BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038431
(267 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DZ3|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation M61h From Burkholderia
Pseudomallei Complexed With Fk506
pdb|4DZ3|B Chain B, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation M61h From Burkholderia
Pseudomallei Complexed With Fk506
Length = 113
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 72/139 (51%), Gaps = 31/139 (22%)
Query: 126 TESGLQYKDLRQGSGPKPKMGETVVVDWDGYTIGYYGRIFEARNKTKGGSFEGDDKDYFK 185
TESGL+Y+DL +GSG + + G+TV V + G+ G+ F++ D D F
Sbjct: 6 TESGLKYEDLTEGSGAEARAGQTVSVHYTGWLTD--GQKFDSSK---------DRNDPFA 54
Query: 186 FRLGSQDVIPAFEEAVSGMALGGVRRIIVPPEIGYPENDYNKSGPRPTTFSGQRALDFVL 245
F LG VI ++E V GM +GGVRR+ +PP++GY G R V+
Sbjct: 55 FVLGGGHVIKGWDEGVQGMKVGGVRRLTIPPQLGY----------------GARGAGGVI 98
Query: 246 RNQGLIDKTLLFDIELLKI 264
+ TL+F++ELL +
Sbjct: 99 PP----NATLVFEVELLDV 113
>pdb|2Y78|A Chain A, Crystal Structure Of Bpss1823, A Mip-Like Chaperone From
Burkholderia Pseudomallei
Length = 133
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 72/139 (51%), Gaps = 31/139 (22%)
Query: 126 TESGLQYKDLRQGSGPKPKMGETVVVDWDGYTIGYYGRIFEARNKTKGGSFEGDDKDYFK 185
TESGL+Y+DL +GSG + + G+TV V + G+ G+ F++ D D F
Sbjct: 26 TESGLKYEDLTEGSGAEARAGQTVSVHYTGWLT--DGQKFDSSK---------DRNDPFA 74
Query: 186 FRLGSQDVIPAFEEAVSGMALGGVRRIIVPPEIGYPENDYNKSGPRPTTFSGQRALDFVL 245
F LG VI ++E V GM +GGVRR+ +PP++GY G R V+
Sbjct: 75 FVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGY----------------GARGAGGVI 118
Query: 246 RNQGLIDKTLLFDIELLKI 264
+ TL+F++ELL +
Sbjct: 119 PP----NATLVFEVELLDV 133
>pdb|2KE0|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei
pdb|2KO7|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei Complexed With
Cycloheximide-N- Ethylethanoate
pdb|2L2S|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei Complexed With
1-{[(4-Methylphenyl) Thio]acetyl}piperidine
Length = 117
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 72/139 (51%), Gaps = 31/139 (22%)
Query: 126 TESGLQYKDLRQGSGPKPKMGETVVVDWDGYTIGYYGRIFEARNKTKGGSFEGDDKDYFK 185
TESGL+Y+DL +GSG + + G+TV V + G+ G+ F++ D D F
Sbjct: 10 TESGLKYEDLTEGSGAEARAGQTVSVHYTGWLT--DGQKFDSSK---------DRNDPFA 58
Query: 186 FRLGSQDVIPAFEEAVSGMALGGVRRIIVPPEIGYPENDYNKSGPRPTTFSGQRALDFVL 245
F LG VI ++E V GM +GGVRR+ +PP++GY G R V+
Sbjct: 59 FVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGY----------------GARGAGGVI 102
Query: 246 RNQGLIDKTLLFDIELLKI 264
+ TL+F++ELL +
Sbjct: 103 PP----NATLVFEVELLDV 117
>pdb|3UQA|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation A54e From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 73/139 (52%), Gaps = 31/139 (22%)
Query: 126 TESGLQYKDLRQGSGPKPKMGETVVVDWDGYTIGYYGRIFEARNKTKGGSFEGDDKDYFK 185
TESGL+Y+DL +GSG + + G+TV V + G+ G+ F++ D D F+
Sbjct: 102 TESGLKYEDLTEGSGAEARAGQTVSVHYTGWLTD--GQKFDSSK---------DRNDPFE 150
Query: 186 FRLGSQDVIPAFEEAVSGMALGGVRRIIVPPEIGYPENDYNKSGPRPTTFSGQRALDFVL 245
F LG VI ++E V GM +GGVRR+ +PP++GY G R V+
Sbjct: 151 FVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGY----------------GARGAGGVI 194
Query: 246 RNQGLIDKTLLFDIELLKI 264
+ TL+F++ELL +
Sbjct: 195 PP----NATLVFEVELLDV 209
>pdb|3VAW|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation V3i From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 72/139 (51%), Gaps = 31/139 (22%)
Query: 126 TESGLQYKDLRQGSGPKPKMGETVVVDWDGYTIGYYGRIFEARNKTKGGSFEGDDKDYFK 185
TESGL+Y+DL +GSG + + G+TV V + G+ G+ F++ D D F
Sbjct: 102 TESGLKYEDLTEGSGAEARAGQTVSVHYTGWLTD--GQKFDSSK---------DRNDPFA 150
Query: 186 FRLGSQDVIPAFEEAVSGMALGGVRRIIVPPEIGYPENDYNKSGPRPTTFSGQRALDFVL 245
F LG VI ++E V GM +GGVRR+ +PP++GY G R V+
Sbjct: 151 FVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGY----------------GARGAGGVI 194
Query: 246 RNQGLIDKTLLFDIELLKI 264
+ TL+F++ELL +
Sbjct: 195 PP----NATLVFEVELLDV 209
>pdb|3UF8|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With A G95a Surface Mutation From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 72/139 (51%), Gaps = 31/139 (22%)
Query: 126 TESGLQYKDLRQGSGPKPKMGETVVVDWDGYTIGYYGRIFEARNKTKGGSFEGDDKDYFK 185
TESGL+Y+DL +GSG + + G+TV V + G+ G+ F++ D D F
Sbjct: 102 TESGLKYEDLTEGSGAEARAGQTVSVHYTGWLTD--GQKFDSSK---------DRNDPFA 150
