BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038432
(602 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 68.6 bits (166), Expect = 1e-11, Method: Composition-based stats.
Identities = 51/170 (30%), Positives = 81/170 (47%), Gaps = 19/170 (11%)
Query: 330 NMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASN 389
++ LL A G + L+ D + D +G TPLH+AA GH E V VLLKH ++
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGAD 72
Query: 390 VHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDL- 448
V+ R D +G T L A + H I +L A + A L
Sbjct: 73 VNAR-----------------DTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLT 115
Query: 449 -LCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFL 497
L A R + ++E L+K+G +V+++D+ G+TA +I++ N ++ L
Sbjct: 116 PLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 66.2 bits (160), Expect = 5e-11, Method: Composition-based stats.
Identities = 51/171 (29%), Positives = 81/171 (47%), Gaps = 21/171 (12%)
Query: 330 NMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASN 389
++ LL A G + L+ D + D G+TPLH+AA KGH E V VLLKH ++
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGAD 72
Query: 390 VHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTA---ISDPYTAG 446
V+ D + G+T L A H I +L A +D Y
Sbjct: 73 VNAADKM-----------------GDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFT 115
Query: 447 DLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFL 497
L A+ + ++E L+KYG +V+++D+ G+TA +I++ N ++ L
Sbjct: 116 PLHLAADA-GHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 30/108 (27%), Positives = 55/108 (50%), Gaps = 13/108 (12%)
Query: 452 AEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCE 511
A + + ++E L+K+G +V++ D+ G T + +A ++E+V L+ NG+DV +
Sbjct: 54 AAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYG 113
Query: 512 FSSTNLNDMLQKREIGHRITVHDDNSTQNEVLLKKLEIIDFEAKEGKS 559
F+ +L + GH V EVLLK ++ + K GK+
Sbjct: 114 FTPLHL-----AADAGHLEIV--------EVLLKYGADVNAQDKFGKT 148
Score = 33.5 bits (75), Expect = 0.32, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 31/46 (67%)
Query: 464 LVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANK 509
L+ G +V+++D G+T + +A + ++E+V L+ +G+DV A+K
Sbjct: 33 LMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADK 78
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 65.9 bits (159), Expect = 6e-11, Method: Composition-based stats.
Identities = 49/170 (28%), Positives = 79/170 (46%), Gaps = 19/170 (11%)
Query: 330 NMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASN 389
++ LL A G + L+ D + D+ G TPLH+AA GH E V VLLK+ ++
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGAD 72
Query: 390 VHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRIL--YHCTAISDPYTAGD 447
V+ LD +G+T L A H I +L Y +D
Sbjct: 73 VN-----------------ALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGST 115
Query: 448 LLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFL 497
L A + ++E L+KYG +V+++D+ G+TA +I++ N ++ L
Sbjct: 116 PLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 47/154 (30%), Positives = 74/154 (48%), Gaps = 22/154 (14%)
Query: 285 LIEAMQSKQEDNVSIL--------------KNFLQQHKKLKDLNIGDLIAESGEEDG--D 328
L+EA ++ Q+D V IL L ++ L I +++ ++G + D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALD 77
Query: 329 PNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHAS 388
+ S L A G+ ++ LLK D + D+ G TPLH+AA GH E V VLLK+ +
Sbjct: 78 FSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGA 137
Query: 389 NVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAI 422
+V+ +D ++DI I NGN L E +
Sbjct: 138 DVNAQDK---FGKTAFDISI---DNGNEDLAEIL 165
Score = 34.3 bits (77), Expect = 0.20, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 13/82 (15%)
Query: 464 LVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQK 523
L+ G +V+++D +G T + +A ++E+V L+ NG+DV N +FS + + K
Sbjct: 33 LMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADV---NALDFSGSTPLHLAAK 89
Query: 524 REIGHRITVHDDNSTQNEVLLK 545
R GH V EVLLK
Sbjct: 90 R--GHLEIV--------EVLLK 101
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 65.1 bits (157), Expect = 1e-10, Method: Composition-based stats.
Identities = 57/213 (26%), Positives = 89/213 (41%), Gaps = 65/213 (30%)
Query: 285 LIEAMQSKQEDNVSILKNFLQQHKKLKDLNIGDLIAESGEEDGDPNMSVNLLTVASTGNA 344
L+EA ++ Q+D V IL D+N D + + L A TG+
Sbjct: 18 LLEAARAGQDDEVRILM------ANGADVNATDWLGHT-----------PLHLAAKTGHL 60
Query: 345 AFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSY 404
++ LLK D + D+ G TPLH+AA GH E V VLLKH ++V+ +DY
Sbjct: 61 EIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDY--------- 111
Query: 405 DIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEEL 464
G T L A H + ++E L
Sbjct: 112 --------EGFTPLHLAAYDGH-------------------------------LEIVEVL 132
Query: 465 VKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFL 497
+KYG +V+++D+ G+TA +I++ N ++ L
Sbjct: 133 LKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 29/108 (26%), Positives = 54/108 (50%), Gaps = 13/108 (12%)
Query: 452 AEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCE 511
A K + ++E L+KYG +V++ D +G T + +A ++E+V L+ +G+DV +
Sbjct: 54 AAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEG 113
Query: 512 FSSTNLNDMLQKREIGHRITVHDDNSTQNEVLLKKLEIIDFEAKEGKS 559
F+ +L +D + EVLLK ++ + K GK+
Sbjct: 114 FTPLHL-------------AAYDGHLEIVEVLLKYGADVNAQDKFGKT 148
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 64.7 bits (156), Expect = 1e-10, Method: Composition-based stats.
Identities = 50/170 (29%), Positives = 83/170 (48%), Gaps = 19/170 (11%)
Query: 330 NMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASN 389
++ LL A G + L+ D + D+ G TPLH+AA+ GH E V VLLKH ++
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGAD 72
Query: 390 VHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILY-HCTAISDPYTAGDL 448
V+ +D+ G+T L A H I +L H ++ T GD
Sbjct: 73 VN-----------------AIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDT 115
Query: 449 -LCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFL 497
L A + ++E L+K+G +V+++D+ G+TA +I++ N ++ L
Sbjct: 116 PLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats.
Identities = 48/154 (31%), Positives = 70/154 (45%), Gaps = 22/154 (14%)
Query: 285 LIEAMQSKQEDNVSILK--------------NFLQQHKKLKDLNIGDLIAESGEEDG--D 328
L+EA ++ Q+D V IL L L I +++ + G + D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID 77
Query: 329 PNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHAS 388
S L A G+ ++ LLK D + D+ G TPLH+AA GH E V VLLKH +
Sbjct: 78 IXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGA 137
Query: 389 NVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAI 422
+V+ +D ++DI I NGN L E +
Sbjct: 138 DVNAQDK---FGKTAFDISI---DNGNEDLAEIL 165
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 64.7 bits (156), Expect = 1e-10, Method: Composition-based stats.
Identities = 51/172 (29%), Positives = 78/172 (45%), Gaps = 25/172 (14%)
Query: 335 LLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRD 394
L+ A GN + +LL+ DP+ DS GRTPLH AA GH+E V +LL ++ + +
Sbjct: 8 LIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAK- 66
Query: 395 YIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDL-----L 449
D +G T L A + H I ++L A DP A D L
Sbjct: 67 ----------------DSDGRTPLHYAAENGHKEIVKLLLSKGA--DP-NAKDSDGRTPL 107
Query: 450 CTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNG 501
A + +++ L+ G + ++ D GRT +++A N E+V L G
Sbjct: 108 HYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQG 159
Score = 29.6 bits (65), Expect = 5.7, Method: Composition-based stats.
Identities = 15/58 (25%), Positives = 30/58 (51%)
Query: 446 GDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSD 503
G L A + + +++L++ G + ++ D GRT + A + E+V L+ G+D
Sbjct: 5 GKRLIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGAD 62
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 64.7 bits (156), Expect = 1e-10, Method: Composition-based stats.
Identities = 50/172 (29%), Positives = 78/172 (45%), Gaps = 25/172 (14%)
Query: 335 LLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRD 394
L+ A GN + +L++ D + DS GRTPLH AA +GH+E V +L+ ++V+ +
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAK- 66
Query: 395 YIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTA-----ISDPYTAGDLL 449
D +G T L A H I ++L A SD T L
Sbjct: 67 ----------------DSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTP---L 107
Query: 450 CTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNG 501
A K +++ L+ G +V++ D GRT +++A N E+V L G
Sbjct: 108 HYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQG 159
Score = 37.7 bits (86), Expect = 0.018, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 30/53 (56%)
Query: 452 AEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDV 504
A K +++ L+ G +V++KD GRT + A E + E+V L+ G+DV
Sbjct: 44 AAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADV 96
Score = 37.0 bits (84), Expect = 0.032, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 33/59 (55%)
Query: 446 GDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDV 504
G L A + + +++L++ G +V++ D GRT + A E + E+V L+ G+DV
Sbjct: 5 GKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADV 63
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 64.3 bits (155), Expect = 2e-10, Method: Composition-based stats.
Identities = 49/170 (28%), Positives = 81/170 (47%), Gaps = 19/170 (11%)
Query: 330 NMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASN 389
++ LL A G + L+ D + D+ G TPLH+AAS GH E V VLLK+ ++
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGAD 72
Query: 390 VHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPY--TAGD 447
V+ D+ G T L A ++ H I +L A + Y
Sbjct: 73 VNAS-----------------DLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHT 115
Query: 448 LLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFL 497
L A K + ++E L+K+G +V+++D+ G+TA +I++ N ++ L
Sbjct: 116 PLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 47/154 (30%), Positives = 76/154 (49%), Gaps = 22/154 (14%)
Query: 285 LIEAMQSKQEDNVSIL------------KNFLQQHKKLKD--LNIGDLIAESGEEDGDPN 330
L+EA ++ Q+D V IL + H + L I +++ ++G + +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASD 77
Query: 331 MS--VNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHAS 388
++ L A+TG+ ++ LLK D + D+ G TPLH+AA GH E V VLLKH +
Sbjct: 78 LTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGA 137
Query: 389 NVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAI 422
+V+ +D ++DI I NGN L E +
Sbjct: 138 DVNAQDK---FGKTAFDISI---DNGNEDLAEIL 165
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 26/41 (63%)
Query: 464 LVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDV 504
L+ G +V++ D G T + +A + ++E+V L+ NG+DV
Sbjct: 33 LMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADV 73
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 64.3 bits (155), Expect = 2e-10, Method: Composition-based stats.
Identities = 50/170 (29%), Positives = 83/170 (48%), Gaps = 19/170 (11%)
Query: 330 NMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASN 389
++ LL A G + L+ D + D+ G TPLH+AA+ GH E V VLLKH ++
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGAD 72
Query: 390 VHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILY-HCTAISDPYTAGDL 448
V+ +D+ G+T L A H I +L H ++ T GD
Sbjct: 73 VN-----------------AIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDT 115
Query: 449 -LCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFL 497
L A + ++E L+K+G +V+++D+ G+TA +I++ N ++ L
Sbjct: 116 PLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 63.2 bits (152), Expect = 4e-10, Method: Composition-based stats.
Identities = 49/170 (28%), Positives = 80/170 (47%), Gaps = 19/170 (11%)
Query: 330 NMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASN 389
++ LL A G + L+ D + D GRTPLH+AA+ GH E V VLL++ ++
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGAD 60
Query: 390 VHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRIL--YHCTAISDPYTAGD 447
V+ +D NG T L A S H I +L Y + T
Sbjct: 61 VN-----------------AVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGIT 103
Query: 448 LLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFL 497
L A + ++E L+K+G +V+++D+ G+TA +I++ N ++ L
Sbjct: 104 PLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDIGNEDLAEIL 153
Score = 52.4 bits (124), Expect = 7e-07, Method: Composition-based stats.
Identities = 43/139 (30%), Positives = 70/139 (50%), Gaps = 17/139 (12%)
Query: 285 LIEAMQSKQEDNVSIL--------------KNFLQQHKKLKDLNIGDLIAESGEEDG--D 328
L+EA ++ Q+D V IL + L + L I +++ +G + D
Sbjct: 6 LLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVD 65
Query: 329 PNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHAS 388
N + L AS G+ ++ LLK D + D+ G TPL++AA GH E V VLLKH +
Sbjct: 66 TNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGA 125
Query: 389 NVHLRD-YIIFMYNLSYDI 406
+V+ +D + +++S DI
Sbjct: 126 DVNAQDKFGKTAFDISIDI 144
Score = 33.9 bits (76), Expect = 0.23, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 27/41 (65%)
Query: 464 LVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDV 504
L+ G + ++ D +GRT + +A A ++E+V L+ NG+DV
Sbjct: 21 LMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADV 61
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 62.8 bits (151), Expect = 5e-10, Method: Composition-based stats.
Identities = 49/172 (28%), Positives = 78/172 (45%), Gaps = 25/172 (14%)
Query: 335 LLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRD 394
L+ A GN + +L++ D + DS GRTPLH AA GH+E V +L+ ++V+ +
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAK- 66
Query: 395 YIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTA-----ISDPYTAGDLL 449
D +G T L A + H + ++L A SD T L
Sbjct: 67 ----------------DSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTP---L 107
Query: 450 CTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNG 501
A + V++ L+ G +V++ D GRT +++A N E+V L G
Sbjct: 108 HHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQG 159
Score = 33.9 bits (76), Expect = 0.29, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 32/59 (54%)
Query: 446 GDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDV 504
G L A + + +++L++ G +V++ D GRT + A + E+V L+ G+DV
Sbjct: 5 GKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADV 63
Score = 33.5 bits (75), Expect = 0.37, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 29/53 (54%)
Query: 452 AEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDV 504
A + V++ L+ G +V++KD GRT + A + E+V L+ G+DV
Sbjct: 44 AAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADV 96
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 62.4 bits (150), Expect = 8e-10, Method: Composition-based stats.
Identities = 48/166 (28%), Positives = 77/166 (46%), Gaps = 19/166 (11%)
Query: 330 NMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASN 389
++ LL A G + L+ D + D+ G TPLH+AA GH E V VLLKH ++
Sbjct: 13 DLGKKLLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGAD 72
Query: 390 VHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPY--TAGD 447
V D+ G T L A + H I +L A + + T
Sbjct: 73 VDAA-----------------DVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGST 115
Query: 448 LLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEM 493
L A + ++E L+KYG +V+++D+ G+TA +I++ N ++
Sbjct: 116 PLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDL 161
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 60.8 bits (146), Expect = 2e-09, Method: Composition-based stats.
Identities = 49/172 (28%), Positives = 78/172 (45%), Gaps = 25/172 (14%)
Query: 335 LLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRD 394
L+ A GN + +LL+ D + DS G+TPLH+AA GH+E V +LL ++ + +
Sbjct: 8 LIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAK- 66
Query: 395 YIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDL-----L 449
D +G T L A + H + ++L A DP A D L
Sbjct: 67 ----------------DSDGKTPLHLAAENGHKEVVKLLLSQGA--DP-NAKDSDGKTPL 107
Query: 450 CTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNG 501
A + V++ L+ G + ++ D GRT +++A N E+V L G
Sbjct: 108 HLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQG 159
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 15/58 (25%), Positives = 32/58 (55%)
Query: 446 GDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSD 503
G L A + + +++L++ G +V++ D G+T + +A + E+V L+ G+D
Sbjct: 5 GKRLIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGAD 62
Score = 28.9 bits (63), Expect = 8.3, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 28/52 (53%)
Query: 452 AEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSD 503
A + V++ L+ G + ++KD G+T + +A + E+V L+ G+D
Sbjct: 44 AAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGAD 95
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 60.8 bits (146), Expect = 2e-09, Method: Composition-based stats.
Identities = 55/213 (25%), Positives = 87/213 (40%), Gaps = 65/213 (30%)
Query: 285 LIEAMQSKQEDNVSILKNFLQQHKKLKDLNIGDLIAESGEEDGDPNMSVNLLTVASTGNA 344
L+EA ++ Q+D V IL D+N D + L V + G+
Sbjct: 18 LLEAARAGQDDEVRILM------ANGADVNANDWFGIT-----------PLHLVVNNGHL 60
Query: 345 AFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSY 404
++ LLK D + D G TPLH+AA +GH E V VLLK+ ++V+ DY
Sbjct: 61 EIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDY--------- 111
Query: 405 DIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEEL 464
G T L A H + ++E L
Sbjct: 112 --------QGYTPLHLAAEDGH-------------------------------LEIVEVL 132
Query: 465 VKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFL 497
+KYG +V+++D+ G+TA +I++ N ++ L
Sbjct: 133 LKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 49.3 bits (116), Expect = 7e-06, Method: Composition-based stats.
Identities = 45/180 (25%), Positives = 74/180 (41%), Gaps = 48/180 (26%)
Query: 330 NMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASN 389
++ LL A G + L+ D + D G TPLH+ + GH E + VLLK+A++
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAAD 72
Query: 390 VHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLL 449
V+ D +G T L H A
Sbjct: 73 VNAS-----------------DKSGWTPL----------------HLAAY---------- 89
Query: 450 CTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANK 509
R + ++E L+KYG +V++ D G T + +A + ++E+V L+ G+DV +K
Sbjct: 90 -----RGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDK 144
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 60.8 bits (146), Expect = 2e-09, Method: Composition-based stats.
Identities = 49/173 (28%), Positives = 78/173 (45%), Gaps = 25/173 (14%)
Query: 330 NMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASN 389
++ LL A G + L+ D + D G TPLH+AA +GH E V VLLK ++
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 72
Query: 390 VHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTA-----ISDPYT 444
V+ + D +G T L A H I +L A D YT
Sbjct: 73 VNAK-----------------DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYT 115
Query: 445 AGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFL 497
L A + + ++E L+K G +V+++D+ G+TA +I++ N ++ L
Sbjct: 116 P---LHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 50/154 (32%), Positives = 75/154 (48%), Gaps = 22/154 (14%)
Query: 285 LIEAMQSKQEDNVSIL-KNFLQQHKKLKD-------------LNIGDLIAESGEE--DGD 328
L+EA ++ Q+D V IL N + K KD L I +++ ++G + D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 77
Query: 329 PNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHAS 388
+ L A G+ ++ LLKA D + D G TPLH+AA +GH E V VLLK +
Sbjct: 78 KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 137
Query: 389 NVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAI 422
+V+ +D ++DI I NGN L E +
Sbjct: 138 DVNAQDK---FGKTAFDISI---DNGNEDLAEIL 165
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 37/119 (31%), Positives = 61/119 (51%), Gaps = 16/119 (13%)
Query: 441 DPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMN 500
D YT L A + + ++E L+K G +V++KD+ G T + +A E ++E+V L+
Sbjct: 46 DGYTP---LHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA 102
Query: 501 GSDVVGANKCEFSSTNLNDMLQKREIGHRITVHDDNSTQNEVLLKKLEIIDFEAKEGKS 559
G+DV +K ++ + L RE GH V EVLLK ++ + K GK+
Sbjct: 103 GADVNAKDKDGYTPLH----LAARE-GHLEIV--------EVLLKAGADVNAQDKFGKT 148
Score = 35.0 bits (79), Expect = 0.11, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 13/94 (13%)
Query: 464 LVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQK 523
L+ G +V++KD+ G T + +A E ++E+V L+ G+DV +K ++ + L
Sbjct: 33 LMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLH----LAA 88
Query: 524 REIGHRITVHDDNSTQNEVLLKKLEIIDFEAKEG 557
RE GH V EVLLK ++ + K+G
Sbjct: 89 RE-GHLEIV--------EVLLKAGADVNAKDKDG 113
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 60.8 bits (146), Expect = 2e-09, Method: Composition-based stats.
