
Q ss_pred CCceEEEEEEecCCC-cccccccCCCcccEEEe-CCCCCC----------------------------------------
Q 038430 302 GGKVRHLGLKFKGGA-SFPMSIHGLNRLRTLLI-DDESPP---------------------------------------- 339 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~-~~p~~~~~l~~L~~L~l-~~~~l~---------------------------------------- 339 (677)
..++..|+++++.+. .+|..+..+++|++|++ ++|.+.
T Consensus 322 ~~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s 401 (876)
T 4ecn_A 322 NGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS 401 (876)
T ss_dssp TSCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence 468999999999884 68899999999999999 554210
Q ss_pred --------------------------------CCCCccCCcccCCCCCcCEEEecCccccc------------------c
Q 038430 340 --------------------------------NSSLDKIPENVGKLMHLKYLNLSELHIER------------------L 369 (677)
Q Consensus 340 --------------------------------~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~------------------l 369 (677)
++.+..+|..++++++|++|+|++|.++. +
T Consensus 402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 01222288889999999999999999987 9
Q ss_pred chhhc--cCCCcCEEEecCCCCccccCcccccccccceeecCccC-CCc-ccCCcCCCCC-------CCCccCceeeCCC
Q 038430 370 PKTLC--ELYNLQKLDIRGCRNLRELPTGIGKLKNMRSLLNGLTC-SLK-YMPIGISKLT-------SLRTLDKFAVGGG 438 (677)
Q Consensus 370 p~~i~--~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~-~~~-~~p~~i~~l~-------~L~~L~l~~~~~~ 438 (677)
|..++ ++++|++|+|++|.....+|..+++|++|++|++++|. ..+ .+|..++++. +|+.|++.++...
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence 99987 99999999999999889999999999999999999996 444 5887666655 9999999888765
Q ss_pred cCCCCccccc--ccccCCcCCcccccCccCCCChhHHHHhhccCCcccCceEEEee
Q 038430 439 VDGGSTCRLE--CLKNFQLIRKCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFE 492 (677)
Q Consensus 439 ~~~~~~~~~~--~L~~l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 492 (677)
. .+. .+.++++|+.|.+++..-. .++ .+..+++|+.|++++|
T Consensus 562 ~------ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-----~~~~L~~L~~L~Ls~N 605 (876)
T 4ecn_A 562 E------FPASASLQKMVKLGLLDCVHNKVR-HLE-----AFGTNVKLTDLKLDYN 605 (876)
T ss_dssp B------CCCHHHHTTCTTCCEEECTTSCCC-BCC-----CCCTTSEESEEECCSS
T ss_pred c------cCChhhhhcCCCCCEEECCCCCcc-cch-----hhcCCCcceEEECcCC
Confidence 3 333 6888999999999875322 222 5788899999999988
No 19
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.86 E-value=1.6e-21 Score=219.70 Aligned_cols=343 Identities=17% Similarity=0.124 Sum_probs=197.1
Q ss_pred cCCCceEEEEEEecCCCccc-ccccCCCcccEEEeCCCCCCCCCCccC-CcccCCCCCcCEEEecCcccccc-chhhccC
Q 038430 300 AFGGKVRHLGLKFKGGASFP-MSIHGLNRLRTLLIDDESPPNSSLDKI-PENVGKLMHLKYLNLSELHIERL-PKTLCEL 376 (677)
Q Consensus 300 ~~~~~l~~L~l~~~~~~~~p-~~~~~l~~L~~L~l~~~~l~~~~~~~l-p~~~~~l~~L~~L~Ls~~~i~~l-p~~i~~l 376 (677)
.++.+++.|+++++.+..++ ..|.++++|++|++++ +.+..+ |..|+++++|++|++++|.++.+ |..++++
T Consensus 29 ~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-----n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l 103 (606)
T 3vq2_A 29 DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSR-----CEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGL 103 (606)
T ss_dssp TSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT-----CCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTC
T ss_pred CCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCC-----CcccccCHHHhhchhhcCEeECCCCcccccChhhcCCc
Confidence 35688999999999998876 4889999999999996 334444 56689999999999999999876 6779999
Q ss_pred CCcCEEEecCCCCccccC-cccccccccceeecCccCCCc-ccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCC
Q 038430 377 YNLQKLDIRGCRNLRELP-TGIGKLKNMRSLLNGLTCSLK-YMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQ 454 (677)
Q Consensus 377 ~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~-~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~ 454 (677)
++|++|++++|. +..+| ..++++++|++|++++|.... .+|..++++++|++|++.++.... .....+..+.
T Consensus 104 ~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~-----~~~~~~~~l~ 177 (606)
T 3vq2_A 104 TSLENLVAVETK-LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT-----ITVNDLQFLR 177 (606)
T ss_dssp TTCCEEECTTSC-CCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCE-----ECTTTTHHHH
T ss_pred ccCCEEEccCCc-cccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCccee-----cChhhhhhhh
Confidence 999999999998 66555 679999999999999996443 578889999999999998876653 2222233333
Q ss_pred cCC----cccccCccCC-------------------CCh-hHHHHhhccCCcccCceEEEeecCCCCCcccccccccccC
Q 038430 455 LIR----KCGIEGLSNV-------------------SHL-DEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDE 510 (677)
Q Consensus 455 ~L~----~L~i~~~~~~-------------------~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 510 (677)
+|+ .|.+++..-. +.. .......+.++++|+.+.+........ ...
T Consensus 178 ~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~----------~~l 247 (606)
T 3vq2_A 178 ENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDE----------RNL 247 (606)
T ss_dssp HCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTS----------CCC
T ss_pred ccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccC----------Ccc
Confidence 222 3444432110 000 112222333444444444433210000 000
Q ss_pred CCCCCCCCCCcccccCCccccchhhhhhcchhhHHHHhhhcCCCCCCcEEEEecCCCCCCChhHhhccCCCeEEEeCCCC
Q 038430 511 GGEDEDEDGGYKEEKGGKVVDGEYEERRRKNEKDEQLLEALQPPLNVEKLWILFNGGNILPKWLTSLTNLSDLKLVFCEN 590 (677)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~ 590 (677)
...+.....+..... .........+....... .+..+++|+.|+++++.+..+| ++..+++|++|++++|.
T Consensus 248 ~~~~~~~~~~l~~l~------l~~l~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~- 318 (606)
T 3vq2_A 248 EIFEPSIMEGLCDVT------IDEFRLTYTNDFSDDIV-KFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQ- 318 (606)
T ss_dssp SCCCGGGGTTGGGSE------EEEEEECCCTTCCGGGG-SCGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCC-
T ss_pred cccChHHhhhhhhcc------Hhheecccccccccccc-ccccCCCCCEEEecCccchhhh-hccccccCCEEEccccc-
Confidence 000000000000000 00000000000111111 2555677888888888777777 66777788888888774
Q ss_pred CCcCCCCCCcc-cceeeccccccceEeCCccc---cCCCCCCCCCCCC--CCCcccCCCccceeeecccccCccccccCC
Q 038430 591 CEQLPPLGKLP-LEKLELCHLKSVKRVGNEFL---EIEESEDDPSSSS--SSSSVTAFPKVKSLEIKELEEGNYRITRKE 664 (677)
Q Consensus 591 ~~~l~~l~~l~-L~~L~l~~~~~l~~i~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 664 (677)
++.+|.+ .++ |+.|+++++..+..+....+ ..-...++.+++. .+.....+++|++|++++|.-..++ .
T Consensus 319 l~~lp~~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~----~ 393 (606)
T 3vq2_A 319 LKQFPTL-DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS----A 393 (606)
T ss_dssp CSSCCCC-CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEEC----C
T ss_pred CcccccC-CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccch----h
Confidence 3777766 777 77777777644443311000 0000001111111 1223345667777777766542222 2
Q ss_pred ccccCCCcccccC
Q 038430 665 NISIIPRLSSLRI 677 (677)
Q Consensus 665 ~~~~~p~L~~L~i 677 (677)
.+..+++|++|++
T Consensus 394 ~~~~l~~L~~L~l 406 (606)
T 3vq2_A 394 NFMGLEELQHLDF 406 (606)
T ss_dssp CCTTCTTCCEEEC
T ss_pred hccCCCCCCeeEC
Confidence 2335777777754
No 20
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.85 E-value=3.6e-21 Score=216.83 Aligned_cols=153 Identities=14% Similarity=0.047 Sum_probs=118.9
Q ss_pred cCCCceEEEEEEecCCCcc-cccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCcccccc-chhhccCC
Q 038430 300 AFGGKVRHLGLKFKGGASF-PMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERL-PKTLCELY 377 (677)
Q Consensus 300 ~~~~~l~~L~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~l-p~~i~~l~ 377 (677)
.++..++.|++++|.+..+ |..|.++++|++|++++ +......|..|+++++|++|++++|.++.+ |..+++++
T Consensus 30 ~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~----n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 105 (606)
T 3t6q_A 30 TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTR----CQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPK 105 (606)
T ss_dssp TSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTT----CCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCT
T ss_pred CCCCcCcEEEccCCccCcCChhHhccCccceEEECCC----CccceeChhhccCccccCeeeCCCCcccccChhhhcccc
Confidence 4577899999999999887 57899999999999996 333334467789999999999999998865 66799999
Q ss_pred CcCEEEecCCCCcccc-CcccccccccceeecCccCCCccc-CCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCc
Q 038430 378 NLQKLDIRGCRNLREL-PTGIGKLKNMRSLLNGLTCSLKYM-PIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQL 455 (677)
Q Consensus 378 ~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~-p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~ 455 (677)
+|++|++++|. +..+ |..++++++|++|++++|. +..+ ++.+..+++|++|++.++... ......++.+.+
T Consensus 106 ~L~~L~L~~n~-i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~-----~~~~~~~~~l~~ 178 (606)
T 3t6q_A 106 ALKHLFFIQTG-ISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIH-----YLSKEDMSSLQQ 178 (606)
T ss_dssp TCCEEECTTSC-CSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSCCC-----EECHHHHHTTTT
T ss_pred cccEeeccccC-cccCCcchhccCCcccEEECCCCc-ccccCcccccCCcccCEEEcccCccc-----ccChhhhhhhcc
Confidence 99999999998 6665 5678999999999999995 4443 234445899999999887665 333455666666
Q ss_pred CC--cccccC
Q 038430 456 IR--KCGIEG 463 (677)
Q Consensus 456 L~--~L~i~~ 463 (677)
|+ .|.+.+
T Consensus 179 L~~l~L~l~~ 188 (606)
T 3t6q_A 179 ATNLSLNLNG 188 (606)
T ss_dssp CCSEEEECTT
T ss_pred cceeEEecCC
Confidence 66 455554
No 21
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.85 E-value=7.2e-21 Score=207.83 Aligned_cols=282 Identities=17% Similarity=0.187 Sum_probs=218.0
Q ss_pred EEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccC-CcccCCCCCcCEEEecCcccccc-chhhccCCCcCEEEe
Q 038430 307 HLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKI-PENVGKLMHLKYLNLSELHIERL-PKTLCELYNLQKLDI 384 (677)
Q Consensus 307 ~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~l-p~~~~~l~~L~~L~Ls~~~i~~l-p~~i~~l~~L~~L~L 384 (677)
.+..++..+..+|..+. ++++.|++++ +.+..+ |..|..+++|++|+|++|.++.+ |..++++++|++|+|
T Consensus 15 ~v~c~~~~l~~ip~~~~--~~l~~L~L~~-----n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 87 (477)
T 2id5_A 15 AVLCHRKRFVAVPEGIP--TETRLLDLGK-----NRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGL 87 (477)
T ss_dssp EEECCSCCCSSCCSCCC--TTCSEEECCS-----SCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred EEEeCCCCcCcCCCCCC--CCCcEEECCC-----CccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEEC
Confidence 56667777888886553 6899999996 344555 56789999999999999999966 678999999999999
Q ss_pred cCCCCccccCcc-cccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccccC
Q 038430 385 RGCRNLRELPTG-IGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIEG 463 (677)
Q Consensus 385 ~~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~ 463 (677)
++|. +..+|.. +.++++|++|++++|......|..+..+++|++|++.++... ......+..+.+|+.|.+.+
T Consensus 88 ~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~-----~~~~~~~~~l~~L~~L~l~~ 161 (477)
T 2id5_A 88 RSNR-LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-----YISHRAFSGLNSLEQLTLEK 161 (477)
T ss_dssp CSSC-CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCC-----EECTTSSTTCTTCCEEEEES
T ss_pred CCCc-CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccc-----eeChhhccCCCCCCEEECCC
Confidence 9998 7788764 789999999999999766566778999999999999887765 33455678889999999988
Q ss_pred ccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcchhh
Q 038430 464 LSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKNEK 543 (677)
Q Consensus 464 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (677)
.. +.......+..+++|+.|+++.|....
T Consensus 162 n~----l~~~~~~~l~~l~~L~~L~l~~n~i~~----------------------------------------------- 190 (477)
T 2id5_A 162 CN----LTSIPTEALSHLHGLIVLRLRHLNINA----------------------------------------------- 190 (477)
T ss_dssp CC----CSSCCHHHHTTCTTCCEEEEESCCCCE-----------------------------------------------
T ss_pred Cc----CcccChhHhcccCCCcEEeCCCCcCcE-----------------------------------------------
Confidence 53 222233457788999999999872211
Q ss_pred HHHHhhhcCCCCCCcEEEEecCCCC-CCChhHhhccCCCeEEEeCCCCCCcCCC--CCCcc-cceeeccccccceEeCCc
Q 038430 544 DEQLLEALQPPLNVEKLWILFNGGN-ILPKWLTSLTNLSDLKLVFCENCEQLPP--LGKLP-LEKLELCHLKSVKRVGNE 619 (677)
Q Consensus 544 ~~~~~~~l~~~~~L~~L~l~~~~~~-~lp~~~~~l~~L~~L~l~~c~~~~~l~~--l~~l~-L~~L~l~~~~~l~~i~~~ 619 (677)
.....+..+++|+.|++++|... .+|.......+|++|++++| .+..+|. ++.++ |+.|++++ +.++.++..
T Consensus 191 --~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~ 266 (477)
T 2id5_A 191 --IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC-NLTAVPYLAVRHLVYLRFLNLSY-NPISTIEGS 266 (477)
T ss_dssp --ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESS-CCCSCCHHHHTTCTTCCEEECCS-SCCCEECTT
T ss_pred --eChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCC-cccccCHHHhcCccccCeeECCC-CcCCccChh
Confidence 01134567789999999998754 56766667779999999999 6777873 78999 99999998 457777554
Q ss_pred cccCCCCCCCCCCCCCCCcccCCCccceeeecccccCccccccCCccccCCCcccccC
Q 038430 620 FLEIEESEDDPSSSSSSSSVTAFPKVKSLEIKELEEGNYRITRKENISIIPRLSSLRI 677 (677)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~i 677 (677)
.+ ..+++|++|.++++.-..+.. ..+..+++|++|+|
T Consensus 267 ~~------------------~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L 303 (477)
T 2id5_A 267 ML------------------HELLRLQEIQLVGGQLAVVEP---YAFRGLNYLRVLNV 303 (477)
T ss_dssp SC------------------TTCTTCCEEECCSSCCSEECT---TTBTTCTTCCEEEC
T ss_pred hc------------------cccccCCEEECCCCccceECH---HHhcCcccCCEEEC
Confidence 43 578999999999986533321 23346889988875
No 22
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.85 E-value=1.1e-20 Score=205.48 Aligned_cols=293 Identities=16% Similarity=0.194 Sum_probs=151.8
Q ss_pred CCceEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcCE
Q 038430 302 GGKVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQK 381 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~ 381 (677)
..+++.|++++|.+..+|. +..+++|++|++++ +.+..++. ++.+++|++|++++|.++.+|+ +.++++|++
T Consensus 67 l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~-----n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~ 138 (466)
T 1o6v_A 67 LNNLTQINFSNNQLTDITP-LKNLTKLVDILMNN-----NQIADITP-LANLTNLTGLTLFNNQITDIDP-LKNLTNLNR 138 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS-----SCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSE
T ss_pred hcCCCEEECCCCccCCchh-hhccccCCEEECCC-----CccccChh-hcCCCCCCEEECCCCCCCCChH-HcCCCCCCE
Confidence 4566666666666666554 66666666666663 23333433 5666666666666666665554 666666666
Q ss_pred EEecCCCCccccCcccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccc
Q 038430 382 LDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGI 461 (677)
Q Consensus 382 L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i 461 (677)
|++++|. +..+|. ++.+++|++|+++++ ...++. ++++++|+.|++.++.... +..+..+++|+.|.+
T Consensus 139 L~l~~n~-l~~~~~-~~~l~~L~~L~l~~~--~~~~~~-~~~l~~L~~L~l~~n~l~~-------~~~l~~l~~L~~L~l 206 (466)
T 1o6v_A 139 LELSSNT-ISDISA-LSGLTSLQQLSFGNQ--VTDLKP-LANLTTLERLDISSNKVSD-------ISVLAKLTNLESLIA 206 (466)
T ss_dssp EEEEEEE-ECCCGG-GTTCTTCSEEEEEES--CCCCGG-GTTCTTCCEEECCSSCCCC-------CGGGGGCTTCSEEEC
T ss_pred EECCCCc-cCCChh-hccCCcccEeecCCc--ccCchh-hccCCCCCEEECcCCcCCC-------ChhhccCCCCCEEEe
Confidence 6666665 444443 555556665555432 222222 5555566666555554331 233455555555555
Q ss_pred cCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcch
Q 038430 462 EGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKN 541 (677)
Q Consensus 462 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (677)
+++.-.... .+..+++|+.|++++|..... + .+ ...............
T Consensus 207 ~~n~l~~~~------~~~~l~~L~~L~l~~n~l~~~-~--------------------~l-----~~l~~L~~L~l~~n~ 254 (466)
T 1o6v_A 207 TNNQISDIT------PLGILTNLDELSLNGNQLKDI-G--------------------TL-----ASLTNLTDLDLANNQ 254 (466)
T ss_dssp CSSCCCCCG------GGGGCTTCCEEECCSSCCCCC-G--------------------GG-----GGCTTCSEEECCSSC
T ss_pred cCCcccccc------cccccCCCCEEECCCCCcccc-h--------------------hh-----hcCCCCCEEECCCCc
Confidence 543211110 133455555555555411100 0 00 000000000000000
Q ss_pred hhHHHHhhhcCCCCCCcEEEEecCCCCCCChhHhhccCCCeEEEeCCCCCCcCCCCCCcc-cceeeccccccceEeCCcc
Q 038430 542 EKDEQLLEALQPPLNVEKLWILFNGGNILPKWLTSLTNLSDLKLVFCENCEQLPPLGKLP-LEKLELCHLKSVKRVGNEF 620 (677)
Q Consensus 542 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~~~~l~~l~~l~-L~~L~l~~~~~l~~i~~~~ 620 (677)
.. ....+..+++|+.|++++|.+..+|. +..+++|+.|++++| .+..++.++.++ |+.|++++| .++.+..
T Consensus 255 l~---~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~L~~n-~l~~~~~-- 326 (466)
T 1o6v_A 255 IS---NLAPLSGLTKLTELKLGANQISNISP-LAGLTALTNLELNEN-QLEDISPISNLKNLTYLTLYFN-NISDISP-- 326 (466)
T ss_dssp CC---CCGGGTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSS-CCSCCGGGGGCTTCSEEECCSS-CCSCCGG--
T ss_pred cc---cchhhhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCC-cccCchhhcCCCCCCEEECcCC-cCCCchh--
Confidence 00 00114445666666666666666554 556666777777666 455555566666 777777664 2333211
Q ss_pred ccCCCCCCCCCCCCCCCcccCCCccceeeecccccCccccccCCccccCCCcccccC
Q 038430 621 LEIEESEDDPSSSSSSSSVTAFPKVKSLEIKELEEGNYRITRKENISIIPRLSSLRI 677 (677)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~i 677 (677)
...+++|++|++++|.-...+ .+..+++|++|++
T Consensus 327 ------------------~~~l~~L~~L~l~~n~l~~~~-----~l~~l~~L~~L~l 360 (466)
T 1o6v_A 327 ------------------VSSLTKLQRLFFYNNKVSDVS-----SLANLTNINWLSA 360 (466)
T ss_dssp ------------------GGGCTTCCEEECCSSCCCCCG-----GGTTCTTCCEEEC
T ss_pred ------------------hccCccCCEeECCCCccCCch-----hhccCCCCCEEeC
Confidence 357889999999888653332 2236888888764
No 23
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.84 E-value=1.1e-20 Score=210.40 Aligned_cols=178 Identities=20% Similarity=0.233 Sum_probs=145.1
Q ss_pred CCCceEEEEEEecCCCcc-cccccCCCcccEEEeCCCCCCCCCCccC-CcccCCCCCcCEEEecCccccccchh-hccCC
Q 038430 301 FGGKVRHLGLKFKGGASF-PMSIHGLNRLRTLLIDDESPPNSSLDKI-PENVGKLMHLKYLNLSELHIERLPKT-LCELY 377 (677)
Q Consensus 301 ~~~~l~~L~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~l~~~~~~~l-p~~~~~l~~L~~L~Ls~~~i~~lp~~-i~~l~ 377 (677)
++..++.|++++|.+..+ |..+..+++|++|++++ +.+..+ |..++.+++|++|++++|.++.+|+. +++++
T Consensus 24 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-----n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 98 (549)
T 2z81_A 24 LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKS-----SRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLS 98 (549)
T ss_dssp CCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTT-----SCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCT
T ss_pred CCCCccEEECcCCccCccChhhhhcCCcccEEECCC-----CCcCccChhhccccccCCEEECCCCccCccCHHHhccCC
Confidence 457899999999999876 47899999999999996 334444 46789999999999999999988765 99999
Q ss_pred CcCEEEecCCCCcc--ccCcccccccccceeecCccCCCcccC-CcCCCCCCCCccCceeeCCCcCCCCcccccccccCC
Q 038430 378 NLQKLDIRGCRNLR--ELPTGIGKLKNMRSLLNGLTCSLKYMP-IGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQ 454 (677)
Q Consensus 378 ~L~~L~L~~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~ 454 (677)
+|++|++++|. +. ..|..++++++|++|++++|...+.+| ..++++++|++|++.++... ......++.++
T Consensus 99 ~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~-----~~~~~~l~~l~ 172 (549)
T 2z81_A 99 SLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR-----NYQSQSLKSIR 172 (549)
T ss_dssp TCCEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC-----EECTTTTTTCS
T ss_pred CCcEEECCCCc-ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccc-----ccChhhhhccc
Confidence 99999999998 55 456789999999999999997677777 57999999999999988765 34566788888
Q ss_pred cCCcccccCccCCCChhHHHHhhccCCcccCceEEEeec
Q 038430 455 LIRKCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFEV 493 (677)
Q Consensus 455 ~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 493 (677)
+|+.|.+..... ... ....+..+++|+.|+++.|.
T Consensus 173 ~L~~L~l~~n~~-~~~---~~~~~~~l~~L~~L~L~~n~ 207 (549)
T 2z81_A 173 DIHHLTLHLSES-AFL---LEIFADILSSVRYLELRDTN 207 (549)
T ss_dssp EEEEEEEECSBS-TTH---HHHHHHSTTTBSEEEEESCB
T ss_pred cCceEecccCcc-ccc---chhhHhhcccccEEEccCCc
Confidence 999998887542 222 22234568899999999883
No 24
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.84 E-value=2.3e-20 Score=193.66 Aligned_cols=288 Identities=17% Similarity=0.158 Sum_probs=197.7
Q ss_pred ceEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccC-CcccCCCCCcCEEEecCcccccc-chhhccCCCcCE
Q 038430 304 KVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKI-PENVGKLMHLKYLNLSELHIERL-PKTLCELYNLQK 381 (677)
Q Consensus 304 ~l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~l-p~~~~~l~~L~~L~Ls~~~i~~l-p~~i~~l~~L~~ 381 (677)
+++.+++.++.+..+|..+. ++|++|++++ +.+..+ |..++.+++|++|++++|.++.+ |..++++++|++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~-----n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 106 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEIS--PDTTLLDLQN-----NDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQK 106 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCC--TTCCEEECCS-----SCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCE
T ss_pred cCCEEECCCCCccccCCCCC--CCCeEEECCC-----CcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCE
Confidence 46677888888888886553 6788888885 334444 44678888888888888888865 667888888888
Q ss_pred EEecCCCCccccCcccccccccceeecCccCCCcccCC-cCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCccc
Q 038430 382 LDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPI-GISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCG 460 (677)
Q Consensus 382 L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~ 460 (677)
|++++|. +..+|..+. ++|++|++++|. +..+|. .++++++|++|++.++..... ......+..+ +|+.|.
T Consensus 107 L~L~~n~-l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~~~l-~L~~L~ 178 (332)
T 2ft3_A 107 LYISKNH-LVEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENS---GFEPGAFDGL-KLNYLR 178 (332)
T ss_dssp EECCSSC-CCSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGG---GSCTTSSCSC-CCSCCB
T ss_pred EECCCCc-CCccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCccccC---CCCcccccCC-ccCEEE
Confidence 8888887 778887665 788888888884 455554 478888888888887765420 1233445555 677777
Q ss_pred ccCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcc
Q 038430 461 IEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRK 540 (677)
Q Consensus 461 i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (677)
+++..- ..++. .+ .++|+.|++++|....
T Consensus 179 l~~n~l-~~l~~----~~--~~~L~~L~l~~n~i~~-------------------------------------------- 207 (332)
T 2ft3_A 179 ISEAKL-TGIPK----DL--PETLNELHLDHNKIQA-------------------------------------------- 207 (332)
T ss_dssp CCSSBC-SSCCS----SS--CSSCSCCBCCSSCCCC--------------------------------------------
T ss_pred CcCCCC-CccCc----cc--cCCCCEEECCCCcCCc--------------------------------------------
Confidence 776432 11111 11 2688888888772211
Q ss_pred hhhHHHHhhhcCCCCCCcEEEEecCCCCCCCh-hHhhccCCCeEEEeCCCCCCcCCC-CCCcc-cceeeccccccceEeC
Q 038430 541 NEKDEQLLEALQPPLNVEKLWILFNGGNILPK-WLTSLTNLSDLKLVFCENCEQLPP-LGKLP-LEKLELCHLKSVKRVG 617 (677)
Q Consensus 541 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~c~~~~~l~~-l~~l~-L~~L~l~~~~~l~~i~ 617 (677)
.....+..+++|+.|++++|.+..++. ++..+++|++|++++| .+..+|. ++.++ |+.|++++ +.++.++
T Consensus 208 -----~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~-N~l~~~~ 280 (332)
T 2ft3_A 208 -----IELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHT-NNITKVG 280 (332)
T ss_dssp -----CCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCS-SCCCBCC
T ss_pred -----cCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCC-cCeecChhhhcCccCCEEECCC-CCCCccC
Confidence 012345667889999999999887764 6889999999999988 6667775 88889 99999997 5677776
Q ss_pred CccccCCCCCCCCCCCCCCCcccCCCccceeeecccccCccccccCCccccCCCcccccC
Q 038430 618 NEFLEIEESEDDPSSSSSSSSVTAFPKVKSLEIKELEEGNYRITRKENISIIPRLSSLRI 677 (677)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~i 677 (677)
...+.... + ...+++|+.|.+.+++...+... +..+..+++|+.|++
T Consensus 281 ~~~~~~~~----------~--~~~~~~l~~L~l~~N~~~~~~~~-~~~~~~l~~L~~l~l 327 (332)
T 2ft3_A 281 VNDFCPVG----------F--GVKRAYYNGISLFNNPVPYWEVQ-PATFRCVTDRLAIQF 327 (332)
T ss_dssp TTSSSCSS----------C--CSSSCCBSEEECCSSSSCGGGSC-GGGGTTBCCSTTEEC
T ss_pred hhHccccc----------c--ccccccccceEeecCcccccccC-cccccccchhhhhhc
Confidence 54432210 0 12368899999998876323222 133335677777654
No 25
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.84 E-value=2.8e-20 Score=202.39 Aligned_cols=257 Identities=20% Similarity=0.210 Sum_probs=138.3
Q ss_pred CCceEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcCE
Q 038430 302 GGKVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQK 381 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~ 381 (677)
..+++.|+++++.+..++. +..+++|++|++++ +.+..+|. ++.+++|++|++++|.+..+|. ++++++|++
T Consensus 89 l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~-----n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~ 160 (466)
T 1o6v_A 89 LTKLVDILMNNNQIADITP-LANLTNLTGLTLFN-----NQITDIDP-LKNLTNLNRLELSSNTISDISA-LSGLTSLQQ 160 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS-----SCCCCCGG-GTTCTTCSEEEEEEEEECCCGG-GTTCTTCSE
T ss_pred cccCCEEECCCCccccChh-hcCCCCCCEEECCC-----CCCCCChH-HcCCCCCCEEECCCCccCCChh-hccCCcccE
Confidence 5688888888888887775 88888899998885 34455544 7888888888888888777653 666666666
Q ss_pred EEecCCCCccccCcccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccc
Q 038430 382 LDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGI 461 (677)
Q Consensus 382 L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i 461 (677)
|++++ . +..++. ++++++|++|++++|. +..++ .+..+++|++|++.++.... ...+..+++|+.|.+
T Consensus 161 L~l~~-~-~~~~~~-~~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~n~l~~-------~~~~~~l~~L~~L~l 228 (466)
T 1o6v_A 161 LSFGN-Q-VTDLKP-LANLTTLERLDISSNK-VSDIS-VLAKLTNLESLIATNNQISD-------ITPLGILTNLDELSL 228 (466)
T ss_dssp EEEEE-S-CCCCGG-GTTCTTCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSSCCCC-------CGGGGGCTTCCEEEC
T ss_pred eecCC-c-ccCchh-hccCCCCCEEECcCCc-CCCCh-hhccCCCCCEEEecCCcccc-------cccccccCCCCEEEC
Confidence 66642 2 333333 5555666666666553 33332 24555555555555444332 111344445555555
Q ss_pred cCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcch
Q 038430 462 EGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKN 541 (677)
Q Consensus 462 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (677)
+++.- ... ..+..+++|+.|++++|......+ .++. ......... ...
T Consensus 229 ~~n~l-~~~-----~~l~~l~~L~~L~l~~n~l~~~~~----------~~~l-----~~L~~L~l~-----------~n~ 276 (466)
T 1o6v_A 229 NGNQL-KDI-----GTLASLTNLTDLDLANNQISNLAP----------LSGL-----TKLTELKLG-----------ANQ 276 (466)
T ss_dssp CSSCC-CCC-----GGGGGCTTCSEEECCSSCCCCCGG----------GTTC-----TTCSEEECC-----------SSC
T ss_pred CCCCc-ccc-----hhhhcCCCCCEEECCCCccccchh----------hhcC-----CCCCEEECC-----------CCc
Confidence 44321 111 123344455555554441111000 0000 000000000 000
Q ss_pred hhHHHHhhhcCCCCCCcEEEEecCCCCCCChhHhhccCCCeEEEeCCCCCCcCCCCCCcc-cceeeccccccceEe
Q 038430 542 EKDEQLLEALQPPLNVEKLWILFNGGNILPKWLTSLTNLSDLKLVFCENCEQLPPLGKLP-LEKLELCHLKSVKRV 616 (677)
Q Consensus 542 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~~~~l~~l~~l~-L~~L~l~~~~~l~~i 616 (677)
.. . ...+..+++|+.|++++|.+..+|. +..+++|+.|++++| .+..++.++.++ |+.|++++| .++.+
T Consensus 277 l~--~-~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~l~~n-~l~~~ 346 (466)
T 1o6v_A 277 IS--N-ISPLAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFN-NISDISPVSSLTKLQRLFFYNN-KVSDV 346 (466)
T ss_dssp CC--C-CGGGTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSS-CCSCCGGGGGCTTCCEEECCSS-CCCCC
T ss_pred cC--c-cccccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCC-cCCCchhhccCccCCEeECCCC-ccCCc
Confidence 00 0 0114456677777777777666654 567777777777777 444445566677 777777764 34433
No 26
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.84 E-value=2e-20 Score=206.69 Aligned_cols=105 Identities=19% Similarity=0.190 Sum_probs=80.4
Q ss_pred CCCceEEEEEEecCCCccc-ccccCCCcccEEEeCCCCCCCCCCccC-CcccCCCCCcCEEEecCccccccchhhccCCC
Q 038430 301 FGGKVRHLGLKFKGGASFP-MSIHGLNRLRTLLIDDESPPNSSLDKI-PENVGKLMHLKYLNLSELHIERLPKTLCELYN 378 (677)
Q Consensus 301 ~~~~l~~L~l~~~~~~~~p-~~~~~l~~L~~L~l~~~~l~~~~~~~l-p~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~ 378 (677)
++.++++|++++|.+..++ ..+..+++|++|++++ +.+..+ |..++++++|++|++++|.++.+|.. .+++
T Consensus 19 ~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~-----n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~ 91 (520)
T 2z7x_B 19 LSQKTTILNISQNYISELWTSDILSLSKLRILIISH-----NRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVN 91 (520)
T ss_dssp CCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCS-----SCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCC
T ss_pred ccccccEEECCCCcccccChhhccccccccEEecCC-----CccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCC
Confidence 3578888888888887765 5788888888888885 334444 66788888888888888888888776 7888
Q ss_pred cCEEEecCCCCcc-ccCcccccccccceeecCccC
Q 038430 379 LQKLDIRGCRNLR-ELPTGIGKLKNMRSLLNGLTC 412 (677)
Q Consensus 379 L~~L~L~~~~~l~-~lp~~i~~l~~L~~L~l~~~~ 412 (677)
|++|++++|.... .+|..++++++|++|++++|.
T Consensus 92 L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~ 126 (520)
T 2z7x_B 92 LKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH 126 (520)
T ss_dssp CSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS
T ss_pred ccEEeccCCccccccchhhhccCCcceEEEecCcc
Confidence 8888888887333 356778888888888888774
No 27
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.84 E-value=2.6e-21 Score=217.10 Aligned_cols=260 Identities=14% Similarity=0.051 Sum_probs=158.2
Q ss_pred CCceEEEEEEecCCCcccc-cccCCCcccEEEeCCCCCCCCCCccCC-cccCCCCCcCEEEecCccccccchh-hccCCC
Q 038430 302 GGKVRHLGLKFKGGASFPM-SIHGLNRLRTLLIDDESPPNSSLDKIP-ENVGKLMHLKYLNLSELHIERLPKT-LCELYN 378 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~~~p~-~~~~l~~L~~L~l~~~~l~~~~~~~lp-~~~~~l~~L~~L~Ls~~~i~~lp~~-i~~l~~ 378 (677)
...++.+++.++.+..+|. .+..+++|++|++++ +.+..+| ..++.+++|++|+|++|.++.+|+. ++++++
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~-----n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 124 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLND-----LQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 124 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTT-----SCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCC-----CCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCC
Confidence 3567788888888877774 367788899998885 3344444 4678888899999998888877654 688889
Q ss_pred cCEEEecCCCCccccCcc-cccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCC
Q 038430 379 LQKLDIRGCRNLRELPTG-IGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIR 457 (677)
Q Consensus 379 L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~ 457 (677)
|++|+|++|. +..+|.. ++.+++|++|++++|......|..++.+++|++|++.++.... . .+..+++|+
T Consensus 125 L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-----~---~~~~l~~L~ 195 (597)
T 3oja_B 125 LTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-----V---DLSLIPSLF 195 (597)
T ss_dssp CCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB-----C---CGGGCTTCS
T ss_pred CCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC-----c---Chhhhhhhh
Confidence 9999998887 7777765 4788889999998885544445568888888888888776553 1 244556666
Q ss_pred cccccCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhh
Q 038430 458 KCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEER 537 (677)
Q Consensus 458 ~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (677)
.|.+++.. +. .+....+|+.|++++|.......... ..... ...
T Consensus 196 ~L~l~~n~----l~-----~l~~~~~L~~L~ls~n~l~~~~~~~~----------------~~L~~-----------L~L 239 (597)
T 3oja_B 196 HANVSYNL----LS-----TLAIPIAVEELDASHNSINVVRGPVN----------------VELTI-----------LKL 239 (597)
T ss_dssp EEECCSSC----CS-----EEECCTTCSEEECCSSCCCEEECSCC----------------SCCCE-----------EEC
T ss_pred hhhcccCc----cc-----cccCCchhheeeccCCcccccccccC----------------CCCCE-----------EEC
Confidence 66665421 11 12334456666665551111000000 00000 000
Q ss_pred hcchhhHHHHhhhcCCCCCCcEEEEecCCCCCC-ChhHhhccCCCeEEEeCCCCCCcCCC-CCCcc-cceeeccccccce
Q 038430 538 RRKNEKDEQLLEALQPPLNVEKLWILFNGGNIL-PKWLTSLTNLSDLKLVFCENCEQLPP-LGKLP-LEKLELCHLKSVK 614 (677)
Q Consensus 538 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~c~~~~~l~~-l~~l~-L~~L~l~~~~~l~ 614 (677)
...... ....+..+++|+.|+|++|.+..+ |..++.+++|+.|+|++| .+..+|. .+.+| |+.|+|++| .+.
T Consensus 240 ~~n~l~---~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N-~l~ 314 (597)
T 3oja_B 240 QHNNLT---DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLL 314 (597)
T ss_dssp CSSCCC---CCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSS-CCC
T ss_pred CCCCCC---CChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCC-CCCCCCcccccCCCCcEEECCCC-CCC
Confidence 000000 012344456677777777666543 556666777777777666 4444444 34566 777777663 344
Q ss_pred Ee
Q 038430 615 RV 616 (677)
Q Consensus 615 ~i 616 (677)
.+
T Consensus 315 ~i 316 (597)
T 3oja_B 315 HV 316 (597)
T ss_dssp CC
T ss_pred cc
Confidence 44
No 28
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.84 E-value=4.3e-20 Score=199.52 Aligned_cols=161 Identities=16% Similarity=0.120 Sum_probs=107.9
Q ss_pred CCceEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcCE
Q 038430 302 GGKVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQK 381 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~ 381 (677)
..+++.|+++++.+..+| .+..+++|++|++++| .+..+| ++.+++|++|++++|.++.+| ++++++|++
T Consensus 41 l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n-----~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~ 110 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSN-----NITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTY 110 (457)
T ss_dssp HTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSS-----CCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCE
T ss_pred cCCCCEEEccCCCcccCh-hhcccCCCCEEEccCC-----cCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCE
Confidence 456778888888777776 6777788888888753 344444 677778888888888877764 777788888
Q ss_pred EEecCCCCccccCcccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccc
Q 038430 382 LDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGI 461 (677)
Q Consensus 382 L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i 461 (677)
|++++|. +..+| ++.+++|++|++++|. +..+| ++.+++|++|++..+.... .+ .+..+++|+.|.+
T Consensus 111 L~L~~N~-l~~l~--~~~l~~L~~L~l~~N~-l~~l~--l~~l~~L~~L~l~~n~~~~------~~-~~~~l~~L~~L~l 177 (457)
T 3bz5_A 111 LNCDTNK-LTKLD--VSQNPLLTYLNCARNT-LTEID--VSHNTQLTELDCHLNKKIT------KL-DVTPQTQLTTLDC 177 (457)
T ss_dssp EECCSSC-CSCCC--CTTCTTCCEEECTTSC-CSCCC--CTTCTTCCEEECTTCSCCC------CC-CCTTCTTCCEEEC
T ss_pred EECCCCc-CCeec--CCCCCcCCEEECCCCc-cceec--cccCCcCCEEECCCCCccc------cc-ccccCCcCCEEEC
Confidence 8888776 66665 7777888888888774 44443 6677777777776664321 11 3556667777777
Q ss_pred cCccCCCChhHHHHhhccCCcccCceEEEee
Q 038430 462 EGLSNVSHLDEAERLELKNMENLLHLYLWFE 492 (677)
Q Consensus 462 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 492 (677)
++..- ..+ .+..+++|+.|++++|
T Consensus 178 s~n~l-~~l------~l~~l~~L~~L~l~~N 201 (457)
T 3bz5_A 178 SFNKI-TEL------DVSQNKLLNRLNCDTN 201 (457)
T ss_dssp CSSCC-CCC------CCTTCTTCCEEECCSS
T ss_pred CCCcc-cee------ccccCCCCCEEECcCC
Confidence 66421 111 1556677777777766
No 29
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.84 E-value=1.7e-20 Score=194.48 Aligned_cols=289 Identities=15% Similarity=0.153 Sum_probs=195.5
Q ss_pred ceEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCc-ccCCCCCcCEEEecCcccccc-chhhccCCCcCE
Q 038430 304 KVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPE-NVGKLMHLKYLNLSELHIERL-PKTLCELYNLQK 381 (677)
Q Consensus 304 ~l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~-~~~~l~~L~~L~Ls~~~i~~l-p~~i~~l~~L~~ 381 (677)
+++.+++.++.+..+|..+. +++++|++++ +.+..+|. .++.+++|++|++++|.++.+ |..++++++|++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~-----n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQN-----NKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLER 104 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC--TTCCEEECCS-----SCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCE
T ss_pred CCeEEEecCCCccccCccCC--CCCeEEECCC-----CcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCE
Confidence 45567777777777775543 5788888875 33445543 578888888888888888766 667888888888
Q ss_pred EEecCCCCccccCcccccccccceeecCccCCCcccC-CcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCccc
Q 038430 382 LDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMP-IGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCG 460 (677)
Q Consensus 382 L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~ 460 (677)
|++++|. +..+|..+. ++|++|++++|. +..++ ..++++++|++|++.++..... ......+..+++|+.|.
T Consensus 105 L~Ls~n~-l~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~~~l~~L~~L~ 177 (330)
T 1xku_A 105 LYLSKNQ-LKELPEKMP--KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSS---GIENGAFQGMKKLSYIR 177 (330)
T ss_dssp EECCSSC-CSBCCSSCC--TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGG---GBCTTGGGGCTTCCEEE
T ss_pred EECCCCc-CCccChhhc--ccccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCCcc---CcChhhccCCCCcCEEE
Confidence 8888887 777777555 688888888884 44444 4477888888888877665420 23445667777888887
Q ss_pred ccCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcc
Q 038430 461 IEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRK 540 (677)
Q Consensus 461 i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (677)
+++..- ..++. .+ .++|+.|++++|....
T Consensus 178 l~~n~l-~~l~~----~~--~~~L~~L~l~~n~l~~-------------------------------------------- 206 (330)
T 1xku_A 178 IADTNI-TTIPQ----GL--PPSLTELHLDGNKITK-------------------------------------------- 206 (330)
T ss_dssp CCSSCC-CSCCS----SC--CTTCSEEECTTSCCCE--------------------------------------------
T ss_pred CCCCcc-ccCCc----cc--cccCCEEECCCCcCCc--------------------------------------------
Confidence 776432 11111 11 2788888888772111
Q ss_pred hhhHHHHhhhcCCCCCCcEEEEecCCCCCCCh-hHhhccCCCeEEEeCCCCCCcCCC-CCCcc-cceeeccccccceEeC
Q 038430 541 NEKDEQLLEALQPPLNVEKLWILFNGGNILPK-WLTSLTNLSDLKLVFCENCEQLPP-LGKLP-LEKLELCHLKSVKRVG 617 (677)
Q Consensus 541 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~c~~~~~l~~-l~~l~-L~~L~l~~~~~l~~i~ 617 (677)
.....+..+++|+.|++++|.+..++. ++..+++|++|++++| .+..+|. +..++ |++|++++ +.++.++
T Consensus 207 -----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~-N~i~~~~ 279 (330)
T 1xku_A 207 -----VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHN-NNISAIG 279 (330)
T ss_dssp -----ECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCS-SCCCCCC
T ss_pred -----cCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCC-CcCCccC
Confidence 112345677899999999999887654 6889999999999999 6667775 88889 99999997 5577776
Q ss_pred CccccCCCCCCCCCCCCCCCcccCCCccceeeecccccCccccccCCccccCCCcccccC
Q 038430 618 NEFLEIEESEDDPSSSSSSSSVTAFPKVKSLEIKELEEGNYRITRKENISIIPRLSSLRI 677 (677)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~i 677 (677)
...+... . ....+++|+.|.+.++|...|.... ..+..+++|+.+++
T Consensus 280 ~~~f~~~----------~--~~~~~~~l~~l~l~~N~~~~~~i~~-~~f~~~~~l~~l~L 326 (330)
T 1xku_A 280 SNDFCPP----------G--YNTKKASYSGVSLFSNPVQYWEIQP-STFRCVYVRAAVQL 326 (330)
T ss_dssp TTSSSCS----------S--CCTTSCCCSEEECCSSSSCGGGSCG-GGGTTCCCGGGEEC
T ss_pred hhhcCCc----------c--cccccccccceEeecCcccccccCc-cccccccceeEEEe
Confidence 5544221 0 0134688999999988864443321 23334566666653
No 30
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.83 E-value=1.4e-20 Score=212.12 Aligned_cols=244 Identities=20% Similarity=0.193 Sum_probs=179.5
Q ss_pred ceEEEEEEecCCCccc-ccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCcccccc-chhhccCCCcCE
Q 038430 304 KVRHLGLKFKGGASFP-MSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERL-PKTLCELYNLQK 381 (677)
Q Consensus 304 ~l~~L~l~~~~~~~~p-~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~l-p~~i~~l~~L~~ 381 (677)
.++.+++.++.+..++ ..+..+++|++|++++ +.+..+|..++.+++|++|++++|.++.+ |..+.++++|++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-----n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 329 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTA-----THLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTH 329 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTT-----SCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSE
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccC-----CccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCE
Confidence 7899999999998876 4588999999999995 45668898899999999999999999866 557999999999
Q ss_pred EEecCCCCccccCcc-cccccccceeecCccCCCccc--CCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCc
Q 038430 382 LDIRGCRNLRELPTG-IGKLKNMRSLLNGLTCSLKYM--PIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRK 458 (677)
Q Consensus 382 L~L~~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~--p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~ 458 (677)
|++++|.....+|.. ++.+++|++|++++|...... |..++.+++|++|++.++... ......+..+++|+.
T Consensus 330 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-----~~~~~~~~~l~~L~~ 404 (606)
T 3t6q_A 330 LSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL-----SLKTEAFKECPQLEL 404 (606)
T ss_dssp EECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCE-----EECTTTTTTCTTCSE
T ss_pred EECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCC-----cCCHHHhcCCccCCe
Confidence 999999855577664 889999999999999544333 667899999999999887655 334566778888999
Q ss_pred ccccCccCCCChhHHH-HhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhh
Q 038430 459 CGIEGLSNVSHLDEAE-RLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEER 537 (677)
Q Consensus 459 L~i~~~~~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (677)
|.+++... .... ...+..+++|+.|++++|....
T Consensus 405 L~l~~n~l----~~~~~~~~~~~l~~L~~L~l~~n~l~~----------------------------------------- 439 (606)
T 3t6q_A 405 LDLAFTRL----KVKDAQSPFQNLHLLKVLNLSHSLLDI----------------------------------------- 439 (606)
T ss_dssp EECTTCCE----ECCTTCCTTTTCTTCCEEECTTCCCBT-----------------------------------------
T ss_pred EECCCCcC----CCcccchhhhCcccCCEEECCCCccCC-----------------------------------------
Confidence 88877432 1111 1236778899999998772221
Q ss_pred hcchhhHHHHhhhcCCCCCCcEEEEecCCCCC----CChhHhhccCCCeEEEeCCCCCCcCC-CCCCcc-cceeecccc
Q 038430 538 RRKNEKDEQLLEALQPPLNVEKLWILFNGGNI----LPKWLTSLTNLSDLKLVFCENCEQLP-PLGKLP-LEKLELCHL 610 (677)
Q Consensus 538 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~----lp~~~~~l~~L~~L~l~~c~~~~~l~-~l~~l~-L~~L~l~~~ 610 (677)
.....+..+++|++|++++|.+.. .+.++..+++|++|++++|......| .++.++ |+.|+++++
T Consensus 440 --------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 510 (606)
T 3t6q_A 440 --------SSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN 510 (606)
T ss_dssp --------TCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred --------cCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCC
Confidence 112334556777777777776643 23456677777777777773333323 266777 777777764
No 31
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.83 E-value=9.3e-20 Score=189.03 Aligned_cols=264 Identities=18% Similarity=0.156 Sum_probs=198.1
Q ss_pred CCCceEEEEEEecCCCccc-ccccCCCcccEEEeCCCCCCCCCCccC-CcccCCCCCcCEEEecCccccccchhhccCCC
Q 038430 301 FGGKVRHLGLKFKGGASFP-MSIHGLNRLRTLLIDDESPPNSSLDKI-PENVGKLMHLKYLNLSELHIERLPKTLCELYN 378 (677)
Q Consensus 301 ~~~~l~~L~l~~~~~~~~p-~~~~~l~~L~~L~l~~~~l~~~~~~~l-p~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~ 378 (677)
++..++.|++++|.+..++ ..+..+++|++|++++ +.+..+ |..++.+++|++|++++|.++.+|..+. ++
T Consensus 52 ~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~-----n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~ 124 (332)
T 2ft3_A 52 ISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVN-----NKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SS 124 (332)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-----SCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TT
T ss_pred CCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCC-----CccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--cc
Confidence 4678999999999998875 5899999999999996 334444 6779999999999999999999988765 89
Q ss_pred cCEEEecCCCCccccCc-ccccccccceeecCccCCC--cccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCc
Q 038430 379 LQKLDIRGCRNLRELPT-GIGKLKNMRSLLNGLTCSL--KYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQL 455 (677)
Q Consensus 379 L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~--~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~ 455 (677)
|++|++++|. +..+|. .+..+++|++|++++|... ...|..+..+ +|+.|++.++.....+ ..+ .++
T Consensus 125 L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~------~~~--~~~ 194 (332)
T 2ft3_A 125 LVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIP------KDL--PET 194 (332)
T ss_dssp CCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCC------SSS--CSS
T ss_pred CCEEECCCCc-cCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccC------ccc--cCC
Confidence 9999999998 777765 5899999999999999542 2456667777 9999999888765422 111 157
Q ss_pred CCcccccCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhh
Q 038430 456 IRKCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYE 535 (677)
Q Consensus 456 L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (677)
|+.|.+++.. +.......+..+++|+.|++++|.....
T Consensus 195 L~~L~l~~n~----i~~~~~~~l~~l~~L~~L~L~~N~l~~~-------------------------------------- 232 (332)
T 2ft3_A 195 LNELHLDHNK----IQAIELEDLLRYSKLYRLGLGHNQIRMI-------------------------------------- 232 (332)
T ss_dssp CSCCBCCSSC----CCCCCTTSSTTCTTCSCCBCCSSCCCCC--------------------------------------
T ss_pred CCEEECCCCc----CCccCHHHhcCCCCCCEEECCCCcCCcC--------------------------------------
Confidence 8888887742 2222334577889999999998822221
Q ss_pred hhhcchhhHHHHhhhcCCCCCCcEEEEecCCCCCCChhHhhccCCCeEEEeCCCCCCcCCC--CCC------cc-cceee
Q 038430 536 ERRRKNEKDEQLLEALQPPLNVEKLWILFNGGNILPKWLTSLTNLSDLKLVFCENCEQLPP--LGK------LP-LEKLE 606 (677)
Q Consensus 536 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~~~~l~~--l~~------l~-L~~L~ 606 (677)
....+..+++|+.|++++|.+..+|.++..+++|++|++++| .+..++. +.. .+ |+.|+
T Consensus 233 -----------~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~ 300 (332)
T 2ft3_A 233 -----------ENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGIS 300 (332)
T ss_dssp -----------CTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEE
T ss_pred -----------ChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCC-CCCccChhHccccccccccccccceE
Confidence 112345678999999999999999999999999999999998 5666653 222 46 89999
Q ss_pred ccccccce--EeCCccccCCCCCCCCCCCCCCCcccCCCccceeeecccc
Q 038430 607 LCHLKSVK--RVGNEFLEIEESEDDPSSSSSSSSVTAFPKVKSLEIKELE 654 (677)
Q Consensus 607 l~~~~~l~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 654 (677)
+.+++ +. .+.... ...+++|+.|.++++.
T Consensus 301 l~~N~-~~~~~~~~~~------------------~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 301 LFNNP-VPYWEVQPAT------------------FRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CCSSS-SCGGGSCGGG------------------GTTBCCSTTEEC----
T ss_pred eecCc-ccccccCccc------------------ccccchhhhhhccccc
Confidence 99855 32 222211 3567888999888764
No 32
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.83 E-value=3.1e-20 Score=201.50 Aligned_cols=146 Identities=14% Similarity=0.062 Sum_probs=115.2
Q ss_pred EEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccC-CcccCCCCCcCEEEecCcccc-cc-chhhccCCCcCEEE
Q 038430 307 HLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKI-PENVGKLMHLKYLNLSELHIE-RL-PKTLCELYNLQKLD 383 (677)
Q Consensus 307 ~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~l-p~~~~~l~~L~~L~Ls~~~i~-~l-p~~i~~l~~L~~L~ 383 (677)
.+...++++..+|. + .++|++|++++ +.+..+ |..++++++|++|++++|.+. .+ |..+.++++|++|+
T Consensus 14 ~~~c~~~~l~~lp~-l--~~~l~~L~Ls~-----n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~ 85 (455)
T 3v47_A 14 NAICINRGLHQVPE-L--PAHVNYVDLSL-----NSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILK 85 (455)
T ss_dssp EEECCSSCCSSCCC-C--CTTCCEEECCS-----SCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEE
T ss_pred ccCcCCCCcccCCC-C--CCccCEEEecC-----CccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEe
Confidence 45666677788886 3 37899999996 334444 677999999999999999986 55 45699999999999
Q ss_pred ecCCCCccccCcccccccccceeecCccCCCcccCCc--CCCCCCCCccCceeeCCCcCCCCcccccc-cccCCcCCccc
Q 038430 384 IRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIG--ISKLTSLRTLDKFAVGGGVDGGSTCRLEC-LKNFQLIRKCG 460 (677)
Q Consensus 384 L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~--i~~l~~L~~L~l~~~~~~~~~~~~~~~~~-L~~l~~L~~L~ 460 (677)
+++|......|..++++++|++|++++|...+.+|.. ++.+++|++|++.++.... ..... +..+++|+.|+
T Consensus 86 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~-----~~~~~~~~~l~~L~~L~ 160 (455)
T 3v47_A 86 LDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKK-----IQPASFFLNMRRFHVLD 160 (455)
T ss_dssp CTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCS-----CCCCGGGGGCTTCCEEE
T ss_pred CCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCc-----cCcccccCCCCcccEEe
Confidence 9999944455888999999999999999655445544 8999999999999887763 22233 78888999998
Q ss_pred ccCcc
Q 038430 461 IEGLS 465 (677)
Q Consensus 461 i~~~~ 465 (677)
+++..
T Consensus 161 L~~n~ 165 (455)
T 3v47_A 161 LTFNK 165 (455)
T ss_dssp CTTCC
T ss_pred CCCCc
Confidence 88753
No 33
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.82 E-value=1.6e-20 Score=199.45 Aligned_cols=263 Identities=14% Similarity=0.094 Sum_probs=184.6
Q ss_pred CCceEEEEEEecCCCccc-ccccCCCcccEEEeCCCCCCCCCCccC-CcccCCCCCcCEEEecCccccccchh-hccCCC
Q 038430 302 GGKVRHLGLKFKGGASFP-MSIHGLNRLRTLLIDDESPPNSSLDKI-PENVGKLMHLKYLNLSELHIERLPKT-LCELYN 378 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~~~p-~~~~~l~~L~~L~l~~~~l~~~~~~~l-p~~~~~l~~L~~L~Ls~~~i~~lp~~-i~~l~~ 378 (677)
..+++.|++.++.+..++ ..+..+++|++|++++ +.+..+ |..++.+++|++|++++|.++.+|.. ++++++
T Consensus 68 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~-----n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~ 142 (390)
T 3o6n_A 68 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF-----NAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPK 142 (390)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCS-----SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cccCcEEECCCCcccccChhhccCCCCcCEEECCC-----CCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCC
Confidence 467899999999888776 4788899999999986 334444 45578899999999999999988876 588999
Q ss_pred cCEEEecCCCCcccc-CcccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccc--------
Q 038430 379 LQKLDIRGCRNLREL-PTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLEC-------- 449 (677)
Q Consensus 379 L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~-------- 449 (677)
|++|++++|. +..+ |..++.+++|++|++++|. +..++ ++.+++|+.|++..+..... .....
T Consensus 143 L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~--~~~l~~L~~L~l~~n~l~~~----~~~~~L~~L~l~~ 214 (390)
T 3o6n_A 143 LTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNR-LTHVD--LSLIPSLFHANVSYNLLSTL----AIPIAVEELDASH 214 (390)
T ss_dssp CCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSC-CSBCC--GGGCTTCSEEECCSSCCSEE----ECCSSCSEEECCS
T ss_pred CcEEECCCCc-cCccChhhccCCCCCCEEECCCCc-CCccc--cccccccceeeccccccccc----CCCCcceEEECCC
Confidence 9999999988 5555 4568889999999999884 44443 45566666666554433210 00000
Q ss_pred -------cccCCcCCcccccCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcc
Q 038430 450 -------LKNFQLIRKCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYK 522 (677)
Q Consensus 450 -------L~~l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (677)
.....+|+.|.+.+..-. .. ..+..+++|+.|++++|....
T Consensus 215 n~l~~~~~~~~~~L~~L~l~~n~l~-~~-----~~l~~l~~L~~L~Ls~n~l~~-------------------------- 262 (390)
T 3o6n_A 215 NSINVVRGPVNVELTILKLQHNNLT-DT-----AWLLNYPGLVEVDLSYNELEK-------------------------- 262 (390)
T ss_dssp SCCCEEECCCCSSCCEEECCSSCCC-CC-----GGGGGCTTCSEEECCSSCCCE--------------------------
T ss_pred CeeeeccccccccccEEECCCCCCc-cc-----HHHcCCCCccEEECCCCcCCC--------------------------
Confidence 011235666666553221 11 345667778888887761111
Q ss_pred cccCCccccchhhhhhcchhhHHHHhhhcCCCCCCcEEEEecCCCCCCChhHhhccCCCeEEEeCCCCCCcCCC-CCCcc
Q 038430 523 EEKGGKVVDGEYEERRRKNEKDEQLLEALQPPLNVEKLWILFNGGNILPKWLTSLTNLSDLKLVFCENCEQLPP-LGKLP 601 (677)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~~~~l~~-l~~l~ 601 (677)
..+..+..+++|+.|++++|.+..+|..+..+++|++|++++| .+..+|. ++.++
T Consensus 263 -----------------------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~ 318 (390)
T 3o6n_A 263 -----------------------IMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFD 318 (390)
T ss_dssp -----------------------EESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHT
T ss_pred -----------------------cChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCC-cceecCccccccC
Confidence 1234566778999999999998888877778899999999998 5656664 67788
Q ss_pred -cceeeccccccceEeCCccccCCCCCCCCCCCCCCCcccCCCccceeeeccccc
Q 038430 602 -LEKLELCHLKSVKRVGNEFLEIEESEDDPSSSSSSSSVTAFPKVKSLEIKELEE 655 (677)
Q Consensus 602 -L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 655 (677)
|+.|+++++ .++.++ ...+++|+.|++++++-
T Consensus 319 ~L~~L~L~~N-~i~~~~---------------------~~~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 319 RLENLYLDHN-SIVTLK---------------------LSTHHTLKNLTLSHNDW 351 (390)
T ss_dssp TCSEEECCSS-CCCCCC---------------------CCTTCCCSEEECCSSCE
T ss_pred cCCEEECCCC-ccceeC---------------------chhhccCCEEEcCCCCc
Confidence 999999884 354442 25788999999988764
No 34
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.82 E-value=3e-20 Score=216.86 Aligned_cols=321 Identities=15% Similarity=0.064 Sum_probs=199.4
Q ss_pred CCCceEEEEEEecCCCcc-cccccCCCcccEEEeCCCCCCCCCCccC-CcccCCCCCcCEEEecCcccccc-chhhccCC
Q 038430 301 FGGKVRHLGLKFKGGASF-PMSIHGLNRLRTLLIDDESPPNSSLDKI-PENVGKLMHLKYLNLSELHIERL-PKTLCELY 377 (677)
Q Consensus 301 ~~~~l~~L~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~l~~~~~~~l-p~~~~~l~~L~~L~Ls~~~i~~l-p~~i~~l~ 377 (677)
.+.+++.|++++|.+..+ |..|.++++|++|++++ +.....+ |..|+++++|++|+|++|.+..+ |..+++++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~----n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~ 97 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGS----QYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLF 97 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECT----TCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCS
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCC----CCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCc
Confidence 688999999999999776 57899999999999997 4455666 67789999999999999999866 77899999
Q ss_pred CcCEEEecCCCCccccCcc--cccccccceeecCccCCCcccC-CcCCCCCCCCccCceeeCCCcCCCCcccccccccC-
Q 038430 378 NLQKLDIRGCRNLRELPTG--IGKLKNMRSLLNGLTCSLKYMP-IGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNF- 453 (677)
Q Consensus 378 ~L~~L~L~~~~~l~~lp~~--i~~l~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l- 453 (677)
+|++|+|++|.....+|.. ++++++|++|++++|......| ..++++++|++|++.++.... .....+..+
T Consensus 98 ~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~-----~~~~~l~~l~ 172 (844)
T 3j0a_A 98 HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL-----VCEHELEPLQ 172 (844)
T ss_dssp SCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC-----CCSGGGHHHH
T ss_pred ccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe-----eCHHHccccc
Confidence 9999999999844556665 8999999999999996544333 468999999999999877652 234455555
Q ss_pred -CcCCcccccCccCCCChhHHHHhhccCCc------ccCceEEEeecCCCCCcccc-ccccccc-----CCC------CC
Q 038430 454 -QLIRKCGIEGLSNVSHLDEAERLELKNME------NLLHLYLWFEVVDREDEDWE-DEEENED-----EGG------ED 514 (677)
Q Consensus 454 -~~L~~L~i~~~~~~~~~~~~~~~~l~~~~------~L~~L~l~~~~~~~~~~~~~-~~~~~~~-----~~~------~~ 514 (677)
.+|+.|.++...-... ....+..+. .|+.|+++.|......+.+. ....... ... ..
