Query 038431
Match_columns 267
No_of_seqs 243 out of 1745
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 10:59:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038431.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038431hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0545 FkpA FKBP-type peptidy 100.0 2.5E-28 5.4E-33 209.9 11.6 127 106-265 79-205 (205)
2 KOG0552 FKBP-type peptidyl-pro 99.9 3.1E-25 6.8E-30 194.6 13.0 110 124-265 116-226 (226)
3 KOG0544 FKBP-type peptidyl-pro 99.9 4E-25 8.7E-30 167.6 11.3 106 129-265 2-108 (108)
4 PRK15095 FKBP-type peptidyl-pr 99.9 7.9E-25 1.7E-29 183.9 11.5 116 141-267 3-146 (156)
5 TIGR03516 ppisom_GldI peptidyl 99.9 5.8E-24 1.3E-28 182.0 14.4 124 110-266 52-177 (177)
6 PRK11570 peptidyl-prolyl cis-t 99.9 4.3E-24 9.4E-29 186.8 13.2 125 108-265 82-206 (206)
7 COG1047 SlpA FKBP-type peptidy 99.9 1.5E-23 3.2E-28 177.3 12.5 115 142-267 2-143 (174)
8 KOG0549 FKBP-type peptidyl-pro 99.9 3.4E-23 7.4E-28 175.0 13.1 109 127-266 67-177 (188)
9 PRK10737 FKBP-type peptidyl-pr 99.9 3.1E-23 6.7E-28 179.6 11.8 114 142-267 2-142 (196)
10 PRK10902 FKBP-type peptidyl-pr 99.9 1.2E-22 2.7E-27 184.0 12.9 126 107-266 125-250 (269)
11 PF00254 FKBP_C: FKBP-type pep 99.8 9.5E-19 2E-23 133.9 11.9 91 142-262 4-94 (94)
12 KOG0543 FKBP-type peptidyl-pro 99.5 7.9E-13 1.7E-17 124.3 15.0 105 127-265 83-190 (397)
13 TIGR00115 tig trigger factor. 99.3 1.4E-11 3E-16 117.9 10.2 124 104-266 99-231 (408)
14 PRK01490 tig trigger factor; P 99.2 3.5E-11 7.6E-16 116.1 10.4 124 103-266 110-242 (435)
15 COG0544 Tig FKBP-type peptidyl 99.2 3.7E-11 8E-16 116.1 8.8 125 102-266 109-242 (441)
16 KOG0543 FKBP-type peptidyl-pro 98.7 3.1E-08 6.7E-13 93.6 6.4 59 136-206 1-60 (397)
17 KOG0545 Aryl-hydrocarbon recep 97.7 1.4E-05 3E-10 71.8 1.6 82 126-216 8-91 (329)
18 KOG0549 FKBP-type peptidyl-pro 97.2 0.00011 2.3E-09 63.0 1.1 40 186-225 1-40 (188)
19 PF01346 FKBP_N: Domain amino 61.3 2.8 6.2E-05 33.1 0.1 29 106-134 96-124 (124)
20 TIGR03096 nitroso_cyanin nitro 51.3 99 0.0022 25.4 7.6 28 127-154 43-76 (135)
21 PF08139 LPAM_1: Prokaryotic m 49.9 19 0.00042 21.0 2.3 17 74-90 8-24 (25)
22 COG5633 Predicted periplasmic 46.6 57 0.0012 26.3 5.3 21 145-165 66-86 (123)
23 PRK12407 flgH flagellar basal 38.2 83 0.0018 28.0 5.7 16 142-157 64-79 (221)
24 cd01088 MetAP2 Methionine Amin 33.2 1.1E+02 0.0024 28.0 5.8 54 139-210 67-126 (291)
25 COG0024 Map Methionine aminope 33.1 1.3E+02 0.0029 27.3 6.3 54 139-210 83-146 (255)
26 PF04530 Viral_Beta_CD: Viral 33.1 92 0.002 25.2 4.6 19 44-62 4-25 (122)
27 PF10518 TAT_signal: TAT (twin 31.9 66 0.0014 18.6 2.7 20 71-90 2-21 (26)
28 PHA02122 hypothetical protein 30.5 89 0.0019 21.9 3.5 21 144-167 39-59 (65)
29 TIGR00501 met_pdase_II methion 30.3 1.3E+02 0.0029 27.5 5.9 53 139-209 71-129 (295)
30 TIGR01480 copper_res_A copper- 29.1 1.4E+02 0.0031 30.4 6.3 15 142-156 79-93 (587)
31 PRK08671 methionine aminopepti 27.8 1.5E+02 0.0032 27.1 5.8 52 140-209 69-126 (291)
32 cd01090 Creatinase Creatine am 27.5 1.7E+02 0.0038 25.5 6.0 53 140-210 74-135 (228)
33 PRK12696 flgH flagellar basal 27.4 1.6E+02 0.0035 26.4 5.8 17 141-157 64-80 (236)
34 cd01089 PA2G4-like Related to 27.0 2.4E+02 0.0051 24.5 6.7 53 140-210 80-146 (228)
35 PF01272 GreA_GreB: Transcript 26.1 69 0.0015 23.1 2.6 23 194-216 43-65 (77)
36 PF10399 UCR_Fe-S_N: Ubiquitin 25.0 79 0.0017 20.5 2.4 19 70-88 8-26 (41)
37 PTZ00053 methionine aminopepti 24.7 1.2E+02 0.0027 30.0 4.8 52 140-209 231-288 (470)
38 PLN00059 PsbP domain-containin 24.6 2.7E+02 0.0059 25.7 6.6 63 17-80 21-86 (286)
39 TIGR00495 crvDNA_42K 42K curve 23.3 1.9E+02 0.0042 27.7 5.8 52 141-210 99-164 (389)
40 PRK09810 entericidin A; Provis 22.9 94 0.002 20.3 2.5 18 74-91 4-21 (41)
41 PRK05892 nucleoside diphosphat 22.5 1.8E+02 0.004 24.3 4.9 23 194-216 122-144 (158)
42 PF13627 LPAM_2: Prokaryotic l 22.0 70 0.0015 18.4 1.5 15 77-91 3-17 (24)
43 TIGR01461 greB transcription e 21.6 3.1E+02 0.0067 22.8 6.0 24 193-216 119-142 (156)
44 PF05984 Cytomega_UL20A: Cytom 20.8 3.4E+02 0.0073 20.7 5.4 8 73-80 3-10 (100)
No 1
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.5e-28 Score=209.91 Aligned_cols=127 Identities=37% Similarity=0.707 Sum_probs=112.8
Q ss_pred CcccccccccccccCCCceecCCCeEEEEeecCCCCCCCCCCEEEEEEEEEEeccCCeEEeecccCCCCCccCCCCCceE
Q 038431 106 PALRGKDYGKTKMRYPDYTETESGLQYKDLRQGSGPKPKMGETVVVDWDGYTIGYYGRIFEARNKTKGGSFEGDDKDYFK 185 (267)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~sGl~~~~l~~G~G~~~~~Gd~V~v~Y~~~~~d~~G~~~dst~~~~~~s~~~~~~~p~~ 185 (267)
+..+++.|.+.+.+.+.+.++++|++|++++.|+|+.++.+|.|++||++++.| |++||+ +|+ +++|+.
T Consensus 79 ~~~~~~~f~~~~~k~~~v~~~~sgl~y~~~~~G~G~~~~~~~~V~vhY~G~l~~--G~vFDs-------S~~--rg~p~~ 147 (205)
T COG0545 79 NAAEGKAFLEKNAKEKGVKTLPSGLQYKVLKAGDGAAPKKGDTVTVHYTGTLID--GTVFDS-------SYD--RGQPAE 147 (205)
T ss_pred hHHhHHHHHhhhcccCCceECCCCcEEEEEeccCCCCCCCCCEEEEEEEEecCC--CCcccc-------ccc--cCCCce
Confidence 444566788878888889999999999999999999999999999999999975 999999 464 478999
Q ss_pred EecCCCCchHHHHHHHcCCCCCcEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCceeeEeecCCCCCCceEEEEEEEeEEe
Q 038431 186 FRLGSQDVIPAFEEAVSGMALGGVRRIIVPPEIGYPENDYNKSGPRPTTFSGQRALDFVLRNQGLIDKTLLFDIELLKII 265 (267)
Q Consensus 186 f~vG~g~~i~GleeaL~gMk~Ge~~~v~IPp~layG~~~~~~~~p~p~~~~g~~~~v~vd~NhplAg~tLvfeVeLl~V~ 265 (267)
|.+| ++|+||++||.+|++|++|+++|||++|||.++.+.. ||+ |++|+|+|||++|.
T Consensus 148 f~l~--~vI~Gw~egl~~M~vG~k~~l~IP~~laYG~~g~~g~--Ipp------------------ns~LvFeVeLl~v~ 205 (205)
T COG0545 148 FPLG--GVIPGWDEGLQGMKVGGKRKLTIPPELAYGERGVPGV--IPP------------------NSTLVFEVELLDVK 205 (205)
T ss_pred eecC--CeeehHHHHHhhCCCCceEEEEeCchhccCcCCCCCC--CCC------------------CCeEEEEEEEEecC
Confidence 9996 9999999999999999999999999999999996553 222 99999999999984
No 2
>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=3.1e-25 Score=194.58 Aligned_cols=110 Identities=45% Similarity=0.838 Sum_probs=102.0
Q ss_pred eecCCCeEEEEeecCCCCCCCCCCEEEEEEEEEEeccCCeEEeecccCCCCCccCCCCCceE-EecCCCCchHHHHHHHc
Q 038431 124 TETESGLQYKDLRQGSGPKPKMGETVVVDWDGYTIGYYGRIFEARNKTKGGSFEGDDKDYFK-FRLGSQDVIPAFEEAVS 202 (267)
Q Consensus 124 ~~~~sGl~~~~l~~G~G~~~~~Gd~V~v~Y~~~~~d~~G~~~dst~~~~~~s~~~~~~~p~~-f~vG~g~~i~GleeaL~ 202 (267)
.++++||+|++++.|+|+.+..|+.|.+||.+++.+ +|++||++ | .+.|+. |.+|.+++|+||+.+|.