Query: 186 FRLGSQDVIPAFEEAVSGMALGGVRRIIVPPEIGYPENDYNKSGPRPTTFSGQRALDFVL 245
F LG VI ++E V GM +GGVRR+ +PP++GY G R V+
Sbjct: 151 FVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGY----------------GARGAAGVI 194
Query: 246 RNQGLIDKTLLFDIELLKI 264
+ TL+F++ELL +
Sbjct: 195 PP----NATLVFEVELLDV 209
>pdb|4GGQ|C Chain C, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|D Chain D, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
Length = 209
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 72/139 (51%), Gaps = 31/139 (22%)
Query: 126 TESGLQYKDLRQGSGPKPKMGETVVVDWDGYTIGYYGRIFEARNKTKGGSFEGDDKDYFK 185
TESGL+Y+DL +GSG + + G+TV V + G+ G+ F++ D D F
Sbjct: 102 TESGLKYEDLTEGSGAEARAGQTVSVHYTGWLTD--GQKFDSSK---------DRNDPFA 150
Query: 186 FRLGSQDVIPAFEEAVSGMALGGVRRIIVPPEIGYPENDYNKSGPRPTTFSGQRALDFVL 245
F LG VI ++E V GM +GGVRR+ +PP++GY G R V+
Sbjct: 151 FVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGY----------------GARGAGGVI 194
Query: 246 RNQGLIDKTLLFDIELLKI 264
+ TL+F++ELL +
Sbjct: 195 PP----NATLVFEVELLDV 209
>pdb|3UQB|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Fk506
pdb|4FN2|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4FN2|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4G50|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4G50|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4GIV|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
pdb|4GIV|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
Length = 209
Score = 70.9 bits (172), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 72/139 (51%), Gaps = 31/139 (22%)
Query: 126 TESGLQYKDLRQGSGPKPKMGETVVVDWDGYTIGYYGRIFEARNKTKGGSFEGDDKDYFK 185
TESGL+Y+DL +GSG + + G+TV V + G+ + K GS + D D F
Sbjct: 102 TESGLKYEDLTEGSGAEARAGQTVSVHYTGWLT----------DGQKFGSSK-DRNDPFA 150
Query: 186 FRLGSQDVIPAFEEAVSGMALGGVRRIIVPPEIGYPENDYNKSGPRPTTFSGQRALDFVL 245
F LG VI ++E V GM +GGVRR+ +PP++GY G R V+
Sbjct: 151 FVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGY----------------GARGAGGVI 194
Query: 246 RNQGLIDKTLLFDIELLKI 264
+ TL+F++ELL +
Sbjct: 195 PP----NATLVFEVELLDV 209
>pdb|4DZ2|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation R92g From Burkholderia
Pseudomallei Complexed With Fk506
pdb|4DZ2|B Chain B, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation R92g From Burkholderia
Pseudomallei Complexed With Fk506
Length = 113
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 55/93 (59%), Gaps = 11/93 (11%)
Query: 126 TESGLQYKDLRQGSGPKPKMGETVVVDWDGYTIGYYGRIFEARNKTKGGSFEGDDKDYFK 185
TESGL+Y+DL +GSG + + G+TV V + G+ G+ F++ D D F
Sbjct: 6 TESGLKYEDLTEGSGAEARAGQTVSVHYTGWLTD--GQKFDSSK---------DRNDPFA 54
Query: 186 FRLGSQDVIPAFEEAVSGMALGGVRRIIVPPEI 218
F LG VI ++E V GM +GGVRR+ +PP++
Sbjct: 55 FVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQL 87
>pdb|1FD9|A Chain A, Crystal Structure Of The Macrophage Infectivity
Potentiator Protein (Mip) A Major Virulence Factor From
Legionella Pneumophila
Length = 213
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 56/125 (44%), Gaps = 18/125 (14%)
Query: 100 AEF---ADMPALRGKDYGKTKMRYPDYTETESGLQYKDLRQGSGPKPKMGETVVVDWDGY 156
AEF AD ++G+ + P SGLQYK + G+G KP +TV V++ G
Sbjct: 75 AEFNKKADENKVKGEAFLTENKNKPGVVVLPSGLQYKVINSGNGVKPGKSDTVTVEYTGR 134
Query: 157 TIGYYGRIFEARNKT-KGGSFEGDDKDYFKFRLGSQDVIPAFEEAVSGMALGGVRRIIVP 215
I G +F++ KT K +F+ VIP + EA+ M G I VP
Sbjct: 135 LID--GTVFDSTEKTGKPATFQ------------VSQVIPGWTEALQLMPAGSTWEIYVP 180
Query: 216 PEIGY 220
+ Y
Sbjct: 181 SGLAY 185
>pdb|1C9H|A Chain A, Crystal Structure Of Fkbp12.6 In Complex With Rapamycin
Length = 107
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 59/137 (43%), Gaps = 32/137 (23%)
Query: 129 GLQYKDLRQGSGPK-PKMGETVVVDWDGYTIGYYGRIFEARNKTKGGSFEGDDKDYFKFR 187
G++ + + G G PK G+T VV + G G+ F++ D FKFR
Sbjct: 1 GVEIETISPGDGRTFPKKGQTCVVHYTGML--QNGKKFDSSR---------DRNKPFKFR 49
Query: 188 LGSQDVIPAFEEAVSGMALGGVRRIIVPPEIGYPENDYNKSGPRPTTFSGQRALDFVLRN 247
+G Q+VI FEE + M+LG ++ P++ Y + P
Sbjct: 50 IGKQEVIKGFEEGAAQMSLGQRAKLTCTPDVAYGATGHPGVIPP---------------- 93
Query: 248 QGLIDKTLLFDIELLKI 264
+ TL+FD+ELL +
Sbjct: 94 ----NATLIFDVELLNL 106
>pdb|2UZ5|A Chain A, Solution Structure Of The Fkbp-Domain Of Legionella
Pneumophila Mip
pdb|2VCD|A Chain A, Solution Structure Of The Fkbp-domain Of Legionella
Pneumophila Mip In Complex With Rapamycin