T Consensus 173 ~~~L~~L~L~~n~l~~~----~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~ 248 (844)
T 3j0a_A 173 GKTLSFFSLAANSLYSR----VSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFG 248 (844)
T ss_dssp HCSSCCCEECCSBSCCC----CCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSS
T ss_pred CCccceEECCCCccccc----cccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccccc
Confidence 6788888876432221 112233333 48999998773322211111 0000000 000 00
Q ss_pred CCCCCCcccccCCcc--ccchhhhhhcchhhHHHHhhhcCCCCCCcEEEEecCCCCCC-ChhHhhccCCCeEEEeCCCCC
Q 038430 515 EDEDGGYKEEKGGKV--VDGEYEERRRKNEKDEQLLEALQPPLNVEKLWILFNGGNIL-PKWLTSLTNLSDLKLVFCENC 591 (677)
Q Consensus 515 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~c~~~ 591 (677)
.....+......... ............ ........+..+++|+.|+|++|.+..+ |..+..+++|++|++++| .+
T Consensus 249 ~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N-~l 326 (844)
T 3j0a_A 249 FHNIKDPDQNTFAGLARSSVRHLDLSHGF-VFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN-LL 326 (844)
T ss_dssp CSSSTTGGGTTTTTTTTSCCCEEECTTCC-CCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESC-CC
T ss_pred ccccCCCChhhhhccccCCccEEECCCCc-ccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCC-CC
Confidence 000000000000000 000000000000 0011123345566777777777776654 445667777777777777 34
Q ss_pred CcC-C-CCCCcc-cceeeccccccceEeCCccccCCCCCCCCCCCCCCCcccCCCccceeeeccccc
Q 038430 592 EQL-P-PLGKLP-LEKLELCHLKSVKRVGNEFLEIEESEDDPSSSSSSSSVTAFPKVKSLEIKELEE 655 (677)
Q Consensus 592 ~~l-~-~l~~l~-L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 655 (677)
..+ | .++.++ |+.|+++++ .++.++... ...+++|+.|+++++.-
T Consensus 327 ~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~------------------~~~l~~L~~L~Ls~N~l 374 (844)
T 3j0a_A 327 GELYSSNFYGLPKVAYIDLQKN-HIAIIQDQT------------------FKFLEKLQTLDLRDNAL 374 (844)
T ss_dssp SCCCSCSCSSCTTCCEEECCSC-CCCCCCSSC------------------SCSCCCCCEEEEETCCS
T ss_pred CccCHHHhcCCCCCCEEECCCC-CCCccChhh------------------hcCCCCCCEEECCCCCC
Confidence 333 3 366777 777777763 454443332 35678888888887754
No 35
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.82 E-value=4.7e-20 Score=207.75 Aligned_cols=311 Identities=16% Similarity=0.148 Sum_probs=190.7
Q ss_pred CCceEEEEEEecCCCcc-cccccCCCcccEEEeCCCCCCCCCCccC-CcccCCCCCcCEEEecCccccccc-hhhccCCC
Q 038430 302 GGKVRHLGLKFKGGASF-PMSIHGLNRLRTLLIDDESPPNSSLDKI-PENVGKLMHLKYLNLSELHIERLP-KTLCELYN 378 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~l~~~~~~~l-p~~~~~l~~L~~L~Ls~~~i~~lp-~~i~~l~~ 378 (677)
..++++|++++|.+..+ |..|.++++|++|++++ +.+..+ |..|+++++|++|++++|.++.+| ..++++++
T Consensus 55 l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~-----n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 129 (606)
T 3vq2_A 55 FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTG-----NPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLIT 129 (606)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT-----CCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTT
T ss_pred CccCcEEeCCCCcccccCHHHhhchhhcCEeECCC-----CcccccChhhcCCcccCCEEEccCCccccccccccCCCCC
Confidence 56788888888888776 46788888899999885 334444 677888888888888888888765 56888888
Q ss_pred cCEEEecCCCCcc-ccCcccccccccceeecCccCCCcccCCcCCCCCCCC----ccCceeeCCCcCCCC----------
Q 038430 379 LQKLDIRGCRNLR-ELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLR----TLDKFAVGGGVDGGS---------- 443 (677)
Q Consensus 379 L~~L~L~~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~----~L~l~~~~~~~~~~~---------- 443 (677)
|++|++++|.... .+|..++++++|++|++++|......|..++.+++|+ +|++..+.....+..
T Consensus 130 L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L 209 (606)
T 3vq2_A 130 LKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHEL 209 (606)
T ss_dssp CCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEE
T ss_pred CCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeee
Confidence 8888888887332 5788888888888888888854444445555555444 455544443321100
Q ss_pred ---------cccccccccCCcCCcccccC--cc---------------------------CCCChhHHHHhhccCCcccC
Q 038430 444 ---------TCRLECLKNFQLIRKCGIEG--LS---------------------------NVSHLDEAERLELKNMENLL 485 (677)
Q Consensus 444 ---------~~~~~~L~~l~~L~~L~i~~--~~---------------------------~~~~~~~~~~~~l~~~~~L~ 485 (677)
......+.++..|+.+.+.. .. ..+........ +..+++|+
T Consensus 210 ~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~ 288 (606)
T 3vq2_A 210 TLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVS 288 (606)
T ss_dssp EEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCS
T ss_pred eccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCC
Confidence 00111122222222221110 00 00111111222 55667788
Q ss_pred ceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcchhhHHHHhhhcCCCCCCcEEEEecC
Q 038430 486 HLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKNEKDEQLLEALQPPLNVEKLWILFN 565 (677)
Q Consensus 486 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 565 (677)
.|+++++.... ...+..+++|++|++++|
T Consensus 289 ~L~l~~~~~~~---------------------------------------------------l~~l~~~~~L~~L~l~~n 317 (606)
T 3vq2_A 289 AMSLAGVSIKY---------------------------------------------------LEDVPKHFKWQSLSIIRC 317 (606)
T ss_dssp EEEEESCCCCC---------------------------------------------------CCCCCTTCCCSEEEEESC
T ss_pred EEEecCccchh---------------------------------------------------hhhccccccCCEEEcccc
Confidence 88887662111 114566778899999998
Q ss_pred CCCCCChhHhhccCCCeEEEeCCCCCCcCCCCCCcc-cceeeccccccceEeC---CccccCC-----CCCCCCCCCCCC
Q 038430 566 GGNILPKWLTSLTNLSDLKLVFCENCEQLPPLGKLP-LEKLELCHLKSVKRVG---NEFLEIE-----ESEDDPSSSSSS 636 (677)
Q Consensus 566 ~~~~lp~~~~~l~~L~~L~l~~c~~~~~l~~l~~l~-L~~L~l~~~~~l~~i~---~~~~~~~-----~~~~~~~~~~~~ 636 (677)
.+..+|.+ .+++|++|++++|.....+ .++.++ |+.|+++++ .++.++ ..+.... ...++.+++ .+
T Consensus 318 ~l~~lp~~--~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n-~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~ 392 (606)
T 3vq2_A 318 QLKQFPTL--DLPFLKSLTLTMNKGSISF-KKVALPSLSYLDLSRN-ALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MS 392 (606)
T ss_dssp CCSSCCCC--CCSSCCEEEEESCSSCEEC-CCCCCTTCCEEECCSS-CEEEEEECCHHHHCCSCCCEEECCSCSEEE-EC
T ss_pred cCcccccC--CCCccceeeccCCcCccch-hhccCCCCCEEECcCC-ccCCCcchhhhhccCCcccEeECCCCcccc-ch
Confidence 88888854 8888888888888555544 456777 888888764 344431 1110000 001111111 23
Q ss_pred CcccCCCccceeeeccccc-CccccccCCccccCCCcccccC
Q 038430 637 SSVTAFPKVKSLEIKELEE-GNYRITRKENISIIPRLSSLRI 677 (677)
Q Consensus 637 ~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~p~L~~L~i 677 (677)
.....+++|+.|+++++.. ...+. ..+..+++|++|++
T Consensus 393 ~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~~l~~L~~L~l 431 (606)
T 3vq2_A 393 ANFMGLEELQHLDFQHSTLKRVTEF---SAFLSLEKLLYLDI 431 (606)
T ss_dssp CCCTTCTTCCEEECTTSEEESTTTT---TTTTTCTTCCEEEC
T ss_pred hhccCCCCCCeeECCCCccCCccCh---hhhhccccCCEEEC
Confidence 4457889999999999877 43321 23336899998875
No 36
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.82 E-value=5.4e-21 Score=196.39 Aligned_cols=246 Identities=16% Similarity=0.143 Sum_probs=195.1
Q ss_pred CcccEEEeCCCCCCCCCCc--cCCcccCCCCCcCEEEecC-cccc-ccchhhccCCCcCEEEecCCCCccccCccccccc
Q 038430 326 NRLRTLLIDDESPPNSSLD--KIPENVGKLMHLKYLNLSE-LHIE-RLPKTLCELYNLQKLDIRGCRNLRELPTGIGKLK 401 (677)
Q Consensus 326 ~~L~~L~l~~~~l~~~~~~--~lp~~~~~l~~L~~L~Ls~-~~i~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~ 401 (677)
.+++.|++++ +.... .+|..++.+++|++|++++ |.+. .+|..++++++|++|++++|.....+|..+++++
T Consensus 50 ~~l~~L~L~~----~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 125 (313)
T 1ogq_A 50 YRVNNLDLSG----LNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK 125 (313)
T ss_dssp CCEEEEEEEC----CCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCT
T ss_pred ceEEEEECCC----CCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCC
Confidence 5799999997 33334 6888999999999999995 7776 7899999999999999999995558999999999
Q ss_pred ccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCC-cCCcccccCccCCCChhHHHHhhccC
Q 038430 402 NMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQ-LIRKCGIEGLSNVSHLDEAERLELKN 480 (677)
Q Consensus 402 ~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~-~L~~L~i~~~~~~~~~~~~~~~~l~~ 480 (677)
+|++|++++|...+.+|..++.+++|++|++.++... ......+..+. +|+.|.+++.. +....+..+..
T Consensus 126 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~-----~~~p~~l~~l~~~L~~L~L~~N~----l~~~~~~~~~~ 196 (313)
T 1ogq_A 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS-----GAIPDSYGSFSKLFTSMTISRNR----LTGKIPPTFAN 196 (313)
T ss_dssp TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCE-----EECCGGGGCCCTTCCEEECCSSE----EEEECCGGGGG
T ss_pred CCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCccc-----CcCCHHHhhhhhcCcEEECcCCe----eeccCChHHhC
Confidence 9999999999766688999999999999999988765 34566778887 89999998743 22223344555
Q ss_pred CcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcchhhHHHHhhhcCCCCCCcEE
Q 038430 481 MENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKNEKDEQLLEALQPPLNVEKL 560 (677)
Q Consensus 481 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L 560 (677)
++ |+.|++++|.... .....+..+++|+.|
T Consensus 197 l~-L~~L~Ls~N~l~~-------------------------------------------------~~~~~~~~l~~L~~L 226 (313)
T 1ogq_A 197 LN-LAFVDLSRNMLEG-------------------------------------------------DASVLFGSDKNTQKI 226 (313)
T ss_dssp CC-CSEEECCSSEEEE-------------------------------------------------CCGGGCCTTSCCSEE
T ss_pred Cc-ccEEECcCCcccC-------------------------------------------------cCCHHHhcCCCCCEE
Confidence 65 9999999872111 133456778999999
Q ss_pred EEecCCCCCCChhHhhccCCCeEEEeCCCCCCcCCC-CCCcc-cceeeccccccce-EeCCccccCCCCCCCCCCCCCCC
Q 038430 561 WILFNGGNILPKWLTSLTNLSDLKLVFCENCEQLPP-LGKLP-LEKLELCHLKSVK-RVGNEFLEIEESEDDPSSSSSSS 637 (677)
Q Consensus 561 ~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~~~~l~~-l~~l~-L~~L~l~~~~~l~-~i~~~~~~~~~~~~~~~~~~~~~ 637 (677)
++++|.+...++.+..+++|++|++++|.....+|. ++.++ |+.|++++++ ++ .++.
T Consensus 227 ~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~ip~------------------- 286 (313)
T 1ogq_A 227 HLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN-LCGEIPQ------------------- 286 (313)
T ss_dssp ECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSE-EEEECCC-------------------
T ss_pred ECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCc-ccccCCC-------------------
Confidence 999999886666678899999999999955446665 88999 9999999853 44 3221
Q ss_pred cccCCCccceeeeccccc
Q 038430 638 SVTAFPKVKSLEIKELEE 655 (677)
Q Consensus 638 ~~~~~~~L~~L~l~~~~~ 655 (677)
...+++|+.|.+.+++.
T Consensus 287 -~~~l~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 287 -GGNLQRFDVSAYANNKC 303 (313)
T ss_dssp -STTGGGSCGGGTCSSSE
T ss_pred -CccccccChHHhcCCCC
Confidence 25689999999998874
No 37
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.82 E-value=8.6e-20 Score=201.58 Aligned_cols=123 Identities=15% Similarity=0.107 Sum_probs=105.9
Q ss_pred EEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCC-cccCCCCCcCEEEecCcccccc-chhhccCCCcCEEE
Q 038430 306 RHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIP-ENVGKLMHLKYLNLSELHIERL-PKTLCELYNLQKLD 383 (677)
Q Consensus 306 ~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp-~~~~~l~~L~~L~Ls~~~i~~l-p~~i~~l~~L~~L~ 383 (677)
+.++++++.+..+|..+. ++|++|++++ +.+..++ ..+..+++|++|++++|.++.+ |..++++++|++|+
T Consensus 3 ~~l~ls~n~l~~ip~~~~--~~L~~L~Ls~-----n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 75 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS--QKTTILNISQ-----NYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLD 75 (520)
T ss_dssp CEEECTTSCCSSCCCSCC--TTCSEEECCS-----SCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEE
T ss_pred ceEecCCCCccccccccc--ccccEEECCC-----CcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEe
Confidence 478899999999997665 8999999996 3445554 6789999999999999999976 66899999999999
Q ss_pred ecCCCCccccCcccccccccceeecCccCCCc-ccCCcCCCCCCCCccCceeeCCC
Q 038430 384 IRGCRNLRELPTGIGKLKNMRSLLNGLTCSLK-YMPIGISKLTSLRTLDKFAVGGG 438 (677)
Q Consensus 384 L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~-~~p~~i~~l~~L~~L~l~~~~~~ 438 (677)
+++|. +..+|.. .+++|++|++++|.... .+|..++++++|++|++.++...
T Consensus 76 Ls~N~-l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~ 128 (520)
T 2z7x_B 76 LSHNK-LVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE 128 (520)
T ss_dssp CCSSC-CCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCC
T ss_pred cCCCc-eeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccc
Confidence 99998 8889986 89999999999996544 46788999999999999987764
No 38
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.82 E-value=2e-20 Score=209.11 Aligned_cols=153 Identities=22% Similarity=0.201 Sum_probs=121.8
Q ss_pred cCCCceEEEEEEecCCCccc-ccccCCCcccEEEeCCCCCCCCCCccC-CcccCCCCCcCEEEecCccccccc-hhhccC
Q 038430 300 AFGGKVRHLGLKFKGGASFP-MSIHGLNRLRTLLIDDESPPNSSLDKI-PENVGKLMHLKYLNLSELHIERLP-KTLCEL 376 (677)
Q Consensus 300 ~~~~~l~~L~l~~~~~~~~p-~~~~~l~~L~~L~l~~~~l~~~~~~~l-p~~~~~l~~L~~L~Ls~~~i~~lp-~~i~~l 376 (677)
.++..++.|++++|.+..++ ..|.++++|++|++++ +.+..+ |..|+++++|++|++++|.++.+| ..++++
T Consensus 25 ~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-----n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 99 (570)
T 2z63_A 25 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSR-----CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL 99 (570)
T ss_dssp SSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTT-----CCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTC
T ss_pred CccccccEEEccCCccCccChhHhhCCCCceEEECCC-----CcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCc
Confidence 45778999999999998775 5789999999999996 334555 456899999999999999998776 569999
Q ss_pred CCcCEEEecCCCCccccCc-ccccccccceeecCccCCCc-ccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCC
Q 038430 377 YNLQKLDIRGCRNLRELPT-GIGKLKNMRSLLNGLTCSLK-YMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQ 454 (677)
Q Consensus 377 ~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~-~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~ 454 (677)
++|++|++++|. +..+|. .++++++|++|++++|.... .+|..++++++|++|++.++.... .....++.+.
T Consensus 100 ~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~-----~~~~~~~~l~ 173 (570)
T 2z63_A 100 SSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS-----IYCTDLRVLH 173 (570)
T ss_dssp TTCCEEECTTSC-CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCE-----ECGGGGHHHH
T ss_pred cccccccccccc-cccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccce-----ecHHHccchh
Confidence 999999999998 777765 68999999999999995443 468889999999999998876652 2334455555
Q ss_pred cC----CcccccC
Q 038430 455 LI----RKCGIEG 463 (677)
Q Consensus 455 ~L----~~L~i~~ 463 (677)
+| ..+.++.
T Consensus 174 ~L~~~~~~L~l~~ 186 (570)
T 2z63_A 174 QMPLLNLSLDLSL 186 (570)
T ss_dssp TCTTCCCEEECTT
T ss_pred ccchhhhhcccCC
Confidence 55 4555554
No 39
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.82 E-value=4.5e-20 Score=205.35 Aligned_cols=130 Identities=21% Similarity=0.247 Sum_probs=105.4
Q ss_pred CCceEEEEEEecCCCccc-ccccCCCcccEEEeCCCCCCCCCCccCCcc-cCCCCCcCEEEecCccccc--cchhhccCC
Q 038430 302 GGKVRHLGLKFKGGASFP-MSIHGLNRLRTLLIDDESPPNSSLDKIPEN-VGKLMHLKYLNLSELHIER--LPKTLCELY 377 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~~~p-~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~-~~~l~~L~~L~Ls~~~i~~--lp~~i~~l~ 377 (677)
..+++.|++++|.+..++ ..|..+++|++|++++ +.+..+|.. ++.+++|++|++++|.++. .|..+++++
T Consensus 49 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~-----n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~ 123 (549)
T 2z81_A 49 CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSD-----NHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT 123 (549)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT-----SCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCT
T ss_pred CCcccEEECCCCCcCccChhhccccccCCEEECCC-----CccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccC
Confidence 568999999999987776 6789999999999996 344555544 8999999999999999884 467789999
Q ss_pred CcCEEEecCCCCccccC-cccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeC
Q 038430 378 NLQKLDIRGCRNLRELP-TGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVG 436 (677)
Q Consensus 378 ~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~ 436 (677)
+|++|++++|..+..+| ..++.+++|++|++++|...+..|..++.+++|++|++..+.
T Consensus 124 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 183 (549)
T 2z81_A 124 NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183 (549)
T ss_dssp TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB
T ss_pred CccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc
Confidence 99999999998677777 468899999999999997666678888877777777665544
No 40
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.82 E-value=8.2e-20 Score=191.18 Aligned_cols=250 Identities=17% Similarity=0.125 Sum_probs=190.7
Q ss_pred cCCCceEEEEEEecCCCcccc-cccCCCcccEEEeCCCCCCCCCCccC-CcccCCCCCcCEEEecCccccccchh-hccC
Q 038430 300 AFGGKVRHLGLKFKGGASFPM-SIHGLNRLRTLLIDDESPPNSSLDKI-PENVGKLMHLKYLNLSELHIERLPKT-LCEL 376 (677)
Q Consensus 300 ~~~~~l~~L~l~~~~~~~~p~-~~~~l~~L~~L~l~~~~l~~~~~~~l-p~~~~~l~~L~~L~Ls~~~i~~lp~~-i~~l 376 (677)
.++.+++.|+++++.+..+|. .+..+++|++|++++ +.+..+ |..++++++|++|++++|.++.+|.. ++++
T Consensus 49 ~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~-----n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 123 (353)
T 2z80_A 49 GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTS-----NGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPL 123 (353)
T ss_dssp TCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT-----SCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTC
T ss_pred cccccCcEEECCCCcCcccCHHHhccCCCCCEEECCC-----CccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCC
Confidence 346789999999999988875 799999999999996 344444 45689999999999999999988876 8999
Q ss_pred CCcCEEEecCCCCccccCc--ccccccccceeecCccCCCccc-CCcCCCCCCCCccCceeeCCCcCCCCcccccccccC
Q 038430 377 YNLQKLDIRGCRNLRELPT--GIGKLKNMRSLLNGLTCSLKYM-PIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNF 453 (677)
Q Consensus 377 ~~L~~L~L~~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~-p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l 453 (677)
++|++|++++|. +..+|. .+..+++|++|++++|..+..+ |..++.+++|++|++.++... ......+..+
T Consensus 124 ~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~-----~~~~~~l~~l 197 (353)
T 2z80_A 124 SSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ-----SYEPKSLKSI 197 (353)
T ss_dssp TTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC-----EECTTTTTTC
T ss_pred ccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC-----ccCHHHHhcc
Confidence 999999999998 778887 6889999999999999656666 467899999999999988765 3346678888
Q ss_pred CcCCcccccCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccch
Q 038430 454 QLIRKCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGE 533 (677)
Q Consensus 454 ~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (677)
++|+.|.+++.. +.......+..+++|+.|++++|......+
T Consensus 198 ~~L~~L~l~~n~----l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~---------------------------------- 239 (353)
T 2z80_A 198 QNVSHLILHMKQ----HILLLEIFVDVTSSVECLELRDTDLDTFHF---------------------------------- 239 (353)
T ss_dssp SEEEEEEEECSC----STTHHHHHHHHTTTEEEEEEESCBCTTCCC----------------------------------
T ss_pred ccCCeecCCCCc----cccchhhhhhhcccccEEECCCCccccccc----------------------------------
Confidence 999999998754 222233334557999999999883222100
Q ss_pred hhhhhcchhhHHHHhhhcCCCCCCcEEEEecCCCC-----CCChhHhhccCCCeEEEeCCCCCCcCCC--CCCcc-ccee
Q 038430 534 YEERRRKNEKDEQLLEALQPPLNVEKLWILFNGGN-----ILPKWLTSLTNLSDLKLVFCENCEQLPP--LGKLP-LEKL 605 (677)
Q Consensus 534 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-----~lp~~~~~l~~L~~L~l~~c~~~~~l~~--l~~l~-L~~L 605 (677)
.........+.++.++++++.+. .+|.++..+++|+.|++++| .+..+|. ++.++ |+.|
T Consensus 240 ------------~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L 306 (353)
T 2z80_A 240 ------------SELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKI 306 (353)
T ss_dssp ------------C------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred ------------cccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEE
Confidence 00011223466777888777654 25777788888888888888 5667775 57888 8888
Q ss_pred eccccc
Q 038430 606 ELCHLK 611 (677)
Q Consensus 606 ~l~~~~ 611 (677)
++++++
T Consensus 307 ~L~~N~ 312 (353)
T 2z80_A 307 WLHTNP 312 (353)
T ss_dssp ECCSSC
T ss_pred EeeCCC
Confidence 888753
No 41
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.82 E-value=1.2e-19 Score=202.39 Aligned_cols=126 Identities=16% Similarity=0.143 Sum_probs=99.9
Q ss_pred CCCceEEEEEEecCCCccc-ccccCCCcccEEEeCCCCCCCCCCccC-CcccCCCCCcCEEEecCccccccchhhccCCC
Q 038430 301 FGGKVRHLGLKFKGGASFP-MSIHGLNRLRTLLIDDESPPNSSLDKI-PENVGKLMHLKYLNLSELHIERLPKTLCELYN 378 (677)
Q Consensus 301 ~~~~l~~L~l~~~~~~~~p-~~~~~l~~L~~L~l~~~~l~~~~~~~l-p~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~ 378 (677)
.+.+++.|++++|.+..++ ..+..+++|++|++++ +.+..+ |..++.+++|++|++++|.++.+|.. .+++
T Consensus 50 ~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~-----N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~ 122 (562)
T 3a79_B 50 LPPRTKALSLSQNSISELRMPDISFLSELRVLRLSH-----NRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMAS 122 (562)
T ss_dssp SCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCS-----CCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTT
T ss_pred CCCCcCEEECCCCCccccChhhhccCCCccEEECCC-----CCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--cccc
Confidence 4678999999999998876 6899999999999996 344444 66788999999999999999998876 8999
Q ss_pred cCEEEecCCCCcccc--CcccccccccceeecCccCCCcccCCcCCCCCCC--CccCceeeCC
Q 038430 379 LQKLDIRGCRNLREL--PTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSL--RTLDKFAVGG 437 (677)
Q Consensus 379 L~~L~L~~~~~l~~l--p~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L--~~L~l~~~~~ 437 (677)
|++|++++|. +..+ |..++++++|++|++++|.... ..+..+++| ++|++..+..
T Consensus 123 L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 123 LRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFRQ---LDLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp CSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBCCT---TTTGGGTTSCEEEEEEEESSC
T ss_pred CCEEECCCCC-ccccCchHhhcccCcccEEecCCCcccc---CchhhhhhceeeEEEeecccc
Confidence 9999999998 6654 4789999999999999985332 234455555 7777766544
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.81 E-value=7.2e-20 Score=189.73 Aligned_cols=266 Identities=16% Similarity=0.146 Sum_probs=197.8
Q ss_pred CCCceEEEEEEecCCCcccc-cccCCCcccEEEeCCCCCCCCCCccC-CcccCCCCCcCEEEecCccccccchhhccCCC
Q 038430 301 FGGKVRHLGLKFKGGASFPM-SIHGLNRLRTLLIDDESPPNSSLDKI-PENVGKLMHLKYLNLSELHIERLPKTLCELYN 378 (677)
Q Consensus 301 ~~~~l~~L~l~~~~~~~~p~-~~~~l~~L~~L~l~~~~l~~~~~~~l-p~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~ 378 (677)
++..++.|+++++.+..++. .+..+++|++|++++ +.+..+ |..++.+++|++|++++|.++.+|..+. ++
T Consensus 50 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~-----n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~ 122 (330)
T 1xku_A 50 LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILIN-----NKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KT 122 (330)
T ss_dssp CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS-----SCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TT
T ss_pred CCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCC-----CcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--cc
Confidence 46789999999999988874 799999999999996 334444 7789999999999999999999988765 79
Q ss_pred cCEEEecCCCCccccCc-ccccccccceeecCccCCCc--ccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCc
Q 038430 379 LQKLDIRGCRNLRELPT-GIGKLKNMRSLLNGLTCSLK--YMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQL 455 (677)
Q Consensus 379 L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~--~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~ 455 (677)
|++|++++|. +..++. .+..+++|++|++++|.... ..+..+..+++|++|++.++.....+ ..+ .++
T Consensus 123 L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~------~~~--~~~ 193 (330)
T 1xku_A 123 LQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP------QGL--PPS 193 (330)
T ss_dssp CCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCC------SSC--CTT
T ss_pred ccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCC------ccc--ccc
Confidence 9999999998 666654 58999999999999995432 45667889999999999887765421 111 267
Q ss_pred CCcccccCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhh
Q 038430 456 IRKCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYE 535 (677)
Q Consensus 456 L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (677)
|+.|.+++.. +.......+..+++|+.|++++|....
T Consensus 194 L~~L~l~~n~----l~~~~~~~~~~l~~L~~L~Ls~n~l~~--------------------------------------- 230 (330)
T 1xku_A 194 LTELHLDGNK----ITKVDAASLKGLNNLAKLGLSFNSISA--------------------------------------- 230 (330)
T ss_dssp CSEEECTTSC----CCEECTGGGTTCTTCCEEECCSSCCCE---------------------------------------
T ss_pred CCEEECCCCc----CCccCHHHhcCCCCCCEEECCCCcCce---------------------------------------
Confidence 8888888743 223334557889999999999882211
Q ss_pred hhhcchhhHHHHhhhcCCCCCCcEEEEecCCCCCCChhHhhccCCCeEEEeCCCCCCcCCC--CC------Ccc-cceee
Q 038430 536 ERRRKNEKDEQLLEALQPPLNVEKLWILFNGGNILPKWLTSLTNLSDLKLVFCENCEQLPP--LG------KLP-LEKLE 606 (677)
Q Consensus 536 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~~~~l~~--l~------~l~-L~~L~ 606 (677)
.....+..+++|+.|++++|.+..+|.++..+++|++|++++| .+..++. +. ..+ |+.|+
T Consensus 231 ----------~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~ 299 (330)
T 1xku_A 231 ----------VDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVS 299 (330)
T ss_dssp ----------ECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEE
T ss_pred ----------eChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceE
Confidence 0112345578999999999999999999999999999999999 6666654 22 246 88899
Q ss_pred ccccccceEeCCccccCCCCCCCCCCCCCCCcccCCCccceeeeccc
Q 038430 607 LCHLKSVKRVGNEFLEIEESEDDPSSSSSSSSVTAFPKVKSLEIKEL 653 (677)
Q Consensus 607 l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 653 (677)
+.+.+ ++.... .+.....+++|+.++++++
T Consensus 300 l~~N~-~~~~~i----------------~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 300 LFSNP-VQYWEI----------------QPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CCSSS-SCGGGS----------------CGGGGTTCCCGGGEEC---
T ss_pred eecCc-cccccc----------------CccccccccceeEEEeccc
Confidence 98743 322110 0111245677888888764
No 43
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.81 E-value=1.3e-19 Score=195.90 Aligned_cols=230 Identities=16% Similarity=0.155 Sum_probs=171.9
Q ss_pred CCceEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcCE
Q 038430 302 GGKVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQK 381 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~ 381 (677)
..+++.|++++|.+..+| +..+++|++|++++| .+..+| ++.+++|++|++++|.++.+| ++.+++|++
T Consensus 63 l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N-----~l~~~~--~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~ 131 (457)
T 3bz5_A 63 LTGLTKLICTSNNITTLD--LSQNTNLTYLACDSN-----KLTNLD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTY 131 (457)
T ss_dssp CTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSS-----CCSCCC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCCE
T ss_pred cCCCCEEEccCCcCCeEc--cccCCCCCEEECcCC-----CCceee--cCCCCcCCEEECCCCcCCeec--CCCCCcCCE
Confidence 578999999999998886 888999999999964 344454 788999999999999999886 889999999
Q ss_pred EEecCCCCccccCcccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccc
Q 038430 382 LDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGI 461 (677)
Q Consensus 382 L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i 461 (677)
|++++|. +..+| ++.+++|++|++++|..++.+ .++.+++|++|++.++.... +. +..+++|+.|.+
T Consensus 132 L~l~~N~-l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-------l~-l~~l~~L~~L~l 198 (457)
T 3bz5_A 132 LNCARNT-LTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-------LD-VSQNKLLNRLNC 198 (457)
T ss_dssp EECTTSC-CSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-------CC-CTTCTTCCEEEC
T ss_pred EECCCCc-cceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-------ec-cccCCCCCEEEC
Confidence 9999998 76675 889999999999999767666 47889999999998887653 22 677888888888
Q ss_pred cCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcch
Q 038430 462 EGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKN 541 (677)
Q Consensus 462 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (677)
++..- ... .+..+++|+.|++++|....
T Consensus 199 ~~N~l-~~~------~l~~l~~L~~L~Ls~N~l~~--------------------------------------------- 226 (457)
T 3bz5_A 199 DTNNI-TKL------DLNQNIQLTFLDCSSNKLTE--------------------------------------------- 226 (457)
T ss_dssp CSSCC-SCC------CCTTCTTCSEEECCSSCCSC---------------------------------------------
T ss_pred cCCcC-Cee------ccccCCCCCEEECcCCcccc---------------------------------------------
Confidence 77432 111 37778999999998872111
Q ss_pred hhHHHHhhhcCCCCCCcEEEEecCCCCCCChhHhhccCC----------CeEEEeCCCCCCcCCCCCCcc-cceeecccc
Q 038430 542 EKDEQLLEALQPPLNVEKLWILFNGGNILPKWLTSLTNL----------SDLKLVFCENCEQLPPLGKLP-LEKLELCHL 610 (677)
Q Consensus 542 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L----------~~L~l~~c~~~~~l~~l~~l~-L~~L~l~~~ 610 (677)
+ + +..+++|+.|++++|.+..+| +..+++| +.|++++|.....+| .+.++ |+.|++++|
T Consensus 227 -----i-p-~~~l~~L~~L~l~~N~l~~~~--~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~-~~~l~~L~~L~Ls~n 296 (457)
T 3bz5_A 227 -----I-D-VTPLTQLTYFDCSVNPLTELD--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ-AEGCRKIKELDVTHN 296 (457)
T ss_dssp -----C-C-CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE-CTTCTTCCCCCCTTC
T ss_pred -----c-C-ccccCCCCEEEeeCCcCCCcC--HHHCCCCCEEeccCCCCCEEECCCCccCCccc-ccccccCCEEECCCC
Confidence 1 1 455678888888888877766 3344444 444555554444444 45667 888888877
Q ss_pred ccceEeC
Q 038430 611 KSVKRVG 617 (677)
Q Consensus 611 ~~l~~i~ 617 (677)
+.+..++
T Consensus 297 ~~l~~l~ 303 (457)
T 3bz5_A 297 TQLYLLD 303 (457)
T ss_dssp TTCCEEE
T ss_pred cccceec
Confidence 7666654
No 44
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.81 E-value=7e-20 Score=204.20 Aligned_cols=142 Identities=17% Similarity=0.164 Sum_probs=113.3
Q ss_pred eEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCC-cccCCCCCcCEEEecCcccccc-chhhccCCCcCEE
Q 038430 305 VRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIP-ENVGKLMHLKYLNLSELHIERL-PKTLCELYNLQKL 382 (677)
Q Consensus 305 l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp-~~~~~l~~L~~L~Ls~~~i~~l-p~~i~~l~~L~~L 382 (677)
.+.++++++.+..+|..+. ++|++|++++ +.+..+| ..++++++|++|++++|.++.+ |..++++++|++|
T Consensus 33 ~~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~-----N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 105 (562)
T 3a79_B 33 ESMVDYSNRNLTHVPKDLP--PRTKALSLSQ-----NSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYL 105 (562)
T ss_dssp CCEEECTTSCCCSCCTTSC--TTCCEEECCS-----SCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred CcEEEcCCCCCccCCCCCC--CCcCEEECCC-----CCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEE
Confidence 3789999999999997664 8999999996 3455555 5789999999999999999977 5679999999999
Q ss_pred EecCCCCccccCcccccccccceeecCccCCCccc--CCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCccc
Q 038430 383 DIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYM--PIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCG 460 (677)
Q Consensus 383 ~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~--p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~ 460 (677)
++++|. +..+|.. .+++|++|++++|. +..+ |..++++++|++|++.++.... ..+..+.++ +|+.|.
T Consensus 106 ~Ls~N~-l~~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~~-----~~~~~l~~L-~L~~L~ 175 (562)
T 3a79_B 106 DVSHNR-LQNISCC--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFRQ-----LDLLPVAHL-HLSCIL 175 (562)
T ss_dssp ECTTSC-CCEECSC--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBCCT-----TTTGGGTTS-CEEEEE
T ss_pred ECCCCc-CCccCcc--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCcccc-----Cchhhhhhc-eeeEEE
Confidence 999998 8899986 89999999999995 4444 4789999999999999877652 233333333 235555
Q ss_pred ccC
Q 038430 461 IEG 463 (677)
Q Consensus 461 i~~ 463 (677)
+.+
T Consensus 176 L~~ 178 (562)
T 3a79_B 176 LDL 178 (562)
T ss_dssp EEE
T ss_pred eec
Confidence 544
No 45
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.81 E-value=1.4e-19 Score=206.64 Aligned_cols=179 Identities=19% Similarity=0.121 Sum_probs=128.2
Q ss_pred cCCCceEEEEEEecCCCccc-ccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccch-hhccCC
Q 038430 300 AFGGKVRHLGLKFKGGASFP-MSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPK-TLCELY 377 (677)
Q Consensus 300 ~~~~~l~~L~l~~~~~~~~p-~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~-~i~~l~ 377 (677)
.++.++++|+++++.+..+| ..|.++++|++|++++ +......|..++++++|++|++++|.++.+|+ .+++++
T Consensus 22 ~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~----n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~ 97 (680)
T 1ziw_A 22 DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGF----NTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCT 97 (680)
T ss_dssp CSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCS----SCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred ccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCC----CccCccCHHHHhcccCcCEEECCCCccCccChhhhccCC
Confidence 34678899999999888776 4688889999999986 32223335667888999999999999888877 488999
Q ss_pred CcCEEEecCCCCccccC-cccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCccccccc--ccCC
Q 038430 378 NLQKLDIRGCRNLRELP-TGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECL--KNFQ 454 (677)
Q Consensus 378 ~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L--~~l~ 454 (677)
+|++|++++|. +..+| ..++++++|++|++++|......|..++++++|++|++.++.... .....+ ..++
T Consensus 98 ~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-----~~~~~~~~~~~~ 171 (680)
T 1ziw_A 98 NLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA-----LKSEELDIFANS 171 (680)
T ss_dssp TCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCC-----BCHHHHGGGTTC
T ss_pred CCCEEECCCCc-cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccc-----cCHHHhhccccc
Confidence 99999999988 55665 568889999999999986555556678888999999888776542 222222 2446
Q ss_pred cCCcccccCccCCCChhHHHHhhccCCcccCceEEEee
Q 038430 455 LIRKCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFE 492 (677)
Q Consensus 455 ~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 492 (677)
+|+.|.+++.. +.......+..+.+|+.|++..+
T Consensus 172 ~L~~L~L~~n~----l~~~~~~~~~~l~~L~~L~l~~~ 205 (680)
T 1ziw_A 172 SLKKLELSSNQ----IKEFSPGCFHAIGRLFGLFLNNV 205 (680)
T ss_dssp EESEEECTTCC----CCCBCTTGGGGSSEECEEECTTC
T ss_pred cccEEECCCCc----ccccChhhhhhhhhhhhhhcccc
Confidence 77777777642 11222333555666666666544
No 46
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.80 E-value=2.1e-19 Score=201.61 Aligned_cols=268 Identities=14% Similarity=0.005 Sum_probs=154.5
Q ss_pred CCceEEEEEEecCCCccc-ccccCCCcccEEEeCCCCCCCCCCccCC-cccCCCCCcCEEEecCccccccchh-hccCCC
Q 038430 302 GGKVRHLGLKFKGGASFP-MSIHGLNRLRTLLIDDESPPNSSLDKIP-ENVGKLMHLKYLNLSELHIERLPKT-LCELYN 378 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~~~p-~~~~~l~~L~~L~l~~~~l~~~~~~~lp-~~~~~l~~L~~L~Ls~~~i~~lp~~-i~~l~~ 378 (677)
...++.|++.+|.+..++ ..|..+++|++|++++ +.+..+| ..++.+++|++|+|++|.++.+|+. ++++++
T Consensus 74 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-----n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~ 148 (597)
T 3oja_B 74 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF-----NAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPK 148 (597)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCS-----SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCC-----CcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCC
Confidence 457888888888877665 4778888888888875 2344444 4467888888888888888877776 478888
Q ss_pred cCEEEecCCCCccccCcccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCC---------cccccc
Q 038430 379 LQKLDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGS---------TCRLEC 449 (677)
Q Consensus 379 L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~---------~~~~~~ 449 (677)
|++|+|++|......|..++.+++|++|++++|. +..+| ++.+++|+.|++.++........ ...+..
T Consensus 149 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~--~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~ 225 (597)
T 3oja_B 149 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINV 225 (597)
T ss_dssp CCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC-CSBCC--GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCE
T ss_pred CCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC-CCCcC--hhhhhhhhhhhcccCccccccCCchhheeeccCCcccc
Confidence 8888888887333344467888888888888874 33333 33344444444433322110000 000000
Q ss_pred --cccCCcCCcccccCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCC
Q 038430 450 --LKNFQLIRKCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGG 527 (677)
Q Consensus 450 --L~~l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (677)
.....+|+.|.++++.-. . ...+..+++|+.|++++|......|.. ++.
T Consensus 226 ~~~~~~~~L~~L~L~~n~l~-~-----~~~l~~l~~L~~L~Ls~N~l~~~~~~~--------~~~--------------- 276 (597)
T 3oja_B 226 VRGPVNVELTILKLQHNNLT-D-----TAWLLNYPGLVEVDLSYNELEKIMYHP--------FVK--------------- 276 (597)
T ss_dssp EECSCCSCCCEEECCSSCCC-C-----CGGGGGCTTCSEEECCSSCCCEEESGG--------GTT---------------
T ss_pred cccccCCCCCEEECCCCCCC-C-----ChhhccCCCCCEEECCCCccCCCCHHH--------hcC---------------
Confidence 000123444444332111 1 122444455555555544111100000 000
Q ss_pred ccccchhhhhhcchhhHHHHhhhcCCCCCCcEEEEecCCCCCCChhHhhccCCCeEEEeCCCCCCcCCCCCCcc-cceee
Q 038430 528 KVVDGEYEERRRKNEKDEQLLEALQPPLNVEKLWILFNGGNILPKWLTSLTNLSDLKLVFCENCEQLPPLGKLP-LEKLE 606 (677)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~~~~l~~l~~l~-L~~L~ 606 (677)
............ ....+...+..+++|+.|+|++|.+..+|.++..+++|++|+|++| .+..+| ++.++ |+.|+
T Consensus 277 -l~~L~~L~Ls~N--~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N-~l~~~~-~~~~~~L~~L~ 351 (597)
T 3oja_B 277 -MQRLERLYISNN--RLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHN-SIVTLK-LSTHHTLKNLT 351 (597)
T ss_dssp -CSSCCEEECTTS--CCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSS-CCCCCC-CCTTCCCSEEE
T ss_pred -ccCCCEEECCCC--CCCCCCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCC-CCCCcC-hhhcCCCCEEE
Confidence 000000000000 0001223345678999999999999999999999999999999999 566665 77889 99999
Q ss_pred ccccc
Q 038430 607 LCHLK 611 (677)
Q Consensus 607 l~~~~ 611 (677)
+++++
T Consensus 352 l~~N~ 356 (597)
T 3oja_B 352 LSHND 356 (597)
T ss_dssp CCSSC
T ss_pred eeCCC
Confidence 99854
No 47
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.79 E-value=2.1e-18 Score=201.23 Aligned_cols=332 Identities=14% Similarity=0.058 Sum_probs=213.1
Q ss_pred EEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCcc-CCcccCCCCCcCEEEecCcc-cccc-chhhccCCCcCEE
Q 038430 306 RHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDK-IPENVGKLMHLKYLNLSELH-IERL-PKTLCELYNLQKL 382 (677)
Q Consensus 306 ~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~-lp~~~~~l~~L~~L~Ls~~~-i~~l-p~~i~~l~~L~~L 382 (677)
+.++.+++.+..+|. ..++|++|++++ +.+.. .|..++++++|++|+|++|. +..+ |..++++++|++|
T Consensus 7 ~~~dcs~~~L~~vP~---lp~~l~~LdLs~-----N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L 78 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ---VLNTTERLLLSF-----NYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRIL 78 (844)
T ss_dssp EEEEESCCCSSCCCS---SCTTCCEEEEES-----CCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEE
T ss_pred eEEEccCCCCCCCCC---CCCCcCEEECCC-----CcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEE
Confidence 456677788888986 458999999996 33444 46779999999999999996 4566 6679999999999
Q ss_pred EecCCCCccccCcccccccccceeecCccCCCcccCCc--CCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCccc
Q 038430 383 DIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIG--ISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCG 460 (677)
Q Consensus 383 ~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~--i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~ 460 (677)
+|++|......|..++++++|++|++++|.....+|.. ++++++|++|++.++.... ......++++++|+.|+
T Consensus 79 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~----~~~~~~~~~L~~L~~L~ 154 (844)
T 3j0a_A 79 DLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRS----LYLHPSFGKLNSLKSID 154 (844)
T ss_dssp ECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCC----CCCCGGGGTCSSCCEEE
T ss_pred ECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccc----cccchhHhhCCCCCEEE
Confidence 99999944455888999999999999999665556665 8999999999999988764 22335788999999999
Q ss_pred ccCccCCCChhHHHHhhccCC--cccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhh
Q 038430 461 IEGLSNVSHLDEAERLELKNM--ENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERR 538 (677)
Q Consensus 461 i~~~~~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (677)
+++..-... ....+..+ ++|+.|+++.|......+.......+..... ....-....+......+.......
T Consensus 155 Ls~N~i~~~----~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~--~L~~L~Ls~n~l~~~~~~~~~~~l 228 (844)
T 3j0a_A 155 FSSNQIFLV----CEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNM--VLEILDVSGNGWTVDITGNFSNAI 228 (844)
T ss_dssp EESSCCCCC----CSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTC--CBSEEBCSSCCSSTTTTSGGGGTS
T ss_pred CCCCcCCee----CHHHcccccCCccceEECCCCccccccccchhhcCCccccC--ceeEEecCCCcCchhHHHHHHhhc
Confidence 987532221 12223333 7899999998843332111000000000000 000000011111100000000000
Q ss_pred cc-h------------------hhHHHHhhhcCC--CCCCcEEEEecCCCCCC-ChhHhhccCCCeEEEeCCCCCCcCC-
Q 038430 539 RK-N------------------EKDEQLLEALQP--PLNVEKLWILFNGGNIL-PKWLTSLTNLSDLKLVFCENCEQLP- 595 (677)
Q Consensus 539 ~~-~------------------~~~~~~~~~l~~--~~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~c~~~~~l~- 595 (677)
.. . .........+.. +++|+.|++++|.+..+ |..+..+++|+.|+|++|......|
T Consensus 229 ~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~ 308 (844)
T 3j0a_A 229 SKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADE 308 (844)
T ss_dssp CSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTT
T ss_pred CcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChH
Confidence 00 0 000000111111 36899999999988754 5667799999999999994333333
Q ss_pred CCCCcc-cceeeccccccceEeCCccccCCCCCCCCCCCCCCCcccCCCccceeeecccccCccccccCCccccCCCccc
Q 038430 596 PLGKLP-LEKLELCHLKSVKRVGNEFLEIEESEDDPSSSSSSSSVTAFPKVKSLEIKELEEGNYRITRKENISIIPRLSS 674 (677)
Q Consensus 596 ~l~~l~-L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~ 674 (677)
.++.++ |+.|+++++ .++.+.... ...+++|+.|+++++.-..++. ..+..+++|++
T Consensus 309 ~~~~l~~L~~L~Ls~N-~l~~~~~~~------------------~~~l~~L~~L~L~~N~i~~~~~---~~~~~l~~L~~ 366 (844)
T 3j0a_A 309 AFYGLDNLQVLNLSYN-LLGELYSSN------------------FYGLPKVAYIDLQKNHIAIIQD---QTFKFLEKLQT 366 (844)
T ss_dssp TTTTCSSCCEEEEESC-CCSCCCSCS------------------CSSCTTCCEEECCSCCCCCCCS---SCSCSCCCCCE
T ss_pred HhcCCCCCCEEECCCC-CCCccCHHH------------------hcCCCCCCEEECCCCCCCccCh---hhhcCCCCCCE
Confidence 378899 999999984 454443222 3678999999999886533332 22346889998
Q ss_pred ccC
Q 038430 675 LRI 677 (677)
Q Consensus 675 L~i 677 (677)
|++
T Consensus 367 L~L 369 (844)
T 3j0a_A 367 LDL 369 (844)
T ss_dssp EEE
T ss_pred EEC
Confidence 864
No 48
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.78 E-value=3.4e-19 Score=199.13 Aligned_cols=131 Identities=17% Similarity=0.166 Sum_probs=101.4
Q ss_pred CCceEEEEEEecCCCccc-ccccCCCcccEEEeCCCCCCCCCCccCC-cccCCCCCcCEEEecCccccccch-hhccCCC
Q 038430 302 GGKVRHLGLKFKGGASFP-MSIHGLNRLRTLLIDDESPPNSSLDKIP-ENVGKLMHLKYLNLSELHIERLPK-TLCELYN 378 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~~~p-~~~~~l~~L~~L~l~~~~l~~~~~~~lp-~~~~~l~~L~~L~Ls~~~i~~lp~-~i~~l~~ 378 (677)
..+++.|++++|.+..++ ..|.++++|++|++++ +.+..+| ..|+++++|++|++++|.++.+|. .++++++
T Consensus 51 l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~-----n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~ 125 (570)
T 2z63_A 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG-----NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125 (570)
T ss_dssp CSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTT-----CCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTT
T ss_pred CCCceEEECCCCcCCccCcccccCchhCCEEeCcC-----CcCCccCHhhhcCccccccccccccccccCCCcccccccc
Confidence 568899999999887775 5688899999999985 3344444 668889999999999999888776 5889999
Q ss_pred cCEEEecCCCCcc--ccCcccccccccceeecCccCCCcccCCcCCCCCCC----CccCceeeCCC
Q 038430 379 LQKLDIRGCRNLR--ELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSL----RTLDKFAVGGG 438 (677)
Q Consensus 379 L~~L~L~~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L----~~L~l~~~~~~ 438 (677)
|++|++++|. +. .+|..++++++|++|++++|......|..++.+++| +.|++.++...
T Consensus 126 L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~ 190 (570)
T 2z63_A 126 LKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190 (570)
T ss_dssp CCEEECCSSC-CCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCC
T ss_pred ccEEecCCCc-cceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCce
Confidence 9999999987 54 468889999999999999885444445567777777 56666555443
No 49
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.78 E-value=1.1e-18 Score=199.19 Aligned_cols=35 Identities=14% Similarity=0.124 Sum_probs=18.6
Q ss_pred cCCCccceeeecccccCccccccCCccc-cCCCcccccC
Q 038430 640 TAFPKVKSLEIKELEEGNYRITRKENIS-IIPRLSSLRI 677 (677)
Q Consensus 640 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~p~L~~L~i 677 (677)
..+++|+.|+++++.-..++.. .+. .+++|++|++
T Consensus 581 ~~l~~L~~L~L~~N~l~~~~~~---~~~~~~~~L~~l~l 616 (680)
T 1ziw_A 581 NNQVSLKSLNLQKNLITSVEKK---VFGPAFRNLTELDM 616 (680)
T ss_dssp TTCTTCCEEECTTSCCCBCCHH---HHHHHHTTCSEEEC
T ss_pred CCCCCCCEEECCCCcCCccChh---HhcccccccCEEEc
Confidence 4567777777777644333221 111 3566766653
No 50
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.78 E-value=4.8e-19 Score=181.42 Aligned_cols=238 Identities=19% Similarity=0.134 Sum_probs=164.1
Q ss_pred EEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcc-cCCCCCcCEEEecCcccccc---chhhccCCCcCEE
Q 038430 307 HLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPEN-VGKLMHLKYLNLSELHIERL---PKTLCELYNLQKL 382 (677)
Q Consensus 307 ~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~-~~~l~~L~~L~Ls~~~i~~l---p~~i~~l~~L~~L 382 (677)
.++..++++..+|..+. ++|++|++++ +.+..+|.. ++.+++|++|++++|.++.+ |..+..+++|++|
T Consensus 11 ~l~c~~~~l~~ip~~~~--~~l~~L~L~~-----n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L 83 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGIP--SSATRLELES-----NKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYL 83 (306)
T ss_dssp EEECCSSCCSSCCSCCC--TTCCEEECCS-----SCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEE
T ss_pred EEEcCCCCcccCCCCCC--CCCCEEECCC-----CccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEE
Confidence 45666666777775443 5788888874 344566654 57788888888888877644 5667778888888
Q ss_pred EecCCCCccccCcccccccccceeecCccCCCcccC--CcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCccc
Q 038430 383 DIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMP--IGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCG 460 (677)
Q Consensus 383 ~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p--~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~ 460 (677)
++++|. +..+|..+..+++|++|++++|. +..++ ..+..+++|++|++.++... ......+..+++|+.|.
T Consensus 84 ~Ls~n~-i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~-----~~~~~~~~~l~~L~~L~ 156 (306)
T 2z66_A 84 DLSFNG-VITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTR-----VAFNGIFNGLSSLEVLK 156 (306)
T ss_dssp ECCSCS-EEEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCE-----ECSTTTTTTCTTCCEEE
T ss_pred ECCCCc-cccChhhcCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCC-----ccchhhcccCcCCCEEE
Confidence 888877 66777777788888888888873 44444 35777788888877766554 22334566677777777
Q ss_pred ccCccCCCChhH-HHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhc
Q 038430 461 IEGLSNVSHLDE-AERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRR 539 (677)
Q Consensus 461 i~~~~~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (677)
+++.. +.. ..+..+..+++|+.|++++|....
T Consensus 157 l~~n~----l~~~~~~~~~~~l~~L~~L~Ls~n~l~~------------------------------------------- 189 (306)
T 2z66_A 157 MAGNS----FQENFLPDIFTELRNLTFLDLSQCQLEQ------------------------------------------- 189 (306)
T ss_dssp CTTCE----EGGGEECSCCTTCTTCCEEECTTSCCCE-------------------------------------------
T ss_pred CCCCc----cccccchhHHhhCcCCCEEECCCCCcCC-------------------------------------------
Confidence 77632 221 223456778889999998772111
Q ss_pred chhhHHHHhhhcCCCCCCcEEEEecCCCCCCCh-hHhhccCCCeEEEeCCCCCCcCC-CCCCcc--cceeeccccc
Q 038430 540 KNEKDEQLLEALQPPLNVEKLWILFNGGNILPK-WLTSLTNLSDLKLVFCENCEQLP-PLGKLP--LEKLELCHLK 611 (677)
Q Consensus 540 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~c~~~~~l~-~l~~l~--L~~L~l~~~~ 611 (677)
.....+..+++|+.|++++|.+..+|. .+..+++|++|++++|......| .+..+| |+.|++++++
T Consensus 190 ------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 190 ------LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp ------ECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred ------cCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 112345667899999999999887765 56789999999999994444444 367774 9999999843
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.77 E-value=6.7e-19 Score=184.24 Aligned_cols=263 Identities=16% Similarity=0.156 Sum_probs=196.4
Q ss_pred EEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCc-ccCCCCCcCEEEecCccccccc-hhhccCCCcCEEEec
Q 038430 308 LGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPE-NVGKLMHLKYLNLSELHIERLP-KTLCELYNLQKLDIR 385 (677)
Q Consensus 308 L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~-~~~~l~~L~~L~Ls~~~i~~lp-~~i~~l~~L~~L~L~ 385 (677)
.+.+++.+..+|..+. ++|++|++++ +.+..+|. .+..+++|++|++++|.++.++ ..++++++|++|+++
T Consensus 36 c~~~~~~l~~iP~~~~--~~L~~L~l~~-----n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (353)
T 2z80_A 36 CKGSSGSLNSIPSGLT--EAVKSLDLSN-----NRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 108 (353)
T ss_dssp EECCSTTCSSCCTTCC--TTCCEEECTT-----SCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred eeCCCCCccccccccc--ccCcEEECCC-----CcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECC
Confidence 5667788888987654 5899999995 44556665 6899999999999999999774 569999999999999
Q ss_pred CCCCccccCcc-cccccccceeecCccCCCcccCC--cCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCccccc
Q 038430 386 GCRNLRELPTG-IGKLKNMRSLLNGLTCSLKYMPI--GISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIE 462 (677)
Q Consensus 386 ~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~--~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~ 462 (677)
+|. +..+|.. ++.+++|++|++++| .+..+|. .++++++|++|++.++.... ......+..+++|+.|.++
T Consensus 109 ~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~----~~~~~~~~~l~~L~~L~l~ 182 (353)
T 2z80_A 109 YNY-LSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFT----KIQRKDFAGLTFLEELEID 182 (353)
T ss_dssp SSC-CSSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCC----EECTTTTTTCCEEEEEEEE
T ss_pred CCc-CCcCCHhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCcccc----ccCHHHccCCCCCCEEECC
Confidence 998 7788876 899999999999999 4667776 68899999999999874322 3344567888889999888
Q ss_pred CccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcchh
Q 038430 463 GLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKNE 542 (677)
Q Consensus 463 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (677)
+.. +.......+..+++|+.|++++|....
T Consensus 183 ~n~----l~~~~~~~l~~l~~L~~L~l~~n~l~~---------------------------------------------- 212 (353)
T 2z80_A 183 ASD----LQSYEPKSLKSIQNVSHLILHMKQHIL---------------------------------------------- 212 (353)
T ss_dssp ETT----CCEECTTTTTTCSEEEEEEEECSCSTT----------------------------------------------
T ss_pred CCC----cCccCHHHHhccccCCeecCCCCcccc----------------------------------------------
Confidence 743 222334557788999999999872111
Q ss_pred hHHHHhhhcCCCCCCcEEEEecCCCCCCCh-hH---hhccCCCeEEEeCCCCCC----cCCC-CCCcc-cceeecccccc
Q 038430 543 KDEQLLEALQPPLNVEKLWILFNGGNILPK-WL---TSLTNLSDLKLVFCENCE----QLPP-LGKLP-LEKLELCHLKS 612 (677)
Q Consensus 543 ~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~-~~---~~l~~L~~L~l~~c~~~~----~l~~-l~~l~-L~~L~l~~~~~ 612 (677)
..... +..+++|+.|++++|.+..++. .+ ...+.++.+++.++.... .+|. ++.++ |+.|++++ +.
T Consensus 213 ~~~~~---~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~-N~ 288 (353)
T 2z80_A 213 LLEIF---VDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSR-NQ 288 (353)
T ss_dssp HHHHH---HHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCS-SC
T ss_pred chhhh---hhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCC-CC
Confidence 11111 2235889999999998876542 12 256778899998883321 2343 67889 99999998 45
Q ss_pred ceEeCCccccCCCCCCCCCCCCCCCcccCCCccceeeeccccc
Q 038430 613 VKRVGNEFLEIEESEDDPSSSSSSSSVTAFPKVKSLEIKELEE 655 (677)
Q Consensus 613 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 655 (677)
++.++...+ ..+++|++|++++++-
T Consensus 289 l~~i~~~~~------------------~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 289 LKSVPDGIF------------------DRLTSLQKIWLHTNPW 313 (353)
T ss_dssp CCCCCTTTT------------------TTCTTCCEEECCSSCB
T ss_pred CCccCHHHH------------------hcCCCCCEEEeeCCCc
Confidence 776655432 5689999999999875
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.77 E-value=4.2e-19 Score=181.87 Aligned_cols=242 Identities=16% Similarity=0.114 Sum_probs=185.8
Q ss_pred cEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchh-hccCCCcCEEEecCCCCcccc---Ccccccccccc
Q 038430 329 RTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKT-LCELYNLQKLDIRGCRNLREL---PTGIGKLKNMR 404 (677)
Q Consensus 329 ~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~-i~~l~~L~~L~L~~~~~l~~l---p~~i~~l~~L~ 404 (677)
+.++.+ +..+..+|..+. ++|++|++++|.++.+|.. +.++++|++|++++|. +..+ |..+..+++|+
T Consensus 10 ~~l~c~-----~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~ 81 (306)
T 2z66_A 10 TEIRCN-----SKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNG-LSFKGCCSQSDFGTTSLK 81 (306)
T ss_dssp TEEECC-----SSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCEEEEEEHHHHSCSCCC
T ss_pred CEEEcC-----CCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCc-cCcccCcccccccccccC
Confidence 456665 456778887553 6899999999999999876 7899999999999998 5544 66778899999
Q ss_pred eeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccccCccCCCChhHHHHhhccCCccc
Q 038430 405 SLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIEGLSNVSHLDEAERLELKNMENL 484 (677)
Q Consensus 405 ~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L 484 (677)
+|++++| .+..+|..+..+++|++|++.++.... ......+..+++|+.|.+++.. +.......+..+++|
T Consensus 82 ~L~Ls~n-~i~~l~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~~l~~L~~L~l~~n~----l~~~~~~~~~~l~~L 152 (306)
T 2z66_A 82 YLDLSFN-GVITMSSNFLGLEQLEHLDFQHSNLKQ----MSEFSVFLSLRNLIYLDISHTH----TRVAFNGIFNGLSSL 152 (306)
T ss_dssp EEECCSC-SEEEEEEEEETCTTCCEEECTTSEEES----STTTTTTTTCTTCCEEECTTSC----CEECSTTTTTTCTTC
T ss_pred EEECCCC-ccccChhhcCCCCCCCEEECCCCcccc----cccchhhhhccCCCEEECCCCc----CCccchhhcccCcCC
Confidence 9999999 566788889999999999998876653 2223567888999999998743 222333457788999
Q ss_pred CceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcchhhHHHHhhhcCCCCCCcEEEEec
Q 038430 485 LHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKNEKDEQLLEALQPPLNVEKLWILF 564 (677)
Q Consensus 485 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 564 (677)
+.|++++|... ....+..+..+++|+.|++++
T Consensus 153 ~~L~l~~n~l~------------------------------------------------~~~~~~~~~~l~~L~~L~Ls~ 184 (306)
T 2z66_A 153 EVLKMAGNSFQ------------------------------------------------ENFLPDIFTELRNLTFLDLSQ 184 (306)
T ss_dssp CEEECTTCEEG------------------------------------------------GGEECSCCTTCTTCCEEECTT
T ss_pred CEEECCCCccc------------------------------------------------cccchhHHhhCcCCCEEECCC
Confidence 99999877110 011234566789999999999
Q ss_pred CCCCCC-ChhHhhccCCCeEEEeCCCCCCcCCC--CCCcc-cceeeccccccceEeCCccccCCCCCCCCCCCCCCCccc
Q 038430 565 NGGNIL-PKWLTSLTNLSDLKLVFCENCEQLPP--LGKLP-LEKLELCHLKSVKRVGNEFLEIEESEDDPSSSSSSSSVT 640 (677)
Q Consensus 565 ~~~~~l-p~~~~~l~~L~~L~l~~c~~~~~l~~--l~~l~-L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~ 640 (677)
|.+..+ |.++..+++|++|++++| .+..++. +..++ |+.|+++++ .++.+.... ..