Identities = 49/170 (28%), Positives = 79/170 (46%), Gaps = 19/170 (11%)
Query: 330 NMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASN 389
++ LL A G + L+ D + D+ G TPLH+AA GH E V VLLKH ++
Sbjct: 13 DLGRKLLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGAD 72
Query: 390 VHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDL- 448
V D +F Y T L A H I +L A + + +
Sbjct: 73 VDASD--VFGY---------------TPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMT 115
Query: 449 -LCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFL 497
L A K + ++E L+K+G +V+++D+ G+TA +I++ N ++ L
Sbjct: 116 PLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 37.7 bits (86), Expect = 0.019, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 31/47 (65%)
Query: 458 MSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDV 504
+ ++E L+K+G +VD+ D G T + +A ++E+V L+ NG+DV
Sbjct: 60 LEIVEVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADV 106
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 60.1 bits (144), Expect = 3e-09, Method: Composition-based stats.
Identities = 49/170 (28%), Positives = 80/170 (47%), Gaps = 19/170 (11%)
Query: 330 NMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASN 389
++ LL A G + L+ D + D G TPLH+AA GH E V VLLK+ ++
Sbjct: 13 DLGKKLLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGAD 72
Query: 390 VHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDL- 448
V+ +YD + G+T L A H I +L A + +
Sbjct: 73 VN-----------AYDTL------GSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGIT 115
Query: 449 -LCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFL 497
L A R + ++E L+KYG +V+++D+ G+TA +I++ N ++ L
Sbjct: 116 PLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISINNGNEDLAEIL 165
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 50/171 (29%), Positives = 79/171 (46%), Gaps = 21/171 (12%)
Query: 330 NMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASN 389
++ LL A G + L+ D + D G TPLH+AA GH E V VLLK+ ++
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGAD 72
Query: 390 VHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTA---ISDPYTAG 446
V+ +D + G T L A H I +L A SD +
Sbjct: 73 VNAKDSL-----------------GVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFT 115
Query: 447 DLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFL 497
L A KR + ++E L+K G +V+++D+ G+TA +I++ N ++ L
Sbjct: 116 PLHLAA-KRGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 52.0 bits (123), Expect = 9e-07, Method: Composition-based stats.
Identities = 48/154 (31%), Positives = 79/154 (51%), Gaps = 22/154 (14%)
Query: 285 LIEAMQSKQEDNVSIL---------KNF-----LQQHKKLKDLNIGDLIAESGEE-DGDP 329
L+EA ++ Q+D V IL ++F L L I +++ ++G + +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKD 77
Query: 330 NMSVNLLTVAST-GNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHAS 388
++ V L +A+ G+ ++ LLK D + DS G TPLH+AA +GH E V VLLK+ +
Sbjct: 78 SLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGA 137
Query: 389 NVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAI 422
+V+ +D ++DI I NGN L E +
Sbjct: 138 DVNAQDK---FGKTAFDISI---DNGNEDLAEIL 165
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 32/102 (31%), Positives = 54/102 (52%), Gaps = 13/102 (12%)
Query: 458 MSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNL 517
+ ++E L+K G +V++KD G T + +A ++E+V L+ NG+DV ++ F+ +L
Sbjct: 60 LEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHL 119
Query: 518 NDMLQKREIGHRITVHDDNSTQNEVLLKKLEIIDFEAKEGKS 559
KR GH V EVLLK ++ + K GK+
Sbjct: 120 ---AAKR--GHLEIV--------EVLLKNGADVNAQDKFGKT 148
Score = 28.9 bits (63), Expect = 7.8, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 26/41 (63%)
Query: 464 LVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDV 504
L+ G +V+++D G T + +A ++E+V L+ NG+DV
Sbjct: 33 LMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADV 73
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 48/173 (27%), Positives = 78/173 (45%), Gaps = 25/173 (14%)
Query: 330 NMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASN 389
++ LL A G + L+ D + D G TPLH+AA +GH E V VLLK ++
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 390 VHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTA-----ISDPYT 444
V+ + D +G T L A H I +L A D YT
Sbjct: 61 VNAK-----------------DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYT 103
Query: 445 AGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFL 497
L A + + ++E L+K G +V+++D+ G+T ++A+ E + ++ L
Sbjct: 104 P---LHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREGHEDIAEVL 153
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 42/126 (33%), Positives = 64/126 (50%), Gaps = 16/126 (12%)
Query: 285 LIEAMQSKQEDNVSIL-KNFLQQHKKLKD-------------LNIGDLIAESGEE--DGD 328
L+EA ++ Q+D V IL N + K KD L I +++ ++G + D
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 65
Query: 329 PNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHAS 388
+ L A G+ ++ LLKA D + D G TPLH+AA +GH E V VLLK +
Sbjct: 66 KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 125
Query: 389 NVHLRD 394
+V+ +D
Sbjct: 126 DVNAQD 131
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 37/119 (31%), Positives = 61/119 (51%), Gaps = 16/119 (13%)
Query: 441 DPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMN 500
D YT L A + + ++E L+K G +V++KD+ G T + +A E ++E+V L+
Sbjct: 34 DGYTP---LHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA 90
Query: 501 GSDVVGANKCEFSSTNLNDMLQKREIGHRITVHDDNSTQNEVLLKKLEIIDFEAKEGKS 559
G+DV +K ++ + L RE GH V EVLLK ++ + K GK+
Sbjct: 91 GADVNAKDKDGYTPLH----LAARE-GHLEIV--------EVLLKAGADVNAQDKFGKT 136
Score = 35.0 bits (79), Expect = 0.11, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 13/94 (13%)
Query: 464 LVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQK 523
L+ G +V++KD+ G T + +A E ++E+V L+ G+DV +K ++ + L
Sbjct: 21 LMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLH----LAA 76
Query: 524 REIGHRITVHDDNSTQNEVLLKKLEIIDFEAKEG 557
RE GH V EVLLK ++ + K+G
Sbjct: 77 RE-GHLEIV--------EVLLKAGADVNAKDKDG 101
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 320 AESGEEDGDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEEC 379
A+ +D D ++L A G+ ++ LLKA D + D G+TP +A +GHE+
Sbjct: 92 ADVNAKDKDGYTPLHL--AAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREGHEDI 149
Query: 380 VLVLLKHA 387
VL K A
Sbjct: 150 AEVLQKAA 157
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 48/173 (27%), Positives = 77/173 (44%), Gaps = 25/173 (14%)
Query: 330 NMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASN 389
++ LL A G + L+ D + D G TPLH+AA +GH E V VLLK ++
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 390 VHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTA-----ISDPYT 444
V+ + D +G T L A H I +L A D YT
Sbjct: 61 VNAK-----------------DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYT 103
Query: 445 AGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFL 497
L A + + ++E L+K G +V+++D+ G+T ++A+ N ++ L
Sbjct: 104 P---LHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDNGNEDIAEVL 153
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 42/126 (33%), Positives = 64/126 (50%), Gaps = 16/126 (12%)
Query: 285 LIEAMQSKQEDNVSIL-KNFLQQHKKLKD-------------LNIGDLIAESGEE--DGD 328
L+EA ++ Q+D V IL N + K KD L I +++ ++G + D
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 65
Query: 329 PNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHAS 388
+ L A G+ ++ LLKA D + D G TPLH+AA +GH E V VLLK +
Sbjct: 66 KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 125
Query: 389 NVHLRD 394
+V+ +D
Sbjct: 126 DVNAQD 131
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 37/119 (31%), Positives = 61/119 (51%), Gaps = 16/119 (13%)
Query: 441 DPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMN 500
D YT L A + + ++E L+K G +V++KD+ G T + +A E ++E+V L+
Sbjct: 34 DGYTP---LHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA 90
Query: 501 GSDVVGANKCEFSSTNLNDMLQKREIGHRITVHDDNSTQNEVLLKKLEIIDFEAKEGKS 559
G+DV +K ++ + L RE GH V EVLLK ++ + K GK+
Sbjct: 91 GADVNAKDKDGYTPLH----LAARE-GHLEIV--------EVLLKAGADVNAQDKFGKT 136
Score = 35.0 bits (79), Expect = 0.11, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 13/94 (13%)
Query: 464 LVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQK 523
L+ G +V++KD+ G T + +A E ++E+V L+ G+DV +K ++ + L
Sbjct: 21 LMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLH----LAA 76
Query: 524 REIGHRITVHDDNSTQNEVLLKKLEIIDFEAKEG 557
RE GH V EVLLK ++ + K+G
Sbjct: 77 RE-GHLEIV--------EVLLKAGADVNAKDKDG 101
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 320 AESGEEDGDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEEC 379
A+ +D D ++L A G+ ++ LLKA D + D G+TP +A G+E+
Sbjct: 92 ADVNAKDKDGYTPLHL--AAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDNGNEDI 149
Query: 380 VLVLLKHA 387
VL K A
Sbjct: 150 AEVLQKAA 157
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 57.4 bits (137), Expect = 2e-08, Method: Composition-based stats.
Identities = 40/141 (28%), Positives = 70/141 (49%), Gaps = 19/141 (13%)
Query: 364 GRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAIS 423
GRTPLH+AA GH E V +LL+ ++V+ + D NG T L A
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAK-----------------DKNGRTPLHLAAR 44
Query: 424 SKHHSIFRILYHCTAISDPYTAGDL--LCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTA 481
+ H + ++L A + L A + + V++ L++ G +V++KD++GRT
Sbjct: 45 NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTP 104
Query: 482 IEIAMAENNVEMVNFLVMNGS 502
+ +A ++E+V L+ G+
Sbjct: 105 LHLAARNGHLEVVKLLLEAGA 125
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 38/128 (29%), Positives = 57/128 (44%), Gaps = 19/128 (14%)
Query: 313 LNIGDLIAESGEE--DGDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHI 370
L + L+ E+G + D N L A G+ + LL+A D + D GRTPLH+
Sbjct: 15 LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHL 74
Query: 371 AASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIF 430
AA GH E V +LL+ ++V+ + D NG T L A + H +
Sbjct: 75 AARNGHLEVVKLLLEAGADVNAK-----------------DKNGRTPLHLAARNGHLEVV 117
Query: 431 RILYHCTA 438
++L A
Sbjct: 118 KLLLEAGA 125
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 37/58 (63%)
Query: 452 AEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANK 509
A + + V++ L++ G +V++KD++GRT + +A ++E+V L+ G+DV +K
Sbjct: 9 AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK 66
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 88/198 (44%), Gaps = 18/198 (9%)
Query: 338 VASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLL-KHASNVHL--RD 394
A G+ + LL+ +P++ + G TPLHIAA +GH E VL LL K AS + +
Sbjct: 87 AARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKG 146
Query: 395 YIIFMYNLSYDIIILLDM-------------NGNTALWEAISSKHHSIFRILYH--CTAI 439
+ Y + + ++ NG T L A+ + I ++L +
Sbjct: 147 FTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPH 206
Query: 440 SDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVM 499
S + L A K+N + V L++YG + +++ G T + +A E + EMV L+
Sbjct: 207 SPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLS 266
Query: 500 NGSDVVGANKCEFSSTNL 517
++ NK + +L
Sbjct: 267 KQANGNLGNKSGLTPLHL 284
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 79/197 (40%), Gaps = 24/197 (12%)
Query: 324 EEDGDPNMS----VNLLTVASTGNAAFLDELLKARL-DPDIGDSKGRTPLHIAASKGHEE 378
E D PN + + L VA N + +LL R P G TPLHIAA + E
Sbjct: 167 ERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVE 226
Query: 379 CVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTA 438
LL++ + + + G T L A H + +L A
Sbjct: 227 VARSLLQYGGSANAES-----------------VQGVTPLHLAAQEGHAEMVALLLSKQA 269
Query: 439 ISDPYTAGDL--LCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNF 496
+ L L + + V + L+K+G+ VD+ R G T + +A N+++V F
Sbjct: 270 NGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKF 329
Query: 497 LVMNGSDVVGANKCEFS 513
L+ + +DV K +S
Sbjct: 330 LLQHQADVNAKTKLGYS 346
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 79/187 (42%), Gaps = 19/187 (10%)
Query: 336 LTVAS-TGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRD 394
L VAS G+ + LL+ P++ + K TPLH+AA GH E LL++ + V+ +
Sbjct: 18 LHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKA 77
Query: 395 -------YIIFMYNLSYDIIILLDMN---------GNTALWEAISSKHHSIFRILYHCTA 438
+ + + +LL+ N G+T L A H L A
Sbjct: 78 KDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEA 137
Query: 439 ISDPYTAGDL--LCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNF 496
T L A K + V E L++ + ++ ++G T + +A+ NN+++V
Sbjct: 138 SQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKL 197
Query: 497 LVMNGSD 503
L+ G
Sbjct: 198 LLPRGGS 204
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 326 DGDPNMSVNLLTVAST-GNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLL 384
D M L VAS GN + LL+ + D + G +PLH AA +GH + V +LL
Sbjct: 305 DATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLL 364
Query: 385 KHASN 389
K+ ++
Sbjct: 365 KNGAS 369
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 57/213 (26%), Positives = 87/213 (40%), Gaps = 65/213 (30%)
Query: 285 LIEAMQSKQEDNVSILKNFLQQHKKLKDLNIGDLIAESGEEDGDPNMSVNLLTVASTGNA 344
L+EA + Q+D V IL N D+ A D N L A+ G
Sbjct: 10 LLEAAAAGQDDEVRILM-----------ANGADVNAT------DDNGLTPLHLAAANGQL 52
Query: 345 AFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSY 404
++ LLK D + DS G TPLH+AA GH E V VLLKH ++V+ +Y
Sbjct: 53 EIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVN-----------AY 101
Query: 405 DIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEEL 464
D A W + H A+S + ++E L
Sbjct: 102 D----------RAGWTPL------------HLAALS---------------GQLEIVEVL 124
Query: 465 VKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFL 497
+K+G +V+++D G TA +I++ + ++ L
Sbjct: 125 LKHGADVNAQDALGLTAFDISINQGQEDLAEIL 157
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 44/175 (25%), Positives = 71/175 (40%), Gaps = 48/175 (27%)
Query: 330 NMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASN 389
++ LL A+ G + L+ D + D G TPLH+AA+ G E V VLLK+ ++
Sbjct: 5 DLGKKLLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGAD 64
Query: 390 VHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLL 449
V+ D G T L A H
Sbjct: 65 VNASDSA-----------------GITPLHLAAYDGH----------------------- 84
Query: 450 CTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDV 504
+ ++E L+K+G +V++ DR G T + +A +E+V L+ +G+DV
Sbjct: 85 --------LEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADV 131
Score = 33.1 bits (74), Expect = 0.48, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 31/54 (57%)
Query: 464 LVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNL 517
L+ G +V++ D +G T + +A A +E+V L+ NG+DV ++ + +L
Sbjct: 25 LMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHL 78
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 80/187 (42%), Gaps = 21/187 (11%)
Query: 328 DPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHA 387
D + L S G+ ++ LL+ + + D G +PLHIAAS G +E V LL
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKG 96
Query: 388 SNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTA---ISDPYT 444
++V+ ++ NG T L A S H I +L A D Y
Sbjct: 97 AHVN-----------------AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYD 139
Query: 445 AGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDV 504
A + A K N + ++ L+ Y + + +D G T + +A E VE FLV G+ +
Sbjct: 140 ATAMHRAAAKGN-LKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASI 198
Query: 505 VGANKCE 511
NK E
Sbjct: 199 YIENKEE 205
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 53.5 bits (127), Expect = 3e-07, Method: Composition-based stats.
Identities = 45/170 (26%), Positives = 77/170 (45%), Gaps = 19/170 (11%)
Query: 330 NMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASN 389
++ LL A G + L+ D + D G TPLH+AA GH E V VLLK+ ++
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGAD 72
Query: 390 VHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAI--SDPYTAGD 447
V+ D + G T L A H + +L A ++ +
Sbjct: 73 VNADDSL-----------------GVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFT 115
Query: 448 LLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFL 497
L A + ++E L+K+G +V+++D+ G+TA +I++ N ++ L
Sbjct: 116 PLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 48/154 (31%), Positives = 76/154 (49%), Gaps = 22/154 (14%)
Query: 285 LIEAMQSKQEDNVSILK--------------NFLQQHKKLKDLNIGDLIAESGEE-DGDP 329
L+EA ++ Q+D V IL L L I +++ ++G + + D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADD 77
Query: 330 NMSVNLLTVAST-GNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHAS 388
++ V L +A+ G+ ++ LLK D + D G TPLH+AA+ GH E V VLLKH +
Sbjct: 78 SLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGA 137
Query: 389 NVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAI 422
+V+ +D ++DI I NGN L E +
Sbjct: 138 DVNAQDK---FGKTAFDISI---DNGNEDLAEIL 165
Score = 37.7 bits (86), Expect = 0.018, Method: Composition-based stats.
Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 13/102 (12%)
Query: 458 MSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNL 517
+ ++E L+K G +V++ D G T + +A ++E+V L+ NG+DV + F+ +L
Sbjct: 60 LEIVEVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHL 119
Query: 518 NDMLQKREIGHRITVHDDNSTQNEVLLKKLEIIDFEAKEGKS 559
IGH V EVLLK ++ + K GK+
Sbjct: 120 -----AANIGHLEIV--------EVLLKHGADVNAQDKFGKT 148
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 80/187 (42%), Gaps = 21/187 (11%)
Query: 328 DPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHA 387
D + L S G+ ++ LL+ + + D G +PLHIAAS G +E V LL
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKG 96
Query: 388 SNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTA---ISDPYT 444
++V+ ++ NG T L A S H I +L A D Y
Sbjct: 97 AHVN-----------------AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYD 139
Query: 445 AGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDV 504
A + A K N + ++ L+ Y + + +D G T + +A E VE FLV G+ +
Sbjct: 140 ATAMHRAAAKGN-LKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASI 198
Query: 505 VGANKCE 511
NK E
Sbjct: 199 YIENKEE 205
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 42/168 (25%), Positives = 70/168 (41%), Gaps = 48/168 (28%)
Query: 330 NMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASN 389
++ LL G + L+ D + D G TPLH+AA +GH E V VLLKH ++
Sbjct: 13 DLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD 72
Query: 390 VHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLL 449
V+ R D+ G T L A + H
Sbjct: 73 VNAR-----------------DIWGRTPLHLAATVGH----------------------- 92
Query: 450 CTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFL 497
+ ++E L++YG +V+++D+ G+TA +I++ N ++ L
Sbjct: 93 --------LEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 43/139 (30%), Positives = 68/139 (48%), Gaps = 25/139 (17%)
Query: 285 LIEAMQSKQEDNVSILKNFLQQHKKLKDLNIGDLIAESGEEDGDPNMSVNLLTVAST-GN 343
L+EA ++ Q+D V IL +A + + + V L +A+ G+
Sbjct: 18 LLEATRAGQDDEVRIL------------------MANGADVNAMDDAGVTPLHLAAKRGH 59
Query: 344 AAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLS 403
++ LLK D + D GRTPLH+AA+ GH E V VLL++ ++V+ +D +
Sbjct: 60 LEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDK---FGKTA 116
Query: 404 YDIIILLDMNGNTALWEAI 422
+DI I NGN L E +
Sbjct: 117 FDISI---DNGNEDLAEIL 132
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 37/58 (63%)
Query: 452 AEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANK 509
A KR + ++E L+K+G +V+++D GRT + +A ++E+V L+ G+DV +K
Sbjct: 54 AAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDK 111
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 77/175 (44%), Gaps = 22/175 (12%)
Query: 327 GDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKH 386
GD N S L G+ + + +L+K DP + D +G + +H+AA GH V L+
Sbjct: 73 GDLN-STPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAK 131
Query: 387 ASNVHLRDYIIFMYNLSYDIIILLDMNGNTAL-WEAISSKHHSIFRILYH---CTAISDP 442
+V ++D NG T L W A + R+L + D
Sbjct: 132 GQDVD-----------------MMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDK 174
Query: 443 YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFL 497
Y L A + +V+ L++ G NVD+++ G +A+++A NV M+N L
Sbjct: 175 YHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHL 229
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 10/92 (10%)
Query: 419 WEAISSKHHSIFRILYHCT--AISDPYTAGDLLCT----AEKRNDMSVMEELVKYGLNVD 472
W AI+++ I + Y+ + AI D GDL T A ++ +S++ +L+KYG +
Sbjct: 48 WAAINNR---IDLVKYYISKGAIVDQ-LGGDLNSTPLHWATRQGHLSMVVQLMKYGADPS 103
Query: 473 SKDRHGRTAIEIAMAENNVEMVNFLVMNGSDV 504
D G + I +A + +V +L+ G DV
Sbjct: 104 LIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDV 135
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 86/206 (41%), Gaps = 21/206 (10%)
Query: 309 KLKDLNIGDLIAESGEEDGDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPL 368
KL++L L +S D + L S G+ ++ LL+ + + D G +PL
Sbjct: 18 KLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPL 77
Query: 369 HIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHS 428
HIAAS G +E V LL + V+ ++ NG T L A S H
Sbjct: 78 HIAASAGRDEIVKALLGKGAQVN-----------------AVNQNGCTPLHYAASKNRHE 120
Query: 429 IFRILYHCTA---ISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIA 485
I +L A D Y A + A K N + ++ L+ Y + + +D G T + +A
Sbjct: 121 IAVMLLEGGANPDAKDHYEATAMHRAAAKGN-LKMIHILLYYKASTNIQDTEGNTPLHLA 179
Query: 486 MAENNVEMVNFLVMNGSDVVGANKCE 511
E VE LV G+ + NK E
Sbjct: 180 CDEERVEEAKLLVSQGASIYIENKEE 205
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 52.4 bits (124), Expect = 8e-07, Method: Composition-based stats.