Length = 137
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 53/119 (44%), Gaps = 15/119 (12%)
Query: 103 ADMPALRGKDYGKTKMRYPDYTETESGLQYKDLRQGSGPKPKMGETVVVDWDGYTIGYYG 162
AD ++G+ + P SGLQYK + G+G KP +TV V++ G I G
Sbjct: 5 ADENKVKGEAFLTENKNKPGVVVLPSGLQYKVINSGNGVKPGKSDTVTVEYTGRLID--G 62
Query: 163 RIFEARNKT-KGGSFEGDDKDYFKFRLGSQDVIPAFEEAVSGMALGGVRRIIVPPEIGY 220
+F++ KT K +F+ VIP + EA+ M G I VP + Y
Sbjct: 63 TVFDSTEKTGKPATFQ------------VSQVIPGWTEALQLMPAGSTWEIYVPSGLAY 109
>pdb|2DG4|A Chain A, Fk506-Binding Protein Mutant Wf59 Complexed With Rapamycin
Length = 107
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 61/139 (43%), Gaps = 36/139 (25%)
Query: 129 GLQYKDLRQGSGPK-PKMGETVVVDWDGYTIGYYGRIFEARNKTKGGSFEGDDKDYFKFR 187
G+Q + + G G PK G+T VV + G G+ F++ D FKF
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGML--EDGKKFDSSR---------DRNKPFKFM 49
Query: 188 LGSQDVIPAFEEAVSGMALGGVRRIIVPPEIGYPENDYNKSGPRPTTFSGQRALDFVLRN 247
LG Q+VI FEE V+ M++G ++ + P+ Y +
Sbjct: 50 LGKQEVIRGFEEGVAQMSVGQRAKLTISPDYAYGATGH---------------------- 87
Query: 248 QGLI--DKTLLFDIELLKI 264
G+I TL+FD+ELLK+
Sbjct: 88 PGIIPPHATLVFDVELLKL 106
>pdb|1Q6U|A Chain A, Crystal Structure Of Fkpa From Escherichia Coli
Length = 245
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 73/158 (46%), Gaps = 34/158 (21%)
Query: 109 RGKDYGKTKMRYPDYTETESGLQYKDLRQGSGPKPKMGETVVVDWDGYTIGYYGRIFEAR 168
+GK+Y + + + +GL Y+ + G G PK +TVVV++ G I G+ F+
Sbjct: 102 KGKEYREKFAKEKGVKTSSTGLVYQVVEAGKGEAPKDSDTVVVNYKGTLID--GKEFD-N 158
Query: 169 NKTKGGSFEGDDKDYFKFRLGSQDVIPAFEEAVSGMALGGVRRIIVPPEIGYPENDYNKS 228
+ T+G + FRL VIP + E + + GG ++++PPE+ Y
Sbjct: 159 SYTRG--------EPLSFRLDG--VIPGWTEGLKNIKKGGKIKLVIPPELAY-------- 200
Query: 229 GPRPTTFSGQRALDFVLRNQGLIDKTLLFDIELLKIIP 266
G+ + + N TL+FD+ELL + P
Sbjct: 201 --------GKAGVPGIPPNS-----TLVFDVELLDVKP 225
>pdb|1FKK|A Chain A, Atomic Structure Of Fkbp12, An Immunophilin Binding
Protein
pdb|1FKL|A Chain A, Atomic Structure Of Fkbp12-Rapaymycin, An Immunophilin-
Immunosuppressant Complex
Length = 107
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 62/139 (44%), Gaps = 36/139 (25%)
Query: 129 GLQYKDLRQGSGPK-PKMGETVVVDWDGYTIGYYGRIFEARNKTKGGSFEGDDKDYFKFR 187
G+Q + + G G PK G+T VV + G G+ F++ D FKF
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGML--EDGKKFDSSR---------DRNKPFKFV 49
Query: 188 LGSQDVIPAFEEAVSGMALGGVRRIIVPPEIGYPENDYNKSGPRPTTFSGQRALDFVLRN 247
LG Q+VI +EE V+ M++G ++ + P+ Y +
Sbjct: 50 LGKQEVIRGWEEGVAQMSVGQRAKLTISPDYAYGATGH---------------------- 87
Query: 248 QGLI--DKTLLFDIELLKI 264
G+I + TL+FD+ELLK+
Sbjct: 88 PGIIPPNATLIFDVELLKL 106
>pdb|1TCO|C Chain C, Ternary Complex Of A Calcineurin A Fragment, Calcineurin
B, Fkbp12 And The Immunosuppressant Drug Fk506
(tacrolimus)
Length = 107
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 61/139 (43%), Gaps = 36/139 (25%)
Query: 129 GLQYKDLRQGSGPK-PKMGETVVVDWDGYTIGYYGRIFEARNKTKGGSFEGDDKDYFKFR 187
G+Q + + G G PK G+T VV + G G+ F++ D FKF
Sbjct: 1 GVQVETISPGDGRTFPKAGQTCVVHYTGML--EDGKKFDSSR---------DRNKPFKFM 49
Query: 188 LGSQDVIPAFEEAVSGMALGGVRRIIVPPEIGYPENDYNKSGPRPTTFSGQRALDFVLRN 247
LG Q+VI +EE V+ M++G ++ + P+ Y +
Sbjct: 50 LGKQEVIRGWEEGVAQMSVGQRAKLTISPDYAYGATGH---------------------- 87
Query: 248 QGLI--DKTLLFDIELLKI 264
G+I TL+FD+ELLK+
Sbjct: 88 PGIIPPHATLVFDVELLKL 106
>pdb|3H9R|B Chain B, Crystal Structure Of The Kinase Domain Of Type I Activin
Receptor (Acvr1) In Complex With Fkbp12 And Dorsomorphin
pdb|3MDY|B Chain B, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
pdb|3MDY|D Chain D, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
Length = 109
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 61/139 (43%), Gaps = 36/139 (25%)
Query: 129 GLQYKDLRQGSGPK-PKMGETVVVDWDGYTIGYYGRIFEARNKTKGGSFEGDDKDYFKFR 187
G+Q + + G G PK G+T VV + G G+ F++ D FKF
Sbjct: 3 GVQVETISPGDGRTFPKRGQTCVVHYTGML--EDGKKFDSSR---------DRNKPFKFM 51
Query: 188 LGSQDVIPAFEEAVSGMALGGVRRIIVPPEIGYPENDYNKSGPRPTTFSGQRALDFVLRN 247
LG Q+VI +EE V+ M++G ++ + P+ Y +
Sbjct: 52 LGKQEVIRGWEEGVAQMSVGQRAKLTISPDYAYGATGH---------------------- 89
Query: 248 QGLI--DKTLLFDIELLKI 264
G+I TL+FD+ELLK+
Sbjct: 90 PGIIPPHATLVFDVELLKL 108
>pdb|2FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- (C16)-Ethoxy Rapamycin Complex Interacting With
Huma