T Consensus 116 ~tl~~Gl~y~D~~vG~G~~a~~G~rV~v~Y~Gkl~~-~GkvFd~~-------~---~~kp~~~f~lg~g~VIkG~d~gv~ 184 (226)
T KOG0552|consen 116 RTLPGGLRYEDLRVGSGPSAKKGKRVSVRYIGKLKG-NGKVFDSN-------F---GGKPFKLFRLGSGEVIKGWDVGVE 184 (226)
T ss_pred eecCCCcEEEEEEecCCCCCCCCCEEEEEEEEEecC-CCeEeecc-------c---CCCCccccccCCCCCCchHHHhhh
Confidence 678999999999999999999999999999999985 89999994 3 357888 99999999999999999
Q ss_pred CCCCCcEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCceeeEeecCCCCCCceEEEEEEEeEEe
Q 038431 203 GMALGGVRRIIVPPEIGYPENDYNKSGPRPTTFSGQRALDFVLRNQGLIDKTLLFDIELLKII 265 (267)
Q Consensus 203 gMk~Ge~~~v~IPp~layG~~~~~~~~p~p~~~~g~~~~v~vd~NhplAg~tLvfeVeLl~V~ 265 (267)
||++|++|+|+|||++|||.++.+.++| |+||+|+|||+.|.
T Consensus 185 GMkvGGkRrviIPp~lgYg~~g~~~Ipp---------------------nstL~fdVEL~~v~ 226 (226)
T KOG0552|consen 185 GMKVGGKRRVIIPPELGYGKKGVPEIPP---------------------NSTLVFDVELLSVK 226 (226)
T ss_pred hhccCCeeEEEeCccccccccCcCcCCC---------------------CCcEEEEEEEEecC
Confidence 9999999999999999999999876665 99999999999874
No 3
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=4e-25 Score=167.61 Aligned_cols=106 Identities=32% Similarity=0.609 Sum_probs=95.6
Q ss_pred CeEEEEeecCCCC-CCCCCCEEEEEEEEEEeccCCeEEeecccCCCCCccCCCCCceEEecCCCCchHHHHHHHcCCCCC
Q 038431 129 GLQYKDLRQGSGP-KPKMGETVVVDWDGYTIGYYGRIFEARNKTKGGSFEGDDKDYFKFRLGSQDVIPAFEEAVSGMALG 207 (267)
Q Consensus 129 Gl~~~~l~~G~G~-~~~~Gd~V~v~Y~~~~~d~~G~~~dst~~~~~~s~~~~~~~p~~f~vG~g~~i~GleeaL~gMk~G 207 (267)
|+...++.+|+|. .++.||+|++||++.+. ||+.|||++ +.+.|+.|.+|.+++|+||||++..|.+|
T Consensus 2 Gv~~~~i~~Gdg~tfpK~Gqtvt~hYtg~L~--dG~kfDSs~---------dr~kPfkf~IGkgeVIkGwdegv~qmsvG 70 (108)
T KOG0544|consen 2 GVEKQVISPGDGRTFPKKGQTVTVHYTGTLQ--DGKKFDSSR---------DRGKPFKFKIGKGEVIKGWDEGVAQMSVG 70 (108)
T ss_pred CceeEEeeCCCCcccCCCCCEEEEEEEeEec--CCcEeeccc---------ccCCCeeEEecCcceeechhhcchhcccc
Confidence 7889999999995 79999999999999996 499999953 34689999999999999999999999999
Q ss_pred cEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCceeeEeecCCCCCCceEEEEEEEeEEe
Q 038431 208 GVRRIIVPPEIGYPENDYNKSGPRPTTFSGQRALDFVLRNQGLIDKTLLFDIELLKII 265 (267)
Q Consensus 208 e~~~v~IPp~layG~~~~~~~~p~p~~~~g~~~~v~vd~NhplAg~tLvfeVeLl~V~ 265 (267)
|+.++.|+|++|||.++.+...|+ |++|+|||||++|.
T Consensus 71 ekakLti~pd~aYG~~G~p~~Ipp--------------------NatL~FdVEll~v~ 108 (108)
T KOG0544|consen 71 EKAKLTISPDYAYGPRGHPGGIPP--------------------NATLVFDVELLKVN 108 (108)
T ss_pred ccceeeeccccccCCCCCCCccCC--------------------CcEEEEEEEEEecC
Confidence 999999999999999996554443 99999999999873
No 4
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.92 E-value=7.9e-25 Score=183.86 Aligned_cols=116 Identities=22% Similarity=0.259 Sum_probs=94.8
Q ss_pred CCCCCCCEEEEEEEEEEeccCCeEEeecccCCCCCccCCCCCceEEecCCCCchHHHHHHHcCCCCCcEEEEEEcCCCCC
Q 038431 141 PKPKMGETVVVDWDGYTIGYYGRIFEARNKTKGGSFEGDDKDYFKFRLGSQDVIPAFEEAVSGMALGGVRRIIVPPEIGY 220 (267)
Q Consensus 141 ~~~~~Gd~V~v~Y~~~~~d~~G~~~dst~~~~~~s~~~~~~~p~~f~vG~g~~i~GleeaL~gMk~Ge~~~v~IPp~lay 220 (267)
.+++.||.|++||++++. ||++||+| +. .+.|+.|.+|.+++++||+++|.||++|++++|.|||++||
T Consensus 3 m~i~~~~~V~v~Y~~~~~--dG~v~dst-------~~--~~~P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v~ipp~~ay 71 (156)
T PRK15095 3 ESVQSNSAVLVHFTLKLD--DGSTAEST-------RN--NGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFSLEPEAAF 71 (156)
T ss_pred cccCCCCEEEEEEEEEeC--CCCEEEEC-------CC--CCCCEEEEeCCCCccHHHHHHHcCCCCCCEEEEEEChHHhc
Confidence 368899999999999995 59999995 32 26899999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCC------------------CCCCCCcee----------eEeecCCCCCCceEEEEEEEeEEeeC
Q 038431 221 PENDYNKSGPRP------------------TTFSGQRAL----------DFVLRNQGLIDKTLLFDIELLKIIPN 267 (267)
Q Consensus 221 G~~~~~~~~p~p------------------~~~~g~~~~----------v~vd~NhplAg~tLvfeVeLl~V~~~ 267 (267)
|.++...+...| .+.+|++.. |+||+||||||++|.|+|+|++|+++
T Consensus 72 G~~d~~~v~~vp~~~f~~~~~~~~G~~~~~~~~~G~~~~~~V~~i~~~~v~vD~NHPLAGk~L~f~v~i~~v~~a 146 (156)
T PRK15095 72 GVPSPDLIQYFSRRDFMDAGEPEIGAIMLFTAMDGSEMPGVIREINGDSITVDFNHPLAGQTVHFDIEVLEIDPA 146 (156)
T ss_pred CCCChHHEEEecHHHCCcccCCCCCCEEEEECCCCCEEEEEEEEEcCCEEEEECCCcCCCCEEEEEEEEEEeccC
Confidence 997633221111 122343221 77999999999999999999999864
No 5
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=99.91 E-value=5.8e-24 Score=181.97 Aligned_cols=124 Identities=18% Similarity=0.325 Sum_probs=103.9
Q ss_pred ccccccccccCCCceecCCCeEEEEeec--CCCCCCCCCCEEEEEEEEEEeccCCeEEeecccCCCCCccCCCCCceEEe
Q 038431 110 GKDYGKTKMRYPDYTETESGLQYKDLRQ--GSGPKPKMGETVVVDWDGYTIGYYGRIFEARNKTKGGSFEGDDKDYFKFR 187 (267)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~sGl~~~~l~~--G~G~~~~~Gd~V~v~Y~~~~~d~~G~~~dst~~~~~~s~~~~~~~p~~f~ 187 (267)
.+.|.+.+ ....+..+++|++|.++++ |+|..++.||.|++||++++.| |++|+++ ++ ..|+.|.
T Consensus 52 I~~~i~~~-~~~~~~~t~sGl~Y~v~~~~~g~g~~p~~gd~V~v~Y~~~~~d--G~v~~ss-------~~---~~P~~f~ 118 (177)
T TIGR03516 52 IKRIISAD-SIVKYETSQNGFWYYYNQKDTGEGTTPEFGDLVTFEYDIRALD--GDVIYSE-------EE---LGPQTYK 118 (177)
T ss_pred HHHHHHhC-CCCCceECCCccEEEEEEecCCCCCcCCCCCEEEEEEEEEeCC--CCEEEeC-------CC---CCCEEEE
Confidence 34555533 2345788999999999876 6777899999999999999974 9999984 32 3599999
Q ss_pred cCCCCchHHHHHHHcCCCCCcEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCceeeEeecCCCCCCceEEEEEEEeEEee
Q 038431 188 LGSQDVIPAFEEAVSGMALGGVRRIIVPPEIGYPENDYNKSGPRPTTFSGQRALDFVLRNQGLIDKTLLFDIELLKIIP 266 (267)
Q Consensus 188 vG~g~~i~GleeaL~gMk~Ge~~~v~IPp~layG~~~~~~~~p~p~~~~g~~~~v~vd~NhplAg~tLvfeVeLl~V~~ 266 (267)
+|.+++++||+++|.+|++||+++|+|||++|||.++.+.. +|+ |++|+|+|+|++|.+
T Consensus 119 vg~~~vi~Gl~e~L~~Mk~Ge~~~~~iP~~~AYG~~g~~~~--Ipp------------------ns~L~f~IeL~~i~~ 177 (177)
T TIGR03516 119 VDQQDLFSGLRDGLKLMKEGETATFLFPSHKAYGYYGDQNK--IGP------------------NLPIISTVTLLNIKP 177 (177)
T ss_pred eCCcchhHHHHHHHcCCCCCCEEEEEECHHHcCCCCCCCCC--cCc------------------CCcEEEEEEEEEecC
Confidence 99999999999999999999999999999999999986432 332 999999999999975
No 6
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.91 E-value=4.3e-24 Score=186.83 Aligned_cols=125 Identities=31% Similarity=0.534 Sum_probs=110.7
Q ss_pred ccccccccccccCCCceecCCCeEEEEeecCCCCCCCCCCEEEEEEEEEEeccCCeEEeecccCCCCCccCCCCCceEEe
Q 038431 108 LRGKDYGKTKMRYPDYTETESGLQYKDLRQGSGPKPKMGETVVVDWDGYTIGYYGRIFEARNKTKGGSFEGDDKDYFKFR 187 (267)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~sGl~~~~l~~G~G~~~~~Gd~V~v~Y~~~~~d~~G~~~dst~~~~~~s~~~~~~~p~~f~ 187 (267)
.+++.|.+.+.+.+.+.++++|++|+++++|+|..++.||.|.|||++++. ||++||+ +|. .+.|+.|.