Identities = 48/173 (27%), Positives = 77/173 (44%), Gaps = 25/173 (14%)
Query: 330 NMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASN 389
++ LL A G + L+ D + D+ G TPLH+AA GH E V VLLK+ ++
Sbjct: 13 DLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD 72
Query: 390 VHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDL- 448
V+ D+ G T L A H I +L A A D+
Sbjct: 73 VNAVDHA-----------------GMTPLRLAALFGHLEIVEVLLKNGA---DVNANDME 112
Query: 449 ----LCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFL 497
L A + ++E L+K G +V+++D+ G+TA +I++ N ++ L
Sbjct: 113 GHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 34.7 bits (78), Expect = 0.16, Method: Composition-based stats.
Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 13/102 (12%)
Query: 458 MSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNL 517
+ ++E L+K G +V++ D G T + +A ++E+V L+ NG+DV + + +L
Sbjct: 60 LEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHL 119
Query: 518 NDMLQKREIGHRITVHDDNSTQNEVLLKKLEIIDFEAKEGKS 559
M EI EVLLK ++ + K GK+
Sbjct: 120 AAMFGHLEI-------------VEVLLKNGADVNAQDKFGKT 148
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 32/63 (50%)
Query: 464 LVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQK 523
L+ G +V+++D G T + +A ++E+V L+ NG+DV + + L +
Sbjct: 33 LMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGH 92
Query: 524 REI 526
EI
Sbjct: 93 LEI 95
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 86/206 (41%), Gaps = 21/206 (10%)
Query: 309 KLKDLNIGDLIAESGEEDGDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPL 368
KL++L L +S D + L S G+ ++ LL+ + + D G +PL
Sbjct: 19 KLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPL 78
Query: 369 HIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHS 428
HIAAS G +E V LL + V+ ++ NG T L A S H
Sbjct: 79 HIAASAGRDEIVKALLGKGAQVN-----------------AVNQNGCTPLHYAASKNRHE 121
Query: 429 IFRILYHCTA---ISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIA 485
I +L A D Y A + A K N + ++ L+ Y + + +D G T + +A
Sbjct: 122 IAVMLLEGGANPDAKDHYEATAMHRAAAKGN-LKMIHILLYYKASTNIQDTEGNTPLHLA 180
Query: 486 MAENNVEMVNFLVMNGSDVVGANKCE 511
E VE LV G+ + NK E
Sbjct: 181 CDEERVEEAKLLVSQGASIYIENKEE 206
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 44/139 (31%), Positives = 69/139 (49%), Gaps = 25/139 (17%)
Query: 285 LIEAMQSKQEDNVSILKNFLQQHKKLKDLNIGDLIAESGEEDGDPNMSVNLLTVAST-GN 343
L+EA ++ Q+D V IL +A + + + V L +A+ G+
Sbjct: 18 LLEATRAGQDDEVRIL------------------MANGADVNAMDDAGVTPLHLAAKRGH 59
Query: 344 AAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLS 403
++ LLK D + DS GRTPLH+AA+ GH E V VLL++ ++V+ +D +
Sbjct: 60 LEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDK---FGKTA 116
Query: 404 YDIIILLDMNGNTALWEAI 422
+DI I NGN L E +
Sbjct: 117 FDISI---DNGNEDLAEIL 132
Score = 49.7 bits (117), Expect = 4e-06, Method: Composition-based stats.
Identities = 42/168 (25%), Positives = 70/168 (41%), Gaps = 48/168 (28%)
Query: 330 NMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASN 389
++ LL G + L+ D + D G TPLH+AA +GH E V VLLKH ++
Sbjct: 13 DLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD 72
Query: 390 VHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLL 449
V+ D S+ G T L A + H
Sbjct: 73 VNASD--------SW---------GRTPLHLAATVGH----------------------- 92
Query: 450 CTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFL 497
+ ++E L++YG +V+++D+ G+TA +I++ N ++ L
Sbjct: 93 --------LEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 36/58 (62%)
Query: 452 AEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANK 509
A KR + ++E L+K+G +V++ D GRT + +A ++E+V L+ G+DV +K
Sbjct: 54 AAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDK 111
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 41/168 (24%), Positives = 69/168 (41%), Gaps = 48/168 (28%)
Query: 330 NMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASN 389
++ LL G + L+ D + D G TPLH+AA +GH E V VLLKH ++
Sbjct: 13 DLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD 72
Query: 390 VHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLL 449
V+ D+ G T L A + H
Sbjct: 73 VNAS-----------------DIWGRTPLHLAATVGH----------------------- 92
Query: 450 CTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFL 497
+ ++E L++YG +V+++D+ G+TA +I++ N ++ L
Sbjct: 93 --------LEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 43/139 (30%), Positives = 68/139 (48%), Gaps = 25/139 (17%)
Query: 285 LIEAMQSKQEDNVSILKNFLQQHKKLKDLNIGDLIAESGEEDGDPNMSVNLLTVAST-GN 343
L+EA ++ Q+D V IL +A + + + V L +A+ G+
Sbjct: 18 LLEATRAGQDDEVRIL------------------MANGADVNAMDDAGVTPLHLAAKRGH 59
Query: 344 AAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLS 403
++ LLK D + D GRTPLH+AA+ GH E V VLL++ ++V+ +D +
Sbjct: 60 LEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDK---FGKTA 116
Query: 404 YDIIILLDMNGNTALWEAI 422
+DI I NGN L E +
Sbjct: 117 FDISI---DNGNEDLAEIL 132
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 36/58 (62%)
Query: 452 AEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANK 509
A KR + ++E L+K+G +V++ D GRT + +A ++E+V L+ G+DV +K
Sbjct: 54 AAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDK 111
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 48/138 (34%), Positives = 67/138 (48%), Gaps = 23/138 (16%)
Query: 285 LIEAMQSKQEDNVSILKNFLQQHKKLKDLNIGDLIAESGEEDGDPNMSVNLLTVASTGNA 344
L+EA ++ Q+D V IL D+N D EDG L A G+
Sbjct: 18 LLEAARAGQDDEVRILM------ANGADVNALD-------EDG----LTPLHLAAQLGHL 60
Query: 345 AFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSY 404
++ LLK D + D+ G TPLH+AA +GH E V VLLKH ++V+ +D ++
Sbjct: 61 EIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDK---FGKTAF 117
Query: 405 DIIILLDMNGNTALWEAI 422
DI I NGN L E +
Sbjct: 118 DISI---DNGNEDLAEIL 132
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 43/168 (25%), Positives = 69/168 (41%), Gaps = 48/168 (28%)
Query: 330 NMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASN 389
++ LL A G + L+ D + D G TPLH+AA GH E V VLLK+ ++
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGAD 72
Query: 390 VHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLL 449
V+ D G T L H AI
Sbjct: 73 VNAEDNF-----------------GITPL----------------HLAAI---------- 89
Query: 450 CTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFL 497
R + ++E L+K+G +V+++D+ G+TA +I++ N ++ L
Sbjct: 90 -----RGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 38.5 bits (88), Expect = 0.011, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 36/58 (62%)
Query: 452 AEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANK 509
A + + ++E L+KYG +V+++D G T + +A ++E+V L+ +G+DV +K
Sbjct: 54 AAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDK 111
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 49.3 bits (116), Expect = 6e-06, Method: Composition-based stats.
Identities = 42/168 (25%), Positives = 69/168 (41%), Gaps = 48/168 (28%)
Query: 330 NMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASN 389
++ LL A G + L+ D + D KG TPLH+AA H E V VLLKH ++
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGAD 72
Query: 390 VHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLL 449
V+ D +G+T L A H
Sbjct: 73 VNAHDN-----------------DGSTPLHLAALFGH----------------------- 92
Query: 450 CTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFL 497
+ ++E L+K+G +V+++D+ G+TA +I++ N ++ L
Sbjct: 93 --------LEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 45.8 bits (107), Expect = 7e-05, Method: Composition-based stats.
Identities = 46/138 (33%), Positives = 66/138 (47%), Gaps = 23/138 (16%)
Query: 285 LIEAMQSKQEDNVSILKNFLQQHKKLKDLNIGDLIAESGEEDGDPNMSVNLLTVASTGNA 344
L+EA ++ Q+D V IL N D+ A D N ++L A +
Sbjct: 18 LLEAARAGQDDEVRILM-----------ANGADVNAN----DRKGNTPLHL--AADYDHL 60
Query: 345 AFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSY 404
++ LLK D + D+ G TPLH+AA GH E V VLLKH ++V+ +D ++
Sbjct: 61 EIVEVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDK---FGKTAF 117
Query: 405 DIIILLDMNGNTALWEAI 422
DI I NGN L E +
Sbjct: 118 DISI---DNGNEDLAEIL 132
Score = 35.4 bits (80), Expect = 0.084, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 35/58 (60%)
Query: 452 AEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANK 509
A + + ++E L+K+G +V++ D G T + +A ++E+V L+ +G+DV +K
Sbjct: 54 AADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDK 111
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 27/41 (65%)
Query: 464 LVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDV 504
L+ G +V++ DR G T + +A +++E+V L+ +G+DV
Sbjct: 33 LMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADV 73
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 86/214 (40%), Gaps = 68/214 (31%)
Query: 285 LIEAMQSKQEDNVSILKNFLQQHKKLKDLNIGDLIAESGEEDGDPNMSVNLLTVASTGNA 344
L+EA ++ Q+D V IL +A D + L A G+
Sbjct: 6 LLEAARAGQDDEVRIL------------------MANGAPFTTDWLGTSPLHLAAQYGHF 47
Query: 345 AFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSY 404
+ + LL+A + D RTPLH+AAS+GH V VLLKH ++V+ +D
Sbjct: 48 STTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKD---------- 97
Query: 405 DIIILLDMNGNTAL-WEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEE 463
+L M TAL W A + N V+E
Sbjct: 98 ----MLKM---TALHW--------------------------------ATEHNHQEVVEL 118
Query: 464 LVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFL 497
L+KYG +V ++ + +TA +I++ N ++ L
Sbjct: 119 LIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 2/96 (2%)
Query: 411 DMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDL--LCTAEKRNDMSVMEELVKYG 468
D G + L A H S +L D T D L A +++E L+K+G
Sbjct: 31 DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHG 90
Query: 469 LNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDV 504
+V++KD TA+ A N+ E+V L+ G+DV
Sbjct: 91 ADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADV 126
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 72/165 (43%), Gaps = 43/165 (26%)
Query: 341 TGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMY 400
T + LL A DP++ D +G TPLH+A +G V VL + + HL
Sbjct: 52 TNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHL-------- 103
Query: 401 NLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSV 460
+ I+ + NG+T L H +I + +
Sbjct: 104 ---HSILKATNYNGHTCL----------------HLASI---------------HGYLGI 129
Query: 461 MEELVKYGLNVDSKDR-HGRTAIEIAMAENNVEMVNFLVMNGSDV 504
+E LV G +V++++ +GRTA+ +A+ N ++V+ L+ G+DV
Sbjct: 130 VELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADV 174
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 72/165 (43%), Gaps = 43/165 (26%)
Query: 341 TGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMY 400
T + LL A DP++ D +G TPLH+A +G V VL + + HL
Sbjct: 55 TNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHL-------- 106
Query: 401 NLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSV 460
+ I+ + NG+T L H +I + +
Sbjct: 107 ---HSILKATNYNGHTCL----------------HLASI---------------HGYLGI 132
Query: 461 MEELVKYGLNVDSKDR-HGRTAIEIAMAENNVEMVNFLVMNGSDV 504
+E LV G +V++++ +GRTA+ +A+ N ++V+ L+ G+DV
Sbjct: 133 VELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADV 177
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 44/138 (31%), Positives = 63/138 (45%), Gaps = 23/138 (16%)
Query: 285 LIEAMQSKQEDNVSILKNFLQQHKKLKDLNIGDLIAESGEEDGDPNMSVNLLTVASTGNA 344
L+EA ++ Q+D V IL D+N D + L A G+
Sbjct: 18 LLEAARAGQDDEVRILT------ANGADVNANDYWGHT-----------PLHLAAMLGHL 60
Query: 345 AFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSY 404
++ LLK D + + GRTPLH+AA H E V VLLKH ++V+ +D ++
Sbjct: 61 EIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDK---FGKTAF 117
Query: 405 DIIILLDMNGNTALWEAI 422
DI I NGN L E +
Sbjct: 118 DISI---DNGNEDLAEIL 132
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 42/168 (25%), Positives = 68/168 (40%), Gaps = 48/168 (28%)
Query: 330 NMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASN 389
++ LL A G + L D + D G TPLH+AA GH E V VLLK+ ++
Sbjct: 13 DLGKKLLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGAD 72
Query: 390 VHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLL 449
V + GNT R H A +D
Sbjct: 73 V--------------------NATGNTG-------------RTPLHLAAWAD-------- 91
Query: 450 CTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFL 497
+ ++E L+K+G +V+++D+ G+TA +I++ N ++ L
Sbjct: 92 -------HLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 34.7 bits (78), Expect = 0.14, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 33/52 (63%)
Query: 458 MSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANK 509
+ ++E L+K G +V++ GRT + +A +++E+V L+ +G+DV +K
Sbjct: 60 LEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDK 111
Score = 29.3 bits (64), Expect = 5.9, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 464 LVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDV 504
L G +V++ D G T + +A ++E+V L+ NG+DV
Sbjct: 33 LTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADV 73
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 48/139 (34%)
Query: 364 GRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAIS 423
GRTPLH+AA GH E V +LL+ ++V+ +D NG T L A
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKD-----------------KNGRTPLHLAAR 44
Query: 424 SKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIE 483
+ H + V++ L++ G +V++KD++GRT +
Sbjct: 45 NGH-------------------------------LEVVKLLLEAGADVNAKDKNGRTPLH 73
Query: 484 IAMAENNVEMVNFLVMNGS 502
+A ++E+V L+ G+
Sbjct: 74 LAARNGHLEVVKLLLEAGA 92
Score = 45.4 bits (106), Expect = 9e-05, Method: Composition-based stats.
Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 17/100 (17%)
Query: 339 ASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIF 398
A G+ + LL+A D + D GRTPLH+AA GH E V +LL+ ++V+ +
Sbjct: 10 ARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK----- 64
Query: 399 MYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTA 438
D NG T L A + H + ++L A
Sbjct: 65 ------------DKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 313 LNIGDLIAESGEE--DGDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHI 370
L + L+ E+G + D N L A G+ + LL+A D + D GRTPLH+
Sbjct: 15 LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHL 74
Query: 371 AASKGHEECVLVLLK 385
AA GH E V +LL+
Sbjct: 75 AARNGHLEVVKLLLE 89
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 37/58 (63%)
Query: 452 AEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANK 509
A + + V++ L++ G +V++KD++GRT + +A ++E+V L+ G+DV +K
Sbjct: 9 AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK 66
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/188 (21%), Positives = 80/188 (42%), Gaps = 54/188 (28%)
Query: 358 DIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLR--DYIIFMY----NLSYDIIILL- 410
++ G +PLH+AA G + + +LLKH +N R D + ++ + ++ L
Sbjct: 80 NVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLL 139
Query: 411 ---------DMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVM 461
D++GNT L A S HH + +
Sbjct: 140 DSNAKPNKKDLSGNTPLIYACSGGHHELVAL----------------------------- 170
Query: 462 EELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANK-------CEFSS 514
L+++G ++++ + G TA+ A+ E +V +V L+++G+ V NK C +
Sbjct: 171 --LLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQN 228
Query: 515 TNLNDMLQ 522
+ + ++LQ
Sbjct: 229 SKIMELLQ 236
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 51/114 (44%), Gaps = 19/114 (16%)
Query: 320 AESGEEDGDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEEC 379
A +G + D +V L G+ + LL + P+ D G TPL A S GH E
Sbjct: 110 ANAGARNAD--QAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHEL 167
Query: 380 VLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRIL 433
V +LL+H +++ N S + GNTAL EA+ KH + +L
Sbjct: 168 VALLLQHGASI----------NASNN-------KGNTALHEAVIEKHVFVVELL 204
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 56/145 (38%), Gaps = 28/145 (19%)
Query: 366 TPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWE----- 420
+PLH A GH CV +LLKH + V NG TA W
Sbjct: 38 SPLHEACLGGHLSCVKILLKHGAQV----------------------NGVTADWHTPLFN 75
Query: 421 -AISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGR 479
+S + +L H ++ + A +R + + L+ YG N+D K H
Sbjct: 76 ACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLG 135
Query: 480 TAIEIAMAENNVEMVNFLVMNGSDV 504
T + +A V L+ +G+DV
Sbjct: 136 TPLYLACENQQRACVKKLLESGADV 160
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 56/145 (38%), Gaps = 28/145 (19%)
Query: 366 TPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEA---- 421
+PLH A GH CV +LLKH + V NG TA W
Sbjct: 94 SPLHEACLGGHLSCVKILLKHGAQV----------------------NGVTADWHTPLFN 131
Query: 422 --ISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGR 479
+S + +L H ++ + A +R + + L+ YG N+D K H
Sbjct: 132 ACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLG 191
Query: 480 TAIEIAMAENNVEMVNFLVMNGSDV 504
T + +A V L+ +G+DV
Sbjct: 192 TPLYLACENQQRACVKKLLESGADV 216
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 45.4 bits (106), Expect = 8e-05, Method: Composition-based stats.