T Consensus 185 n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~------------------~~ 244 (306)
T 2z66_A 185 CQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQE------------------LQ 244 (306)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTS-CCSBCCSGGGTTCTTCCEEECTTS-CCCBCSSSS------------------CC
T ss_pred CCcCCcCHHHhcCCCCCCEEECCCC-ccCccChhhccCcccCCEeECCCC-CCcccCHHH------------------HH
Confidence 998876 677889999999999999 5666654 77899 999999984 454443322 34
Q ss_pred CCC-ccceeeeccccc
Q 038430 641 AFP-KVKSLEIKELEE 655 (677)
Q Consensus 641 ~~~-~L~~L~l~~~~~ 655 (677)
.+| +|+.|++++++-
T Consensus 245 ~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 245 HFPSSLAFLNLTQNDF 260 (306)
T ss_dssp CCCTTCCEEECTTCCE
T ss_pred hhhccCCEEEccCCCe
Confidence 564 899999998775
No 53
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.76 E-value=6.4e-18 Score=182.98 Aligned_cols=235 Identities=19% Similarity=0.245 Sum_probs=132.8
Q ss_pred EEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccC-CcccCCCCCcCEEEecCccccccc-hhhccCCCcCEEE
Q 038430 306 RHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKI-PENVGKLMHLKYLNLSELHIERLP-KTLCELYNLQKLD 383 (677)
Q Consensus 306 ~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~l-p~~~~~l~~L~~L~Ls~~~i~~lp-~~i~~l~~L~~L~ 383 (677)
..+...+.++..+|..+. +++++|++++ +.+..+ |..|+++++|++|+|++|.++.++ ..+.++++|++|+
T Consensus 57 ~~v~c~~~~l~~iP~~~~--~~l~~L~L~~-----n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 129 (452)
T 3zyi_A 57 SKVVCTRRGLSEVPQGIP--SNTRYLNLME-----NNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLE 129 (452)
T ss_dssp CEEECCSSCCSSCCSCCC--TTCSEEECCS-----SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred cEEEECCCCcCccCCCCC--CCccEEECcC-----CcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEE
Confidence 345555566666665443 5677777774 233333 455677777777777777777554 4577777777777
Q ss_pred ecCCCCccccCcc-cccccccceeecCccCCCcccCC-cCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccc
Q 038430 384 IRGCRNLRELPTG-IGKLKNMRSLLNGLTCSLKYMPI-GISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGI 461 (677)
Q Consensus 384 L~~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i 461 (677)
|++|. +..+|.. +..+++|++|++++|. +..+|. .+.++++|+.|++.++.... ......+..+.+|+.|++
T Consensus 130 L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~----~i~~~~~~~l~~L~~L~L 203 (452)
T 3zyi_A 130 LFDNW-LTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLE----YISEGAFEGLFNLKYLNL 203 (452)
T ss_dssp CCSSC-CSBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCC----EECTTTTTTCTTCCEEEC
T ss_pred CCCCc-CCccChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCcc----ccChhhccCCCCCCEEEC
Confidence 77776 5555543 6667777777777774 444443 46677777777766543222 112223444555555555
Q ss_pred cCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcch
Q 038430 462 EGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKN 541 (677)
Q Consensus 462 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (677)
++..- ... ..+..+++|+.|++++|....
T Consensus 204 ~~n~l-~~~-----~~~~~l~~L~~L~Ls~N~l~~--------------------------------------------- 232 (452)
T 3zyi_A 204 GMCNI-KDM-----PNLTPLVGLEELEMSGNHFPE--------------------------------------------- 232 (452)
T ss_dssp TTSCC-SSC-----CCCTTCTTCCEEECTTSCCSE---------------------------------------------
T ss_pred CCCcc-ccc-----ccccccccccEEECcCCcCcc---------------------------------------------
Confidence 44311 111 124445566666665551110
Q ss_pred hhHHHHhhhcCCCCCCcEEEEecCCCCCC-ChhHhhccCCCeEEEeCCCCCCcCCC--CCCcc-cceeeccc
Q 038430 542 EKDEQLLEALQPPLNVEKLWILFNGGNIL-PKWLTSLTNLSDLKLVFCENCEQLPP--LGKLP-LEKLELCH 609 (677)
Q Consensus 542 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~c~~~~~l~~--l~~l~-L~~L~l~~ 609 (677)
.....+..+++|+.|++++|.+..+ |..+..+++|+.|+|++| .+..+|. +..++ |+.|++++
T Consensus 233 ----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~ 299 (452)
T 3zyi_A 233 ----IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHH 299 (452)
T ss_dssp ----ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCS
T ss_pred ----cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccC
Confidence 0122344556666666666666543 444556666666666666 4445543 45566 66666665
No 54
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.76 E-value=9.1e-18 Score=181.10 Aligned_cols=236 Identities=21% Similarity=0.265 Sum_probs=140.2
Q ss_pred EEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCC-cccCCCCCcCEEEecCccccccc-hhhccCCCcCEEE
Q 038430 306 RHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIP-ENVGKLMHLKYLNLSELHIERLP-KTLCELYNLQKLD 383 (677)
Q Consensus 306 ~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp-~~~~~l~~L~~L~Ls~~~i~~lp-~~i~~l~~L~~L~ 383 (677)
..+...+..+..+|..+. ++++.|++++ +.+..++ ..+.++++|++|+|++|.++.++ ..+.++++|++|+
T Consensus 46 ~~v~c~~~~l~~iP~~~~--~~l~~L~L~~-----n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~ 118 (440)
T 3zyj_A 46 SKVICVRKNLREVPDGIS--TNTRLLNLHE-----NQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLE 118 (440)
T ss_dssp CEEECCSCCCSSCCSCCC--TTCSEEECCS-----CCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEE
T ss_pred CEEEeCCCCcCcCCCCCC--CCCcEEEccC-----CcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEE
Confidence 355666666677775543 5677777775 3344433 55677778888888888777654 4577778888888
Q ss_pred ecCCCCccccCc-ccccccccceeecCccCCCcccC-CcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccc
Q 038430 384 IRGCRNLRELPT-GIGKLKNMRSLLNGLTCSLKYMP-IGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGI 461 (677)
Q Consensus 384 L~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i 461 (677)
|++|. +..+|. .+..+++|++|++++|. +..+| ..+..+++|++|++.++.... ......+..+++|+.|.+
T Consensus 119 L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~----~i~~~~~~~l~~L~~L~L 192 (440)
T 3zyj_A 119 LFDNR-LTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLS----YISEGAFEGLSNLRYLNL 192 (440)
T ss_dssp CCSSC-CSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCC----EECTTTTTTCSSCCEEEC
T ss_pred CCCCc-CCeeCHhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcc----eeCcchhhcccccCeecC
Confidence 88776 666655 47777788888888774 44444 356777777777776543322 222233555555666655
Q ss_pred cCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcch
Q 038430 462 EGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKN 541 (677)
Q Consensus 462 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (677)
++..- ..+ ..+..+++|+.|++++|....
T Consensus 193 ~~n~l-~~~-----~~~~~l~~L~~L~Ls~N~l~~--------------------------------------------- 221 (440)
T 3zyj_A 193 AMCNL-REI-----PNLTPLIKLDELDLSGNHLSA--------------------------------------------- 221 (440)
T ss_dssp TTSCC-SSC-----CCCTTCSSCCEEECTTSCCCE---------------------------------------------
T ss_pred CCCcC-ccc-----cccCCCcccCEEECCCCccCc---------------------------------------------
Confidence 55321 111 124455666666666551110
Q ss_pred hhHHHHhhhcCCCCCCcEEEEecCCCCCC-ChhHhhccCCCeEEEeCCCCCCcCCC--CCCcc-cceeecccc
Q 038430 542 EKDEQLLEALQPPLNVEKLWILFNGGNIL-PKWLTSLTNLSDLKLVFCENCEQLPP--LGKLP-LEKLELCHL 610 (677)
Q Consensus 542 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~c~~~~~l~~--l~~l~-L~~L~l~~~ 610 (677)
.....+..+++|++|+|++|.+..+ |..+..+++|+.|+|++| .+..+|. +..++ |+.|+|+++
T Consensus 222 ----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 289 (440)
T 3zyj_A 222 ----IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHN 289 (440)
T ss_dssp ----ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSS
T ss_pred ----cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCC
Confidence 0122344556677777766666544 334556667777777666 4445543 55666 667766653
No 55
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.76 E-value=1.3e-18 Score=176.32 Aligned_cols=219 Identities=16% Similarity=0.174 Sum_probs=144.3
Q ss_pred EEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCC-cccCCCCCcCEEEecCcccccc-chhhccCCCcCEEE
Q 038430 306 RHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIP-ENVGKLMHLKYLNLSELHIERL-PKTLCELYNLQKLD 383 (677)
Q Consensus 306 ~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp-~~~~~l~~L~~L~Ls~~~i~~l-p~~i~~l~~L~~L~ 383 (677)
+.++..++++..+|..+ .++|++|++++ +.+..+| ..+..+++|++|++++|.++.+ |..+.++++|++|+
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~-----n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 86 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHG-----NRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLD 86 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTT-----SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeC-----CcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEe
Confidence 45666777777777543 46788888875 3444454 4577888888888888888765 56688888888888
Q ss_pred ecCCCCcccc-CcccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCccccc
Q 038430 384 IRGCRNLREL-PTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIE 462 (677)
Q Consensus 384 L~~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~ 462 (677)
+++|..+..+ |..+..+++|++|++++|......|..++.+++|++|++.++.... .....+..+++|+.|.++
T Consensus 87 l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~l~ 161 (285)
T 1ozn_A 87 LSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA-----LPDDTFRDLGNLTHLFLH 161 (285)
T ss_dssp CCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC-----CCTTTTTTCTTCCEEECC
T ss_pred CCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccc-----cCHhHhccCCCccEEECC
Confidence 8888656655 5667888888888888885444445667788888888877766542 222335666667777666
Q ss_pred CccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcchh
Q 038430 463 GLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKNE 542 (677)
Q Consensus 463 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (677)
+.. +.......+..+++|+.|++++|....
T Consensus 162 ~n~----l~~~~~~~~~~l~~L~~L~l~~n~l~~---------------------------------------------- 191 (285)
T 1ozn_A 162 GNR----ISSVPERAFRGLHSLDRLLLHQNRVAH---------------------------------------------- 191 (285)
T ss_dssp SSC----CCEECTTTTTTCTTCCEEECCSSCCCE----------------------------------------------
T ss_pred CCc----ccccCHHHhcCccccCEEECCCCcccc----------------------------------------------
Confidence 531 222222335566777777777661111
Q ss_pred hHHHHhhhcCCCCCCcEEEEecCCCCCCCh-hHhhccCCCeEEEeCCC
Q 038430 543 KDEQLLEALQPPLNVEKLWILFNGGNILPK-WLTSLTNLSDLKLVFCE 589 (677)
Q Consensus 543 ~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~c~ 589 (677)
.....+..+++|+.|++++|.+..+|. .+..+++|++|++++|+
T Consensus 192 ---~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 192 ---VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp ---ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred ---cCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence 012334556777777777777776664 36677777777777773
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.74 E-value=2.8e-18 Score=185.82 Aligned_cols=224 Identities=19% Similarity=0.206 Sum_probs=183.3
Q ss_pred cCCCceEEEEEEecCCCcc-cccccCCCcccEEEeCCCCCCCCCCccC-CcccCCCCCcCEEEecCccccccchh-hccC
Q 038430 300 AFGGKVRHLGLKFKGGASF-PMSIHGLNRLRTLLIDDESPPNSSLDKI-PENVGKLMHLKYLNLSELHIERLPKT-LCEL 376 (677)
Q Consensus 300 ~~~~~l~~L~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~l~~~~~~~l-p~~~~~l~~L~~L~Ls~~~i~~lp~~-i~~l 376 (677)
.++.+++.|++++|.+..+ |..|..+++|++|++++ +.+..+ |..+.++++|++|+|++|.++.+|+. +.++
T Consensus 72 ~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~-----n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 146 (452)
T 3zyi_A 72 GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGR-----NSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYL 146 (452)
T ss_dssp CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCS-----SCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSC
T ss_pred CCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCC-----CccCCcChhhccCcccCCEEECCCCcCCccChhhhccc
Confidence 3467899999999999877 47899999999999996 344444 46789999999999999999988775 8899
Q ss_pred CCcCEEEecCCCCccccCc-ccccccccceeecCccCCCcccCC-cCCCCCCCCccCceeeCCCcCCCCcccccccccCC
Q 038430 377 YNLQKLDIRGCRNLRELPT-GIGKLKNMRSLLNGLTCSLKYMPI-GISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQ 454 (677)
Q Consensus 377 ~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~ 454 (677)
++|++|+|++|. +..+|. .+.++++|++|++++|..+..+|. .+..+.+|++|++.++.... +..+..+.
T Consensus 147 ~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-------~~~~~~l~ 218 (452)
T 3zyi_A 147 SKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-------MPNLTPLV 218 (452)
T ss_dssp TTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-------CCCCTTCT
T ss_pred CCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-------cccccccc
Confidence 999999999998 777765 688999999999999888888876 48899999999999887653 34678888
Q ss_pred cCCcccccCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchh
Q 038430 455 LIRKCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEY 534 (677)
Q Consensus 455 ~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (677)
+|+.|.+++. .+.......+.++++|+.|++++|....
T Consensus 219 ~L~~L~Ls~N----~l~~~~~~~~~~l~~L~~L~L~~n~l~~-------------------------------------- 256 (452)
T 3zyi_A 219 GLEELEMSGN----HFPEIRPGSFHGLSSLKKLWVMNSQVSL-------------------------------------- 256 (452)
T ss_dssp TCCEEECTTS----CCSEECGGGGTTCTTCCEEECTTSCCCE--------------------------------------
T ss_pred cccEEECcCC----cCcccCcccccCccCCCEEEeCCCcCce--------------------------------------
Confidence 9999999884 3334445668889999999998872211
Q ss_pred hhhhcchhhHHHHhhhcCCCCCCcEEEEecCCCCCCChh-HhhccCCCeEEEeCCC
Q 038430 535 EERRRKNEKDEQLLEALQPPLNVEKLWILFNGGNILPKW-LTSLTNLSDLKLVFCE 589 (677)
Q Consensus 535 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~c~ 589 (677)
.....+..+++|+.|+|++|.+..+|.. +..+++|+.|+|++|+
T Consensus 257 -----------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 257 -----------IERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp -----------ECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred -----------ECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 1123456678999999999999988755 5689999999999884
No 57
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.74 E-value=5.8e-18 Score=191.56 Aligned_cols=133 Identities=25% Similarity=0.254 Sum_probs=108.9
Q ss_pred ccCCCceEEEEEEecCCCccc-ccccCCCcccEEEeCCCCCCCCCCccCCc-ccCCCCCcCEEEecCccccccchh-hcc
Q 038430 299 NAFGGKVRHLGLKFKGGASFP-MSIHGLNRLRTLLIDDESPPNSSLDKIPE-NVGKLMHLKYLNLSELHIERLPKT-LCE 375 (677)
Q Consensus 299 ~~~~~~l~~L~l~~~~~~~~p-~~~~~l~~L~~L~l~~~~l~~~~~~~lp~-~~~~l~~L~~L~Ls~~~i~~lp~~-i~~ 375 (677)
..++..+++|++++|.+..+| .+|.++++|++|++++ +.+..+|+ .|.++++|++|+|++|.++.+|+. |.+
T Consensus 48 ~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~-----N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~ 122 (635)
T 4g8a_A 48 DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSR-----CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 122 (635)
T ss_dssp SSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT-----CCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTT
T ss_pred CCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCC-----CcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcC
Confidence 345778999999999999887 5799999999999995 45666654 588999999999999999988764 899
Q ss_pred CCCcCEEEecCCCCccccCc-ccccccccceeecCccCCCc-ccCCcCCCCCCCCccCceeeCC
Q 038430 376 LYNLQKLDIRGCRNLRELPT-GIGKLKNMRSLLNGLTCSLK-YMPIGISKLTSLRTLDKFAVGG 437 (677)
Q Consensus 376 l~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~-~~p~~i~~l~~L~~L~l~~~~~ 437 (677)
+++|++|++++|. +..+|. .++++++|++|++++|.... .+|..++.+++|++|++.++..
T Consensus 123 L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l 185 (635)
T 4g8a_A 123 LSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185 (635)
T ss_dssp CTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred CCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccc
Confidence 9999999999998 777765 58899999999999985332 3567788888888888776543
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.73 E-value=5.1e-18 Score=183.04 Aligned_cols=224 Identities=18% Similarity=0.249 Sum_probs=183.3
Q ss_pred cCCCceEEEEEEecCCCccc-ccccCCCcccEEEeCCCCCCCCCCccCC-cccCCCCCcCEEEecCccccccch-hhccC
Q 038430 300 AFGGKVRHLGLKFKGGASFP-MSIHGLNRLRTLLIDDESPPNSSLDKIP-ENVGKLMHLKYLNLSELHIERLPK-TLCEL 376 (677)
Q Consensus 300 ~~~~~l~~L~l~~~~~~~~p-~~~~~l~~L~~L~l~~~~l~~~~~~~lp-~~~~~l~~L~~L~Ls~~~i~~lp~-~i~~l 376 (677)
.++..++.|++++|.+..++ ..|.++++|++|++++ +.+..++ ..|.++++|++|+|++|.++.+|+ .+..+
T Consensus 61 ~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~-----n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 135 (440)
T 3zyj_A 61 GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSR-----NHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYL 135 (440)
T ss_dssp CCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCS-----SCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSC
T ss_pred CCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCC-----CcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhcc
Confidence 44678999999999998876 7899999999999996 3445554 568999999999999999998877 58999
Q ss_pred CCcCEEEecCCCCccccCc-ccccccccceeecCccCCCcccCC-cCCCCCCCCccCceeeCCCcCCCCcccccccccCC
Q 038430 377 YNLQKLDIRGCRNLRELPT-GIGKLKNMRSLLNGLTCSLKYMPI-GISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQ 454 (677)
Q Consensus 377 ~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~ 454 (677)
++|++|++++|. +..+|. .+..+++|++|++++|..+..+|. .+..+++|++|++.++.... +..+..+.
T Consensus 136 ~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-------~~~~~~l~ 207 (440)
T 3zyj_A 136 SKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-------IPNLTPLI 207 (440)
T ss_dssp SSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-------CCCCTTCS
T ss_pred ccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-------ccccCCCc
Confidence 999999999998 767765 688999999999999878888876 58899999999999887653 34578889
Q ss_pred cCCcccccCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchh
Q 038430 455 LIRKCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEY 534 (677)
Q Consensus 455 ~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (677)
+|+.|++++. .+.......+.++++|+.|++++|....
T Consensus 208 ~L~~L~Ls~N----~l~~~~~~~~~~l~~L~~L~L~~n~l~~-------------------------------------- 245 (440)
T 3zyj_A 208 KLDELDLSGN----HLSAIRPGSFQGLMHLQKLWMIQSQIQV-------------------------------------- 245 (440)
T ss_dssp SCCEEECTTS----CCCEECTTTTTTCTTCCEEECTTCCCCE--------------------------------------
T ss_pred ccCEEECCCC----ccCccChhhhccCccCCEEECCCCceeE--------------------------------------
Confidence 9999999884 3333344568889999999999872211
Q ss_pred hhhhcchhhHHHHhhhcCCCCCCcEEEEecCCCCCCChh-HhhccCCCeEEEeCCC
Q 038430 535 EERRRKNEKDEQLLEALQPPLNVEKLWILFNGGNILPKW-LTSLTNLSDLKLVFCE 589 (677)
Q Consensus 535 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~c~ 589 (677)
.....+..+++|+.|+|++|.+..+|.. +..+++|+.|+|++|+
T Consensus 246 -----------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 246 -----------IERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp -----------ECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred -----------EChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 1123456779999999999999988755 5689999999999884
No 59
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.73 E-value=6.9e-17 Score=179.83 Aligned_cols=237 Identities=18% Similarity=0.140 Sum_probs=153.0
Q ss_pred CCCceEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcC
Q 038430 301 FGGKVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQ 380 (677)
Q Consensus 301 ~~~~l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~ 380 (677)
++.+++.|++++|.+..+|. .+++|++|++++ +.+..+|. .+++|++|++++|.++.+|. .+++|+
T Consensus 59 l~~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~-----N~l~~lp~---~l~~L~~L~Ls~N~l~~l~~---~l~~L~ 124 (622)
T 3g06_A 59 LPAHITTLVIPDNNLTSLPA---LPPELRTLEVSG-----NQLTSLPV---LPPGLLELSIFSNPLTHLPA---LPSGLC 124 (622)
T ss_dssp CCTTCSEEEECSCCCSCCCC---CCTTCCEEEECS-----CCCSCCCC---CCTTCCEEEECSCCCCCCCC---CCTTCC
T ss_pred hCCCCcEEEecCCCCCCCCC---cCCCCCEEEcCC-----CcCCcCCC---CCCCCCEEECcCCcCCCCCC---CCCCcC
Confidence 34677777777777777765 467777777774 33455665 56777777777777777765 566777
Q ss_pred EEEecCCCCccccCcccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCccc
Q 038430 381 KLDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCG 460 (677)
Q Consensus 381 ~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~ 460 (677)
+|++++|. +..+|.. +++|++|++++| .+..+|.. +.+|+.|++.++.... +. ..+++|+.|.
T Consensus 125 ~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N-~l~~l~~~---~~~L~~L~L~~N~l~~-------l~--~~~~~L~~L~ 187 (622)
T 3g06_A 125 KLWIFGNQ-LTSLPVL---PPGLQELSVSDN-QLASLPAL---PSELCKLWAYNNQLTS-------LP--MLPSGLQELS 187 (622)
T ss_dssp EEECCSSC-CSCCCCC---CTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSSCCSC-------CC--CCCTTCCEEE
T ss_pred EEECCCCC-CCcCCCC---CCCCCEEECcCC-cCCCcCCc---cCCCCEEECCCCCCCC-------Cc--ccCCCCcEEE
Confidence 77777776 6667663 367777777777 45555543 3456666666655442 11 3345666666
Q ss_pred ccCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcc
Q 038430 461 IEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRK 540 (677)
Q Consensus 461 i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (677)
++++.- ..++ ..+++|+.|++++|....
T Consensus 188 Ls~N~l-~~l~-------~~~~~L~~L~L~~N~l~~-------------------------------------------- 215 (622)
T 3g06_A 188 VSDNQL-ASLP-------TLPSELYKLWAYNNRLTS-------------------------------------------- 215 (622)
T ss_dssp CCSSCC-SCCC-------CCCTTCCEEECCSSCCSS--------------------------------------------
T ss_pred CCCCCC-CCCC-------CccchhhEEECcCCcccc--------------------------------------------
Confidence 665321 1111 123667777777661111
Q ss_pred hhhHHHHhhhcCCCCCCcEEEEecCCCCCCChhHhhccCCCeEEEeCCCCCCcCCCCCCcc-cceeeccccccceEeCCc
Q 038430 541 NEKDEQLLEALQPPLNVEKLWILFNGGNILPKWLTSLTNLSDLKLVFCENCEQLPPLGKLP-LEKLELCHLKSVKRVGNE 619 (677)
Q Consensus 541 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~~~~l~~l~~l~-L~~L~l~~~~~l~~i~~~ 619 (677)
+. ..+++|+.|++++|.+..+| ..+++|+.|++++| .+..+|. .++ |+.|++++| .++.++..
T Consensus 216 ------l~---~~~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N-~L~~lp~--~~~~L~~L~Ls~N-~L~~lp~~ 279 (622)
T 3g06_A 216 ------LP---ALPSGLKELIVSGNRLTSLP---VLPSELKELMVSGN-RLTSLPM--LPSGLLSLSVYRN-QLTRLPES 279 (622)
T ss_dssp ------CC---CCCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSS-CCCSCCGG
T ss_pred ------cC---CCCCCCCEEEccCCccCcCC---CCCCcCcEEECCCC-CCCcCCc--ccccCcEEeCCCC-CCCcCCHH
Confidence 00 12367888888888888777 45688888888888 6667776 566 888888874 56655432
Q ss_pred cccCCCCCCCCCCCCCCCcccCCCccceeeeccccc
Q 038430 620 FLEIEESEDDPSSSSSSSSVTAFPKVKSLEIKELEE 655 (677)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 655 (677)
...+++|+.|++++++-
T Consensus 280 -------------------l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 280 -------------------LIHLSSETTVNLEGNPL 296 (622)
T ss_dssp -------------------GGGSCTTCEEECCSCCC
T ss_pred -------------------HhhccccCEEEecCCCC
Confidence 25678888888888765
No 60
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.72 E-value=1.6e-19 Score=185.42 Aligned_cols=243 Identities=17% Similarity=0.177 Sum_probs=152.9
Q ss_pred eEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccC-------CCCCcCEEEecCcccc-ccchhh--c
Q 038430 305 VRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVG-------KLMHLKYLNLSELHIE-RLPKTL--C 374 (677)
Q Consensus 305 l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~-------~l~~L~~L~Ls~~~i~-~lp~~i--~ 374 (677)
++.+++.++.+ .+|..+... |+.|+++++.+. ...+|..+. .+++|++|++++|.++ .+|..+ +
T Consensus 45 L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~---~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 118 (312)
T 1wwl_A 45 LEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVR---AARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA 118 (312)
T ss_dssp CTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEE---EEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred ceeEeeccccc-ccHHHHHHH--Hhhccccccccc---CCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence 33444445555 445433332 666666542110 113444343 5677777777777766 566654 6
Q ss_pred cCCCcCEEEecCCCCccccCcccccc-----cccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccc
Q 038430 375 ELYNLQKLDIRGCRNLRELPTGIGKL-----KNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLEC 449 (677)
Q Consensus 375 ~l~~L~~L~L~~~~~l~~lp~~i~~l-----~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 449 (677)
.+++|++|++++|. +..+|..++.+ ++|++|++++|......|..++++++|++|++.++..... ...+..
T Consensus 119 ~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~---~~~~~~ 194 (312)
T 1wwl_A 119 TGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGE---RGLISA 194 (312)
T ss_dssp CSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHH---HHHHHH
T ss_pred cCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcc---hHHHHH
Confidence 67777777777776 55556666665 6777777777743333335677777777777766653210 001222
Q ss_pred c--ccCCcCCcccccCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCC
Q 038430 450 L--KNFQLIRKCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGG 527 (677)
Q Consensus 450 L--~~l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (677)
+ ..+++|+.|.+++.. +..........+..+++|+.|++++|......
T Consensus 195 ~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~----------------------------- 244 (312)
T 1wwl_A 195 LCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHNSLRDAA----------------------------- 244 (312)
T ss_dssp SCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSCCCSSC-----------------------------
T ss_pred HHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCcCCccc-----------------------------
Confidence 3 566777777777642 23333443444567899999999988221100
Q ss_pred ccccchhhhhhcchhhHHHHhhhcCCCCCCcEEEEecCCCCCCChhHhhccCCCeEEEeCCCCCCcCCCCCCcc-cceee
Q 038430 528 KVVDGEYEERRRKNEKDEQLLEALQPPLNVEKLWILFNGGNILPKWLTSLTNLSDLKLVFCENCEQLPPLGKLP-LEKLE 606 (677)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~~~~l~~l~~l~-L~~L~ 606 (677)
....+..+++|+.|++++|.+..+|.++. ++|++|++++| .++.+|.+..++ |+.|+
T Consensus 245 -------------------~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N-~l~~~p~~~~l~~L~~L~ 302 (312)
T 1wwl_A 245 -------------------GAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYN-RLDRNPSPDELPQVGNLS 302 (312)
T ss_dssp -------------------CCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSS-CCCSCCCTTTSCEEEEEE
T ss_pred -------------------chhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCC-CCCCChhHhhCCCCCEEe
Confidence 01223446899999999999999998876 89999999999 777778899999 99999
Q ss_pred ccc
Q 038430 607 LCH 609 (677)
Q Consensus 607 l~~ 609 (677)
+++
T Consensus 303 L~~ 305 (312)
T 1wwl_A 303 LKG 305 (312)
T ss_dssp CTT
T ss_pred ccC
Confidence 997
No 61
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.72 E-value=3.2e-19 Score=183.63 Aligned_cols=240 Identities=14% Similarity=0.099 Sum_probs=149.9
Q ss_pred ccCCCcccEEEeCCCCCCCCCCccCC-cccCCCCCcCEEEecCccccccchhhccCCCcCEEEecCCCCccccCcccccc
Q 038430 322 IHGLNRLRTLLIDDESPPNSSLDKIP-ENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKLDIRGCRNLRELPTGIGKL 400 (677)
Q Consensus 322 ~~~l~~L~~L~l~~~~l~~~~~~~lp-~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l 400 (677)
+..+++|++|++++ +.+..++ ..++.+++|++|++++|.++.+++ +..+++|++|++++|. +..+|. +
T Consensus 30 ~~~~~~L~~L~L~~-----n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~-l~~l~~----~ 98 (317)
T 3o53_A 30 RQSAWNVKELDLSG-----NPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELLV----G 98 (317)
T ss_dssp HTTGGGCSEEECTT-----SCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSE-EEEEEE----C
T ss_pred hccCCCCCEEECcC-----CccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCc-cccccC----C
Confidence 44456777777775 2333333 456777777777777777765554 6777777777777776 555442 3
Q ss_pred cccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccccCccCCCChhHHHHhhc-c
Q 038430 401 KNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIEGLSNVSHLDEAERLEL-K 479 (677)
Q Consensus 401 ~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~l-~ 479 (677)
++|++|++++|. +..++.. .+++|++|++.++... ......+..+++|+.|++++.. +.......+ .
T Consensus 99 ~~L~~L~l~~n~-l~~~~~~--~~~~L~~L~l~~N~l~-----~~~~~~~~~l~~L~~L~Ls~N~----l~~~~~~~~~~ 166 (317)
T 3o53_A 99 PSIETLHAANNN-ISRVSCS--RGQGKKNIYLANNKIT-----MLRDLDEGCRSRVQYLDLKLNE----IDTVNFAELAA 166 (317)
T ss_dssp TTCCEEECCSSC-CSEEEEC--CCSSCEEEECCSSCCC-----SGGGBCTGGGSSEEEEECTTSC----CCEEEGGGGGG
T ss_pred CCcCEEECCCCc-cCCcCcc--ccCCCCEEECCCCCCC-----CccchhhhccCCCCEEECCCCC----CCcccHHHHhh
Confidence 677777777774 3344322 3566777777666554 2233455666777777776632 222112222 3
Q ss_pred CCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcchhhHHHHhhhcCCCCCCcE
Q 038430 480 NMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKNEKDEQLLEALQPPLNVEK 559 (677)
Q Consensus 480 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~ 559 (677)
.+++|+.|++++|.... ......+++|+.
T Consensus 167 ~l~~L~~L~L~~N~l~~---------------------------------------------------~~~~~~l~~L~~ 195 (317)
T 3o53_A 167 SSDTLEHLNLQYNFIYD---------------------------------------------------VKGQVVFAKLKT 195 (317)
T ss_dssp GTTTCCEEECTTSCCCE---------------------------------------------------EECCCCCTTCCE
T ss_pred ccCcCCEEECCCCcCcc---------------------------------------------------cccccccccCCE
Confidence 56788888887771111 012234678888
Q ss_pred EEEecCCCCCCChhHhhccCCCeEEEeCCCCCCcCCC-CCCcc-cceeeccccccce-EeCCccccCCCCCCCCCCCCCC
Q 038430 560 LWILFNGGNILPKWLTSLTNLSDLKLVFCENCEQLPP-LGKLP-LEKLELCHLKSVK-RVGNEFLEIEESEDDPSSSSSS 636 (677)
Q Consensus 560 L~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~~~~l~~-l~~l~-L~~L~l~~~~~l~-~i~~~~~~~~~~~~~~~~~~~~ 636 (677)
|++++|.+..+|..+..+++|++|++++| .+..+|. +..++ |+.|++++++ +. .....+
T Consensus 196 L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~-~~~~~~~~~---------------- 257 (317)
T 3o53_A 196 LDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNG-FHCGTLRDF---------------- 257 (317)
T ss_dssp EECCSSCCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCC-CBHHHHHHH----------------
T ss_pred EECCCCcCCcchhhhcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCC-ccCcCHHHH----------------
Confidence 88888888888877888888888888888 5556664 67788 8888888744 32 111122
Q ss_pred CcccCCCccceeeeccccc
Q 038430 637 SSVTAFPKVKSLEIKELEE 655 (677)
Q Consensus 637 ~~~~~~~~L~~L~l~~~~~ 655 (677)
...+++|+.|.+.++..
T Consensus 258 --~~~~~~L~~l~l~~~~~ 274 (317)
T 3o53_A 258 --FSKNQRVQTVAKQTVKK 274 (317)
T ss_dssp --HHTCHHHHHHHHHHHHH
T ss_pred --HhccccceEEECCCchh
Confidence 24577777777775554
No 62
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.72 E-value=2.8e-18 Score=185.24 Aligned_cols=140 Identities=17% Similarity=0.123 Sum_probs=65.7
Q ss_pred CCceEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCc-------------CEEEecCccccc
Q 038430 302 GGKVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHL-------------KYLNLSELHIER 368 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L-------------~~L~Ls~~~i~~ 368 (677)
...++.+.++++.++.+|..+.++++|++|++++ +...+.+|..++.+.+| ++|++++|.++.
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~----n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~ 85 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAW----SEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS 85 (454)
T ss_dssp ------------------------CCHHHHHHHH----HHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC
T ss_pred cccchhhhcccCchhhCChhHhcccchhhhhccC----CcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc
Confidence 4567888888888888888888888888888876 33334667777766654 777777777776
Q ss_pred cchhhccCCCcCEEEecCCCCccccCcccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCccccc
Q 038430 369 LPKTLCELYNLQKLDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLE 448 (677)
Q Consensus 369 lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~ 448 (677)
+|.. .++|++|++++|. +..+|.. +++|++|++++| .+..+|.. .++|++|++.++.... +.
T Consensus 86 lp~~---~~~L~~L~l~~n~-l~~lp~~---~~~L~~L~l~~n-~l~~l~~~---~~~L~~L~L~~n~l~~-------lp 147 (454)
T 1jl5_A 86 LPEL---PPHLESLVASCNS-LTELPEL---PQSLKSLLVDNN-NLKALSDL---PPLLEYLGVSNNQLEK-------LP 147 (454)
T ss_dssp CCSC---CTTCSEEECCSSC-CSSCCCC---CTTCCEEECCSS-CCSCCCSC---CTTCCEEECCSSCCSS-------CC
T ss_pred CCCC---cCCCCEEEccCCc-CCccccc---cCCCcEEECCCC-ccCcccCC---CCCCCEEECcCCCCCC-------Cc
Confidence 6652 3567777777666 5556642 245566666655 23333321 1455555555544331 12
Q ss_pred ccccCCcCCcccccC
Q 038430 449 CLKNFQLIRKCGIEG 463 (677)
Q Consensus 449 ~L~~l~~L~~L~i~~ 463 (677)
.++.+++|+.|.+++
T Consensus 148 ~~~~l~~L~~L~l~~ 162 (454)
T 1jl5_A 148 ELQNSSFLKIIDVDN 162 (454)
T ss_dssp CCTTCTTCCEEECCS
T ss_pred ccCCCCCCCEEECCC
Confidence 355555555555554
No 63
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.70 E-value=1.4e-17 Score=181.52 Aligned_cols=210 Identities=16% Similarity=0.096 Sum_probs=122.8
Q ss_pred cccEEEeCCCCCCCCCCccC-CcccCCCCCcCEEEecCccccccchhhccCCCcCEEEecCCCCccccCcccccccccce
Q 038430 327 RLRTLLIDDESPPNSSLDKI-PENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKLDIRGCRNLRELPTGIGKLKNMRS 405 (677)
Q Consensus 327 ~L~~L~l~~~~l~~~~~~~l-p~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~ 405 (677)
+|++|++++ +.+..+ |..++.+++|++|+|++|.++..++ ++.+++|++|+|++|. +..+|. .++|++
T Consensus 35 ~L~~L~Ls~-----n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~----~~~L~~ 103 (487)
T 3oja_A 35 NVKELDLSG-----NPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELLV----GPSIET 103 (487)
T ss_dssp GCCEEECCS-----SCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE-EEEEEE----CTTCCE
T ss_pred CccEEEeeC-----CcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc-CCCCCC----CCCcCE
Confidence 666666664 222333 3456666666666666666664443 6666666666666665 554443 256666
Q ss_pred eecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccccCccCCCChhHHHHhhcc-CCccc
Q 038430 406 LLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIEGLSNVSHLDEAERLELK-NMENL 484 (677)
Q Consensus 406 L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~l~-~~~~L 484 (677)
|++++|. +..+|. ..+++|+.|++.++... ......+..+++|+.|++++.. +....+..+. .+++|
T Consensus 104 L~L~~N~-l~~~~~--~~l~~L~~L~L~~N~l~-----~~~~~~~~~l~~L~~L~Ls~N~----l~~~~~~~l~~~l~~L 171 (487)
T 3oja_A 104 LHAANNN-ISRVSC--SRGQGKKNIYLANNKIT-----MLRDLDEGCRSRVQYLDLKLNE----IDTVNFAELAASSDTL 171 (487)
T ss_dssp EECCSSC-CCCEEE--CCCSSCEEEECCSSCCC-----SGGGBCGGGGSSEEEEECTTSC----CCEEEGGGGGGGTTTC
T ss_pred EECcCCc-CCCCCc--cccCCCCEEECCCCCCC-----CCCchhhcCCCCCCEEECCCCC----CCCcChHHHhhhCCcc
Confidence 6666663 333332 13455666666655544 2233345556666666666532 2222222332 56777
Q ss_pred CceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcchhhHHHHhhhcCCCCCCcEEEEec
Q 038430 485 LHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKNEKDEQLLEALQPPLNVEKLWILF 564 (677)
Q Consensus 485 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 564 (677)
+.|++++|.... ......+++|+.|+|++
T Consensus 172 ~~L~Ls~N~l~~---------------------------------------------------~~~~~~l~~L~~L~Ls~ 200 (487)
T 3oja_A 172 EHLNLQYNFIYD---------------------------------------------------VKGQVVFAKLKTLDLSS 200 (487)
T ss_dssp CEEECTTSCCCE---------------------------------------------------EECCCCCTTCCEEECCS
T ss_pred cEEecCCCcccc---------------------------------------------------ccccccCCCCCEEECCC
Confidence 777777661111 01223467788888888
Q ss_pred CCCCCCChhHhhccCCCeEEEeCCCCCCcCCC-CCCcc-cceeeccccc
Q 038430 565 NGGNILPKWLTSLTNLSDLKLVFCENCEQLPP-LGKLP-LEKLELCHLK 611 (677)
Q Consensus 565 ~~~~~lp~~~~~l~~L~~L~l~~c~~~~~l~~-l~~l~-L~~L~l~~~~ 611 (677)
|.+..+|+.+..+++|+.|++++| .+..+|. ++.++ |+.|++++++
T Consensus 201 N~l~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 201 NKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp SCCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCC
T ss_pred CCCCCCCHhHcCCCCccEEEecCC-cCcccchhhccCCCCCEEEcCCCC
Confidence 887777777778888888888877 4555554 66777 8888887743
No 64
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.70 E-value=3.4e-16 Score=168.88 Aligned_cols=274 Identities=16% Similarity=0.152 Sum_probs=133.0
Q ss_pred CCceEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcCE
Q 038430 302 GGKVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQK 381 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~ 381 (677)
+.+++.|++++|.+..+| .+..+++|++|++++| .+..+|..+ .+|++|++++|.++.+| .++++++|++
T Consensus 130 ~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N-----~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~ 199 (454)
T 1jl5_A 130 PPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNN-----SLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTA 199 (454)
T ss_dssp CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSS-----CCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCE
T ss_pred CCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCC-----cCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCE
Confidence 356666666666666666 4666666666666642 233344322 36666666666666655 4666666666
Q ss_pred EEecCCCCccccCcccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccc
Q 038430 382 LDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGI 461 (677)
Q Consensus 382 L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i 461 (677)
|++++|. +..+|... ++|++|++++| .+..+| .++.+++|++|++.++.....+ . .+.+|+.|.+
T Consensus 200 L~l~~N~-l~~l~~~~---~~L~~L~l~~n-~l~~lp-~~~~l~~L~~L~l~~N~l~~l~-------~--~~~~L~~L~l 264 (454)
T 1jl5_A 200 IYADNNS-LKKLPDLP---LSLESIVAGNN-ILEELP-ELQNLPFLTTIYADNNLLKTLP-------D--LPPSLEALNV 264 (454)
T ss_dssp EECCSSC-CSSCCCCC---TTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSSCCSSCC-------S--CCTTCCEEEC
T ss_pred EECCCCc-CCcCCCCc---CcccEEECcCC-cCCccc-ccCCCCCCCEEECCCCcCCccc-------c--cccccCEEEC
Confidence 6666665 44455422 35666666666 344555 3666666666666655443211 0 1244555555
Q ss_pred cCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcch
Q 038430 462 EGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKN 541 (677)
Q Consensus 462 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (677)
++..- ..++ ...++|+.|++++|.... ...... ...+.......
T Consensus 265 ~~N~l-~~l~-------~~~~~L~~L~ls~N~l~~---------------------l~~~~~-------~L~~L~l~~N~ 308 (454)
T 1jl5_A 265 RDNYL-TDLP-------ELPQSLTFLDVSENIFSG---------------------LSELPP-------NLYYLNASSNE 308 (454)
T ss_dssp CSSCC-SCCC-------CCCTTCCEEECCSSCCSE---------------------ESCCCT-------TCCEEECCSSC
T ss_pred CCCcc-cccC-------cccCcCCEEECcCCccCc---------------------ccCcCC-------cCCEEECcCCc
Confidence 54321 1111 012456666665551110 000000 00000000000
Q ss_pred hhHHHHhhhcCC-CCCCcEEEEecCCCCCCChhHhhccCCCeEEEeCCCCCCcCCCCCCcc-cceeeccccccceEe---
Q 038430 542 EKDEQLLEALQP-PLNVEKLWILFNGGNILPKWLTSLTNLSDLKLVFCENCEQLPPLGKLP-LEKLELCHLKSVKRV--- 616 (677)
Q Consensus 542 ~~~~~~~~~l~~-~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~~~~l~~l~~l~-L~~L~l~~~~~l~~i--- 616 (677)
+..+.. +++|+.|++++|.+..+|.+ +++|++|++++| .+..+|. .++ |+.|+++++ .++.+
T Consensus 309 ------l~~i~~~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N-~l~~lp~--~l~~L~~L~L~~N-~l~~l~~i 375 (454)
T 1jl5_A 309 ------IRSLCDLPPSLEELNVSNNKLIELPAL---PPRLERLIASFN-HLAEVPE--LPQNLKQLHVEYN-PLREFPDI 375 (454)
T ss_dssp ------CSEECCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSS-CCSSCCCC
T ss_pred ------CCcccCCcCcCCEEECCCCcccccccc---CCcCCEEECCCC-ccccccc--hhhhccEEECCCC-CCCcCCCC
Confidence 011222 35889999999988888764 588999999988 6667877 467 999999874 44442
Q ss_pred CCccccCCCCCCCCCCCCCCCcccCCCccceeeeccccc
Q 038430 617 GNEFLEIEESEDDPSSSSSSSSVTAFPKVKSLEIKELEE 655 (677)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 655 (677)
+..+.. ...+.+.|..+. .+++|+.|++++++-
T Consensus 376 p~~l~~---L~~n~~~~~i~~---~~~~L~~L~ls~N~l 408 (454)
T 1jl5_A 376 PESVED---LRMNSHLAEVPE---LPQNLKQLHVETNPL 408 (454)
T ss_dssp CTTCCE---EECCC-------------------------
T ss_pred hHHHHh---hhhccccccccc---ccCcCCEEECCCCcC
Confidence 222110 111223333332 347889999888765
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.69 E-value=8.3e-19 Score=180.50 Aligned_cols=242 Identities=12% Similarity=0.038 Sum_probs=187.3
Q ss_pred CCceEEEEEEecCCCccc-ccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcC
Q 038430 302 GGKVRHLGLKFKGGASFP-MSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQ 380 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~~~p-~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~ 380 (677)
..+++.|++++|.+..++ ..+..+++|++|++++ +.+..+++ +..+++|++|++++|.++.+|. .++|+
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~-----n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~----~~~L~ 102 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS-----NVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIE 102 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTT-----SCCEEEEE-ETTCTTCCEEECCSSEEEEEEE----CTTCC
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCC-----CcCCcchh-hhhcCCCCEEECcCCccccccC----CCCcC
Confidence 457999999999998776 6899999999999996 34444444 8999999999999999987763 48999
Q ss_pred EEEecCCCCccccCcccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCccccccc-ccCCcCCcc
Q 038430 381 KLDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECL-KNFQLIRKC 459 (677)
Q Consensus 381 ~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L-~~l~~L~~L 459 (677)
+|++++|. +..++. ..+++|++|++++|......|..++.+++|++|++.++.... .....+ ..+++|+.|
T Consensus 103 ~L~l~~n~-l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-----~~~~~~~~~l~~L~~L 174 (317)
T 3o53_A 103 TLHAANNN-ISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT-----VNFAELAASSDTLEHL 174 (317)
T ss_dssp EEECCSSC-CSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCE-----EEGGGGGGGTTTCCEE
T ss_pred EEECCCCc-cCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCc-----ccHHHHhhccCcCCEE
Confidence 99999998 766664 347899999999996444445678899999999999887653 233444 478889999
Q ss_pred cccCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhc
Q 038430 460 GIEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRR 539 (677)
Q Consensus 460 ~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (677)
.+++..- . .. .....+++|+.|++++|....
T Consensus 175 ~L~~N~l-~---~~--~~~~~l~~L~~L~Ls~N~l~~------------------------------------------- 205 (317)
T 3o53_A 175 NLQYNFI-Y---DV--KGQVVFAKLKTLDLSSNKLAF------------------------------------------- 205 (317)
T ss_dssp ECTTSCC-C---EE--ECCCCCTTCCEEECCSSCCCE-------------------------------------------
T ss_pred ECCCCcC-c---cc--ccccccccCCEEECCCCcCCc-------------------------------------------
Confidence 9987532 1 11 223458999999999882111
Q ss_pred chhhHHHHhhhcCCCCCCcEEEEecCCCCCCChhHhhccCCCeEEEeCCCCC-CcCCC-CCCcc-cceeeccccccceEe
Q 038430 540 KNEKDEQLLEALQPPLNVEKLWILFNGGNILPKWLTSLTNLSDLKLVFCENC-EQLPP-LGKLP-LEKLELCHLKSVKRV 616 (677)
Q Consensus 540 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~~-~~l~~-l~~l~-L~~L~l~~~~~l~~i 616 (677)
+...+..+++|+.|++++|.+..+|..+..+++|+.|++++|+.. ..+|. ++.++ |+.|++.+++.++..
T Consensus 206 -------l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 206 -------MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp -------ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred -------chhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCC
Confidence 222345678999999999999999999999999999999999544 34443 67889 999999987777654
Q ss_pred C
Q 038430 617 G 617 (677)
Q Consensus 617 ~ 617 (677)
.
T Consensus 279 ~ 279 (317)
T 3o53_A 279 N 279 (317)
T ss_dssp S
T ss_pred c
Confidence 3
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.69 E-value=3.5e-18 Score=175.36 Aligned_cols=250 Identities=16% Similarity=0.130 Sum_probs=183.9
Q ss_pred ccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCcccc--ccchhhc-------cCCCcCEEEecCCCCccc
Q 038430 322 IHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIE--RLPKTLC-------ELYNLQKLDIRGCRNLRE 392 (677)
Q Consensus 322 ~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~--~lp~~i~-------~l~~L~~L~L~~~~~l~~ 392 (677)
++..++|+.|++++ +.+ .+|..+... |+.|++++|.+. .+|..+. ++++|++|++++|.....
T Consensus 39 ~~~~~~L~~l~l~~-----n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 110 (312)
T 1wwl_A 39 YGGGRSLEYLLKRV-----DTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGT 110 (312)
T ss_dssp EEEEEECTTHHHHC-----CTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSC
T ss_pred EccCCCceeEeecc-----ccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccch
Confidence 44566788888886 333 778766544 999999999985 5677666 799999999999995557
Q ss_pred cCccc--ccccccceeecCccCCCcccCCcCCCC-----CCCCccCceeeCCCcCCCCcccccccccCCcCCcccccCcc
Q 038430 393 LPTGI--GKLKNMRSLLNGLTCSLKYMPIGISKL-----TSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIEGLS 465 (677)
Q Consensus 393 lp~~i--~~l~~L~~L~l~~~~~~~~~p~~i~~l-----~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~ 465 (677)
+|..+ +.+++|++|++++|. +..+|..++.+ ++|++|++.++... ......+..+++|+.|.+++..
T Consensus 111 ~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~-----~~~~~~~~~l~~L~~L~Ls~N~ 184 (312)
T 1wwl_A 111 APPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAHSL-----NFSCEQVRVFPALSTLDLSDNP 184 (312)
T ss_dssp CCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCSCC-----CCCTTTCCCCSSCCEEECCSCT
T ss_pred hHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCCCc-----cchHHHhccCCCCCEEECCCCC
Confidence 88876 899999999999995 55558777776 89999999998876 3344678899999999998843
Q ss_pred CCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcchhhHH
Q 038430 466 NVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKNEKDE 545 (677)
Q Consensus 466 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (677)
-...........+..+++|+.|++++|.... ..
T Consensus 185 l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~-----------------------------------------------~~ 217 (312)
T 1wwl_A 185 ELGERGLISALCPLKFPTLQVLALRNAGMET-----------------------------------------------PS 217 (312)
T ss_dssp TCHHHHHHHHSCTTSCTTCCEEECTTSCCCC-----------------------------------------------HH
T ss_pred cCcchHHHHHHHhccCCCCCEEECCCCcCcc-----------------------------------------------hH
Confidence 2111111112223788999999999882111 11
Q ss_pred HHh-hhcCCCCCCcEEEEecCCCCCCC--hhHhhccCCCeEEEeCCCCCCcCCCCCCcc-cceeeccccccceEeCCccc
Q 038430 546 QLL-EALQPPLNVEKLWILFNGGNILP--KWLTSLTNLSDLKLVFCENCEQLPPLGKLP-LEKLELCHLKSVKRVGNEFL 621 (677)
Q Consensus 546 ~~~-~~l~~~~~L~~L~l~~~~~~~lp--~~~~~l~~L~~L~l~~c~~~~~l~~l~~l~-L~~L~l~~~~~l~~i~~~~~ 621 (677)
.+. ..+..+++|+.|++++|.+...+ ..+..+++|++|++++| .++.+|.--. + |+.|++++ +.++.++.
T Consensus 218 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~-~~L~~L~Ls~-N~l~~~p~--- 291 (312)
T 1wwl_A 218 GVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT-GLKQVPKGLP-AKLSVLDLSY-NRLDRNPS--- 291 (312)
T ss_dssp HHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTS-CCSSCCSSCC-SEEEEEECCS-SCCCSCCC---
T ss_pred HHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCC-ccChhhhhcc-CCceEEECCC-CCCCCChh---
Confidence 222 22345689999999999988754 34557899999999999 5668876222 8 99999997 55665532
Q ss_pred cCCCCCCCCCCCCCCCcccCCCccceeeeccccc
Q 038430 622 EIEESEDDPSSSSSSSSVTAFPKVKSLEIKELEE 655 (677)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 655 (677)
...+++|++|++++++-
T Consensus 292 -----------------~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 292 -----------------PDELPQVGNLSLKGNPF 308 (312)
T ss_dssp -----------------TTTSCEEEEEECTTCTT
T ss_pred -----------------HhhCCCCCEEeccCCCC
Confidence 25789999999998763
No 67
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.68 E-value=4.5e-17 Score=164.87 Aligned_cols=177 Identities=19% Similarity=0.255 Sum_probs=143.7
Q ss_pred cCCCceEEEEEEecCCCccc-ccccCCCcccEEEeCCCCCCCCCCccC-CcccCCCCCcCEEEecCcc-cccc-chhhcc
Q 038430 300 AFGGKVRHLGLKFKGGASFP-MSIHGLNRLRTLLIDDESPPNSSLDKI-PENVGKLMHLKYLNLSELH-IERL-PKTLCE 375 (677)
Q Consensus 300 ~~~~~l~~L~l~~~~~~~~p-~~~~~l~~L~~L~l~~~~l~~~~~~~l-p~~~~~l~~L~~L~Ls~~~-i~~l-p~~i~~ 375 (677)
.++.+++.|+++++.+..++ ..+..+++|++|++++ +.+..+ |..+..+++|++|++++|. +..+ |..+..
T Consensus 29 ~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~-----n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~ 103 (285)
T 1ozn_A 29 GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHS-----NVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHG 103 (285)
T ss_dssp TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCS-----SCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTT
T ss_pred CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCC-----CccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcC
Confidence 35779999999999998887 5789999999999996 334444 6778999999999999997 8877 667999
Q ss_pred CCCcCEEEecCCCCcccc-CcccccccccceeecCccCCCcccCC-cCCCCCCCCccCceeeCCCcCCCCcccccccccC
Q 038430 376 LYNLQKLDIRGCRNLREL-PTGIGKLKNMRSLLNGLTCSLKYMPI-GISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNF 453 (677)
Q Consensus 376 l~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l 453 (677)
+++|++|++++|. +..+ |..+..+++|++|++++|. +..+|. .++.+++|++|++.++.... .....+..+
T Consensus 104 l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~-----~~~~~~~~l 176 (285)
T 1ozn_A 104 LGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISS-----VPERAFRGL 176 (285)
T ss_dssp CTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCE-----ECTTTTTTC
T ss_pred CcCCCEEECCCCc-CCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCCcccc-----cCHHHhcCc
Confidence 9999999999998 5555 6678999999999999995 555554 58899999999999887652 233457788
Q ss_pred CcCCcccccCccCCCChhHHHHhhccCCcccCceEEEee
Q 038430 454 QLIRKCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFE 492 (677)
Q Consensus 454 ~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 492 (677)
++|+.|.+++.. +.......+..+++|+.|++++|
T Consensus 177 ~~L~~L~l~~n~----l~~~~~~~~~~l~~L~~L~l~~n 211 (285)
T 1ozn_A 177 HSLDRLLLHQNR----VAHVHPHAFRDLGRLMTLYLFAN 211 (285)
T ss_dssp TTCCEEECCSSC----CCEECTTTTTTCTTCCEEECCSS
T ss_pred cccCEEECCCCc----ccccCHhHccCcccccEeeCCCC
Confidence 999999998743 33333456788899999999988
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.67 E-value=2.8e-18 Score=187.03 Aligned_cols=235 Identities=12% Similarity=0.037 Sum_probs=184.1
Q ss_pred CCceEEEEEEecCCCccc-ccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcC
Q 038430 302 GGKVRHLGLKFKGGASFP-MSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQ 380 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~~~p-~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~ 380 (677)
+.+++.|++++|.+..++ ..+..+++|++|++++ +.+...++ ++.+++|++|+|++|.++.+|. .++|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-----N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~----~~~L~ 102 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS-----NVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIE 102 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTT-----SCCEEEEE-CTTCTTCCEEECCSSEEEEEEE----CTTCC
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeC-----CCCCCCcc-cccCCCCCEEEecCCcCCCCCC----CCCcC
Confidence 448999999999998775 6899999999999996 33444443 8999999999999999988764 38999
Q ss_pred EEEecCCCCccccCcccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccc-cCCcCCcc
Q 038430 381 KLDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLK-NFQLIRKC 459 (677)
Q Consensus 381 ~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~-~l~~L~~L 459 (677)
+|++++|. +..+|. ..+++|+.|++++|......|..++.+++|++|++.++... ...+..+. .+++|+.|
T Consensus 103 ~L~L~~N~-l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-----~~~~~~l~~~l~~L~~L 174 (487)
T 3oja_A 103 TLHAANNN-ISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID-----TVNFAELAASSDTLEHL 174 (487)
T ss_dssp EEECCSSC-CCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCC-----EEEGGGGGGGTTTCCEE
T ss_pred EEECcCCc-CCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCC-----CcChHHHhhhCCcccEE
Confidence 99999998 666655 35789999999999655555778899999999999988776 33445554 78899999
Q ss_pred cccCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhc
Q 038430 460 GIEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRR 539 (677)
Q Consensus 460 ~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (677)
+++++.- ... ..+..+++|+.|++++|....
T Consensus 175 ~Ls~N~l----~~~--~~~~~l~~L~~L~Ls~N~l~~------------------------------------------- 205 (487)
T 3oja_A 175 NLQYNFI----YDV--KGQVVFAKLKTLDLSSNKLAF------------------------------------------- 205 (487)
T ss_dssp ECTTSCC----CEE--ECCCCCTTCCEEECCSSCCCE-------------------------------------------
T ss_pred ecCCCcc----ccc--cccccCCCCCEEECCCCCCCC-------------------------------------------
Confidence 9988532 221 224468999999999882111
Q ss_pred chhhHHHHhhhcCCCCCCcEEEEecCCCCCCChhHhhccCCCeEEEeCCCCC-CcCCC-CCCcc-cceeecccc
Q 038430 540 KNEKDEQLLEALQPPLNVEKLWILFNGGNILPKWLTSLTNLSDLKLVFCENC-EQLPP-LGKLP-LEKLELCHL 610 (677)
Q Consensus 540 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~~-~~l~~-l~~l~-L~~L~l~~~ 610 (677)
++..+..+++|+.|+|++|.+..+|.++..+++|+.|++++|+.. ..+|. ++.++ |+.|.+..+
T Consensus 206 -------~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~~ 272 (487)
T 3oja_A 206 -------MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (487)
T ss_dssp -------ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -------CCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecccc
Confidence 222355678999999999999999999999999999999999544 34443 67788 888888643
No 69
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.66 E-value=1.5e-15 Score=171.81 Aligned_cols=140 Identities=16% Similarity=0.134 Sum_probs=109.8
Q ss_pred EecCCCcccccccCCCcccEEEeCCCCCCCCCCccCC-cccCCCCCcCEEEecCccccccch-hhccCCCcCEEEecCCC
Q 038430 311 KFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIP-ENVGKLMHLKYLNLSELHIERLPK-TLCELYNLQKLDIRGCR 388 (677)
Q Consensus 311 ~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp-~~~~~l~~L~~L~Ls~~~i~~lp~-~i~~l~~L~~L~L~~~~ 388 (677)
.+.++.++|..+. +++++|++++ +.+..+| ..|.++++|++|+|++|.|+.+|+ .|.++++|++|+|++|+
T Consensus 39 ~~~~l~~vP~~lp--~~~~~LdLs~-----N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~ 111 (635)
T 4g8a_A 39 MELNFYKIPDNLP--FSTKNLDLSF-----NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 111 (635)
T ss_dssp TTSCCSSCCSSSC--TTCCEEECTT-----SCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred CCCCcCccCCCCC--cCCCEEEeeC-----CCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc
Confidence 3345677886553 4799999995 5567776 468999999999999999998876 58999999999999998
Q ss_pred CccccCc-ccccccccceeecCccCCCcccCC-cCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccccC
Q 038430 389 NLRELPT-GIGKLKNMRSLLNGLTCSLKYMPI-GISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIEG 463 (677)
Q Consensus 389 ~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~ 463 (677)
+..+|. .+.+|++|++|++++|. +..+|. .++++++|++|++.++.... ......+..+++|+.|.+++
T Consensus 112 -l~~l~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~----~~~~~~~~~l~~L~~L~L~~ 182 (635)
T 4g8a_A 112 -IQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQS----FKLPEYFSNLTNLEHLDLSS 182 (635)
T ss_dssp -CCEECGGGGTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCC----CCCCGGGGGCTTCCEEECCS
T ss_pred -CCCCCHHHhcCCCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCcccc----CCCchhhccchhhhhhcccC
Confidence 888886 58999999999999995 556664 58999999999999887653 22334455566666655544
No 70
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.65 E-value=2.8e-16 Score=158.18 Aligned_cols=199 Identities=16% Similarity=0.145 Sum_probs=100.2
Q ss_pred cccEEEeCCCCCCCCCCccCCc-ccCCCCCcCEEEecCccccccch-hhccCCCcCEEEecCCCCccccC-ccccccccc
Q 038430 327 RLRTLLIDDESPPNSSLDKIPE-NVGKLMHLKYLNLSELHIERLPK-TLCELYNLQKLDIRGCRNLRELP-TGIGKLKNM 403 (677)
Q Consensus 327 ~L~~L~l~~~~l~~~~~~~lp~-~~~~l~~L~~L~Ls~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp-~~i~~l~~L 403 (677)
+|++|++++ +.+..++. .+..+++|++|++++|.++.+++ .+.++++|++|++++|. +..++ ..+..+++|
T Consensus 29 ~l~~L~ls~-----n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L 102 (276)
T 2z62_A 29 STKNLDLSF-----NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSL 102 (276)
T ss_dssp TCCEEECTT-----CCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTC
T ss_pred CccEEECCC-----CcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc-cCccChhhhcCCccc
Confidence 456666653 22333332 45555666666666665554443 35556666666666655 33333 345556666
Q ss_pred ceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccccCccCCCChhHHHHhhccCCcc
Q 038430 404 RSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIEGLSNVSHLDEAERLELKNMEN 483 (677)
Q Consensus 404 ~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~ 483 (677)
++|++++|......+..++++++|++|++.++.... ......+..+++|+.|.+++.. +.......+..+.+
T Consensus 103 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----~~l~~~~~~l~~L~~L~Ls~N~----l~~~~~~~~~~l~~ 174 (276)
T 2z62_A 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS----FKLPEYFSNLTNLEHLDLSSNK----IQSIYCTDLRVLHQ 174 (276)
T ss_dssp CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCC----CCCCGGGGGCTTCCEEECCSSC----CCEECGGGGHHHHT
T ss_pred cEEECCCCCccccCchhcccCCCCCEEECcCCccce----ecCchhhccCCCCCEEECCCCC----CCcCCHHHhhhhhh
Confidence 666666553222222245555556665555544332 1123344455555555554421 11111112222333
Q ss_pred cC----ceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcchhhHHHHhhhcCCCCCCcE
Q 038430 484 LL----HLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKNEKDEQLLEALQPPLNVEK 559 (677)
Q Consensus 484 L~----~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~ 559 (677)
|+ .|++++|.... +........+|+.