pdb|1B6C|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|C Chain C, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|E Chain E, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|G Chain G, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1QPF|A Chain A, Fk506 Binding Protein (12 Kda, Human) Complex With
L-709,858
pdb|1QPF|D Chain D, Fk506 Binding Protein (12 Kda, Human) Complex With
L-709,858
pdb|1QPL|A Chain A, Fk506 Binding Protein (12 Kda, Human) Complex With
L-707,587
pdb|1QPL|C Chain C, Fk506 Binding Protein (12 Kda, Human) Complex With
L-707,587
pdb|1D6O|A Chain A, Native Fkbp
pdb|1D6O|B Chain B, Native Fkbp
pdb|1D7H|A Chain A, Fkbp Complexed With Dmso
pdb|1D7H|B Chain B, Fkbp Complexed With Dmso
pdb|1D7I|A Chain A, Fkbp Complexed With Methyl Methylsulfinylmethyl Sulfide
(Dss)
pdb|1D7I|B Chain B, Fkbp Complexed With Methyl Methylsulfinylmethyl Sulfide
(Dss)
pdb|1D7J|A Chain A, Fkbp Complexed With 4-Hydroxy-2-Butanone
pdb|1D7J|B Chain B, Fkbp Complexed With 4-Hydroxy-2-Butanone
pdb|3FAP|A Chain A, Atomic Structures Of The Rapamycin Analogs In Complex With
Both Human Fkbp12 And Frb Domain Of Frap
pdb|4FAP|A Chain A, Atomic Structures Of The Rapamycin Analogs In Complex With
Both Human Fkbp12 And Frb Domain Of Frap
pdb|1J4R|A Chain A, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4R|B Chain B, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4R|D Chain D, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4H|A Chain A, Crystal Structure Analysis Of The Fkbp12 Complexed With
000107 Small Molecule
pdb|1J4I|A Chain A, Crystal Structure Analysis Of The Fkbp12 Complexed With
000308 Small Molecule
pdb|2DG3|A Chain A, Wildtype Fk506-Binding Protein Complexed With Rapamycin
pdb|1FKD|A Chain A, Fk-506 Binding Protein: Three-Dimensional Structure Of The
Complex With The Antagonist L-685,818
pdb|1FKF|A Chain A, Atomic Structure Of Fkbp-Fk506, An
Immunophilin-Immunosuppressant Complex
pdb|1FKJ|A Chain A, Atomic Structure Of Fkbp12-Fk506, An Immunophilin
Immunosuppressant Complex
pdb|2FKE|A Chain A, Fk-506-Binding Protein: Three-Dimensional Structure Of The
Complex With The Antagonist L-685,818
pdb|1F40|A Chain A, Solution Structure Of Fkbp12 Complexed With Gpi-1046, A
Neurotrophic Ligand
pdb|1FKR|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|1FKS|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|1FKT|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|2PPN|A Chain A, Crystal Structure Of Fkbp12
pdb|1A7X|A Chain A, Fkbp12-Fk1012 Complex
pdb|1A7X|B Chain B, Fkbp12-Fk1012 Complex
pdb|4DH0|A Chain A, X-Ray Crystal Structure Of 28-O-Methylrapamycin Complexed
With Fkbp12: Is The Cyclohexyl Moiety Part Of The
Effector Domain Of Rapamycin?
pdb|2RSE|A Chain A, Nmr Structure Of Fkbp12-Mtor Frb Domain-Rapamycin Complex
Structure Determined Based On Pcs
pdb|1NSG|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- Rapamycin Complex Interacting With Human Frap
Length = 107
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 61/139 (43%), Gaps = 36/139 (25%)
Query: 129 GLQYKDLRQGSGPK-PKMGETVVVDWDGYTIGYYGRIFEARNKTKGGSFEGDDKDYFKFR 187
G+Q + + G G PK G+T VV + G G+ F++ D FKF
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGML--EDGKKFDSSR---------DRNKPFKFM 49
Query: 188 LGSQDVIPAFEEAVSGMALGGVRRIIVPPEIGYPENDYNKSGPRPTTFSGQRALDFVLRN 247
LG Q+VI +EE V+ M++G ++ + P+ Y +
Sbjct: 50 LGKQEVIRGWEEGVAQMSVGQRAKLTISPDYAYGATGH---------------------- 87
Query: 248 QGLI--DKTLLFDIELLKI 264
G+I TL+FD+ELLK+
Sbjct: 88 PGIIPPHATLVFDVELLKL 106
>pdb|2DG9|A Chain A, Fk506-Binding Protein Mutant Wl59 Complexed With Rapamycin
Length = 107
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 60/139 (43%), Gaps = 36/139 (25%)
Query: 129 GLQYKDLRQGSGPK-PKMGETVVVDWDGYTIGYYGRIFEARNKTKGGSFEGDDKDYFKFR 187
G+Q + + G G PK G+T VV + G G+ F++ D FKF
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGML--EDGKKFDSSR---------DRNKPFKFM 49
Query: 188 LGSQDVIPAFEEAVSGMALGGVRRIIVPPEIGYPENDYNKSGPRPTTFSGQRALDFVLRN 247
LG Q+VI EE V+ M++G ++ + P+ Y +
Sbjct: 50 LGKQEVIRGLEEGVAQMSVGQRAKLTISPDYAYGATGH---------------------- 87
Query: 248 QGLI--DKTLLFDIELLKI 264
G+I TL+FD+ELLK+
Sbjct: 88 PGIIPPHATLVFDVELLKL 106
>pdb|1BKF|A Chain A, Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX WITH
Immunosuppressant Fk506
Length = 107