T Consensus 82 ~~~~~fl~~~~k~~gv~~t~sGl~y~vi~~G~G~~p~~~d~V~v~Y~g~l~--dG~vfds-------s~~--~g~P~~f~ 150 (206)
T PRK11570 82 AEGVKFLEENAKKEGVNSTESGLQFRVLTQGEGAIPARTDRVRVHYTGKLI--DGTVFDS-------SVA--RGEPAEFP 150 (206)
T ss_pred HHHHHHHHHhhhcCCcEECCCCcEEEEEeCCCCCCCCCCCEEEEEEEEEEC--CCCEEEe-------ccC--CCCCeEEE
Confidence 356788888888999999999999999999999999999999999999996 5999999 453 36799999
Q ss_pred cCCCCchHHHHHHHcCCCCCcEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCceeeEeecCCCCCCceEEEEEEEeEEe
Q 038431 188 LGSQDVIPAFEEAVSGMALGGVRRIIVPPEIGYPENDYNKSGPRPTTFSGQRALDFVLRNQGLIDKTLLFDIELLKII 265 (267)
Q Consensus 188 vG~g~~i~GleeaL~gMk~Ge~~~v~IPp~layG~~~~~~~~p~p~~~~g~~~~v~vd~NhplAg~tLvfeVeLl~V~ 265 (267)
+| .+|+||+++|.+|++|++++|+|||+++||.++.+. .+|+ +++|+|+|||++|.
T Consensus 151 l~--~vipG~~eaL~~M~~G~k~~~~IP~~lAYG~~g~~~--~Ipp------------------~s~Lif~veLl~i~ 206 (206)
T PRK11570 151 VN--GVIPGWIEALTLMPVGSKWELTIPHELAYGERGAGA--SIPP------------------FSTLVFEVELLEIL 206 (206)
T ss_pred ee--chhhHHHHHHcCCCCCCEEEEEECHHHcCCCCCCCC--CcCC------------------CCeEEEEEEEEEEC
Confidence 94 799999999999999999999999999999988642 2332 89999999999984
No 7
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.5e-23 Score=177.28 Aligned_cols=115 Identities=24% Similarity=0.373 Sum_probs=94.6
Q ss_pred CCCCCCEEEEEEEEEEeccCCeEEeecccCCCCCccCCCCCceEEecCCCCchHHHHHHHcCCCCCcEEEEEEcCCCCCC
Q 038431 142 KPKMGETVVVDWDGYTIGYYGRIFEARNKTKGGSFEGDDKDYFKFRLGSQDVIPAFEEAVSGMALGGVRRIIVPPEIGYP 221 (267)
Q Consensus 142 ~~~~Gd~V~v~Y~~~~~d~~G~~~dst~~~~~~s~~~~~~~p~~f~vG~g~~i~GleeaL~gMk~Ge~~~v~IPp~layG 221 (267)
.+++||.|.|||++++.| |++||+|.. ...|+.|.+|.+++++|||+||.||.+|++.+|.|||+.|||
T Consensus 2 ~i~k~~~V~i~Y~~~~~d--g~v~Dtt~e---------~~~P~~~i~G~g~li~glE~al~g~~~Ge~~~V~IpPE~AfG 70 (174)
T COG1047 2 KIEKGDVVSLHYTLKVED--GEVVDTTDE---------NYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPEDAFG 70 (174)
T ss_pred cccCCCEEEEEEEEEecC--CcEEEcccc---------cCCCeEEEecCCCcchhHHHHHhCCCCCceeEEEeCchHhcC
Confidence 578999999999999964 999999521 257999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCC---------------CCCCC----ce--------eeEeecCCCCCCceEEEEEEEeEEeeC
Q 038431 222 ENDYNKSGPRPT---------------TFSGQ----RA--------LDFVLRNQGLIDKTLLFDIELLKIIPN 267 (267)
Q Consensus 222 ~~~~~~~~p~p~---------------~~~g~----~~--------~v~vd~NhplAg~tLvfeVeLl~V~~~ 267 (267)
.++...+...|. .+++. .. .|+||+||||||++|.|+|+|++++++
T Consensus 71 e~~~~lvq~vp~~~F~~~~~~~vGm~~~~~~~~~~~~~~V~~V~~~~V~VDfNHpLAGktL~feveVv~v~~a 143 (174)
T COG1047 71 EYDPDLVQRVPRDEFQGVGELEVGMEVEAEGGDGEIPGVVTEVSGDRVTVDFNHPLAGKTLHFEVEVVEVREA 143 (174)
T ss_pred CCChHHeEEecHHHhCcCCCCCCCcEEEEcCCCceeeEEEEEEcCCEEEEeCCCcCCCCeEEEEEEEEEEecC
Confidence 987543333330 01111 11 178999999999999999999999864
No 8
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=3.4e-23 Score=174.96 Aligned_cols=109 Identities=35% Similarity=0.614 Sum_probs=92.6
Q ss_pred CCCeEEEEeec--CCCCCCCCCCEEEEEEEEEEeccCCeEEeecccCCCCCccCCCCCceEEecCCCCchHHHHHHHcCC
Q 038431 127 ESGLQYKDLRQ--GSGPKPKMGETVVVDWDGYTIGYYGRIFEARNKTKGGSFEGDDKDYFKFRLGSQDVIPAFEEAVSGM 204 (267)
Q Consensus 127 ~sGl~~~~l~~--G~G~~~~~Gd~V~v~Y~~~~~d~~G~~~dst~~~~~~s~~~~~~~p~~f~vG~g~~i~GleeaL~gM 204 (267)
.+++++.+++. .-..+++.||+|.+||++.+. ||++||+ +|.+ ++|++|++|.+++|+|||++|.||
T Consensus 67 ~~~l~I~v~~~p~~C~~kak~GD~l~~HY~g~le--DGt~fdS-------S~~r--g~P~~f~LG~gqVIkG~Dqgl~gM 135 (188)
T KOG0549|consen 67 DEELQIGVLKKPEECPEKAKKGDTLHVHYTGSLE--DGTKFDS-------SYSR--GAPFTFTLGTGQVIKGWDQGLLGM 135 (188)
T ss_pred CCceeEEEEECCccccccccCCCEEEEEEEEEec--CCCEEee-------eccC--CCCEEEEeCCCceeccHhHHhhhh
Confidence 35566666554 245689999999999999886 5999999 5654 689999999999999999999999
Q ss_pred CCCcEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCceeeEeecCCCCCCceEEEEEEEeEEee
Q 038431 205 ALGGVRRIIVPPEIGYPENDYNKSGPRPTTFSGQRALDFVLRNQGLIDKTLLFDIELLKIIP 266 (267)
Q Consensus 205 k~Ge~~~v~IPp~layG~~~~~~~~p~p~~~~g~~~~v~vd~NhplAg~tLvfeVeLl~V~~ 266 (267)
++||+|+++|||+++||+++.+.- +|. +++|+|||||+++.+
T Consensus 136 CvGEkRkl~IPp~LgYG~~G~~~~--IP~------------------~A~LiFdiELv~i~~ 177 (188)
T KOG0549|consen 136 CVGEKRKLIIPPHLGYGERGAPPK--IPG------------------DAVLIFDIELVKIER 177 (188)
T ss_pred CcccceEEecCccccCccCCCCCC--CCC------------------CeeEEEEEEEEEeec
Confidence 999999999999999999996443 332 899999999999875
No 9
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.90 E-value=3.1e-23 Score=179.55 Aligned_cols=114 Identities=21% Similarity=0.213 Sum_probs=94.1
Q ss_pred CCCCCCEEEEEEEEEEeccCCeEEeecccCCCCCccCCCCCceEEecCCCCchHHHHHHHcCCCCCcEEEEEEcCCCCCC
Q 038431 142 KPKMGETVVVDWDGYTIGYYGRIFEARNKTKGGSFEGDDKDYFKFRLGSQDVIPAFEEAVSGMALGGVRRIIVPPEIGYP 221 (267)
Q Consensus 142 ~~~~Gd~V~v~Y~~~~~d~~G~~~dst~~~~~~s~~~~~~~p~~f~vG~g~~i~GleeaL~gMk~Ge~~~v~IPp~layG 221 (267)
+++++++|+|+|++++. +|++|++| + ...|+.|.+|.++++|+||++|.||++|++++|.|||+.|||
T Consensus 2 kI~~~~vV~l~Y~l~~~--dG~v~dst-------~---~~~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v~l~peeAyG 69 (196)
T PRK10737 2 KVAKDLVVSLAYQVRTE--DGVLVDES-------P---VSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYG 69 (196)
T ss_pred ccCCCCEEEEEEEEEeC--CCCEEEec-------C---CCCCeEEEeCCCcchHHHHHHHcCCCCCCEEEEEEChHHhcC
Confidence 57899999999999995 59999995 2 257999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCC------------------CCCCCCce---------eeEeecCCCCCCceEEEEEEEeEEeeC
Q 038431 222 ENDYNKSGPRP------------------TTFSGQRA---------LDFVLRNQGLIDKTLLFDIELLKIIPN 267 (267)
Q Consensus 222 ~~~~~~~~p~p------------------~~~~g~~~---------~v~vd~NhplAg~tLvfeVeLl~V~~~ 267 (267)
.++...+...| ...+|... .|+||+||||||++|.|+|+|++|+++
T Consensus 70 e~d~~lV~~vpr~~F~~~~~l~~G~~~~~~~~~G~~~~~V~ev~~d~V~vD~NHPLAG~~L~F~veV~~vr~a 142 (196)
T PRK10737 70 QYDENLVQRVPKDVFMGVDELQVGMRFLAETDQGPVPVEITAVEDDHVVVDGNHMLAGQNLKFNVEVVAIREA 142 (196)
T ss_pred CCChHHEEEecHHHCCCccCCCCCCEEEEeCCCCcEEEEEEEEcCCEEEEECCCcCCCCEEEEEEEEEEeccC
Confidence 98744333222 11122111 177999999999999999999999864
No 10
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.89 E-value=1.2e-22 Score=184.03 Aligned_cols=126 Identities=33% Similarity=0.640 Sum_probs=111.7
Q ss_pred cccccccccccccCCCceecCCCeEEEEeecCCCCCCCCCCEEEEEEEEEEeccCCeEEeecccCCCCCccCCCCCceEE
Q 038431 107 ALRGKDYGKTKMRYPDYTETESGLQYKDLRQGSGPKPKMGETVVVDWDGYTIGYYGRIFEARNKTKGGSFEGDDKDYFKF 186 (267)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~sGl~~~~l~~G~G~~~~~Gd~V~v~Y~~~~~d~~G~~~dst~~~~~~s~~~~~~~p~~f 186 (267)
..+++.|++.+.+.+.+.++++|++|+++++|+|..++.||.|.|||++++. ||++|++ +|. .+.|+.|
T Consensus 125 ~~~~~~fl~~~~k~~gv~~t~sGl~y~Vi~~G~G~~p~~gD~V~V~Y~g~l~--dG~vfds-------s~~--~g~p~~f 193 (269)