T Consensus 175 L~~l~l~L~ls~n~l~~--------------------------------------------------~~~~~~~~~~L~~ 204 (276)
T 2z62_A 175 MPLLNLSLDLSLNPMNF--------------------------------------------------IQPGAFKEIRLKE 204 (276)
T ss_dssp CTTCCEEEECCSSCCCE--------------------------------------------------ECTTSSCSCCEEE
T ss_pred ccccceeeecCCCcccc--------------------------------------------------cCccccCCCcccE
Confidence 33 55555541110 1111122347888
Q ss_pred EEEecCCCCCCChh-HhhccCCCeEEEeCCC
Q 038430 560 LWILFNGGNILPKW-LTSLTNLSDLKLVFCE 589 (677)
Q Consensus 560 L~l~~~~~~~lp~~-~~~l~~L~~L~l~~c~ 589 (677)
|++++|.+..+|.. +..+++|+.|++++|+
T Consensus 205 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 205 LALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp EECCSSCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred EECCCCceeecCHhHhcccccccEEEccCCc
Confidence 88888887777765 3578888888888774
No 71
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.65 E-value=1.6e-15 Score=168.88 Aligned_cols=251 Identities=18% Similarity=0.124 Sum_probs=192.6
Q ss_pred CceEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcCEE
Q 038430 303 GKVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKL 382 (677)
Q Consensus 303 ~~l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L 382 (677)
..++.|+++++.+..+|..+. ++|++|++++ +.+..+|. .+++|++|+|++|.++.+|. .+++|++|
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~-----N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L 106 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPD-----NNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLEL 106 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC--TTCSEEEECS-----CCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEE
T ss_pred CCCcEEEecCCCcCccChhhC--CCCcEEEecC-----CCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEE
Confidence 357899999999999997665 8999999996 44567776 57899999999999999987 78999999
Q ss_pred EecCCCCccccCcccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCccccc
Q 038430 383 DIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIE 462 (677)
Q Consensus 383 ~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~ 462 (677)
++++|. +..+|. .+++|+.|++++| .+..+|.. +++|++|++.++.....+ . .+.+|+.|.+.
T Consensus 107 ~Ls~N~-l~~l~~---~l~~L~~L~L~~N-~l~~lp~~---l~~L~~L~Ls~N~l~~l~------~---~~~~L~~L~L~ 169 (622)
T 3g06_A 107 SIFSNP-LTHLPA---LPSGLCKLWIFGN-QLTSLPVL---PPGLQELSVSDNQLASLP------A---LPSELCKLWAY 169 (622)
T ss_dssp EECSCC-CCCCCC---CCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSSCCSCCC------C---CCTTCCEEECC
T ss_pred ECcCCc-CCCCCC---CCCCcCEEECCCC-CCCcCCCC---CCCCCEEECcCCcCCCcC------C---ccCCCCEEECC
Confidence 999998 888887 6789999999999 56778865 478999999887665311 1 24567777776
Q ss_pred CccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcchh
Q 038430 463 GLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKNE 542 (677)
Q Consensus 463 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (677)
+..- ..++ ..+++|+.|++++|....
T Consensus 170 ~N~l-~~l~-------~~~~~L~~L~Ls~N~l~~---------------------------------------------- 195 (622)
T 3g06_A 170 NNQL-TSLP-------MLPSGLQELSVSDNQLAS---------------------------------------------- 195 (622)
T ss_dssp SSCC-SCCC-------CCCTTCCEEECCSSCCSC----------------------------------------------
T ss_pred CCCC-CCCc-------ccCCCCcEEECCCCCCCC----------------------------------------------
Confidence 6321 2221 346899999999872111
Q ss_pred hHHHHhhhcCCCCCCcEEEEecCCCCCCChhHhhccCCCeEEEeCCCCCCcCCCCCCcc-cceeeccccccceEeCCccc
Q 038430 543 KDEQLLEALQPPLNVEKLWILFNGGNILPKWLTSLTNLSDLKLVFCENCEQLPPLGKLP-LEKLELCHLKSVKRVGNEFL 621 (677)
Q Consensus 543 ~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~~~~l~~l~~l~-L~~L~l~~~~~l~~i~~~~~ 621 (677)
+. ..+++|+.|++++|.+..+|. .+++|+.|++++| .+..+| ..++ |+.|+++++ .++.++
T Consensus 196 ----l~---~~~~~L~~L~L~~N~l~~l~~---~~~~L~~L~Ls~N-~L~~lp--~~l~~L~~L~Ls~N-~L~~lp---- 257 (622)
T 3g06_A 196 ----LP---TLPSELYKLWAYNNRLTSLPA---LPSGLKELIVSGN-RLTSLP--VLPSELKELMVSGN-RLTSLP---- 257 (622)
T ss_dssp ----CC---CCCTTCCEEECCSSCCSSCCC---CCTTCCEEECCSS-CCSCCC--CCCTTCCEEECCSS-CCSCCC----
T ss_pred ----CC---CccchhhEEECcCCcccccCC---CCCCCCEEEccCC-ccCcCC--CCCCcCcEEECCCC-CCCcCC----
Confidence 00 124789999999999998885 3589999999998 777788 5668 999999984 566552
Q ss_pred cCCCCCCCCCCCCCCCcccCCCccceeeecccccCccccccCCccccCCCcccccC
Q 038430 622 EIEESEDDPSSSSSSSSVTAFPKVKSLEIKELEEGNYRITRKENISIIPRLSSLRI 677 (677)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~i 677 (677)
..+++|+.|++++|.-..++ ..+..+|+|++|+|
T Consensus 258 ------------------~~~~~L~~L~Ls~N~L~~lp----~~l~~l~~L~~L~L 291 (622)
T 3g06_A 258 ------------------MLPSGLLSLSVYRNQLTRLP----ESLIHLSSETTVNL 291 (622)
T ss_dssp ------------------CCCTTCCEEECCSSCCCSCC----GGGGGSCTTCEEEC
T ss_pred ------------------cccccCcEEeCCCCCCCcCC----HHHhhccccCEEEe
Confidence 25789999999998656454 23447899998875
No 72
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.64 E-value=1.1e-15 Score=154.78 Aligned_cols=195 Identities=17% Similarity=0.072 Sum_probs=111.7
Q ss_pred CceEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccC-CcccCCCCCcCEEEecCccccccchhhccCCCcCE
Q 038430 303 GKVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKI-PENVGKLMHLKYLNLSELHIERLPKTLCELYNLQK 381 (677)
Q Consensus 303 ~~l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~l-p~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~ 381 (677)
.+++.+++.++++..+|..+. ++++.|++++ +.+..+ |..+..+++|++|++++|.++.+|.. +.+++|++
T Consensus 10 ~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~-----N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~ 81 (290)
T 1p9a_G 10 ASHLEVNCDKRNLTALPPDLP--KDTTILHLSE-----NLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGT 81 (290)
T ss_dssp TTCCEEECTTSCCSSCCSCCC--TTCCEEECTT-----SCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCE
T ss_pred CCccEEECCCCCCCcCCCCCC--CCCCEEEcCC-----CcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCE
Confidence 345566666666666654443 4566666664 222332 34456666666666666666655443 55666666
Q ss_pred EEecCCCCccccCcccccccccceeecCccCCCcccC-CcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCccc
Q 038430 382 LDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMP-IGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCG 460 (677)
Q Consensus 382 L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~ 460 (677)
|++++|. +..+|..+..+++|++|++++|. +..+| ..++.+++|++|++.++....
T Consensus 82 L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~~--------------------- 138 (290)
T 1p9a_G 82 LDLSHNQ-LQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKT--------------------- 138 (290)
T ss_dssp EECCSSC-CSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSCCCC---------------------
T ss_pred EECCCCc-CCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCCCCCc---------------------
Confidence 6666665 55666656666666666666663 33333 335555566655555443321
Q ss_pred ccCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcc
Q 038430 461 IEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRK 540 (677)
Q Consensus 461 i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (677)
.....+..+++|+.|+++.|.....
T Consensus 139 ------------~~~~~~~~l~~L~~L~L~~N~l~~l------------------------------------------- 163 (290)
T 1p9a_G 139 ------------LPPGLLTPTPKLEKLSLANNNLTEL------------------------------------------- 163 (290)
T ss_dssp ------------CCTTTTTTCTTCCEEECTTSCCSCC-------------------------------------------
T ss_pred ------------cChhhcccccCCCEEECCCCcCCcc-------------------------------------------
Confidence 0111234456666666665511110
Q ss_pred hhhHHHHhhhcCCCCCCcEEEEecCCCCCCChhHhhccCCCeEEEeCCC
Q 038430 541 NEKDEQLLEALQPPLNVEKLWILFNGGNILPKWLTSLTNLSDLKLVFCE 589 (677)
Q Consensus 541 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~c~ 589 (677)
....+..+++|+.|+|++|.+..+|.++..+++|+.|+|.+|+
T Consensus 164 ------~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 164 ------PAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp ------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred ------CHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCC
Confidence 0112345678888888888888888888777888888888774
No 73
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.64 E-value=4.1e-16 Score=159.52 Aligned_cols=124 Identities=20% Similarity=0.210 Sum_probs=94.9
Q ss_pred ccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcCEEEecCCCCccccCccccccc
Q 038430 322 IHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKLDIRGCRNLRELPTGIGKLK 401 (677)
Q Consensus 322 ~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~ 401 (677)
...+++|+.|++++ +.+..+| .+..+++|++|++++|.++.+|+ +..+++|++|++++|. +..+| .+..++
T Consensus 37 ~~~l~~L~~L~l~~-----~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~ 107 (308)
T 1h6u_A 37 QADLDGITTLSAFG-----TGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQ 107 (308)
T ss_dssp HHHHHTCCEEECTT-----SCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCT
T ss_pred HHHcCCcCEEEeeC-----CCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCC
Confidence 44578899999985 3455565 57889999999999999998887 9999999999999998 77776 488999
Q ss_pred ccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccccC
Q 038430 402 NMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIEG 463 (677)
Q Consensus 402 ~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~ 463 (677)
+|++|++++|. +..+|. +..+++|++|++.++.... +..+..+++|+.|.+++
T Consensus 108 ~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~-------~~~l~~l~~L~~L~l~~ 160 (308)
T 1h6u_A 108 SIKTLDLTSTQ-ITDVTP-LAGLSNLQVLYLDLNQITN-------ISPLAGLTNLQYLSIGN 160 (308)
T ss_dssp TCCEEECTTSC-CCCCGG-GTTCTTCCEEECCSSCCCC-------CGGGGGCTTCCEEECCS
T ss_pred CCCEEECCCCC-CCCchh-hcCCCCCCEEECCCCccCc-------CccccCCCCccEEEccC
Confidence 99999999994 555654 7888888888887765442 12244555555555544
No 74
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.63 E-value=2.4e-16 Score=161.21 Aligned_cols=125 Identities=18% Similarity=0.262 Sum_probs=102.9
Q ss_pred CCceEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcCE
Q 038430 302 GGKVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQK 381 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~ 381 (677)
..+++.|++.++.+..++ .+..+++|++|++++ +.+..++. +..+++|++|++++|.++.+| .+..+++|++
T Consensus 40 l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~-----n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~ 111 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKD-----NQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKT 111 (308)
T ss_dssp HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCS-----SCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCE
T ss_pred cCCcCEEEeeCCCccCch-hhhccCCCCEEEccC-----CcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCE
Confidence 457889999999888887 688899999999985 44556665 888999999999999988875 6888999999
Q ss_pred EEecCCCCccccCcccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCC
Q 038430 382 LDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGG 438 (677)
Q Consensus 382 L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~ 438 (677)
|++++|. +..+|. +..+++|++|++++|. +..++. ++.+++|+.|++.++...
T Consensus 112 L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~ 164 (308)
T 1h6u_A 112 LDLTSTQ-ITDVTP-LAGLSNLQVLYLDLNQ-ITNISP-LAGLTNLQYLSIGNAQVS 164 (308)
T ss_dssp EECTTSC-CCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSSCCC
T ss_pred EECCCCC-CCCchh-hcCCCCCCEEECCCCc-cCcCcc-ccCCCCccEEEccCCcCC
Confidence 9999998 777776 8899999999999984 555554 788889999988776544
No 75
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.63 E-value=1.3e-15 Score=158.96 Aligned_cols=77 Identities=16% Similarity=0.131 Sum_probs=56.3
Q ss_pred CCCCcEEEEec-CCCCCCChh-HhhccCCCeEEEeCCCCCCcCCCCCCcc-cceeeccccccceEeCCccccCCCCCCCC
Q 038430 554 PLNVEKLWILF-NGGNILPKW-LTSLTNLSDLKLVFCENCEQLPPLGKLP-LEKLELCHLKSVKRVGNEFLEIEESEDDP 630 (677)
Q Consensus 554 ~~~L~~L~l~~-~~~~~lp~~-~~~l~~L~~L~l~~c~~~~~l~~l~~l~-L~~L~l~~~~~l~~i~~~~~~~~~~~~~~ 630 (677)
..+|++|++.+ |.+..+|.. +..+++|++|+|++| .++.+|. +.+. |+.|.+.++++++.++.
T Consensus 176 ~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~-~~~~~L~~L~~l~~~~l~~lP~------------ 241 (350)
T 4ay9_X 176 GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPS-YGLENLKKLRARSTYNLKKLPT------------ 241 (350)
T ss_dssp TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCS-SSCTTCCEEECTTCTTCCCCCC------------
T ss_pred ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccCh-hhhccchHhhhccCCCcCcCCC------------
Confidence 45788888864 666778754 578899999999888 7778875 3355 77777777777776642
Q ss_pred CCCCCCCcccCCCccceeeecc
Q 038430 631 SSSSSSSSVTAFPKVKSLEIKE 652 (677)
Q Consensus 631 ~~~~~~~~~~~~~~L~~L~l~~ 652 (677)
...|++|+.+.+.+
T Consensus 242 --------l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 242 --------LEKLVALMEASLTY 255 (350)
T ss_dssp --------TTTCCSCCEEECSC
T ss_pred --------chhCcChhhCcCCC
Confidence 35688888888864
No 76
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.62 E-value=5.7e-18 Score=183.99 Aligned_cols=179 Identities=14% Similarity=0.018 Sum_probs=85.2
Q ss_pred CceEEEEEEecCCC-----cccccccCCCcccEEEeCCCCCCCCCCcc-CCccc-CCCC----CcCEEEecCcccc----
Q 038430 303 GKVRHLGLKFKGGA-----SFPMSIHGLNRLRTLLIDDESPPNSSLDK-IPENV-GKLM----HLKYLNLSELHIE---- 367 (677)
Q Consensus 303 ~~l~~L~l~~~~~~-----~~p~~~~~l~~L~~L~l~~~~l~~~~~~~-lp~~~-~~l~----~L~~L~Ls~~~i~---- 367 (677)
.+++.|++++|.+. .++..+..+++|++|++++|. +.. .+..+ ..+. +|++|++++|.++
T Consensus 28 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-----l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~ 102 (461)
T 1z7x_W 28 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE-----LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC 102 (461)
T ss_dssp TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC-----CHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGH
T ss_pred CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCc-----CChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHH
Confidence 35666666666654 334555566666666666422 211 11111 1222 4666666666655
Q ss_pred -ccchhhccCCCcCEEEecCCCCccc-cCcccc-----cccccceeecCccCCCc----ccCCcCCCCCCCCccCceeeC
Q 038430 368 -RLPKTLCELYNLQKLDIRGCRNLRE-LPTGIG-----KLKNMRSLLNGLTCSLK----YMPIGISKLTSLRTLDKFAVG 436 (677)
Q Consensus 368 -~lp~~i~~l~~L~~L~L~~~~~l~~-lp~~i~-----~l~~L~~L~l~~~~~~~----~~p~~i~~l~~L~~L~l~~~~ 436 (677)
.+|..+.++++|++|++++|. +.. .+..+. ..++|++|++++|.... .++..+..+++|++|++.++.
T Consensus 103 ~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 181 (461)
T 1z7x_W 103 GVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 181 (461)
T ss_dssp HHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB
T ss_pred HHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC
Confidence 345556666666666666665 321 121111 23456666666663222 123334445566666665544
Q ss_pred CCcCCCCcccccccc-----cCCcCCcccccCccCCCChhHHHHhhccCCcccCceEEEee
Q 038430 437 GGVDGGSTCRLECLK-----NFQLIRKCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFE 492 (677)
Q Consensus 437 ~~~~~~~~~~~~~L~-----~l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 492 (677)
.. ...+..+. ...+|+.|.++++.-...........+..+++|+.|++++|
T Consensus 182 i~-----~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 237 (461)
T 1z7x_W 182 IN-----EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN 237 (461)
T ss_dssp CH-----HHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSS
T ss_pred cc-----hHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCC
Confidence 32 11122221 13355566665543222111223334445566666666655
No 77
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.62 E-value=2.6e-18 Score=186.64 Aligned_cols=333 Identities=16% Similarity=0.052 Sum_probs=193.7
Q ss_pred CCceEEEEEEecCCCccc--ccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccc-cchhh-ccCC
Q 038430 302 GGKVRHLGLKFKGGASFP--MSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIER-LPKTL-CELY 377 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~~~p--~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~-lp~~i-~~l~ 377 (677)
+.+++.|+++++.+...+ ..+..+++|++|++++|.+.......++..+..+++|++|++++|.+.. .+..+ ..+.
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 567899999999886544 3377889999999997433222223567778889999999999999874 23333 3455
Q ss_pred ----CcCEEEecCCCCcc-----ccCcccccccccceeecCccCCCcccCCc-----CCCCCCCCccCceeeCCCcCCCC
Q 038430 378 ----NLQKLDIRGCRNLR-----ELPTGIGKLKNMRSLLNGLTCSLKYMPIG-----ISKLTSLRTLDKFAVGGGVDGGS 443 (677)
Q Consensus 378 ----~L~~L~L~~~~~l~-----~lp~~i~~l~~L~~L~l~~~~~~~~~p~~-----i~~l~~L~~L~l~~~~~~~~~~~ 443 (677)
+|++|++++|. +. .+|..+..+++|++|++++|......+.. .....+|++|++.++...... .
T Consensus 82 ~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~-~ 159 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS-C 159 (461)
T ss_dssp STTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG-H
T ss_pred hCCCceeEEEccCCC-CCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHH-H
Confidence 79999999998 54 56888999999999999999632222222 223567999999887655210 0
Q ss_pred cccccccccCCcCCcccccCccCCCChhHHHHhhcc-----CCcccCceEEEeecCCCCCcccccccccccCCCCCCCCC
Q 038430 444 TCRLECLKNFQLIRKCGIEGLSNVSHLDEAERLELK-----NMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDED 518 (677)
Q Consensus 444 ~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (677)
......+..+++|+.|++++.. +.......+. ..++|+.|++++|.......
T Consensus 160 ~~l~~~l~~~~~L~~L~L~~n~----i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~------------------- 216 (461)
T 1z7x_W 160 EPLASVLRAKPDFKELTVSNND----INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNC------------------- 216 (461)
T ss_dssp HHHHHHHHHCTTCCEEECCSSB----CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHH-------------------
T ss_pred HHHHHHHhhCCCCCEEECcCCC----cchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHH-------------------
Confidence 0124456678899999998853 2222222221 35699999999882211000
Q ss_pred CCcccccCCccccchhhhhhcchh---hHHHHhhhc-CCCCCCcEEEEecCCCCC-----CChhHhhccCCCeEEEeCCC
Q 038430 519 GGYKEEKGGKVVDGEYEERRRKNE---KDEQLLEAL-QPPLNVEKLWILFNGGNI-----LPKWLTSLTNLSDLKLVFCE 589 (677)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l-~~~~~L~~L~l~~~~~~~-----lp~~~~~l~~L~~L~l~~c~ 589 (677)
..+... ................. ....+...+ ..+++|++|++++|.+.. +|..+..+++|++|++++|
T Consensus 217 ~~l~~~-l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n- 294 (461)
T 1z7x_W 217 RDLCGI-VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN- 294 (461)
T ss_dssp HHHHHH-HHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTC-
T ss_pred HHHHHH-HHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCC-
Confidence 000000 00000000000000111 111122222 246778888888877664 5666667788888888877
Q ss_pred CCCc-----CCC--CCCcc-cceeeccccccceEeCCccccCCCCCCCCCCCCCCCcccCCCccceeeeccccc-Cc-cc
Q 038430 590 NCEQ-----LPP--LGKLP-LEKLELCHLKSVKRVGNEFLEIEESEDDPSSSSSSSSVTAFPKVKSLEIKELEE-GN-YR 659 (677)
Q Consensus 590 ~~~~-----l~~--l~~l~-L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~-~~ 659 (677)
.+.. +.. ....+ |+.|++++|. ++..+...+ +.....+++|++|+++++.- .. ..
T Consensus 295 ~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l--------------~~~l~~~~~L~~L~Ls~n~i~~~~~~ 359 (461)
T 1z7x_W 295 ELGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACCSHF--------------SSVLAQNRFLLELQISNNRLEDAGVR 359 (461)
T ss_dssp CCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHH--------------HHHHHHCSSCCEEECCSSBCHHHHHH
T ss_pred CCchHHHHHHHHHhccCCccceeeEcCCCC-CchHHHHHH--------------HHHHhhCCCccEEEccCCccccccHH
Confidence 3321 111 11236 8888888754 332211111 01124568899999988855 21 11
Q ss_pred cccCCccc-cCCCcccccC
Q 038430 660 ITRKENIS-IIPRLSSLRI 677 (677)
Q Consensus 660 ~~~~~~~~-~~p~L~~L~i 677 (677)
... +.+. ..++|++|++
T Consensus 360 ~l~-~~l~~~~~~L~~L~L 377 (461)
T 1z7x_W 360 ELC-QGLGQPGSVLRVLWL 377 (461)
T ss_dssp HHH-HHHTSTTCCCCEEEC
T ss_pred HHH-HHHcCCCCceEEEEC
Confidence 110 1111 2568888765
No 78
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.62 E-value=4e-15 Score=149.18 Aligned_cols=123 Identities=24% Similarity=0.300 Sum_probs=76.2
Q ss_pred eEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCc-ccCCCCCcCEEEecCccccccchh-hccCCCcCEE
Q 038430 305 VRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPE-NVGKLMHLKYLNLSELHIERLPKT-LCELYNLQKL 382 (677)
Q Consensus 305 l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~-~~~~l~~L~~L~Ls~~~i~~lp~~-i~~l~~L~~L 382 (677)
.+.++++++.+..+|..+. ++++.|++++ +.+..+|. .+..+++|++|++++|.++.+|.. +.++++|++|
T Consensus 18 ~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~-----n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L 90 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNIP--ADTKKLDLQS-----NKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETL 90 (270)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCS-----SCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEE
T ss_pred CCEEEccCCCCCccCCCCC--CCCCEEECcC-----CCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEE
Confidence 4466667777766665443 5677777764 33444443 466777777777777777766654 4667777777
Q ss_pred EecCCCCccccCc-ccccccccceeecCccCCCcccC-CcCCCCCCCCccCceeeC
Q 038430 383 DIRGCRNLRELPT-GIGKLKNMRSLLNGLTCSLKYMP-IGISKLTSLRTLDKFAVG 436 (677)
Q Consensus 383 ~L~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~l~~~~ 436 (677)
++++|. +..+|. .+..+++|++|++++|. +..+| ..++.+++|++|++.++.
T Consensus 91 ~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~ 144 (270)
T 2o6q_A 91 WVTDNK-LQALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNE 144 (270)
T ss_dssp ECCSSC-CCCCCTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ECCCCc-CCcCCHhHcccccCCCEEECCCCc-cCeeCHHHhCcCcCCCEEECCCCc
Confidence 777776 555554 35667777777777774 33333 335566666666655443
No 79
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.61 E-value=6.9e-17 Score=167.62 Aligned_cols=124 Identities=19% Similarity=0.119 Sum_probs=87.3
Q ss_pred eEEEEEEecCCCcccccccCC--CcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccc--cchhhccCCCcC
Q 038430 305 VRHLGLKFKGGASFPMSIHGL--NRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIER--LPKTLCELYNLQ 380 (677)
Q Consensus 305 l~~L~l~~~~~~~~p~~~~~l--~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~--lp~~i~~l~~L~ 380 (677)
++.+++.++.+. +..+..+ ++++.|++.+ +.+...+..+..+++|++|++++|.++. +|..+..+++|+
T Consensus 49 ~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~-----n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~ 121 (336)
T 2ast_B 49 WQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPR-----SFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ 121 (336)
T ss_dssp SSEEECTTCBCC--HHHHHHHHHTTCSEEECTT-----CEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCS
T ss_pred heeeccccccCC--HHHHHhhhhccceEEEcCC-----ccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCC
Confidence 456666665543 3445555 7888888885 3344444456678899999999988773 777788889999
Q ss_pred EEEecCCCCccccCcccccccccceeecCccCCCc--ccCCcCCCCCCCCccCceee
Q 038430 381 KLDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLK--YMPIGISKLTSLRTLDKFAV 435 (677)
Q Consensus 381 ~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~--~~p~~i~~l~~L~~L~l~~~ 435 (677)
+|++++|......|..++.+++|++|++++|..+. .+|..+..+++|++|++.++
T Consensus 122 ~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 178 (336)
T 2ast_B 122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC 178 (336)
T ss_dssp EEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred EEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCC
Confidence 99999887444677778888899999998884444 24544566666777666655
No 80
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.61 E-value=1.1e-15 Score=153.92 Aligned_cols=213 Identities=19% Similarity=0.165 Sum_probs=158.5
Q ss_pred CCCCccCCcccCCCCCcCEEEecCccccccch-hhccCCCcCEEEecCCCCccccCc-ccccccccceeecCccCCCccc
Q 038430 340 NSSLDKIPENVGKLMHLKYLNLSELHIERLPK-TLCELYNLQKLDIRGCRNLRELPT-GIGKLKNMRSLLNGLTCSLKYM 417 (677)
Q Consensus 340 ~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~ 417 (677)
+..+..+|..+. ++|++|++++|.++.+++ .+.++++|++|++++|. +..++. .+..+++|++|++++|......
T Consensus 16 ~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 92 (276)
T 2z62_A 16 ELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLA 92 (276)
T ss_dssp TSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred CCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCc-CCccCHHHccCCcCCCEEECCCCccCccC
Confidence 344566777654 589999999999998776 79999999999999998 666654 7899999999999999644444
Q ss_pred CCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccccCccCCCChhHHHHhhccCCcccCceEEEeecCCCC
Q 038430 418 PIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDRE 497 (677)
Q Consensus 418 p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 497 (677)
|..+..+++|++|++.++.... .....+..+++|+.|.+++..-.. . ..+..+..+++|+.|++++|.....
T Consensus 93 ~~~~~~l~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~l~~n~l~~-~--~l~~~~~~l~~L~~L~Ls~N~l~~~ 164 (276)
T 2z62_A 93 LGAFSGLSSLQKLVAVETNLAS-----LENFPIGHLKTLKELNVAHNLIQS-F--KLPEYFSNLTNLEHLDLSSNKIQSI 164 (276)
T ss_dssp TTTTTTCTTCCEEECTTSCCCC-----STTCCCTTCTTCCEEECCSSCCCC-C--CCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred hhhhcCCccccEEECCCCCccc-----cCchhcccCCCCCEEECcCCccce-e--cCchhhccCCCCCEEECCCCCCCcC
Confidence 5679999999999998877653 223347888999999998743211 0 0134577889999999998822110
Q ss_pred CcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcchhhHHHHhhhcCCCCCCc-EEEEecCCCCCCChhHhh
Q 038430 498 DEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKNEKDEQLLEALQPPLNVE-KLWILFNGGNILPKWLTS 576 (677)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~lp~~~~~ 576 (677)
. ......+..++.|. .|++++|.+..+|.....
T Consensus 165 ~----------------------------------------------~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~ 198 (276)
T 2z62_A 165 Y----------------------------------------------CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK 198 (276)
T ss_dssp C----------------------------------------------GGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC
T ss_pred C----------------------------------------------HHHhhhhhhccccceeeecCCCcccccCccccC
Confidence 0 01112222334444 899999999888877666
Q ss_pred ccCCCeEEEeCCCCCCcCCC--CCCcc-cceeecccc
Q 038430 577 LTNLSDLKLVFCENCEQLPP--LGKLP-LEKLELCHL 610 (677)
Q Consensus 577 l~~L~~L~l~~c~~~~~l~~--l~~l~-L~~L~l~~~ 610 (677)
..+|+.|++++| .+..+|. ++.++ |+.|++++.
T Consensus 199 ~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 199 EIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp SCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCSS
T ss_pred CCcccEEECCCC-ceeecCHhHhcccccccEEEccCC
Confidence 679999999999 5767775 68899 999999973
No 81
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.61 E-value=1e-17 Score=177.54 Aligned_cols=187 Identities=19% Similarity=0.110 Sum_probs=80.6
Q ss_pred ceEEEEEEecCCCc-----ccccccCCCcccEEEeCCCCCCCCCCccCCccc-------CCCCCcCEEEecCccccc---
Q 038430 304 KVRHLGLKFKGGAS-----FPMSIHGLNRLRTLLIDDESPPNSSLDKIPENV-------GKLMHLKYLNLSELHIER--- 368 (677)
Q Consensus 304 ~l~~L~l~~~~~~~-----~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~-------~~l~~L~~L~Ls~~~i~~--- 368 (677)
.++.|++++|.+.. ++..+..+++|++|+++++.+ +.....+|..+ ..+++|++|+|++|.++.
T Consensus 33 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~-~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 111 (386)
T 2ca6_A 33 SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFT-GRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111 (386)
T ss_dssp CCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCT-TSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred CccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCccccc-CccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence 45555555554432 223344555566666554211 01111223222 455566666666665553
Q ss_pred --cchhhccCCCcCEEEecCCCCcc----ccCcccccc---------cccceeecCccCCC-cccC---CcCCCCCCCCc
Q 038430 369 --LPKTLCELYNLQKLDIRGCRNLR----ELPTGIGKL---------KNMRSLLNGLTCSL-KYMP---IGISKLTSLRT 429 (677)
Q Consensus 369 --lp~~i~~l~~L~~L~L~~~~~l~----~lp~~i~~l---------~~L~~L~l~~~~~~-~~~p---~~i~~l~~L~~ 429 (677)
+|..+..+++|++|+|++|.... .++..+..+ ++|++|++++|... ..+| ..+..+++|++
T Consensus 112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 191 (386)
T 2ca6_A 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT 191 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCE
Confidence 45555555666666666555211 122222233 55666666555322 1222 23444555555
Q ss_pred cCceeeCCCcCCCCccccc-ccccCCcCCcccccCccCCCChhHHHHhhccCCcccCceEEEee
Q 038430 430 LDKFAVGGGVDGGSTCRLE-CLKNFQLIRKCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFE 492 (677)
Q Consensus 430 L~l~~~~~~~~~~~~~~~~-~L~~l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 492 (677)
|++.++...... ...... .+..+++|+.|.++++.-........+..+..+++|+.|+|++|
T Consensus 192 L~L~~n~l~~~g-~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n 254 (386)
T 2ca6_A 192 VKMVQNGIRPEG-IEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC 254 (386)
T ss_dssp EECCSSCCCHHH-HHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTC
T ss_pred EECcCCCCCHhH-HHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCC
Confidence 555544432100 000111 44455555555555421000000222333445555555555544
No 82
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.59 E-value=1e-15 Score=150.55 Aligned_cols=202 Identities=17% Similarity=0.162 Sum_probs=127.4
Q ss_pred CCCcccccccCCCcccEEEeCCCCCCCCCCccCCc-ccCCCCCcCEEEecCcc-ccccch-hhccCCCcCEEEecC-CCC
Q 038430 314 GGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPE-NVGKLMHLKYLNLSELH-IERLPK-TLCELYNLQKLDIRG-CRN 389 (677)
Q Consensus 314 ~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~-~~~~l~~L~~L~Ls~~~-i~~lp~-~i~~l~~L~~L~L~~-~~~ 389 (677)
.+..+|. + .++|++|++++ +.+..+|. .++.+++|++|++++|. ++.+|+ .+.++++|++|++++ |.
T Consensus 22 ~l~~ip~-~--~~~l~~L~l~~-----n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~- 92 (239)
T 2xwt_C 22 DIQRIPS-L--PPSTQTLKLIE-----THLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN- 92 (239)
T ss_dssp SCSSCCC-C--CTTCCEEEEES-----CCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETT-
T ss_pred CccccCC-C--CCcccEEEEeC-----CcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCC-
Confidence 3566665 3 23677777774 34455554 46777777777777776 776655 567777777777777 44
Q ss_pred ccccCc-ccccccccceeecCccCCCcccCCcCCCCCCCC---ccCceee-CCCcCCCCcccccccccCCcCCcccccCc
Q 038430 390 LRELPT-GIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLR---TLDKFAV-GGGVDGGSTCRLECLKNFQLIRKCGIEGL 464 (677)
Q Consensus 390 l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~---~L~l~~~-~~~~~~~~~~~~~~L~~l~~L~~L~i~~~ 464 (677)
+..+|. .+..+++|++|++++|. +..+|. ++.+.+|+ +|++.++ ....
T Consensus 93 l~~i~~~~f~~l~~L~~L~l~~n~-l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~------------------------- 145 (239)
T 2xwt_C 93 LTYIDPDALKELPLLKFLGIFNTG-LKMFPD-LTKVYSTDIFFILEITDNPYMTS------------------------- 145 (239)
T ss_dssp CCEECTTSEECCTTCCEEEEEEEC-CCSCCC-CTTCCBCCSEEEEEEESCTTCCE-------------------------
T ss_pred eeEcCHHHhCCCCCCCEEeCCCCC-Cccccc-cccccccccccEEECCCCcchhh-------------------------
Confidence 666653 56777777777777773 445665 66666665 5555444 2211
Q ss_pred cCCCChhHHHHhhccCCcccC-ceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcchhh
Q 038430 465 SNVSHLDEAERLELKNMENLL-HLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKNEK 543 (677)
Q Consensus 465 ~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (677)
.....+.++++|+ .|++++|....
T Consensus 146 --------i~~~~~~~l~~L~~~L~l~~n~l~~----------------------------------------------- 170 (239)
T 2xwt_C 146 --------IPVNAFQGLCNETLTLKLYNNGFTS----------------------------------------------- 170 (239)
T ss_dssp --------ECTTTTTTTBSSEEEEECCSCCCCE-----------------------------------------------
T ss_pred --------cCcccccchhcceeEEEcCCCCCcc-----------------------------------------------
Confidence 1112244566677 77776551110
Q ss_pred HHHHh-hhcCCCCCCcEEEEecCC-CCCCCh-hHhhc-cCCCeEEEeCCCCCCcCCCCCCcc-cceeecccccc
Q 038430 544 DEQLL-EALQPPLNVEKLWILFNG-GNILPK-WLTSL-TNLSDLKLVFCENCEQLPPLGKLP-LEKLELCHLKS 612 (677)
Q Consensus 544 ~~~~~-~~l~~~~~L~~L~l~~~~-~~~lp~-~~~~l-~~L~~L~l~~c~~~~~l~~l~~l~-L~~L~l~~~~~ 612 (677)
+. ..+.. ++|++|++++|. +..+|. .+..+ ++|+.|++++| .+..+|.. .++ |+.|++.++..
T Consensus 171 ---i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l~~l~~~-~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 171 ---VQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTALPSK-GLEHLKELIARNTWT 238 (239)
T ss_dssp ---ECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC-CCCCCCCT-TCTTCSEEECTTC--
T ss_pred ---cCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC-ccccCChh-HhccCceeeccCccC
Confidence 11 11222 688999999984 777754 46678 89999999987 66677754 677 99999887543
No 83
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.59 E-value=7.7e-15 Score=147.07 Aligned_cols=192 Identities=22% Similarity=0.274 Sum_probs=130.9
Q ss_pred cccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccch-hhccCCCcCEEEecCCCCccccCcc-cccccccc
Q 038430 327 RLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPK-TLCELYNLQKLDIRGCRNLRELPTG-IGKLKNMR 404 (677)
Q Consensus 327 ~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~-i~~l~~L~ 404 (677)
..++++++ +..+..+|..+. .+|+.|++++|.++.+|+ .+.++++|++|++++|. +..+|.. +..+++|+
T Consensus 17 ~~~~l~~~-----~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~ 88 (270)
T 2o6q_A 17 NKNSVDCS-----SKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLE 88 (270)
T ss_dssp TTTEEECT-----TSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCC
T ss_pred CCCEEEcc-----CCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCC
Confidence 57888888 455667887654 689999999999998876 68999999999999998 7778765 57899999
Q ss_pred eeecCccCCCcccCC-cCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccccCccCCCChhHHHHhhccCCcc
Q 038430 405 SLLNGLTCSLKYMPI-GISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIEGLSNVSHLDEAERLELKNMEN 483 (677)
Q Consensus 405 ~L~l~~~~~~~~~p~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~ 483 (677)
+|++++|. +..+|. .+..+++|++|++.++.... .....+ ..+++
T Consensus 89 ~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~-----~~~~~~----------------------------~~l~~ 134 (270)
T 2o6q_A 89 TLWVTDNK-LQALPIGVFDQLVNLAELRLDRNQLKS-----LPPRVF----------------------------DSLTK 134 (270)
T ss_dssp EEECCSSC-CCCCCTTTTTTCSSCCEEECCSSCCCC-----CCTTTT----------------------------TTCTT
T ss_pred EEECCCCc-CCcCCHhHcccccCCCEEECCCCccCe-----eCHHHh----------------------------CcCcC
Confidence 99999994 555554 46788888888887665442 112223 33455
Q ss_pred cCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcchhhHHHHhhhcCCCCCCcEEEEe
Q 038430 484 LLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKNEKDEQLLEALQPPLNVEKLWIL 563 (677)
Q Consensus 484 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 563 (677)
|+.|++++|..... ....+..+++|+.|+++
T Consensus 135 L~~L~Ls~n~l~~~-------------------------------------------------~~~~~~~l~~L~~L~L~ 165 (270)
T 2o6q_A 135 LTYLSLGYNELQSL-------------------------------------------------PKGVFDKLTSLKELRLY 165 (270)
T ss_dssp CCEEECCSSCCCCC-------------------------------------------------CTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCcCCcc-------------------------------------------------CHhHccCCcccceeEec
Confidence 55555554411110 00123445677777777
Q ss_pred cCCCCCCChh-HhhccCCCeEEEeCCCCCCcCCC--CCCcc-cceeecccc
Q 038430 564 FNGGNILPKW-LTSLTNLSDLKLVFCENCEQLPP--LGKLP-LEKLELCHL 610 (677)
Q Consensus 564 ~~~~~~lp~~-~~~l~~L~~L~l~~c~~~~~l~~--l~~l~-L~~L~l~~~ 610 (677)
+|.+..+|.. +..+++|++|++++| .+..+|. +..++ |+.|+++++
T Consensus 166 ~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 166 NNQLKRVPEGAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCcCcEeChhHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCC
Confidence 7776666543 556777777777776 4555554 56677 777777663
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.59 E-value=6.3e-15 Score=150.90 Aligned_cols=223 Identities=16% Similarity=0.095 Sum_probs=138.4
Q ss_pred ceEEEEEEecCCCc--cc--ccccCCCcccEEEeCCCCCCCCCCccCCccc--CCCCCcCEEEecCccccc-cc----hh
Q 038430 304 KVRHLGLKFKGGAS--FP--MSIHGLNRLRTLLIDDESPPNSSLDKIPENV--GKLMHLKYLNLSELHIER-LP----KT 372 (677)
Q Consensus 304 ~l~~L~l~~~~~~~--~p--~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~--~~l~~L~~L~Ls~~~i~~-lp----~~ 372 (677)
.++.+.+....+.. +. ..+..+++|++|++++ +......|..+ +.+++|++|++++|.++. .| ..
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~----n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~ 140 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLED----LKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQ 140 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEES----CCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHH
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeC----CEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHH
Confidence 45566666554421 11 0122345578888875 33334455555 677788888888887763 22 23
Q ss_pred hccCCCcCEEEecCCCCccccCcccccccccceeecCccCCCcc--cC--CcCCCCCCCCccCceeeCCCcCCCCccccc
Q 038430 373 LCELYNLQKLDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKY--MP--IGISKLTSLRTLDKFAVGGGVDGGSTCRLE 448 (677)
Q Consensus 373 i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~--~p--~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~ 448 (677)
+..+++|++|++++|......|..++.+++|++|++++|...+. ++ ..++.+++|++|++.++...
T Consensus 141 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~---------- 210 (310)
T 4glp_A 141 QWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME---------- 210 (310)
T ss_dssp TTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC----------
T ss_pred hhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC----------
Confidence 45677888888887773333345677778888888887753321 22 22345666666665544321
Q ss_pred ccccCCcCCcccccCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCc
Q 038430 449 CLKNFQLIRKCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGK 528 (677)
Q Consensus 449 ~L~~l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (677)
..+......+..+++|+.|++++|......|
T Consensus 211 --------------------~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p----------------------------- 241 (310)
T 4glp_A 211 --------------------TPTGVCAALAAAGVQPHSLDLSHNSLRATVN----------------------------- 241 (310)
T ss_dssp --------------------CHHHHHHHHHHHTCCCSSEECTTSCCCCCCC-----------------------------
T ss_pred --------------------chHHHHHHHHhcCCCCCEEECCCCCCCccch-----------------------------
Confidence 2222222224567888888888772221100
Q ss_pred cccchhhhhhcchhhHHHHhhhcCCCCCCcEEEEecCCCCCCChhHhhccCCCeEEEeCCCCCCcCCCCCCcc-cceeec
Q 038430 529 VVDGEYEERRRKNEKDEQLLEALQPPLNVEKLWILFNGGNILPKWLTSLTNLSDLKLVFCENCEQLPPLGKLP-LEKLEL 607 (677)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~~~~l~~l~~l~-L~~L~l 607 (677)
.....+..+++|++|+|++|.+..+|..+. ++|++|+|++| .+..+|.+..++ |+.|++
T Consensus 242 -----------------~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N-~l~~~~~~~~l~~L~~L~L 301 (310)
T 4glp_A 242 -----------------PSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSN-RLNRAPQPDELPEVDNLTL 301 (310)
T ss_dssp -----------------SCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSC-CCCSCCCTTSCCCCSCEEC
T ss_pred -----------------hhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCC-cCCCCchhhhCCCccEEEC
Confidence 001122334799999999999999998764 89999999999 777778888899 999999
Q ss_pred cc
Q 038430 608 CH 609 (677)
Q Consensus 608 ~~ 609 (677)
++
T Consensus 302 ~~ 303 (310)
T 4glp_A 302 DG 303 (310)
T ss_dssp SS
T ss_pred cC
Confidence 87
No 85
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.59 E-value=4e-15 Score=146.27 Aligned_cols=198 Identities=16% Similarity=0.114 Sum_probs=150.7
Q ss_pred CCCceEEEEEEecCCCcccc-cccCCCcccEEEeCCCCCCCCCCccCCc-ccCCCCCcCEEEecC-ccccccch-hhccC
Q 038430 301 FGGKVRHLGLKFKGGASFPM-SIHGLNRLRTLLIDDESPPNSSLDKIPE-NVGKLMHLKYLNLSE-LHIERLPK-TLCEL 376 (677)
Q Consensus 301 ~~~~l~~L~l~~~~~~~~p~-~~~~l~~L~~L~l~~~~l~~~~~~~lp~-~~~~l~~L~~L~Ls~-~~i~~lp~-~i~~l 376 (677)
++..++.|+++++.+..+|. .+..+++|++|++++ +..+..+|. .+..+++|++|++++ |.++.+|+ .+.++
T Consensus 29 ~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~----n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l 104 (239)
T 2xwt_C 29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSI----DVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKEL 104 (239)
T ss_dssp CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEEC----CSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECC
T ss_pred CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCC----CCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCC
Confidence 57799999999999998875 788999999999996 333666765 688999999999999 88998875 58899
Q ss_pred CCcCEEEecCCCCccccCcccccccccc---eeecCccCCCcccCC-cCCCCCCCC-ccCceeeCCCcCCCCcccccccc
Q 038430 377 YNLQKLDIRGCRNLRELPTGIGKLKNMR---SLLNGLTCSLKYMPI-GISKLTSLR-TLDKFAVGGGVDGGSTCRLECLK 451 (677)
Q Consensus 377 ~~L~~L~L~~~~~l~~lp~~i~~l~~L~---~L~l~~~~~~~~~p~-~i~~l~~L~-~L~l~~~~~~~~~~~~~~~~~L~ 451 (677)
++|++|++++|. +..+|. ++.+++|+ +|++++|..+..+|. .+..+++|+ +|++.++.....+ ...
T Consensus 105 ~~L~~L~l~~n~-l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~-----~~~-- 175 (239)
T 2xwt_C 105 PLLKFLGIFNTG-LKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQ-----GYA-- 175 (239)
T ss_dssp TTCCEEEEEEEC-CCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEEC-----TTT--
T ss_pred CCCCEEeCCCCC-Cccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccC-----Hhh--
Confidence 999999999998 778998 88888888 999999955666665 488899999 8888766543210 000
Q ss_pred cCCcCCcccccCccCCCChhHHHHhhccCCcccCceEEEeec-CCCCCcccccccccccCCCCCCCCCCCcccccCCccc
Q 038430 452 NFQLIRKCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFEV-VDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVV 530 (677)
Q Consensus 452 ~l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (677)
+.. ++|+.|+++.|. ...
T Consensus 176 --------------------------~~~-~~L~~L~L~~n~~l~~---------------------------------- 194 (239)
T 2xwt_C 176 --------------------------FNG-TKLDAVYLNKNKYLTV---------------------------------- 194 (239)
T ss_dssp --------------------------TTT-CEEEEEECTTCTTCCE----------------------------------
T ss_pred --------------------------cCC-CCCCEEEcCCCCCccc----------------------------------
Confidence 111 355566665441 100
Q ss_pred cchhhhhhcchhhHHHHhhhcCCC-CCCcEEEEecCCCCCCChhHhhccCCCeEEEeCCC
Q 038430 531 DGEYEERRRKNEKDEQLLEALQPP-LNVEKLWILFNGGNILPKWLTSLTNLSDLKLVFCE 589 (677)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~c~ 589 (677)
.....+..+ ++|+.|++++|.+..+|.. .+++|+.|++.++.
T Consensus 195 ---------------i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 195 ---------------IDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp ---------------ECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC-
T ss_pred ---------------CCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCcc
Confidence 001234556 8899999999999989875 78999999998874
No 86
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.58 E-value=2.4e-15 Score=152.26 Aligned_cols=131 Identities=25% Similarity=0.257 Sum_probs=110.6
Q ss_pred cCCCceEEEEEEecCCCccc-ccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCC
Q 038430 300 AFGGKVRHLGLKFKGGASFP-MSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYN 378 (677)
Q Consensus 300 ~~~~~l~~L~l~~~~~~~~p-~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~ 378 (677)
.++..++.|++++|.+..++ ..+..+++|++|++++ +.+..++.. +.+++|++|++++|.++.+|..+..+++
T Consensus 28 ~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-----n~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~ 101 (290)
T 1p9a_G 28 DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR-----AELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPA 101 (290)
T ss_dssp CCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTT-----SCCCEEECC-SCCTTCCEEECCSSCCSSCCCCTTTCTT
T ss_pred CCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCC-----CccCcccCC-CCCCcCCEEECCCCcCCcCchhhccCCC
Confidence 44678999999999998775 6799999999999995 445556543 7899999999999999999999999999
Q ss_pred cCEEEecCCCCccccC-cccccccccceeecCccCCCcccCCc-CCCCCCCCccCceeeCCC
Q 038430 379 LQKLDIRGCRNLRELP-TGIGKLKNMRSLLNGLTCSLKYMPIG-ISKLTSLRTLDKFAVGGG 438 (677)
Q Consensus 379 L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L~l~~~~~~ 438 (677)
|++|++++|. +..+| ..+..+++|++|++++|. +..+|.. +..+++|+.|++.++...
T Consensus 102 L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 161 (290)
T 1p9a_G 102 LTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNLT 161 (290)
T ss_dssp CCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred CCEEECCCCc-CcccCHHHHcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCCCcCC
Confidence 9999999998 77776 568999999999999994 5566654 678899999988766544
No 87
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.58 E-value=3.8e-16 Score=162.03 Aligned_cols=225 Identities=14% Similarity=0.094 Sum_probs=168.7
Q ss_pred cccEEEeCCCCCCCCCCccCCcccCCC--CCcCEEEecCccccccchhhccCCCcCEEEecCCCCccc-cCccccccccc
Q 038430 327 RLRTLLIDDESPPNSSLDKIPENVGKL--MHLKYLNLSELHIERLPKTLCELYNLQKLDIRGCRNLRE-LPTGIGKLKNM 403 (677)
Q Consensus 327 ~L~~L~l~~~~l~~~~~~~lp~~~~~l--~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~-lp~~i~~l~~L 403 (677)
.++.++++++. +. |..+..+ .+++.|+++++.+...++.+..+++|++|++++|..... +|..+..+++|
T Consensus 48 ~~~~l~l~~~~-----~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L 120 (336)
T 2ast_B 48 LWQTLDLTGKN-----LH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKL 120 (336)
T ss_dssp TSSEEECTTCB-----CC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCC
T ss_pred hheeecccccc-----CC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCC
Confidence 47889998632 22 4455666 899999999999987777788899999999999983333 78889999999
Q ss_pred ceeecCccCCCcccCCcCCCCCCCCccCceeeC-CCcCCCCcccccccccCCcCCcccccCccCCCChhHHHHhhccCCc
Q 038430 404 RSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVG-GGVDGGSTCRLECLKNFQLIRKCGIEGLSNVSHLDEAERLELKNME 482 (677)
Q Consensus 404 ~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~ 482 (677)
++|++++|......|..++.+++|++|++.++. ... ......+..+++|+.|.++++..+.. ......+..++
T Consensus 121 ~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~----~~l~~~~~~~~~L~~L~l~~~~~l~~--~~~~~~~~~l~ 194 (336)
T 2ast_B 121 QNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSE----FALQTLLSSCSRLDELNLSWCFDFTE--KHVQVAVAHVS 194 (336)
T ss_dssp SEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCH----HHHHHHHHHCTTCCEEECCCCTTCCH--HHHHHHHHHSC
T ss_pred CEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCH----HHHHHHHhcCCCCCEEcCCCCCCcCh--HHHHHHHHhcc
Confidence 999999996555677788899999999998873 331 12344477899999999998644432 12344567788
Q ss_pred -ccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcchhhHHHHhhhcCCCCCCcEEE
Q 038430 483 -NLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKNEKDEQLLEALQPPLNVEKLW 561 (677)
Q Consensus 483 -~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 561 (677)
+|+.|++++|.. ......+...+..+++|+.|+
T Consensus 195 ~~L~~L~l~~~~~----------------------------------------------~~~~~~l~~~~~~~~~L~~L~ 228 (336)
T 2ast_B 195 ETITQLNLSGYRK----------------------------------------------NLQKSDLSTLVRRCPNLVHLD 228 (336)
T ss_dssp TTCCEEECCSCGG----------------------------------------------GSCHHHHHHHHHHCTTCSEEE
T ss_pred cCCCEEEeCCCcc----------------------------------------------cCCHHHHHHHHhhCCCCCEEe
Confidence 999999998710 112234444555678999999
Q ss_pred EecCC-CC-CCChhHhhccCCCeEEEeCCCCCC--cCCCCCCcc-cceeecccc
Q 038430 562 ILFNG-GN-ILPKWLTSLTNLSDLKLVFCENCE--QLPPLGKLP-LEKLELCHL 610 (677)
Q Consensus 562 l~~~~-~~-~lp~~~~~l~~L~~L~l~~c~~~~--~l~~l~~l~-L~~L~l~~~ 610 (677)
+++|. +. ..+..+..+++|++|++++|..+. .+..++.+| |+.|++++|
T Consensus 229 l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 229 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 99998 43 456678899999999999996432 233477899 999999987
No 88
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.58 E-value=1.9e-16 Score=177.69 Aligned_cols=133 Identities=14% Similarity=0.011 Sum_probs=60.6
Q ss_pred CceEEEEEEecCCCc-----ccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCC
Q 038430 303 GKVRHLGLKFKGGAS-----FPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELY 377 (677)
Q Consensus 303 ~~l~~L~l~~~~~~~-----~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~ 377 (677)
.+++.|++.+|.+.. ++.....+++|++|+++++.+.......++..+.++++|++|++++|.+..+|..+.+++
T Consensus 164 ~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~ 243 (592)
T 3ogk_B 164 RKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAA 243 (592)
T ss_dssp TTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCT
T ss_pred CCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhh
Confidence 445555555553311 222233455555555554322111112233334455566666666655555555555556
Q ss_pred CcCEEEecCCCCc---cccCcccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeC
Q 038430 378 NLQKLDIRGCRNL---RELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVG 436 (677)
Q Consensus 378 ~L~~L~L~~~~~l---~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~ 436 (677)
+|+.|+++.+... ...+..+..+++|+.|+++++ ....+|..+..+++|++|++.++.
T Consensus 244 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~ 304 (592)
T 3ogk_B 244 NLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYAL 304 (592)
T ss_dssp TCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCC
T ss_pred HHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHhhcCCCcEEecCCCc
Confidence 6666655532211 122223444444555544443 233344444455555555555444
No 89
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.57 E-value=4.9e-16 Score=164.52 Aligned_cols=248 Identities=14% Similarity=0.075 Sum_probs=175.4
Q ss_pred CCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCcccc----ccchhh-------ccCCCcCEE
Q 038430 314 GGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIE----RLPKTL-------CELYNLQKL 382 (677)
Q Consensus 314 ~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~----~lp~~i-------~~l~~L~~L 382 (677)
++..++..+..+++|++|++++|.+.......++..+..+++|++|+|++|.+. .+|..+ ..+++|++|
T Consensus 20 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L 99 (386)
T 2ca6_A 20 DEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTV 99 (386)
T ss_dssp HHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEE
T ss_pred HHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEE
Confidence 345567778889999999999743322222234455778999999999998654 345554 789999999
Q ss_pred EecCCCCcc----ccCcccccccccceeecCccCCCcc----cCCcCCCC---------CCCCccCceeeCCCcCCCCcc
Q 038430 383 DIRGCRNLR----ELPTGIGKLKNMRSLLNGLTCSLKY----MPIGISKL---------TSLRTLDKFAVGGGVDGGSTC 445 (677)
Q Consensus 383 ~L~~~~~l~----~lp~~i~~l~~L~~L~l~~~~~~~~----~p~~i~~l---------~~L~~L~l~~~~~~~~~~~~~ 445 (677)
+|++|.... .+|..+..+++|++|++++|..... ++..+..+ ++|++|++.++.... ..
T Consensus 100 ~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~----~~ 175 (386)
T 2ca6_A 100 RLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN----GS 175 (386)
T ss_dssp ECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG----GG
T ss_pred ECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc----HH
Confidence 999998333 3788899999999999999964222 23334444 899999998887652 11
Q ss_pred cc---cccccCCcCCcccccCccCCC-ChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCc
Q 038430 446 RL---ECLKNFQLIRKCGIEGLSNVS-HLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGY 521 (677)
Q Consensus 446 ~~---~~L~~l~~L~~L~i~~~~~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (677)
.. ..+..+++|+.|.++++.-.. .........+..+++|+.|+|++|..
T Consensus 176 ~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l--------------------------- 228 (386)
T 2ca6_A 176 MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF--------------------------- 228 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCC---------------------------
T ss_pred HHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCC---------------------------
Confidence 12 467788899999998853211 01112233788899999999998811
Q ss_pred ccccCCccccchhhhhhcchhhHHHHhhhcCCCCCCcEEEEecCCCCC-----CChhHhh--ccCCCeEEEeCCCCCCc-
Q 038430 522 KEEKGGKVVDGEYEERRRKNEKDEQLLEALQPPLNVEKLWILFNGGNI-----LPKWLTS--LTNLSDLKLVFCENCEQ- 593 (677)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-----lp~~~~~--l~~L~~L~l~~c~~~~~- 593 (677)
.......++..+..+++|+.|+|++|.+.. +|.++.. +++|++|+|++| .+..
T Consensus 229 ------------------~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n-~i~~~ 289 (386)
T 2ca6_A 229 ------------------THLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYN-EIELD 289 (386)
T ss_dssp ------------------HHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSS-CCBHH
T ss_pred ------------------CcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCC-cCCHH
Confidence 011124456677788999999999998764 3566643 899999999999 4544
Q ss_pred ----CCC-C-CCcc-cceeeccccc
Q 038430 594 ----LPP-L-GKLP-LEKLELCHLK 611 (677)
Q Consensus 594 ----l~~-l-~~l~-L~~L~l~~~~ 611 (677)
+|. + .++| |+.|++++|+
T Consensus 290 g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 290 AVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred HHHHHHHHHHhcCCCceEEEccCCc
Confidence 664 3 5689 9999999853
No 90
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.57 E-value=1.5e-15 Score=152.33 Aligned_cols=128 Identities=27% Similarity=0.308 Sum_probs=95.3
Q ss_pred CCceEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchh-hccCCCcC
Q 038430 302 GGKVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKT-LCELYNLQ 380 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~-i~~l~~L~ 380 (677)
..+++.|.+.++.+..++ .+..+++|++|++++| .+..+ ..++.+++|++|++++|.++.+|+. ++++++|+
T Consensus 40 l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n-----~l~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGN-----KLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTS-----CCCCC-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred ccceeeeeeCCCCccccc-ccccCCCCcEEECCCC-----CCCCc-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 457788888888887766 5777888888888863 33344 3678888889999988888877654 68888899
Q ss_pred EEEecCCCCccccCc-ccccccccceeecCccCCCcccCCc-CCCCCCCCccCceeeCCC
Q 038430 381 KLDIRGCRNLRELPT-GIGKLKNMRSLLNGLTCSLKYMPIG-ISKLTSLRTLDKFAVGGG 438 (677)
Q Consensus 381 ~L~L~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L~l~~~~~~ 438 (677)
+|++++|. +..+|. .++.+++|++|++++|. +..+|.. ++.+++|++|++.++...
T Consensus 113 ~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~ 170 (272)
T 3rfs_A 113 ELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQLQ 170 (272)
T ss_dssp EEECTTSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred EEECCCCc-CCccCHHHhccCCCCCEEECCCCc-cCccCHHHhccCccCCEEECCCCCcC
Confidence 99998888 555554 46888888888888884 4455543 577888888877766543
No 91
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.54 E-value=5.6e-16 Score=173.94 Aligned_cols=110 Identities=18% Similarity=0.140 Sum_probs=71.0
Q ss_pred CCceEEEEEEec-CCCc--ccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCcc--cc--ccchhhc
Q 038430 302 GGKVRHLGLKFK-GGAS--FPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELH--IE--RLPKTLC 374 (677)
Q Consensus 302 ~~~l~~L~l~~~-~~~~--~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~--i~--~lp~~i~ 374 (677)
..+++.|++.+| .+.. ++.....+++|++|++++|.+.......++.....+++|++|++++|. +. .++..+.