Identities = 42/139 (30%), Positives = 65/139 (46%), Gaps = 25/139 (17%)
Query: 285 LIEAMQSKQEDNVSILKNFLQQHKKLKDLNIGDLIAESGEEDGDPNMSVNLLTVAST-GN 343
L+EA ++ Q+D V IL +A + + + L +A+ G+
Sbjct: 18 LLEAARAGQDDEVRIL------------------MANGADVNAKDEYGLTPLYLATAHGH 59
Query: 344 AAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLS 403
++ LLK D + D+ G TPLH+AA GH E VLLKH ++V+ +D +
Sbjct: 60 LEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDK---FGKTA 116
Query: 404 YDIIILLDMNGNTALWEAI 422
+DI I NGN L E +
Sbjct: 117 FDISI---GNGNEDLAEIL 132
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 40/168 (23%), Positives = 67/168 (39%), Gaps = 48/168 (28%)
Query: 330 NMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASN 389
++ LL A G + L+ D + D G TPL++A + GH E V VLLK+ ++
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD 72
Query: 390 VHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLL 449
V+ D I G T L A H
Sbjct: 73 VNAVDAI-----------------GFTPLHLAAFIGH----------------------- 92
Query: 450 CTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFL 497
+ + E L+K+G +V+++D+ G+TA +I++ N ++ L
Sbjct: 93 --------LEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 13/96 (13%)
Query: 464 LVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQK 523
L+ G +V++KD +G T + +A A ++E+V L+ NG+DV + F+ +L +
Sbjct: 33 LMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGH 92
Query: 524 REIGHRITVHDDNSTQNEVLLKKLEIIDFEAKEGKS 559
EI EVLLK ++ + K GK+
Sbjct: 93 LEIA-------------EVLLKHGADVNAQDKFGKT 115
>pdb|3OUF|A Chain A, Structure Of A K+ Selective Nak Mutant
pdb|3OUF|B Chain B, Structure Of A K+ Selective Nak Mutant
Length = 97
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 28/50 (56%)
Query: 48 FTETSLWIRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGL 97
F T +R I A+Y+S+ T+TTVGYGD IF I Y+ +GL
Sbjct: 24 FYSTVEGLRPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGL 73
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 33/111 (29%), Positives = 48/111 (43%), Gaps = 21/111 (18%)
Query: 323 GEEDGDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLV 382
G +DG+ L A G+A + +LL D + G TPLH+AA GH E V +
Sbjct: 5 GSKDGN----TPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKL 60
Query: 383 LLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRIL 433
LL ++V+ R +GNT A + HH I ++L
Sbjct: 61 LLAKGADVNAR-----------------SKDGNTPEHLAKKNGHHEIVKLL 94
Score = 37.0 bits (84), Expect = 0.028, Method: Composition-based stats.
Identities = 35/145 (24%), Positives = 52/145 (35%), Gaps = 48/145 (33%)
Query: 360 GDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALW 419
G G TPLH AA GH E V LL ++V+ R +GNT L
Sbjct: 5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARS-----------------KDGNTPLH 47
Query: 420 EAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGR 479
A + H I ++L + G +V+++ + G
Sbjct: 48 LAAKNGHAEIVKLL-------------------------------LAKGADVNARSKDGN 76
Query: 480 TAIEIAMAENNVEMVNFLVMNGSDV 504
T +A + E+V L G+DV
Sbjct: 77 TPEHLAKKNGHHEIVKLLDAKGADV 101
Score = 33.1 bits (74), Expect = 0.45, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 449 LCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGAN 508
L A K +++L+ G +V+++ + G T + +A + E+V L+ G+DV +
Sbjct: 13 LHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARS 72
Query: 509 KCEFSSTNLNDMLQKREIGHRI 530
K N + L K+ H I
Sbjct: 73 K----DGNTPEHLAKKNGHHEI 90
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/62 (41%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 338 VASTGNAAFLDEL---LKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKH-ASNVHLR 393
+ A FLD L L+ + D +I D++G PLH+AA +GH V L+KH ASNV R
Sbjct: 74 IHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHR 133
Query: 394 DY 395
++
Sbjct: 134 NH 135
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 29/59 (49%)
Query: 336 LTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRD 394
L V GN LL +PD+ D G +H AA G + + LL++ ++V++ D
Sbjct: 42 LQVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIED 100
>pdb|4H33|A Chain A, Crystal Structure Of A Voltage-gated K+ Channel Pore
Module In A Closed State In Lipid Membranes, Tetragonal
Crystal Form
pdb|4H37|A Chain A, Crystal Structure Of A Voltage-gated K+ Channel Pore
Domain In A Closed State In Lipid Membranes
pdb|4H37|B Chain B, Crystal Structure Of A Voltage-gated K+ Channel Pore
Domain In A Closed State In Lipid Membranes
Length = 137
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 27/52 (51%)
Query: 57 YISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNL 108
Y A++W+I T TTVGYGD+ V + I MLF + + +TN
Sbjct: 44 YPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNF 95
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/62 (41%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 338 VASTGNAAFLDEL---LKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKH-ASNVHLR 393
+ A FLD L L+ + D +I D++G PLH+AA +GH V L+KH ASNV R
Sbjct: 74 IHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHR 133
Query: 394 DY 395
++
Sbjct: 134 NH 135
Score = 30.8 bits (68), Expect = 2.0, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 28/59 (47%)
Query: 336 LTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRD 394
L V GN LL +PD+ D G +H AA G + + LL+ ++V++ D
Sbjct: 42 LQVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIED 100
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/62 (41%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 338 VASTGNAAFLDEL---LKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKH-ASNVHLR 393
+ A FLD L L+ + D +I D++G PLH+AA +GH V L+KH ASNV R
Sbjct: 74 IHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHR 133
Query: 394 DY 395
++
Sbjct: 134 NH 135
Score = 30.8 bits (68), Expect = 2.0, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 28/59 (47%)
Query: 336 LTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRD 394
L V GN LL +PD+ D G +H AA G + + LL+ ++V++ D
Sbjct: 42 LQVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIED 100
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/62 (41%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 338 VASTGNAAFLDEL---LKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKH-ASNVHLR 393
+ A FLD L L+ + D +I D++G PLH+AA +GH V L+KH ASNV R
Sbjct: 74 IHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHR 133
Query: 394 DY 395
++
Sbjct: 134 NH 135
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 28/59 (47%)
Query: 336 LTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRD 394
L V GN LL +PD+ D G +H AA G + + LL+ ++V++ D
Sbjct: 42 LQVMKLGNPEIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIED 100
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/58 (43%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 339 ASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKH-ASNVHLRDY 395
A G L LL+ + D +I D++G PLH+AA +GH V L+KH ASNV R++
Sbjct: 78 ARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNH 135
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 28/59 (47%)
Query: 336 LTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRD 394
L V GN LL +PD+ D G +H AA G + + LL+ ++V++ D
Sbjct: 42 LQVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIED 100
>pdb|3TET|A Chain A, Crystal Structure Of Nak2k Channel Y66f Mutant
pdb|3TET|B Chain B, Crystal Structure Of Nak2k Channel Y66f Mutant
Length = 97
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 28/50 (56%)
Query: 48 FTETSLWIRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGL 97
F T +R I A+Y+S+ T+TTVG+GD IF I Y+ +GL
Sbjct: 24 FYSTVEGLRPIDALYFSVVTLTTVGFGDFSPQTDFGKIFTILYIFIGIGL 73
>pdb|3T4D|A Chain A, Crystal Structure Of Nak2k Channel Y55f Mutant
pdb|3T4D|B Chain B, Crystal Structure Of Nak2k Channel Y55f Mutant
Length = 97
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 28/50 (56%)
Query: 48 FTETSLWIRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGL 97
F T +R I A+++S+ T+TTVGYGD IF I Y+ +GL
Sbjct: 24 FYSTVEGLRPIDALFFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGL 73
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 40/72 (55%), Gaps = 8/72 (11%)
Query: 350 LLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRD-YIIFMYNLSYDIII 408
LLK D + D+ G TPLH+ A GH E V VLLKH ++V+ +D + +++S D
Sbjct: 66 LLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISID--- 122
Query: 409 LLDMNGNTALWE 420
NGN L E
Sbjct: 123 ----NGNEDLAE 130
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 68/168 (40%), Gaps = 48/168 (28%)
Query: 330 NMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASN 389
++ LL A G + L+ D + D G TPLH+AA H E V VLLK+ ++
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGAD 72
Query: 390 VHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLL 449
V+ D I G T L H A+
Sbjct: 73 VNAIDAI-----------------GETPL----------------HLVAM---------- 89
Query: 450 CTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFL 497
+ ++E L+K+G +V+++D+ G+TA +I++ N ++ L
Sbjct: 90 -----YGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 28/41 (68%)
Query: 464 LVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDV 504
L+ G +V+++D+ G T + +A +++E+V L+ NG+DV
Sbjct: 33 LMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADV 73
>pdb|3TCU|A Chain A, Crystal Structure Of Nak2k Channel D68e Mutant
pdb|3TCU|B Chain B, Crystal Structure Of Nak2k Channel D68e Mutant
Length = 97
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 28/50 (56%)
Query: 48 FTETSLWIRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGL 97
F T +R I A+Y+S+ T+TTVGYG+ IF I Y+ +GL
Sbjct: 24 FYSTVEGLRPIDALYFSVVTLTTVGYGEFSPQTDFGKIFTILYIFIGIGL 73
>pdb|3T4Z|A Chain A, Crystal Structure Of Nak2k Channel Y55w Mutant
pdb|3T4Z|B Chain B, Crystal Structure Of Nak2k Channel Y55w Mutant
Length = 97
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 28/50 (56%)
Query: 48 FTETSLWIRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGL 97
F T +R I A+++S+ T+TTVGYGD IF I Y+ +GL
Sbjct: 24 FYSTVEGLRPIDALWFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGL 73
>pdb|3T1C|A Chain A, Crystal Structure Of Nak Channel D66y Mutant
pdb|3T1C|B Chain B, Crystal Structure Of Nak Channel D66y Mutant
Length = 97
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 28/50 (56%)
Query: 48 FTETSLWIRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGL 97
F T +R I A+Y+S+ T+TTVGYG+ IF I Y+ +GL
Sbjct: 24 FYSTVEGLRPIDALYFSVVTLTTVGYGNFSPQTDFGKIFTILYIFIGIGL 73
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 62/143 (43%), Gaps = 20/143 (13%)
Query: 365 RTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISS 424
R+PLH AA GH + +L++ +N I + T L EA +
Sbjct: 12 RSPLHAAAEAGHVDICHMLVQAGAN-----------------IDTCSEDQRTPLMEAAEN 54
Query: 425 KHHSIFRILYHCTAISDPYTAGDLLC--TAEKRNDMSVMEELVKYG-LNVDSKDRHGRTA 481
H + L A+ DP A C A K+ V++ L+ G ++V+ +D G T
Sbjct: 55 NHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTP 114
Query: 482 IEIAMAENNVEMVNFLVMNGSDV 504
+ A +V++V L+ GSD+
Sbjct: 115 MIWATEYKHVDLVKLLLSKGSDI 137
Score = 35.8 bits (81), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 71/177 (40%), Gaps = 18/177 (10%)
Query: 335 LLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRD 394
L+ A + + L+KA D D++G T LH+AA KGH E V LL
Sbjct: 48 LMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLS--------- 98
Query: 395 YIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLLC--TA 452
N D+ D +W A KH + ++L + + + +C A
Sbjct: 99 ------NGQMDVNCQDDGGWTPMIW-ATEYKHVDLVKLLLSKGSDINIRDNEENICLHWA 151
Query: 453 EKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANK 509
+ + E L+ ++ + + HG + + IA EN + V + SDV NK
Sbjct: 152 AFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNK 208
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%)
Query: 328 DPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHA 387
D ++ L A +G + LL A+ D + G +PLHIAA + +CV++ L
Sbjct: 141 DNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRD 200
Query: 388 SNVHLRD 394
S+V L++
Sbjct: 201 SDVTLKN 207
>pdb|3ETQ|A Chain A, X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 C-
Terminal Region From Amino Acids 443-630 Including
C508n, C584s, And C601s Mutations
pdb|3ETQ|B Chain B, X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 C-
Terminal Region From Amino Acids 443-630 Including
C508n, C584s, And C601s Mutations
Length = 204
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/180 (19%), Positives = 78/180 (43%), Gaps = 6/180 (3%)
Query: 111 EGTRRTMEFRNSIEAASNFVGRNRLPPRLKKQILAYMCLRFKAESLNQHQLIEQLPKSIC 170
+ +RR +++ + ++ ++LP +++I Y R++ + ++ ++ +L +
Sbjct: 7 DSSRR--QYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQGKMFDEDSILGELNGPLR 64
Query: 171 KSICQHLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSG 230
+ I V + LF + + ++ K+K E P + +I + +Y I G
Sbjct: 65 EEIVNFNNRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHG 124
Query: 231 EVEMIDYEMEKEIAVGTLQTGDMFGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQ 290
V ++ + KE+ L G FGE+ L + + R T S+L L E ++
Sbjct: 125 VVSVLT-KGNKEMK---LSDGSYFGEISLLTRGRRTASVRADTYSRLYSLSVDNFNEVLE 180
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 68/260 (26%), Positives = 97/260 (37%), Gaps = 74/260 (28%)
Query: 335 LLTVASTGNAAFLDELLKARLDP-----DIGDSKGRTPLHIAASKGHEECVLVLLKHASN 389
LL A +GN +E L A L P D + TPLH+AA V +LL+H ++
Sbjct: 28 LLEAARSGN----EEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGAD 83
Query: 390 VHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLL 449
VH +D G L A S H+
Sbjct: 84 VHAKD-----------------KGGLVPLHNACSYGHYE--------------------- 105
Query: 450 CTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANK 509
V E L+K+G V++ D T + A ++N VE+ + L+ +G+D N
Sbjct: 106 ----------VTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVN- 154
Query: 510 CEFSSTNLNDMLQKREIGHRITV----HDDNSTQNEVLLKK------LEIIDFEAKEGKS 559
C S DM E+ R+T H E L K LEII+F+ +
Sbjct: 155 CHGKSA--VDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHE 212
Query: 560 KGGNCQRVSIYRGHPLVRKQ 579
+C S+ HP RKQ
Sbjct: 213 TALHCAVASL---HP-KRKQ 228
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 19/77 (24%)
Query: 366 TPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSK 425
TPLH+AA + H + + VL KH + ++ LD G TAL A +
Sbjct: 249 TPLHVAAERAHNDVMEVLHKHGAKMN-----------------ALDSLGQTALHRAALAG 291
Query: 426 HHSIFRILYHCTAISDP 442
H R+L + SDP
Sbjct: 292 HLQTCRLLL--SYGSDP 306
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%)
Query: 449 LCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSD 503
L A +R VME L K+G +++ D G+TA+ A +++ L+ GSD
Sbjct: 251 LHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSD 305
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 35/59 (59%)
Query: 336 LTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRD 394
L V G+ A ELLK P++ D+ G +P+H AA G + + VL++H ++V++ D
Sbjct: 40 LQVMMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPD 98
Score = 33.1 bits (74), Expect = 0.41, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 339 ASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRD 394
A TG L L++ D ++ D G P+H+A +GH V+ L S++H RD
Sbjct: 76 ARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGH-TAVVSFLAAESDLHRRD 130
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 35/59 (59%)
Query: 336 LTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRD 394
L V G+ A ELLK P++ D+ G +P+H AA G + + VL++H ++V++ D
Sbjct: 46 LQVMMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPD 104
Score = 33.1 bits (74), Expect = 0.43, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 339 ASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRD 394
A TG L L++ D ++ D G P+H+A +GH V+ L S++H RD
Sbjct: 82 ARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGH-TAVVSFLAAESDLHRRD 136
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 6/93 (6%)
Query: 330 NMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASN 389
++ LL A G + L+ D + D G TPLH+AA +GH E V VLLK ++
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 390 VHLRDYIIFMYNLSYDIIILLDMNGNTALWEAI 422
V+ +D ++DI I NGN L E +
Sbjct: 61 VNAQDK---FGKTAFDISI---DNGNEDLAEIL 87
Score = 33.9 bits (76), Expect = 0.25, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 29/46 (63%)
Query: 464 LVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANK 509
L+ G +V++KD+ G T + +A E ++E+V L+ G+DV +K
Sbjct: 21 LMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDK 66
Score = 30.4 bits (67), Expect = 2.9, Method: Composition-based stats.