T PRK10902 125 EAKGKKYREKFAKEKGVKTTSTGLLYKVEKEGTGEAPKDSDTVVVNYKGTLI--DGKEFDN-------SYT--RGEPLSF 193 (269)
T ss_pred HHHHHHHHHHhccCCCcEECCCccEEEEEeCCCCCCCCCCCEEEEEEEEEeC--CCCEeec-------ccc--CCCceEE
Confidence 3456789999999999999999999999999999999999999999999986 4999998 343 3679999
Q ss_pred ecCCCCchHHHHHHHcCCCCCcEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCceeeEeecCCCCCCceEEEEEEEeEEee
Q 038431 187 RLGSQDVIPAFEEAVSGMALGGVRRIIVPPEIGYPENDYNKSGPRPTTFSGQRALDFVLRNQGLIDKTLLFDIELLKIIP 266 (267)
Q Consensus 187 ~vG~g~~i~GleeaL~gMk~Ge~~~v~IPp~layG~~~~~~~~p~p~~~~g~~~~v~vd~NhplAg~tLvfeVeLl~V~~ 266 (267)
.+ +.+|+||+++|.+|++|++++|+||++++||..+...++| |++|+|+|+|++|++
T Consensus 194 ~l--~~vipG~~EaL~~Mk~Gek~~l~IP~~laYG~~g~~gIpp---------------------ns~LvfeVeLl~V~~ 250 (269)
T PRK10902 194 RL--DGVIPGWTEGLKNIKKGGKIKLVIPPELAYGKAGVPGIPA---------------------NSTLVFDVELLDVKP 250 (269)
T ss_pred ec--CCcchHHHHHHhcCCCCcEEEEEECchhhCCCCCCCCCCC---------------------CCcEEEEEEEEEecc
Confidence 98 5799999999999999999999999999999987643333 899999999999975
No 11
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=99.79 E-value=9.5e-19 Score=133.86 Aligned_cols=91 Identities=42% Similarity=0.803 Sum_probs=79.3
Q ss_pred CCCCCCEEEEEEEEEEeccCCeEEeecccCCCCCccCCCCCceEEecCCCCchHHHHHHHcCCCCCcEEEEEEcCCCCCC
Q 038431 142 KPKMGETVVVDWDGYTIGYYGRIFEARNKTKGGSFEGDDKDYFKFRLGSQDVIPAFEEAVSGMALGGVRRIIVPPEIGYP 221 (267)
Q Consensus 142 ~~~~Gd~V~v~Y~~~~~d~~G~~~dst~~~~~~s~~~~~~~p~~f~vG~g~~i~GleeaL~gMk~Ge~~~v~IPp~layG 221 (267)
.++.||.|+|||++++. +|++|+++ |. .+.|+.|.+|.+.+++||+++|.+|++|++++|.||++++||
T Consensus 4 ~~~~gd~V~i~y~~~~~--~g~~~~~~-------~~--~~~~~~~~~g~~~~i~g~e~al~~m~~Ge~~~~~vp~~~ayg 72 (94)
T PF00254_consen 4 TPKEGDTVTIHYTGRLE--DGKVFDSS-------YQ--EGEPFEFRLGSGQVIPGLEEALIGMKVGEKREFYVPPELAYG 72 (94)
T ss_dssp SBSTTSEEEEEEEEEET--TSEEEEET-------TT--TTSEEEEETTSSSSSHHHHHHHTTSBTTEEEEEEEEGGGTTT
T ss_pred cCCCCCEEEEEEEEEEC--CCcEEEEe-------ee--cCcceeeeeccCccccchhhhcccccCCCEeeeEeCChhhcC
Confidence 58999999999999986 59999994 32 468999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCceeeEeecCCCCCCceEEEEEEEe
Q 038431 222 ENDYNKSGPRPTTFSGQRALDFVLRNQGLIDKTLLFDIELL 262 (267)
Q Consensus 222 ~~~~~~~~p~p~~~~g~~~~v~vd~NhplAg~tLvfeVeLl 262 (267)
..+..... +|+ +++|+|+|+|+
T Consensus 73 ~~~~~~~~-ip~------------------~~~l~f~Iell 94 (94)
T PF00254_consen 73 EKGLEPPK-IPP------------------NSTLVFEIELL 94 (94)
T ss_dssp TTTBCTTT-BTT------------------TSEEEEEEEEE
T ss_pred ccccCCCC-cCC------------------CCeEEEEEEEC
Confidence 98753322 222 89999999996
No 12
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=7.9e-13 Score=124.26 Aligned_cols=105 Identities=31% Similarity=0.550 Sum_probs=88.1
Q ss_pred CCCeEEEEeecCCC--CCCCCCCEEEEEEEEEEeccCCeEEeecccCCCCCccCCCCCceEEecCC-CCchHHHHHHHcC
Q 038431 127 ESGLQYKDLRQGSG--PKPKMGETVVVDWDGYTIGYYGRIFEARNKTKGGSFEGDDKDYFKFRLGS-QDVIPAFEEAVSG 203 (267)
Q Consensus 127 ~sGl~~~~l~~G~G--~~~~~Gd~V~v~Y~~~~~d~~G~~~dst~~~~~~s~~~~~~~p~~f~vG~-g~~i~GleeaL~g 203 (267)
+.+|..+++++|.| ..|-+|.+|.+||.+++.+ + +|+.+ .-.|.|..|. ..+|.||+.+|..
T Consensus 83 Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~~~--~-~f~~~------------~~~fe~~~Ge~~~vi~Gle~al~~ 147 (397)
T KOG0543|consen 83 DGGIIKRIIREGEGDYSRPNKGAVVKVHLEGELED--G-VFDQR------------ELRFEFGEGEDIDVIEGLEIALRM 147 (397)
T ss_pred CCceEEeeeecCCCCCCCCCCCcEEEEEEEEEECC--c-ceecc------------ccceEEecCCccchhHHHHHHHHh
Confidence 89999999999999 5799999999999999853 4 77762 3457888887 4899999999999
Q ss_pred CCCCcEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCceeeEeecCCCCCCceEEEEEEEeEEe
Q 038431 204 MALGGVRRIIVPPEIGYPENDYNKSGPRPTTFSGQRALDFVLRNQGLIDKTLLFDIELLKII 265 (267)
Q Consensus 204 Mk~Ge~~~v~IPp~layG~~~~~~~~p~p~~~~g~~~~v~vd~NhplAg~tLvfeVeLl~V~ 265 (267)
|++||+..|+|+|+++||+.+..... +|+ +++|.|+|+|+++.
T Consensus 148 M~~GE~a~v~i~~~YayG~~~~~~p~-IPP------------------nA~l~yEVeL~~f~ 190 (397)
T KOG0543|consen 148 MKVGEVALVTIDPKYAYGEEGGEPPL-IPP------------------NATLLYEVELLDFE 190 (397)
T ss_pred cCccceEEEEeCcccccCCCCCCCCC-CCC------------------CceEEEEEEEEeee
Confidence 99999999999999999955432222 222 89999999999987
No 13
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=99.28 E-value=1.4e-11 Score=117.89 Aligned_cols=124 Identities=26% Similarity=0.452 Sum_probs=91.5
Q ss_pred CCCcccccccccccccCCCceecCCCe---------EEEEeecCCCCCCCCCCEEEEEEEEEEeccCCeEEeecccCCCC
Q 038431 104 DMPALRGKDYGKTKMRYPDYTETESGL---------QYKDLRQGSGPKPKMGETVVVDWDGYTIGYYGRIFEARNKTKGG 174 (267)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~sGl---------~~~~l~~G~G~~~~~Gd~V~v~Y~~~~~d~~G~~~dst~~~~~~ 174 (267)
..|.++...|...+++.+....++..+ ++..+.+-....++.||.|+++|+++. +|+.+++
T Consensus 99 v~Pev~l~~y~~i~v~~~~~~vtde~vd~~i~~l~~~~a~~~~~~~~~~~~gD~V~v~~~~~~---dg~~~~~------- 168 (408)
T TIGR00115 99 VYPEVELGDYKGIEVEKPEVEVTDEDVDEELEKLREQNATLVPVERRAAEKGDRVTIDFEGFI---DGEAFEG------- 168 (408)
T ss_pred ecCceecCCCCceEEEeccCCCCHHHHHHHHHHHHHhCCccccccccccCCCCEEEEEEEEEE---CCEECcC-------
Confidence 344445555554444444433333333 122333333446899999999999975 5888876
Q ss_pred CccCCCCCceEEecCCCCchHHHHHHHcCCCCCcEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCceeeEeecCCCCCCce
Q 038431 175 SFEGDDKDYFKFRLGSQDVIPAFEEAVSGMALGGVRRIIVPPEIGYPENDYNKSGPRPTTFSGQRALDFVLRNQGLIDKT 254 (267)
Q Consensus 175 s~~~~~~~p~~f~vG~g~~i~GleeaL~gMk~Ge~~~v~IPp~layG~~~~~~~~p~p~~~~g~~~~v~vd~NhplAg~t 254 (267)
+...++.|.+|.+.+++||+++|.||++|+++.|.+++...|+..+ ++|++
T Consensus 169 ----~~~~~~~~~lg~~~~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~~~-------------------------~~gk~ 219 (408)
T TIGR00115 169 ----GKAENFSLELGSGQFIPGFEEQLVGMKAGEEKEIKVTFPEDYHAEE-------------------------LAGKE 219 (408)
T ss_pred ----CCCCCeEEEECCCCcchhHHHHhCCCCCCCeeEEEecCccccCccc-------------------------CCCCe
Confidence 2357899999999999999999999999999999999988887543 45999
Q ss_pred EEEEEEEeEEee
Q 038431 255 LLFDIELLKIIP 266 (267)
Q Consensus 255 LvfeVeLl~V~~ 266 (267)
+.|+|+|.+|+.
T Consensus 220 ~~f~v~i~~I~~ 231 (408)
T TIGR00115 220 ATFKVTVKEVKE 231 (408)
T ss_pred EEEEEEEEEecc
Confidence 999999999964
No 14
>PRK01490 tig trigger factor; Provisional
Probab=99.24 E-value=3.5e-11 Score=116.07 Aligned_cols=124 Identities=27% Similarity=0.406 Sum_probs=92.0
Q ss_pred cCCCcccccccccccccCCCceecCCCe---------EEEEeecCCCCCCCCCCEEEEEEEEEEeccCCeEEeecccCCC
Q 038431 103 ADMPALRGKDYGKTKMRYPDYTETESGL---------QYKDLRQGSGPKPKMGETVVVDWDGYTIGYYGRIFEARNKTKG 173 (267)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~sGl---------~~~~l~~G~G~~~~~Gd~V~v~Y~~~~~d~~G~~~dst~~~~~ 173 (267)
+..|.++...|....++.+....++..| ++..+.+-+ ..++.||.|+++|+++. +|+.|+.