T Consensus 129 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~ 208 (594)
T 2p1m_B 129 FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVT 208 (594)
T ss_dssp CTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHH
T ss_pred CCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHH
Confidence 357788888776 3332 444445678888888886443222323343334567788888888876 32 2333345
Q ss_pred cCCCcCEEEecCCCCccccCcccccccccceeecCcc
Q 038430 375 ELYNLQKLDIRGCRNLRELPTGIGKLKNMRSLLNGLT 411 (677)
Q Consensus 375 ~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~ 411 (677)
++++|++|++++|..+..+|..+..+++|++|+++.+
T Consensus 209 ~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 209 RCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGY 245 (594)
T ss_dssp HCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBC
T ss_pred hCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccc
Confidence 6788888888888656667777777788888876554
No 92
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.53 E-value=1.1e-14 Score=146.06 Aligned_cols=193 Identities=21% Similarity=0.232 Sum_probs=136.2
Q ss_pred cccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcCEEEecCCCCccccCc-cccc
Q 038430 321 SIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKLDIRGCRNLRELPT-GIGK 399 (677)
Q Consensus 321 ~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~-~i~~ 399 (677)
....+++|+.|.+.+ +.+..++ .++.+++|++|++++|.++.++ .++++++|++|++++|. +..+|. .++.
T Consensus 36 ~~~~l~~L~~L~l~~-----~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~-l~~~~~~~~~~ 107 (272)
T 3rfs_A 36 TQNELNSIDQIIANN-----SDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQ-LQSLPNGVFDK 107 (272)
T ss_dssp CHHHHTTCCEEECTT-----SCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSC-CCCCCTTTTTT
T ss_pred ccccccceeeeeeCC-----CCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCc-cCccChhHhcC
Confidence 455678899999985 3445554 4788999999999999988864 78899999999999998 666665 4688
Q ss_pred ccccceeecCccCCCcccCC-cCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccccCccCCCChhHHHHhhc
Q 038430 400 LKNMRSLLNGLTCSLKYMPI-GISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIEGLSNVSHLDEAERLEL 478 (677)
Q Consensus 400 l~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~l 478 (677)
+++|++|++++|. +..+|. .++.+++|++|++.++.... ..... +
T Consensus 108 l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~-----~~~~~----------------------------~ 153 (272)
T 3rfs_A 108 LTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHNQLQS-----LPKGV----------------------------F 153 (272)
T ss_dssp CTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCC-----CCTTT----------------------------T
T ss_pred CcCCCEEECCCCc-CCccCHHHhccCCCCCEEECCCCccCc-----cCHHH----------------------------h
Confidence 9999999999995 445554 47888888888887665432 11111 3
Q ss_pred cCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcchhhHHHHhhhcCCCCCCc
Q 038430 479 KNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKNEKDEQLLEALQPPLNVE 558 (677)
Q Consensus 479 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~ 558 (677)
..+++|+.|++++|.... .....+..+++|+
T Consensus 154 ~~l~~L~~L~l~~n~l~~-------------------------------------------------~~~~~~~~l~~L~ 184 (272)
T 3rfs_A 154 DKLTNLTELDLSYNQLQS-------------------------------------------------LPEGVFDKLTQLK 184 (272)
T ss_dssp TTCTTCCEEECCSSCCCC-------------------------------------------------CCTTTTTTCTTCC
T ss_pred ccCccCCEEECCCCCcCc-------------------------------------------------cCHHHhcCCccCC
Confidence 345566666666551111 0012245668889
Q ss_pred EEEEecCCCCCCChh-HhhccCCCeEEEeCCCCCCcCCCCCCcc-cceeecccc
Q 038430 559 KLWILFNGGNILPKW-LTSLTNLSDLKLVFCENCEQLPPLGKLP-LEKLELCHL 610 (677)
Q Consensus 559 ~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~c~~~~~l~~l~~l~-L~~L~l~~~ 610 (677)
.|++++|.+..+|.. +..+++|++|++++|+.. +.+| |+.|++..+
T Consensus 185 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~l~~~~n 232 (272)
T 3rfs_A 185 DLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWIN 232 (272)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC------CCTTTTHHHHHHHH
T ss_pred EEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc------ccCcHHHHHHHHHH
Confidence 999999888877654 578899999999988432 3456 777777653
No 93
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.52 E-value=1.9e-15 Score=169.61 Aligned_cols=180 Identities=15% Similarity=0.051 Sum_probs=123.7
Q ss_pred CceEEEEEEecCC---CcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCcccc-----ccchhhc
Q 038430 303 GKVRHLGLKFKGG---ASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIE-----RLPKTLC 374 (677)
Q Consensus 303 ~~l~~L~l~~~~~---~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~-----~lp~~i~ 374 (677)
.+++.|++.++.. ..++.....+++|++|++++|.+.......++..+..+++|++|++++|.++ .++..+.
T Consensus 138 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~ 217 (592)
T 3ogk_B 138 DDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIAR 217 (592)
T ss_dssp GGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHH
T ss_pred ccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHh
Confidence 4588888887652 1233344578999999999743322222223334467889999999999875 4566677
Q ss_pred cCCCcCEEEecCCCCccccCcccccccccceeecCccCCC---cccCCcCCCCCCCCccCceeeCCCcCCCCcccccccc
Q 038430 375 ELYNLQKLDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSL---KYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLK 451 (677)
Q Consensus 375 ~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~---~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~ 451 (677)
++++|++|++++|. +..+|..+..+++|++|+++.+... ...+..+..+++|+.|++..+.. ......+.
T Consensus 218 ~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~------~~l~~~~~ 290 (592)
T 3ogk_B 218 NCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP------NEMPILFP 290 (592)
T ss_dssp HCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT------TTGGGGGG
T ss_pred hCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch------hHHHHHHh
Confidence 89999999999988 7778888999999999999864332 23345577788888887765432 22445566
Q ss_pred cCCcCCcccccCccCCCChhHHHHhhccCCcccCceEEEee
Q 038430 452 NFQLIRKCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFE 492 (677)
Q Consensus 452 ~l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 492 (677)
.+++|+.|.++++. +.. ......+..+++|+.|+++.+
T Consensus 291 ~~~~L~~L~Ls~~~-l~~--~~~~~~~~~~~~L~~L~L~~~ 328 (592)
T 3ogk_B 291 FAAQIRKLDLLYAL-LET--EDHCTLIQKCPNLEVLETRNV 328 (592)
T ss_dssp GGGGCCEEEETTCC-CCH--HHHHHHHTTCTTCCEEEEEGG
T ss_pred hcCCCcEEecCCCc-CCH--HHHHHHHHhCcCCCEEeccCc
Confidence 78889999988754 221 222233577888888888733
No 94
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.51 E-value=1.9e-14 Score=150.03 Aligned_cols=234 Identities=18% Similarity=0.086 Sum_probs=135.8
Q ss_pred EEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCc-ccCCCCCcCEEEecCcccc-ccch-hhccCCCcCEEE
Q 038430 307 HLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPE-NVGKLMHLKYLNLSELHIE-RLPK-TLCELYNLQKLD 383 (677)
Q Consensus 307 ~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~-~~~~l~~L~~L~Ls~~~i~-~lp~-~i~~l~~L~~L~ 383 (677)
.++.+++++.++|..+ .++++.|++++ +.+..+|. .|.++++|++|+|++|.+. .+|. .|.++++|+.+.
T Consensus 13 ~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~-----N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l 85 (350)
T 4ay9_X 13 VFLCQESKVTEIPSDL--PRNAIELRFVL-----TKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR 85 (350)
T ss_dssp EEEEESTTCCSCCTTC--CTTCSEEEEES-----CCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEE
T ss_pred EEEecCCCCCccCcCc--CCCCCEEEccC-----CcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhh
Confidence 3455566666666544 24677777763 44556664 3567777777777777754 3443 356666666543
Q ss_pred e-cCCCCccccC-cccccccccceeecCccCCCcccCC-cCCCCCCCCccCceeeCCCcCCCCcccccccccCC-cCCcc
Q 038430 384 I-RGCRNLRELP-TGIGKLKNMRSLLNGLTCSLKYMPI-GISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQ-LIRKC 459 (677)
Q Consensus 384 L-~~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~-~L~~L 459 (677)
. .+|. +..+| ..+..+++|++|++++|. +..+|. .+....++..|++..+.... ......+..+. .++.|
T Consensus 86 ~~~~N~-l~~l~~~~f~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~----~l~~~~f~~~~~~l~~L 159 (350)
T 4ay9_X 86 IEKANN-LLYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIH----TIERNSFVGLSFESVIL 159 (350)
T ss_dssp EEEETT-CCEECTTSBCCCTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCC----EECTTSSTTSBSSCEEE
T ss_pred cccCCc-ccccCchhhhhccccccccccccc-cccCCchhhcccchhhhhhhccccccc----cccccchhhcchhhhhh
Confidence 3 3344 55553 446667777777777763 344442 23344444455443322111 11111222222 24445
Q ss_pred cccCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhc
Q 038430 460 GIEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRR 539 (677)
Q Consensus 460 ~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (677)
.+++.. +... ........+|+.|.+..+....
T Consensus 160 ~L~~N~----i~~i-~~~~f~~~~L~~l~l~~~n~l~------------------------------------------- 191 (350)
T 4ay9_X 160 WLNKNG----IQEI-HNSAFNGTQLDELNLSDNNNLE------------------------------------------- 191 (350)
T ss_dssp ECCSSC----CCEE-CTTSSTTEEEEEEECTTCTTCC-------------------------------------------
T ss_pred cccccc----ccCC-ChhhccccchhHHhhccCCccc-------------------------------------------
Confidence 554421 1111 1112233566777665431111
Q ss_pred chhhHHHHh-hhcCCCCCCcEEEEecCCCCCCChhHhhccCCCeEEEeCCCCCCcCCCCCCcc-cceeeccc
Q 038430 540 KNEKDEQLL-EALQPPLNVEKLWILFNGGNILPKWLTSLTNLSDLKLVFCENCEQLPPLGKLP-LEKLELCH 609 (677)
Q Consensus 540 ~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~~~~l~~l~~l~-L~~L~l~~ 609 (677)
.+. ..+..+++|+.|+|++|.+..+|.+ .+.+|+.|.+.+|..++.+|.+..++ |+.+++.+
T Consensus 192 ------~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 192 ------ELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLPTLEKLVALMEASLTY 255 (350)
T ss_dssp ------CCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred ------CCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCCCchhCcChhhCcCCC
Confidence 111 2356678999999999999999964 58899999999998999999999999 99999864
No 95
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.50 E-value=2.9e-14 Score=145.94 Aligned_cols=81 Identities=20% Similarity=0.199 Sum_probs=62.8
Q ss_pred CCCCCCcEEEEecCCCCCC-ChhHhhc---cCCCeEEEeCCCCCCcCCCCCCcc-cceeeccccccceEeCCccccCCCC
Q 038430 552 QPPLNVEKLWILFNGGNIL-PKWLTSL---TNLSDLKLVFCENCEQLPPLGKLP-LEKLELCHLKSVKRVGNEFLEIEES 626 (677)
Q Consensus 552 ~~~~~L~~L~l~~~~~~~l-p~~~~~l---~~L~~L~l~~c~~~~~l~~l~~l~-L~~L~l~~~~~l~~i~~~~~~~~~~ 626 (677)
..+++|++|+|++|.+... |..+..+ ++|++|++++| .++.+|.-- .+ |+.|++++ +.++.++.
T Consensus 221 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~-~~~L~~L~Ls~-N~l~~~~~-------- 289 (310)
T 4glp_A 221 AAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFA-GLEQVPKGL-PAKLRVLDLSS-NRLNRAPQ-------- 289 (310)
T ss_dssp HHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSS-CCCSCCSCC-CSCCSCEECCS-CCCCSCCC--------
T ss_pred hcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCC-CCCchhhhh-cCCCCEEECCC-CcCCCCch--------
Confidence 4568999999999999876 7777755 79999999999 666777521 27 99999997 45655422
Q ss_pred CCCCCCCCCCCcccCCCccceeeeccccc
Q 038430 627 EDDPSSSSSSSSVTAFPKVKSLEIKELEE 655 (677)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 655 (677)
...+++|+.|++++++-
T Consensus 290 ------------~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 290 ------------PDELPEVDNLTLDGNPF 306 (310)
T ss_dssp ------------TTSCCCCSCEECSSTTT
T ss_pred ------------hhhCCCccEEECcCCCC
Confidence 25789999999998763
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.49 E-value=5.4e-14 Score=142.38 Aligned_cols=169 Identities=20% Similarity=0.220 Sum_probs=106.9
Q ss_pred ccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcCEEEecCCCCccccCccccccc
Q 038430 322 IHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKLDIRGCRNLRELPTGIGKLK 401 (677)
Q Consensus 322 ~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~ 401 (677)
+..+++|+.|++++ +.+..++ .+..+++|++|++++|.++.+++ +.++++|++|++++|. +..+|. ++.++
T Consensus 42 ~~~l~~L~~L~l~~-----~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~ 112 (291)
T 1h6t_A 42 QNELNSIDQIIANN-----SDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK-VKDLSS-LKDLK 112 (291)
T ss_dssp HHHHHTCCEEECTT-----SCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCGGG-GTTCT
T ss_pred hhhcCcccEEEccC-----CCcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc-CCCChh-hccCC
Confidence 34466677777764 3344443 36667777777777777776665 7777777777777776 666554 77777
Q ss_pred ccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccccCccCCCChhHHHHhhccCC
Q 038430 402 NMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIEGLSNVSHLDEAERLELKNM 481 (677)
Q Consensus 402 ~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~l~~~ 481 (677)
+|++|++++|. +..+ ..++.+++|+.|++.++.... +. .+..+
T Consensus 113 ~L~~L~L~~n~-i~~~-~~l~~l~~L~~L~l~~n~l~~-------~~----------------------------~l~~l 155 (291)
T 1h6t_A 113 KLKSLSLEHNG-ISDI-NGLVHLPQLESLYLGNNKITD-------IT----------------------------VLSRL 155 (291)
T ss_dssp TCCEEECTTSC-CCCC-GGGGGCTTCCEEECCSSCCCC-------CG----------------------------GGGGC
T ss_pred CCCEEECCCCc-CCCC-hhhcCCCCCCEEEccCCcCCc-------ch----------------------------hhccC
Confidence 77777777773 4333 245556666666555443321 01 13345
Q ss_pred cccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcchhhHHHHhhhcCCCCCCcEEE
Q 038430 482 ENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKNEKDEQLLEALQPPLNVEKLW 561 (677)
Q Consensus 482 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 561 (677)
++|+.|++++|.... + ..+..+++|+.|+
T Consensus 156 ~~L~~L~L~~N~l~~--------------------------------------------------~-~~l~~l~~L~~L~ 184 (291)
T 1h6t_A 156 TKLDTLSLEDNQISD--------------------------------------------------I-VPLAGLTKLQNLY 184 (291)
T ss_dssp TTCSEEECCSSCCCC--------------------------------------------------C-GGGTTCTTCCEEE
T ss_pred CCCCEEEccCCcccc--------------------------------------------------c-hhhcCCCccCEEE
Confidence 556666666551111 0 0145567888888
Q ss_pred EecCCCCCCChhHhhccCCCeEEEeCC
Q 038430 562 ILFNGGNILPKWLTSLTNLSDLKLVFC 588 (677)
Q Consensus 562 l~~~~~~~lp~~~~~l~~L~~L~l~~c 588 (677)
+++|.+..+|. +..+++|+.|++++|
T Consensus 185 L~~N~i~~l~~-l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 185 LSKNHISDLRA-LAGLKNLDVLELFSQ 210 (291)
T ss_dssp CCSSCCCBCGG-GTTCTTCSEEEEEEE
T ss_pred CCCCcCCCChh-hccCCCCCEEECcCC
Confidence 88888877764 778888888888887
No 97
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.49 E-value=4.3e-15 Score=155.73 Aligned_cols=249 Identities=15% Similarity=0.107 Sum_probs=146.9
Q ss_pred EEEEecCCCc-ccccccCCCcccEEEeCCCCCCCCCCccCC-----cccCCCC-CcCEEEecCcccccc-chhhccC---
Q 038430 308 LGLKFKGGAS-FPMSIHGLNRLRTLLIDDESPPNSSLDKIP-----ENVGKLM-HLKYLNLSELHIERL-PKTLCEL--- 376 (677)
Q Consensus 308 L~l~~~~~~~-~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp-----~~~~~l~-~L~~L~Ls~~~i~~l-p~~i~~l--- 376 (677)
..++.+.+.. +|..+...++|++|++++| .+...+ ..+..++ +|++|+|++|.++.. +..+..+
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n-----~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~ 77 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLN-----NLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTS-----CGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHT
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCC-----CCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhc
Confidence 3455666654 3444444556999999863 344443 5567777 899999999998854 5556654
Q ss_pred --CCcCEEEecCCCCccccC-cc----cccc-cccceeecCccCCCcccCC-c----CCC-CCCCCccCceeeCCCcCCC
Q 038430 377 --YNLQKLDIRGCRNLRELP-TG----IGKL-KNMRSLLNGLTCSLKYMPI-G----ISK-LTSLRTLDKFAVGGGVDGG 442 (677)
Q Consensus 377 --~~L~~L~L~~~~~l~~lp-~~----i~~l-~~L~~L~l~~~~~~~~~p~-~----i~~-l~~L~~L~l~~~~~~~~~~ 442 (677)
++|++|++++|. +...+ .. +..+ ++|++|++++|. +...+. . +.. .++|++|++.++......
T Consensus 78 ~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~- 154 (362)
T 3goz_A 78 IPANVTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKS- 154 (362)
T ss_dssp SCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSC-
T ss_pred cCCCccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHH-
Confidence 899999999998 55443 33 3444 789999999985 444332 2 333 358888888776654210
Q ss_pred CcccccccccCC-cCCcccccCccCCCChhHHHHhhccCC-cccCceEEEeecCCCCCcccccccccccCCCCCCCCCCC
Q 038430 443 STCRLECLKNFQ-LIRKCGIEGLSNVSHLDEAERLELKNM-ENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGG 520 (677)
Q Consensus 443 ~~~~~~~L~~l~-~L~~L~i~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (677)
.......+..+. +|+.|+++++.-...........+..+ ++|+.|++++|....
T Consensus 155 ~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~------------------------ 210 (362)
T 3goz_A 155 SDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGL------------------------ 210 (362)
T ss_dssp HHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG------------------------
T ss_pred HHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCCh------------------------
Confidence 011123334444 777777777532222223333345555 478888887761110
Q ss_pred cccccCCccccchhhhhhcchhhHHHHhhhcCC-CCCCcEEEEecCCCCCCCh-----hHhhccCCCeEEEeCCC--CC-
Q 038430 521 YKEEKGGKVVDGEYEERRRKNEKDEQLLEALQP-PLNVEKLWILFNGGNILPK-----WLTSLTNLSDLKLVFCE--NC- 591 (677)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~lp~-----~~~~l~~L~~L~l~~c~--~~- 591 (677)
.....+...+.. +++|+.|+|++|.+...+. .+..+++|++|++++|. .+
T Consensus 211 ---------------------~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~ 269 (362)
T 3goz_A 211 ---------------------KSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMS 269 (362)
T ss_dssp ---------------------SCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCC
T ss_pred ---------------------hHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccC
Confidence 112223333333 3578888888887765543 22366778888888773 11
Q ss_pred ----CcCC-CCCCcc-cceeeccc
Q 038430 592 ----EQLP-PLGKLP-LEKLELCH 609 (677)
Q Consensus 592 ----~~l~-~l~~l~-L~~L~l~~ 609 (677)
..++ .+..++ |+.|++++
T Consensus 270 ~~~~~~l~~~~~~l~~L~~LdL~~ 293 (362)
T 3goz_A 270 KEQCKALGAAFPNIQKIILVDKNG 293 (362)
T ss_dssp HHHHHHHHTTSTTCCEEEEECTTS
T ss_pred HHHHHHHHHHhccCCceEEEecCC
Confidence 1111 245667 77777776
No 98
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.44 E-value=2.7e-13 Score=150.71 Aligned_cols=170 Identities=21% Similarity=0.225 Sum_probs=106.4
Q ss_pred ccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcCEEEecCCCCccccCccccccc
Q 038430 322 IHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKLDIRGCRNLRELPTGIGKLK 401 (677)
Q Consensus 322 ~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~ 401 (677)
+..+++|+.|++++ +.+..+| .+..+++|+.|+|++|.+..+|+ +..+++|+.|+|++|. +..+| .+..++
T Consensus 39 ~~~L~~L~~L~l~~-----n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~ 109 (605)
T 1m9s_A 39 QNELNSIDQIIANN-----SDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENK-IKDLS-SLKDLK 109 (605)
T ss_dssp HHHHTTCCCCBCTT-----CCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSC-CCCCT-TSTTCT
T ss_pred hhcCCCCCEEECcC-----CCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCC-CCCCh-hhccCC
Confidence 34456666666663 3344444 36667777777777777766655 6677777777777766 55555 366677
Q ss_pred ccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccccCccCCCChhHHHHhhccCC
Q 038430 402 NMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIEGLSNVSHLDEAERLELKNM 481 (677)
Q Consensus 402 ~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~l~~~ 481 (677)
+|++|++++|. +..+| .+..+++|+.|++.++.... + ..+..+
T Consensus 110 ~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~Ls~N~l~~------------------------------l-----~~l~~l 152 (605)
T 1m9s_A 110 KLKSLSLEHNG-ISDIN-GLVHLPQLESLYLGNNKITD------------------------------I-----TVLSRL 152 (605)
T ss_dssp TCCEEECTTSC-CCCCG-GGGGCTTCSEEECCSSCCCC------------------------------C-----GGGGSC
T ss_pred CCCEEEecCCC-CCCCc-cccCCCccCEEECCCCccCC------------------------------c-----hhhccc
Confidence 77777777663 33332 35555555555554433221 1 224556
Q ss_pred cccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcchhhHHHHhhhcCCCCCCcEEE
Q 038430 482 ENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKNEKDEQLLEALQPPLNVEKLW 561 (677)
Q Consensus 482 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 561 (677)
++|+.|+|+.|.... +.. +..+++|+.|+
T Consensus 153 ~~L~~L~Ls~N~l~~--------------------------------------------------~~~-l~~l~~L~~L~ 181 (605)
T 1m9s_A 153 TKLDTLSLEDNQISD--------------------------------------------------IVP-LAGLTKLQNLY 181 (605)
T ss_dssp TTCSEEECCSSCCCC--------------------------------------------------CGG-GTTCTTCCEEE
T ss_pred CCCCEEECcCCcCCC--------------------------------------------------chh-hccCCCCCEEE
Confidence 777777777661111 011 55678899999
Q ss_pred EecCCCCCCChhHhhccCCCeEEEeCCC
Q 038430 562 ILFNGGNILPKWLTSLTNLSDLKLVFCE 589 (677)
Q Consensus 562 l~~~~~~~lp~~~~~l~~L~~L~l~~c~ 589 (677)
|++|.+..+| .+..+++|+.|+|++|.
T Consensus 182 Ls~N~i~~l~-~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 182 LSKNHISDLR-ALAGLKNLDVLELFSQE 208 (605)
T ss_dssp CCSSCCCBCG-GGTTCTTCSEEECCSEE
T ss_pred CcCCCCCCCh-HHccCCCCCEEEccCCc
Confidence 9998888775 57888999999998883
No 99
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.44 E-value=2.6e-13 Score=134.28 Aligned_cols=169 Identities=19% Similarity=0.252 Sum_probs=92.8
Q ss_pred EEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccC-CcccCCCCCcCEEEecCccccccch-hhccCCCcCEEE
Q 038430 306 RHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKI-PENVGKLMHLKYLNLSELHIERLPK-TLCELYNLQKLD 383 (677)
Q Consensus 306 ~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~l-p~~~~~l~~L~~L~Ls~~~i~~lp~-~i~~l~~L~~L~ 383 (677)
+.+++.++.+..+|..+. ++++.|++++ +.+..+ +..++.+++|++|++++|.++.+++ .+.++++|++|+
T Consensus 17 ~~l~~~~~~l~~~p~~~~--~~l~~L~L~~-----n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 89 (251)
T 3m19_A 17 KEVDCQGKSLDSVPSGIP--ADTEKLDLQS-----TGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLG 89 (251)
T ss_dssp TEEECTTCCCSSCCSCCC--TTCCEEECTT-----SCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred eEEecCCCCccccCCCCC--CCCCEEEccC-----CCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEE
Confidence 345555556666664443 4566666664 222222 2345666666666666666665443 356666666666
Q ss_pred ecCCCCccccCc-ccccccccceeecCccCCCcccCCc-CCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccc
Q 038430 384 IRGCRNLRELPT-GIGKLKNMRSLLNGLTCSLKYMPIG-ISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGI 461 (677)
Q Consensus 384 L~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i 461 (677)
+++|. +..+|. .+..+++|++|++++| .+..+|.. ++.+++|++|++.++.... .....+..+++|+.|++
T Consensus 90 L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-----~~~~~~~~l~~L~~L~L 162 (251)
T 3m19_A 90 LANNQ-LASLPLGVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTNQLQS-----IPAGAFDKLTNLQTLSL 162 (251)
T ss_dssp CTTSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCC-----CCTTTTTTCTTCCEEEC
T ss_pred CCCCc-ccccChhHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCCcCCc-----cCHHHcCcCcCCCEEEC
Confidence 66666 444443 3556666666666666 34444433 4566666666666655442 12234555666666666
Q ss_pred cCccCCCChhHHHHhhccCCcccCceEEEee
Q 038430 462 EGLSNVSHLDEAERLELKNMENLLHLYLWFE 492 (677)
Q Consensus 462 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 492 (677)
++.. +.......+..+++|+.|++++|
T Consensus 163 ~~N~----l~~~~~~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 163 STNQ----LQSVPHGAFDRLGKLQTITLFGN 189 (251)
T ss_dssp CSSC----CSCCCTTTTTTCTTCCEEECCSC
T ss_pred CCCc----CCccCHHHHhCCCCCCEEEeeCC
Confidence 5532 11222234556677777777766
No 100
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.43 E-value=3.3e-13 Score=128.15 Aligned_cols=81 Identities=22% Similarity=0.207 Sum_probs=47.7
Q ss_pred CCCCCcCEEEecCccccccchhhccCCCcCEEEecCCCCccccCcccccccccceeecCccCCCcccCCcCCCCCCCCcc
Q 038430 351 GKLMHLKYLNLSELHIERLPKTLCELYNLQKLDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTL 430 (677)
Q Consensus 351 ~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L 430 (677)
+.+++|++|++++|.++.+| .+..+++|++|++++|. +..++ .+..+++|++|++++|......|..++.+++|++|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~-~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIH-ATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCC-CSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCC-CCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 44566666666666666665 56666666666666664 44444 36666666666666664333345555555555555
Q ss_pred Ccee
Q 038430 431 DKFA 434 (677)
Q Consensus 431 ~l~~ 434 (677)
++.+
T Consensus 118 ~Ls~ 121 (197)
T 4ezg_A 118 DISH 121 (197)
T ss_dssp ECCS
T ss_pred EecC
Confidence 5443
No 101
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.43 E-value=4.7e-13 Score=132.41 Aligned_cols=104 Identities=20% Similarity=0.177 Sum_probs=80.3
Q ss_pred CcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccch-hhccCCCcCEEEecCCCCccccC-ccccccccc
Q 038430 326 NRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPK-TLCELYNLQKLDIRGCRNLRELP-TGIGKLKNM 403 (677)
Q Consensus 326 ~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp-~~i~~l~~L 403 (677)
...++++++ +..+..+|..+. .+|+.|++++|.+..+++ .+.++++|++|++++|. +..++ ..+..+++|
T Consensus 14 ~~~~~l~~~-----~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L 85 (251)
T 3m19_A 14 EGKKEVDCQ-----GKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLTEL 85 (251)
T ss_dssp GGGTEEECT-----TCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTC
T ss_pred CCCeEEecC-----CCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc-CCccCHhHhccCCcC
Confidence 457788887 456777887665 689999999999987655 58999999999999998 55554 457899999
Q ss_pred ceeecCccCCCcccC-CcCCCCCCCCccCceeeCCC
Q 038430 404 RSLLNGLTCSLKYMP-IGISKLTSLRTLDKFAVGGG 438 (677)
Q Consensus 404 ~~L~l~~~~~~~~~p-~~i~~l~~L~~L~l~~~~~~ 438 (677)
++|++++|. +..+| ..++.+++|++|++.++...
T Consensus 86 ~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 120 (251)
T 3m19_A 86 GTLGLANNQ-LASLPLGVFDHLTQLDKLYLGGNQLK 120 (251)
T ss_dssp CEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CEEECCCCc-ccccChhHhcccCCCCEEEcCCCcCC
Confidence 999999995 44554 45678888888887766543
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.42 E-value=5.8e-13 Score=134.76 Aligned_cols=166 Identities=21% Similarity=0.245 Sum_probs=135.1
Q ss_pred CCceEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcCE
Q 038430 302 GGKVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQK 381 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~ 381 (677)
..+++.|++.++.+..++ .+..+++|++|++++ +.+..++. +..+++|++|++++|.++.+|. +..+++|++
T Consensus 45 l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~-----n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~ 116 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNG-----NKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKS 116 (291)
T ss_dssp HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCS-----SCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCE
T ss_pred cCcccEEEccCCCcccCh-hHhcCCCCCEEEccC-----CccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCE
Confidence 457889999999998886 588899999999995 44555655 8899999999999999988764 899999999
Q ss_pred EEecCCCCccccCcccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccc
Q 038430 382 LDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGI 461 (677)
Q Consensus 382 L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i 461 (677)
|++++|. +..++ .+..+++|++|++++|. +..+ ..++.+++|+.|++.++.... +..+..+++|+.|++
T Consensus 117 L~L~~n~-i~~~~-~l~~l~~L~~L~l~~n~-l~~~-~~l~~l~~L~~L~L~~N~l~~-------~~~l~~l~~L~~L~L 185 (291)
T 1h6t_A 117 LSLEHNG-ISDIN-GLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDNQISD-------IVPLAGLTKLQNLYL 185 (291)
T ss_dssp EECTTSC-CCCCG-GGGGCTTCCEEECCSSC-CCCC-GGGGGCTTCSEEECCSSCCCC-------CGGGTTCTTCCEEEC
T ss_pred EECCCCc-CCCCh-hhcCCCCCCEEEccCCc-CCcc-hhhccCCCCCEEEccCCcccc-------chhhcCCCccCEEEC
Confidence 9999998 77775 48899999999999994 5555 568899999999999887653 223888899999999
Q ss_pred cCccCCCChhHHHHhhccCCcccCceEEEee
Q 038430 462 EGLSNVSHLDEAERLELKNMENLLHLYLWFE 492 (677)
Q Consensus 462 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 492 (677)
++.. +..+ ..+..+++|+.|++++|
T Consensus 186 ~~N~-i~~l-----~~l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 186 SKNH-ISDL-----RALAGLKNLDVLELFSQ 210 (291)
T ss_dssp CSSC-CCBC-----GGGTTCTTCSEEEEEEE
T ss_pred CCCc-CCCC-----hhhccCCCCCEEECcCC
Confidence 8753 2222 23788999999999988
No 103
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.42 E-value=1.8e-13 Score=150.38 Aligned_cols=187 Identities=19% Similarity=0.136 Sum_probs=126.9
Q ss_pred ceEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcCEEE
Q 038430 304 KVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKLD 383 (677)
Q Consensus 304 ~l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~ 383 (677)
+++.|++.++.+..+|..+ +++|++|++++ +.+..+| ..+++|++|++++|.++.+|. +.+ +|++|+
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~-----N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~ 126 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQ-----NALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLD 126 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC--CTTCSEEECCS-----SCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEE
T ss_pred CccEEEeCCCCCCccCHhH--cCCCCEEECcC-----CCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEE
Confidence 6778888888888788655 37888888885 3445676 457888888888888888877 655 888888
Q ss_pred ecCCCCccccCcccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccccC
Q 038430 384 IRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIEG 463 (677)
Q Consensus 384 L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~ 463 (677)
+++|. +..+|. .+++|++|++++|. +..+|. .+++|++|++.+|.....+ .+.
T Consensus 127 Ls~N~-l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N~L~~lp-------~l~------------ 179 (571)
T 3cvr_A 127 VDNNQ-LTMLPE---LPALLEYINADNNQ-LTMLPE---LPTSLEVLSVRNNQLTFLP-------ELP------------ 179 (571)
T ss_dssp CCSSC-CSCCCC---CCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSCCSCCC-------CCC------------
T ss_pred CCCCc-CCCCCC---cCccccEEeCCCCc-cCcCCC---cCCCcCEEECCCCCCCCcc-------hhh------------
Confidence 88887 667877 67888888888884 555775 4667777777666543210 011
Q ss_pred ccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcchhh
Q 038430 464 LSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKNEK 543 (677)
Q Consensus 464 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (677)
++|+.|++++|.... .| .
T Consensus 180 ------------------~~L~~L~Ls~N~L~~-lp-----------------------~-------------------- 197 (571)
T 3cvr_A 180 ------------------ESLEALDVSTNLLES-LP-----------------------A-------------------- 197 (571)
T ss_dssp ------------------TTCCEEECCSSCCSS-CC-----------------------C--------------------
T ss_pred ------------------CCCCEEECcCCCCCc-hh-----------------------h--------------------
Confidence 345555555551110 00 0
Q ss_pred HHHHhhh-cCCCCCCcEEEEecCCCCCCChhHhhccCCCeEEEeCCCCCCcCC
Q 038430 544 DEQLLEA-LQPPLNVEKLWILFNGGNILPKWLTSLTNLSDLKLVFCENCEQLP 595 (677)
Q Consensus 544 ~~~~~~~-l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~~~~l~ 595 (677)
+... ...++.|+.|+|++|.+..+|.++..+++|+.|+|++|.....+|
T Consensus 198 ---~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 198 ---VPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp ---CC--------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred ---HHHhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence 0000 122345699999999999999999999999999999995444433
No 104
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.41 E-value=2e-14 Score=150.65 Aligned_cols=238 Identities=10% Similarity=0.047 Sum_probs=159.2
Q ss_pred cCCCceEEEEEEecCCCccc-----ccccCCC-cccEEEeCCCCCCCCCCccC-CcccCCC-----CCcCEEEecCcccc
Q 038430 300 AFGGKVRHLGLKFKGGASFP-----MSIHGLN-RLRTLLIDDESPPNSSLDKI-PENVGKL-----MHLKYLNLSELHIE 367 (677)
Q Consensus 300 ~~~~~l~~L~l~~~~~~~~p-----~~~~~l~-~L~~L~l~~~~l~~~~~~~l-p~~~~~l-----~~L~~L~Ls~~~i~ 367 (677)
..+..++.|++++|.+...+ ..+..++ +|++|++++|. +... +..+..+ ++|++|++++|.++
T Consensus 19 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-----l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 93 (362)
T 3goz_A 19 SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNS-----LGFKNSDELVQILAAIPANVTSLNLSGNFLS 93 (362)
T ss_dssp TSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSC-----GGGSCHHHHHHHHHTSCTTCCEEECCSSCGG
T ss_pred hCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCC-----CCHHHHHHHHHHHhccCCCccEEECcCCcCC
Confidence 34567999999999987765 5677888 89999999733 3322 3334443 89999999999988
Q ss_pred ccch-h----hccC-CCcCEEEecCCCCccccCc-c----ccc-ccccceeecCccCCCc----ccCCcCCCCC-CCCcc
Q 038430 368 RLPK-T----LCEL-YNLQKLDIRGCRNLRELPT-G----IGK-LKNMRSLLNGLTCSLK----YMPIGISKLT-SLRTL 430 (677)
Q Consensus 368 ~lp~-~----i~~l-~~L~~L~L~~~~~l~~lp~-~----i~~-l~~L~~L~l~~~~~~~----~~p~~i~~l~-~L~~L 430 (677)
..+. . +..+ ++|++|++++|. +...+. . +.. .++|++|++++|.... .++..+..+. +|++|
T Consensus 94 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L 172 (362)
T 3goz_A 94 YKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSL 172 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEE
T ss_pred hHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEe
Confidence 5433 2 4455 899999999998 665543 2 333 3699999999995332 3344445554 89999
Q ss_pred CceeeCCCcCCCCcccccccccC-CcCCcccccCccCCCChhHHHHhhccC-CcccCceEEEeecCCCCCcccccccccc
Q 038430 431 DKFAVGGGVDGGSTCRLECLKNF-QLIRKCGIEGLSNVSHLDEAERLELKN-MENLLHLYLWFEVVDREDEDWEDEEENE 508 (677)
Q Consensus 431 ~l~~~~~~~~~~~~~~~~~L~~l-~~L~~L~i~~~~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 508 (677)
++.++...... .......+..+ ++|+.|+++++.-...........+.. .++|+.|++++|....
T Consensus 173 ~Ls~n~l~~~~-~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~------------ 239 (362)
T 3goz_A 173 NLRGNNLASKN-CAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG------------ 239 (362)
T ss_dssp ECTTSCGGGSC-HHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC------------
T ss_pred eecCCCCchhh-HHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCc------------
Confidence 99888765310 01112234455 589999998853222222233444544 4699999999882221
Q ss_pred cCCCCCCCCCCCcccccCCccccchhhhhhcchhhHHHHhhhcCCCCCCcEEEEecCCCCCCCh--------hHhhccCC
Q 038430 509 DEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKNEKDEQLLEALQPPLNVEKLWILFNGGNILPK--------WLTSLTNL 580 (677)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~--------~~~~l~~L 580 (677)
.....+...+..+++|+.|++++|.+..++. .+..+++|
T Consensus 240 ---------------------------------~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L 286 (362)
T 3goz_A 240 ---------------------------------PSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKI 286 (362)
T ss_dssp ---------------------------------CCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEE
T ss_pred ---------------------------------HHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCce
Confidence 1223444566778899999999998554432 33467889
Q ss_pred CeEEEeCCC
Q 038430 581 SDLKLVFCE 589 (677)
Q Consensus 581 ~~L~l~~c~ 589 (677)
+.|++++|.
T Consensus 287 ~~LdL~~N~ 295 (362)
T 3goz_A 287 ILVDKNGKE 295 (362)
T ss_dssp EEECTTSCB
T ss_pred EEEecCCCc
Confidence 999999984
No 105
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.40 E-value=6.5e-13 Score=126.11 Aligned_cols=129 Identities=16% Similarity=0.157 Sum_probs=98.0
Q ss_pred CCceEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccc-cchhhccCCCcC
Q 038430 302 GGKVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIER-LPKTLCELYNLQ 380 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~-lp~~i~~l~~L~ 380 (677)
..+++.|+++++.+..+| .+..+++|++|++++| .+..+ ..+..+++|++|++++|.++. .|..++++++|+
T Consensus 43 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n-----~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLT-GIEYAHNIKDLTINNI-----HATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESC-----CCSCC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred cCCccEEeccCCCccChH-HHhcCCCCCEEEccCC-----CCCcc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 446788888888888877 6888888888888862 33333 367888888888888888874 677788888888
Q ss_pred EEEecCCCCccccCcccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCC
Q 038430 381 KLDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGG 438 (677)
Q Consensus 381 ~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~ 438 (677)
+|++++|......|..++.+++|++|++++|..+..+| .+..+++|+.|++.++...
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~ 172 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVH 172 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCC
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCc
Confidence 88888888444567778888888888888885466666 5777777777777665543
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.38 E-value=1.5e-13 Score=152.72 Aligned_cols=166 Identities=21% Similarity=0.219 Sum_probs=126.9
Q ss_pred CCceEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcCE
Q 038430 302 GGKVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQK 381 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~ 381 (677)
...++.|++.++.+..++ .+..+++|+.|++++ +.+..+|. +..+++|++|+|++|.+..+| .+..+++|++
T Consensus 42 L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~-----N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~ 113 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNG-----NKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKS 113 (605)
T ss_dssp HTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTT-----SCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCE
T ss_pred CCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeC-----CCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCE
Confidence 567889999999998887 688999999999996 34555655 889999999999999999876 6899999999
Q ss_pred EEecCCCCccccCcccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccc
Q 038430 382 LDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGI 461 (677)
Q Consensus 382 L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i 461 (677)
|+|++|. +..+|. +..|++|+.|++++|. +..+ ..++.+++|+.|++.++.... +..+..+++|+.|++
T Consensus 114 L~Ls~N~-l~~l~~-l~~l~~L~~L~Ls~N~-l~~l-~~l~~l~~L~~L~Ls~N~l~~-------~~~l~~l~~L~~L~L 182 (605)
T 1m9s_A 114 LSLEHNG-ISDING-LVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDNQISD-------IVPLAGLTKLQNLYL 182 (605)
T ss_dssp EECTTSC-CCCCGG-GGGCTTCSEEECCSSC-CCCC-GGGGSCTTCSEEECCSSCCCC-------CGGGTTCTTCCEEEC
T ss_pred EEecCCC-CCCCcc-ccCCCccCEEECCCCc-cCCc-hhhcccCCCCEEECcCCcCCC-------chhhccCCCCCEEEC
Confidence 9999998 777764 9999999999999994 5555 568889999999988776543 112666666666666
Q ss_pred cCccCCCChhHHHHhhccCCcccCceEEEee
Q 038430 462 EGLSNVSHLDEAERLELKNMENLLHLYLWFE 492 (677)
Q Consensus 462 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 492 (677)
+++.- ..+ ..+..+++|+.|+|++|
T Consensus 183 s~N~i-~~l-----~~l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 183 SKNHI-SDL-----RALAGLKNLDVLELFSQ 207 (605)
T ss_dssp CSSCC-CBC-----GGGTTCTTCSEEECCSE
T ss_pred cCCCC-CCC-----hHHccCCCCCEEEccCC
Confidence 65321 111 12455555666665555
No 107
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.38 E-value=2.9e-12 Score=140.81 Aligned_cols=174 Identities=19% Similarity=0.142 Sum_probs=129.3
Q ss_pred CcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcCEEEecCCCCccccCcccccccccce
Q 038430 326 NRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKLDIRGCRNLRELPTGIGKLKNMRS 405 (677)
Q Consensus 326 ~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~ 405 (677)
.+|+.|++++ +.+..+|..+. ++|++|++++|.++.+| ..+++|++|++++|. +..+|. +.. +|++
T Consensus 59 ~~L~~L~Ls~-----n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~-l~~ip~-l~~--~L~~ 124 (571)
T 3cvr_A 59 NQFSELQLNR-----LNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNR-LSTLPE-LPA--SLKH 124 (571)
T ss_dssp TTCSEEECCS-----SCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSC-CSCCCC-CCT--TCCE
T ss_pred CCccEEEeCC-----CCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCC-CCCcch-hhc--CCCE
Confidence 3899999986 34556787663 78999999999999998 568999999999998 777888 665 9999
Q ss_pred eecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccccCccCCCChhHHHHhhccCCcccC
Q 038430 406 LLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIEGLSNVSHLDEAERLELKNMENLL 485 (677)
Q Consensus 406 L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~ 485 (677)
|++++|. +..+|. .+++|+.|++.++.... +.. .+++|+
T Consensus 125 L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N~l~~-------lp~------------------------------~l~~L~ 163 (571)
T 3cvr_A 125 LDVDNNQ-LTMLPE---LPALLEYINADNNQLTM-------LPE------------------------------LPTSLE 163 (571)
T ss_dssp EECCSSC-CSCCCC---CCTTCCEEECCSSCCSC-------CCC------------------------------CCTTCC
T ss_pred EECCCCc-CCCCCC---cCccccEEeCCCCccCc-------CCC------------------------------cCCCcC
Confidence 9999994 555776 57788888776654331 000 235677
Q ss_pred ceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcchhhHHHHhhhcCCCCCCcEEEEecC
Q 038430 486 HLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKNEKDEQLLEALQPPLNVEKLWILFN 565 (677)
Q Consensus 486 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 565 (677)
.|++++|.... ++. +. ++|+.|+|++|
T Consensus 164 ~L~Ls~N~L~~--------------------------------------------------lp~-l~--~~L~~L~Ls~N 190 (571)
T 3cvr_A 164 VLSVRNNQLTF--------------------------------------------------LPE-LP--ESLEALDVSTN 190 (571)
T ss_dssp EEECCSSCCSC--------------------------------------------------CCC-CC--TTCCEEECCSS
T ss_pred EEECCCCCCCC--------------------------------------------------cch-hh--CCCCEEECcCC
Confidence 77777661111 111 22 78999999999
Q ss_pred CCCCCChhHhhccCC-------CeEEEeCCCCCCcCCC-CCCcc-cceeeccccc
Q 038430 566 GGNILPKWLTSLTNL-------SDLKLVFCENCEQLPP-LGKLP-LEKLELCHLK 611 (677)
Q Consensus 566 ~~~~lp~~~~~l~~L-------~~L~l~~c~~~~~l~~-l~~l~-L~~L~l~~~~ 611 (677)
.+..+|. +.. +| +.|+|++| .+..+|. +..++ |+.|+|++++
T Consensus 191 ~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 191 LLESLPA-VPV--RNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp CCSSCCC-CC----------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSSS
T ss_pred CCCchhh-HHH--hhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEeeCCc
Confidence 9999987 543 66 99999998 7778886 77799 9999999854
No 108
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.36 E-value=2e-12 Score=119.27 Aligned_cols=130 Identities=25% Similarity=0.200 Sum_probs=111.0
Q ss_pred CCceEEEEEEecCCC--cccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccc-cchhhccCCC
Q 038430 302 GGKVRHLGLKFKGGA--SFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIER-LPKTLCELYN 378 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~--~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~-lp~~i~~l~~ 378 (677)
+.+++.|++.+|.+. .+|..+..+++|++|++++|. +..+ ..++.+++|++|++++|.++. +|..+.++++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-----l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 96 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-----LISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPN 96 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-----CCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTT
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-----CCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCC
Confidence 678999999999987 888888999999999999643 4444 668899999999999999986 7777888999
Q ss_pred cCEEEecCCCCccccC--cccccccccceeecCccCCCcccCC----cCCCCCCCCccCceeeCCCc
Q 038430 379 LQKLDIRGCRNLRELP--TGIGKLKNMRSLLNGLTCSLKYMPI----GISKLTSLRTLDKFAVGGGV 439 (677)
Q Consensus 379 L~~L~L~~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~~p~----~i~~l~~L~~L~l~~~~~~~ 439 (677)
|++|++++|. +..+| ..+..+++|++|++++| .+..+|. .+..+++|++|++..+....
T Consensus 97 L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 97 LTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp CCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred CCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 9999999998 77776 67899999999999999 4566666 68899999999998877653
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.35 E-value=2e-12 Score=128.62 Aligned_cols=59 Identities=17% Similarity=0.247 Sum_probs=36.5
Q ss_pred cCCCCCcCEEEecCccccccchhhccCCCcCEEEecCCCCccccCcccccccccceeecCcc
Q 038430 350 VGKLMHLKYLNLSELHIERLPKTLCELYNLQKLDIRGCRNLRELPTGIGKLKNMRSLLNGLT 411 (677)
Q Consensus 350 ~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~ 411 (677)
+..+++|++|++++|.++.+| .+..+++|++|++++|. +..+|. +..+++|++|++++|
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~L~~L~L~~N 95 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDLTKLEELSVNRN 95 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCCEEECCSS
T ss_pred hhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCc-cCCChh-hccCCCCCEEECCCC
Confidence 455666666666666666555 45666666666666665 555555 666666666666666
No 110
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.35 E-value=9.5e-13 Score=131.05 Aligned_cols=161 Identities=17% Similarity=0.154 Sum_probs=115.2
Q ss_pred EEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcCEEEecC
Q 038430 307 HLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKLDIRG 386 (677)
Q Consensus 307 ~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~ 386 (677)
.+.+..+.+..++ .+..+++|++|++++ +.+..+| .++.+++|++|++++|.++.+|+ +.++++|++|++++
T Consensus 23 ~l~l~~~~i~~~~-~~~~l~~L~~L~l~~-----n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 23 KQNLGKQSVTDLV-SQKELSGVQNFNGDN-----SNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHTCSCTTSEE-CHHHHTTCSEEECTT-----SCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCS
T ss_pred HHHhcCCCccccc-chhhcCcCcEEECcC-----CCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCC
Confidence 3344455555555 566778888888875 3455565 57778888888888888887776 88888888888888
Q ss_pred CCCccccCcccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccccCccC
Q 038430 387 CRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIEGLSN 466 (677)
Q Consensus 387 ~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~ 466 (677)
|. +..+|... . ++|++|++++| .+..+| .++.+++|+.|++.++.... +..+..+++|+.|++++..-
T Consensus 95 N~-l~~l~~~~-~-~~L~~L~L~~N-~l~~~~-~l~~l~~L~~L~Ls~N~i~~-------~~~l~~l~~L~~L~L~~N~i 162 (263)
T 1xeu_A 95 NR-LKNLNGIP-S-ACLSRLFLDNN-ELRDTD-SLIHLKNLEILSIRNNKLKS-------IVMLGFLSKLEVLDLHGNEI 162 (263)
T ss_dssp SC-CSCCTTCC-C-SSCCEEECCSS-CCSBSG-GGTTCTTCCEEECTTSCCCB-------CGGGGGCTTCCEEECTTSCC
T ss_pred Cc-cCCcCccc-c-CcccEEEccCC-ccCCCh-hhcCcccccEEECCCCcCCC-------ChHHccCCCCCEEECCCCcC
Confidence 87 77777633 3 78888888888 455554 47788888888887776553 24677788888888877432
Q ss_pred CCChhHHHHhhccCCcccCceEEEeec
Q 038430 467 VSHLDEAERLELKNMENLLHLYLWFEV 493 (677)
Q Consensus 467 ~~~~~~~~~~~l~~~~~L~~L~l~~~~ 493 (677)
... ..+..+++|+.|++++|.
T Consensus 163 ----~~~--~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 163 ----TNT--GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp ----CBC--TTSTTCCCCCEEEEEEEE
T ss_pred ----cch--HHhccCCCCCEEeCCCCc
Confidence 111 457788999999999883
No 111
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.32 E-value=4.7e-13 Score=152.57 Aligned_cols=153 Identities=20% Similarity=0.183 Sum_probs=63.1
Q ss_pred CceEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcCEE
Q 038430 303 GKVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKL 382 (677)
Q Consensus 303 ~~l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L 382 (677)
.+++.|++.++.+...+..+.....|+.+.+....+.++.+...|..+..+..|+.|+|++|.+..+|..+.++++|++|
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L 252 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRL 252 (727)
T ss_dssp -------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCC
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEE
Confidence 34556666666555544443333344444433322223333334455566666666666666666666666666666666
Q ss_pred EecCCCCccccCcccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCccccc
Q 038430 383 DIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIE 462 (677)
Q Consensus 383 ~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~ 462 (677)
+|++|. +..+|..++.|++|++|++++|. +..+|..++.|++|++|++.++.... ....+..+.+|+.|+++
T Consensus 253 ~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~------lp~~~~~l~~L~~L~L~ 324 (727)
T 4b8c_D 253 YLNGNS-LTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKYFYFFDNMVTT------LPWEFGNLCNLQFLGVE 324 (727)
T ss_dssp BCTTSC-CSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCSEEECCSSCCCC------CCSSTTSCTTCCCEECT
T ss_pred EeeCCc-CcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCCEEECCCCCCCc------cChhhhcCCCccEEeCC
Confidence 666665 55666666666666666666663 44566666666666666666554432 22335555566666665
Q ss_pred C
Q 038430 463 G 463 (677)
Q Consensus 463 ~ 463 (677)
+
T Consensus 325 ~ 325 (727)
T 4b8c_D 325 G 325 (727)
T ss_dssp T
T ss_pred C
Confidence 5
No 112
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.31 E-value=7.9e-12 Score=120.80 Aligned_cols=86 Identities=22% Similarity=0.272 Sum_probs=38.3
Q ss_pred cCCCCCcCEEEecCcccccc-chhhccCCCcCEEEecCCCCccccCcc-cccccccceeecCccCCCcccCCcCCCCCCC
Q 038430 350 VGKLMHLKYLNLSELHIERL-PKTLCELYNLQKLDIRGCRNLRELPTG-IGKLKNMRSLLNGLTCSLKYMPIGISKLTSL 427 (677)
Q Consensus 350 ~~~l~~L~~L~Ls~~~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L 427 (677)
+..+++|++|+|++|.++.+ |..+.++++|++|+|++|. +..+|.. +..+++|++|++++|......|..+..+++|
T Consensus 52 ~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 130 (220)
T 2v9t_B 52 FSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK-ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNL 130 (220)
T ss_dssp STTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred hhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc-CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCC
Confidence 44444455555555444433 3344444555555555444 4444432 3444445555554443222223334444444
Q ss_pred CccCceeeC
Q 038430 428 RTLDKFAVG 436 (677)
Q Consensus 428 ~~L~l~~~~ 436 (677)
+.|++.++.
T Consensus 131 ~~L~L~~N~ 139 (220)
T 2v9t_B 131 NLLSLYDNK 139 (220)
T ss_dssp CEEECCSSC
T ss_pred CEEECCCCc
Confidence 444444443
No 113
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.31 E-value=1.5e-13 Score=153.97 Aligned_cols=134 Identities=15% Similarity=0.105 Sum_probs=72.2
Q ss_pred CCCCcCEEEecCcccc-ccchhhc-cCCCcCEEEecCCCCccc--cCcccccccccceeecCccCCCcc----cCCcCCC
Q 038430 352 KLMHLKYLNLSELHIE-RLPKTLC-ELYNLQKLDIRGCRNLRE--LPTGIGKLKNMRSLLNGLTCSLKY----MPIGISK 423 (677)
Q Consensus 352 ~l~~L~~L~Ls~~~i~-~lp~~i~-~l~~L~~L~L~~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~----~p~~i~~ 423 (677)
.+++|++|++++|.++ ..+..+. .+++|++|++++|..+.. ++..+.++++|++|++++|..... ++.....
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 4567777777777665 2333443 567777777777743443 444445677777777777641111 2222335
Q ss_pred CCCCCccCceeeCCCcCCCCcccccc-cccCCcCCcccccCccCCCChhHHHHhhccCCcccCceEEEee
Q 038430 424 LTSLRTLDKFAVGGGVDGGSTCRLEC-LKNFQLIRKCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFE 492 (677)
Q Consensus 424 l~~L~~L~l~~~~~~~~~~~~~~~~~-L~~l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 492 (677)
+++|++|++..+.... ....+.. ...+++|+.|.+.++.. ... ....+..+++|+.|.+..+
T Consensus 183 ~~~L~~L~l~~~~~~~---~~~~l~~l~~~~~~L~~L~L~~~~~---~~~-l~~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 183 YTSLVSLNISCLASEV---SFSALERLVTRCPNLKSLKLNRAVP---LEK-LATLLQRAPQLEELGTGGY 245 (594)
T ss_dssp CCCCCEEECTTCCSCC---CHHHHHHHHHHCTTCCEEECCTTSC---HHH-HHHHHHHCTTCSEEECSBC
T ss_pred CCcCcEEEecccCCcC---CHHHHHHHHHhCCCCcEEecCCCCc---HHH-HHHHHhcCCcceEcccccc
Confidence 5667777666554100 0111222 23456677777766422 222 3344556677777776544
No 114
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.31 E-value=9.1e-15 Score=161.56 Aligned_cols=108 Identities=21% Similarity=0.273 Sum_probs=82.7
Q ss_pred cCCCCCCcEEEEecCCCCCCChhHhhccCCCeEEEeCCCCCCcCCCCCCcc-cceeeccccccceEeCCccccCCCCCCC
Q 038430 551 LQPPLNVEKLWILFNGGNILPKWLTSLTNLSDLKLVFCENCEQLPPLGKLP-LEKLELCHLKSVKRVGNEFLEIEESEDD 629 (677)
Q Consensus 551 l~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~~~~l~~l~~l~-L~~L~l~~~~~l~~i~~~~~~~~~~~~~ 629 (677)
+..+++|+.|+|++|.+..+|..++.+++|+.|+|++| .+..+|.++.++ |+.|+|++ +.++.+.
T Consensus 459 ~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~l~~l~~L~~L~Ls~-N~l~~~~------------ 524 (567)
T 1dce_A 459 LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN-ALENVDGVANLPRLQELLLCN-NRLQQSA------------ 524 (567)
T ss_dssp GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCGGGTTCSSCCEEECCS-SCCCSSS------------
T ss_pred ccccccCcEeecCcccccccchhhhcCCCCCEEECCCC-CCCCCcccCCCCCCcEEECCC-CCCCCCC------------
Confidence 55678999999999999999999999999999999998 677788899999 99999997 4455542
Q ss_pred CCCCCCCCcccCCCccceeeecccccCccccccCCccccCCCcccccC
Q 038430 630 PSSSSSSSSVTAFPKVKSLEIKELEEGNYRITRKENISIIPRLSSLRI 677 (677)
Q Consensus 630 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~i 677 (677)
.|.....+++|+.|++++++-...+.........+|+|+.|++
T Consensus 525 -----~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 525 -----AIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp -----TTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred -----CcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 0222467999999999998773332211122235899999864
No 115
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.30 E-value=6.6e-12 Score=121.33 Aligned_cols=131 Identities=19% Similarity=0.216 Sum_probs=110.7
Q ss_pred CCCceEEEEEEecCCCccc-ccccCCCcccEEEeCCCCCCCCCCccC-CcccCCCCCcCEEEecCccccccchh-hccCC
Q 038430 301 FGGKVRHLGLKFKGGASFP-MSIHGLNRLRTLLIDDESPPNSSLDKI-PENVGKLMHLKYLNLSELHIERLPKT-LCELY 377 (677)
Q Consensus 301 ~~~~l~~L~l~~~~~~~~p-~~~~~l~~L~~L~l~~~~l~~~~~~~l-p~~~~~l~~L~~L~Ls~~~i~~lp~~-i~~l~ 377 (677)
++..++.|++.+|.+..++ ..|..+++|++|++++ +.+..+ |..|..+++|++|+|++|.++.+|+. +.+++
T Consensus 30 l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~-----N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~ 104 (220)
T 2v9t_B 30 LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSN-----NQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLF 104 (220)
T ss_dssp CCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCS-----SCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCT
T ss_pred cCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCC-----CcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCC
Confidence 4678999999999998887 4789999999999996 334444 67899999999999999999999876 68999
Q ss_pred CcCEEEecCCCCcccc-CcccccccccceeecCccCCCcccC-CcCCCCCCCCccCceeeCCC
Q 038430 378 NLQKLDIRGCRNLREL-PTGIGKLKNMRSLLNGLTCSLKYMP-IGISKLTSLRTLDKFAVGGG 438 (677)
Q Consensus 378 ~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~l~~~~~~ 438 (677)
+|++|+|++|. +..+ |..+..+++|++|++++|. +..+| ..+..+++|++|++.++...
T Consensus 105 ~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 105 SLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp TCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 99999999999 5555 5679999999999999995 55555 45888999999998877643
No 116
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.30 E-value=9.3e-12 Score=121.12 Aligned_cols=121 Identities=27% Similarity=0.375 Sum_probs=58.4
Q ss_pred EEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccC-CcccCCCCCcCEEEecCccccccchh-hccCCCcCEEEec
Q 038430 308 LGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKI-PENVGKLMHLKYLNLSELHIERLPKT-LCELYNLQKLDIR 385 (677)
Q Consensus 308 L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~l-p~~~~~l~~L~~L~Ls~~~i~~lp~~-i~~l~~L~~L~L~ 385 (677)
++..++.+..+|..+. ++|++|++++ +.+..+ |..+..+++|++|+|++|.+..+|.. +..+++|++|+|+
T Consensus 24 v~c~~~~l~~ip~~~~--~~L~~L~Ls~-----n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 24 VDCRSKRHASVPAGIP--TNAQILYLHD-----NQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp EECTTSCCSSCCSCCC--TTCSEEECCS-----SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred eEccCCCcCccCCCCC--CCCCEEEcCC-----CccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 3444444444543332 4555555553 122222 33445555555555555555544433 3555555555555
Q ss_pred CCCCccccCcc-cccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCC
Q 038430 386 GCRNLRELPTG-IGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGG 437 (677)
Q Consensus 386 ~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~ 437 (677)
+|. +..+|.. +..+++|++|++++| .+..+|..+..+++|++|++.++..