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 61/137 (44%), Gaps = 32/137 (23%)
Query: 129 GLQYKDLRQGSGPK-PKMGETVVVDWDGYTIGYYGRIFEARNKTKGGSFEGDDKDYFKFR 187
G+Q + + G G PK G+T VV + G G+ F++ D FKF
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGML--EDGKKFDSSR---------DKNKPFKFM 49
Query: 188 LGSQDVIPAFEEAVSGMALGGVRRIIVPPEIGYPENDYNKSGPRPTTFSGQRALDFVLRN 247
LG Q+VI +EE V+ M++G ++ + P+ Y G + ++
Sbjct: 50 LGKQEVIRGWEEGVAQMSVGQRAKLTISPDYAY----------------GATGVPGIIPP 93
Query: 248 QGLIDKTLLFDIELLKI 264
TL+FD+ELLK+
Sbjct: 94 HA----TLVFDVELLKL 106
>pdb|1BL4|A Chain A, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand
pdb|1BL4|B Chain B, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand
Length = 107
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 59/139 (42%), Gaps = 36/139 (25%)
Query: 129 GLQYKDLRQGSGPK-PKMGETVVVDWDGYTIGYYGRIFEARNKTKGGSFEGDDKDYFKFR 187
G+Q + + G G PK G+T VV + G + E K D FKF
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTG--------MLEDGKKVDSSR---DRNKPFKFM 49
Query: 188 LGSQDVIPAFEEAVSGMALGGVRRIIVPPEIGYPENDYNKSGPRPTTFSGQRALDFVLRN 247
LG Q+VI +EE V+ M++G ++ + P+ Y +
Sbjct: 50 LGKQEVIRGWEEGVAQMSVGQRAKLTISPDYAYGATGH---------------------- 87
Query: 248 QGLI--DKTLLFDIELLKI 264
G+I TL+FD+ELLK+
Sbjct: 88 PGIIPPHATLVFDVELLKL 106
>pdb|1EYM|A Chain A, Fk506 Binding Protein Mutant, Homodimeric Complex
pdb|1EYM|B Chain B, Fk506 Binding Protein Mutant, Homodimeric Complex
Length = 107
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 59/139 (42%), Gaps = 36/139 (25%)
Query: 129 GLQYKDLRQGSGPK-PKMGETVVVDWDGYTIGYYGRIFEARNKTKGGSFEGDDKDYFKFR 187
G+Q + + G G PK G+T VV + G + E K D FKF
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTG--------MLEDGKKMDSSR---DRNKPFKFM 49
Query: 188 LGSQDVIPAFEEAVSGMALGGVRRIIVPPEIGYPENDYNKSGPRPTTFSGQRALDFVLRN 247
LG Q+VI +EE V+ M++G ++ + P+ Y +
Sbjct: 50 LGKQEVIRGWEEGVAQMSVGQRAKLTISPDYAYGATGH---------------------- 87
Query: 248 QGLI--DKTLLFDIELLKI 264
G+I TL+FD+ELLK+
Sbjct: 88 PGIIPPHATLVFDVELLKL 106
>pdb|2PPP|A Chain A, Crystal Structure Of E60q Mutant Of Fkbp12
Length = 107
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 61/139 (43%), Gaps = 36/139 (25%)
Query: 129 GLQYKDLRQGSGPK-PKMGETVVVDWDGYTIGYYGRIFEARNKTKGGSFEGDDKDYFKFR 187
G+Q + + G G PK G+T VV + G G+ F++ D FKF
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGML--EDGKKFDSSR---------DRNKPFKFM 49
Query: 188 LGSQDVIPAFEEAVSGMALGGVRRIIVPPEIGYPENDYNKSGPRPTTFSGQRALDFVLRN 247
LG Q+VI ++E V+ M++G ++ + P+ Y +
Sbjct: 50 LGKQEVIRGWQEGVAQMSVGQRAKLTISPDYAYGATGHP--------------------- 88
Query: 248 QGLI--DKTLLFDIELLKI 264
G+I TL+FD+ELLK+
Sbjct: 89 -GIIPPHATLVFDVELLKL 106
>pdb|4DIP|A Chain A, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|B Chain B, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|C Chain C, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|D Chain D, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|E Chain E, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|F Chain F, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|G Chain G, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|H Chain H, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|I Chain I, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|J Chain J, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
Length = 125
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 57/123 (46%), Gaps = 29/123 (23%)
Query: 142 KPKMGETVVVDWDGYTIGYYGRIFEARNKTKGGSFEGDDKDYFKFRLGSQDVIPAFEEAV 201
K K G+ ++V ++GY + G +F + +K G F LG + + +++ +
Sbjct: 28 KTKGGDLMLVHYEGY-LEKDGSLFHSTHKHNNGQ-------PIWFTLGILEALKGWDQGL 79
Query: 202 SGMALGGVRRIIVPPEIGYPENDYNKSGPRPTTFSGQRALDFVLRNQGLIDKTLLFDIEL 261
GM +G R++I+PP +GY + K P + TL+F+I+L
Sbjct: 80 KGMCVGEKRKLIIPPALGYGKEGKGKIPP---------------------ESTLIFNIDL 118
Query: 262 LKI 264
L+I
Sbjct: 119 LEI 121
>pdb|1Q6H|A Chain A, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli
pdb|1Q6H|B Chain B, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli
pdb|1Q6I|A Chain A, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli, In Complex With Immunosuppressant
Fk506
pdb|1Q6I|B Chain B, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli, In Complex With Immunosuppressant
Fk506
Length = 224
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 72/156 (46%), Gaps = 34/156 (21%)