T Consensus 110 ~v~Pev~l~~y~~i~v~~~~~~vtde~vd~~i~~l~~~~a~~~~~~-~~~~~gD~V~vd~~~~~---~g~~~~~------ 179 (435)
T PRK01490 110 EVYPEVELGDYKGLEVEKPVVEVTDEDVDEELERLRKQFATLVPVE-RPAENGDRVTIDFVGSI---DGEEFEG------ 179 (435)
T ss_pred eecCCcccCCCCceEEEeccCCCCHHHHHHHHHHHHHhCCcccccc-ccCCCCCEEEEEEEEEE---CCEECcC------
Confidence 3445555555555555444444444333 222233223 46899999999999996 5888876
Q ss_pred CCccCCCCCceEEecCCCCchHHHHHHHcCCCCCcEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCceeeEeecCCCCCCc
Q 038431 174 GSFEGDDKDYFKFRLGSQDVIPAFEEAVSGMALGGVRRIIVPPEIGYPENDYNKSGPRPTTFSGQRALDFVLRNQGLIDK 253 (267)
Q Consensus 174 ~s~~~~~~~p~~f~vG~g~~i~GleeaL~gMk~Ge~~~v~IPp~layG~~~~~~~~p~p~~~~g~~~~v~vd~NhplAg~ 253 (267)
+...++.|.+|.+.+++||+++|.||++|+++.|.+++...|+... |||+
T Consensus 180 -----~~~~~~~~~lg~~~~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~~~-------------------------lagk 229 (435)
T PRK01490 180 -----GKAEDFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVTFPEDYHAED-------------------------LAGK 229 (435)
T ss_pred -----CCCCceEEEEcCCCcchhHHHHhCCCCCCCeeEEEecCcccccccc-------------------------CCCC
Confidence 2357899999999999999999999999999999999888886543 5699
Q ss_pred eEEEEEEEeEEee
Q 038431 254 TLLFDIELLKIIP 266 (267)
Q Consensus 254 tLvfeVeLl~V~~ 266 (267)
++.|.|+|.+|+.
T Consensus 230 ~~~f~v~v~~V~~ 242 (435)
T PRK01490 230 EATFKVTVKEVKE 242 (435)
T ss_pred eEEEEEEEEEecc
Confidence 9999999999974
No 15
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=3.7e-11 Score=116.11 Aligned_cols=125 Identities=25% Similarity=0.450 Sum_probs=96.0
Q ss_pred hcCCCcccccccccccccCCCceecCCCe---------EEEEeecCCCCCCCCCCEEEEEEEEEEeccCCeEEeecccCC
Q 038431 102 FADMPALRGKDYGKTKMRYPDYTETESGL---------QYKDLRQGSGPKPKMGETVVVDWDGYTIGYYGRIFEARNKTK 172 (267)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~sGl---------~~~~l~~G~G~~~~~Gd~V~v~Y~~~~~d~~G~~~dst~~~~ 172 (267)
++..|.++..+|...++..+....++..| +...+.+-.+. ++.||.|+|+|.++. ||..|..
T Consensus 109 ~ev~Pev~l~d~~~i~v~~~~~ev~d~dvd~~L~~l~~~~a~~~~~e~~-a~~gD~v~IDf~g~i---Dg~~feg----- 179 (441)
T COG0544 109 VEVYPEVELGDYKGIEVEKPVVEVTDEDVDEELEKLRKRFATLEPVEGA-AENGDRVTIDFEGSV---DGEEFEG----- 179 (441)
T ss_pred EEEeeceecCccccceeecCCcccCHHHHHHHHHHHHHhcCcccccccc-cccCCEEEEEEEEEE---cCeeccC-----
Confidence 34556666666666666666555554443 12233333333 999999999999975 5888766
Q ss_pred CCCccCCCCCceEEecCCCCchHHHHHHHcCCCCCcEEEEEEcCCCCCCCCCCCCCCCCCCCCCCCceeeEeecCCCCCC
Q 038431 173 GGSFEGDDKDYFKFRLGSQDVIPAFEEAVSGMALGGVRRIIVPPEIGYPENDYNKSGPRPTTFSGQRALDFVLRNQGLID 252 (267)
Q Consensus 173 ~~s~~~~~~~p~~f~vG~g~~i~GleeaL~gMk~Ge~~~v~IPp~layG~~~~~~~~p~p~~~~g~~~~v~vd~NhplAg 252 (267)
+....+.|.+|.+.+||||+++|.||+.|+.+.|.+.....|.... |||
T Consensus 180 ------g~ae~~~l~lGs~~fipgFe~~LvG~k~Ge~k~i~vtFP~dy~a~~-------------------------LaG 228 (441)
T COG0544 180 ------GKAENFSLELGSGRFIPGFEDQLVGMKAGEEKDIKVTFPEDYHAEE-------------------------LAG 228 (441)
T ss_pred ------ccccCeEEEEcCCCchhhHHhhhccCcCCCeeEEEEEcccccchhH-------------------------hCC
Confidence 4567899999999999999999999999999999888888887654 679
Q ss_pred ceEEEEEEEeEEee
Q 038431 253 KTLLFDIELLKIIP 266 (267)
Q Consensus 253 ~tLvfeVeLl~V~~ 266 (267)
++..|+|+|..|.+
T Consensus 229 K~a~F~V~vkeVk~ 242 (441)
T COG0544 229 KEATFKVKVKEVKK 242 (441)
T ss_pred CceEEEEEEEEEee
Confidence 99999999999975
No 16
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=3.1e-08 Score=93.55 Aligned_cols=59 Identities=34% Similarity=0.644 Sum_probs=53.1
Q ss_pred ecCCCC-CCCCCCEEEEEEEEEEeccCCeEEeecccCCCCCccCCCCCceEEecCCCCchHHHHHHHcCCCC
Q 038431 136 RQGSGP-KPKMGETVVVDWDGYTIGYYGRIFEARNKTKGGSFEGDDKDYFKFRLGSQDVIPAFEEAVSGMAL 206 (267)
Q Consensus 136 ~~G~G~-~~~~Gd~V~v~Y~~~~~d~~G~~~dst~~~~~~s~~~~~~~p~~f~vG~g~~i~GleeaL~gMk~ 206 (267)
++|+|. .+..||.|.+||++++.| |+.||+|+ +++|+.|.+|.|.+|.||+.++..|+.
T Consensus 1 ~eg~g~~~p~~g~~v~~hytg~l~d--gt~fdss~----------d~~~~~~~lg~g~vi~~~~~gv~tm~~ 60 (397)
T KOG0543|consen 1 KEGTGTETPMTGDKVEVHYTGTLLD--GTKFDSSR----------DGDPFKFDLGKGSVIKGWDLGVATMKK 60 (397)
T ss_pred CCCCCccCCCCCceeEEEEeEEecC--Ceeccccc----------CCCceeeecCCCccccccccccccccc
Confidence 468885 799999999999999975 99999952 278999999999999999999999998
No 17
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=1.4e-05 Score=71.81 Aligned_cols=82 Identities=13% Similarity=0.195 Sum_probs=71.2
Q ss_pred cCCCeEEEEeecCCCC--CCCCCCEEEEEEEEEEeccCCeEEeecccCCCCCccCCCCCceEEecCCCCchHHHHHHHcC
Q 038431 126 TESGLQYKDLRQGSGP--KPKMGETVVVDWDGYTIGYYGRIFEARNKTKGGSFEGDDKDYFKFRLGSQDVIPAFEEAVSG 203 (267)
Q Consensus 126 ~~sGl~~~~l~~G~G~--~~~~Gd~V~v~Y~~~~~d~~G~~~dst~~~~~~s~~~~~~~p~~f~vG~g~~i~GleeaL~g 203 (267)
...||+.+++..|+|+ ...+|..|++||.....++.++++|+|+. .|+|.++++|.---++-||..|..
T Consensus 8 ~~~gv~Kril~~G~g~l~e~~dGTrv~FHfrtl~~~e~~tviDDsRk---------~gkPmeiiiGkkFkL~VwE~il~t 78 (329)
T KOG0545|consen 8 NVEGVKKRILHGGTGELPEFIDGTRVIFHFRTLKCDEERTVIDDSRK---------VGKPMEIIIGKKFKLEVWEIILTT 78 (329)
T ss_pred cchhhhHhhccCCCccCccccCCceEEEEEEecccCcccccccchhh---------cCCCeEEeeccccccHHHHHHHHH
Confidence 3468999999999997 56799999999998887767889999653 378999999998889999999999
Q ss_pred CCCCcEEEEEEcC
Q 038431 204 MALGGVRRIIVPP 216 (267)
Q Consensus 204 Mk~Ge~~~v~IPp 216 (267)
|+++|...|.+.-
T Consensus 79 M~v~EvaqF~~d~ 91 (329)
T KOG0545|consen 79 MRVHEVAQFWCDT 91 (329)
T ss_pred HhhhhHHHhhhhh
Confidence 9999998887654
No 18
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.00011 Score=63.03 Aligned_cols=40 Identities=38% Similarity=0.816 Sum_probs=36.2
Q ss_pred EecCCCCchHHHHHHHcCCCCCcEEEEEEcCCCCCCCCCC
Q 038431 186 FRLGSQDVIPAFEEAVSGMALGGVRRIIVPPEIGYPENDY 225 (267)
Q Consensus 186 f~vG~g~~i~GleeaL~gMk~Ge~~~v~IPp~layG~~~~ 225 (267)
|++|.+.+|+|++++|.||+.|+++++++||+++||..+.
T Consensus 1 ~~~g~~~vi~gm~~~~~g~c~ge~rkvv~pp~l~fg~~~~ 40 (188)
T KOG0549|consen 1 FTLGQGFVIPGMDQALEGMCNGEKRKVVIPPHLGFGEGGR 40 (188)
T ss_pred CcccceEEecCHHHHhhhhhccccceeccCCccccccccc
Confidence 4678899999999999999999999999999999996543
No 19
>PF01346 FKBP_N: Domain amino terminal to FKBP-type peptidyl-prolyl isomerase; InterPro: IPR000774 Peptidyl-prolyl cis-trans isomerase (PPIase) catalyses the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides [, ]. This alpha helical domain is found at the N terminus of proteins belonging to the FKBP-type peptidyl-prolyl cis-trans isomerase(IPR001179 from INTERPRO) family. Peptidyl-prolyl cis-trans isomerase has been shown to accelerate the refolding of several proteins in vitro [, , ]; the FKPB-type enzymes probably act in the folding of extracytoplasmic proteins.; GO: 0006457 protein folding; PDB: 1FD9_A 2VCD_A 3OE2_A 2UZ5_A 3B09_A 1Q6H_B 1Q6I_B 1Q6U_A.