T Consensus 97 ~N~-l~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N~l 147 (229)
T 3e6j_A 97 TNQ-LTVLPSAVFDRLVHLKELFMCCN-KLTELPRGIERLTHLTHLALDQNQL 147 (229)
T ss_dssp SSC-CCCCCTTTTTTCTTCCEEECCSS-CCCSCCTTGGGCTTCSEEECCSSCC
T ss_pred CCc-CCccChhHhCcchhhCeEeccCC-cccccCcccccCCCCCEEECCCCcC
Confidence 554 4444332 345555555555555 2345555555555555555554443
No 117
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.30 E-value=2e-12 Score=116.64 Aligned_cols=124 Identities=24% Similarity=0.255 Sum_probs=100.4
Q ss_pred CCceEEEEEEecCCC--cccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccc-cchhhccCCC
Q 038430 302 GGKVRHLGLKFKGGA--SFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIER-LPKTLCELYN 378 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~--~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~-lp~~i~~l~~ 378 (677)
+.+++.|+++++.+. .+|..+..+++|++|++++| .+..+ ..++.+++|++|++++|.++. +|..++.+++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-----~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 89 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-----GLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPN 89 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-----CCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTT
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-----CCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCC
Confidence 567889999999887 78888888999999999863 34444 567889999999999999886 7777888999
Q ss_pred cCEEEecCCCCccccC--cccccccccceeecCccCCCcccCC----cCCCCCCCCccCce
Q 038430 379 LQKLDIRGCRNLRELP--TGIGKLKNMRSLLNGLTCSLKYMPI----GISKLTSLRTLDKF 433 (677)
Q Consensus 379 L~~L~L~~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~~p~----~i~~l~~L~~L~l~ 433 (677)
|++|++++|. +..+| ..++.+++|++|++++| .+..+|. .++.+++|+.|++.
T Consensus 90 L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 90 LTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence 9999999998 66654 67889999999999998 4555654 57778888887764
No 118
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.29 E-value=9.7e-12 Score=121.00 Aligned_cols=131 Identities=24% Similarity=0.327 Sum_probs=112.3
Q ss_pred cCCCceEEEEEEecCCCcc-cccccCCCcccEEEeCCCCCCCCCCccCCcc-cCCCCCcCEEEecCccccccchh-hccC
Q 038430 300 AFGGKVRHLGLKFKGGASF-PMSIHGLNRLRTLLIDDESPPNSSLDKIPEN-VGKLMHLKYLNLSELHIERLPKT-LCEL 376 (677)
Q Consensus 300 ~~~~~l~~L~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~-~~~l~~L~~L~Ls~~~i~~lp~~-i~~l 376 (677)
..+.+++.|++++|.+..+ |..+..+++|++|++++ +.+..+|.. +..+++|++|+|++|.++.+|+. +..+
T Consensus 37 ~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~-----N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l 111 (229)
T 3e6j_A 37 GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGS-----NQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRL 111 (229)
T ss_dssp CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-----SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCC-----CCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcc
Confidence 3468899999999999887 57789999999999996 445667644 68999999999999999988765 7899
Q ss_pred CCcCEEEecCCCCccccCcccccccccceeecCccCCCcccC-CcCCCCCCCCccCceeeCC
Q 038430 377 YNLQKLDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMP-IGISKLTSLRTLDKFAVGG 437 (677)
Q Consensus 377 ~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~l~~~~~ 437 (677)
++|++|++++|. +..+|..+..+++|++|++++| .+..+| ..+..+++|+.|++.++..
T Consensus 112 ~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 112 VHLKELFMCCNK-LTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp TTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred hhhCeEeccCCc-ccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCCc
Confidence 999999999998 8899999999999999999999 455666 4578889999988876654
No 119
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.29 E-value=2.7e-12 Score=122.93 Aligned_cols=121 Identities=26% Similarity=0.409 Sum_probs=83.3
Q ss_pred EEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCc-ccCCCCCcCEEEecCccccccchh-hccCCCcCEEEe
Q 038430 307 HLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPE-NVGKLMHLKYLNLSELHIERLPKT-LCELYNLQKLDI 384 (677)
Q Consensus 307 ~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~-~~~~l~~L~~L~Ls~~~i~~lp~~-i~~l~~L~~L~L 384 (677)
.+...++++..+|..+ .++|++|+++++ .+..+|. .++.+++|++|++++|.++.+|.. +..+++|++|++
T Consensus 11 ~v~c~~~~l~~~p~~~--~~~l~~L~l~~n-----~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 83 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGI--PAQTTYLDLETN-----SLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNL 83 (208)
T ss_dssp EEECCSSCCSSCCSCC--CTTCSEEECCSS-----CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred EEEecCCCccCCCCCC--CCCCcEEEcCCC-----ccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEEC
Confidence 4566666777777444 357888888853 3444544 357788888888888888877664 577888888888
Q ss_pred cCCCCccccCcc-cccccccceeecCccCCCcccCCc-CCCCCCCCccCceeeC
Q 038430 385 RGCRNLRELPTG-IGKLKNMRSLLNGLTCSLKYMPIG-ISKLTSLRTLDKFAVG 436 (677)
Q Consensus 385 ~~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L~l~~~~ 436 (677)
++|. +..+|.. ++.+++|++|++++|. +..+|.. ++.+++|++|++.++.
T Consensus 84 s~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 135 (208)
T 2o6s_A 84 STNQ-LQSLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQ 135 (208)
T ss_dssp CSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCc-CCccCHhHhcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCc
Confidence 8887 6666654 5778888888888874 4445443 5667777777665544
No 120
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.28 E-value=1.4e-11 Score=119.11 Aligned_cols=124 Identities=14% Similarity=0.131 Sum_probs=68.3
Q ss_pred EEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccC-C-cccCCCCCcCEEEecCccccccch-hhccCCCcCEEE
Q 038430 307 HLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKI-P-ENVGKLMHLKYLNLSELHIERLPK-TLCELYNLQKLD 383 (677)
Q Consensus 307 ~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~l-p-~~~~~l~~L~~L~Ls~~~i~~lp~-~i~~l~~L~~L~ 383 (677)
.++++++.+..+|..+. ..+++|++++ +.+..+ | ..+..+++|++|++++|.++.+++ .+.++++|++|+
T Consensus 15 ~l~~s~n~l~~iP~~~~--~~~~~L~L~~-----N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~ 87 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHIP--QYTAELRLNN-----NEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEIL 87 (220)
T ss_dssp EEECCSSCCSSCCSCCC--TTCSEEECCS-----SCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred EeEeCCCCcccCccCCC--CCCCEEEcCC-----CcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEE
Confidence 45555666666654432 3345666663 233333 2 224566666666666666665544 466666666666
Q ss_pred ecCCCCccccCc-ccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCC
Q 038430 384 IRGCRNLRELPT-GIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGG 438 (677)
Q Consensus 384 L~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~ 438 (677)
|++|. +..+|. .+..+++|++|++++|......|..+..+++|++|++.++...
T Consensus 88 Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 142 (220)
T 2v70_A 88 LTSNR-LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT 142 (220)
T ss_dssp CCSSC-CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCC
T ss_pred CCCCc-cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCC
Confidence 66666 444433 3566666666666666433333455666666666665555443
No 121
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.27 E-value=1.3e-11 Score=119.28 Aligned_cols=133 Identities=18% Similarity=0.128 Sum_probs=111.3
Q ss_pred cCCCceEEEEEEecCCCccc--ccccCCCcccEEEeCCCCCCCCCCccCCc-ccCCCCCcCEEEecCccccccchh-hcc
Q 038430 300 AFGGKVRHLGLKFKGGASFP--MSIHGLNRLRTLLIDDESPPNSSLDKIPE-NVGKLMHLKYLNLSELHIERLPKT-LCE 375 (677)
Q Consensus 300 ~~~~~l~~L~l~~~~~~~~p--~~~~~l~~L~~L~l~~~~l~~~~~~~lp~-~~~~l~~L~~L~Ls~~~i~~lp~~-i~~ 375 (677)
.++..++.|++++|.+..++ ..+..+++|++|++++ +.+..++. .+..+++|++|+|++|.++.+|+. +.+
T Consensus 29 ~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~-----N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 103 (220)
T 2v70_A 29 HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSN-----NKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKG 103 (220)
T ss_dssp CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCS-----SCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTT
T ss_pred CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCC-----CcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcC
Confidence 34667889999999998874 4588999999999995 44555554 689999999999999999987664 899
Q ss_pred CCCcCEEEecCCCCcccc-CcccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCC
Q 038430 376 LYNLQKLDIRGCRNLREL-PTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGG 438 (677)
Q Consensus 376 l~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~ 438 (677)
+++|++|+|++|. +..+ |..+..+++|++|++++|......|..+..+++|++|++.++...
T Consensus 104 l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 104 LESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 9999999999999 5555 678999999999999999655445788999999999998877654
No 122
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.26 E-value=9.7e-12 Score=119.08 Aligned_cols=131 Identities=28% Similarity=0.403 Sum_probs=108.7
Q ss_pred cCCCceEEEEEEecCCCcccc-cccCCCcccEEEeCCCCCCCCCCccCCcc-cCCCCCcCEEEecCccccccchh-hccC
Q 038430 300 AFGGKVRHLGLKFKGGASFPM-SIHGLNRLRTLLIDDESPPNSSLDKIPEN-VGKLMHLKYLNLSELHIERLPKT-LCEL 376 (677)
Q Consensus 300 ~~~~~l~~L~l~~~~~~~~p~-~~~~l~~L~~L~l~~~~l~~~~~~~lp~~-~~~l~~L~~L~Ls~~~i~~lp~~-i~~l 376 (677)
..+.+++.|++.++.+..++. .+..+++|++|++++ +.+..+|.. +..+++|++|++++|.++.+|+. +.++
T Consensus 25 ~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-----n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 99 (208)
T 2o6s_A 25 GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGG-----NKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKL 99 (208)
T ss_dssp CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCS-----SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCC-----CccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCc
Confidence 346789999999999988874 578999999999996 345566554 68899999999999999988765 7899
Q ss_pred CCcCEEEecCCCCccccCcc-cccccccceeecCccCCCcccCCc-CCCCCCCCccCceeeCC
Q 038430 377 YNLQKLDIRGCRNLRELPTG-IGKLKNMRSLLNGLTCSLKYMPIG-ISKLTSLRTLDKFAVGG 437 (677)
Q Consensus 377 ~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L~l~~~~~ 437 (677)
++|++|++++|. +..+|.. +..+++|++|++++|. +..+|.. +..+++|+.|++.++..
T Consensus 100 ~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~ 160 (208)
T 2o6s_A 100 TQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPW 160 (208)
T ss_dssp TTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred cCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCCe
Confidence 999999999998 7777664 7899999999999995 5556654 78899999999887654
No 123
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.24 E-value=6e-12 Score=143.42 Aligned_cols=119 Identities=20% Similarity=0.153 Sum_probs=83.6
Q ss_pred cCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcCEEEecCCCCccc
Q 038430 313 KGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKLDIRGCRNLRE 392 (677)
Q Consensus 313 ~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~ 392 (677)
+.+...+..+..++.|+.|++++ +.+..+|..+..+++|++|+|++|.|+.+|..|++|++|++|+|++|. +..
T Consensus 211 n~~~~~~~~~~~l~~L~~L~Ls~-----n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~ 284 (727)
T 4b8c_D 211 NRMVMPKDSKYDDQLWHALDLSN-----LQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTS 284 (727)
T ss_dssp -----------CCCCCCEEECTT-----SCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSS
T ss_pred cceecChhhhccCCCCcEEECCC-----CCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCc
Confidence 33333456677778888888874 345567777777888888888888888888778888888888888887 667
Q ss_pred cCcccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCC
Q 038430 393 LPTGIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGG 438 (677)
Q Consensus 393 lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~ 438 (677)
+|..++.|++|++|++++| .+..+|..++.+++|++|++.++...
T Consensus 285 lp~~~~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 285 LPAELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp CCSSGGGGTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSCCC
T ss_pred cChhhcCCCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCCccC
Confidence 7887888888888888887 45677877888888888887776654
No 124
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.24 E-value=1.2e-11 Score=115.06 Aligned_cols=127 Identities=22% Similarity=0.164 Sum_probs=93.4
Q ss_pred CCceEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhh-ccCCCcC
Q 038430 302 GGKVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTL-CELYNLQ 380 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i-~~l~~L~ 380 (677)
..+++.|++++|.+..+|......++|++|++++| .+..+ ..++.+++|++|++++|.++.+|+.+ +.+++|+
T Consensus 18 ~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N-----~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDN-----EIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp TTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSS-----CCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred cCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCC-----CCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 56788888888888777643333348888888853 34444 46778888888888888888777654 7888888
Q ss_pred EEEecCCCCccccCc--ccccccccceeecCccCCCcccCCc----CCCCCCCCccCceeeC
Q 038430 381 KLDIRGCRNLRELPT--GIGKLKNMRSLLNGLTCSLKYMPIG----ISKLTSLRTLDKFAVG 436 (677)
Q Consensus 381 ~L~L~~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~p~~----i~~l~~L~~L~l~~~~ 436 (677)
+|++++|. +..+|. .++.+++|++|++++|. +..+|.. ++.+++|+.|++..+.
T Consensus 92 ~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 92 ELILTNNS-LVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp EEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred EEECCCCc-CCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 88888887 677776 67888888888888884 5566654 6677777777776654
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.20 E-value=3.4e-11 Score=113.61 Aligned_cols=125 Identities=21% Similarity=0.263 Sum_probs=99.7
Q ss_pred EEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcc--cCCCCCcCEEEecCcccccc-chhhccCCCcCEE
Q 038430 306 RHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPEN--VGKLMHLKYLNLSELHIERL-PKTLCELYNLQKL 382 (677)
Q Consensus 306 ~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~--~~~l~~L~~L~Ls~~~i~~l-p~~i~~l~~L~~L 382 (677)
+.++++++++..+|..+.. +|++|++++ +.+..++.. ++.+++|++|+|++|.++.+ |..+.++++|++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~-----n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 83 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLND-----NELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQEL 83 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCS-----CCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCC-----CcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEE
Confidence 4678888888888865543 899999985 445666543 78899999999999999866 6679999999999
Q ss_pred EecCCCCccccCc-ccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCC
Q 038430 383 DIRGCRNLRELPT-GIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGG 438 (677)
Q Consensus 383 ~L~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~ 438 (677)
+|++|. +..+|. .+..+++|++|++++|......|..++.+++|++|++.++...
T Consensus 84 ~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 84 QLGENK-IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp ECCSCC-CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred ECCCCc-CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 999998 555554 5888999999999999665566778888999999988776654
No 126
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.19 E-value=3.3e-11 Score=125.90 Aligned_cols=124 Identities=18% Similarity=0.159 Sum_probs=60.4
Q ss_pred EEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcc-cC-CCCCcCEEEecCccccccch-hhccCCCcCEEE
Q 038430 307 HLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPEN-VG-KLMHLKYLNLSELHIERLPK-TLCELYNLQKLD 383 (677)
Q Consensus 307 ~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~-~~-~l~~L~~L~Ls~~~i~~lp~-~i~~l~~L~~L~ 383 (677)
.+++.++.+..+|..+. ..++.|++++ +.+..++.. +. .+.+|++|+|++|.|+.+|+ .+.++++|++|+
T Consensus 22 ~l~c~~~~l~~iP~~~~--~~l~~L~Ls~-----N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~ 94 (361)
T 2xot_A 22 ILSCSKQQLPNVPQSLP--SYTALLDLSH-----NNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLD 94 (361)
T ss_dssp EEECCSSCCSSCCSSCC--TTCSEEECCS-----SCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred EEEeCCCCcCccCccCC--CCCCEEECCC-----CCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEE
Confidence 34444555555554332 2355555553 223333322 33 55555555555555554443 355555555555
Q ss_pred ecCCCCccccCc-ccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCC
Q 038430 384 IRGCRNLRELPT-GIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGG 438 (677)
Q Consensus 384 L~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~ 438 (677)
|++|. +..+|. .+..+++|++|++++|......|..+..+.+|+.|++.++...
T Consensus 95 Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~ 149 (361)
T 2xot_A 95 LSSNH-LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS 149 (361)
T ss_dssp CCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCc-CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC
Confidence 55555 444433 3455555555555555332222444555555555555555443
No 127
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.19 E-value=4.4e-11 Score=124.93 Aligned_cols=132 Identities=20% Similarity=0.269 Sum_probs=108.4
Q ss_pred cCCCceEEEEEEecCCCcccc-ccc-CCCcccEEEeCCCCCCCCCCccCC-cccCCCCCcCEEEecCccccccch-hhcc
Q 038430 300 AFGGKVRHLGLKFKGGASFPM-SIH-GLNRLRTLLIDDESPPNSSLDKIP-ENVGKLMHLKYLNLSELHIERLPK-TLCE 375 (677)
Q Consensus 300 ~~~~~l~~L~l~~~~~~~~p~-~~~-~l~~L~~L~l~~~~l~~~~~~~lp-~~~~~l~~L~~L~Ls~~~i~~lp~-~i~~ 375 (677)
.++..++.|++++|.+..++. .+. .+++|++|++++ +.+..++ ..|..+++|++|+|++|.++.+|+ .+.+
T Consensus 36 ~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~-----N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 110 (361)
T 2xot_A 36 SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSH-----NHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSD 110 (361)
T ss_dssp SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCS-----SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCC-----CcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCC
Confidence 456779999999999988874 455 899999999995 4455555 458999999999999999998876 4899
Q ss_pred CCCcCEEEecCCCCcccc-CcccccccccceeecCccCCCcccCCcC----CCCCCCCccCceeeCCC
Q 038430 376 LYNLQKLDIRGCRNLREL-PTGIGKLKNMRSLLNGLTCSLKYMPIGI----SKLTSLRTLDKFAVGGG 438 (677)
Q Consensus 376 l~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~~i----~~l~~L~~L~l~~~~~~ 438 (677)
+++|++|+|++|. +..+ |..+..+++|++|++++| .+..+|..+ ..+.+|+.|++.++...
T Consensus 111 l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 111 LQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp CTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 9999999999999 5555 667999999999999999 566777654 56888888888877655
No 128
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.16 E-value=4.2e-11 Score=110.35 Aligned_cols=107 Identities=25% Similarity=0.317 Sum_probs=86.9
Q ss_pred CCCcccEEEeCCCCCCCCCCc--cCCcccCCCCCcCEEEecCccccccchhhccCCCcCEEEecCCCCccc-cCcccccc
Q 038430 324 GLNRLRTLLIDDESPPNSSLD--KIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKLDIRGCRNLRE-LPTGIGKL 400 (677)
Q Consensus 324 ~l~~L~~L~l~~~~l~~~~~~--~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~-lp~~i~~l 400 (677)
..++|+.|++++| .+. .+|..+..+++|++|++++|.++.+ ..+..+++|++|++++|. +.. +|..+..+
T Consensus 22 ~~~~L~~L~l~~n-----~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l 94 (168)
T 2ell_A 22 TPAAVRELVLDNC-----KSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENR-IFGGLDMLAEKL 94 (168)
T ss_dssp CTTSCSEEECCSC-----BCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCC-CCSCCCHHHHHC
T ss_pred CcccCCEEECCCC-----CCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCc-CchHHHHHHhhC
Confidence 3578999999963 344 7787788899999999999999877 778999999999999998 554 77777789
Q ss_pred cccceeecCccCCCcccC--CcCCCCCCCCccCceeeCCC
Q 038430 401 KNMRSLLNGLTCSLKYMP--IGISKLTSLRTLDKFAVGGG 438 (677)
Q Consensus 401 ~~L~~L~l~~~~~~~~~p--~~i~~l~~L~~L~l~~~~~~ 438 (677)
++|++|++++| .+..+| ..++.+++|++|++.++...
T Consensus 95 ~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~ 133 (168)
T 2ell_A 95 PNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCEVT 133 (168)
T ss_dssp TTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSGGG
T ss_pred CCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCcCc
Confidence 99999999999 466655 56788888888887766544
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.15 E-value=3e-11 Score=108.90 Aligned_cols=128 Identities=19% Similarity=0.222 Sum_probs=97.0
Q ss_pred CCcccEEEeCCCCCCCCCCc--cCCcccCCCCCcCEEEecCccccccchhhccCCCcCEEEecCCCCccc-cCccccccc
Q 038430 325 LNRLRTLLIDDESPPNSSLD--KIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKLDIRGCRNLRE-LPTGIGKLK 401 (677)
Q Consensus 325 l~~L~~L~l~~~~l~~~~~~--~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~-lp~~i~~l~ 401 (677)
.++|+.|+++++ .+. .+|..++.+++|++|++++|.++.+ ..++.+++|++|++++|. +.. +|..++.++
T Consensus 16 ~~~l~~L~l~~n-----~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~ 88 (149)
T 2je0_A 16 PSDVKELVLDNS-----RSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNR-VSGGLEVLAEKCP 88 (149)
T ss_dssp GGGCSEEECTTC-----BCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSC-CCSCTHHHHHHCT
T ss_pred CccCeEEEccCC-----cCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCc-ccchHHHHhhhCC
Confidence 478999999963 333 7788889999999999999999887 778999999999999998 555 888788899
Q ss_pred ccceeecCccCCCcccC--CcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCccccc
Q 038430 402 NMRSLLNGLTCSLKYMP--IGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIE 462 (677)
Q Consensus 402 ~L~~L~l~~~~~~~~~p--~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~ 462 (677)
+|++|++++|. +..+| ..++.+++|++|++.++.....+ ......+..+++|+.|+++
T Consensus 89 ~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~--~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 89 NLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCEVTNLN--DYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCGGGGST--THHHHHHHHCTTCCEETTB
T ss_pred CCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCcccchH--HHHHHHHHHCCCcccccCC
Confidence 99999999995 55544 67888889999888877654310 0001245556666655543
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.14 E-value=1.2e-10 Score=109.87 Aligned_cols=122 Identities=23% Similarity=0.298 Sum_probs=95.8
Q ss_pred EEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccch-hhccCCCcCEEEec
Q 038430 307 HLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPK-TLCELYNLQKLDIR 385 (677)
Q Consensus 307 ~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~-~i~~l~~L~~L~L~ 385 (677)
.+++.++.+..+|..+. ++|++|++++ +.+..+|..+..+++|++|+|++|.|+.+++ .|.++++|++|+|+
T Consensus 14 ~l~~~~~~l~~ip~~~~--~~l~~L~L~~-----n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls 86 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKGIP--RDVTELYLDG-----NQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS 86 (193)
T ss_dssp EEECTTSCCSSCCSCCC--TTCCEEECCS-----SCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred EEEcCCCCCCcCCCCCC--CCCCEEECCC-----CcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECC
Confidence 56777788888886543 5889999885 4556788888889999999999999887764 58889999999999
Q ss_pred CCCCccccCc-ccccccccceeecCccCCCcccCC-cCCCCCCCCccCceeeCC
Q 038430 386 GCRNLRELPT-GIGKLKNMRSLLNGLTCSLKYMPI-GISKLTSLRTLDKFAVGG 437 (677)
Q Consensus 386 ~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~l~~~~~ 437 (677)
+|. +..+|. .+..+++|++|++++|. +..+|. .+..+++|+.|++.++..
T Consensus 87 ~N~-l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 87 YNR-LRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp SSC-CCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCc-cCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCCe
Confidence 988 666654 68889999999999984 556665 477888888888776654
No 131
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.13 E-value=6.6e-11 Score=130.67 Aligned_cols=99 Identities=21% Similarity=0.180 Sum_probs=58.5
Q ss_pred eEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcCEEEe
Q 038430 305 VRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKLDI 384 (677)
Q Consensus 305 l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L 384 (677)
++.|++++|.+..+|. +..+++|+.|++++ +.+..+|..++.+++|++|+|++|.++.+| .++++++|++|+|
T Consensus 443 L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~-----N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~L 515 (567)
T 1dce_A 443 VRVLHLAHKDLTVLCH-LEQLLLVTHLDLSH-----NRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLL 515 (567)
T ss_dssp CSEEECTTSCCSSCCC-GGGGTTCCEEECCS-----SCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEEC
T ss_pred ceEEEecCCCCCCCcC-ccccccCcEeecCc-----ccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEEC
Confidence 5556666666655554 55666666666653 233355555666666666666666666555 5666666666666
Q ss_pred cCCCCcccc--CcccccccccceeecCcc
Q 038430 385 RGCRNLREL--PTGIGKLKNMRSLLNGLT 411 (677)
Q Consensus 385 ~~~~~l~~l--p~~i~~l~~L~~L~l~~~ 411 (677)
++|. +..+ |..++.|++|+.|++++|
T Consensus 516 s~N~-l~~~~~p~~l~~l~~L~~L~L~~N 543 (567)
T 1dce_A 516 CNNR-LQQSAAIQPLVSCPRLVLLNLQGN 543 (567)
T ss_dssp CSSC-CCSSSTTGGGGGCTTCCEEECTTS
T ss_pred CCCC-CCCCCCcHHHhcCCCCCEEEecCC
Confidence 6665 4444 555666666666666666
No 132
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.08 E-value=1.1e-10 Score=108.31 Aligned_cols=132 Identities=18% Similarity=0.196 Sum_probs=97.6
Q ss_pred cccCCCcccEEEeCCCCCCCCCCccCCcccCCCC-CcCEEEecCccccccchhhccCCCcCEEEecCCCCccccCccc-c
Q 038430 321 SIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLM-HLKYLNLSELHIERLPKTLCELYNLQKLDIRGCRNLRELPTGI-G 398 (677)
Q Consensus 321 ~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~-~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i-~ 398 (677)
.+..+++|+.|++++| .+..+|. +..+. +|++|++++|.++.+ +.++.+++|++|++++|. +..+|..+ +
T Consensus 14 ~~~~~~~L~~L~l~~n-----~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~ 85 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGY-----KIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNR-ICRIGEGLDQ 85 (176)
T ss_dssp EEECTTSCEEEECTTS-----CCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSC-CCEECSCHHH
T ss_pred hcCCcCCceEEEeeCC-----CCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCc-ccccCcchhh
Confidence 4667889999999963 4445654 54555 999999999999987 678999999999999998 77888655 8
Q ss_pred cccccceeecCccCCCcccCC--cCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccccC
Q 038430 399 KLKNMRSLLNGLTCSLKYMPI--GISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIEG 463 (677)
Q Consensus 399 ~l~~L~~L~l~~~~~~~~~p~--~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~ 463 (677)
.+++|++|++++| .+..+|. .++.+++|+.|++.++.....+ ......+..+++|+.|+++.
T Consensus 86 ~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~--~~~~~~~~~l~~L~~Ld~~~ 149 (176)
T 1a9n_A 86 ALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNPVTNKK--HYRLYVIYKVPQVRVLDFQK 149 (176)
T ss_dssp HCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSGGGGST--THHHHHHHHCTTCSEETTEE
T ss_pred cCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCCCCCcH--hHHHHHHHHCCccceeCCCc
Confidence 9999999999999 4677776 6888888888888777654210 00011245555566655554
No 133
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.07 E-value=8.2e-10 Score=113.70 Aligned_cols=264 Identities=11% Similarity=0.055 Sum_probs=153.3
Q ss_pred CCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccch-hhcc--------CCCcCEEEecCCCCccccCc
Q 038430 325 LNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPK-TLCE--------LYNLQKLDIRGCRNLRELPT 395 (677)
Q Consensus 325 l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~-~i~~--------l~~L~~L~L~~~~~l~~lp~ 395 (677)
+++|++|++++|. +..+...-+.++.++++.+..+ .+|. .|.+ +++|+.|+|.+ . +..++.
T Consensus 48 l~~L~~LdLs~n~-----i~~~~~~~~~~~~~~~~~~~~~---~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~-i~~I~~ 117 (329)
T 3sb4_A 48 FPSLKVLDISNAE-----IKMYSGKAGTYPNGKFYIYMAN---FVPAYAFSNVVNGVTKGKQTLEKVILSE-K-IKNIED 117 (329)
T ss_dssp CTTCCEEEEEEEE-----ECCEEESSSSSGGGCCEEECTT---EECTTTTEEEETTEEEECTTCCC-CBCT-T-CCEECT
T ss_pred hccCeEEecCcce-----eEEecCcccccccccccccccc---ccCHHHhcccccccccccCCCcEEECCc-c-ccchhH
Confidence 6678888887532 2211000112222444554444 3333 3666 88999999987 4 777765
Q ss_pred -ccccccccceeecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCC-cccccCccCCCChhHH
Q 038430 396 -GIGKLKNMRSLLNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIR-KCGIEGLSNVSHLDEA 473 (677)
Q Consensus 396 -~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~-~L~i~~~~~~~~~~~~ 473 (677)
.+..+++|+.|++.+|.....-+..+..+.++..+......... ......-..+.++..|+ .+.+.. ...++..
T Consensus 118 ~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~-~~~~i~~~~f~~~~~L~~~i~~~~---~~~l~~~ 193 (329)
T 3sb4_A 118 AAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYR-FKNRWEHFAFIEGEPLETTIQVGA---MGKLEDE 193 (329)
T ss_dssp TTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHH-TSTTTTTSCEEESCCCEEEEEECT---TCCHHHH
T ss_pred HHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhh-ccccccccccccccccceeEEecC---CCcHHHH
Confidence 47888999999998884333333446666555555433210000 00001111222333333 122222 2233333
Q ss_pred HHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhhcchhhHHHHhhhcCC
Q 038430 474 ERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERRRKNEKDEQLLEALQP 553 (677)
Q Consensus 474 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 553 (677)
....-....++..+.+.+. -......... ..
T Consensus 194 ~~~~~~~~~~~~~l~~~~~-----------------------------------------------l~~~~~~~l~--~~ 224 (329)
T 3sb4_A 194 IMKAGLQPRDINFLTIEGK-----------------------------------------------LDNADFKLIR--DY 224 (329)
T ss_dssp HHHTTCCGGGCSEEEEEEC-----------------------------------------------CCHHHHHHHH--HH
T ss_pred HhhcccCccccceEEEeee-----------------------------------------------ecHHHHHHHH--Hh
Confidence 3333334566777777654 0001111111 12
Q ss_pred CCCCcEEEEecCCCCCCChh-HhhccCCCeEEEeCCCCCCcCCC--CCCcc-cc-eeeccccccceEeCCccccCCCCCC
Q 038430 554 PLNVEKLWILFNGGNILPKW-LTSLTNLSDLKLVFCENCEQLPP--LGKLP-LE-KLELCHLKSVKRVGNEFLEIEESED 628 (677)
Q Consensus 554 ~~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~c~~~~~l~~--l~~l~-L~-~L~l~~~~~l~~i~~~~~~~~~~~~ 628 (677)
+++|+.|+|.+|.+..+|.. +..+++|+.|++.++ ++.++. +.+++ |+ .|.+.+ +++.|+...+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF------- 293 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAF------- 293 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTT-------
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchhhh-------
Confidence 68999999999998888876 568999999999986 777775 88899 99 999986 7899976655
Q ss_pred CCCCCCCCCcccCCCccceeeecccccCccccccCCccccCCCccccc
Q 038430 629 DPSSSSSSSSVTAFPKVKSLEIKELEEGNYRITRKENISIIPRLSSLR 676 (677)
Q Consensus 629 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~ 676 (677)
..+++|++|.+....-+.+.. ..+..+++|++|+
T Consensus 294 -----------~~c~~L~~l~l~~n~i~~I~~---~aF~~~~~L~~ly 327 (329)
T 3sb4_A 294 -----------MGCDNLRYVLATGDKITTLGD---ELFGNGVPSKLIY 327 (329)
T ss_dssp -----------TTCTTEEEEEECSSCCCEECT---TTTCTTCCCCEEE
T ss_pred -----------hCCccCCEEEeCCCccCccch---hhhcCCcchhhhc
Confidence 678999999986543233332 3334688888875
No 134
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.06 E-value=5e-10 Score=105.53 Aligned_cols=123 Identities=15% Similarity=0.176 Sum_probs=92.7
Q ss_pred cEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchh--hccCCCcCEEEecCCCCccccCccccccccccee
Q 038430 329 RTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKT--LCELYNLQKLDIRGCRNLRELPTGIGKLKNMRSL 406 (677)
Q Consensus 329 ~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~--i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L 406 (677)
+++++++ +.+..+|..+.. +|++|++++|.++.+|+. ++.+++|++|+|++|......|..+..+++|++|
T Consensus 11 ~~l~~s~-----~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 83 (192)
T 1w8a_A 11 TTVDCTG-----RGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQEL 83 (192)
T ss_dssp TEEECTT-----SCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred CEEEcCC-----CCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEE
Confidence 6788874 566788876653 899999999999988764 8999999999999998434447789999999999
Q ss_pred ecCccCCCcccCCcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccccC
Q 038430 407 LNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIEG 463 (677)
Q Consensus 407 ~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~ 463 (677)
++++|......|..++.+++|++|++.++.... .....+..+++|+.|.+.+
T Consensus 84 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-----~~~~~~~~l~~L~~L~L~~ 135 (192)
T 1w8a_A 84 QLGENKIKEISNKMFLGLHQLKTLNLYDNQISC-----VMPGSFEHLNSLTSLNLAS 135 (192)
T ss_dssp ECCSCCCCEECSSSSTTCTTCCEEECCSSCCCE-----ECTTSSTTCTTCCEEECTT
T ss_pred ECCCCcCCccCHHHhcCCCCCCEEECCCCcCCe-----eCHHHhhcCCCCCEEEeCC
Confidence 999996444445558899999999988876652 2233444555555555544
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.05 E-value=1.4e-12 Score=123.89 Aligned_cols=137 Identities=20% Similarity=0.196 Sum_probs=62.5
Q ss_pred ccCCcccCCCCCcCEEEecCccccccchhhccCCCcCEEEecCCCCccccCcccccccccceeecCccCCCcccCCcCCC
Q 038430 344 DKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKLDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPIGISK 423 (677)
Q Consensus 344 ~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~ 423 (677)
..+|..++.+++|++|++++|.++.+| .+.++++|++|++++|. +..+|..+..+++|++|++++| .+..+| .++.
T Consensus 38 ~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N-~l~~l~-~~~~ 113 (198)
T 1ds9_A 38 EKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYN-QIASLS-GIEK 113 (198)
T ss_dssp CCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEE-ECCCHH-HHHH
T ss_pred hhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCC-cCCcCC-cccc
Confidence 333334444555555555555554444 44455555555555544 4444444444455555555554 233333 3444
Q ss_pred CCCCCccCceeeCCCcCCCCcccccccccCCcCCcccccCccCC------CChhHHHHhhccCCcccCceE
Q 038430 424 LTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIEGLSNV------SHLDEAERLELKNMENLLHLY 488 (677)
Q Consensus 424 l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~------~~~~~~~~~~l~~~~~L~~L~ 488 (677)
+++|+.|++.++.... ...+..+..+++|+.|.+.+..-. ..........+..+++|+.|+
T Consensus 114 l~~L~~L~l~~N~i~~----~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 114 LVNLRVLYMSNNKITN----WGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHSSEEEESEEECCC----HHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCCCCEEECCCCcCCc----hhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 4455555554444331 111234445555555555542100 000122223356677777765
No 136
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.04 E-value=9.7e-10 Score=103.58 Aligned_cols=121 Identities=18% Similarity=0.291 Sum_probs=94.4
Q ss_pred cEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcCEEEecCCCCccccC-cccccccccceee
Q 038430 329 RTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKLDIRGCRNLRELP-TGIGKLKNMRSLL 407 (677)
Q Consensus 329 ~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~ 407 (677)
++++++ ++.+..+|..+. .+|++|++++|.++.+|..+.++++|++|++++|. +..++ ..+..+++|++|+
T Consensus 13 ~~l~~~-----~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~ 84 (193)
T 2wfh_A 13 TVVRCS-----NKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLI 84 (193)
T ss_dssp TEEECT-----TSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEE
T ss_pred CEEEcC-----CCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCc-CCEeCHhHccCCCCCCEEE
Confidence 567777 456778887654 68999999999999999999999999999999998 66665 4699999999999
Q ss_pred cCccCCCcccC-CcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccccC
Q 038430 408 NGLTCSLKYMP-IGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIEG 463 (677)
Q Consensus 408 l~~~~~~~~~p-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~ 463 (677)
+++|. +..+| ..++.+++|++|++.++.... .....+..+.+|+.|.+.+
T Consensus 85 Ls~N~-l~~i~~~~f~~l~~L~~L~L~~N~l~~-----~~~~~~~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 85 LSYNR-LRCIPPRTFDGLKSLRLLSLHGNDISV-----VPEGAFNDLSALSHLAIGA 135 (193)
T ss_dssp CCSSC-CCBCCTTTTTTCTTCCEEECCSSCCCB-----CCTTTTTTCTTCCEEECCS
T ss_pred CCCCc-cCEeCHHHhCCCCCCCEEECCCCCCCe-----eChhhhhcCccccEEEeCC
Confidence 99995 44554 568999999999998877653 2223345555566665554
No 137
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.98 E-value=2.4e-09 Score=99.35 Aligned_cols=124 Identities=28% Similarity=0.395 Sum_probs=94.7
Q ss_pred EEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCc-ccCCCCCcCEEEecCccccccchh-hccCCCcCEEE
Q 038430 306 RHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPE-NVGKLMHLKYLNLSELHIERLPKT-LCELYNLQKLD 383 (677)
Q Consensus 306 ~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~-~~~~l~~L~~L~Ls~~~i~~lp~~-i~~l~~L~~L~ 383 (677)
+.+++.++++..+|..+ .++|+.|++++ +.+..+|. .++.+++|++|++++|.++.+|+. +..+++|++|+
T Consensus 10 ~~l~~~~~~l~~~p~~~--~~~l~~L~l~~-----n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 82 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGI--PSSATRLELES-----NKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILY 82 (177)
T ss_dssp TEEECCSSCCSSCCTTC--CTTCSEEECCS-----SCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CEEEecCCCCccCCCCC--CCCCcEEEeCC-----CcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEE
Confidence 46777778888887544 36899999986 33445554 468889999999999999887765 68899999999
Q ss_pred ecCCCCccccCcc-cccccccceeecCccCCCcccCCc-CCCCCCCCccCceeeCCC
Q 038430 384 IRGCRNLRELPTG-IGKLKNMRSLLNGLTCSLKYMPIG-ISKLTSLRTLDKFAVGGG 438 (677)
Q Consensus 384 L~~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L~l~~~~~~ 438 (677)
+++|. +..+|.. +..+++|++|++++| .+..+|.. +..+++|++|++.++...
T Consensus 83 l~~N~-l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 83 LHENK-LQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCCC-ccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCCee
Confidence 99988 6666654 688999999999998 45566655 577888888888766543
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.96 E-value=6.2e-12 Score=119.43 Aligned_cols=148 Identities=20% Similarity=0.198 Sum_probs=111.7
Q ss_pred ceEEEEEEec--CCCcccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCCCcCE
Q 038430 304 KVRHLGLKFK--GGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQK 381 (677)
Q Consensus 304 ~l~~L~l~~~--~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~ 381 (677)
.++...+.+. .+..+|..+..+++|++|++++ +.+..+| .+..+++|++|++++|.++.+|..+..+++|++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~-----n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~ 97 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALST-----NNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEE 97 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSE-----EEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSE
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCC-----CCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCE
Confidence 3444555443 5666777889999999999985 3455577 788899999999999999999988888899999
Q ss_pred EEecCCCCccccCcccccccccceeecCccCCCcccCC--cCCCCCCCCccCceeeCCCcCCC-----CcccccccccCC
Q 038430 382 LDIRGCRNLRELPTGIGKLKNMRSLLNGLTCSLKYMPI--GISKLTSLRTLDKFAVGGGVDGG-----STCRLECLKNFQ 454 (677)
Q Consensus 382 L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~--~i~~l~~L~~L~l~~~~~~~~~~-----~~~~~~~L~~l~ 454 (677)
|++++|. +..+| .++.+++|++|++++|. +..+|. .+..+++|++|++.++....... .......+..++
T Consensus 98 L~L~~N~-l~~l~-~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~ 174 (198)
T 1ds9_A 98 LWISYNQ-IASLS-GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLP 174 (198)
T ss_dssp EEEEEEE-CCCHH-HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCS
T ss_pred EECcCCc-CCcCC-ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCC
Confidence 9999997 77787 58999999999999994 555543 68889999999998776532000 001112366777
Q ss_pred cCCccc
Q 038430 455 LIRKCG 460 (677)
Q Consensus 455 ~L~~L~ 460 (677)
+|+.|+
T Consensus 175 ~L~~Ld 180 (198)
T 1ds9_A 175 NLKKLD 180 (198)
T ss_dssp SCSEEC
T ss_pred CcEEEC
Confidence 777765
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.95 E-value=2.7e-09 Score=98.65 Aligned_cols=99 Identities=20% Similarity=0.339 Sum_probs=66.0
Q ss_pred EEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccC-CcccCCCCCcCEEEecCccccccchh-hccCCCcCEEE
Q 038430 306 RHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKI-PENVGKLMHLKYLNLSELHIERLPKT-LCELYNLQKLD 383 (677)
Q Consensus 306 ~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~l-p~~~~~l~~L~~L~Ls~~~i~~lp~~-i~~l~~L~~L~ 383 (677)
+.++++++.+..+|..+. ++|++|++++ +.+..+ |..++.+++|++|+|++|.++.+|+. +.++++|++|+
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~-----N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~ 87 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNN-----NQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLD 87 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCS-----SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCC-----CCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEE
Confidence 356667777777775443 6777777774 333444 44567777777777777777777665 46777777777
Q ss_pred ecCCCCccccCcc-cccccccceeecCccC
Q 038430 384 IRGCRNLRELPTG-IGKLKNMRSLLNGLTC 412 (677)
Q Consensus 384 L~~~~~l~~lp~~-i~~l~~L~~L~l~~~~ 412 (677)
|++|. +..+|.. +..+++|++|++++|.
T Consensus 88 L~~N~-l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 88 LNDNH-LKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp CCSSC-CCCCCTTTTTTCTTCSEEECCSSC
T ss_pred CCCCc-cceeCHHHhccccCCCEEEeCCCC
Confidence 77776 6666654 6677777777777773
No 140
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.88 E-value=5.4e-09 Score=96.94 Aligned_cols=108 Identities=21% Similarity=0.360 Sum_probs=91.7
Q ss_pred CCCceEEEEEEecCCCcccc-cccCCCcccEEEeCCCCCCCCCCccCCcc-cCCCCCcCEEEecCccccccchh-hccCC
Q 038430 301 FGGKVRHLGLKFKGGASFPM-SIHGLNRLRTLLIDDESPPNSSLDKIPEN-VGKLMHLKYLNLSELHIERLPKT-LCELY 377 (677)
Q Consensus 301 ~~~~l~~L~l~~~~~~~~p~-~~~~l~~L~~L~l~~~~l~~~~~~~lp~~-~~~l~~L~~L~Ls~~~i~~lp~~-i~~l~ 377 (677)
.+..++.|++.++.+..+|. .+..+++|++|++++ +.+..+|.. ++.+++|++|++++|.++.+|+. +..++
T Consensus 26 ~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-----n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~ 100 (177)
T 2o6r_A 26 IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQ-----NQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLT 100 (177)
T ss_dssp CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCS-----SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCC-----CcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCc
Confidence 46789999999999988874 578899999999996 345566654 68999999999999999988775 78999
Q ss_pred CcCEEEecCCCCccccCcc-cccccccceeecCccCCC
Q 038430 378 NLQKLDIRGCRNLRELPTG-IGKLKNMRSLLNGLTCSL 414 (677)
Q Consensus 378 ~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~ 414 (677)
+|++|++++|. +..+|.. +..+++|++|++++|...
T Consensus 101 ~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 101 QLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp TCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCCee
Confidence 99999999998 7778775 578999999999999543
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.86 E-value=6.2e-09 Score=95.82 Aligned_cols=97 Identities=23% Similarity=0.349 Sum_probs=53.1
Q ss_pred EEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccC-CcccCCCCCcCEEEecCccccccchh-hccCCCcCEEEe
Q 038430 307 HLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKI-PENVGKLMHLKYLNLSELHIERLPKT-LCELYNLQKLDI 384 (677)
Q Consensus 307 ~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~l-p~~~~~l~~L~~L~Ls~~~i~~lp~~-i~~l~~L~~L~L 384 (677)
.++++++.+..+|..+. ++|++|++++ +.+..+ |..+..+++|++|+|++|.++.+|+. +.++++|++|+|
T Consensus 13 ~l~~s~n~l~~ip~~~~--~~l~~L~L~~-----N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 13 TVDCSGKSLASVPTGIP--TTTQVLYLYD-----NQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp EEECTTSCCSSCCSCCC--TTCSEEECCS-----SCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred EEEeCCCCcCccCccCC--CCCcEEEcCC-----CcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence 45555555555554332 5566666653 233333 34455566666666666666655543 455666666666
Q ss_pred cCCCCccccCc-ccccccccceeecCcc
Q 038430 385 RGCRNLRELPT-GIGKLKNMRSLLNGLT 411 (677)
Q Consensus 385 ~~~~~l~~lp~-~i~~l~~L~~L~l~~~ 411 (677)
++|. +..+|. .+..+++|++|++++|
T Consensus 86 ~~N~-l~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 86 NDNQ-LKSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp CSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCc-cCEeCHHHhcCCCCCCEEEeCCC
Confidence 6655 444444 3555666666666655
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.86 E-value=6.2e-09 Score=96.19 Aligned_cols=102 Identities=26% Similarity=0.348 Sum_probs=85.5
Q ss_pred ccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCcccccc-chhhccCCCcCEEEecCCCCccccCcc-cccccccce
Q 038430 328 LRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERL-PKTLCELYNLQKLDIRGCRNLRELPTG-IGKLKNMRS 405 (677)
Q Consensus 328 L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~ 405 (677)
-+.++++ ++.+..+|..+. .+|++|+|++|.++.+ |..+.++++|++|+|++|. +..+|.. +..+++|++
T Consensus 14 ~~~l~~~-----~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~ 85 (174)
T 2r9u_A 14 QTLVNCQ-----NIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQ 85 (174)
T ss_dssp SSEEECC-----SSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred CcEEEeC-----CCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhE
Confidence 3678887 456778888765 8999999999999977 5569999999999999998 8888875 589999999
Q ss_pred eecCccCCCcccCCc-CCCCCCCCccCceeeCCC
Q 038430 406 LLNGLTCSLKYMPIG-ISKLTSLRTLDKFAVGGG 438 (677)
Q Consensus 406 L~l~~~~~~~~~p~~-i~~l~~L~~L~l~~~~~~ 438 (677)
|++++| .+..+|.. ++.+++|+.|++.++...
T Consensus 86 L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 86 LDLNDN-HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp EECCSS-CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred EECCCC-ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 999999 46677765 889999999998877654
No 143
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.82 E-value=8.2e-09 Score=106.18 Aligned_cols=260 Identities=13% Similarity=0.029 Sum_probs=155.1
Q ss_pred CCceEEEEEEecCCCcccccccCCCcccEEEeCCCCCCCCCCccCCcc-cCC--------CCCcCEEEecCccccccch-
Q 038430 302 GGKVRHLGLKFKGGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIPEN-VGK--------LMHLKYLNLSELHIERLPK- 371 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~-~~~--------l~~L~~L~Ls~~~i~~lp~- 371 (677)
..+++.|++++|.+..+...-..++.++.+.+..+ .+|+. |.+ +.+|+.|+|.. .++.++.
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~--------~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~ 118 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN--------FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDA 118 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT--------EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTT
T ss_pred hccCeEEecCcceeEEecCcccccccccccccccc--------ccCHHHhcccccccccccCCCcEEECCc-cccchhHH
Confidence 56799999999988733222222333455555532 33322 455 89999999999 8888866
Q ss_pred hhccCCCcCEEEecCCCCccccCc-ccccccccceeecCccC---CCccc-CCcCCCCCCCC-ccCceeeCCCcCCCCcc
Q 038430 372 TLCELYNLQKLDIRGCRNLRELPT-GIGKLKNMRSLLNGLTC---SLKYM-PIGISKLTSLR-TLDKFAVGGGVDGGSTC 445 (677)
Q Consensus 372 ~i~~l~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~l~~~~---~~~~~-p~~i~~l~~L~-~L~l~~~~~~~~~~~~~ 445 (677)
.|.++++|+.|++.+|. +..++. .+..+.++..+...... ....+ +..+.++..|+ .+.+...+... ..
T Consensus 119 aF~~~~~L~~l~l~~n~-i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~----~~ 193 (329)
T 3sb4_A 119 AFKGCDNLKICQIRKKT-APNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLE----DE 193 (329)
T ss_dssp TTTTCTTCCEEEBCCSS-CCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHH----HH
T ss_pred HhhcCcccceEEcCCCC-ccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHH----HH
Confidence 48999999999999988 555554 57777777776665421 01111 11233334443 11111100000 00
Q ss_pred cccccccCCcCCcccccCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCccccc
Q 038430 446 RLECLKNFQLIRKCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEK 525 (677)
Q Consensus 446 ~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (677)
....--...++..+.+.+. +. ..........+++|+.|++..+....
T Consensus 194 ~~~~~~~~~~~~~l~~~~~--l~--~~~~~~l~~~~~~L~~l~L~~n~i~~----------------------------- 240 (329)
T 3sb4_A 194 IMKAGLQPRDINFLTIEGK--LD--NADFKLIRDYMPNLVSLDISKTNATT----------------------------- 240 (329)
T ss_dssp HHHTTCCGGGCSEEEEEEC--CC--HHHHHHHHHHCTTCCEEECTTBCCCE-----------------------------
T ss_pred HhhcccCccccceEEEeee--ec--HHHHHHHHHhcCCCeEEECCCCCcce-----------------------------
Confidence 0001111233344444331 11 11111112347899999998652111
Q ss_pred CCccccchhhhhhcchhhHHHHhhhcCCCCCCcEEEEecCCCCCCChh-HhhccCCC-eEEEeCCCCCCcCCC--CCCcc
Q 038430 526 GGKVVDGEYEERRRKNEKDEQLLEALQPPLNVEKLWILFNGGNILPKW-LTSLTNLS-DLKLVFCENCEQLPP--LGKLP 601 (677)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~-~~~l~~L~-~L~l~~c~~~~~l~~--l~~l~ 601 (677)
.....+..+++|+++++..+ +..++.. +..+++|+ .|.+.+ .++.++. +.+++
T Consensus 241 --------------------I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~ 297 (329)
T 3sb4_A 241 --------------------IPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCD 297 (329)
T ss_dssp --------------------ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCT
T ss_pred --------------------ecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCc
Confidence 01134677889999999887 6666654 66999999 999987 6666664 88899
Q ss_pred -cceeeccccccceEeCCccccCCCCCCCCCCCCCCCcccCCCccceeee
Q 038430 602 -LEKLELCHLKSVKRVGNEFLEIEESEDDPSSSSSSSSVTAFPKVKSLEI 650 (677)
Q Consensus 602 -L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 650 (677)
|+.|++.+ ++++.|+...+ ..+++|+.+..
T Consensus 298 ~L~~l~l~~-n~i~~I~~~aF------------------~~~~~L~~ly~ 328 (329)
T 3sb4_A 298 NLRYVLATG-DKITTLGDELF------------------GNGVPSKLIYK 328 (329)
T ss_dssp TEEEEEECS-SCCCEECTTTT------------------CTTCCCCEEEC
T ss_pred cCCEEEeCC-CccCccchhhh------------------cCCcchhhhcc
Confidence 99999975 77999987655 56788888763
No 144
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.81 E-value=1.3e-08 Score=93.74 Aligned_cols=103 Identities=25% Similarity=0.312 Sum_probs=85.4
Q ss_pred cccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCcccccc-chhhccCCCcCEEEecCCCCccccCcc-cccccccc
Q 038430 327 RLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERL-PKTLCELYNLQKLDIRGCRNLRELPTG-IGKLKNMR 404 (677)
Q Consensus 327 ~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~-i~~l~~L~ 404 (677)
..+.++++ ++.+..+|..+. .+|++|+|++|.|+.+ |..+.++++|++|+|++|. +..+|.. +..+++|+
T Consensus 10 ~~~~l~~s-----~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~ 81 (170)
T 3g39_A 10 SGTTVDCS-----GKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLT 81 (170)
T ss_dssp ETTEEECT-----TSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCC
T ss_pred CCCEEEeC-----CCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCC
Confidence 35788888 456777887664 8999999999999987 5569999999999999998 7777765 68999999
Q ss_pred eeecCccCCCcccCC-cCCCCCCCCccCceeeCCC
Q 038430 405 SLLNGLTCSLKYMPI-GISKLTSLRTLDKFAVGGG 438 (677)
Q Consensus 405 ~L~l~~~~~~~~~p~-~i~~l~~L~~L~l~~~~~~ 438 (677)
+|++++|. +..+|. .+..+++|++|++.++...
T Consensus 82 ~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 82 QLSLNDNQ-LKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp EEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred EEECCCCc-cCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 99999994 666665 4889999999998877653
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.55 E-value=9.6e-08 Score=98.90 Aligned_cols=99 Identities=15% Similarity=0.145 Sum_probs=64.2
Q ss_pred EEEEec-CCCcccccccCCCcccEEEeCCCCCCCCCCccCC-cccCCCCCcCEEEecCccccccch-hhccCCCcCEEEe
Q 038430 308 LGLKFK-GGASFPMSIHGLNRLRTLLIDDESPPNSSLDKIP-ENVGKLMHLKYLNLSELHIERLPK-TLCELYNLQKLDI 384 (677)
Q Consensus 308 L~l~~~-~~~~~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp-~~~~~l~~L~~L~Ls~~~i~~lp~-~i~~l~~L~~L~L 384 (677)
+++.++ .+..+|. +..+++|+.|+|++ ++.+..+| ..|+.+.+|++|+|++|.|+.+|+ .|.+|++|+.|+|
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~----~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIEN----QQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCS----CSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccC----CCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence 455555 6666776 77777777777763 24555555 346777777777777777775544 4677777777777
Q ss_pred cCCCCccccCcccccccccceeecCccC
Q 038430 385 RGCRNLRELPTGIGKLKNMRSLLNGLTC 412 (677)
Q Consensus 385 ~~~~~l~~lp~~i~~l~~L~~L~l~~~~ 412 (677)
++|. +..+|..+.....|+.|++.+|.
T Consensus 88 ~~N~-l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 88 SFNA-LESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp CSSC-CSCCCSTTTCSCCCCEEECCSSC
T ss_pred CCCc-cceeCHHHcccCCceEEEeeCCC
Confidence 7776 66666544333337777777763
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.53 E-value=2e-07 Score=96.51 Aligned_cols=103 Identities=18% Similarity=0.135 Sum_probs=82.3
Q ss_pred EEEeCCCCCCCCCCccCCcccCCCCCcCEEEecC-ccccccch-hhccCCCcCEEEecCCCCccccC-ccccccccccee
Q 038430 330 TLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSE-LHIERLPK-TLCELYNLQKLDIRGCRNLRELP-TGIGKLKNMRSL 406 (677)
Q Consensus 330 ~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~-~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L 406 (677)
.++.++ .+.+..+|. ++.+.+|++|+|++ |.++.+|+ .|++|++|++|+|++|. +..+| ..+++|++|++|
T Consensus 12 ~v~~~~----~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L 85 (347)
T 2ifg_A 12 GLRCTR----DGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRL 85 (347)
T ss_dssp CEECCS----SCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEE
T ss_pred EEEcCC----CCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEE
Confidence 346653 336788999 99999999999996 99998874 69999999999999998 66555 468999999999
Q ss_pred ecCccCCCcccCCcCCCCCCCCccCceeeCCCc
Q 038430 407 LNGLTCSLKYMPIGISKLTSLRTLDKFAVGGGV 439 (677)
Q Consensus 407 ~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~ 439 (677)
+|++| .+..+|..+.....|+.|++.++....
T Consensus 86 ~l~~N-~l~~~~~~~~~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 86 NLSFN-ALESLSWKTVQGLSLQELVLSGNPLHC 117 (347)
T ss_dssp ECCSS-CCSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred eCCCC-ccceeCHHHcccCCceEEEeeCCCccC
Confidence 99999 566777664443349999988877654
No 147
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.48 E-value=1.4e-06 Score=91.74 Aligned_cols=102 Identities=18% Similarity=0.287 Sum_probs=58.4
Q ss_pred ccccCCCcccEEEeCCCCCCCCCCccCCcc-cCCCCCcCEEEecCccccccc-hhhccCCCcCEEEecCCCCccccCccc
Q 038430 320 MSIHGLNRLRTLLIDDESPPNSSLDKIPEN-VGKLMHLKYLNLSELHIERLP-KTLCELYNLQKLDIRGCRNLRELPTGI 397 (677)
Q Consensus 320 ~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~-~~~l~~L~~L~Ls~~~i~~lp-~~i~~l~~L~~L~L~~~~~l~~lp~~i 397 (677)
.+|.++ +|+.+.+.. .+..++.. |.+ .+|+.+.+.. .++.++ ..|.++.+|+.+++.+|. +..+|...
T Consensus 130 ~aF~~~-~L~~i~l~~------~i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~-l~~I~~~a 199 (401)
T 4fdw_A 130 DAFRNS-QIAKVVLNE------GLKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTK-ITKLPAST 199 (401)
T ss_dssp TTTTTC-CCSEEECCT------TCCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSC-CSEECTTT
T ss_pred hhcccC-CccEEEeCC------CccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCc-ceEechhh
Confidence 345554 577776643 24444433 344 3577777764 455554 346677777777777665 66666654
Q ss_pred ccccccceeecCccCCCcccC-CcCCCCCCCCccCce
Q 038430 398 GKLKNMRSLLNGLTCSLKYMP-IGISKLTSLRTLDKF 433 (677)
Q Consensus 398 ~~l~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~l~ 433 (677)
-...+|+.+.+..+ +..++ ..+.++.+|+.+.+.
T Consensus 200 F~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~ 234 (401)
T 4fdw_A 200 FVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIP 234 (401)
T ss_dssp TTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECC
T ss_pred EeecccCEEEeCCc--hheehhhHhhCCCCCCEEecC
Confidence 44567777777643 44444 335666666666543
No 148
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.32 E-value=1.7e-06 Score=91.02 Aligned_cols=234 Identities=12% Similarity=0.070 Sum_probs=147.5
Q ss_pred ceEEEEEEecCCCccc-ccccCCCcccEEEeCCCCCCCCCCccCC-cccCCCCCcCEEEecCccccccchhhccCCCcCE
Q 038430 304 KVRHLGLKFKGGASFP-MSIHGLNRLRTLLIDDESPPNSSLDKIP-ENVGKLMHLKYLNLSELHIERLPKTLCELYNLQK 381 (677)
Q Consensus 304 ~l~~L~l~~~~~~~~p-~~~~~l~~L~~L~l~~~~l~~~~~~~lp-~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~ 381 (677)
+++.+.+..+ +..++ .+|.++ +|+.+.+.. .+..++ ..|.++.+|+.+++..|.++.+|...-...+|+.
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~------~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~ 207 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS------TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEE 207 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT------TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSE
T ss_pred CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC------CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCE
Confidence 5666666544 55555 466664 699998863 455565 4478999999999999999988876444689999
Q ss_pred EEecCCCCccccCc-ccccccccceeecCccCCCcccCCc-CCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcc
Q 038430 382 LDIRGCRNLRELPT-GIGKLKNMRSLLNGLTCSLKYMPIG-ISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKC 459 (677)
Q Consensus 382 L~L~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L 459 (677)
+.+..+ +..++. .+.++++|+.+.+..+ +..++.. +.+ .+|+.+.+.+ ... .-....+.++.+|+.+
T Consensus 208 l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp~-~i~-----~I~~~aF~~c~~L~~l 276 (401)
T 4fdw_A 208 VLLPVT--LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLPN-GVT-----NIASRAFYYCPELAEV 276 (401)
T ss_dssp EECCTT--CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEET-TCC-----EECTTTTTTCTTCCEE
T ss_pred EEeCCc--hheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeCC-Ccc-----EEChhHhhCCCCCCEE
Confidence 999853 677765 5888999999999875 4555544 555 6788777632 111 2234456667777777
Q ss_pred cccCccCC-CChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCCCCCCcccccCCccccchhhhhh
Q 038430 460 GIEGLSNV-SHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDEDEDGGYKEEKGGKVVDGEYEERR 538 (677)
Q Consensus 460 ~i~~~~~~-~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (677)
.+.+.... ..........+.+|++|+.+.+..+ ...
T Consensus 277 ~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i~~------------------------------------------ 313 (401)
T 4fdw_A 277 TTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-IRI------------------------------------------ 313 (401)
T ss_dssp EEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-CCE------------------------------------------
T ss_pred EeCCccccCCcccEECHHHhhCCccCCeEEeCCc-eEE------------------------------------------
Confidence 66542110 0011122345677788888777522 000
Q ss_pred cchhhHHHHhhhcCCCCCCcEEEEecCCCCCCCh-hHhhccCCCeEEEeCCCCCCcCCC--CCCcc--cceeeccc
Q 038430 539 RKNEKDEQLLEALQPPLNVEKLWILFNGGNILPK-WLTSLTNLSDLKLVFCENCEQLPP--LGKLP--LEKLELCH 609 (677)
Q Consensus 539 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~c~~~~~l~~--l~~l~--L~~L~l~~ 609 (677)
.....+..+++|+.+.|..+ +..++. .+..+ +|+.|++.++ ....++. +..+| ++.|.+-.
T Consensus 314 -------I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 314 -------LGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVPA 379 (401)
T ss_dssp -------ECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEECG
T ss_pred -------EhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCC-CCcccccccccCCCCCccEEEeCH
Confidence 01134566788888888554 444433 35567 8999999887 3333332 44554 66666653
No 149
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.25 E-value=2.9e-05 Score=82.16 Aligned_cols=235 Identities=8% Similarity=-0.029 Sum_probs=135.5
Q ss_pred eEEecCCCCHHHHHHHHHHHhcCCCCC-CchHHHHHHHHHHHcC--CccEEEEEECCcCCC------ccchhhhhhhhcC
Q 038430 2 WVCVSDTFEEISVANAIIEGLGESTSS-LSEFQSLMSHIHRSIE--GKKNFLILNDVWDGD------YNKWAPFFLCLNH 72 (677)
Q Consensus 2 WV~vs~~~~~~~i~~~i~~~l~~~~~~-~~~~~~~~~~i~~~L~--~kr~LlVlDdvw~~~------~~~~~~l~~~~~~ 72 (677)
||++....+...++++++++++..... ..+.......+.+.+. +++++||+||+|... ...+..+...+..