Query: 109 RGKDYGKTKMRYPDYTETESGLQYKDLRQGSGPKPKMGETVVVDWDGYTIGYYGRIFEAR 168
+GK+Y + + + +GL Y+ + G G PK +TVVV++ G I G+ F+
Sbjct: 102 KGKEYREKFAKEKGVKTSSTGLVYQVVEAGKGEAPKDSDTVVVNYKGTLID--GKEFD-N 158
Query: 169 NKTKGGSFEGDDKDYFKFRLGSQDVIPAFEEAVSGMALGGVRRIIVPPEIGYPENDYNKS 228
+ T+G + FRL VIP + E + + GG ++++PPE+ Y
Sbjct: 159 SYTRG--------EPLSFRLDG--VIPGWTEGLKNIKKGGKIKLVIPPELAY-------- 200
Query: 229 GPRPTTFSGQRALDFVLRNQGLIDKTLLFDIELLKI 264
G+ + + N TL+FD+ELL +
Sbjct: 201 --------GKAGVPGIPPNS-----TLVFDVELLDV 223
>pdb|1FKB|A Chain A, Atomic Structure Of The Rapamycin Human Immunophilin Fkbp-
12 Complex
pdb|1FKG|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FKH|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- Rapamycin Complex Interacting With Human Frap
pdb|1FKI|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FKI|B Chain B, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
Length = 107
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 54/124 (43%), Gaps = 35/124 (28%)
Query: 143 PKMGETVVVDWDGYTIGYYGRIFEARNKTKGGSFEGDDKDYFKFRLGSQDVIPAFEEAVS 202
PK G+T VV + G G+ F++ D FKF LG Q+VI +EE V+
Sbjct: 16 PKRGQTCVVHYTGML--EDGKKFDSSR---------DRNKPFKFMLGKQEVIRGWEEGVA 64
Query: 203 GMALGGVRRIIVPPEIGYPENDYNKSGPRPTTFSGQRALDFVLRNQGLI--DKTLLFDIE 260
M++G ++ + P+ Y + G+I TL+FD+E
Sbjct: 65 QMSVGQRAKLTISPDYAYGATGH----------------------PGIIPPHATLVFDVE 102
Query: 261 LLKI 264
LLK+
Sbjct: 103 LLKL 106
>pdb|2PPO|A Chain A, Crystal Structure Of E60a Mutant Of Fkbp12
Length = 107
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 60/139 (43%), Gaps = 36/139 (25%)
Query: 129 GLQYKDLRQGSGPK-PKMGETVVVDWDGYTIGYYGRIFEARNKTKGGSFEGDDKDYFKFR 187
G+Q + + G G PK G+T VV + G G+ F++ D FKF
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGML--EDGKKFDSSR---------DRNKPFKFM 49
Query: 188 LGSQDVIPAFEEAVSGMALGGVRRIIVPPEIGYPENDYNKSGPRPTTFSGQRALDFVLRN 247
LG Q+VI + E V+ M++G ++ + P+ Y +
Sbjct: 50 LGKQEVIRGWAEGVAQMSVGQRAKLTISPDYAYGATGH---------------------- 87
Query: 248 QGLI--DKTLLFDIELLKI 264
G+I TL+FD+ELLK+
Sbjct: 88 PGIIPPHATLVFDVELLKL 106
>pdb|2PBC|A Chain A, Fk506-Binding Protein 2
pdb|2PBC|B Chain B, Fk506-Binding Protein 2
pdb|2PBC|C Chain C, Fk506-Binding Protein 2
pdb|2PBC|D Chain D, Fk506-Binding Protein 2
Length = 102
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 20/81 (24%)
Query: 184 FKFRLGSQDVIPAFEEAVSGMALGGVRRIIVPPEIGYPENDYNKSGPRPTTFSGQRALDF 243
F F LG+ VI +++ + GM G R++++P E+GY E G P G
Sbjct: 36 FVFSLGTGQVIKGWDQGLLGMCEGEKRKLVIPSELGYGER-----GAPPKIPGG------ 84
Query: 244 VLRNQGLIDKTLLFDIELLKI 264
TL+F++ELLKI
Sbjct: 85 ---------ATLVFEVELLKI 96
>pdb|1ROT|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda
Fk506-Binding Protein, Nmr, Minimized Average Structure
pdb|1ROU|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda
Fk506-Binding Protein, Nmr, 22 Structures
Length = 149
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 12/86 (13%)
Query: 136 RQGSGPK-PKMGETVVVDWDGYTIGYYGRIFEARNKTKGGSFEGDDKDYFKFRLGSQDVI 194
R+G+G + P +G+ V V + G+ + G F++ D KD F F LG +VI
Sbjct: 38 REGTGTETPMIGDRVFVHYTGWLLD--GTKFDSSL---------DRKDKFSFDLGKGEVI 86
Query: 195 PAFEEAVSGMALGGVRRIIVPPEIGY 220
A++ AV+ M +G + RI PE Y
Sbjct: 87 KAWDIAVATMKVGELCRITCKPEYAY 112
>pdb|1Q1C|A Chain A, Crystal Structure Of N(1-260) Of Human Fkbp52
Length = 280
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 12/86 (13%)
Query: 136 RQGSGPK-PKMGETVVVDWDGYTIGYYGRIFEARNKTKGGSFEGDDKDYFKFRLGSQDVI 194
R+G+G + P +G+ V V + G+ + G F++ D KD F F LG +VI
Sbjct: 59 REGTGTEMPMIGDRVFVHYTGWLLD--GTKFDSSL---------DRKDKFSFDLGKGEVI 107
Query: 195 PAFEEAVSGMALGGVRRIIVPPEIGY 220
A++ A++ M +G V I PE Y
Sbjct: 108 KAWDIAIATMKVGEVCHITCKPEYAY 133
>pdb|1N1A|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52
pdb|1N1A|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52
Length = 140
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 12/86 (13%)
Query: 136 RQGSGPK-PKMGETVVVDWDGYTIGYYGRIFEARNKTKGGSFEGDDKDYFKFRLGSQDVI 194
R+G+G + P +G+ V V + G+ + G F++ D KD F F LG +VI
Sbjct: 39 REGTGTEMPMIGDRVFVHYTGWLLD--GTKFDSSL---------DRKDKFSFDLGKGEVI 87
Query: 195 PAFEEAVSGMALGGVRRIIVPPEIGY 220
A++ A++ M +G V I PE Y
Sbjct: 88 KAWDIAIATMKVGEVCHITCKPEYAY 113
>pdb|3JXV|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
Length = 356