Probab=61.30 E-value=2.8 Score=33.10 Aligned_cols=29 Identities=31% Similarity=0.398 Sum_probs=23.2
Q ss_pred CcccccccccccccCCCceecCCCeEEEE
Q 038431 106 PALRGKDYGKTKMRYPDYTETESGLQYKD 134 (267)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~sGl~~~~ 134 (267)
+..+++.|++.+.+.+++.++++||+|+|
T Consensus 96 ~~~~~~~fla~n~k~~GV~~t~SGLqY~V 124 (124)
T PF01346_consen 96 NKAEGEAFLAENAKKEGVKTTESGLQYKV 124 (124)
T ss_dssp HHHHHHHHHHHHHTSTTEEE-TTS-EEEE
T ss_pred hHHHHHHHHHHHcCCCCCEECCCCCeeeC
Confidence 44567889999999999999999999986
No 20
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=51.27 E-value=99 Score=25.43 Aligned_cols=28 Identities=25% Similarity=0.222 Sum_probs=23.6
Q ss_pred CCCeEEEEeecCCCC------CCCCCCEEEEEEE
Q 038431 127 ESGLQYKDLRQGSGP------KPKMGETVVVDWD 154 (267)
Q Consensus 127 ~sGl~~~~l~~G~G~------~~~~Gd~V~v~Y~ 154 (267)
-.|+.+..++.|++. .+++||.|+++++
T Consensus 43 ~~~~~~~~i~a~n~~~~P~~I~VkaGD~Vtl~vt 76 (135)
T TIGR03096 43 VEGVTVKNIRAFNVLNEPEALVVKKGTPVKVTVE 76 (135)
T ss_pred eCCEEEEEEEeeeeEEcCCEEEECCCCEEEEEEE
Confidence 678999999888763 4889999999885
No 21
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=49.86 E-value=19 Score=20.97 Aligned_cols=17 Identities=18% Similarity=0.399 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHhc
Q 038431 74 RRVLISSIGLLAVALFN 90 (267)
Q Consensus 74 R~~l~~~a~~la~a~~~ 90 (267)
|+++..+++++.+++|+
T Consensus 8 Kkil~~l~a~~~LagCs 24 (25)
T PF08139_consen 8 KKILFPLLALFMLAGCS 24 (25)
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 34555555666677876
No 22
>COG5633 Predicted periplasmic lipoprotein [General function prediction only]
Probab=46.59 E-value=57 Score=26.32 Aligned_cols=21 Identities=24% Similarity=0.093 Sum_probs=14.7
Q ss_pred CCCEEEEEEEEEEeccCCeEE
Q 038431 145 MGETVVVDWDGYTIGYYGRIF 165 (267)
Q Consensus 145 ~Gd~V~v~Y~~~~~d~~G~~~ 165 (267)
...-|.|||..|.-|.+|-..
T Consensus 66 ~q~pv~v~YrfYWYD~~Gle~ 86 (123)
T COG5633 66 RQEPVTVHYRFYWYDAQGLEQ 86 (123)
T ss_pred ccCceEEEEEEEEEcCCCcee
Confidence 455789999999866445443
No 23
>PRK12407 flgH flagellar basal body L-ring protein; Reviewed
Probab=38.21 E-value=83 Score=28.00 Aligned_cols=16 Identities=25% Similarity=0.308 Sum_probs=12.4
Q ss_pred CCCCCCEEEEEEEEEE
Q 038431 142 KPKMGETVVVDWDGYT 157 (267)
Q Consensus 142 ~~~~Gd~V~v~Y~~~~ 157 (267)
.-+.||.|+|...-..
T Consensus 64 A~~VGDiiTV~i~E~t 79 (221)
T PRK12407 64 AYRVGDILTVILDEST 79 (221)
T ss_pred ccCCCCEEEEEEEEec
Confidence 4678999999976543
No 24
>cd01088 MetAP2 Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=33.19 E-value=1.1e+02 Score=27.98 Aligned_cols=54 Identities=17% Similarity=0.203 Sum_probs=36.0
Q ss_pred CCCCCCCCCEEEEEEEEEEeccCCeEEeecccCCCCCccCCCCCceEEecCCC------CchHHHHHHHcCCCCCcEE
Q 038431 139 SGPKPKMGETVVVDWDGYTIGYYGRIFEARNKTKGGSFEGDDKDYFKFRLGSQ------DVIPAFEEAVSGMALGGVR 210 (267)
Q Consensus 139 ~G~~~~~Gd~V~v~Y~~~~~d~~G~~~dst~~~~~~s~~~~~~~p~~f~vG~g------~~i~GleeaL~gMk~Ge~~ 210 (267)
+...+++||.|.++.-+.. +|...|.+ .+|.+|.. ....+++.++..|++|-+.
T Consensus 67 d~~~l~~GDvV~iD~G~~~---dGY~sD~a---------------rT~~vg~~~~~l~ea~~~A~~~ai~~ikPG~~~ 126 (291)
T cd01088 67 DDTVLKEGDVVKLDFGAHV---DGYIADSA---------------FTVDFDPKYDDLLEAAKEALNAAIKEAGPDVRL 126 (291)
T ss_pred CCcccCCCCEEEEEEEEEE---CCEEEEEE---------------EEEecChhHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence 3457999999999986653 57666552 34455432 2346778888888888553
No 25
>COG0024 Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
Probab=33.12 E-value=1.3e+02 Score=27.29 Aligned_cols=54 Identities=19% Similarity=0.230 Sum_probs=37.1
Q ss_pred CCCCCCCCCEEEEEEEEEEeccCCeEEeecccCCCCCccCCCCCceEEecCCCC------ch----HHHHHHHcCCCCCc
Q 038431 139 SGPKPKMGETVVVDWDGYTIGYYGRIFEARNKTKGGSFEGDDKDYFKFRLGSQD------VI----PAFEEAVSGMALGG 208 (267)
Q Consensus 139 ~G~~~~~Gd~V~v~Y~~~~~d~~G~~~dst~~~~~~s~~~~~~~p~~f~vG~g~------~i----~GleeaL~gMk~Ge 208 (267)
+-..+++||.|.|+..... ||-.-|+ -.+|.+|... ++ .+|+.++..+++|-
T Consensus 83 d~~vlk~GDiv~IDvg~~~---dG~~~Ds---------------a~T~~vg~~~~~~~~~L~~~t~eal~~~I~~vkpG~ 144 (255)
T COG0024 83 DKKVLKEGDIVKIDVGAHI---DGYIGDT---------------AITFVVGEVSDEDAKRLLEATKEALYAGIEAVKPGA 144 (255)
T ss_pred CCcccCCCCEEEEEEEEEE---CCeeeeE---------------EEEEECCCCChHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 3457999999999988775 5766665 4567777321 22 46777777788875
Q ss_pred EE
Q 038431 209 VR 210 (267)
Q Consensus 209 ~~ 210 (267)
+.
T Consensus 145 ~l 146 (255)
T COG0024 145 RL 146 (255)
T ss_pred CH
Confidence 43
No 26
>PF04530 Viral_Beta_CD: Viral Beta C/D like family; InterPro: IPR007617 This is a family of ssRNA positive-strand viral proteins. Conserved region is found in the Beta C and Beta D transcripts.
Probab=33.10 E-value=92 Score=25.21 Aligned_cols=19 Identities=5% Similarity=-0.067 Sum_probs=10.6
Q ss_pred CCCCCCCC---CCCCCCCCCcc
Q 038431 44 PQSLHHPH---QFNGSSSYGEI 62 (267)
Q Consensus 44 ~~~c~~~~---~~~~~~~~~~~ 62 (267)
+..|+|++ +...+..++..
T Consensus 4 s~~C~CsdC~ws~~~~~~t~~~ 25 (122)
T PF04530_consen 4 SSGCCCSDCQWSGSPTVDTGSQ 25 (122)
T ss_pred CCCCcCCcccCCCCCccccccc
Confidence 46788888 33333444444
No 27
>PF10518 TAT_signal: TAT (twin-arginine translocation) pathway signal sequence; InterPro: IPR019546 The twin-arginine translocation (Tat) pathway serves the role of transporting folded proteins across energy-transducing membranes []. Homologues of the genes that encode the transport apparatus occur in archaea, bacteria, chloroplasts, and plant mitochondria []. In bacteria, the Tat pathway catalyses the export of proteins from the cytoplasm across the inner/cytoplasmic membrane. In chloroplasts, the Tat components are found in the thylakoid membrane and direct the import of proteins from the stroma. The Tat pathway acts separately from the general secretory (Sec) pathway, which transports proteins in an unfolded state []. It is generally accepted that the primary role of the Tat system is to translocate fully folded proteins across membranes. An example of proteins that need to be exported in their 3D conformation are redox proteins that have acquired complex multi-atom cofactors in the bacterial cytoplasm (or the chloroplast stroma or mitochondrial matrix). They include hydrogenases, formate dehydrogenases, nitrate reductases, trimethylamine N-oxide (TMAO) reductases and dimethyl sulphoxide (DMSO) reductases [, ]. The Tat system can also export whole heteroligomeric complexes in which some proteins have no Tat signal. This is the case of the DMSO reductase or formate dehydrogenase complexes. But there are also other cases where the physiological rationale for targeting a protein to the Tat signal is less obvious. Indeed, there are examples of homologous proteins that are in some cases targeted to the Tat pathway and in other cases to the Sec apparatus. Some examples are: copper nitrite reductases, flavin domains of flavocytochrome c and N-acetylmuramoyl-L-alanine amidases []. In halophilic archaea such as Halobacterium almost all secreted proteins appear to be Tat targeted. It has been proposed to be a response to the difficulties these organisms would otherwise face in successfully folding proteins extracellularly at high ionic strength []. The Tat signal peptide consists of three motifs: the positively charged N-terminal motif, the hydrophobic region and the C-terminal region that generally ends with a consensus short motif (A-x-A) specifying cleavage by signal peptidase. Sequence analysis revealed that signal peptides capable of targeting the Tat protein contain the consensus sequence [ST]-R-R-x-F-L-K. The nearly invariant twin-arginine gave rise to the pathway's name. In addition the h-region of Tat signal peptides is typically less hydrophobic than that of Sec-specific signal peptides [, ].