T Consensus 91 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~ 170 (412)
T 1w5s_A 91 YVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEE 170 (412)
T ss_dssp EEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHh
Confidence 556557788999999999999765332 2344556666666665 679999999997632 1223333333322
Q ss_pred C---C--CCcEEEEEcCchHHHHhcC---------CCCeEecCCCChHHHHHHHHHHh---hcCCCCCCCcchhHHHHHH
Q 038430 73 G---L--HGSKILVTTRNELVARMMG---------STNIIFIEQLTEEECWSLFKRLA---FFGCSFEDCERLEPIGQKI 135 (677)
Q Consensus 73 ~---~--~gS~IiiTTR~~~v~~~~~---------~~~~~~v~~L~~~ea~~LF~~~a---f~~~~~~~~~~~~~~~~~i 135 (677)
. + ....||+|||...+...+. ....+++++++.++++++|...+ +.... --.+....+
T Consensus 171 ~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~-----~~~~~~~~i 245 (412)
T 1w5s_A 171 IPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTV-----WEPRHLELI 245 (412)
T ss_dssp SCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTS-----CCHHHHHHH
T ss_pred cccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCC-----CChHHHHHH
Confidence 1 2 3445888888665432211 12239999999999999997653 32111 123567788
Q ss_pred HHHhc------CCchHHHHHHHHh-c-----cC--CCHHHHHHHHhhhhhhhhhcCCCccceeecccccCCCchhhhHHH
Q 038430 136 ARKCK------GLPIAAKVIGNLL-R-----SK--STIKDWQRILDSEMWKAEEIGKGLLTPLLLSYNDLSSNSMVKRFF 201 (677)
Q Consensus 136 ~~~c~------GlPLal~~ig~~L-~-----~~--~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~Sy~~L~~~~~~k~~f 201 (677)
++.|+ |.|..+..+.... . +. -+...+..++.... . ...+.-+++.|+. ..+.++
T Consensus 246 ~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~-------~--~~~~~~~l~~l~~--~~~~~l 314 (412)
T 1w5s_A 246 SDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENE-------A--ASIQTHELEALSI--HELIIL 314 (412)
T ss_dssp HHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC---------------CCSSSSSCH--HHHHHH
T ss_pred HHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh-------c--cchHHHHHHcCCH--HHHHHH
Confidence 88898 9997665544321 1 11 12344444433210 0 2334556778888 778888
Q ss_pred hhhccCC--CCceecHHHHHHHHH--H---cCCcCcchhhhHHHhHHHHHHHHHHccCccccc
Q 038430 202 SYCAVFP--KDYNMYKEELISLWM--A---QGYLNAEEYEEKEMTGEECFNILAARSFFQEFE 257 (677)
Q Consensus 202 l~~a~fp--~~~~i~~~~li~~wi--~---~g~i~~~~~~~~~~~~~~~~~~L~~~sll~~~~ 257 (677)
..++.+. .+..+...++...+. + .|. ... .......+++.|.+.+++....
T Consensus 315 ~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~l~~L~~~gli~~~~ 372 (412)
T 1w5s_A 315 RLIAEATLGGMEWINAGLLRQRYEDASLTMYNV-KPR----GYTQYHIYLKHLTSLGLVDAKP 372 (412)
T ss_dssp HHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSCC-CCC----CHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHhcCCCCccHHHHHHHHHHHHHhhcCC-CCC----CHHHHHHHHHHHHhCCCEEeec
Confidence 8777643 223344544444332 1 121 110 1123456789999999997654
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.22 E-value=1.2e-07 Score=98.80 Aligned_cols=35 Identities=20% Similarity=0.226 Sum_probs=15.1
Q ss_pred CCcCEEEecCccccc--cchhhccCCCcCEEEecCCC
Q 038430 354 MHLKYLNLSELHIER--LPKTLCELYNLQKLDIRGCR 388 (677)
Q Consensus 354 ~~L~~L~Ls~~~i~~--lp~~i~~l~~L~~L~L~~~~ 388 (677)
.+|+.|+|++|.++. +..-...+.+|+.|+|++|.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~ 137 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS 137 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC
Confidence 455555555555441 11112223345555555554
No 151
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.15 E-value=8e-08 Score=100.19 Aligned_cols=132 Identities=15% Similarity=0.139 Sum_probs=88.7
Q ss_pred CCceEEEEEEecCCCcc-----ccccc-CCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCcccccc-----c
Q 038430 302 GGKVRHLGLKFKGGASF-----PMSIH-GLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERL-----P 370 (677)
Q Consensus 302 ~~~l~~L~l~~~~~~~~-----p~~~~-~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~l-----p 370 (677)
...++.|++++|.+... ...+. ..++|+.|++++|.+.......+ ...+.+|++|+|++|.++.. .
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l---~~~L~~L~~L~Ls~n~l~~~~~~~L~ 147 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTL---LPVFLRARKLGLQLNSLGPEACKDLR 147 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHT---HHHHHTEEEEECCSSCCCHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHH---HHHHHhccHhhcCCCCCCHHHHHHHH
Confidence 56788999999988542 22233 33799999999743221111111 23456899999999998732 2
Q ss_pred hhh-ccCCCcCEEEecCCCCccc-----cCcccccccccceeecCccCCCcc-----cCCcCCCCCCCCccCceeeCCC
Q 038430 371 KTL-CELYNLQKLDIRGCRNLRE-----LPTGIGKLKNMRSLLNGLTCSLKY-----MPIGISKLTSLRTLDKFAVGGG 438 (677)
Q Consensus 371 ~~i-~~l~~L~~L~L~~~~~l~~-----lp~~i~~l~~L~~L~l~~~~~~~~-----~p~~i~~l~~L~~L~l~~~~~~ 438 (677)
..+ ...++|++|+|++|. +.. ++..+..+++|++|++++|. ++. ++..+...++|++|++.+|...
T Consensus 148 ~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 148 DLLLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNGAG 224 (372)
T ss_dssp HHHHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred HHHHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence 222 356889999999998 543 55556788999999999995 332 2344556667777777766543
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.02 E-value=3.2e-06 Score=87.38 Aligned_cols=83 Identities=25% Similarity=0.262 Sum_probs=43.6
Q ss_pred CcccEEEeCCCCCCCCC----CccCCcccCCCCCcCEEEecCcccc----------ccchhhccCCCcCEEEecCCCCcc
Q 038430 326 NRLRTLLIDDESPPNSS----LDKIPENVGKLMHLKYLNLSELHIE----------RLPKTLCELYNLQKLDIRGCRNLR 391 (677)
Q Consensus 326 ~~L~~L~l~~~~l~~~~----~~~lp~~~~~l~~L~~L~Ls~~~i~----------~lp~~i~~l~~L~~L~L~~~~~l~ 391 (677)
..++.|.+..+.+.+.. +..+.+++..+++|+.|.+...... .++..+..+++|+.|+|++|..+
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l- 185 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL- 185 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-
Confidence 45778888753211100 0112333455677888877543221 24444566677777777766322
Q ss_pred ccCcccccccccceeecCcc
Q 038430 392 ELPTGIGKLKNMRSLLNGLT 411 (677)
Q Consensus 392 ~lp~~i~~l~~L~~L~l~~~ 411 (677)
.+|. +. +++|++|++..|
T Consensus 186 ~l~~-~~-~~~L~~L~L~~~ 203 (362)
T 2ra8_A 186 SIGK-KP-RPNLKSLEIISG 203 (362)
T ss_dssp BCCS-CB-CTTCSEEEEECS
T ss_pred eecc-cc-CCCCcEEEEecC
Confidence 3333 32 566666666655
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.91 E-value=2.8e-06 Score=87.75 Aligned_cols=167 Identities=10% Similarity=0.040 Sum_probs=86.9
Q ss_pred cccCCCcccEEEeCCCCCCCCCC-----ccCCcccCCCCCcCEEEecCccccccchhhccCCCcCEEEecCCCCccccCc
Q 038430 321 SIHGLNRLRTLLIDDESPPNSSL-----DKIPENVGKLMHLKYLNLSELHIERLPKTLCELYNLQKLDIRGCRNLRELPT 395 (677)
Q Consensus 321 ~~~~l~~L~~L~l~~~~l~~~~~-----~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~ 395 (677)
+...+++|+.|.+.+.......+ ..++..+..+++|+.|+|+++.-..+|+ +. +++|++|+|..|........
T Consensus 134 s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~~-~~~L~~L~L~~~~l~~~~l~ 211 (362)
T 2ra8_A 134 NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-KP-RPNLKSLEIISGGLPDSVVE 211 (362)
T ss_dssp THHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-CB-CTTCSEEEEECSBCCHHHHH
T ss_pred hhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-cc-CCCCcEEEEecCCCChHHHH
Confidence 44556778888776421111001 1233334567788888887764223443 33 77888888877652221112
Q ss_pred ccc--cccccceeecCccCC-------CcccCCcC--CCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccccCc
Q 038430 396 GIG--KLKNMRSLLNGLTCS-------LKYMPIGI--SKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIEGL 464 (677)
Q Consensus 396 ~i~--~l~~L~~L~l~~~~~-------~~~~p~~i--~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~ 464 (677)
.+. .+++|++|+++.+.. +..+...+ ..+++|+.|++.++...... ...+.....+++|+.|+++..
T Consensus 212 ~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~--~~~la~a~~~~~L~~LdLs~n 289 (362)
T 2ra8_A 212 DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVV--VEMFLESDILPQLETMDISAG 289 (362)
T ss_dssp HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHH--HHHHHHCSSGGGCSEEECCSS
T ss_pred HHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHH--HHHHHhCccCCCCCEEECCCC
Confidence 232 677888887753110 11111112 24677888887766543200 011222235677888888652
Q ss_pred cCCCCh-hHHHHhhccCCcccCceEEEee
Q 038430 465 SNVSHL-DEAERLELKNMENLLHLYLWFE 492 (677)
Q Consensus 465 ~~~~~~-~~~~~~~l~~~~~L~~L~l~~~ 492 (677)
. +... .......+..+++|+.|+++.|
T Consensus 290 ~-L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 290 V-LTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp C-CBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred C-CChHHHHHHHhhcccCCcceEEECCCC
Confidence 1 1111 1123334456788888888877
No 154
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.90 E-value=0.00019 Score=75.40 Aligned_cols=293 Identities=13% Similarity=0.125 Sum_probs=156.2
Q ss_pred CceEEEEEEecCCCccc-ccccCCCcccEEEeCCCCCCCCCCccCCc-ccCCCCCcCEEEecCc------------c---
Q 038430 303 GKVRHLGLKFKGGASFP-MSIHGLNRLRTLLIDDESPPNSSLDKIPE-NVGKLMHLKYLNLSEL------------H--- 365 (677)
Q Consensus 303 ~~l~~L~l~~~~~~~~p-~~~~~l~~L~~L~l~~~~l~~~~~~~lp~-~~~~l~~L~~L~Ls~~------------~--- 365 (677)
.+++.+.+. +.+..++ .+|.+|++|+.+.+..+ +..++. .+.++..|+.+.+..+ .
T Consensus 71 ~~L~~i~lp-~~i~~I~~~aF~~c~~L~~i~lp~~------l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~ 143 (394)
T 4fs7_A 71 RKVTEIKIP-STVREIGEFAFENCSKLEIINIPDS------VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKE 143 (394)
T ss_dssp TTEEEEECC-TTCCEECTTTTTTCTTCCEECCCTT------CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSE
T ss_pred CCceEEEeC-CCccCcchhHhhCCCCCcEEEeCCC------ceEccchhhcccccchhhcccCceeeecceeeecccccc
Confidence 468888886 3455664 67888999999988642 223322 2344444443333211 1
Q ss_pred ------cccc-chhhccCCCcCEEEecCCCCccccCc-ccccccccceeecCccCCCcccC-CcCCCCCCCCccCceeeC
Q 038430 366 ------IERL-PKTLCELYNLQKLDIRGCRNLRELPT-GIGKLKNMRSLLNGLTCSLKYMP-IGISKLTSLRTLDKFAVG 436 (677)
Q Consensus 366 ------i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~l~~~~ 436 (677)
+..+ ...|.++.+|+.+.+.++ +..++. .+..+.+|+.+.+..+ +..++ ..+.++..|+.+.+....
T Consensus 144 ~~~~~~~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~~ 219 (394)
T 4fs7_A 144 ITIPEGVTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNSL 219 (394)
T ss_dssp EECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTTC
T ss_pred cccCccccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCCc
Confidence 1112 234778899999999754 445554 5778899999998766 34444 446777788877654322
Q ss_pred CCcCCCCcccccccccCCcCCcccccCccCCCChhHHHHhhccCCcccCceEEEeecCCCCCcccccccccccCCCCCCC
Q 038430 437 GGVDGGSTCRLECLKNFQLIRKCGIEGLSNVSHLDEAERLELKNMENLLHLYLWFEVVDREDEDWEDEEENEDEGGEDED 516 (677)
Q Consensus 437 ~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (677)
... -........|+.+.+... +. ......+.++..|+.+.+..+.. . .+...-.
T Consensus 220 ~~i-------~~~~~~~~~l~~i~ip~~--~~---~i~~~~f~~~~~l~~~~~~~~~~-~-------------i~~~~F~ 273 (394)
T 4fs7_A 220 YYL-------GDFALSKTGVKNIIIPDS--FT---ELGKSVFYGCTDLESISIQNNKL-R-------------IGGSLFY 273 (394)
T ss_dssp CEE-------CTTTTTTCCCCEEEECTT--CC---EECSSTTTTCSSCCEEEECCTTC-E-------------ECSCTTT
T ss_pred eEe-------ehhhcccCCCceEEECCC--ce---ecccccccccccceeEEcCCCcc-e-------------eeccccc
Confidence 110 001111223444333210 01 11112345566677666643300 0 0000000
Q ss_pred CCCCcccccCCccccchhhhhhcchhhHHHHhhhcCCCCCCcEEEEecCCCCCCChh-HhhccCCCeEEEeCCCCCCcCC
Q 038430 517 EDGGYKEEKGGKVVDGEYEERRRKNEKDEQLLEALQPPLNVEKLWILFNGGNILPKW-LTSLTNLSDLKLVFCENCEQLP 595 (677)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~c~~~~~l~ 595 (677)
............. ...-..+..+.+|+.+.+..+ +..++.. +..+.+|+.++|.+ .++.++
T Consensus 274 ~~~~l~~~~~~~~---------------~i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~--~v~~I~ 335 (394)
T 4fs7_A 274 NCSGLKKVIYGSV---------------IVPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY--LVEEIG 335 (394)
T ss_dssp TCTTCCEEEECSS---------------EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT--TCCEEC
T ss_pred cccccceeccCce---------------eeccccccccccccccccccc-cceechhhhcCCCCCCEEEeCC--cccEEh
Confidence 0000000000000 000123455678888888654 3445433 55788999999964 355555
Q ss_pred C--CCCcc-cceeeccccccceEeCCccccCCCCCCCCCCCCCCCcccCCCccceeeecccccCccccccCCccccCCCc
Q 038430 596 P--LGKLP-LEKLELCHLKSVKRVGNEFLEIEESEDDPSSSSSSSSVTAFPKVKSLEIKELEEGNYRITRKENISIIPRL 672 (677)
Q Consensus 596 ~--l~~l~-L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L 672 (677)
. +.+.. |+.+.+.. +++.|+...+ ..+++|+++.+...- +.+. ..+..+++|
T Consensus 336 ~~aF~~c~~L~~i~lp~--~l~~I~~~aF------------------~~C~~L~~i~lp~~~-~~~~----~~F~~c~~L 390 (394)
T 4fs7_A 336 KRSFRGCTSLSNINFPL--SLRKIGANAF------------------QGCINLKKVELPKRL-EQYR----YDFEDTTKF 390 (394)
T ss_dssp TTTTTTCTTCCEECCCT--TCCEECTTTB------------------TTCTTCCEEEEEGGG-GGGG----GGBCTTCEE
T ss_pred HHhccCCCCCCEEEECc--cccEehHHHh------------------hCCCCCCEEEECCCC-EEhh----heecCCCCC
Confidence 3 67778 99998863 4888876654 568899999885432 2221 123357777
Q ss_pred ccc
Q 038430 673 SSL 675 (677)
Q Consensus 673 ~~L 675 (677)
+.+
T Consensus 391 ~~I 393 (394)
T 4fs7_A 391 KWI 393 (394)
T ss_dssp EEE
T ss_pred cEE
Confidence 754
No 155
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.87 E-value=1.5e-06 Score=79.03 Aligned_cols=101 Identities=17% Similarity=0.194 Sum_probs=71.4
Q ss_pred CCCcEEEEecCCCCCC-ChhHhhccCCCeEEEeCCCCCCc--CCCCCCc----c-cceeeccccccceEeCCccccCCCC
Q 038430 555 LNVEKLWILFNGGNIL-PKWLTSLTNLSDLKLVFCENCEQ--LPPLGKL----P-LEKLELCHLKSVKRVGNEFLEIEES 626 (677)
Q Consensus 555 ~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~c~~~~~--l~~l~~l----~-L~~L~l~~~~~l~~i~~~~~~~~~~ 626 (677)
..|++|+++++.+... -..+..+++|++|+|++|..+++ +..+..+ + |+.|+|++|++++.-+-...
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L----- 135 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL----- 135 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG-----
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH-----
Confidence 4799999999985421 12356899999999999987754 3334453 6 99999999999887655443
Q ss_pred CCCCCCCCCCCcccCCCccceeeeccccc-CccccccCCccccCCCcc
Q 038430 627 EDDPSSSSSSSSVTAFPKVKSLEIKELEE-GNYRITRKENISIIPRLS 673 (677)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~p~L~ 673 (677)
..+++|++|++++|+. .........-...+|+++
T Consensus 136 -------------~~~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~ 170 (176)
T 3e4g_A 136 -------------HHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLE 170 (176)
T ss_dssp -------------GGCTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCE
T ss_pred -------------hcCCCCCEEECCCCCCCCchHHHHHHHHHHCCCcE
Confidence 5689999999999997 543211001112677765
No 156
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.71 E-value=0.00025 Score=74.38 Aligned_cols=103 Identities=12% Similarity=0.200 Sum_probs=65.5
Q ss_pred ccccCCCcccEEEeCCCCCCCCCCccCCc-ccCCCCCcCEEEecCccccccch-hhccCCCcCEEEecCCCCccccC---
Q 038430 320 MSIHGLNRLRTLLIDDESPPNSSLDKIPE-NVGKLMHLKYLNLSELHIERLPK-TLCELYNLQKLDIRGCRNLRELP--- 394 (677)
Q Consensus 320 ~~~~~l~~L~~L~l~~~~l~~~~~~~lp~-~~~~l~~L~~L~Ls~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp--- 394 (677)
.+|.+|.+|+.+.+.. .+..+++ .|.++.+|+.+++..+ ++.++. .+.++.+|+.+.+..+ +..+.
T Consensus 65 ~AF~~c~~L~~i~lp~------~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~--l~~i~~~a 135 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPS------TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM--LKSIGVEA 135 (394)
T ss_dssp TTTTTCTTEEEEECCT------TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT--CCEECTTT
T ss_pred HHhhCCCCceEEEeCC------CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc--eeeeccee
Confidence 5788999999999963 3566654 4788999999999754 665544 4777888877766532 22111
Q ss_pred --------------------cccccccccceeecCccCCCcccC-CcCCCCCCCCccCce
Q 038430 395 --------------------TGIGKLKNMRSLLNGLTCSLKYMP-IGISKLTSLRTLDKF 433 (677)
Q Consensus 395 --------------------~~i~~l~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~l~ 433 (677)
..+.++++|+.+.+..+ +..++ ..+..+.+|+.+.+.
T Consensus 136 F~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~ 193 (394)
T 4fs7_A 136 FKGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLP 193 (394)
T ss_dssp TTTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCC
T ss_pred eecccccccccCccccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcC
Confidence 13455666776666544 23333 335566666666553
No 157
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.69 E-value=0.00014 Score=74.79 Aligned_cols=216 Identities=13% Similarity=0.077 Sum_probs=119.0
Q ss_pred chHHHHHHHHHHHcCC-ccEEEEEECCcCCCc-------cchhhhhhhhcCCCCCcEEEEEcCchHHHHhc---------
Q 038430 30 SEFQSLMSHIHRSIEG-KKNFLILNDVWDGDY-------NKWAPFFLCLNHGLHGSKILVTTRNELVARMM--------- 92 (677)
Q Consensus 30 ~~~~~~~~~i~~~L~~-kr~LlVlDdvw~~~~-------~~~~~l~~~~~~~~~gS~IiiTTR~~~v~~~~--------- 92 (677)
.+..+....+.+..+. ++++||+||++.... ..+..+....... .+.++|+|++...+...+
T Consensus 111 ~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~~-~~~~~il~g~~~~~l~~~l~~~~~~~~ 189 (350)
T 2qen_A 111 LSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDSL-PNLKIILTGSEVGLLHDFLKITDYESP 189 (350)
T ss_dssp CCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHHC-TTEEEEEEESSHHHHHHHHCTTCTTST
T ss_pred chHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHHhc-CCeEEEEECCcHHHHHHHHhhcCCCCc
Confidence 3455666666665543 389999999976421 1223333333222 467899999876543221
Q ss_pred --CC-CCeEecCCCChHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHhcCCchHHHHHHHHhccCCCHHHH-HHHHhh
Q 038430 93 --GS-TNIIFIEQLTEEECWSLFKRLAFFGCSFEDCERLEPIGQKIARKCKGLPIAAKVIGNLLRSKSTIKDW-QRILDS 168 (677)
Q Consensus 93 --~~-~~~~~v~~L~~~ea~~LF~~~af~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~ig~~L~~~~~~~~w-~~~l~~ 168 (677)
+. ...+++.+|+.+|+.+++.... ...... .-.+.+.++...|+|.|+++..++..+....+...+ ....+.
T Consensus 190 l~~~~~~~i~l~pl~~~e~~~~l~~~~-~~~~~~---~~~~~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~ 265 (350)
T 2qen_A 190 LYGRIAGEVLVKPFDKDTSVEFLKRGF-REVNLD---VPENEIEEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEV 265 (350)
T ss_dssp TTTCCCEEEECCCCCHHHHHHHHHHHH-HTTTCC---CCHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccCccceeeCCCCCHHHHHHHHHHHH-HHcCCC---CCHHHHHHHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHH
Confidence 11 2378999999999999997643 221111 123467889999999999999998765332222222 111111
Q ss_pred hhhhhhhcCCCccceeecccccCCCchhhhHHHhhhccCCCCceecHHHHHHHHHHcCCcCcchhhhHHHhHHHHHHHHH
Q 038430 169 EMWKAEEIGKGLLTPLLLSYNDLSSNSMVKRFFSYCAVFPKDYNMYKEELISLWMAQGYLNAEEYEEKEMTGEECFNILA 248 (677)
Q Consensus 169 ~~~~~~~~~~~i~~~l~~Sy~~L~~~~~~k~~fl~~a~fp~~~~i~~~~li~~wi~~g~i~~~~~~~~~~~~~~~~~~L~ 248 (677)
...... ..+. .+.+ . +. ..+..+..+|. +. .+...+........ - .. .......+++.|.
T Consensus 266 ~~~~~~---~~l~---~l~~-~-~~--~~~~~l~~la~---g~-~~~~~l~~~~~~~~-~-~~----~~~~~~~~l~~L~ 325 (350)
T 2qen_A 266 AKGLIM---GELE---ELRR-R-SP--RYVDILRAIAL---GY-NRWSLIRDYLAVKG-T-KI----PEPRLYALLENLK 325 (350)
T ss_dssp HHHHHH---HHHH---HHHH-H-CH--HHHHHHHHHHT---TC-CSHHHHHHHHHHTT-C-CC----CHHHHHHHHHHHH
T ss_pred HHHHHH---HHHH---HHHh-C-Ch--hHHHHHHHHHh---CC-CCHHHHHHHHHHHh-C-CC----CHHHHHHHHHHHH
Confidence 000000 0010 0111 1 34 67778888876 21 33444443332211 0 00 1123567899999
Q ss_pred HccCccccccCCCCCeeeEEe-ChhHHHHH
Q 038430 249 ARSFFQEFEKNDDDDIMSCKM-HDIVHDFA 277 (677)
Q Consensus 249 ~~sll~~~~~~~~~~~~~~~m-hdli~d~~ 277 (677)
+.+++.... + .+.+ |.+++++.
T Consensus 326 ~~gli~~~~----~---~y~~~~p~~~~~~ 348 (350)
T 2qen_A 326 KMNWIVEED----N---TYKIADPVVATVL 348 (350)
T ss_dssp HTTSEEEET----T---EEEESSHHHHHHH
T ss_pred hCCCEEecC----C---EEEEecHHHHHHH
Confidence 999997542 1 3555 66777654
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.66 E-value=1.3e-05 Score=72.76 Aligned_cols=99 Identities=12% Similarity=0.175 Sum_probs=64.8
Q ss_pred cCCcccCCCCCcCEEEecCcccccc-chhhccCCCcCEEEecCCCCccccC-cccccc----cccceeecCccCCCcccC
Q 038430 345 KIPENVGKLMHLKYLNLSELHIERL-PKTLCELYNLQKLDIRGCRNLRELP-TGIGKL----KNMRSLLNGLTCSLKYMP 418 (677)
Q Consensus 345 ~lp~~~~~l~~L~~L~Ls~~~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp-~~i~~l----~~L~~L~l~~~~~~~~~p 418 (677)
.+|.....-..|+.||+++|.|+.. -..+.++++|++|+|++|..++.-- ..+..+ ++|++|++++|..++
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT--- 128 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT--- 128 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC---
T ss_pred cCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC---
Confidence 3454333335899999999998732 3457889999999999997564321 124443 468888888885443
Q ss_pred CcCCCCCCCCccCceeeCCCcCCCCcccccccccCCcCCcccccCccCCCChh
Q 038430 419 IGISKLTSLRTLDKFAVGGGVDGGSTCRLECLKNFQLIRKCGIEGLSNVSHLD 471 (677)
Q Consensus 419 ~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~ 471 (677)
...+..+..+++|+.|.+++|..+++..
T Consensus 129 -------------------------D~Gl~~L~~~~~L~~L~L~~c~~Itd~g 156 (176)
T 3e4g_A 129 -------------------------DKGIIALHHFRNLKYLFLSDLPGVKEKE 156 (176)
T ss_dssp -------------------------HHHHHHGGGCTTCCEEEEESCTTCCCHH
T ss_pred -------------------------HHHHHHHhcCCCCCEEECCCCCCCCchH
Confidence 2234445566667777777777666643
No 159
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.63 E-value=7.3e-06 Score=76.17 Aligned_cols=90 Identities=12% Similarity=0.092 Sum_probs=52.4
Q ss_pred cccCCCcccEEEeCCC-CCCCCCCccCCcccCCCCCcCEEEecCccccc-----cchhhccCCCcCEEEecCCCCccc--
Q 038430 321 SIHGLNRLRTLLIDDE-SPPNSSLDKIPENVGKLMHLKYLNLSELHIER-----LPKTLCELYNLQKLDIRGCRNLRE-- 392 (677)
Q Consensus 321 ~~~~l~~L~~L~l~~~-~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~-----lp~~i~~l~~L~~L~L~~~~~l~~-- 392 (677)
.+...+.|++|++++| .+.......+...+...++|++|+|++|.|.. +...+...++|++|+|++|. ++.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~~g 109 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF-ISGSG 109 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC-CCHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc-CCHHH
Confidence 4555667777777753 33222223344445566677777777777652 34445556677777777776 332
Q ss_pred ---cCcccccccccceeec--Ccc
Q 038430 393 ---LPTGIGKLKNMRSLLN--GLT 411 (677)
Q Consensus 393 ---lp~~i~~l~~L~~L~l--~~~ 411 (677)
+...+...++|++|++ ++|
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N 133 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQ 133 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSS
T ss_pred HHHHHHHHHhCCCceEEEecCCCC
Confidence 3444555666777777 555
No 160
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.59 E-value=0.00028 Score=72.74 Aligned_cols=212 Identities=9% Similarity=0.035 Sum_probs=116.4
Q ss_pred hHHHHHHHHHHHcCCccEEEEEECCcCCCc---cchhhhhhhhcCCCCCcEEEEEcCchHHHHhc-----------CC-C
Q 038430 31 EFQSLMSHIHRSIEGKKNFLILNDVWDGDY---NKWAPFFLCLNHGLHGSKILVTTRNELVARMM-----------GS-T 95 (677)
Q Consensus 31 ~~~~~~~~i~~~L~~kr~LlVlDdvw~~~~---~~~~~l~~~~~~~~~gS~IiiTTR~~~v~~~~-----------~~-~ 95 (677)
........+.+.-+ ++++||+||++..+. ..+..+...+.....+.++|+|+|........ +. .
T Consensus 123 ~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~ 201 (357)
T 2fna_A 123 SFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAF 201 (357)
T ss_dssp CHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCC
T ss_pred hHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCcc
Confidence 44555555555433 599999999966321 23333222222222467899999987643321 11 2
Q ss_pred CeEecCCCChHHHHHHHHHHhhc-CCCCCCCcchhHHHHHHHHHhcCCchHHHHHHHHhccCCCHHHHHH-HHhhhhhhh
Q 038430 96 NIIFIEQLTEEECWSLFKRLAFF-GCSFEDCERLEPIGQKIARKCKGLPIAAKVIGNLLRSKSTIKDWQR-ILDSEMWKA 173 (677)
Q Consensus 96 ~~~~v~~L~~~ea~~LF~~~af~-~~~~~~~~~~~~~~~~i~~~c~GlPLal~~ig~~L~~~~~~~~w~~-~l~~~~~~~ 173 (677)
..+++.+|+.+|+.+++...+-. +..+ .. ...++..|+|.|+++..++..+....+...|-. ..+......
T Consensus 202 ~~i~l~~l~~~e~~~~l~~~~~~~~~~~---~~----~~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (357)
T 2fna_A 202 STVELKPFSREEAIEFLRRGFQEADIDF---KD----YEVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKKLI 274 (357)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHHHTCCC---CC----HHHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred ceeecCCCCHHHHHHHHHHHHHHcCCCC---Cc----HHHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHHHHH
Confidence 47899999999999999874311 1111 12 178999999999999999987654323333321 111100000
Q ss_pred hhcCCCccceeecccc--cCCCchhhhHHHhhhccCCCCceecHHHHHHHHH-HcCCcCcchhhhHHHhHHHHHHHHHHc
Q 038430 174 EEIGKGLLTPLLLSYN--DLSSNSMVKRFFSYCAVFPKDYNMYKEELISLWM-AQGYLNAEEYEEKEMTGEECFNILAAR 250 (677)
Q Consensus 174 ~~~~~~i~~~l~~Sy~--~L~~~~~~k~~fl~~a~fp~~~~i~~~~li~~wi-~~g~i~~~~~~~~~~~~~~~~~~L~~~ 250 (677)
. ..+. .+.++ .++. ..+..+..+|. +. +...+..... ..|. .. .......+++.|.+.
T Consensus 275 ~---~~l~---~~~~~~~~l~~--~~~~~l~~la~---g~--~~~~l~~~~~~~~g~--~~----~~~~~~~~L~~L~~~ 335 (357)
T 2fna_A 275 L---KEFE---NFLHGREIARK--RYLNIMRTLSK---CG--KWSDVKRALELEEGI--EI----SDSEIYNYLTQLTKH 335 (357)
T ss_dssp H---HHHH---HHHTTCGGGHH--HHHHHHHHHTT---CB--CHHHHHHHHHHHHCS--CC----CHHHHHHHHHHHHHT
T ss_pred H---HHHH---HHhhccccccH--HHHHHHHHHHc---CC--CHHHHHHHHHHhcCC--CC----CHHHHHHHHHHHHhC
Confidence 0 0000 01111 4555 67888888887 22 3344332211 1121 00 112356789999999
Q ss_pred cCccccccCCCCCeeeEEe-ChhHHHH
Q 038430 251 SFFQEFEKNDDDDIMSCKM-HDIVHDF 276 (677)
Q Consensus 251 sll~~~~~~~~~~~~~~~m-hdli~d~ 276 (677)
+++.... + .|.+ |++++++
T Consensus 336 gli~~~~----~---~y~f~~~~~~~~ 355 (357)
T 2fna_A 336 SWIIKEG----E---KYCPSEPLISLA 355 (357)
T ss_dssp TSEEESS----S---CEEESSHHHHHH
T ss_pred CCEEecC----C---EEEecCHHHHHh
Confidence 9987542 1 3554 6777765
No 161
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.51 E-value=1.1e-05 Score=75.02 Aligned_cols=110 Identities=15% Similarity=0.077 Sum_probs=82.4
Q ss_pred CCceEEEEEEec-CCCc-----ccccccCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccc-----cc
Q 038430 302 GGKVRHLGLKFK-GGAS-----FPMSIHGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIER-----LP 370 (677)
Q Consensus 302 ~~~l~~L~l~~~-~~~~-----~p~~~~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~-----lp 370 (677)
...++.|++++| .+.. +...+...++|++|++++|.+.......+...+...++|++|+|++|.|.. +.
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~ 114 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV 114 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence 567889999998 7743 345677789999999997544333333344556667899999999999883 56
Q ss_pred hhhccCCCcCEEEe--cCCCCccc-----cCcccccccccceeecCccC
Q 038430 371 KTLCELYNLQKLDI--RGCRNLRE-----LPTGIGKLKNMRSLLNGLTC 412 (677)
Q Consensus 371 ~~i~~l~~L~~L~L--~~~~~l~~-----lp~~i~~l~~L~~L~l~~~~ 412 (677)
..+...++|++|+| ++|. ++. +...+...++|++|++++|.
T Consensus 115 ~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 115 EALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 77888899999999 7787 432 34456666889999999884
No 162
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.48 E-value=0.0047 Score=64.17 Aligned_cols=236 Identities=9% Similarity=-0.058 Sum_probs=132.8
Q ss_pred CeEEecCCCCHHHHHHHHHHHhcCCCCC-CchHHHHHHHHHHHcC--CccEEEEEECCcCCCcc--chhhhhhhhc---C
Q 038430 1 MWVCVSDTFEEISVANAIIEGLGESTSS-LSEFQSLMSHIHRSIE--GKKNFLILNDVWDGDYN--KWAPFFLCLN---H 72 (677)
Q Consensus 1 ~WV~vs~~~~~~~i~~~i~~~l~~~~~~-~~~~~~~~~~i~~~L~--~kr~LlVlDdvw~~~~~--~~~~l~~~~~---~ 72 (677)
+||+.....+...++..++++++..... ..+..+....+.+.+. +++.+||||+++..... ....+...+. .
T Consensus 82 ~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~ 161 (387)
T 2v1u_A 82 IYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQE 161 (387)
T ss_dssp EEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGC
T ss_pred EEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhh
Confidence 3567777788899999999999765432 2335556666666664 56889999999664211 1222332222 1
Q ss_pred C--CCCcEEEEEcCch--------HHHHhcCCCCeEecCCCChHHHHHHHHHHhhc-CCCCCCCcchhHHHHHHHHHhc-
Q 038430 73 G--LHGSKILVTTRNE--------LVARMMGSTNIIFIEQLTEEECWSLFKRLAFF-GCSFEDCERLEPIGQKIARKCK- 140 (677)
Q Consensus 73 ~--~~gS~IiiTTR~~--------~v~~~~~~~~~~~v~~L~~~ea~~LF~~~af~-~~~~~~~~~~~~~~~~i~~~c~- 140 (677)
. ..+..+|.||+.. .+..++. ...+.+++++.++..+++...+-. .......+ +....++++++
T Consensus 162 ~~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~-~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~l~~~~~~ 237 (387)
T 2v1u_A 162 LGDRVWVSLVGITNSLGFVENLEPRVKSSLG-EVELVFPPYTAPQLRDILETRAEEAFNPGVLDP---DVVPLCAALAAR 237 (387)
T ss_dssp C-----CEEEEECSCSTTSSSSCHHHHTTTT-SEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCS---SHHHHHHHHHHS
T ss_pred cCCCceEEEEEEECCCchHhhhCHHHHhcCC-CeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHH
Confidence 1 3456788888765 2322222 147899999999999999887531 01111112 34566777777
Q ss_pred --CCch-HHHHHHHHhc-----c--CCCHHHHHHHHhhhhhhhhhcCCCccceeecccccCCCchhhhHHHhhhc-cCCC
Q 038430 141 --GLPI-AAKVIGNLLR-----S--KSTIKDWQRILDSEMWKAEEIGKGLLTPLLLSYNDLSSNSMVKRFFSYCA-VFPK 209 (677)
Q Consensus 141 --GlPL-al~~ig~~L~-----~--~~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~Sy~~L~~~~~~k~~fl~~a-~fp~ 209 (677)
|.|- |+..+..+.. + .-+.+.++.+++..... .+.-++..++. ..+..+.-.+ .+..
T Consensus 238 ~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~~~----------~~~~~~~~l~~--~~~~~l~a~~~~~~~ 305 (387)
T 2v1u_A 238 EHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEIERD----------RVSEVVRTLPL--HAKLVLLSIMMLEDG 305 (387)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHHH----------HHHHHHHSSCH--HHHHHHHHHHHHSSS
T ss_pred hccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhhc----------hHHHHHHcCCH--HHHHHHHHHHHHhcC
Confidence 9994 3333332221 1 13566677666542111 12335566766 5555555444 3322
Q ss_pred CceecHHHHHHHHHH----cCCcCcchhhhHHHhHHHHHHHHHHccCccccc
Q 038430 210 DYNMYKEELISLWMA----QGYLNAEEYEEKEMTGEECFNILAARSFFQEFE 257 (677)
Q Consensus 210 ~~~i~~~~li~~wi~----~g~i~~~~~~~~~~~~~~~~~~L~~~sll~~~~ 257 (677)
...+...++.+.... .| .... .......+++.|...+++....
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~l~~L~~~gli~~~~ 352 (387)
T 2v1u_A 306 GRPASTGEIYERYKELTSTLG-LEHV----TLRRVSGIISELDMLGIVKSRV 352 (387)
T ss_dssp SCCEEHHHHHHHHHHHHHHTT-CCCC----CHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCcHHHHHHHHHHHHHhcC-CCCC----CHHHHHHHHHHHHhCCCeEEEe
Confidence 224545544443321 22 1111 1235667899999999998754
No 163
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.44 E-value=0.00048 Score=72.23 Aligned_cols=81 Identities=11% Similarity=0.129 Sum_probs=52.4
Q ss_pred cCCCCCCcEEEEecCCCCCCChh-HhhccCCCeEEEeCCCCCCcCCC--CCCcc-cceeeccccccceEeCCccccCCCC
Q 038430 551 LQPPLNVEKLWILFNGGNILPKW-LTSLTNLSDLKLVFCENCEQLPP--LGKLP-LEKLELCHLKSVKRVGNEFLEIEES 626 (677)
Q Consensus 551 l~~~~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~c~~~~~l~~--l~~l~-L~~L~l~~~~~l~~i~~~~~~~~~~ 626 (677)
+..+++|+.+.+.. .+..++.. +..+.+|+.+.|..+ ++.+.. +.+.. |+.+.|- .+++.|+...+
T Consensus 284 F~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~~L~~i~ip--~sv~~I~~~aF----- 353 (394)
T 4gt6_A 284 FMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG--ITQILDDAFAGCEQLERIAIP--SSVTKIPESAF----- 353 (394)
T ss_dssp TTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEC--TTCCBCCGGGG-----
T ss_pred cccccccccccCCC-cccccCceeecCCCCcCEEEeCCc--ccEehHhHhhCCCCCCEEEEC--cccCEEhHhHh-----
Confidence 44567777777743 33445544 447788888888653 444443 66777 8888885 34777766554
Q ss_pred CCCCCCCCCCCcccCCCccceeeecccc
Q 038430 627 EDDPSSSSSSSSVTAFPKVKSLEIKELE 654 (677)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 654 (677)
..+++|+++.+.+..
T Consensus 354 -------------~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 354 -------------SNCTALNNIEYSGSR 368 (394)
T ss_dssp -------------TTCTTCCEEEESSCH
T ss_pred -------------hCCCCCCEEEECCce
Confidence 567888888887643
No 164
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.41 E-value=0.00013 Score=71.38 Aligned_cols=79 Identities=23% Similarity=0.233 Sum_probs=45.2
Q ss_pred CCCCcCEEEecCcccccc---chhhccCCCcCEEEecCCCCccccCccccccc--ccceeecCccCCCcccCC-------
Q 038430 352 KLMHLKYLNLSELHIERL---PKTLCELYNLQKLDIRGCRNLRELPTGIGKLK--NMRSLLNGLTCSLKYMPI------- 419 (677)
Q Consensus 352 ~l~~L~~L~Ls~~~i~~l---p~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~--~L~~L~l~~~~~~~~~p~------- 419 (677)
++++|+.|+|++|.|+.+ |..+..+++|+.|+|++|. +..+. .+..+. +|+.|++++|.....+|.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 456677777777776643 3445567777777777766 54442 244444 677777777754444432
Q ss_pred cCCCCCCCCccCc
Q 038430 420 GISKLTSLRTLDK 432 (677)
Q Consensus 420 ~i~~l~~L~~L~l 432 (677)
.+..+.+|+.|+.
T Consensus 246 il~~~P~L~~LDg 258 (267)
T 3rw6_A 246 IRERFPKLLRLDG 258 (267)
T ss_dssp HHHHCTTCCEESS
T ss_pred HHHHCcccCeECC
Confidence 1344555555553
No 165
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.32 E-value=0.011 Score=61.21 Aligned_cols=233 Identities=9% Similarity=-0.007 Sum_probs=130.5
Q ss_pred eEEecCCC-CHHHHHHHHHHHhcCCCCC--CchHHHHHHHHHHHcCCccEEEEEECCcCCCccc-hhh-hhhhhcCCCCC
Q 038430 2 WVCVSDTF-EEISVANAIIEGLGESTSS--LSEFQSLMSHIHRSIEGKKNFLILNDVWDGDYNK-WAP-FFLCLNHGLHG 76 (677)
Q Consensus 2 WV~vs~~~-~~~~i~~~i~~~l~~~~~~--~~~~~~~~~~i~~~L~~kr~LlVlDdvw~~~~~~-~~~-l~~~~~~~~~g 76 (677)
||+.+... +...++.++++++.+.... ..+.......+.+.++.++.+|||||++...... .+. +...+... .+
T Consensus 86 ~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~ 164 (384)
T 2qby_B 86 YVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD-AN 164 (384)
T ss_dssp EEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS-SC
T ss_pred EEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC-cc
Confidence 45555555 7888899999988443221 2234556777788888777799999997642221 222 22222222 57
Q ss_pred cEEEEEcCchH--------HHHhcCCCCeEecCCCChHHHHHHHHHHhhcC-CCCCCCcchhHHHHHHHHHhc---CCch
Q 038430 77 SKILVTTRNEL--------VARMMGSTNIIFIEQLTEEECWSLFKRLAFFG-CSFEDCERLEPIGQKIARKCK---GLPI 144 (677)
Q Consensus 77 S~IiiTTR~~~--------v~~~~~~~~~~~v~~L~~~ea~~LF~~~af~~-~~~~~~~~~~~~~~~i~~~c~---GlPL 144 (677)
.+||+||+... +...++ ..+++++++.++..++|...+-.. ..... -.+....++++|+ |.|-
T Consensus 165 ~~iI~~t~~~~~~~~l~~~l~sr~~--~~i~l~~l~~~~~~~il~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~G~~r 239 (384)
T 2qby_B 165 ISVIMISNDINVRDYMEPRVLSSLG--PSVIFKPYDAEQLKFILSKYAEYGLIKGTY---DDEILSYIAAISAKEHGDAR 239 (384)
T ss_dssp EEEEEECSSTTTTTTSCHHHHHTCC--CEEEECCCCHHHHHHHHHHHHHHTSCTTSC---CSHHHHHHHHHHHTTCCCHH
T ss_pred eEEEEEECCCchHhhhCHHHHhcCC--CeEEECCCCHHHHHHHHHHHHHhhcccCCc---CHHHHHHHHHHHHhccCCHH
Confidence 78999998652 222222 389999999999999999875311 11111 1234667777777 8877
Q ss_pred -HHHHHHHHh--c---cCCCHHHHHHHHhhhhhhhhhcCCCccceeecccccCCCchhhhHHHhhhccCCCCceecHHHH
Q 038430 145 -AAKVIGNLL--R---SKSTIKDWQRILDSEMWKAEEIGKGLLTPLLLSYNDLSSNSMVKRFFSYCAVFPKDYNMYKEEL 218 (677)
Q Consensus 145 -al~~ig~~L--~---~~~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~Sy~~L~~~~~~k~~fl~~a~fp~~~~i~~~~l 218 (677)
|+..+..+. . ..-+.+.++.+++.... ..+.-+++.|+. ..+..+.-++....+..+. +..
T Consensus 240 ~a~~~l~~a~~~a~~~~~i~~~~v~~~~~~~~~----------~~~~~~~~~l~~--~~~~~l~al~~~~~~~~~~-~~~ 306 (384)
T 2qby_B 240 KAVNLLFRAAQLASGGGIIRKEHVDKAIVDYEQ----------ERLIEAVKALPF--HYKLALRSLIESEDVMSAH-KMY 306 (384)
T ss_dssp HHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHHH----------HHHHHHHHSSCH--HHHHHHHHHHTCCBHHHHH-HHH
T ss_pred HHHHHHHHHHHHhcCCCccCHHHHHHHHHHHhc----------chHHHHHHcCCH--HHHHHHHHHHHhcccChHH-HHH
Confidence 444333322 1 22456777777764211 123345567766 5555555555411100110 111
Q ss_pred HHHHHHcCCcCcchhhhHHHhHHHHHHHHHHccCcccccc
Q 038430 219 ISLWMAQGYLNAEEYEEKEMTGEECFNILAARSFFQEFEK 258 (677)
Q Consensus 219 i~~wi~~g~i~~~~~~~~~~~~~~~~~~L~~~sll~~~~~ 258 (677)
.......| .... ......++++.|...+++.....
T Consensus 307 ~~~~~~~g-~~~~----~~~~~~~~l~~L~~~gli~~~~~ 341 (384)
T 2qby_B 307 TDLCNKFK-QKPL----SYRRFSDIISELDMFGIVKIRII 341 (384)
T ss_dssp HHHHHHTT-CCCC----CHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHcC-CCCC----CHHHHHHHHHHHHhCCCEEEEec
Confidence 11111122 1111 12345678899999999987544
No 166
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.27 E-value=0.001 Score=64.07 Aligned_cols=105 Identities=12% Similarity=0.088 Sum_probs=75.7
Q ss_pred CccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEEEcCchHHH-Hh-cCCCCeEecCCCChHHHHHHHHHHhhcCCCC
Q 038430 45 GKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTTRNELVA-RM-MGSTNIIFIEQLTEEECWSLFKRLAFFGCSF 122 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiTTR~~~v~-~~-~~~~~~~~v~~L~~~ea~~LF~~~af~~~~~ 122 (677)
+++.+||+||++..+...+..+...+.....+.++|+||+..... .. ......+++++++.++..+++...+.....
T Consensus 125 ~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~- 203 (250)
T 1njg_A 125 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI- 203 (250)
T ss_dssp SSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTC-
T ss_pred CCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCC-
Confidence 467999999998765567777777777666678899988765311 11 112358999999999999999987754322
Q ss_pred CCCcchhHHHHHHHHHhcCCchHHHHHHHHh
Q 038430 123 EDCERLEPIGQKIARKCKGLPIAAKVIGNLL 153 (677)
Q Consensus 123 ~~~~~~~~~~~~i~~~c~GlPLal~~ig~~L 153 (677)
. --.+....++++|+|.|..+..+...+
T Consensus 204 ~---~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 204 A---HEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp C---BCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred C---CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 1 123457789999999999988776443
No 167
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.27 E-value=0.023 Score=58.95 Aligned_cols=238 Identities=12% Similarity=0.005 Sum_probs=136.2
Q ss_pred eEEecCCCCHHHHHHHHHHHhcCCCCC-CchHHHHHHHHHHHcC--CccEEEEEECCcCCCccchhhhhhhhcCCC----
Q 038430 2 WVCVSDTFEEISVANAIIEGLGESTSS-LSEFQSLMSHIHRSIE--GKKNFLILNDVWDGDYNKWAPFFLCLNHGL---- 74 (677)
Q Consensus 2 WV~vs~~~~~~~i~~~i~~~l~~~~~~-~~~~~~~~~~i~~~L~--~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~---- 74 (677)
||+.+...+...++..+++.++..... ..+.......+.+.+. +++.+||+|+++..+......+...+....
T Consensus 78 ~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~ 157 (389)
T 1fnn_A 78 YINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGA 157 (389)
T ss_dssp EEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSS
T ss_pred EEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCc
Confidence 455567778889999999998764322 2244555555555554 568899999998765445555555553321
Q ss_pred CCcEEEEEcCchHHHHhcC-------CCCeEecCCCChHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHh--------
Q 038430 75 HGSKILVTTRNELVARMMG-------STNIIFIEQLTEEECWSLFKRLAFFGCSFEDCERLEPIGQKIARKC-------- 139 (677)
Q Consensus 75 ~gS~IiiTTR~~~v~~~~~-------~~~~~~v~~L~~~ea~~LF~~~af~~~~~~~~~~~~~~~~~i~~~c-------- 139 (677)
.+..||+||+...+...+. ....+.+++++.++..+++...+-...... .--.+....+++++
T Consensus 158 ~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~ 235 (389)
T 1fnn_A 158 FRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEG--SYSEDILQMIADITGAQTPLDT 235 (389)
T ss_dssp CCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTT--SSCHHHHHHHHHHHSBSSTTCT
T ss_pred CCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCC--CCCHHHHHHHHHHHhhcccCCC
Confidence 3667888887765443322 123799999999999999988753210000 11234567788888
Q ss_pred -cCCchHHHHHHHH-hc-----cC--CCHHHHHHHHhhhhhhhhhcCCCccceeecccccCCCchhhhHHHhhhccCC--
Q 038430 140 -KGLPIAAKVIGNL-LR-----SK--STIKDWQRILDSEMWKAEEIGKGLLTPLLLSYNDLSSNSMVKRFFSYCAVFP-- 208 (677)
Q Consensus 140 -~GlPLal~~ig~~-L~-----~~--~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~Sy~~L~~~~~~k~~fl~~a~fp-- 208 (677)
+|.|-.+..+... .. +. -+.+....+.... . ...+.-.+..|+. +.+.++..++.+.
T Consensus 236 ~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~-------~---~~~~~~~l~~l~~--~~~~~L~~l~~~~~~ 303 (389)
T 1fnn_A 236 NRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEV-------L---FGISEEVLIGLPL--HEKLFLLAIVRSLKI 303 (389)
T ss_dssp TSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHH-------S---CCCCHHHHHHSCH--HHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH-------h---hhhHHHHHHcCCH--HHHHHHHHHHHHHhh
Confidence 7887554433322 21 11 2233333333321 0 1122334556766 5666666555443
Q ss_pred -CCceecHHHHHHHHHH----cCCcCcchhhhHHHhHHHHHHHHHHccCcccccc
Q 038430 209 -KDYNMYKEELISLWMA----QGYLNAEEYEEKEMTGEECFNILAARSFFQEFEK 258 (677)
Q Consensus 209 -~~~~i~~~~li~~wi~----~g~i~~~~~~~~~~~~~~~~~~L~~~sll~~~~~ 258 (677)
.+..+....+...+.. .|..+ .. ......+++.|...+++.....
T Consensus 304 ~~~~~~~~~~i~~~~~~~~~~~~~~~-~~----~~~~~~~l~~L~~~gli~~~~~ 353 (389)
T 1fnn_A 304 SHTPYITFGDAEESYKIVCEEYGERP-RV----HSQLWSYLNDLREKGIVETRQN 353 (389)
T ss_dssp HCSSCEEHHHHHHHHHHHHHHTTCCC-CC----HHHHHHHHHHHHHTTSSEEEEC
T ss_pred ccCCCccHHHHHHHHHHHHHHcCCCC-CC----HHHHHHHHHHHHhCCCeEEeee
Confidence 2224555555554432 22111 11 1235678999999999987654
No 168
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.24 E-value=0.00026 Score=69.28 Aligned_cols=84 Identities=20% Similarity=0.202 Sum_probs=62.0
Q ss_pred cCCCcccEEEeCCCCCCCCCCccCCcccCCCCCcCEEEecCccccccchhhccCC--CcCEEEecCCCCccccCc-----
Q 038430 323 HGLNRLRTLLIDDESPPNSSLDKIPENVGKLMHLKYLNLSELHIERLPKTLCELY--NLQKLDIRGCRNLRELPT----- 395 (677)
Q Consensus 323 ~~l~~L~~L~l~~~~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~~lp~~i~~l~--~L~~L~L~~~~~l~~lp~----- 395 (677)
.++++|++|+|++|.+. .+..+|..+..+++|++|+|++|.|+.+ ..+..+. +|++|+|++|+....+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~--~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~ 243 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLY--RLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYI 243 (267)
T ss_dssp HHCTTCCEEECTTSCCC--CCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHH
T ss_pred hhCCCCCEEECCCCCCC--CCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHH
Confidence 45788999999974432 1234556667899999999999999876 3345555 999999999995555652
Q ss_pred --ccccccccceeecC
Q 038430 396 --GIGKLKNMRSLLNG 409 (677)
Q Consensus 396 --~i~~l~~L~~L~l~ 409 (677)
.+..+++|+.||-.
T Consensus 244 ~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 244 SAIRERFPKLLRLDGH 259 (267)
T ss_dssp HHHHHHCTTCCEESSC
T ss_pred HHHHHHCcccCeECCc
Confidence 36788999988754
No 169
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.99 E-value=0.0056 Score=63.97 Aligned_cols=100 Identities=9% Similarity=0.125 Sum_probs=63.9
Q ss_pred hcCCCCCCcEEEEecCCCCCCCh-hHhhccCCCeEEEeCCCCCCcCCC--CCCcc-cceeeccccccceEeCCccccCCC
Q 038430 550 ALQPPLNVEKLWILFNGGNILPK-WLTSLTNLSDLKLVFCENCEQLPP--LGKLP-LEKLELCHLKSVKRVGNEFLEIEE 625 (677)
Q Consensus 550 ~l~~~~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~c~~~~~l~~--l~~l~-L~~L~l~~~~~l~~i~~~~~~~~~ 625 (677)
.+..+.+|+.+.+.... ..+.. .+.++++|+.+.+.. .++.++. +.+.. |+.+.|.. .++.|+...+
T Consensus 260 aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF---- 330 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPE--GITQILDDAF---- 330 (394)
T ss_dssp TTTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTT----
T ss_pred eeeecccccEEeccccc-ceecCcccccccccccccCCC--cccccCceeecCCCCcCEEEeCC--cccEehHhHh----
Confidence 45566788888875543 23332 345788999999863 4566664 77788 99999963 5888877654
Q ss_pred CCCCCCCCCCCCcccCCCccceeeecccccCccccccCCccccCCCccccc
Q 038430 626 SEDDPSSSSSSSSVTAFPKVKSLEIKELEEGNYRITRKENISIIPRLSSLR 676 (677)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~p~L~~L~ 676 (677)
..+.+|+++.+-..- +.+.. ..+..+++|+.++
T Consensus 331 --------------~~C~~L~~i~ip~sv-~~I~~---~aF~~C~~L~~i~ 363 (394)
T 4gt6_A 331 --------------AGCEQLERIAIPSSV-TKIPE---SAFSNCTALNNIE 363 (394)
T ss_dssp --------------TTCTTCCEEEECTTC-CBCCG---GGGTTCTTCCEEE
T ss_pred --------------hCCCCCCEEEECccc-CEEhH---hHhhCCCCCCEEE
Confidence 567889999884211 32321 2222467777654
No 170
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.71 E-value=0.015 Score=60.26 Aligned_cols=78 Identities=15% Similarity=0.161 Sum_probs=50.1
Q ss_pred cCCCCCCcEEEEecCCCCCCChh-HhhccCCCeEEEeCCCCCCcCCC--CCCcc-cceeeccccccceEeCCccccCCCC
Q 038430 551 LQPPLNVEKLWILFNGGNILPKW-LTSLTNLSDLKLVFCENCEQLPP--LGKLP-LEKLELCHLKSVKRVGNEFLEIEES 626 (677)
Q Consensus 551 l~~~~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~c~~~~~l~~--l~~l~-L~~L~l~~~~~l~~i~~~~~~~~~~ 626 (677)
+..+.+|+.+.+..+ +..++.. +..+++|+.+.+.++ .++.++. +.+.. |+.+.|. ++++.|+...+
T Consensus 259 F~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~-~i~~I~~~aF~~c~~L~~i~lp--~~l~~I~~~aF----- 329 (379)
T 4h09_A 259 LQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNS-AIETLEPRVFMDCVKLSSVTLP--TALKTIQVYAF----- 329 (379)
T ss_dssp TTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCT-TCCEECTTTTTTCTTCCEEECC--TTCCEECTTTT-----
T ss_pred cceeehhcccccccc-ceecccccccccccccccccccc-ccceehhhhhcCCCCCCEEEcC--ccccEEHHHHh-----
Confidence 344567777777443 3344433 447788888888765 5555553 66777 8888885 34777766544
Q ss_pred CCCCCCCCCCCcccCCCccceeee
Q 038430 627 EDDPSSSSSSSSVTAFPKVKSLEI 650 (677)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~L~~L~l 650 (677)
..+.+|+++.+
T Consensus 330 -------------~~C~~L~~i~i 340 (379)
T 4h09_A 330 -------------KNCKALSTISY 340 (379)
T ss_dssp -------------TTCTTCCCCCC
T ss_pred -------------hCCCCCCEEEE
Confidence 45667777776
No 171
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.33 E-value=0.029 Score=52.77 Aligned_cols=102 Identities=6% Similarity=-0.109 Sum_probs=70.6
Q ss_pred CccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEEEcCchHH-HHhc-CCCCeEecCCCChHHHHHHHHHHhhcCCCC
Q 038430 45 GKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTTRNELV-ARMM-GSTNIIFIEQLTEEECWSLFKRLAFFGCSF 122 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiTTR~~~v-~~~~-~~~~~~~v~~L~~~ea~~LF~~~af~~~~~ 122 (677)
.++.+||+||++.........+...+.....+.++|+||+.... .... .....+++++++.++..+++...+......
T Consensus 101 ~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~ 180 (226)
T 2chg_A 101 APFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVK 180 (226)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC
T ss_pred cCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCCCCHHHHHHHHHHHHHHcCCC
Confidence 57889999999876555566677777665667889999876531 1111 112379999999999999998876432221
Q ss_pred CCCcchhHHHHHHHHHhcCCchHHHHHH
Q 038430 123 EDCERLEPIGQKIARKCKGLPIAAKVIG 150 (677)
Q Consensus 123 ~~~~~~~~~~~~i~~~c~GlPLal~~ig 150 (677)
--.+....+++.++|.|..+..+.
T Consensus 181 ----~~~~~~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 181 ----ITEDGLEALIYISGGDFRKAINAL 204 (226)
T ss_dssp ----BCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 123456778899999999765444
No 172
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.06 E-value=0.059 Score=55.65 Aligned_cols=68 Identities=13% Similarity=0.079 Sum_probs=50.4
Q ss_pred hcCCCCCCcEEEEecCCCCCCChh-HhhccCCCeEEEeCCCCCCcCCC--CCCcc-cceeeccccccceEeCCccc
Q 038430 550 ALQPPLNVEKLWILFNGGNILPKW-LTSLTNLSDLKLVFCENCEQLPP--LGKLP-LEKLELCHLKSVKRVGNEFL 621 (677)
Q Consensus 550 ~l~~~~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~c~~~~~l~~--l~~l~-L~~L~l~~~~~l~~i~~~~~ 621 (677)
.+..+++|+++.+.++.+..++.. +.++.+|+.+.|..+ ++.++. +.+.. |+.+.+. .+++.|+...+
T Consensus 281 aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~ip--~~v~~I~~~aF 352 (379)
T 4h09_A 281 LCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA--LKTIQVYAFKNCKALSTISYP--KSITLIESGAF 352 (379)
T ss_dssp TTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCCCCCC--TTCCEECTTTT
T ss_pred ccccccccccccccccccceehhhhhcCCCCCCEEEcCcc--ccEEHHHHhhCCCCCCEEEEC--CccCEEchhHh
Confidence 456678999999988877766544 568899999999753 555553 77788 9998885 35888876544
No 173
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.94 E-value=0.015 Score=60.31 Aligned_cols=237 Identities=9% Similarity=-0.003 Sum_probs=125.3
Q ss_pred eEEecCCCCHHHHHHHHHHHhcCCCCC-CchHHHHHHHHHHHcC--CccEEEEEECCcCCC----ccchhhhhhhhcC-C
Q 038430 2 WVCVSDTFEEISVANAIIEGLGESTSS-LSEFQSLMSHIHRSIE--GKKNFLILNDVWDGD----YNKWAPFFLCLNH-G 73 (677)
Q Consensus 2 WV~vs~~~~~~~i~~~i~~~l~~~~~~-~~~~~~~~~~i~~~L~--~kr~LlVlDdvw~~~----~~~~~~l~~~~~~-~ 73 (677)
||+.+...+...++..++++++..... ..+..+....+.+.+. +++.+||+|+++... ......+...+.. .