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 45/112 (40%), Gaps = 22/112 (19%)
Query: 153 WDGYTIGYYGRIFEARNKTKGGSFEG--DDKDYFKFRLGSQDVIPAFEEAVSGMALGGVR 210
WD +G + G F+ D D FKF+LG VI +++ + M G
Sbjct: 24 WDTPEVGDEVEVHYTGTLLDGKKFDSSRDRDDTFKFKLGQGQVIKGWDQGIKTMKKGENA 83
Query: 211 RIIVPPEIGYPENDYNKSGPRPTTFSGQRALDFVLRNQGLIDKTLLFDIELL 262
+PPE+ Y E SG PT + + TL FD+ELL
Sbjct: 84 LFTIPPELAYGE-----SGSPPTIPA---------------NATLQFDVELL 115
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 179 DDKDYFKFRLGSQDVIPAFEEAVSGMALGGVRRIIVPPEIGY 220
D+++ F+F+ + VI + AV M G V + +PPE Y
Sbjct: 286 DEQEPFEFKTDEEAVIEGLDRAVLNMKKGEVALVTIPPEYAY 327
>pdb|3JYM|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
pdb|3JYM|B Chain B, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
Length = 377
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 45/112 (40%), Gaps = 22/112 (19%)
Query: 153 WDGYTIGYYGRIFEARNKTKGGSFEG--DDKDYFKFRLGSQDVIPAFEEAVSGMALGGVR 210
WD +G + G F+ D D FKF+LG VI +++ + M G
Sbjct: 40 WDTPEVGDEVEVHYTGTLLDGKKFDSSRDRDDTFKFKLGQGQVIKGWDQGIKTMKKGENA 99
Query: 211 RIIVPPEIGYPENDYNKSGPRPTTFSGQRALDFVLRNQGLIDKTLLFDIELL 262
+PPE+ Y E SG PT + + TL FD+ELL
Sbjct: 100 LFTIPPELAYGE-----SGSPPTIPA---------------NATLQFDVELL 131
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 179 DDKDYFKFRLGSQDVIPAFEEAVSGMALGGVRRIIVPPEIGY 220
D+++ F+F+ + VI + AV M G V + +PPE Y
Sbjct: 302 DEQEPFEFKTDEEAVIEGLDRAVLNMKKGEVALVTIPPEYAY 343
>pdb|4DRJ|A Chain A, O-crystal Structure Of The Ppiase Domain Of Fkbp52,
Rapamycin And The Frb Fragment Of Mtor
Length = 144
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 12/86 (13%)
Query: 136 RQGSGPK-PKMGETVVVDWDGYTIGYYGRIFEARNKTKGGSFEGDDKDYFKFRLGSQDVI 194
R+G+G + P +G+ V V + G+ + G F++ D KD F F LG +VI
Sbjct: 43 REGTGTEMPMIGDRVFVHYTGWLLD--GTKFDSSL---------DRKDKFSFDLGKGEVI 91
Query: 195 PAFEEAVSGMALGGVRRIIVPPEIGY 220
A++ A++ M +G V I PE Y
Sbjct: 92 KAWDIAIATMKVGEVCHITCKPEYAY 117
>pdb|3UQI|A Chain A, Crystallographic Structure Of Fkbp12 From Aedes Aegypti
pdb|2LPV|A Chain A, Solution Structure Of Fkbp12 From Aedes Aegypti
Length = 108
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 64/139 (46%), Gaps = 36/139 (25%)
Query: 129 GLQYKDLRQG-SGPKPKMGETVVVDWDGYTIGYYGRIFEARNKTKGGSFEGDDKDYFKFR 187
G+Q L G PK G+ VV + G G++F++ ++T+G F +F
Sbjct: 2 GVQVVTLAAGDEATYPKAGQVAVVHYTGTLAD--GKVFDS-SRTRGKPF--------RFT 50
Query: 188 LGSQDVIPAFEEAVSGMALGGVRRIIVPPEIGYPENDYNKSGPRPTTFSGQRALDFVLRN 247
+G +VI ++E V+ M++G +++ P+ Y G R +
Sbjct: 51 VGRGEVIRGWDEGVAQMSVGQRAKLVCSPDYAY----------------GSRG------H 88
Query: 248 QGLI--DKTLLFDIELLKI 264
G+I + TL FD+ELL++
Sbjct: 89 PGVIPPNATLTFDVELLRV 107
>pdb|2LGO|A Chain A, Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prolyl
Cis-Trans Isomerase From Giardia Lamblia, Seattle
Structural Genomics Center For Infectious Disease Target
Gilaa.00840.A
Length = 130
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 61/136 (44%), Gaps = 32/136 (23%)
Query: 130 LQYKDLRQGSG-PKPKMGETVVVDWDGYTIGYYGRIFEARNKTKGGSFEGDDKDYFKFRL 188
L+ K L G G KP+ G+ V V +DG G+ F++ ++++G F+ F L
Sbjct: 26 LEKKVLTPGDGVTKPQAGKKVTVHYDGRFPD--GKQFDS-SRSRGKPFQ--------FTL 74
Query: 189 GSQDVIPAFEEAVSGMALGGVRRIIVPPEIGYPENDYNKSGPRPTTFSGQRALDFVLRNQ 248
G+ +VI +++ V+ M LG +P ++ Y E Y P
Sbjct: 75 GAGEVIKGWDQGVATMTLGEKALFTIPYQLAYGERGYPPVIPP----------------- 117
Query: 249 GLIDKTLLFDIELLKI 264
TL+F++ELL +
Sbjct: 118 ---KATLVFEVELLAV 130
>pdb|1U79|A Chain A, Crystal Structure Of Atfkbp13
pdb|1U79|B Chain B, Crystal Structure Of Atfkbp13
pdb|1U79|C Chain C, Crystal Structure Of Atfkbp13
pdb|1U79|D Chain D, Crystal Structure Of Atfkbp13
pdb|1U79|E Chain E, Crystal Structure Of Atfkbp13
pdb|1Y0O|A Chain A, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|B Chain B, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|C Chain C, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|D Chain D, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|E Chain E, Crystal Structure Of Reduced Atfkbp13
Length = 129
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 19/106 (17%)
Query: 122 DYTETESGLQYKDLRQGSGPKPKMGETVVVDWDGYTIGYYGRIFEAR-NKTKGGSFEGDD 180
+++ + SGL + D G GP+ G+ + + G G++F++ N+ K
Sbjct: 6 EFSVSPSGLAFCDKVVGYGPEAVKGQLIKAHYVGKL--ENGKVFDSSYNRGK-------- 55
Query: 181 KDYFKFRLGSQDVIPAFEEAVSG------MALGGVRRIIVPPEIGY 220