Probab=31.87 E-value=66 Score=18.64 Aligned_cols=20 Identities=25% Similarity=0.320 Sum_probs=13.3
Q ss_pred hhhHHHHHHHHHHHHHHHhc
Q 038431 71 VERRRVLISSIGLLAVALFN 90 (267)
Q Consensus 71 ~~RR~~l~~~a~~la~a~~~ 90 (267)
.+||.+|-..+++.++++..
T Consensus 2 ~sRR~fLk~~~a~~a~~~~~ 21 (26)
T PF10518_consen 2 LSRRQFLKGGAAAAAAAALG 21 (26)
T ss_pred CcHHHHHHHHHHHHHHHHhc
Confidence 46888887776666555544
No 28
>PHA02122 hypothetical protein
Probab=30.47 E-value=89 Score=21.89 Aligned_cols=21 Identities=19% Similarity=0.450 Sum_probs=16.6
Q ss_pred CCCCEEEEEEEEEEeccCCeEEee
Q 038431 144 KMGETVVVDWDGYTIGYYGRIFEA 167 (267)
Q Consensus 144 ~~Gd~V~v~Y~~~~~d~~G~~~ds 167 (267)
..||.|.++|.... +|++|-.
T Consensus 39 ~~gd~v~vn~e~~~---ng~l~i~ 59 (65)
T PHA02122 39 DDGDEVIVNFELVV---NGKLIIN 59 (65)
T ss_pred cCCCEEEEEEEEEE---CCEEEEe
Confidence 36999999999886 6888743
No 29
>TIGR00501 met_pdase_II methionine aminopeptidase, type II. Methionine aminopeptidase (map) is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. The role of this protein in general is to produce the mature amino end of cytosolic proteins by removing the N-terminal methionine. This model describes type II, among which the eukaryotic members typically have an N-terminal extension not present in archaeal members. It can act cotranslationally. The enzyme from rat has been shown to associate with translation initiation factor 2 (IF-2) and may have a role in translational regulation.
Probab=30.27 E-value=1.3e+02 Score=27.51 Aligned_cols=53 Identities=23% Similarity=0.218 Sum_probs=34.9
Q ss_pred CCCCCCCCCEEEEEEEEEEeccCCeEEeecccCCCCCccCCCCCceEEecCCC------CchHHHHHHHcCCCCCcE
Q 038431 139 SGPKPKMGETVVVDWDGYTIGYYGRIFEARNKTKGGSFEGDDKDYFKFRLGSQ------DVIPAFEEAVSGMALGGV 209 (267)
Q Consensus 139 ~G~~~~~Gd~V~v~Y~~~~~d~~G~~~dst~~~~~~s~~~~~~~p~~f~vG~g------~~i~GleeaL~gMk~Ge~ 209 (267)
+...+++||.|.|++-+.. +|-..|. ..+|.+|.. .+..+++.++.-|++|-+
T Consensus 71 d~~~l~~GDvV~iD~G~~~---dGY~aD~---------------arT~~vG~~~~~l~~a~~~A~~aai~~~kPGv~ 129 (295)
T TIGR00501 71 DKTVFKDGDVVKLDLGAHV---DGYIADT---------------AITVDLGDQYDNLVKAAKDALYTAIKEIRAGVR 129 (295)
T ss_pred cCccCCCCCEEEEEEeEEE---CCEEEEE---------------EEEEEeCcHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3457899999999986653 5766555 234555532 134567777778888854
No 30
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=29.06 E-value=1.4e+02 Score=30.41 Aligned_cols=15 Identities=20% Similarity=0.202 Sum_probs=11.7
Q ss_pred CCCCCCEEEEEEEEE
Q 038431 142 KPKMGETVVVDWDGY 156 (267)
Q Consensus 142 ~~~~Gd~V~v~Y~~~ 156 (267)
.+++||.|.|+++-.
T Consensus 79 r~~~Gd~v~v~v~N~ 93 (587)
T TIGR01480 79 RWREGDTVRLRVTNT 93 (587)
T ss_pred EEECCCEEEEEEEcC
Confidence 478999999987543
No 31
>PRK08671 methionine aminopeptidase; Provisional
Probab=27.85 E-value=1.5e+02 Score=27.06 Aligned_cols=52 Identities=21% Similarity=0.192 Sum_probs=34.3
Q ss_pred CCCCCCCCEEEEEEEEEEeccCCeEEeecccCCCCCccCCCCCceEEecCCC------CchHHHHHHHcCCCCCcE
Q 038431 140 GPKPKMGETVVVDWDGYTIGYYGRIFEARNKTKGGSFEGDDKDYFKFRLGSQ------DVIPAFEEAVSGMALGGV 209 (267)
Q Consensus 140 G~~~~~Gd~V~v~Y~~~~~d~~G~~~dst~~~~~~s~~~~~~~p~~f~vG~g------~~i~GleeaL~gMk~Ge~ 209 (267)
...+++||.|.+++-+.. +|-..|. ..+|.+|.. ....+++.++..+++|-+
T Consensus 69 ~~~l~~GDvV~iD~G~~~---dGY~aD~---------------arT~~vG~~~~~l~~a~~~a~~aai~~ikpG~~ 126 (291)
T PRK08671 69 ERVFPEGDVVKLDLGAHV---DGYIADT---------------AVTVDLGGKYEDLVEASEEALEAAIEVVRPGVS 126 (291)
T ss_pred CcccCCCCEEEEEEeEEE---CCEEEEE---------------EEEEEeChhHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 456899999999986653 5766655 234556532 134567777778888844
No 32
>cd01090 Creatinase Creatine amidinohydrolase. E.C.3.5.3.3. Hydrolyzes creatine to sarcosine and urea.
Probab=27.52 E-value=1.7e+02 Score=25.49 Aligned_cols=53 Identities=11% Similarity=0.042 Sum_probs=34.3
Q ss_pred CCCCCCCCEEEEEEEEEEeccCCeEEeecccCCCCCccCCCCCceEEecCCC---------CchHHHHHHHcCCCCCcEE
Q 038431 140 GPKPKMGETVVVDWDGYTIGYYGRIFEARNKTKGGSFEGDDKDYFKFRLGSQ---------DVIPAFEEAVSGMALGGVR 210 (267)
Q Consensus 140 G~~~~~Gd~V~v~Y~~~~~d~~G~~~dst~~~~~~s~~~~~~~p~~f~vG~g---------~~i~GleeaL~gMk~Ge~~ 210 (267)
...+++||.|.+++-+.. +|-..|. ..+|.+|.. .+..+++.++..+|+|-+.
T Consensus 74 ~r~l~~GD~v~~d~g~~~---~GY~ad~---------------~RT~~vG~~~~~~~~~~~~~~ea~~~~~~~~rpG~~~ 135 (228)
T cd01090 74 NRKVQRGDILSLNCFPMI---AGYYTAL---------------ERTLFLDEVSDAHLKIWEANVAVHERGLELIKPGARC 135 (228)
T ss_pred CcccCCCCEEEEEEeEEE---CCEeeee---------------EEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCCcH
Confidence 357899999999987654 3554443 234556532 2346677777788888553
No 33
>PRK12696 flgH flagellar basal body L-ring protein; Reviewed
Probab=27.43 E-value=1.6e+02 Score=26.42 Aligned_cols=17 Identities=18% Similarity=0.286 Sum_probs=13.0
Q ss_pred CCCCCCCEEEEEEEEEE
Q 038431 141 PKPKMGETVVVDWDGYT 157 (267)
Q Consensus 141 ~~~~~Gd~V~v~Y~~~~ 157 (267)
..-..||.|+|...-..
T Consensus 64 RA~~VGDivTV~i~E~~ 80 (236)
T PRK12696 64 RARRVGDIVLVKIVENS 80 (236)
T ss_pred ccccCCCEEEEEEEEee
Confidence 35678999999876554
No 34
>cd01089 PA2G4-like Related to aminopepdidase M, this family contains proliferation-associated protein 2G4. Family members have been implicated in cell cycle control.
Probab=27.03 E-value=2.4e+02 Score=24.50 Aligned_cols=53 Identities=21% Similarity=0.174 Sum_probs=34.1
Q ss_pred CCCCCCCCEEEEEEEEEEeccCCeEEeecccCCCCCccCCCCCceEEecCCC-------C-------chHHHHHHHcCCC
Q 038431 140 GPKPKMGETVVVDWDGYTIGYYGRIFEARNKTKGGSFEGDDKDYFKFRLGSQ-------D-------VIPAFEEAVSGMA 205 (267)
Q Consensus 140 G~~~~~Gd~V~v~Y~~~~~d~~G~~~dst~~~~~~s~~~~~~~p~~f~vG~g-------~-------~i~GleeaL~gMk 205 (267)
...+++||.|.|++-+.. +|-.-|-+ .+|.+|.. . ...+.+.++..|+
T Consensus 80 ~~~l~~Gd~v~iD~g~~~---~GY~sD~t---------------RT~~vG~~~~~~~~~~~~~~~~~~~ea~~~~~~~~k 141 (228)
T cd01089 80 TYTLKDGDVVKIDLGCHI---DGYIAVVA---------------HTIVVGAEAETPVTGKKADVIAAAHYALEAALRLLR 141 (228)
T ss_pred CcccCCCCEEEEEEEEEE---CCEEEEEE---------------EEEEeCCcCccccchHHHHHHHHHHHHHHHHHHHhC
Confidence 456899999999987664 46555442 23444432 1 1355677788888
Q ss_pred CCcEE
Q 038431 206 LGGVR 210 (267)
Q Consensus 206 ~Ge~~ 210 (267)
+|-+.
T Consensus 142 pG~~~ 146 (228)
T cd01089 142 PGNQN 146 (228)
T ss_pred CCCcH
Confidence 88653
No 35
>PF01272 GreA_GreB: Transcription elongation factor, GreA/GreB, C-term; InterPro: IPR001437 Bacterial proteins greA and greB are necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. Arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked DNA/RNA/ polymerase ternary complexes. Cleavage of the nascent transcript by cleavage factors, such as greA or greB, allows the resumption of elongation from the new 3' terminus [, ]. Escherichia coli GreA and GreB are sequence homologues and have homologues in every known bacterial genome []. GreA induces cleavage two or three nucleotides behind the terminus and can only prevent the formation of arrested complexes while greB releases longer sequences up to eighteen nucleotides in length and can rescue preexisting arrested complexes. These functional differences correlate with a distinctive structural feature, the distribution of positively charged residues on one face of the N-terminal coiled coil. Remarkably, despite close functional similarity, the prokaryotic Gre factors have no sequence or structural similarity with eukaryotic TFIIS. ; GO: 0003677 DNA binding, 0032784 regulation of transcription elongation, DNA-dependent; PDB: 2P4V_E 2ETN_B 3BMB_B 2PN0_D 1GRJ_A 2EUL_C 3AOH_Y 3AOI_X 2F23_A.