T Consensus 81 ~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~ 160 (386)
T 2qby_A 81 YINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVN 160 (386)
T ss_dssp EEEHHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCC
T ss_pred EEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcC
Confidence 455556667778888888887654322 2234555555555554 458999999996531 2233334333422 2
Q ss_pred CCCcEEEEEcCchHHHHhcC-------CCCeEecCCCChHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHhc---CCc
Q 038430 74 LHGSKILVTTRNELVARMMG-------STNIIFIEQLTEEECWSLFKRLAFFGCSFEDCERLEPIGQKIARKCK---GLP 143 (677)
Q Consensus 74 ~~gS~IiiTTR~~~v~~~~~-------~~~~~~v~~L~~~ea~~LF~~~af~~~~~~~~~~~~~~~~~i~~~c~---GlP 143 (677)
..+..+|+||+.......+. ....+++++++.++..+++...+-...... .--.+....+++.++ |.|
T Consensus 161 ~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~G~~ 238 (386)
T 2qby_A 161 KSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPG--VLPDNVIKLCAALAAREHGDA 238 (386)
T ss_dssp C--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSS--CSCHHHHHHHHHHHHHTTCCH
T ss_pred CCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCC--CCCHHHHHHHHHHHHHhcCCH
Confidence 33556788887654322221 124799999999999999988642111000 122345666777777 998
Q ss_pred hHHHH-HHHHhc-----c--CCCHHHHHHHHhhhhhhhhhcCCCccceeecccccCCCchhhhHHHhhhccCCC-C-cee
Q 038430 144 IAAKV-IGNLLR-----S--KSTIKDWQRILDSEMWKAEEIGKGLLTPLLLSYNDLSSNSMVKRFFSYCAVFPK-D-YNM 213 (677)
Q Consensus 144 Lal~~-ig~~L~-----~--~~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~Sy~~L~~~~~~k~~fl~~a~fp~-~-~~i 213 (677)
..+.. +..+.. + .-+.+.++.+++.... ..+.-.+..++. ..+..+.-++...+ + ..+
T Consensus 239 r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~~----------~~~~~~~~~l~~--~~~~il~ai~~~~~~g~~~~ 306 (386)
T 2qby_A 239 RRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIER----------DRVRDIILTLPF--HSKLVLMAVVSISSEENVVS 306 (386)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHH----------HHHHHHHHTSCH--HHHHHHHHHHHHC-----CE
T ss_pred HHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHhh----------chHHHHHHcCCH--HHHHHHHHHHHHHhcCCCce
Confidence 84433 332221 1 2345666666553211 122334556665 55555554543211 1 123
Q ss_pred cHHHHHHHHH--H--cCCcCcchhhhHHHhHHHHHHHHHHccCccccc
Q 038430 214 YKEELISLWM--A--QGYLNAEEYEEKEMTGEECFNILAARSFFQEFE 257 (677)
Q Consensus 214 ~~~~li~~wi--~--~g~i~~~~~~~~~~~~~~~~~~L~~~sll~~~~ 257 (677)
...++...+. + .| +... .......+++.|...+++....
T Consensus 307 ~~~~l~~~~~~~~~~~g-~~~~----~~~~~~~~l~~L~~~gli~~~~ 349 (386)
T 2qby_A 307 TTGAVYETYLNICKKLG-VEAV----TQRRVSDIINELDMVGILTAKV 349 (386)
T ss_dssp EHHHHHHHHHHHHHHHT-CCCC----CHHHHHHHHHHHHHHTSEEEEE
T ss_pred eHHHHHHHHHHHHHhcC-CCCC----CHHHHHHHHHHHHhCCCEEEEe
Confidence 3433322221 1 12 1111 1123566789999999997643
No 174
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.90 E-value=0.094 Score=52.63 Aligned_cols=104 Identities=9% Similarity=0.054 Sum_probs=70.6
Q ss_pred CCccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEEEcCchH-HHHhc-CCCCeEecCCCChHHHHHHHHHHhhcCCC
Q 038430 44 EGKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTTRNEL-VARMM-GSTNIIFIEQLTEEECWSLFKRLAFFGCS 121 (677)
Q Consensus 44 ~~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiTTR~~~-v~~~~-~~~~~~~v~~L~~~ea~~LF~~~af~~~~ 121 (677)
.+++.+||+||++......+..+...+.....+.++|+||+... +...+ .....+++++++.++..+++...+.....
T Consensus 105 ~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~ 184 (323)
T 1sxj_B 105 PGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDV 184 (323)
T ss_dssp TTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeecCCCHHHHHHHHHHHHHHcCC
Confidence 44688999999988655566677777766556778888887642 11111 12348999999999999999887642221
Q ss_pred CCCCcchhHHHHHHHHHhcCCchH-HHHHHH
Q 038430 122 FEDCERLEPIGQKIARKCKGLPIA-AKVIGN 151 (677)
Q Consensus 122 ~~~~~~~~~~~~~i~~~c~GlPLa-l~~ig~ 151 (677)
. --.+....+++.|+|.|.. +..+..
T Consensus 185 -~---~~~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 185 -K---YTNDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp -C---BCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -C---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 1 1234567899999999954 444443
No 175
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.40 E-value=0.065 Score=45.88 Aligned_cols=42 Identities=19% Similarity=0.233 Sum_probs=27.4
Q ss_pred cCCcccCCCCCcCEEEecCccccccchh-hccCCCcCEEEecCCC
Q 038430 345 KIPENVGKLMHLKYLNLSELHIERLPKT-LCELYNLQKLDIRGCR 388 (677)
Q Consensus 345 ~lp~~~~~l~~L~~L~Ls~~~i~~lp~~-i~~l~~L~~L~L~~~~ 388 (677)
.+|..+. .+|++|+|++|.|+.+|.. |..+++|++|+|.+|+
T Consensus 24 ~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 24 SLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred cCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 5554432 3577777777777777654 5667777777777665
No 176
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=93.84 E-value=0.17 Score=50.87 Aligned_cols=105 Identities=13% Similarity=0.058 Sum_probs=65.1
Q ss_pred CccEEEEEECCcCCCccchhhhhhhhcCCC------------------CCcEEEEEcCchH-HHHhc--CCCCeEecCCC
Q 038430 45 GKKNFLILNDVWDGDYNKWAPFFLCLNHGL------------------HGSKILVTTRNEL-VARMM--GSTNIIFIEQL 103 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~------------------~gS~IiiTTR~~~-v~~~~--~~~~~~~v~~L 103 (677)
.+..+|++|++..........+...+.... .+.++|.||.... +...+ .....+.++++
T Consensus 89 ~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~ 168 (324)
T 1hqc_A 89 EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYY 168 (324)
T ss_dssp CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEECCCC
T ss_pred cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEecCCC
Confidence 356789999997764444444544443321 2345666665432 11111 01347999999
Q ss_pred ChHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHhcCCchHHHHHHHHh
Q 038430 104 TEEECWSLFKRLAFFGCSFEDCERLEPIGQKIARKCKGLPIAAKVIGNLL 153 (677)
Q Consensus 104 ~~~ea~~LF~~~af~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~ig~~L 153 (677)
+.+|..+++...+..... . --.+....++.++.|.|-.+..+...+
T Consensus 169 ~~~e~~~~l~~~~~~~~~-~---~~~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 169 TPEELAQGVMRDARLLGV-R---ITEEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp CHHHHHHHHHHHHHTTTC-C---CCHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCC-C---CCHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 999999998887643222 1 123557889999999998887766544
No 177
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.66 E-value=0.073 Score=45.53 Aligned_cols=53 Identities=21% Similarity=0.358 Sum_probs=43.0
Q ss_pred CEEEecCcccc--ccchhhccCCCcCEEEecCCCCccccCcc-cccccccceeecCccC
Q 038430 357 KYLNLSELHIE--RLPKTLCELYNLQKLDIRGCRNLRELPTG-IGKLKNMRSLLNGLTC 412 (677)
Q Consensus 357 ~~L~Ls~~~i~--~lp~~i~~l~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~l~~~~ 412 (677)
..++-+++.++ .+|..+. .+|++|+|++|. +..+|.. +..+++|+.|++.+|.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCc-CCccChhhhhhccccCEEEecCCC
Confidence 36788888888 8886543 479999999998 8888764 6788999999999884
No 178
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=93.19 E-value=0.41 Score=47.89 Aligned_cols=101 Identities=12% Similarity=-0.021 Sum_probs=71.1
Q ss_pred CccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEEEcCchH-----HHHhcCCCCeEecCCCChHHHHHHHHHHhhcC
Q 038430 45 GKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTTRNEL-----VARMMGSTNIIFIEQLTEEECWSLFKRLAFFG 119 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiTTR~~~-----v~~~~~~~~~~~v~~L~~~ea~~LF~~~af~~ 119 (677)
+++.+||+||++......+..+...+.....+.++|+||.... +..++ ..+++++++.++..+++...+...
T Consensus 109 ~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~---~~~~~~~l~~~~~~~~l~~~~~~~ 185 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRC---AIFRFRPLRDEDIAKRLRYIAENE 185 (327)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTE---EEEECCCCCHHHHHHHHHHHHHTT
T ss_pred CCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhC---cEEEecCCCHHHHHHHHHHHHHhc
Confidence 5688999999987765666777777766666788998887642 22332 378999999999999998876432
Q ss_pred CCCCCCcchhHHHHHHHHHhcCCchHHHHHHHH
Q 038430 120 CSFEDCERLEPIGQKIARKCKGLPIAAKVIGNL 152 (677)
Q Consensus 120 ~~~~~~~~~~~~~~~i~~~c~GlPLal~~ig~~ 152 (677)
.. .--.+....++..++|.|-.+..+-..
T Consensus 186 ~~----~~~~~~~~~l~~~~~g~~r~~~~~l~~ 214 (327)
T 1iqp_A 186 GL----ELTEEGLQAILYIAEGDMRRAINILQA 214 (327)
T ss_dssp TC----EECHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CC----CCCHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 21 112345677889999999876554433
No 179
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=91.22 E-value=0.91 Score=46.33 Aligned_cols=102 Identities=13% Similarity=0.108 Sum_probs=69.0
Q ss_pred CccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEEEcCchH-HHHhc-CCCCeEecCCCChHHHHHHHHHHhhcCCCC
Q 038430 45 GKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTTRNEL-VARMM-GSTNIIFIEQLTEEECWSLFKRLAFFGCSF 122 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiTTR~~~-v~~~~-~~~~~~~v~~L~~~ea~~LF~~~af~~~~~ 122 (677)
+++.+||+||+...+......+...+.....+..+|++|.... +.... .....+++++++.++..+++...+-....
T Consensus 118 ~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~- 196 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI- 196 (373)
T ss_dssp SSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC-
T ss_pred CCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCC-
Confidence 5678999999987655566777777766555677777776432 11111 12357999999999999998876532111
Q ss_pred CCCcchhHHHHHHHHHhcCCchHHHHHH
Q 038430 123 EDCERLEPIGQKIARKCKGLPIAAKVIG 150 (677)
Q Consensus 123 ~~~~~~~~~~~~i~~~c~GlPLal~~ig 150 (677)
. --.+....+++.++|.|..+..+.
T Consensus 197 ~---~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 197 A---HEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp C---BCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred C---CCHHHHHHHHHHCCCCHHHHHHHH
Confidence 1 123446778999999999876554
No 180
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=90.90 E-value=0.033 Score=51.29 Aligned_cols=14 Identities=21% Similarity=0.301 Sum_probs=6.8
Q ss_pred CCcCEEEecCcccc
Q 038430 354 MHLKYLNLSELHIE 367 (677)
Q Consensus 354 ~~L~~L~Ls~~~i~ 367 (677)
+.|+.|+|++|.|.
T Consensus 98 ~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 98 PSLRVLNVESNFLT 111 (197)
T ss_dssp SSCCEEECCSSBCC
T ss_pred CccCeEecCCCcCC
Confidence 44555555555443
No 181
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=89.01 E-value=2.4 Score=41.86 Aligned_cols=102 Identities=6% Similarity=-0.078 Sum_probs=68.2
Q ss_pred CccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEEEcCchH-HHHhc-CCCCeEecCCCChHHHHHHHHHHhhcCCCC
Q 038430 45 GKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTTRNEL-VARMM-GSTNIIFIEQLTEEECWSLFKRLAFFGCSF 122 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiTTR~~~-v~~~~-~~~~~~~v~~L~~~ea~~LF~~~af~~~~~ 122 (677)
+++-+||+|++..........+...+.....+.++|+||.... +.... .....+++++++.++..+++...+-....
T Consensus 101 ~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~- 179 (319)
T 2chq_A 101 APFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGV- 179 (319)
T ss_dssp CCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEECCCCCHHHHHHHHHHHHHTTCC-
T ss_pred CCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEecCCCHHHHHHHHHHHHHHcCC-
Confidence 5688999999987655556667777766556778888876543 11111 11348999999999999998876633221
Q ss_pred CCCcchhHHHHHHHHHhcCCchHHHHHH
Q 038430 123 EDCERLEPIGQKIARKCKGLPIAAKVIG 150 (677)
Q Consensus 123 ~~~~~~~~~~~~i~~~c~GlPLal~~ig 150 (677)
. --.+....++..++|.+-.+..+-
T Consensus 180 ~---i~~~~l~~l~~~~~G~~r~~~~~l 204 (319)
T 2chq_A 180 K---ITEDGLEALIYISGGDFRKAINAL 204 (319)
T ss_dssp C---BCHHHHHHHHHTTTTCHHHHHHHH
T ss_pred C---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 1 123456778888999887655433
No 182
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=88.71 E-value=0.16 Score=46.66 Aligned_cols=66 Identities=14% Similarity=0.167 Sum_probs=31.0
Q ss_pred cCCCcccEEEeCCC-CCCCCCCccCCcccCCCCCcCEEEecCcccc-----ccchhhccCCCcCEEEecCCC
Q 038430 323 HGLNRLRTLLIDDE-SPPNSSLDKIPENVGKLMHLKYLNLSELHIE-----RLPKTLCELYNLQKLDIRGCR 388 (677)
Q Consensus 323 ~~l~~L~~L~l~~~-~l~~~~~~~lp~~~~~l~~L~~L~Ls~~~i~-----~lp~~i~~l~~L~~L~L~~~~ 388 (677)
..-+.|+.|+++++ .+.......+-+.+..-..|+.|+|++|.|. .+...+..-+.|++|+|++|.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~ 109 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF 109 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc
Confidence 33455666666541 1111111122233444456666666666654 233334444556666666555
No 183
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=88.23 E-value=0.66 Score=43.84 Aligned_cols=100 Identities=11% Similarity=0.043 Sum_probs=60.6
Q ss_pred ccEEEEEECCcCCCccc--hhhhhhhhcCC-CCC-cEEEEEcCc---------hHHHHhcCCCCeEecCCCChHHHHHHH
Q 038430 46 KKNFLILNDVWDGDYNK--WAPFFLCLNHG-LHG-SKILVTTRN---------ELVARMMGSTNIIFIEQLTEEECWSLF 112 (677)
Q Consensus 46 kr~LlVlDdvw~~~~~~--~~~l~~~~~~~-~~g-S~IiiTTR~---------~~v~~~~~~~~~~~v~~L~~~ea~~LF 112 (677)
++-+||+||++...... ...+...+... ..| .+||+||+. ..+..++.....+++++++.++..+++
T Consensus 104 ~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l 183 (242)
T 3bos_A 104 QFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAAL 183 (242)
T ss_dssp GSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHH
T ss_pred CCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHH
Confidence 45689999997653222 33344433221 122 247777762 333333332358999999999999999
Q ss_pred HHHhhcCCCCCCCcchhHHHHHHHHHhcCCchHHHHH
Q 038430 113 KRLAFFGCSFEDCERLEPIGQKIARKCKGLPIAAKVI 149 (677)
Q Consensus 113 ~~~af~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~i 149 (677)
...+-.... .--.+....+++.++|.+-.+..+
T Consensus 184 ~~~~~~~~~----~~~~~~~~~l~~~~~g~~r~l~~~ 216 (242)
T 3bos_A 184 QRRAAMRGL----QLPEDVGRFLLNRMARDLRTLFDV 216 (242)
T ss_dssp HHHHHHTTC----CCCHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHcCC----CCCHHHHHHHHHHccCCHHHHHHH
Confidence 887643221 112345677888899988766543
No 184
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=85.39 E-value=2.4 Score=44.52 Aligned_cols=119 Identities=15% Similarity=0.070 Sum_probs=71.6
Q ss_pred ccEEEEEECCcCCCc--cchhhhhhhhcC-CCCCcEEEEEcCc---------hHHHHhcCCCCeEecCCCChHHHHHHHH
Q 038430 46 KKNFLILNDVWDGDY--NKWAPFFLCLNH-GLHGSKILVTTRN---------ELVARMMGSTNIIFIEQLTEEECWSLFK 113 (677)
Q Consensus 46 kr~LlVlDdvw~~~~--~~~~~l~~~~~~-~~~gS~IiiTTR~---------~~v~~~~~~~~~~~v~~L~~~ea~~LF~ 113 (677)
+.-+|++||++.... ...+.+...+.. ...|..||+||.. ..+..++....++.+++++.++-.+++.
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~ 273 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIAR 273 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHH
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHH
Confidence 567899999976532 122333333322 2347789998875 3455555545689999999999999998
Q ss_pred HHhhcCCCCCCCcchhHHHHHHHHHhcCCchHHHHHHHH------hccC-CCHHHHHHHHhh
Q 038430 114 RLAFFGCSFEDCERLEPIGQKIARKCKGLPIAAKVIGNL------LRSK-STIKDWQRILDS 168 (677)
Q Consensus 114 ~~af~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~ig~~------L~~~-~~~~~w~~~l~~ 168 (677)
+.+-.... ..++ ++...++..+.|.+-.+..+-.. ..++ -+.+.++.+++.
T Consensus 274 ~~~~~~~~-~i~~---e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~~~It~~~~~~~l~~ 331 (440)
T 2z4s_A 274 KMLEIEHG-ELPE---EVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLKEAILLLKD 331 (440)
T ss_dssp HHHHHHTC-CCCT---THHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHTST
T ss_pred HHHHHcCC-CCCH---HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 87642211 1112 34567888888887655432211 1122 355666666653
No 185
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=83.54 E-value=12 Score=37.11 Aligned_cols=109 Identities=7% Similarity=-0.000 Sum_probs=60.6
Q ss_pred EEecCCCCHHHHHHHHHHHhcCCCCCCc-hHHHHHHHHHHHc---CCccEEEEEECCcCCCccchhhhhhhhc----CCC
Q 038430 3 VCVSDTFEEISVANAIIEGLGESTSSLS-EFQSLMSHIHRSI---EGKKNFLILNDVWDGDYNKWAPFFLCLN----HGL 74 (677)
Q Consensus 3 V~vs~~~~~~~i~~~i~~~l~~~~~~~~-~~~~~~~~i~~~L---~~kr~LlVlDdvw~~~~~~~~~l~~~~~----~~~ 74 (677)
|+.....+...++..|++++.+...... ..+.+...+ +.+ ++++++||||.++... .-+.+...+. ...
T Consensus 86 INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f-~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s 162 (318)
T 3te6_A 86 IDALELAGMDALYEKIWFAISKENLCGDISLEALNFYI-TNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNS 162 (318)
T ss_dssp EETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHH-HHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSC
T ss_pred EeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHH-HHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccccCC
Confidence 3334556778899999999976542222 233333333 333 4678999999997753 2233333332 112
Q ss_pred CCcEEEEEcCch----H-H----HHhcCCCCeEecCCCChHHHHHHHHHHh
Q 038430 75 HGSKILVTTRNE----L-V----ARMMGSTNIIFIEQLTEEECWSLFKRLA 116 (677)
Q Consensus 75 ~gS~IiiTTR~~----~-v----~~~~~~~~~~~v~~L~~~ea~~LF~~~a 116 (677)
+.+ ||.++.+. . + ..+++ ...+..++++.++-.+++...+
T Consensus 163 ~~~-vI~i~n~~d~~~~~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl 211 (318)
T 3te6_A 163 KLS-IICVGGHNVTIREQINIMPSLKAH-FTEIKLNKVDKNELQQMIITRL 211 (318)
T ss_dssp CEE-EEEECCSSCCCHHHHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHH
T ss_pred cEE-EEEEecCcccchhhcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHH
Confidence 222 33333222 1 1 22332 2368999999999999988865
No 186
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=82.68 E-value=6.5 Score=39.34 Aligned_cols=95 Identities=13% Similarity=0.070 Sum_probs=66.0
Q ss_pred CccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEEEcCchH-HHHhc-CCCCeEecCCCChHHHHHHHHHHhhcCCCC
Q 038430 45 GKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTTRNEL-VARMM-GSTNIIFIEQLTEEECWSLFKRLAFFGCSF 122 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiTTR~~~-v~~~~-~~~~~~~v~~L~~~ea~~LF~~~af~~~~~ 122 (677)
+++-++|+|+++..+......+...+..-..+..+|++|.+.+ +.... .-...+++++++.++..+.+...+ .
T Consensus 107 ~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~----~- 181 (334)
T 1a5t_A 107 GGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV----T- 181 (334)
T ss_dssp SSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC----C-
T ss_pred CCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc----C-
Confidence 4677899999987765566677777776656677777776542 33322 124589999999999998887764 1
Q ss_pred CCCcchhHHHHHHHHHhcCCchHHHH
Q 038430 123 EDCERLEPIGQKIARKCKGLPIAAKV 148 (677)
Q Consensus 123 ~~~~~~~~~~~~i~~~c~GlPLal~~ 148 (677)
--.+....++..++|.|..+..
T Consensus 182 ----~~~~~~~~l~~~s~G~~r~a~~ 203 (334)
T 1a5t_A 182 ----MSQDALLAALRLSAGSPGAALA 203 (334)
T ss_dssp ----CCHHHHHHHHHHTTTCHHHHHH
T ss_pred ----CCHHHHHHHHHHcCCCHHHHHH
Confidence 1123456788999999976654
No 187
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=82.60 E-value=3.6 Score=41.49 Aligned_cols=102 Identities=9% Similarity=0.039 Sum_probs=65.1
Q ss_pred ccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEEEcCch-HHHHhc-CCCCeEecCCCChHHHHHHHHHHhhcCCCCC
Q 038430 46 KKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTTRNE-LVARMM-GSTNIIFIEQLTEEECWSLFKRLAFFGCSFE 123 (677)
Q Consensus 46 kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiTTR~~-~v~~~~-~~~~~~~v~~L~~~ea~~LF~~~af~~~~~~ 123 (677)
++-++|+|++...+......+...+.....+.++|++|.+. .+.... .-...+++++++.++..+.+...+-.... .
T Consensus 134 ~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~-~ 212 (354)
T 1sxj_E 134 RYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERI-Q 212 (354)
T ss_dssp CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC-E
T ss_pred CCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCC-C
Confidence 55599999998765555566776666544567787777653 222211 11357999999999999998887632211 1
Q ss_pred CCcchhHHHHHHHHHhcCCchHHHHHH
Q 038430 124 DCERLEPIGQKIARKCKGLPIAAKVIG 150 (677)
Q Consensus 124 ~~~~~~~~~~~i~~~c~GlPLal~~ig 150 (677)
.+ -.+....+++.++|.+-.+..+-
T Consensus 213 ~~--~~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 213 LE--TKDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp EC--CSHHHHHHHHHHTTCHHHHHHHH
T ss_pred CC--cHHHHHHHHHHcCCCHHHHHHHH
Confidence 10 02456778888888876654433
No 188
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=74.67 E-value=22 Score=35.33 Aligned_cols=115 Identities=8% Similarity=-0.052 Sum_probs=75.5
Q ss_pred chHHHHHHHHHHH-cCCccEEEEEECCcC-CCccchhhhhhhhcCCCCCcEEEEEcCc-------hHHHHhcCC-CCeEe
Q 038430 30 SEFQSLMSHIHRS-IEGKKNFLILNDVWD-GDYNKWAPFFLCLNHGLHGSKILVTTRN-------ELVARMMGS-TNIIF 99 (677)
Q Consensus 30 ~~~~~~~~~i~~~-L~~kr~LlVlDdvw~-~~~~~~~~l~~~~~~~~~gS~IiiTTR~-------~~v~~~~~~-~~~~~ 99 (677)
.+..++...+... +-+++-++|+|++.. .+...+..+...+..-..++.+|++|-. ..+...+.. ...++
T Consensus 59 ~~~~~l~~~~~~~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~ 138 (343)
T 1jr3_D 59 TDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVT 138 (343)
T ss_dssp CCHHHHHHHHHHHHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEE
T ss_pred CCHHHHHHHhcCcCCccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEE
Confidence 4566665555433 456777889999976 4446677788888766667777777643 345555432 45899
Q ss_pred cCCCChHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHhcCCchHHHH
Q 038430 100 IEQLTEEECWSLFKRLAFFGCSFEDCERLEPIGQKIARKCKGLPIAAKV 148 (677)
Q Consensus 100 v~~L~~~ea~~LF~~~af~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~ 148 (677)
..+++.++-.+.....+-.... .--.+....+++.++|-..++..
T Consensus 139 ~~~l~~~~l~~~l~~~~~~~g~----~i~~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 139 CQTPEQAQLPRWVAARAKQLNL----ELDDAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp ECCCCTTHHHHHHHHHHHHTTC----EECHHHHHHHHHSSTTCHHHHHH
T ss_pred eeCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHhchHHHHHHH
Confidence 9999998888777765532211 12234567788888988777654
No 189
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=72.69 E-value=17 Score=36.19 Aligned_cols=98 Identities=6% Similarity=-0.041 Sum_probs=64.7
Q ss_pred CccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEEEcCch-----HHHHhcCCCCeEecCCCChHHHHHHHHHHhhcC
Q 038430 45 GKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTTRNE-----LVARMMGSTNIIFIEQLTEEECWSLFKRLAFFG 119 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiTTR~~-----~v~~~~~~~~~~~v~~L~~~ea~~LF~~~af~~ 119 (677)
.++-+|++|++..........+...+.......++|++|... .+..++ ..+++++++.++..+.+...+-..
T Consensus 132 ~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~---~~i~~~~~~~~~~~~~l~~~~~~~ 208 (353)
T 1sxj_D 132 PPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQC---SKFRFKALDASNAIDRLRFISEQE 208 (353)
T ss_dssp CSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHS---EEEECCCCCHHHHHHHHHHHHHTT
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccC---ceEEeCCCCHHHHHHHHHHHHHHh
Confidence 345699999997765445566666666554556777776433 223332 378999999999999888765322
Q ss_pred CCCCCCcchhHHHHHHHHHhcCCchHHHHH
Q 038430 120 CSFEDCERLEPIGQKIARKCKGLPIAAKVI 149 (677)
Q Consensus 120 ~~~~~~~~~~~~~~~i~~~c~GlPLal~~i 149 (677)
.. . --.+....+++.++|.|-.+..+
T Consensus 209 ~~-~---i~~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 209 NV-K---CDDGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp TC-C---CCHHHHHHHHHHTSSCHHHHHHH
T ss_pred CC-C---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 11 1 12355778999999998865543
No 190
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=70.67 E-value=3.9 Score=40.73 Aligned_cols=92 Identities=14% Similarity=0.066 Sum_probs=55.0
Q ss_pred cEEEEEECCcCCCc--cchhhhhhhhcC-CCCCcEEEEEcCc---------hHHHHhcCCCCeEecCCCChHHHHHHHHH
Q 038430 47 KNFLILNDVWDGDY--NKWAPFFLCLNH-GLHGSKILVTTRN---------ELVARMMGSTNIIFIEQLTEEECWSLFKR 114 (677)
Q Consensus 47 r~LlVlDdvw~~~~--~~~~~l~~~~~~-~~~gS~IiiTTR~---------~~v~~~~~~~~~~~v~~L~~~ea~~LF~~ 114 (677)
.-+|++||+..... .....+...+.. ...|.+||+||.. ..+..++....++++++ +.++-.+++..
T Consensus 99 ~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~ 177 (324)
T 1l8q_A 99 VDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKE 177 (324)
T ss_dssp CSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHH
T ss_pred CCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHH
Confidence 56899999966432 122233333321 1235678888752 34444554446799999 99999999988
Q ss_pred HhhcCCCCCCCcchhHHHHHHHHHhcCCch
Q 038430 115 LAFFGCSFEDCERLEPIGQKIARKCKGLPI 144 (677)
Q Consensus 115 ~af~~~~~~~~~~~~~~~~~i~~~c~GlPL 144 (677)
.+..... .. -.+....+++++ |..-
T Consensus 178 ~~~~~~~-~l---~~~~l~~l~~~~-g~~r 202 (324)
T 1l8q_A 178 KLKEFNL-EL---RKEVIDYLLENT-KNVR 202 (324)
T ss_dssp HHHHTTC-CC---CHHHHHHHHHHC-SSHH
T ss_pred HHHhcCC-CC---CHHHHHHHHHhC-CCHH
Confidence 7743222 11 134456677777 6544
No 191
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=63.79 E-value=53 Score=31.20 Aligned_cols=116 Identities=16% Similarity=0.186 Sum_probs=60.2
Q ss_pred HcCCccEEEEEECCcCC------C---ccch-hhhhhhhcC---CCCCcEEEEEcCchHHHHhcC---C-CCeEecCCCC
Q 038430 42 SIEGKKNFLILNDVWDG------D---YNKW-APFFLCLNH---GLHGSKILVTTRNELVARMMG---S-TNIIFIEQLT 104 (677)
Q Consensus 42 ~L~~kr~LlVlDdvw~~------~---~~~~-~~l~~~~~~---~~~gS~IiiTTR~~~v~~~~~---~-~~~~~v~~L~ 104 (677)
....+..+|++|++... . ...+ ..+...+.. .+....||.||.......... . ...+++++++
T Consensus 120 ~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~ 199 (272)
T 1d2n_A 120 AYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIA 199 (272)
T ss_dssp HHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEE
T ss_pred HHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcCCCcc
Confidence 33467889999999542 1 1111 223333322 223445777887776555421 1 3478899998
Q ss_pred h-HHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHhcC------CchHHHHHHHHhccCCCHHHHHHHHh
Q 038430 105 E-EECWSLFKRLAFFGCSFEDCERLEPIGQKIARKCKG------LPIAAKVIGNLLRSKSTIKDWQRILD 167 (677)
Q Consensus 105 ~-~ea~~LF~~~af~~~~~~~~~~~~~~~~~i~~~c~G------lPLal~~ig~~L~~~~~~~~w~~~l~ 167 (677)
. ++-.+++.... .. -.+....+++.+.| +.-++..+-.+-. ......++.+++
T Consensus 200 ~r~~i~~i~~~~~----~~-----~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~-~~~~~~~~~~~~ 259 (272)
T 1d2n_A 200 TGEQLLEALELLG----NF-----KDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQ-MDPEYRVRKFLA 259 (272)
T ss_dssp EHHHHHHHHHHHT----CS-----CHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTT-SCGGGHHHHHHH
T ss_pred HHHHHHHHHHhcC----CC-----CHHHHHHHHHHhcCCCccccHHHHHHHHHHHhh-hchHHHHHHHHH
Confidence 8 55555554421 11 12345677778777 4444444433322 223344555554
No 192
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=62.29 E-value=34 Score=33.54 Aligned_cols=132 Identities=10% Similarity=0.083 Sum_probs=70.0
Q ss_pred CHHHHHHHHHHHhcCCC----CCCchHHHHHHHHHHHcC-----CccEEEEEECCcCCC-ccchhhhhhhhcCCCCCcEE
Q 038430 10 EEISVANAIIEGLGEST----SSLSEFQSLMSHIHRSIE-----GKKNFLILNDVWDGD-YNKWAPFFLCLNHGLHGSKI 79 (677)
Q Consensus 10 ~~~~i~~~i~~~l~~~~----~~~~~~~~~~~~i~~~L~-----~kr~LlVlDdvw~~~-~~~~~~l~~~~~~~~~gS~I 79 (677)
.-..+.+.+++.++... ......+.....+.+... +++-+||+|++.... ......+...+.....+.++
T Consensus 60 GKT~la~~la~~l~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~i 139 (324)
T 3u61_B 60 GKTTVAKALCHDVNADMMFVNGSDCKIDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSI 139 (324)
T ss_dssp SHHHHHHHHHHHTTEEEEEEETTTCCHHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEE
T ss_pred CHHHHHHHHHHHhCCCEEEEcccccCHHHHHHHHHHHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEE
Confidence 33455666666664321 111123333333333222 367899999997764 34455555555543445678
Q ss_pred EEEcCchH-----HHHhcCCCCeEecCCCChHHHHHH-------HHHHhhcCCCCCCCcchhHHHHHHHHHhcCCchHHH
Q 038430 80 LVTTRNEL-----VARMMGSTNIIFIEQLTEEECWSL-------FKRLAFFGCSFEDCERLEPIGQKIARKCKGLPIAAK 147 (677)
Q Consensus 80 iiTTR~~~-----v~~~~~~~~~~~v~~L~~~ea~~L-------F~~~af~~~~~~~~~~~~~~~~~i~~~c~GlPLal~ 147 (677)
|+||.... +..++ ..+++++++.++-.++ +...+-. .....++ .+....+++.++|-+-.+.
T Consensus 140 I~~~n~~~~l~~~l~sR~---~~i~~~~~~~~e~~~il~~~~~~l~~~~~~-~~~~~~~--~~~~~~l~~~~~gd~R~a~ 213 (324)
T 3u61_B 140 IITANNIDGIIKPLQSRC---RVITFGQPTDEDKIEMMKQMIRRLTEICKH-EGIAIAD--MKVVAALVKKNFPDFRKTI 213 (324)
T ss_dssp EEEESSGGGSCTTHHHHS---EEEECCCCCHHHHHHHHHHHHHHHHHHHHH-HTCCBSC--HHHHHHHHHHTCSCTTHHH
T ss_pred EEEeCCccccCHHHHhhC---cEEEeCCCCHHHHHHHHHHHHHHHHHHHHH-cCCCCCc--HHHHHHHHHhCCCCHHHHH
Confidence 88886543 33332 3799999998874333 2222211 1111101 2556778888887665443
No 193
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=62.06 E-value=39 Score=32.30 Aligned_cols=99 Identities=14% Similarity=0.067 Sum_probs=54.2
Q ss_pred CCccEEEEEECCcCC-----------Cccchhhhhh---hhc--CCCCCcEEEEEcCchHH-----HHhcCCCCeEecCC
Q 038430 44 EGKKNFLILNDVWDG-----------DYNKWAPFFL---CLN--HGLHGSKILVTTRNELV-----ARMMGSTNIIFIEQ 102 (677)
Q Consensus 44 ~~kr~LlVlDdvw~~-----------~~~~~~~l~~---~~~--~~~~gS~IiiTTR~~~v-----~~~~~~~~~~~v~~ 102 (677)
..+..+|++|++... .......+.. .+. ....+..||.||..... .........+.++.
T Consensus 108 ~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~ 187 (285)
T 3h4m_A 108 EKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPA 187 (285)
T ss_dssp HTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCC
T ss_pred HcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECC
Confidence 356689999999542 1111122222 222 12345678888874422 21101234799999
Q ss_pred CChHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHhcC-CchHHH
Q 038430 103 LTEEECWSLFKRLAFFGCSFEDCERLEPIGQKIARKCKG-LPIAAK 147 (677)
Q Consensus 103 L~~~ea~~LF~~~af~~~~~~~~~~~~~~~~~i~~~c~G-lPLal~ 147 (677)
.+.++-.++|...+..... ..... ...++..+.| .|-.|.
T Consensus 188 p~~~~r~~il~~~~~~~~~-~~~~~----~~~l~~~~~g~~~~~i~ 228 (285)
T 3h4m_A 188 PDEKGRLEILKIHTRKMNL-AEDVN----LEEIAKMTEGCVGAELK 228 (285)
T ss_dssp CCHHHHHHHHHHHHTTSCB-CTTCC----HHHHHHHCTTCCHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCC-CCcCC----HHHHHHHcCCCCHHHHH
Confidence 9999999999887643222 11122 3556666666 343444
No 194
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=61.94 E-value=13 Score=39.60 Aligned_cols=101 Identities=8% Similarity=0.020 Sum_probs=59.1
Q ss_pred CccEEEEEECCcCCCcc---chhhhhhhhcCCCCCcEEEEEcCchH---HHHhcCCCCeEecCCCChHHHHHHHHHHhhc
Q 038430 45 GKKNFLILNDVWDGDYN---KWAPFFLCLNHGLHGSKILVTTRNEL---VARMMGSTNIIFIEQLTEEECWSLFKRLAFF 118 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~~~---~~~~l~~~~~~~~~gS~IiiTTR~~~---v~~~~~~~~~~~v~~L~~~ea~~LF~~~af~ 118 (677)
.++.+||+|+|...... .+..+...+... +..||+++.+.. +.........+++++++.++..+.+...+..
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~ 224 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIR 224 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHH
Confidence 56789999999764322 224454444443 233555554322 2111122447899999999999998887653
Q ss_pred CCCCCCCcchhHHHHHHHHHhcC-CchHHHHHHH
Q 038430 119 GCSFEDCERLEPIGQKIARKCKG-LPIAAKVIGN 151 (677)
Q Consensus 119 ~~~~~~~~~~~~~~~~i~~~c~G-lPLal~~ig~ 151 (677)
.... ..+ +....|++.++| ++-|+..+..
T Consensus 225 ~~~~-i~~---~~l~~la~~s~GdiR~~i~~L~~ 254 (516)
T 1sxj_A 225 EKFK-LDP---NVIDRLIQTTRGDIRQVINLLST 254 (516)
T ss_dssp HTCC-CCT---THHHHHHHHTTTCHHHHHHHHTH
T ss_pred cCCC-CCH---HHHHHHHHHcCCcHHHHHHHHHH
Confidence 2221 112 346678888998 5555655543
No 195
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=58.95 E-value=27 Score=36.39 Aligned_cols=104 Identities=15% Similarity=0.161 Sum_probs=58.2
Q ss_pred CCccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEEEcCchH--HHHh-cCCCCeEecCCCChHHHHHHHHHHhhcCC
Q 038430 44 EGKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTTRNEL--VARM-MGSTNIIFIEQLTEEECWSLFKRLAFFGC 120 (677)
Q Consensus 44 ~~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiTTR~~~--v~~~-~~~~~~~~v~~L~~~ea~~LF~~~af~~~ 120 (677)
.+++.+|++|+|...+......+...+... .-.-|..||.+.. +... ..-..++.+++++.++-.+++...+-...
T Consensus 104 ~~~~~iLfIDEI~~l~~~~q~~LL~~le~~-~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~~~ 182 (447)
T 3pvs_A 104 AGRRTILFVDEVHRFNKSQQDAFLPHIEDG-TITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKT 182 (447)
T ss_dssp TTCCEEEEEETTTCC------CCHHHHHTT-SCEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCTT
T ss_pred cCCCcEEEEeChhhhCHHHHHHHHHHHhcC-ceEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHHHh
Confidence 467889999999876555566666666652 2222333555432 1111 11233789999999999999888653311
Q ss_pred CC---CCCcchhHHHHHHHHHhcCCchHHHH
Q 038430 121 SF---EDCERLEPIGQKIARKCKGLPIAAKV 148 (677)
Q Consensus 121 ~~---~~~~~~~~~~~~i~~~c~GlPLal~~ 148 (677)
.. ....--.+....++.+++|.+-.+..
T Consensus 183 ~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln 213 (447)
T 3pvs_A 183 RGYGGQDIVLPDETRRAIAELVNGDARRALN 213 (447)
T ss_dssp TSSTTSSEECCHHHHHHHHHHHCSCHHHHHH
T ss_pred hhhccccCcCCHHHHHHHHHHCCCCHHHHHH
Confidence 10 11112234566788888887765543
No 196
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=58.19 E-value=1.4e+02 Score=29.25 Aligned_cols=100 Identities=10% Similarity=0.055 Sum_probs=62.3
Q ss_pred CccEEEEEECCcCCCccchhhhhhhhcCCC------------------CCcEEEEEcCch-----HHHHhcCCCCeEecC
Q 038430 45 GKKNFLILNDVWDGDYNKWAPFFLCLNHGL------------------HGSKILVTTRNE-----LVARMMGSTNIIFIE 101 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~------------------~gS~IiiTTR~~-----~v~~~~~~~~~~~v~ 101 (677)
.+.-.|++|++..........+...+.... ++-++|.+|... .+..++ ...+.++
T Consensus 105 ~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~--~~~i~l~ 182 (338)
T 3pfi_A 105 SEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRF--GMQFRLE 182 (338)
T ss_dssp CTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTTC--SEEEECC
T ss_pred cCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhhc--CEEeeCC
Confidence 456789999998765444555555554431 123566555542 233332 3589999
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHhcCCchHHHHHH
Q 038430 102 QLTEEECWSLFKRLAFFGCSFEDCERLEPIGQKIARKCKGLPIAAKVIG 150 (677)
Q Consensus 102 ~L~~~ea~~LF~~~af~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~ig 150 (677)
+++.++..+++...+-.... .--.+....++..+.|.|-.+..+.
T Consensus 183 ~~~~~e~~~il~~~~~~~~~----~~~~~~~~~l~~~~~G~~r~l~~~l 227 (338)
T 3pfi_A 183 FYKDSELALILQKAALKLNK----TCEEKAALEIAKRSRSTPRIALRLL 227 (338)
T ss_dssp CCCHHHHHHHHHHHHHHTTC----EECHHHHHHHHHTTTTCHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHCcCHHHHHHHH
Confidence 99999999999887633221 1223456778888999986555433
No 197
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=53.89 E-value=18 Score=32.82 Aligned_cols=69 Identities=13% Similarity=0.174 Sum_probs=42.3
Q ss_pred HHHHHHHHHHcCCccE-EEEEECCcC---CCccchhhhhhhhcCCCCCcEEEEEcCch--HHHHhcCCCCeEecCCC
Q 038430 33 QSLMSHIHRSIEGKKN-FLILNDVWD---GDYNKWAPFFLCLNHGLHGSKILVTTRNE--LVARMMGSTNIIFIEQL 103 (677)
Q Consensus 33 ~~~~~~i~~~L~~kr~-LlVlDdvw~---~~~~~~~~l~~~~~~~~~gS~IiiTTR~~--~v~~~~~~~~~~~v~~L 103 (677)
...-..+++.+.+.+| |||||.+-. ......+.+...+.......-||+|+|.. .+... ++.+-+|...
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~--AD~VTem~~v 180 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDL--ADTVSELRPV 180 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHH--CSEEEECCCS
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHHh--Ccceeeecce
Confidence 3345666777777766 999999922 12244555666666555566799999976 33333 2335555543
No 198
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=52.67 E-value=60 Score=30.38 Aligned_cols=102 Identities=11% Similarity=0.053 Sum_probs=54.6
Q ss_pred CccEEEEEECCcCCC------------ccch---hhhhhhhcC--CCCCcEEEEEcCchHHHHh-c----CCCCeEecCC
Q 038430 45 GKKNFLILNDVWDGD------------YNKW---APFFLCLNH--GLHGSKILVTTRNELVARM-M----GSTNIIFIEQ 102 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~------------~~~~---~~l~~~~~~--~~~gS~IiiTTR~~~v~~~-~----~~~~~~~v~~ 102 (677)
....+|++|+++... .... ..+...+.. ...+..||.||........ . -....+.++.
T Consensus 97 ~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~ 176 (262)
T 2qz4_A 97 RAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDL 176 (262)
T ss_dssp TCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCS
T ss_pred cCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCC
Confidence 457899999996531 1111 122222222 1235567777755432221 1 1235788999
Q ss_pred CChHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHhcCCch-HHHHH
Q 038430 103 LTEEECWSLFKRLAFFGCSFEDCERLEPIGQKIARKCKGLPI-AAKVI 149 (677)
Q Consensus 103 L~~~ea~~LF~~~af~~~~~~~~~~~~~~~~~i~~~c~GlPL-al~~i 149 (677)
.+.++-.+++...+-.... . .........++..+.|.+- .|..+
T Consensus 177 p~~~~r~~il~~~~~~~~~-~--~~~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 177 PTLQERREIFEQHLKSLKL-T--QSSTFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp CCHHHHHHHHHHHHHHTTC-C--BTHHHHHHHHHHTCTTCCHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCC-C--cchhhHHHHHHHHCCCCCHHHHHHH
Confidence 9999999999887643222 1 1222234678888888754 44433
No 199
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=51.17 E-value=56 Score=32.56 Aligned_cols=92 Identities=12% Similarity=0.021 Sum_probs=58.3
Q ss_pred EEEEEECCcCCCccchhhhhhhhcCCCCCcEEEEEcCc-----------------hHHHHhcCCCCeEecCCCChHHHHH
Q 038430 48 NFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTTRN-----------------ELVARMMGSTNIIFIEQLTEEECWS 110 (677)
Q Consensus 48 ~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiTTR~-----------------~~v~~~~~~~~~~~v~~L~~~ea~~ 110 (677)
.+|++|++..........+...+...... .++++|.. ..+..++ ..+.+++++.++..+
T Consensus 191 ~vl~IDEi~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~---~~i~~~~~~~~e~~~ 266 (368)
T 3uk6_A 191 GVLFIDEVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRL---LIVSTTPYSEKDTKQ 266 (368)
T ss_dssp CEEEEESGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTE---EEEEECCCCHHHHHH
T ss_pred ceEEEhhccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhc---cEEEecCCCHHHHHH
Confidence 48999999876555556666666554333 34444421 3444443 248999999999999
Q ss_pred HHHHHhhcCCCCCCCcchhHHHHHHHHHhc-CCchHHH
Q 038430 111 LFKRLAFFGCSFEDCERLEPIGQKIARKCK-GLPIAAK 147 (677)
Q Consensus 111 LF~~~af~~~~~~~~~~~~~~~~~i~~~c~-GlPLal~ 147 (677)
++...+-.... .--.+....+++++. |.|-.+.
T Consensus 267 il~~~~~~~~~----~~~~~~l~~l~~~~~~G~~r~~~ 300 (368)
T 3uk6_A 267 ILRIRCEEEDV----EMSEDAYTVLTRIGLETSLRYAI 300 (368)
T ss_dssp HHHHHHHHTTC----CBCHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHcCC----CCCHHHHHHHHHHhcCCCHHHHH
Confidence 99887643222 122345677888887 7665554
No 200
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=44.64 E-value=68 Score=30.98 Aligned_cols=69 Identities=6% Similarity=0.115 Sum_probs=47.3
Q ss_pred cEEEEEECCcCC---------CccchhhhhhhhcCCCCCcEEEEEcCchH----------HHHhcCCCCeEecCCCChHH
Q 038430 47 KNFLILNDVWDG---------DYNKWAPFFLCLNHGLHGSKILVTTRNEL----------VARMMGSTNIIFIEQLTEEE 107 (677)
Q Consensus 47 r~LlVlDdvw~~---------~~~~~~~l~~~~~~~~~gS~IiiTTR~~~----------v~~~~~~~~~~~v~~L~~~e 107 (677)
.-+|++|++... .......+...+.....+.+||.||.... +..++ ...+++++++.++
T Consensus 131 ~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~--~~~i~~~~~~~~~ 208 (309)
T 3syl_A 131 GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFRSRI--AHHIEFPDYSDEE 208 (309)
T ss_dssp TSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTHHHHE--EEEEEECCCCHHH
T ss_pred CCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHHHHhC--CeEEEcCCcCHHH
Confidence 458999999743 33344556666666555678888886432 23332 3589999999999
Q ss_pred HHHHHHHHhh
Q 038430 108 CWSLFKRLAF 117 (677)
Q Consensus 108 a~~LF~~~af 117 (677)
-.+++...+-
T Consensus 209 ~~~il~~~l~ 218 (309)
T 3syl_A 209 LFEIAGHMLD 218 (309)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 201
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=44.26 E-value=17 Score=35.67 Aligned_cols=71 Identities=15% Similarity=0.135 Sum_probs=53.7
Q ss_pred CccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEEEcCch-HHHHhcCCCCeEecCCCChHHHHHHHHHHh
Q 038430 45 GKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTTRNE-LVARMMGSTNIIFIEQLTEEECWSLFKRLA 116 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiTTR~~-~v~~~~~~~~~~~v~~L~~~ea~~LF~~~a 116 (677)
+++-++|+|++...+......+...+..-...+++|++|.+. .+...+..- .+++++++.++..+.+...+
T Consensus 81 ~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 81 YTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp SSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCCCHHHHHHHHHHH
T ss_pred CCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCCHHHHHHHHHHHh
Confidence 456789999998876667778888887766677777776544 444444445 89999999999999887765
No 202
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=40.97 E-value=2.5e+02 Score=27.77 Aligned_cols=100 Identities=13% Similarity=0.014 Sum_probs=56.0
Q ss_pred CccEEEEEECCcCCCcc-----------chhhhhhhhcC---CCCCcEEEEEcCch-----HHHHhcCCCCeEecCCCCh
Q 038430 45 GKKNFLILNDVWDGDYN-----------KWAPFFLCLNH---GLHGSKILVTTRNE-----LVARMMGSTNIIFIEQLTE 105 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~~~-----------~~~~l~~~~~~---~~~gS~IiiTTR~~-----~v~~~~~~~~~~~v~~L~~ 105 (677)
.+..+|+||++...... ....+...+.. ...+-.||.||... .+..+ ....+.++..+.
T Consensus 142 ~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~rR--f~~~i~i~~P~~ 219 (355)
T 2qp9_X 142 NKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRR--FERRIYIPLPDL 219 (355)
T ss_dssp TSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHHT--CCEEEECCCCCH
T ss_pred cCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHcc--cCEEEEeCCcCH
Confidence 56789999999753211 01222223321 12355566566533 33333 345788999999
Q ss_pred HHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHhcCC-chHHHHHH
Q 038430 106 EECWSLFKRLAFFGCSFEDCERLEPIGQKIARKCKGL-PIAAKVIG 150 (677)
Q Consensus 106 ~ea~~LF~~~af~~~~~~~~~~~~~~~~~i~~~c~Gl-PLal~~ig 150 (677)
++-.+++..++-.... .. -......+++.+.|. +-.|..+.
T Consensus 220 ~~r~~il~~~l~~~~~-~~---~~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 220 AARTTMFEINVGDTPS-VL---TKEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp HHHHHHHHHHHTTSCB-CC---CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCC-CC---CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 9999999887632211 11 123456788888884 44455443
No 203
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=39.16 E-value=39 Score=29.54 Aligned_cols=66 Identities=8% Similarity=0.056 Sum_probs=36.1
Q ss_pred CCccEEEEEECCcCCC--------ccchhhhhhhhcCCCCCcEEEEEcCchHHHHhc-------CCCCeEecCCCChHHH
Q 038430 44 EGKKNFLILNDVWDGD--------YNKWAPFFLCLNHGLHGSKILVTTRNELVARMM-------GSTNIIFIEQLTEEEC 108 (677)
Q Consensus 44 ~~kr~LlVlDdvw~~~--------~~~~~~l~~~~~~~~~gS~IiiTTR~~~v~~~~-------~~~~~~~v~~L~~~ea 108 (677)
.+++.+||+||+.... ......+...+.. + +-.+|.||......... .-...+.+++++.++.
T Consensus 113 ~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~-~-~~~~i~~~~~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~ 190 (195)
T 1jbk_A 113 QEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR-G-ELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDT 190 (195)
T ss_dssp STTTEEEEEETGGGGTT------CCCCHHHHHHHHHT-T-SCCEEEEECHHHHHHHTTTCHHHHTTEEEEECCCCCHHHH
T ss_pred cCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhcc-C-CeEEEEeCCHHHHHHHHhcCHHHHHHhceeecCCCCHHHH
Confidence 3568899999996542 1112333333332 2 34566666655432211 1112588888888876
Q ss_pred HHH
Q 038430 109 WSL 111 (677)
Q Consensus 109 ~~L 111 (677)
.++
T Consensus 191 ~~i 193 (195)
T 1jbk_A 191 IAI 193 (195)
T ss_dssp HTT
T ss_pred HHH
Confidence 654
No 204
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=38.99 E-value=2.8e+02 Score=26.86 Aligned_cols=100 Identities=12% Similarity=0.041 Sum_probs=57.2
Q ss_pred CccEEEEEECCcCCCcc-----------chhhhhhhhc---CCCCCcEEEEEcCch-----HHHHhcCCCCeEecCCCCh
Q 038430 45 GKKNFLILNDVWDGDYN-----------KWAPFFLCLN---HGLHGSKILVTTRNE-----LVARMMGSTNIIFIEQLTE 105 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~~~-----------~~~~l~~~~~---~~~~gS~IiiTTR~~-----~v~~~~~~~~~~~v~~L~~ 105 (677)
.+..+|++|++...... ....+...+. ....+..||.||... .+..++ ...+.++..+.
T Consensus 109 ~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~Rf--~~~i~~~~p~~ 186 (322)
T 3eie_A 109 NKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRF--ERRIYIPLPDL 186 (322)
T ss_dssp TSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHHHC--CEEEECCCCCH
T ss_pred cCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHccc--CeEEEeCCCCH
Confidence 46689999999643110 0122333332 223455666677653 233332 34788999999
Q ss_pred HHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHhcCC-chHHHHHH
Q 038430 106 EECWSLFKRLAFFGCSFEDCERLEPIGQKIARKCKGL-PIAAKVIG 150 (677)
Q Consensus 106 ~ea~~LF~~~af~~~~~~~~~~~~~~~~~i~~~c~Gl-PLal~~ig 150 (677)
++-.++|..++-...... -......+++.+.|. +-.|..+.
T Consensus 187 ~~r~~il~~~~~~~~~~~----~~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 187 AARTTMFEINVGDTPCVL----TKEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp HHHHHHHHHHHTTCCCCC----CHHHHHHHHHTTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCC----CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 999999998764322111 123456788888774 54554443
No 205
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=37.05 E-value=1.2e+02 Score=29.78 Aligned_cols=98 Identities=6% Similarity=-0.007 Sum_probs=59.3
Q ss_pred CccEEEEEECCcCCCccchhhhhhhhcCCCCCcEEEEEcCchH-HHHhc-CCCCeEecCCCChHHHHHHHHHHhhcCCCC
Q 038430 45 GKKNFLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTTRNEL-VARMM-GSTNIIFIEQLTEEECWSLFKRLAFFGCSF 122 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiTTR~~~-v~~~~-~~~~~~~v~~L~~~ea~~LF~~~af~~~~~ 122 (677)
+.+-++|+|++..........+...+.......++|++|.... +.... .-...+++.+++.++..+.+...+-. ...
T Consensus 109 ~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~~~~-~~~ 187 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLVH-EKL 187 (340)
T ss_dssp CSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHT-TTC
T ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEeccCCCHHHHHHHHHHHHHH-cCC
Confidence 3467899999976654555666666655445667777765432 11111 11237889999999888877765421 111
Q ss_pred CCCcchhHHHHHHHHHhcCCchHH
Q 038430 123 EDCERLEPIGQKIARKCKGLPIAA 146 (677)
Q Consensus 123 ~~~~~~~~~~~~i~~~c~GlPLal 146 (677)
. --.+....++..++|-+-.+
T Consensus 188 ~---i~~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 188 K---LSPNAEKALIELSNGDMRRV 208 (340)
T ss_dssp C---BCHHHHHHHHHHHTTCHHHH
T ss_pred C---CCHHHHHHHHHHcCCCHHHH
Confidence 1 11234667888888877643
No 206
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=30.68 E-value=19 Score=30.90 Aligned_cols=40 Identities=18% Similarity=0.198 Sum_probs=21.5
Q ss_pred ccEEEEEECCcCCCccchhhhhhhhcCC-CCCc-EEEEEcCc
Q 038430 46 KKNFLILNDVWDGDYNKWAPFFLCLNHG-LHGS-KILVTTRN 85 (677)
Q Consensus 46 kr~LlVlDdvw~~~~~~~~~l~~~~~~~-~~gS-~IiiTTR~ 85 (677)
+.-++|+||+.......-+.+...+... ..|. +||+||+.
T Consensus 83 ~~~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 83 EAEYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp GCSEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred CCCEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 3457899999665332323333333221 1233 58888873
No 207
>2vda_B Maltoporin; sugar transport, protein transport, protein targeting, transmembrane, outer membrane, signal peptide; NMR {Escherichia coli}
Probab=21.17 E-value=50 Score=18.35 Aligned_cols=17 Identities=24% Similarity=0.561 Sum_probs=13.9
Q ss_pred cCCchHHHHHHHHhccC
Q 038430 140 KGLPIAAKVIGNLLRSK 156 (677)
Q Consensus 140 ~GlPLal~~ig~~L~~~ 156 (677)
.-+|||+.++++.+...
T Consensus 9 rklplavav~agv~~aq 25 (28)
T 2vda_B 9 RKLPLAVAVAAGVMSAQ 25 (28)
T ss_dssp CCCTHHHHHHHHTTCCC
T ss_pred ccCchHHHHHHHHhHhh
Confidence 46899999999987654
No 208
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=20.57 E-value=5.4e+02 Score=25.20 Aligned_cols=100 Identities=8% Similarity=-0.017 Sum_probs=55.0
Q ss_pred CccEEEEEECCcCCCc-----------cchhhhhhhhcCC----CCCcEEEEEcCch-----HHHHhcCCCCeEecCCCC
Q 038430 45 GKKNFLILNDVWDGDY-----------NKWAPFFLCLNHG----LHGSKILVTTRNE-----LVARMMGSTNIIFIEQLT 104 (677)
Q Consensus 45 ~kr~LlVlDdvw~~~~-----------~~~~~l~~~~~~~----~~gS~IiiTTR~~-----~v~~~~~~~~~~~v~~L~ 104 (677)
.++.+|+||++..... .....+...+... ..+-.||.||... .+..+ ....+.++..+
T Consensus 175 ~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R--f~~~i~i~~p~ 252 (357)
T 3d8b_A 175 QQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRR--LVKRLYIPLPE 252 (357)
T ss_dssp TCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTT--CCEEEECCCCC
T ss_pred cCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhh--CceEEEeCCcC
Confidence 5678999999943210 0112233333321 2344555566532 22222 23478899999
Q ss_pred hHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHhcC-CchHHHHHH
Q 038430 105 EEECWSLFKRLAFFGCSFEDCERLEPIGQKIARKCKG-LPIAAKVIG 150 (677)
Q Consensus 105 ~~ea~~LF~~~af~~~~~~~~~~~~~~~~~i~~~c~G-lPLal~~ig 150 (677)
.++-.+++...+-.... . --.+....+++.+.| .+-+|..+.
T Consensus 253 ~~~r~~il~~~~~~~~~-~---l~~~~l~~la~~t~G~s~~dl~~l~ 295 (357)
T 3d8b_A 253 ASARKQIVINLMSKEQC-C---LSEEEIEQIVQQSDAFSGADMTQLC 295 (357)
T ss_dssp HHHHHHHHHHHHHTSCB-C---CCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCC-C---ccHHHHHHHHHHcCCCCHHHHHHHH
Confidence 99998888876632211 1 113456678888888 455565544
No 209
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=20.44 E-value=2e+02 Score=29.60 Aligned_cols=92 Identities=13% Similarity=0.002 Sum_probs=58.2
Q ss_pred EEEEECCcCCCccchhhhhhhhcCCCCCcEEEEEc---------Cc---------hHHHHhcCCCCeEecCCCChHHHHH
Q 038430 49 FLILNDVWDGDYNKWAPFFLCLNHGLHGSKILVTT---------RN---------ELVARMMGSTNIIFIEQLTEEECWS 110 (677)
Q Consensus 49 LlVlDdvw~~~~~~~~~l~~~~~~~~~gS~IiiTT---------R~---------~~v~~~~~~~~~~~v~~L~~~ea~~ 110 (677)
++++|++...+......+...+...... .+|+.| .+ ..+..+| ..+.+++++.++..+
T Consensus 298 VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~---~~~~~~~~~~~e~~~ 373 (456)
T 2c9o_A 298 VLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRV---MIIRTMLYTPQEMKQ 373 (456)
T ss_dssp EEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTE---EEEECCCCCHHHHHH
T ss_pred EEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhc---ceeeCCCCCHHHHHH
Confidence 8899999877666777777777765444 344344 11 1244443 257999999999999
Q ss_pred HHHHHhhcCCCCCCCcchhHHHHHHHHHh-cCCchHHHH
Q 038430 111 LFKRLAFFGCSFEDCERLEPIGQKIARKC-KGLPIAAKV 148 (677)
Q Consensus 111 LF~~~af~~~~~~~~~~~~~~~~~i~~~c-~GlPLal~~ 148 (677)
.+...+-.... . --.+....++..+ +|-|-....
T Consensus 374 iL~~~~~~~~~-~---~~~~~~~~i~~~a~~g~~r~a~~ 408 (456)
T 2c9o_A 374 IIKIRAQTEGI-N---ISEEALNHLGEIGTKTTLRYSVQ 408 (456)
T ss_dssp HHHHHHHHHTC-C---BCHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHhCC-C---CCHHHHHHHHHHccCCCHHHHHH
Confidence 99876521111 1 1233456677777 777765443
Done!