Identities = 29/103 (28%), Positives = 45/103 (43%), Gaps = 17/103 (16%)
Query: 285 LIEAMQSKQEDNVSILKNFLQQHKKLKDLNIGDLIAESGEEDGDPNMSVNLLTVASTGNA 344
L+EA ++ Q+D V IL N D+ A+ D + L A G+
Sbjct: 6 LLEAARAGQDDEVRILM-----------ANGADVNAK------DKDGYTPLHLAAREGHL 48
Query: 345 AFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHA 387
++ LLKA D + D G+T I+ G+E+ +L K A
Sbjct: 49 EIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAEILQKAA 91
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 77/186 (41%), Gaps = 36/186 (19%)
Query: 350 LLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDI--- 406
L KA DP I + R+ LH AA+ RD+ +Y L+
Sbjct: 185 LXKAGADPTIYNKSERSALHQAAAN------------------RDFGXXVYXLNSTKLKG 226
Query: 407 -IILLDMNGNTAL--------WEAISSKH---HSIFRILYHCTAISDP--YTAGDLLCTA 452
I LD NG TAL + ++S ++ Y A D Y L A
Sbjct: 227 DIEELDRNGXTALXIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYA 286
Query: 453 EKRNDMSVMEELV-KYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCE 511
+ ++ +++ LV + G N D +D G+T I +A E +E+V +L+ G+ V + +
Sbjct: 287 AQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGASVEAVDATD 346
Query: 512 FSSTNL 517
++ L
Sbjct: 347 HTARQL 352
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 10/93 (10%)
Query: 429 IFRILYHCTAISDPYTAG-DLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMA 487
+ RI+Y S P G L A +++ LV++G+NV++ D G T + A +
Sbjct: 53 VQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAAS 112
Query: 488 ENNVEMVNFLVMNGSDV---------VGANKCE 511
NNV++ FLV +G+ V A+KCE
Sbjct: 113 CNNVQVCKFLVESGAAVFAMTYSDMQTAADKCE 145
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 356 DPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRD 394
DP + + +G T LH A GH E V L++ NV+ D
Sbjct: 62 DPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAAD 100
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 10/93 (10%)
Query: 429 IFRILYHCTAISDPYTAG-DLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMA 487
+ RI+Y S P G L A +++ LV++G+NV++ D G T + A +
Sbjct: 53 VQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAAS 112
Query: 488 ENNVEMVNFLVMNGSDV---------VGANKCE 511
NNV++ FLV +G+ V A+KCE
Sbjct: 113 CNNVQVCKFLVESGAAVFAMTYSDMQTAADKCE 145
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 356 DPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRD 394
DP + + +G T LH A GH E V L++ NV+ D
Sbjct: 62 DPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAAD 100
>pdb|3T2M|A Chain A, Crystal Structure Of Nak Channel N68d Mutant
pdb|3T2M|B Chain B, Crystal Structure Of Nak Channel N68d Mutant
Length = 97
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 27/50 (54%)
Query: 48 FTETSLWIRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGL 97
F T +R I A+Y+S+ T+TTVG GD IF I Y+ +GL
Sbjct: 24 FYSTVEGLRPIDALYFSVVTLTTVGDGDFSPQTDFGKIFTILYIFIGIGL 73
>pdb|4DIN|B Chain B, Novel Localization And Quaternary Structure Of The Pka Ri
Beta Holoenzyme
Length = 381
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 6/106 (5%)
Query: 212 EDVIMQNEAPDDVYIIVSGEVEMIDYEMEKE--IAVGTLQTGDMFGEVGALCCRPQIYTY 269
E +++Q E DD YII G ++ E + VG L D FGE+ L RP+ T
Sbjct: 280 EKIVVQGEPGDDFYIITEGTASVLQRRSPNEEYVEVGRLGPSDYFGEIALLLNRPRAATV 339
Query: 270 RTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHKKLKDLNI 315
+ + ++L + E ILK +Q++ L +
Sbjct: 340 VARGPLKCVKLDRPRFERVLGPCSE----ILKRNIQRYNSFISLTV 381
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 56/132 (42%), Gaps = 28/132 (21%)
Query: 212 EDVIMQNEAPDDVYIIVSGEVEM-IDYEMEKEIAVGTLQTGDMFGEVGALCCRPQIYTYR 270
E VI Q D+ Y++ GEV++ ++ E V + G FGE+ + P+ T +
Sbjct: 162 ETVIQQGNEGDNFYVVDQGEVDVYVNGEW-----VTNISEGGSFGELALIYGTPRAATVK 216
Query: 271 TKTLSQLL--------------RLKTSALIEAMQSKQEDNVSILKNFLQQHKKLKDLNIG 316
KT +L L+ + E SK VSIL++ +K + L +
Sbjct: 217 AKTDLKLWGIDRDSYRRILMGSTLRKRKMYEEFLSK----VSILESL----EKWERLTVA 268
Query: 317 DLIAESGEEDGD 328
D + EDG+
Sbjct: 269 DALEPVQFEDGE 280
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 336 LTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRD 394
L V G+ A ELLK P++ D+ G +P+H AA G + + VL++H ++V+ D
Sbjct: 48 LQVMMFGSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALD 106
Score = 32.0 bits (71), Expect = 0.99, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 339 ASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRD 394
A TG L L++ D + DS G P+H+A +GH V+ L S++H RD
Sbjct: 84 ARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSS-VVSFLAPESDLHHRD 138
>pdb|1Q3E|A Chain A, Hcn2j 443-645 In The Presence Of Cgmp
pdb|1Q3E|B Chain B, Hcn2j 443-645 In The Presence Of Cgmp
Length = 207
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/182 (18%), Positives = 78/182 (42%), Gaps = 6/182 (3%)
Query: 109 VVEGTRRTMEFRNSIEAASNFVGRNRLPPRLKKQILAYMCLRFKAESLNQHQLIEQLPKS 168
++ +RR +++ + ++ ++LP +++I Y R++ + ++ ++ +L
Sbjct: 3 AMDSSRR--QYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQGKMFDEDSILGELNGP 60
Query: 169 ICKSICQHLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIV 228
+ + I V + LF + + ++ K+K E P + +I + +Y I
Sbjct: 61 LREEIVNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQ 120
Query: 229 SGEVEMIDYEMEKEIAVGTLQTGDMFGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEA 288
G V ++ + KE+ L G FGE+ L + + R T +L L E
Sbjct: 121 HGVVSVLT-KGNKEM---KLSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEV 176
Query: 289 MQ 290
++
Sbjct: 177 LE 178
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 336 LTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRD 394
L V G+ A ELLK P++ D+ G +P+H AA G + + VL++H ++V+ D
Sbjct: 46 LQVMMFGSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALD 104
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 339 ASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRD 394
A TG L L++ D + DS G P+H+A +GH V+ L S++H RD
Sbjct: 82 ARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSS-VVSFLAPESDLHHRD 136
>pdb|3BPZ|A Chain A, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|B Chain B, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|C Chain C, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|D Chain D, Hcn2-I 443-460 E502k In The Presence Of Camp
Length = 202
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/182 (18%), Positives = 78/182 (42%), Gaps = 6/182 (3%)
Query: 109 VVEGTRRTMEFRNSIEAASNFVGRNRLPPRLKKQILAYMCLRFKAESLNQHQLIEQLPKS 168
++ +RR +++ + ++ ++LP +++I Y R++ + ++ ++ +L
Sbjct: 3 AMDSSRR--QYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQGKMFDEDSILGELNGP 60
Query: 169 ICKSICQHLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIV 228
+ + I V + LF + + ++ K+K E P + +I + +Y I
Sbjct: 61 LREKIVNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQ 120
Query: 229 SGEVEMIDYEMEKEIAVGTLQTGDMFGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEA 288
G V ++ + KE+ L G FGE+ L + + R T +L L E
Sbjct: 121 HGVVSVLT-KGNKEM---KLSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEV 176
Query: 289 MQ 290
++
Sbjct: 177 LE 178
>pdb|2Q0A|A Chain A, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
pdb|2Q0A|B Chain B, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
Length = 200
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/180 (18%), Positives = 77/180 (42%), Gaps = 6/180 (3%)
Query: 111 EGTRRTMEFRNSIEAASNFVGRNRLPPRLKKQILAYMCLRFKAESLNQHQLIEQLPKSIC 170
+ +RR +++ + ++ ++LP +++I Y R++ + ++ ++ +L +
Sbjct: 3 DSSRR--QYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQGKMFDEDSILGELNGPLR 60
Query: 171 KSICQHLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSG 230
+ I V + LF + + ++ K+K E P + +I + +Y I G
Sbjct: 61 EEIVNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHG 120
Query: 231 EVEMIDYEMEKEIAVGTLQTGDMFGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQ 290
V ++ + KE+ L G FGE+ L + + R T +L L E ++
Sbjct: 121 VVSVLT-KGNKEMK---LSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVLE 176
>pdb|3FFQ|A Chain A, Hcn2i 443-640 Apo-State
pdb|3FFQ|B Chain B, Hcn2i 443-640 Apo-State
Length = 202
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/182 (18%), Positives = 78/182 (42%), Gaps = 6/182 (3%)
Query: 109 VVEGTRRTMEFRNSIEAASNFVGRNRLPPRLKKQILAYMCLRFKAESLNQHQLIEQLPKS 168
++ +RR +++ + ++ ++LP +++I Y R++ + ++ ++ +L
Sbjct: 3 AMDSSRR--QYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQGKMFDEDSILGELNGP 60
Query: 169 ICKSICQHLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIV 228
+ + I V + LF + + ++ K+K E P + +I + +Y I
Sbjct: 61 LREEIVNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQ 120
Query: 229 SGEVEMIDYEMEKEIAVGTLQTGDMFGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEA 288
G V ++ + KE+ L G FGE+ L + + R T +L L E
Sbjct: 121 HGVVSVLT-KGNKEM---KLSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEV 176
Query: 289 MQ 290
++
Sbjct: 177 LE 178
>pdb|1LNQ|A Chain A, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|B Chain B, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|C Chain C, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|D Chain D, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|E Chain E, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|F Chain F, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|G Chain G, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|H Chain H, Crystal Structure Of Mthk At 3.3 A
Length = 336
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Query: 42 GSVNPNFTETSLWIRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYL 101
G+ +F E W ++YW+ T+ TVGYGD + M F + ++ +G A
Sbjct: 34 GTAGFHFIEGESWT---VSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVA 90
Query: 102 IGNMTNLVVEGTRRTMEFRNSIEAASN 128
+ + ++ R M+ I+ A +
Sbjct: 91 VERLLEFLI--NREQMKLMGLIDVAKS 115
>pdb|1F6G|A Chain A, Potassium Channel (Kcsa) Full-Length Fold
pdb|1F6G|B Chain B, Potassium Channel (Kcsa) Full-Length Fold
pdb|1F6G|C Chain C, Potassium Channel (Kcsa) Full-Length Fold
pdb|1F6G|D Chain D, Potassium Channel (Kcsa) Full-Length Fold
Length = 160
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 14/86 (16%)
Query: 55 IRYISAMYWSITTMTTVGYGDLHAVN--------TVEMIFIIFYMLFNLGLTAYLIGNMT 106
I Y +A++WS+ T TTVGYGDL+ V V + I + L L + +G
Sbjct: 60 ITYPAALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWFVGR-- 117
Query: 107 NLVVEGTRRTMEFRNSIEAASNFVGR 132
E RR R+S +AA R
Sbjct: 118 ----EQERRGHFVRHSEKAAEEAYTR 139
>pdb|2Q68|A Chain A, Crystal Structure Of Nak Channel D66a, S70e Double
Mutants
pdb|2Q68|B Chain B, Crystal Structure Of Nak Channel D66a, S70e Double
Mutants
Length = 114
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 27/50 (54%)
Query: 48 FTETSLWIRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGL 97
F T +R I A+Y+S+ T+TTVG G+ IF I Y+ +GL
Sbjct: 41 FYSTVEGLRPIDALYFSVVTLTTVGAGNFEPQTDFGKIFTILYIFIGIGL 90
>pdb|3U10|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/181 (18%), Positives = 78/181 (43%), Gaps = 6/181 (3%)
Query: 110 VEGTRRTMEFRNSIEAASNFVGRNRLPPRLKKQILAYMCLRFKAESLNQHQLIEQLPKSI 169
++ +RR +++ + ++ ++LP +++I Y R++ + ++ ++ +L +
Sbjct: 7 MDSSRR--QYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQGKMFDEDSILGELNGPL 64
Query: 170 CKSICQHLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVS 229
+ I V + LF + + ++ K+K E P + +I + +Y I
Sbjct: 65 REEIVNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQH 124
Query: 230 GEVEMIDYEMEKEIAVGTLQTGDMFGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAM 289
G V ++ + KE+ L G FGE+ L + + R T +L L E +
Sbjct: 125 GVVSVLT-KGNKEMK---LSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVL 180
Query: 290 Q 290
+
Sbjct: 181 E 181
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 335 LLTVAS-TGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLR 393
LL +AS G+ ++ LL+ DP++ D G TPLH A + GH + V +LL+H + V+
Sbjct: 13 LLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTT 72
Query: 394 DY 395
Y
Sbjct: 73 GY 74
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 51/116 (43%), Gaps = 20/116 (17%)
Query: 355 LDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNG 414
+DP + +G T LHIA+ KG V LL++ S+ +++D+ G
Sbjct: 2 IDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHA-----------------G 43
Query: 415 NTALWEAISSKHHSIFRILYHCTAI--SDPYTAGDLLCTAEKRNDMSVMEELVKYG 468
T L EA + H + +L A+ + Y L A K + +++ L+ YG
Sbjct: 44 WTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYG 99
>pdb|2Q67|A Chain A, Crystal Structure Of Nak Channel D66a Mutant
pdb|2Q67|B Chain B, Crystal Structure Of Nak Channel D66a Mutant
Length = 114
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 27/50 (54%)
Query: 48 FTETSLWIRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGL 97
F T +R I A+Y+S+ T+TTVG G+ IF I Y+ +GL
Sbjct: 41 FYSTVEGLRPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGL 90
>pdb|2Q6A|A Chain A, Crystal Structure Of Nak Channel D66e Mutant
pdb|2Q6A|B Chain B, Crystal Structure Of Nak Channel D66e Mutant
Length = 114
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 27/50 (54%)
Query: 48 FTETSLWIRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGL 97
F T +R I A+Y+S+ T+TTVG G+ IF I Y+ +GL
Sbjct: 41 FYSTVEGLRPIDALYFSVVTLTTVGEGNFSPQTDFGKIFTILYIFIGIGL 90
>pdb|2Q69|A Chain A, Crystal Structure Of Nak Channel D66n Mutant
pdb|2Q69|B Chain B, Crystal Structure Of Nak Channel D66n Mutant
Length = 114
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 27/50 (54%)
Query: 48 FTETSLWIRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGL 97
F T +R I A+Y+S+ T+TTVG G+ IF I Y+ +GL
Sbjct: 41 FYSTVEGLRPIDALYFSVVTLTTVGNGNFSPQTDFGKIFTILYIFIGIGL 90
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 71/298 (23%), Positives = 119/298 (39%), Gaps = 54/298 (18%)
Query: 191 VSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVG---- 246
+S+E IV L+ + A+ + + +N A + ++G V+++ + K V
Sbjct: 69 MSREDIVELLLRHGADPVLRK-----KNGATPFILAAIAGSVKLLKLFLSKGADVNECDF 123
Query: 247 ----TLQTGDMFGEVGALCC---RPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSI 299
++G+V AL R R KT RL+ M + ++ +V +
Sbjct: 124 YGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEV 183
Query: 300 LKNFLQQHKKLKDLNIGDLIAESGEEDGDPNMSVN-----LLTVASTGNAAFLDELLKAR 354
LK L + D+N D NM N LL+ + A LL
Sbjct: 184 LKILLDEMGA--DVNACD------------NMGRNALIHALLSSDDSDVEAITHLLLDHG 229
Query: 355 LDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNG 414
D ++ +G+TPL +A K H V LL+ ++ + D D +G
Sbjct: 230 ADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ-EHIEINDT---------------DSDG 273
Query: 415 NTALWEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVD 472
TAL A+ K I +L A +D GDL+ TA + D S+++ L+ +G D
Sbjct: 274 KTALLLAVELKLKKIAELLCKRGASTD---CGDLVMTARRNYDHSLVKVLLSHGAKED 328
>pdb|2QCS|B Chain B, A Complex Structure Between The Catalytic And Regulatory
Subunit Of Protein Kinase A That Represents The
Inhibited State
Length = 291
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 48/106 (45%), Gaps = 6/106 (5%)
Query: 212 EDVIMQNEAPDDVYIIVSGEVEMIDYEMEKE--IAVGTLQTGDMFGEVGALCCRPQIYTY 269
+ +++Q E D+ +II+ G ++ E E + VG L D FGE+ L RP+ T
Sbjct: 189 QKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYFGEIALLMNRPKAATV 248
Query: 270 RTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHKKLKDLNI 315
+ + ++L + + ILK +QQ+ L++
Sbjct: 249 VARGPLKCVKLDRPRFERVLGPCSD----ILKRNIQQYNSFVSLSV 290
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 212 EDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFGEVGALCCRPQIYTYRT 271
E VI Q + D+ Y+I GE +D + E A ++ G FGE+ + P+ T +
Sbjct: 71 ETVIQQGDEGDNFYVIDQGE---MDVYVNNEWAT-SVGEGGSFGELALIYGTPRAATVKA 126
Query: 272 KT 273
KT
Sbjct: 127 KT 128
>pdb|1RL3|A Chain A, Crystal Structure Of Camp-free R1a Subunit Of Pka
pdb|1RL3|B Chain B, Crystal Structure Of Camp-free R1a Subunit Of Pka
pdb|1RGS|A Chain A, Regulatory Subunit Of Camp Dependent Protein Kinase
Length = 288
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 48/106 (45%), Gaps = 6/106 (5%)
Query: 212 EDVIMQNEAPDDVYIIVSGEVEMIDYEMEKE--IAVGTLQTGDMFGEVGALCCRPQIYTY 269
+ +++Q E D+ +II+ G ++ E E + VG L D FGE+ L RP+ T
Sbjct: 187 QKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYFGEIALLMNRPRAATV 246
Query: 270 RTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHKKLKDLNI 315
+ + ++L + + ILK +QQ+ L++
Sbjct: 247 VARGPLKCVKLDRPRFERVLGPCSD----ILKRNIQQYNSFVSLSV 288
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 212 EDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFGEVGALCCRPQIYTYRT 271
E VI Q + D+ Y+I GE +D + E A ++ G FGE+ + P+ T +
Sbjct: 69 ETVIQQGDEGDNFYVIDQGE---MDVYVNNEWAT-SVGEGGSFGELALIYGTPRAATVKA 124
Query: 272 KT 273
KT
Sbjct: 125 KT 126
>pdb|3EFF|K Chain K, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
pdb|3EFF|L Chain L, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
pdb|3EFF|M Chain M, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
pdb|3EFF|N Chain N, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
Length = 139
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 38/86 (44%), Gaps = 14/86 (16%)
Query: 55 IRYISAMYWSITTMTTVGYGDLHAVN--------TVEMIFIIFYMLFNLGLTAYLIGNMT 106
I Y A++WS+ T TTVGYGDL+ V V + I + L L + +G
Sbjct: 39 ITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGR-- 96
Query: 107 NLVVEGTRRTMEFRNSIEAASNFVGR 132
E RR R+S +AA R
Sbjct: 97 ----EQERRGHFVRHSEKAAEEAYTR 118
>pdb|3E83|A Chain A, Crystal Structure Of The The Open Nak Channel Pore
pdb|3E83|B Chain B, Crystal Structure Of The The Open Nak Channel Pore
pdb|3E86|A Chain A, High Resolution Crystal Structure Of The Open Nak
Channel Pore
pdb|3E86|B Chain B, High Resolution Crystal Structure Of The Open Nak
Channel Pore
pdb|3E89|A Chain A, Crystal Structure Of The The Open Nak Channel-Low Na+
Complex
pdb|3E89|B Chain B, Crystal Structure Of The The Open Nak Channel-Low Na+
Complex
pdb|3E8B|A Chain A, Crystal Structure Of The The Open Nak Channel- Rb+
Complex
pdb|3E8B|B Chain B, Crystal Structure Of The The Open Nak Channel- Rb+
Complex
pdb|3E8F|A Chain A, Crystal Structure Of The The Open Nak Channel- K+BA2+
pdb|3E8F|B Chain B, Crystal Structure Of The The Open Nak Channel- K+BA2+
pdb|3E8G|A Chain A, Crystal Structure Of The The Open Nak Channel-Na+CA2+
COMPLEX
pdb|3E8G|B Chain B, Crystal Structure Of The The Open Nak Channel-Na+CA2+
COMPLEX
pdb|3E8H|A Chain A, Crystal Structure Of The The Open Nak Channel-K+ Complex
pdb|3E8H|B Chain B, Crystal Structure Of The The Open Nak Channel-K+ Complex
Length = 96
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 27/50 (54%)
Query: 48 FTETSLWIRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGL 97
F T +R I A+Y+S+ T+TTVG G+ IF I Y+ +GL
Sbjct: 23 FYSTVEGLRPIDALYFSVVTLTTVGDGNFSPQTDFGKIFTILYIFIGIGL 72
>pdb|2AHY|A Chain A, Na+ Complex Of The Nak Channel
pdb|2AHY|B Chain B, Na+ Complex Of The Nak Channel
pdb|2AHZ|A Chain A, K+ Complex Of The Nak Channel
pdb|2AHZ|B Chain B, K+ Complex Of The Nak Channel
Length = 110
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 27/50 (54%)
Query: 48 FTETSLWIRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGL 97
F T +R I A+Y+S+ T+TTVG G+ IF I Y+ +GL
Sbjct: 41 FYSTVEGLRPIDALYFSVVTLTTVGDGNFSPQTDFGKIFTILYIFIGIGL 90
>pdb|2A9H|A Chain A, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
pdb|2A9H|B Chain B, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
pdb|2A9H|C Chain C, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
pdb|2A9H|D Chain D, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
Length = 155
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 55 IRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAY 100
I Y A++WS+ T TTVGYGDL+ V + M+ G+T+Y
Sbjct: 83 ISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMV--AGITSY 126
>pdb|2P7T|C Chain C, Crystal Structure Of Kcsa Mutant
Length = 103
Score = 38.5 bits (88), Expect = 0.010, Method: Composition-based stats.
Identities = 15/25 (60%), Positives = 20/25 (80%)
Query: 55 IRYISAMYWSITTMTTVGYGDLHAV 79
I Y A++WS++T TTVGYGDL+ V
Sbjct: 39 ITYPRALWWSVSTATTVGYGDLYPV 63
>pdb|2A0L|A Chain A, Crystal Structure Of Kvap-33h1 Fv Complex
pdb|2A0L|B Chain B, Crystal Structure Of Kvap-33h1 Fv Complex
Length = 241
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 45 NPNFTETSLWIRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGN 104
+PN + S++ A++W++ T TTVGYGD+ + + I ML + LIG
Sbjct: 170 DPNSSIKSVF----DALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGT 225
Query: 105 MTNL 108
++N+
Sbjct: 226 VSNM 229
>pdb|3OGC|C Chain C, Kcsa E71a Variant In Presence Of Na+
Length = 131
Score = 38.1 bits (87), Expect = 0.012, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 55 IRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAY 100
I Y A++WS+ T TTVGYGDL+ V + + M+ G+T++
Sbjct: 67 ITYPRALWWSVATATTVGYGDLYPVTLWGRLVAVVVMV--AGITSF 110
>pdb|1NE4|A Chain A, Crystal Structure Of Rp-Camp Binding R1a Subunit Of Camp-
Dependent Protein Kinase
pdb|1NE6|A Chain A, Crystal Structure Of Sp-Camp Binding R1a Subunit Of Camp-
Dependent Protein Kinase
Length = 283
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 212 EDVIMQNEAPDDVYIIVSGEVEMIDYEMEKE--IAVGTLQTGDMFGEVGALCCRPQIYT 268
+ +++Q E D+ +II+ G ++ E E + VG L D FGE+ L RP+ T
Sbjct: 185 QKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYFGEIALLMNRPRAAT 243
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 212 EDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFGEVGALCCRPQIYTYRT 271
E VI Q + D+ Y+I GE +D + E A ++ G FGE+ + P+ T +
Sbjct: 67 ETVIQQGDEGDNFYVIDQGE---MDVYVNNEWAT-SVGEGGSFGELALIYGTPRAATVKA 122
Query: 272 KT 273
KT
Sbjct: 123 KT 124
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 38.1 bits (87), Expect = 0.014, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 6/93 (6%)
Query: 330 NMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASN 389
++ LL A G + L+ D D G TPLH+AA GH E V +LL+ ++
Sbjct: 5 DLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD 64
Query: 390 VHLRDYIIFMYNLSYDIIILLDMNGNTALWEAI 422
V+ +D ++DI I NGN L E +
Sbjct: 65 VNAQDK---FGKTAFDISI---DNGNEDLAEIL 91
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 28/46 (60%)
Query: 464 LVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANK 509
L+ G +V +KD++G T + +A ++E+V L+ G+DV +K
Sbjct: 25 LMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDK 70
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 17/99 (17%)
Query: 285 LIEAMQSKQEDNVSILKNFLQQHKKLKDLNIGDLIAESGEEDGDPNMSVNLLTVASTGNA 344
L+EA ++ Q+D V IL N D+ A+ D N S L A G+
Sbjct: 10 LLEAARAGQDDEVRILM-----------ANGADVAAK------DKNGSTPLHLAARNGHL 52
Query: 345 AFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVL 383
+ LL+A D + D G+T I+ G+E+ +L
Sbjct: 53 EVVKLLLEAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 91
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 38.1 bits (87), Expect = 0.014, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 6/93 (6%)
Query: 330 NMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASN 389
++ LL A G + L+ D D G TPLH+AA GH E V +LL+ ++
Sbjct: 23 DLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD 82
Query: 390 VHLRDYIIFMYNLSYDIIILLDMNGNTALWEAI 422
V +D ++DI I NGN L E +
Sbjct: 83 VXAQDK---FGKTAFDISI---DNGNEDLAEIL 109
Score = 33.1 bits (74), Expect = 0.51, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 28/46 (60%)
Query: 464 LVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANK 509
L+ G +V +KD++G T + +A ++E+V L+ G+DV +K
Sbjct: 43 LMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDK 88
Score = 30.4 bits (67), Expect = 2.9, Method: Composition-based stats.
Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 17/99 (17%)
Query: 285 LIEAMQSKQEDNVSILKNFLQQHKKLKDLNIGDLIAESGEEDGDPNMSVNLLTVASTGNA 344
L+EA ++ Q+D V IL N D+ A+ D N S L A G+
Sbjct: 28 LLEAARAGQDDEVRILM-----------ANGADVAAK------DKNGSTPLHLAARNGHL 70
Query: 345 AFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVL 383
+ LL+A D D G+T I+ G+E+ +L
Sbjct: 71 EVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
>pdb|3RBZ|A Chain A, Mthk Channel, Ca2+-Bound
pdb|3RBZ|B Chain B, Mthk Channel, Ca2+-Bound
pdb|3RBZ|C Chain C, Mthk Channel, Ca2+-Bound
pdb|3RBZ|D Chain D, Mthk Channel, Ca2+-Bound
Length = 340
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 5/87 (5%)
Query: 42 GSVNPNFTETSLWIRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYL 101
G+ +F E W ++YW+ T+ TVGYGD + M F + ++ + A
Sbjct: 34 GTAGFHFIEGESWT---VSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIATFAVA 90
Query: 102 IGNMTNLVVEGTRRTMEFRNSIEAASN 128
+ + ++ R M+ I+ A +
Sbjct: 91 VARLLTFLI--NREQMKLIGLIDVAKS 115
>pdb|2ATK|C Chain C, Structure Of A Mutant Kcsa K+ Channel
Length = 124
Score = 38.1 bits (87), Expect = 0.015, Method: Composition-based stats.
Identities = 15/25 (60%), Positives = 19/25 (76%)
Query: 55 IRYISAMYWSITTMTTVGYGDLHAV 79
I Y A++WS+ T TTVGYGDL+ V
Sbjct: 60 ITYPRALWWSVATATTVGYGDLYPV 84
>pdb|1ZWI|C Chain C, Structure Of Mutant Kcsa Potassium Channel
Length = 103
Score = 38.1 bits (87), Expect = 0.015, Method: Composition-based stats.
Identities = 15/25 (60%), Positives = 19/25 (76%)
Query: 55 IRYISAMYWSITTMTTVGYGDLHAV 79
I Y A++WS+ T TTVGYGDL+ V
Sbjct: 39 ITYPRALWWSVATATTVGYGDLYPV 63
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%)
Query: 335 LLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKH 386
L A+ G L L++AR D +I D G TPLH AA G EE +L+++
Sbjct: 203 LHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVEN 254
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 34/62 (54%)
Query: 443 YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGS 502
+ G + A D + L++ G +++ + G TA+ A ++NV+MV FLV NG+
Sbjct: 38 FDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGA 97
Query: 503 DV 504
++
Sbjct: 98 NI 99
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 24/32 (75%)
Query: 364 GRTPLHIAASKGHEECVLVLLKHASNVHLRDY 395
G T LH+AA+KG+ E + +L++ +V+++DY
Sbjct: 199 GGTALHVAAAKGYTEVLKLLIQARYDVNIKDY 230
>pdb|3IFX|A Chain A, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
pdb|3IFX|B Chain B, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
pdb|3IFX|C Chain C, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
pdb|3IFX|D Chain D, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
Length = 129
Score = 38.1 bits (87), Expect = 0.016, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 55 IRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAY 100
I Y A++WS+ T TTVGYGDL+ V + + M+ G+T++
Sbjct: 60 ITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMV--AGITSF 103
>pdb|3PJS|K Chain K, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
pdb|3PJS|L Chain L, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
pdb|3PJS|M Chain M, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
pdb|3PJS|N Chain N, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
Length = 166
Score = 38.1 bits (87), Expect = 0.016, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 55 IRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAY 100
I Y A++WS+ T TTVGYGDL+ V + + M+ G+T++
Sbjct: 66 ITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMV--AGITSF 109
>pdb|1ORQ|C Chain C, X-Ray Structure Of A Voltage-Dependent Potassium Channel
In Complex With An Fab
Length = 223
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 45 NPNFTETSLWIRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGN 104
+PN + S++ A++W++ T TTVGYGD+ + + I ML + LIG
Sbjct: 158 DPNSSIKSVF----DALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGT 213
Query: 105 MTNL 108
++N+
Sbjct: 214 VSNM 217
>pdb|3OR6|C Chain C, On The Structural Basis Of Modal Gating Behavior In
K+channels - E71q
Length = 103
Score = 37.7 bits (86), Expect = 0.019, Method: Composition-based stats.
Identities = 15/25 (60%), Positives = 19/25 (76%)
Query: 55 IRYISAMYWSITTMTTVGYGDLHAV 79
I Y A++WS+ T TTVGYGDL+ V
Sbjct: 39 ITYPRALWWSVQTATTVGYGDLYPV 63
>pdb|3OR7|C Chain C, On The Structural Basis Of Modal Gating Behavior In
K+channels - E71i
Length = 103
Score = 37.7 bits (86), Expect = 0.019, Method: Composition-based stats.
Identities = 15/25 (60%), Positives = 19/25 (76%)
Query: 55 IRYISAMYWSITTMTTVGYGDLHAV 79
I Y A++WS+ T TTVGYGDL+ V
Sbjct: 39 ITYPRALWWSVITATTVGYGDLYPV 63
>pdb|1JVM|A Chain A, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
pdb|1JVM|B Chain B, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
pdb|1JVM|C Chain C, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
pdb|1JVM|D Chain D, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
Length = 125
Score = 37.7 bits (86), Expect = 0.020, Method: Composition-based stats.
Identities = 15/25 (60%), Positives = 19/25 (76%)
Query: 55 IRYISAMYWSITTMTTVGYGDLHAV 79
I Y A++WS+ T TTVGYGDL+ V
Sbjct: 60 ITYPRALWWSVETATTVGYGDLYPV 84
>pdb|3F5W|C Chain C, Kcsa Potassium Channel In The Open-Inactivated State
With 32 A Opening At T112
pdb|3F7V|C Chain C, Kcsa Potassium Channel In The Open-Inactivated State
With 23 A Opening At T112
pdb|3F7Y|C Chain C, Kcsa Potassium Channel In The Partially Open State With
17 A Opening At T112
pdb|3FB5|C Chain C, Kcsa Potassium Channel In The Partially Open State With
14.5 A Opening At T112
pdb|3FB6|C Chain C, Kcsa Potassium Channel In The Partially Open State With
16 A Opening At T112
pdb|3FB8|C Chain C, Kcsa Potassium Channel In The Open-Conductive State With
20 At T112 In The Presence Of Rb+ Ion
pdb|3FB7|C Chain C, Open Kcsa Potassium Channel In The Presence Of Rb+ Ion
Length = 104
Score = 37.7 bits (86), Expect = 0.020, Method: Composition-based stats.
Identities = 15/25 (60%), Positives = 19/25 (76%)
Query: 55 IRYISAMYWSITTMTTVGYGDLHAV 79
I Y A++WS+ T TTVGYGDL+ V
Sbjct: 40 ITYPRALWWSVETATTVGYGDLYPV 64
>pdb|2JK5|C Chain C, Potassium Channel Kcsa In Complex With
Tetrabutylammonium In High K
pdb|2W0F|C Chain C, Potassium Channel Kcsa-Fab Complex With
Tetraoctylammonium
Length = 124
Score = 37.7 bits (86), Expect = 0.020, Method: Composition-based stats.
Identities = 15/25 (60%), Positives = 19/25 (76%)
Query: 55 IRYISAMYWSITTMTTVGYGDLHAV 79
I Y A++WS+ T TTVGYGDL+ V
Sbjct: 60 ITYPRALWWSVETATTVGYGDLYPV 84
>pdb|2NLJ|C Chain C, Potassium Channel Kcsa(M96v)-Fab Complex In Kcl
Length = 124
Score = 37.7 bits (86), Expect = 0.020, Method: Composition-based stats.
Identities = 15/25 (60%), Positives = 19/25 (76%)
Query: 55 IRYISAMYWSITTMTTVGYGDLHAV 79
I Y A++WS+ T TTVGYGDL+ V
Sbjct: 60 ITYPRALWWSVETATTVGYGDLYPV 84
>pdb|2HJF|C Chain C, Potassium Channel Kcsa-Fab Complex With
Tetrabutylammonium (Tba)
pdb|2DWD|C Chain C, Crystal Structure Of Kcsa-Fab-Tba Complex In Tl+
pdb|2DWE|C Chain C, Crystal Structure Of Kcsa-Fab-Tba Complex In Rb+
Length = 103
Score = 37.7 bits (86), Expect = 0.020, Method: Composition-based stats.
Identities = 15/25 (60%), Positives = 19/25 (76%)
Query: 55 IRYISAMYWSITTMTTVGYGDLHAV 79
I Y A++WS+ T TTVGYGDL+ V
Sbjct: 39 ITYPRALWWSVETATTVGYGDLYPV 63
>pdb|1J95|A Chain A, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
pdb|1J95|B Chain B, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
pdb|1J95|C Chain C, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
pdb|1J95|D Chain D, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
Length = 125
Score = 37.7 bits (86), Expect = 0.020, Method: Composition-based stats.
Identities = 15/25 (60%), Positives = 19/25 (76%)
Query: 55 IRYISAMYWSITTMTTVGYGDLHAV 79
I Y A++WS+ T TTVGYGDL+ V
Sbjct: 60 ITYPRALWWSVETATTVGYGDLYPV 84
>pdb|1K4D|C Chain C, Potassium Channel Kcsa-Fab Complex In Low Concentration
Of K+
pdb|1K4C|C Chain C, Potassium Channel Kcsa-Fab Complex In High Concentration
Of K+
pdb|1R3I|C Chain C, Potassium Channel Kcsa-Fab Complex In Rb+
pdb|1R3J|C Chain C, Potassium Channel Kcsa-Fab Complex In High Concentration
Of Tl+
pdb|1R3K|C Chain C, Potassium Channel Kcsa-Fab Complex In Low Concentration
Of Tl+
pdb|1R3L|C Chain C, Potassium Channel Kcsa-Fab Complex In Cs+
pdb|2BOB|C Chain C, Potassium Channel Kcsa-Fab Complex In Thallium With
Tetrabutylammonium (Tba)
pdb|2BOC|C Chain C, Potassium Channel Kcsa-Fab Complex In Thallium With
Tetraethylarsonium (Teas)
pdb|2HVJ|C Chain C, Crystal Structure Of Kcsa-fab-tba Complex In Low K+
pdb|2HVK|C Chain C, Crystal Structure Of The Kcsa-Fab-Tba Complex In High K+
pdb|2ITC|C Chain C, Potassium Channel Kcsa-Fab Complex In Sodium Chloride
pdb|2ITD|C Chain C, Potassium Channel Kcsa-Fab Complex In Barium Chloride
pdb|3GB7|C Chain C, Potassium Channel Kcsa-Fab Complex In Li+
pdb|3IGA|C Chain C, Potassium Channel Kcsa-Fab Complex In Li+ And K+
Length = 124
Score = 37.7 bits (86), Expect = 0.020, Method: Composition-based stats.
Identities = 15/25 (60%), Positives = 19/25 (76%)
Query: 55 IRYISAMYWSITTMTTVGYGDLHAV 79
I Y A++WS+ T TTVGYGDL+ V
Sbjct: 60 ITYPRALWWSVETATTVGYGDLYPV 84
>pdb|1BL8|A Chain A, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|1BL8|B Chain B, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|1BL8|C Chain C, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|1BL8|D Chain D, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|2QTO|A Chain A, An Anisotropic Model For Potassium Channel Kcsa
pdb|2QTO|B Chain B, An Anisotropic Model For Potassium Channel Kcsa
pdb|2QTO|C Chain C, An Anisotropic Model For Potassium Channel Kcsa
pdb|2QTO|D Chain D, An Anisotropic Model For Potassium Channel Kcsa
Length = 97
Score = 37.7 bits (86), Expect = 0.020, Method: Composition-based stats.
Identities = 15/25 (60%), Positives = 19/25 (76%)
Query: 55 IRYISAMYWSITTMTTVGYGDLHAV 79
I Y A++WS+ T TTVGYGDL+ V
Sbjct: 38 ITYPRALWWSVETATTVGYGDLYPV 62
>pdb|3BEH|A Chain A, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|B Chain B, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|C Chain C, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|D Chain D, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|2ZD9|A Chain A, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|B Chain B, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|C Chain C, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|D Chain D, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
Length = 355
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 43/224 (19%), Positives = 77/224 (34%), Gaps = 63/224 (28%)
Query: 60 AMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEF 119
AM+W++ T++T GYGD + + M+ +G+ G + + RR
Sbjct: 165 AMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFYQEVRR---- 220
Query: 120 RNSIEAASNFVGRNRLPPRLKKQILAYMCLRFKAESLNQHQLIEQLPKSICKSICQHLFL 179
+FV RN QL+ +P
Sbjct: 221 -------GDFV-RN-------------------------WQLVAAVP------------- 234
Query: 180 HTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEM 239
LF+ + ++V +V ++A +P + E D ++ +V G V +
Sbjct: 235 -------LFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPNP 287
Query: 240 EKEIAVGTLQTGDMFGEVGALCCRPQIYTYRTKTLSQLLRLKTS 283
+ L G FGE+ + P+ T T LL L ++
Sbjct: 288 VE------LGPGAFFGEMALISGEPRSATVSAATTVSLLSLHSA 325
>pdb|1Q43|A Chain A, Hcn2i 443-640 In The Presence Of Camp, Selenomethionine
Derivative
pdb|1Q43|B Chain B, Hcn2i 443-640 In The Presence Of Camp, Selenomethionine
Derivative
pdb|1Q5O|A Chain A, Hcn2j 443-645 In The Presence Of Camp, Selenomethionine
Derivative
Length = 207
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 33/182 (18%), Positives = 71/182 (39%), Gaps = 6/182 (3%)
Query: 109 VVEGTRRTMEFRNSIEAASNFVGRNRLPPRLKKQILAYMCLRFKAESLNQHQLIEQLPKS 168
++ +RR +++ + + ++LP +++I Y R++ + ++ ++ +L
Sbjct: 3 AMDSSRR--QYQEKYKQVEQYXSFHKLPADFRQKIHDYYEHRYQGKXFDEDSILGELNGP 60
Query: 169 ICKSICQHLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIV 228
+ + I V LF + + + K+K E P + +I + Y I
Sbjct: 61 LREEIVNFNCRKLVASXPLFANADPNFVTAXLTKLKFEVFQPGDYIIREGTIGKKXYFIQ 120
Query: 229 SGEVEMIDYEMEKEIAVGTLQTGDMFGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEA 288
G V + + K L G FGE+ L + + R T +L L E
Sbjct: 121 HGVVSV----LTKGNKEXKLSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEV 176
Query: 289 MQ 290
++
Sbjct: 177 LE 178
>pdb|3HPL|C Chain C, Kcsa E71h-F103a Mutant In The Closed State
Length = 124
Score = 37.4 bits (85), Expect = 0.025, Method: Composition-based stats.