Probab=26.07 E-value=69 Score=23.12 Aligned_cols=23 Identities=17% Similarity=0.283 Sum_probs=17.7
Q ss_pred hHHHHHHHcCCCCCcEEEEEEcC
Q 038431 194 IPAFEEAVSGMALGGVRRIIVPP 216 (267)
Q Consensus 194 i~GleeaL~gMk~Ge~~~v~IPp 216 (267)
..-|-.||+|.++|+...+.+|.
T Consensus 43 ~SPLG~ALlG~~~Gd~v~~~~~~ 65 (77)
T PF01272_consen 43 DSPLGKALLGKKVGDEVEVELPG 65 (77)
T ss_dssp TSHHHHHHTT-BTT-EEEEEETT
T ss_pred cCHHHHHhcCCCCCCEEEEEeCC
Confidence 34688999999999999999863
No 36
>PF10399 UCR_Fe-S_N: Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal; InterPro: IPR019470 This entry represents the TAT-signal region found in the iron-sulphur subunit of Ubiquinol-cytochrome C reductase (also known as the cytochrome bc1 complex). This enzymex is an oligomeric membrane protein complex that is a component of respiratory and photosynthetic electron transfer chains. It couples the transfer of electrons from ubiquinol to cytochrome c with the generation of a protein gradient across the membrane []. This entry is associated with IPR017941 from INTERPRO, IPR004192 from INTERPRO and IPR015248 from INTERPRO. ; GO: 0008121 ubiquinol-cytochrome-c reductase activity, 0055114 oxidation-reduction process; PDB: 1ZRT_R 2QJY_R 2FYN_L 2QJK_O 2QJP_I 2YIU_F.
Probab=25.01 E-value=79 Score=20.54 Aligned_cols=19 Identities=16% Similarity=0.069 Sum_probs=10.4
Q ss_pred hhhhHHHHHHHHHHHHHHH
Q 038431 70 VVERRRVLISSIGLLAVAL 88 (267)
Q Consensus 70 ~~~RR~~l~~~a~~la~a~ 88 (267)
-.+||.+|..+.++++..+
T Consensus 8 ~~~RRdFL~~at~~~gavG 26 (41)
T PF10399_consen 8 DPTRRDFLTIATSAVGAVG 26 (41)
T ss_dssp --HHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHH
Confidence 3568888766555554433
No 37
>PTZ00053 methionine aminopeptidase 2; Provisional
Probab=24.73 E-value=1.2e+02 Score=30.04 Aligned_cols=52 Identities=12% Similarity=0.191 Sum_probs=34.5
Q ss_pred CCCCCCCCEEEEEEEEEEeccCCeEEeecccCCCCCccCCCCCceEEecCCC------CchHHHHHHHcCCCCCcE
Q 038431 140 GPKPKMGETVVVDWDGYTIGYYGRIFEARNKTKGGSFEGDDKDYFKFRLGSQ------DVIPAFEEAVSGMALGGV 209 (267)
Q Consensus 140 G~~~~~Gd~V~v~Y~~~~~d~~G~~~dst~~~~~~s~~~~~~~p~~f~vG~g------~~i~GleeaL~gMk~Ge~ 209 (267)
...+++||.|.|++-+.. +|...|.+ .+|.+|.. .+..+++.||.-+++|-+
T Consensus 231 ~~vLk~GDvVkID~G~~v---dGYiaD~A---------------rTv~vg~~~~~L~eAv~eA~~aaI~~~kpGv~ 288 (470)
T PTZ00053 231 KTVLTYDDVCKLDFGTHV---NGRIIDCA---------------FTVAFNPKYDPLLQATKDATNTGIKEAGIDVR 288 (470)
T ss_pred CcEecCCCeEEEEEeEEE---CCEEEeEE---------------EEEEeCHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 456899999999998764 58877762 33444421 234566777777777754
No 38
>PLN00059 PsbP domain-containing protein 1; Provisional
Probab=24.62 E-value=2.7e+02 Score=25.67 Aligned_cols=63 Identities=22% Similarity=0.266 Sum_probs=29.3
Q ss_pred cccCCcccccccccCCCCceEEeecCCCCCCCCCCCCCCCCCCCcccc---ccccchhhhHHHHHHH
Q 038431 17 AIKPSSSVRHRFHSKNNTPLLFHRQLAPQSLHHPHQFNGSSSYGEISH---TSNRQVVERRRVLISS 80 (267)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~c~~~~~~~~~~~~~~~~~---~~~~~~~~RR~~l~~~ 80 (267)
..||.+-...|- --..-||||.|+....+-+-+--+.-..+.-...+ ......+.||.+++..
T Consensus 21 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~ 86 (286)
T PLN00059 21 SCKPTSLASSRS-LVTDFHLLFSRPISSGPKHQSAKSAKPDSPVAINCLTDAKQVCAVGRRKSMMMG 86 (286)
T ss_pred CcCccccccchh-hhhhhhhhccccccCCcccccccccCCCCCeeeecccchhhhhhhhhhhhhHHH
Confidence 356654333221 12334699999887766554433222222111111 1123355677775443
No 39
>TIGR00495 crvDNA_42K 42K curved DNA binding protein. Proteins identified by this model have been identified in a number of species as a nuclear (but not nucleolar) protein with a cell cycle dependence. Various names given to members of this family have included cell cycle protein p38-2G4, DNA-binding protein GBP16, and proliferation-associated protein 1. This protein is closely related to methionine aminopeptidase, a cobolt-binding protein.
Probab=23.28 E-value=1.9e+02 Score=27.73 Aligned_cols=52 Identities=23% Similarity=0.140 Sum_probs=35.3
Q ss_pred CCCCCCCEEEEEEEEEEeccCCeEEeecccCCCCCccCCCCCceEEecCCC--------------CchHHHHHHHcCCCC
Q 038431 141 PKPKMGETVVVDWDGYTIGYYGRIFEARNKTKGGSFEGDDKDYFKFRLGSQ--------------DVIPAFEEAVSGMAL 206 (267)
Q Consensus 141 ~~~~~Gd~V~v~Y~~~~~d~~G~~~dst~~~~~~s~~~~~~~p~~f~vG~g--------------~~i~GleeaL~gMk~ 206 (267)
..+++||.|.|++-+.. ||-..|. -.+|.+|.. ....+++.++..|++
T Consensus 99 ~~Lk~GDvVkIDlG~~i---dGY~aD~---------------arTv~vG~~~~~~~t~~~~~l~~aa~~A~~aai~~vkP 160 (389)
T TIGR00495 99 YILKEGDVVKIDLGCHI---DGFIALV---------------AHTFVVGVAQEEPVTGRKADVIAAAHLAAEAALRLVKP 160 (389)
T ss_pred cCcCCCCEEEEEEEEEE---CCEEEEE---------------EEEEEECCcccccCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 46999999999987764 5766665 234556521 122567788888888
Q ss_pred CcEE
Q 038431 207 GGVR 210 (267)
Q Consensus 207 Ge~~ 210 (267)
|-+.
T Consensus 161 G~~~ 164 (389)
T TIGR00495 161 GNTN 164 (389)
T ss_pred CCcH
Confidence 8543
No 40
>PRK09810 entericidin A; Provisional
Probab=22.91 E-value=94 Score=20.30 Aligned_cols=18 Identities=11% Similarity=0.139 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHhcc
Q 038431 74 RRVLISSIGLLAVALFNA 91 (267)
Q Consensus 74 R~~l~~~a~~la~a~~~~ 91 (267)
|.+++++++++++++|..
T Consensus 4 k~~~l~~~~~~~L~aCNT 21 (41)
T PRK09810 4 RLIVLVLLASTLLTGCNT 21 (41)
T ss_pred HHHHHHHHHHHHHhhhhh
Confidence 334444445556777764
No 41
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=22.47 E-value=1.8e+02 Score=24.26 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=19.3
Q ss_pred hHHHHHHHcCCCCCcEEEEEEcC
Q 038431 194 IPAFEEAVSGMALGGVRRIIVPP 216 (267)
Q Consensus 194 i~GleeaL~gMk~Ge~~~v~IPp 216 (267)
..-|-.||+|.++|+.+.+..|.
T Consensus 122 ~SPlG~ALlGk~vGD~v~v~~p~ 144 (158)
T PRK05892 122 DSPLGQALAGHQAGDTVTYSTPQ 144 (158)
T ss_pred CCHHHHHHhCCCCCCEEEEEcCC
Confidence 34678999999999999988764
No 42
>PF13627 LPAM_2: Prokaryotic lipoprotein-attachment site
Probab=22.02 E-value=70 Score=18.43 Aligned_cols=15 Identities=20% Similarity=0.014 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHhcc
Q 038431 77 LISSIGLLAVALFNA 91 (267)
Q Consensus 77 l~~~a~~la~a~~~~ 91 (267)
++.++.++++++|+-
T Consensus 3 ~~~~~~~~~LsgCG~ 17 (24)
T PF13627_consen 3 LLLLALALALSGCGQ 17 (24)
T ss_pred HHHHHHHHHHHhccc
Confidence 344455666777774
No 43
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=21.57 E-value=3.1e+02 Score=22.83 Aligned_cols=24 Identities=13% Similarity=0.180 Sum_probs=20.0
Q ss_pred chHHHHHHHcCCCCCcEEEEEEcC
Q 038431 193 VIPAFEEAVSGMALGGVRRIIVPP 216 (267)
Q Consensus 193 ~i~GleeaL~gMk~Ge~~~v~IPp 216 (267)
+..-+-.||+|.++|+.+.+.+|.
T Consensus 119 ~~SPlG~ALlGk~~GD~v~v~~p~ 142 (156)
T TIGR01461 119 IDSPLARALLKKEVGDEVVVNTPA 142 (156)
T ss_pred CCCHHHHHHcCCCCCCEEEEEcCC
Confidence 345688999999999999998764
No 44
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=20.75 E-value=3.4e+02 Score=20.65 Aligned_cols=8 Identities=38% Similarity=0.430 Sum_probs=4.0
Q ss_pred hHHHHHHH
Q 038431 73 RRRVLISS 80 (267)
Q Consensus 73 RR~~l~~~ 80 (267)
||.+++.+
T Consensus 3 RRlwiLsl 10 (100)
T PF05984_consen 3 RRLWILSL 10 (100)
T ss_pred hhhHHHHH
Confidence 55555443
Done!