FR+G +VI +++ + G M GG R + +PPE+ Y
Sbjct: 56 --PLTFRIGVGEVIKGWDQGILGSDGIPPMLTGGKRTLRIPPELAY 99
>pdb|3PRB|A Chain A, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
pdb|3PRB|B Chain B, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
pdb|3PRD|A Chain A, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
Length = 231
Score = 31.2 bits (69), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 7/100 (7%)
Query: 146 GETVVVDWDGYTIGYYGRIFEARNK--TKGGSFEGDDKDYFKFRL--GSQDVIPAFEEAV 201
G+ V + +DGY G++F+ N+ K Y + G V+P +EA+
Sbjct: 5 GKMVKISYDGYV---DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAI 61
Query: 202 SGMALGGVRRIIVPPEIGYPENDYNKSGPRPTTFSGQRAL 241
M +G R +++PPE + + D +K P + +R +
Sbjct: 62 LEMDVGEEREVVLPPEKAFGKRDPSKIKLIPLSEFTKRGI 101
>pdb|3PR9|A Chain A, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
pdb|3PRA|A Chain A, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
pdb|3PRA|B Chain B, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
Length = 157
Score = 31.2 bits (69), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 7/100 (7%)
Query: 146 GETVVVDWDGYTIGYYGRIFEARNK--TKGGSFEGDDKDYFKFRL--GSQDVIPAFEEAV 201
G+ V + +DGY G++F+ N+ K Y + G V+P +EA+
Sbjct: 5 GKMVKISYDGYV---DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAI 61
Query: 202 SGMALGGVRRIIVPPEIGYPENDYNKSGPRPTTFSGQRAL 241
M +G R +++PPE + + D +K P + +R +
Sbjct: 62 LEMDVGEEREVVLPPEKAFGKRDPSKIKLIPLSEFTKRGI 101
>pdb|3OE2|A Chain A, 1.6 A Crystal Structure Of Peptidyl-Prolyl Cis-Trans
Isomerase Ppiase From Pseudomonas Syringae Pv. Tomato
Str. Dc3000 (Pspto Dc3000)
Length = 219
Score = 31.2 bits (69), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 41/100 (41%), Gaps = 16/100 (16%)
Query: 121 PDYTETESGLQYKDLRQGSGPKPKMGETVVVDWDGYTIGYYGRIFEARNKTKGGSFEGDD 180
P E G+ +L G+GPKP V V + G G+IF+ + +
Sbjct: 110 PGVKELADGILMTELTPGTGPKPDANGRVEVRYVGRLPD--GKIFDQSTQPQW------- 160
Query: 181 KDYFKFRLGSQDVIPAFEEAVSGMALGGVRRIIVPPEIGY 220
FRL S VI + A+ M G R+++P + Y
Sbjct: 161 -----FRLDS--VISGWTSALQNMPTGAKWRLVIPSDQAY 193
>pdb|1IX5|A Chain A, Solution Structure Of The Methanococcus
Thermolithotrophicus Fkbp
Length = 151
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 180 DKDY--FKFRLGSQDVIPAFEEAVSGMALGGVRRIIVPPEIGY 220
D++Y +F +G +I FEEAV M +G + + +P E Y
Sbjct: 39 DREYEPLEFVVGEGQLIQGFEEAVLDMEVGDEKTVKIPAEKAY 81
>pdb|2KI3|A Chain A, Structural And Biochemical Characterization Of Fk506
Binding Domain From Plasmodium Vivax
pdb|3IHZ|A Chain A, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35 In Complex With Fk506
pdb|3IHZ|B Chain B, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35 In Complex With Fk506
pdb|3NI6|A Chain A, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35
pdb|3NI6|B Chain B, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35
pdb|3PA7|A Chain A, Crystal Structure Of Fkbp From Plasmodium Vivax In Complex
With Tetrapeptide Alpf
pdb|3PA7|B Chain B, Crystal Structure Of Fkbp From Plasmodium Vivax In Complex
With Tetrapeptide Alpf
Length = 126
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 13/99 (13%)
Query: 135 LRQGSGPK---PKMGETVVVDWDGYTIGYYGRIFEARNKTKGGSFEGDDKDYFKFRLGSQ 191
LR+G G + PK G V V + G + G++F++ + FKF LG
Sbjct: 22 LRKGEGGEENAPKKGNEVTVHYVG-KLESSGKVFDSSR---------ERNVPFKFHLGQG 71
Query: 192 DVIPAFEEAVSGMALGGVRRIIVPPEIGYPENDYNKSGP 230
+VI ++ V+ M + + + GY E +S P
Sbjct: 72 EVIKGWDICVASMTKNEKCSVRLDSKYGYGEEGCGESIP 110
>pdb|3Q3U|A Chain A, Trametes Cervina Lignin Peroxidase
Length = 338
Score = 27.3 bits (59), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 32 NNTPLLFHRQLAPQSLHHPHQFNGSSSYGEI 62
++TP +F Q +SL H QF GS GE+
Sbjct: 194 DSTPSVFDTQFFVESLLHGTQFTGSGQGGEV 224
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.139 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,159,025
Number of Sequences: 62578
Number of extensions: 359239
Number of successful extensions: 768
Number of sequences better than 100.0: 62
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 696
Number of HSP's gapped (non-prelim): 64
length of query: 267
length of database: 14,973,337
effective HSP length: 97
effective length of query: 170
effective length of database: 8,903,271
effective search space: 1513556070
effective search space used: 1513556070
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)