Identities = 15/25 (60%), Positives = 19/25 (76%)
Query: 55 IRYISAMYWSITTMTTVGYGDLHAV 79
I Y A++WS+ T TTVGYGDL+ V
Sbjct: 60 ITYPRALWWSVHTATTVGYGDLYPV 84
>pdb|4F8A|A Chain A, Cyclic Nucleotide Binding-Homology Domain From Mouse Eag1
Potassium Channel
Length = 160
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
Query: 160 QLIEQLPKSICKSICQHLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNE 219
++++ PK + IC HL ++ F+ S + L + + + P + + E
Sbjct: 7 KVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGE 66
Query: 220 APDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFGEV 257
+ D + +VSG +E+I + + V L GD+FG+V
Sbjct: 67 SVDSLCFVVSGSLEVI----QDDEVVAILGKGDVFGDV 100
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 6/69 (8%)
Query: 350 LLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYI------IFMYNLS 403
LLK + D+ +++ TPL +AA +G E VLL H +N + D++ I +
Sbjct: 176 LLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMH 235
Query: 404 YDIIILLDM 412
+DI+ LLD+
Sbjct: 236 HDIVRLLDL 244
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 13/94 (13%)
Query: 292 KQEDNVSILKNFLQQHKKLKDLNIGDLIAESGEEDGDPNMSVNLLTVASTGNAAFLDELL 351
++ED +++ +F+ Q L N D E+ +++L S +AA LL
Sbjct: 31 EEEDAPAVISDFIYQGASLH--NQTDRTGET---------ALHLAARYSRSDAA--KRLL 77
Query: 352 KARLDPDIGDSKGRTPLHIAASKGHEECVLVLLK 385
+A D +I D+ GRTPLH A S + +L++
Sbjct: 78 EASADANIQDNMGRTPLHAAVSADAQGVFQILIR 111
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 66/146 (45%), Gaps = 20/146 (13%)
Query: 361 DSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWE 420
D G T LH+AA + LL+ +++ +++D + G T L
Sbjct: 54 DRTGETALHLAARYSRSDAAKRLLEASADANIQDNM-----------------GRTPLHA 96
Query: 421 AISSKHHSIFRILYHCTAI---SDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRH 477
A+S+ +F+IL A + + L A + ++E+L+ +V++ D
Sbjct: 97 AVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDL 156
Query: 478 GRTAIEIAMAENNVEMVNFLVMNGSD 503
G++A+ A A NNV+ L+ NG++
Sbjct: 157 GKSALHWAAAVNNVDAAVVLLKNGAN 182
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 9/95 (9%)
Query: 411 DMNGNTALWEAISSKHHSIFRILYHCTAIS------DPYTAGDLLCTAEKRNDMSVMEEL 464
D G T L A+++ +F+IL A + D T L A + ++E+L
Sbjct: 81 DNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTP---LILAARLAIEGMVEDL 137
Query: 465 VKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVM 499
+ ++++ D G+TA+ A A NN E VN L+M
Sbjct: 138 ITADADINAADNSGKTALHWAAAVNNTEAVNILLM 172
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 29/49 (59%)
Query: 346 FLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRD 394
+++L+ A D + D+ G+T LH AA+ + E V +LL H +N +D
Sbjct: 133 MVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQD 181
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 338 VASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYI- 396
A+ N ++ LL + D D K TPL +AA +G E LL + +N + D++
Sbjct: 158 AAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANREITDHMD 217
Query: 397 -----IFMYNLSYDIIILLD 411
+ L +DI+ LLD
Sbjct: 218 RLPRDVASERLHHDIVRLLD 237
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 6/69 (8%)
Query: 350 LLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYI------IFMYNLS 403
LLK + D+ +++ TPL +AA +G E VLL H +N + D++ I +
Sbjct: 176 LLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMH 235
Query: 404 YDIIILLDM 412
+DI+ LLD+
Sbjct: 236 HDIVRLLDL 244
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 13/94 (13%)
Query: 292 KQEDNVSILKNFLQQHKKLKDLNIGDLIAESGEEDGDPNMSVNLLTVASTGNAAFLDELL 351
++ED +++ +F+ Q L + + D +++L S +AA LL
Sbjct: 31 EEEDAPAVISDFIYQGASLHN-----------QTDRTGATALHLAAAYSRSDAA--KRLL 77
Query: 352 KARLDPDIGDSKGRTPLHIAASKGHEECVLVLLK 385
+A D +I D+ GRTPLH A S + +L++
Sbjct: 78 EASADANIQDNMGRTPLHAAVSADAQGVFQILIR 111
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 67/146 (45%), Gaps = 20/146 (13%)
Query: 361 DSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWE 420
D G T LH+AA+ + LL+ +++ +++D + G T L
Sbjct: 54 DRTGATALHLAAAYSRSDAAKRLLEASADANIQDNM-----------------GRTPLHA 96
Query: 421 AISSKHHSIFRILYHCTAI---SDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRH 477
A+S+ +F+IL A + + L A + ++E+L+ +V++ D
Sbjct: 97 AVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDL 156
Query: 478 GRTAIEIAMAENNVEMVNFLVMNGSD 503
G++A+ A A NNV+ L+ NG++
Sbjct: 157 GKSALHWAAAVNNVDAAVVLLKNGAN 182
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 6/68 (8%)
Query: 350 LLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYI------IFMYNLS 403
LLK + D+ ++K TPL +AA +G E VLL H +N + D++ I +
Sbjct: 141 LLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMH 200
Query: 404 YDIIILLD 411
+DI+ LLD
Sbjct: 201 HDIVRLLD 208
Score = 32.0 bits (71), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 350 LLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLK 385
LL+A D I D+ GRTPLH A S + +LL+
Sbjct: 41 LLEASADAXIQDNMGRTPLHAAVSADAQGVFQILLR 76
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%)
Query: 443 YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGS 502
Y G LL A +R+ V E L VD D G T + IA+ N++E+ L+ G+
Sbjct: 4 YEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGA 63
Query: 503 DV 504
D+
Sbjct: 64 DI 65
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 6/68 (8%)
Query: 350 LLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYI------IFMYNLS 403
LLK + D+ ++K TPL +AA +G E VLL H +N + D++ I +
Sbjct: 67 LLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMH 126
Query: 404 YDIIILLD 411
+DI+ LLD
Sbjct: 127 HDIVRLLD 134
>pdb|3UM7|A Chain A, Crystal Structure Of The Human Two Pore Domain K+ Ion
Channel Traak (K2p4.1)
pdb|3UM7|B Chain B, Crystal Structure Of The Human Two Pore Domain K+ Ion
Channel Traak (K2p4.1)
pdb|4I9W|A Chain A, Human Two Pore Domain K+ Channel Traak (k2p4.1) - Fab
Complex Structure
pdb|4I9W|B Chain B, Human Two Pore Domain K+ Channel Traak (k2p4.1) - Fab
Complex Structure
Length = 309
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
Query: 59 SAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTME 118
SA ++S T +TT+GYG++ +F IFY L + L L+ + G R
Sbjct: 118 SAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGV------GDRLGSS 171
Query: 119 FRNSIEAASNFVGRNRLPPRLKKQILAYMCL 149
R+ I + +PP L + + A + L
Sbjct: 172 LRHGIGHIEAIFLKWHVPPELVRVLSAMLFL 202
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 52/126 (41%), Gaps = 24/126 (19%)
Query: 11 VRFCDIILVHCAGCLYYLLADRYPHKGETWLGSVNPNFTETSL--WIRYISAMYWSITTM 68
VR +L GCL ++L P F + W + + A+Y+ I T+
Sbjct: 193 VRVLSAMLFLLIGCLLFVL---------------TPTFVFCYMEDWSK-LEAIYFVIVTL 236
Query: 69 TTVGYGDLHAV------NTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNS 122
TTVG+GD A + + F++L L A ++ + N + +RRT
Sbjct: 237 TTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLRVVSRRTRAEMGG 296
Query: 123 IEAASN 128
+ A SN
Sbjct: 297 LTAQSN 302
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 6/68 (8%)
Query: 350 LLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYI------IFMYNLS 403
LLK + D+ +++ TPL +AA +G E VLL H +N + D++ I +
Sbjct: 177 LLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMH 236
Query: 404 YDIIILLD 411
+DI+ LLD
Sbjct: 237 HDIVRLLD 244
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 13/94 (13%)
Query: 292 KQEDNVSILKNFLQQHKKLKDLNIGDLIAESGEEDGDPNMSVNLLTVASTGNAAFLDELL 351
++ED +++ +F+ Q L N D E+ +++L S +AA LL
Sbjct: 32 EEEDAPAVISDFIYQGASLH--NQTDRTGET---------ALHLAARYSRSDAA--KRLL 78
Query: 352 KARLDPDIGDSKGRTPLHIAASKGHEECVLVLLK 385
+A D +I D+ GRTPLH A S + +L++
Sbjct: 79 EASADANIQDNMGRTPLHAAVSADAQGVFQILIR 112
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 66/146 (45%), Gaps = 20/146 (13%)
Query: 361 DSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWE 420
D G T LH+AA + LL+ +++ +++D + G T L
Sbjct: 55 DRTGETALHLAARYSRSDAAKRLLEASADANIQDNM-----------------GRTPLHA 97
Query: 421 AISSKHHSIFRILYHCTAI---SDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRH 477
A+S+ +F+IL A + + L A + ++E+L+ +V++ D
Sbjct: 98 AVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDL 157
Query: 478 GRTAIEIAMAENNVEMVNFLVMNGSD 503
G++A+ A A NNV+ L+ NG++
Sbjct: 158 GKSALHWAAAVNNVDAAVVLLKNGAN 183
>pdb|3D0S|A Chain A, Camp Receptor Protein From M.Tuberculosis, Camp-Free Form
pdb|3D0S|B Chain B, Camp Receptor Protein From M.Tuberculosis, Camp-Free Form
pdb|4A2U|A Chain A, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|B Chain B, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|C Chain C, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|D Chain D, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|E Chain E, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|F Chain F, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|G Chain G, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|H Chain H, Crp(Cap) From Myco. Tuberculosis, With Camp
Length = 227
Score = 36.2 bits (82), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 50/112 (44%), Gaps = 1/112 (0%)
Query: 184 KVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEME-KE 242
+ +F+ V I L +++ P V + E D +YII+SG+V++ + +E
Sbjct: 10 RAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRE 69
Query: 243 IAVGTLQTGDMFGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQE 294
+ + DMFGE+ P+ + T T + + + AL + + E
Sbjct: 70 NLLTIMGPSDMFGELSIFDPGPRTSSATTITEVRAVSMDRDALRSWIADRPE 121
>pdb|3MZH|A Chain A, Crystal Structure Of Camp Receptor Protein From
Mycobacterium Tuberculosis In Complex With Camp And Its
Dna Binding Element
pdb|3MZH|B Chain B, Crystal Structure Of Camp Receptor Protein From
Mycobacterium Tuberculosis In Complex With Camp And Its
Dna Binding Element
Length = 225
Score = 36.2 bits (82), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 50/112 (44%), Gaps = 1/112 (0%)
Query: 184 KVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEME-KE 242
+ +F+ V I L +++ P V + E D +YII+SG+V++ + +E
Sbjct: 8 RAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRE 67
Query: 243 IAVGTLQTGDMFGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQE 294
+ + DMFGE+ P+ + T T + + + AL + + E
Sbjct: 68 NLLTIMGPSDMFGELSIFDPGPRTSSATTITEVRAVSMDRDALRSWIADRPE 119
>pdb|1I6X|A Chain A, Structure Of A Star Mutant Crp-Camp At 2.2 A
pdb|1I6X|B Chain B, Structure Of A Star Mutant Crp-Camp At 2.2 A
Length = 209
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 209 PPREDVIMQNEAPDDVYIIVSGEVE-MIDYEMEKEIAVGTLQTGDMFGEVG 258
P + +I Q E + +Y IV G V +I +E KE+ + L GD GE+G
Sbjct: 24 PSKSTLIHQGEKAETLYYIVKGSVAVLIKHEEGKEMILSYLNQGDFIGELG 74
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 6/68 (8%)
Query: 350 LLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYI------IFMYNLS 403
LLK + D+ +++ TPL +AA +G E VLL H +N + D++ I +
Sbjct: 144 LLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMH 203
Query: 404 YDIIILLD 411
+DI+ LLD
Sbjct: 204 HDIVRLLD 211
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 350 LLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLK 385
LL+A D +I D+ GRTPLH A S + +L++
Sbjct: 44 LLEASADANIQDNMGRTPLHAAVSADAQGVFQILIR 79
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 66/146 (45%), Gaps = 20/146 (13%)
Query: 361 DSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWE 420
D G T LH+AA + LL+ +++ +++D + G T L
Sbjct: 22 DRTGETALHLAARYSRSDAAKRLLEASADANIQDNM-----------------GRTPLHA 64
Query: 421 AISSKHHSIFRILYHCTAI---SDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRH 477
A+S+ +F+IL A + + L A + ++E+L+ +V++ D
Sbjct: 65 AVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDL 124
Query: 478 GRTAIEIAMAENNVEMVNFLVMNGSD 503
G++A+ A A NNV+ L+ NG++
Sbjct: 125 GKSALHWAAAVNNVDAAVVLLKNGAN 150
>pdb|3STZ|C Chain C, Kcsa Potassium Channel Mutant Y82c With Nitroxide Spin
Label
Length = 102
Score = 36.2 bits (82), Expect = 0.061, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 55 IRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAY 100
I Y A++WS+ T TTVGYGDL V + + M+ G+T++
Sbjct: 38 ITYPRALWWSVETATTVGYGDLCPVTLWGRLVAVVVMV--AGITSF 81
>pdb|3STL|C Chain C, Kcsa Potassium Channel Mutant Y82c With Cadmium Bound
Length = 103
Score = 36.2 bits (82), Expect = 0.061, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 55 IRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAY 100
I Y A++WS+ T TTVGYGDL V + + M+ G+T++
Sbjct: 39 ITYPRALWWSVETATTVGYGDLCPVTLWGRLVAVVVMV--AGITSF 82
>pdb|3I54|A Chain A, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I54|B Chain B, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I54|C Chain C, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I54|D Chain D, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I59|B Chain B, Crystal Structure Of Mtbcrp In Complex With N6-Camp
Length = 249
Score = 35.8 bits (81), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 50/112 (44%), Gaps = 1/112 (0%)
Query: 184 KVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEME-KE 242
+ +F+ V I L +++ P V + E D +YII+SG+V++ + +E
Sbjct: 32 RAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRE 91
Query: 243 IAVGTLQTGDMFGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQE 294
+ + DMFGE+ P+ + T T + + + AL + + E
Sbjct: 92 NLLTIMGPSDMFGELSIFDPGPRTSSATTITEVRAVSMDRDALRSWIADRPE 143
>pdb|3H3U|A Chain A, Crystal Structure Of Crp (Camp Receptor Protein) From
Mycoba Tuberculosis
pdb|3H3U|B Chain B, Crystal Structure Of Crp (Camp Receptor Protein) From
Mycoba Tuberculosis
Length = 224
Score = 35.8 bits (81), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 50/112 (44%), Gaps = 1/112 (0%)
Query: 184 KVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEME-KE 242
+ +F+ V I L +++ P V + E D +YII+SG+V++ + +E
Sbjct: 7 RAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRE 66
Query: 243 IAVGTLQTGDMFGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQE 294
+ + DMFGE+ P+ + T T + + + AL + + E
Sbjct: 67 NLLTIMGPSDMFGELSIFDPGPRTSSATTITEVRAVSMDRDALRSWIADRPE 118
>pdb|1S5H|C Chain C, Potassium Channel Kcsa-Fab Complex T75c Mutant In K+
Length = 124
Score = 35.8 bits (81), Expect = 0.076, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 55 IRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAY 100
I Y A++WS+ T T VGYGDL+ V + + M+ G+T++
Sbjct: 60 ITYPRALWWSVETATCVGYGDLYPVTLWGRLVAVVVMV--AGITSF 103
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 35.4 bits (80), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 71/161 (44%), Gaps = 24/161 (14%)
Query: 350 LLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHAS----NVHLRDYIIFMYNLSYD 405
L+ A P D G+T H+A C+ LL A+ ++ R+Y
Sbjct: 65 LVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNY---------- 114
Query: 406 IIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPY---TAGDLLCTAEKRNDMSVME 462
+G TAL A++++ ++L A D + L A + N +S+++
Sbjct: 115 -------DGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQ 167
Query: 463 ELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSD 503
L+++G NV+++ G +A+ A + +V LV +G+D
Sbjct: 168 LLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGAD 208
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 67/158 (42%), Gaps = 33/158 (20%)
Query: 360 GDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGN---T 416
D G TPLHIA +G+ V L+ NL LD+ N T
Sbjct: 5 ADEDGDTPLHIAVVQGNLPAVHRLV----------------NLFQQGGRELDIYNNLRQT 48
Query: 417 ALWEAISSKHHSIFRILYHCTAISDPY-------TAGDLLCTAEKRNDM---SVMEELVK 466
L A+ + S+ R+L TA + P TA L C E R+ ++++
Sbjct: 49 PLHLAVITTLPSVVRLLV--TAGASPMALDRHGQTAAHLAC--EHRSPTCLRALLDSAAP 104
Query: 467 YGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDV 504
L++++++ G TA+ +A+ E V L+ G+D+
Sbjct: 105 GTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADI 142
>pdb|3VOU|A Chain A, The Crystal Structure Of Nak-Navsulp Chimera Channel
pdb|3VOU|B Chain B, The Crystal Structure Of Nak-Navsulp Chimera Channel
Length = 148
Score = 35.4 bits (80), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%)
Query: 48 FTETSLWIRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGL 97
F T +R + A+Y+S+ T+TTVG G+ +F I Y+ +GL
Sbjct: 44 FYSTVEGLRPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGL 93
>pdb|2QVS|B Chain B, Crystal Structure Of Type Iia Holoenzyme Of Camp-Dependent
Protein Kinase
Length = 310
Score = 35.4 bits (80), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 8/99 (8%)
Query: 175 QHLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEM 234
+ +F +E V LFK + + +V + + E +I Q E D YII SGEV +
Sbjct: 155 RKMFESFIESVPLFKSLEMSERMKIVDVIGEKIYKDGERIIAQGEKADSFYIIESGEVSI 214
Query: 235 IDYEMEK--------EIAVGTLQTGDMFGEVGALCCRPQ 265
+ K E+ + G FGE+ + +P+
Sbjct: 215 LIRSKTKSNKNGGNQEVEIAHCHKGQYFGELALVTNKPR 253
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 41/84 (48%)
Query: 185 VYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIA 244
+ LFK++ +E + ++ M + + E VI Q + D+ Y+I G +++ + + +
Sbjct: 43 ILLFKNLDQEQLSQVLDAMFEKIVKTDEHVIDQGDDGDNFYVIERGTYDILVTKDNQTRS 102
Query: 245 VGTLQTGDMFGEVGALCCRPQIYT 268
VG FGE+ + P+ T
Sbjct: 103 VGQYDNRGSFGELALMYNTPRAAT 126
>pdb|2K1E|A Chain A, Nmr Studies Of A Channel Protein Without Membranes:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2K1E|B Chain B, Nmr Studies Of A Channel Protein Without Membranes:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2K1E|C Chain C, Nmr Studies Of A Channel Protein Without Membranes:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2K1E|D Chain D, Nmr Studies Of A Channel Protein Without Membranes:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2KB1|A Chain A, Nmr Studies Of A Channel Protein Without Membrane:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2KB1|B Chain B, Nmr Studies Of A Channel Protein Without Membrane:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2KB1|C Chain C, Nmr Studies Of A Channel Protein Without Membrane:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2KB1|D Chain D, Nmr Studies Of A Channel Protein Without Membrane:
Structure And Dynamics Of Water-Solubilized Kcsa
Length = 103
Score = 35.0 bits (79), Expect = 0.11, Method: Composition-based stats.
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 55 IRYISAMYWSITTMTTVGYGDLHAV 79
I Y A++WS+ T TTVGYGD + V
Sbjct: 39 ISYPDAIWWSVETATTVGYGDRYPV 63
>pdb|3I59|A Chain A, Crystal Structure Of Mtbcrp In Complex With N6-Camp
Length = 249
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 49/112 (43%), Gaps = 1/112 (0%)
Query: 184 KVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEME-KE 242
+ +F+ V I L +++ P V + E D +YII+SG+V++ + +E
Sbjct: 32 RAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRE 91
Query: 243 IAVGTLQTGDMFGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQE 294
+ DMFGE+ P+ + T T + + + AL + + E
Sbjct: 92 NLLTIXGPSDMFGELSIFDPGPRTSSATTITEVRAVSMDRDALRSWIADRPE 143
>pdb|3LDD|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In
100 Mm K+ And Further Soaked In 99 Mm Na+1 MM K+
Length = 82
Score = 35.0 bits (79), Expect = 0.14, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 42 GSVNPNFTETSLWIRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYL 101
G+ +F E W ++YW+ T+ TVGYGD + M F ++ +G A
Sbjct: 17 GTAGFHFIEGESWT---VSLYWTFVTIATVGYGDYSPRTPLGMYFTCTLIVLGIGTFAVA 73
Query: 102 IGNMTNLVV 110
+ + ++
Sbjct: 74 VERLLEFLI 82
>pdb|3R65|A Chain A, Mthk Channel Pore E92q Mutant
Length = 82
Score = 34.7 bits (78), Expect = 0.15, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 42 GSVNPNFTETSLWIRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYL 101
G+ +F E W ++YW+ T+ TVGYGD + M F ++ +G A
Sbjct: 17 GTAGFHFIEGESWT---VSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVA 73
Query: 102 IGNMTNLVV 110
+ + ++
Sbjct: 74 VQRLLEFLI 82
>pdb|4HYO|A Chain A, Crystal Structure Of Mthk Pore
pdb|4HYO|B Chain B, Crystal Structure Of Mthk Pore
pdb|4HYO|C Chain C, Crystal Structure Of Mthk Pore
pdb|4HYO|D Chain D, Crystal Structure Of Mthk Pore
pdb|4HYO|E Chain E, Crystal Structure Of Mthk Pore
pdb|4HYO|F Chain F, Crystal Structure Of Mthk Pore
pdb|4HYO|G Chain G, Crystal Structure Of Mthk Pore
pdb|4HYO|H Chain H, Crystal Structure Of Mthk Pore
pdb|4HZ3|D Chain D, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|C Chain C, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|A Chain A, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|B Chain B, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|E Chain E, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|F Chain F, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|G Chain G, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|H Chain H, Mthk Pore Crystallized In Presence Of Tbsb
Length = 91
Score = 34.7 bits (78), Expect = 0.16, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 42 GSVNPNFTETSLWIRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYL 101
G+ +F E W ++YW+ T+ TVGYGD + M F ++ +G A
Sbjct: 24 GTAGFHFIEGESWT---VSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVA 80
Query: 102 IGNMTNLVV 110
+ + ++
Sbjct: 81 VERLLEFLI 89
>pdb|3LDC|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In
100 Mm K+
pdb|3LDE|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In
100 Mm K+ And Further Soaked In 100 Mm Na+
Length = 82
Score = 34.7 bits (78), Expect = 0.16, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 42 GSVNPNFTETSLWIRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYL 101
G+ +F E W ++YW+ T+ TVGYGD + M F ++ +G A
Sbjct: 17 GTAGFHFIEGESWT---VSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVA 73
Query: 102 IGNMTNLVV 110
+ + ++
Sbjct: 74 VERLLEFLI 82
>pdb|4GX5|A Chain A, Gsuk Channel
pdb|4GX5|B Chain B, Gsuk Channel
pdb|4GX5|C Chain C, Gsuk Channel
pdb|4GX5|D Chain D, Gsuk Channel
Length = 565
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 8/61 (13%)
Query: 16 IILVHCAGCLYYLLADRYPHKGETWLGSVNPNFTETSLWIRYISAMYWSITTMTTVGYGD 75
++L++CA L LLA + W E + +++ +YW+IT MTT+G+GD
Sbjct: 19 VLLLYCAFLLVMLLAYASIFRYLMW-------HLEGRAY-SFMAGIYWTITVMTTLGFGD 70
Query: 76 L 76
+
Sbjct: 71 I 71
>pdb|4GX0|A Chain A, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX0|B Chain B, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX0|C Chain C, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX0|D Chain D, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX1|A Chain A, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX1|B Chain B, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX1|C Chain C, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX1|D Chain D, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX2|A Chain A, Gsuk Channel Bound To Nad
pdb|4GX2|B Chain B, Gsuk Channel Bound To Nad
pdb|4GX2|C Chain C, Gsuk Channel Bound To Nad
pdb|4GX2|D Chain D, Gsuk Channel Bound To Nad
Length = 565
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 8/61 (13%)
Query: 16 IILVHCAGCLYYLLADRYPHKGETWLGSVNPNFTETSLWIRYISAMYWSITTMTTVGYGD 75
++L++CA L LLA + W E + +++ +YW+IT MTT+G+GD
Sbjct: 19 VLLLYCAFLLVMLLAYASIFRYLMW-------HLEGRAY-SFMAGIYWTITVMTTLGFGD 70
Query: 76 L 76
+
Sbjct: 71 I 71
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 34.7 bits (78), Expect = 0.17, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 32/69 (46%)
Query: 326 DGDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLK 385
D + S L A + ++ LL+ D D G PLH A S GH E +L+K
Sbjct: 39 DIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVK 98
Query: 386 HASNVHLRD 394
H + V++ D
Sbjct: 99 HGAVVNVAD 107
Score = 29.3 bits (64), Expect = 6.2, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 29/57 (50%)
Query: 333 VNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASN 389
V L S G+ + L+K ++ D TPLH AA+KG E +LL+H ++
Sbjct: 79 VPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD 135
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 34.3 bits (77), Expect = 0.18, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 32/69 (46%)
Query: 326 DGDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLK 385
D + S L A + ++ LL+ D D G PLH A S GH E +L+K
Sbjct: 37 DIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVK 96
Query: 386 HASNVHLRD 394
H + V++ D
Sbjct: 97 HGAVVNVAD 105
Score = 29.3 bits (64), Expect = 6.6, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 29/57 (50%)
Query: 333 VNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASN 389
V L S G+ + L+K ++ D TPLH AA+KG E +LL+H ++
Sbjct: 77 VPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD 133
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 34.3 bits (77), Expect = 0.18, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 32/69 (46%)
Query: 326 DGDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLK 385
D + S L A + ++ LL+ D D G PLH A S GH E +L+K
Sbjct: 41 DIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVK 100
Query: 386 HASNVHLRD 394
H + V++ D
Sbjct: 101 HGAVVNVAD 109
Score = 29.3 bits (64), Expect = 6.6, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 29/57 (50%)
Query: 333 VNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASN 389
V L S G+ + L+K ++ D TPLH AA+KG E +LL+H ++
Sbjct: 81 VPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD 137
>pdb|3FWE|A Chain A, Crystal Structure Of The Apo D138l Cap Mutant
pdb|3FWE|B Chain B, Crystal Structure Of The Apo D138l Cap Mutant
Length = 210
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 209 PPREDVIMQNEAPDDVYIIVSGEVE-MIDYEMEKEIAVGTLQTGDMFGEVG 258
P + +I Q E + +Y IV G V +I E KE+ + L GD GE+G
Sbjct: 25 PSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELG 75
>pdb|3IWZ|A Chain A, The C-Di-Gmp Responsive Global Regulator Clp Links
Cell-Cell Signaling To Virulence Gene Expression In
Xanthomonas Campestris
pdb|3IWZ|B Chain B, The C-Di-Gmp Responsive Global Regulator Clp Links
Cell-Cell Signaling To Virulence Gene Expression In
Xanthomonas Campestris
pdb|3IWZ|C Chain C, The C-Di-Gmp Responsive Global Regulator Clp Links
Cell-Cell Signaling To Virulence Gene Expression In
Xanthomonas Campestris
pdb|3IWZ|D Chain D, The C-Di-Gmp Responsive Global Regulator Clp Links
Cell-Cell Signaling To Virulence Gene Expression In
Xanthomonas Campestris
Length = 230
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 209 PPREDVIMQNEAPDDVYIIVSGEVEMIDYE-MEKEIAVGTLQTGDMFGEVG 258
P R DV + +Y ++SG V +I E ++E+ +G +G+ GE+G
Sbjct: 40 PTRTDVFRPGDPAGTLYYVISGSVSIIAEEDDDRELVLGYFGSGEFVGEMG 90
>pdb|1O3Q|A Chain A, Protein-Dna Recognition And Dna Deformation Revealed In
Crystal Structures Of Cap-Dna Complexes
pdb|1O3R|A Chain A, Protein-Dna Recognition And Dna Deformation Revealed In
Crystal Structures Of Cap-Dna Complexes
pdb|1O3T|A Chain A, Protein-Dna Recognition And Dna Deformation Revealed In
Crystal Structures Of Cap-Dna Complexes
pdb|1O3T|B Chain B, Protein-Dna Recognition And Dna Deformation Revealed In
Crystal Structures Of Cap-Dna Complexes
Length = 200
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 209 PPREDVIMQNEAPDDVYIIVSGEVE-MIDYEMEKEIAVGTLQTGDMFGEVG 258
P + +I Q E + +Y IV G V +I E KE+ + L GD GE+G
Sbjct: 17 PSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELG 67
>pdb|1RUO|A Chain A, Catabolite Gene Activator Protein (Cap) MutantDNA COMPLEX
+ Adenosine-3',5'-Cyclic-Monophosphate
pdb|1RUO|B Chain B, Catabolite Gene Activator Protein (Cap) MutantDNA COMPLEX
+ Adenosine-3',5'-Cyclic-Monophosphate
Length = 209
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 209 PPREDVIMQNEAPDDVYIIVSGEVE-MIDYEMEKEIAVGTLQTGDMFGEVG 258
P + +I Q E + +Y IV G V +I E KE+ + L GD GE+G
Sbjct: 24 PSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELG 74
>pdb|1O3S|A Chain A, Protein-Dna Recognition And Dna Deformation Revealed In
Crystal Structures Of Cap-Dna Complexes
Length = 200
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 209 PPREDVIMQNEAPDDVYIIVSGEVE-MIDYEMEKEIAVGTLQTGDMFGEVG 258
P + +I Q E + +Y IV G V +I E KE+ + L GD GE+G
Sbjct: 17 PSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELG 67
>pdb|1HW5|A Chain A, The CapCRP VARIANT T127LS128A
pdb|1HW5|B Chain B, The CapCRP VARIANT T127LS128A
Length = 210
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 209 PPREDVIMQNEAPDDVYIIVSGEVE-MIDYEMEKEIAVGTLQTGDMFGEVG 258
P + +I Q E + +Y IV G V +I E KE+ + L GD GE+G
Sbjct: 25 PSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELG 75
>pdb|1CGP|A Chain A, Catabolite Gene Activator Protein (Cap)DNA COMPLEX +
Adenosine-3',5'-Cyclic-Monophosphate
pdb|1CGP|B Chain B, Catabolite Gene Activator Protein (Cap)DNA COMPLEX +
Adenosine-3',5'-Cyclic-Monophosphate
Length = 205
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 209 PPREDVIMQNEAPDDVYIIVSGEVE-MIDYEMEKEIAVGTLQTGDMFGEVG 258
P + +I Q E + +Y IV G V +I E KE+ + L GD GE+G
Sbjct: 24 PSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELG 74
>pdb|1RUN|A Chain A, Catabolite Gene Activator Protein (Cap)DNA COMPLEX +
Adenosine-3',5'-Cyclic-Monophosphate
pdb|1RUN|B Chain B, Catabolite Gene Activator Protein (Cap)DNA COMPLEX +
Adenosine-3',5'-Cyclic-Monophosphate
pdb|1J59|A Chain A, Catabolite Gene Activator Protein (Cap)DNA COMPLEX +
Adenosine-3',5'-Cyclic-Monophosphate
pdb|1J59|B Chain B, Catabolite Gene Activator Protein (Cap)DNA COMPLEX +
Adenosine-3',5'-Cyclic-Monophosphate
pdb|1LB2|A Chain A, Structure Of The E. Coli Alpha C-Terminal Domain Of Rna
Polymerase In Complex With Cap And Dna
pdb|1I5Z|A Chain A, Structure Of Crp-Camp At 1.9 A
pdb|1I5Z|B Chain B, Structure Of Crp-Camp At 1.9 A
pdb|1ZRC|A Chain A, 4 Crystal Structures Of Cap-Dna With All Base-Pair
Substitutions At Position 6, Cap-Icap38 Dna
pdb|1ZRC|B Chain B, 4 Crystal Structures Of Cap-Dna With All Base-Pair
Substitutions At Position 6, Cap-Icap38 Dna
pdb|1ZRD|A Chain A, 4 Crystal Structures Of Cap-dna With All Base-pair
Substitutions At Position 6, Cap-[6a;17t]icap38 Dna
pdb|1ZRD|B Chain B, 4 Crystal Structures Of Cap-dna With All Base-pair
Substitutions At Position 6, Cap-[6a;17t]icap38 Dna
pdb|1ZRE|A Chain A, 4 Crystal Structures Of Cap-Dna With All Base-Pair
Substitutions At Position 6, Cap-[6g;17c]icap38 Dna
pdb|1ZRE|B Chain B, 4 Crystal Structures Of Cap-Dna With All Base-Pair
Substitutions At Position 6, Cap-[6g;17c]icap38 Dna
pdb|1ZRF|A Chain A, 4 Crystal Structures Of Cap-Dna With All Base-Pair
Substitutions At Position 6, Cap-[6c;17g]icap38 Dna
pdb|1ZRF|B Chain B, 4 Crystal Structures Of Cap-Dna With All Base-Pair
Substitutions At Position 6, Cap-[6c;17g]icap38 Dna
pdb|2GZW|A Chain A, Crystal Structure Of The E.coli Crp-camp Complex
pdb|2GZW|B Chain B, Crystal Structure Of The E.coli Crp-camp Complex
pdb|2GZW|C Chain C, Crystal Structure Of The E.coli Crp-camp Complex
pdb|2GZW|D Chain D, Crystal Structure Of The E.coli Crp-camp Complex
pdb|2WC2|A Chain A, Nmr Structure Of Catabolite Activator Protein In The
Unliganded State
pdb|2WC2|B Chain B, Nmr Structure Of Catabolite Activator Protein In The
Unliganded State
pdb|3IYD|G Chain G, Three-Dimensional Em Structure Of An Intact
Activator-Dependent Transcription Initiation Complex
pdb|3IYD|H Chain H, Three-Dimensional Em Structure Of An Intact
Activator-Dependent Transcription Initiation Complex
pdb|3N4M|A Chain A, E. Coli Rna Polymerase Alpha Subunit C-Terminal Domain In
Complex With Cap And Dna
Length = 209
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 209 PPREDVIMQNEAPDDVYIIVSGEVE-MIDYEMEKEIAVGTLQTGDMFGEVG 258
P + +I Q E + +Y IV G V +I E KE+ + L GD GE+G
Sbjct: 24 PSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELG 74
>pdb|2CGP|A Chain A, Catabolite Gene Activator ProteinDNA COMPLEX,
ADENOSINE-3', 5'-Cyclic-Monophosphate
pdb|1G6N|A Chain A, 2.1 Angstrom Structure Of Cap-Camp
pdb|1G6N|B Chain B, 2.1 Angstrom Structure Of Cap-Camp
pdb|3HIF|A Chain A, The Crystal Structure Of Apo Wild Type Cap At 3.6 A
Resolution.
pdb|3HIF|B Chain B, The Crystal Structure Of Apo Wild Type Cap At 3.6 A
Resolution.
pdb|3HIF|C Chain C, The Crystal Structure Of Apo Wild Type Cap At 3.6 A
Resolution.
pdb|3HIF|D Chain D, The Crystal Structure Of Apo Wild Type Cap At 3.6 A
Resolution.
pdb|3HIF|E Chain E, The Crystal Structure Of Apo Wild Type Cap At 3.6 A
Resolution.
pdb|3HIF|F Chain F, The Crystal Structure Of Apo Wild Type Cap At 3.6 A
Resolution.
pdb|3RYP|A Chain A, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3RYP|B Chain B, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3RYR|A Chain A, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3RYR|B Chain B, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
Length = 210
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 209 PPREDVIMQNEAPDDVYIIVSGEVE-MIDYEMEKEIAVGTLQTGDMFGEVG 258
P + +I Q E + +Y IV G V +I E KE+ + L GD GE+G
Sbjct: 25 PSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELG 75
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 457 DMSVMEELVKYGLNVDSKDRH--GRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEF 512
D++ + +K +N D + G+TA+ IA+ N +V LV NG+DV A +F
Sbjct: 78 DVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNXTLVTLLVENGADVQAAANGDF 135
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 6/58 (10%)
Query: 361 DSKGRTPLHIAASKGHEECVLVLLKHASNVHLRD------YIIFMYNLSYDIIILLDM 412
DS GR PLH A GH + LK +++ RD I M + DI+ LL +
Sbjct: 265 DSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRL 322
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 6/58 (10%)
Query: 361 DSKGRTPLHIAASKGHEECVLVLLKHASNVHLRD------YIIFMYNLSYDIIILLDM 412
DS GR PLH A GH + LK +++ RD I M + DI+ LL +
Sbjct: 265 DSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRL 322
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 6/58 (10%)
Query: 361 DSKGRTPLHIAASKGHEECVLVLLKHASNVHLRD------YIIFMYNLSYDIIILLDM 412
DS GR PLH A GH + LK +++ RD I M + DI+ LL +
Sbjct: 265 DSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRL 322
>pdb|3R6S|A Chain A, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|B Chain B, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|C Chain C, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|D Chain D, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|E Chain E, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|F Chain F, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
Length = 247
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 182 VEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEME- 240
+ + +F+ V + L+ M+ P + + E D +YII SG+V++ + +
Sbjct: 28 LSRAGIFQGVDPTAVNNLIQDMETVRFPRGATIFDEGEPGDRLYIITSGKVKLARHAPDG 87
Query: 241 KEIAVGTLQTGDMFGEVGALCCRPQIYT 268
+E + + DMFGE+ P+ +
Sbjct: 88 RENLLTIMGPSDMFGELSIFDPGPRTSS 115
>pdb|3KCC|A Chain A, Crystal Structure Of D138l Mutant Of Catabolite Gene
Activator Protein
pdb|3KCC|B Chain B, Crystal Structure Of D138l Mutant Of Catabolite Gene
Activator Protein
Length = 260
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 209 PPREDVIMQNEAPDDVYIIVSGEVE-MIDYEMEKEIAVGTLQTGDMFGEVG 258
P + +I Q E + +Y IV G V +I E KE+ + L GD GE+G
Sbjct: 75 PSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELG 125
>pdb|4B6A|TT Chain t, Cryo-Em Structure Of The 60s Ribosomal Subunit In Complex
With Arx1 And Rei1
Length = 614
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 10/72 (13%)
Query: 221 PDDVYIIVSGEVEMIDYEMEK-----EIAVGTLQTGDMFG----EVGALCCRPQIYTYRT 271
P D +++ SGEV +ID +M + + TL+T D + + G L RP Y R
Sbjct: 326 PSDDFVVQSGEVYLIDLKMASLEHCTKKGLVTLETVDSYTGKSHKAGELIARPGAYV-RD 384
Query: 272 KTLSQLLRLKTS 283
+ +L+LKTS
Sbjct: 385 FAQTHILKLKTS 396
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 33.1 bits (74), Expect = 0.41, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 337 TVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRD 394
T A + L +LL+ R D D D GRT L A G ++CV +L + +++ RD
Sbjct: 50 TAARKADEQALSQLLEDR-DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRD 106
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 33/56 (58%)
Query: 449 LCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDV 504
L A K N + + E+L+ G NV++KD G+T + ++ EM FL+ +G++V
Sbjct: 72 LIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANV 127
Score = 32.3 bits (72), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 32/70 (45%)
Query: 325 EDGDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLL 384
ED D S L+ ++LL + + D G+TPL + G+ E LL
Sbjct: 62 EDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLL 121
Query: 385 KHASNVHLRD 394
+H +NV+ R+
Sbjct: 122 EHGANVNDRN 131
>pdb|3QOP|A Chain A, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3QOP|B Chain B, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3RDI|A Chain A, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3RDI|B Chain B, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3ROU|A Chain A, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3ROU|B Chain B, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3RPQ|A Chain A, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3RPQ|B Chain B, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
Length = 210
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 209 PPREDVIMQNEAPDDVYIIVSGEVE-MIDYEMEKEIAVGTLQTGDMFGEVG 258
P + +I Q E + +Y IV G V +I E KE+ + L GD GE+G
Sbjct: 25 PSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILFYLNQGDFIGELG 75
>pdb|2R9R|B Chain B, Shaker Family Voltage Dependent Potassium Channel
(Kv1.2-Kv2.1 Paddle Chimera Channel) In Association With
Beta Subunit
pdb|2R9R|H Chain H, Shaker Family Voltage Dependent Potassium Channel
(Kv1.2-Kv2.1 Paddle Chimera Channel) In Association With
Beta Subunit
Length = 514
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 10/17 (58%), Positives = 15/17 (88%)
Query: 60 AMYWSITTMTTVGYGDL 76
A +W++ +MTTVGYGD+
Sbjct: 379 AFWWAVVSMTTVGYGDM 395
>pdb|3LUT|B Chain B, A Structural Model For The Full-Length Shaker Potassium
Channel Kv1.2
Length = 499
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 10/17 (58%), Positives = 15/17 (88%)
Query: 60 AMYWSITTMTTVGYGDL 76
A +W++ +MTTVGYGD+
Sbjct: 364 AFWWAVVSMTTVGYGDM 380
>pdb|2A79|B Chain B, Mammalian Shaker Kv1.2 Potassium Channel- Beta Subunit
Complex
Length = 499
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 10/17 (58%), Positives = 15/17 (88%)
Query: 60 AMYWSITTMTTVGYGDL 76
A +W++ +MTTVGYGD+
Sbjct: 364 AFWWAVVSMTTVGYGDM 380
>pdb|3LNM|B Chain B, F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Channel
pdb|3LNM|D Chain D, F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Channel
Length = 514
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 10/17 (58%), Positives = 15/17 (88%)
Query: 60 AMYWSITTMTTVGYGDL 76
A +W++ +MTTVGYGD+
Sbjct: 379 AFWWAVVSMTTVGYGDM 395
>pdb|3OUS|A Chain A, Mthk Channel Pore T59a Mutant
Length = 82
Score = 32.7 bits (73), Expect = 0.63, Method: Composition-based stats.
Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Query: 42 GSVNPNFTETSLWIRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYL 101
G+ +F E W ++YW+ T+ VGYGD + M F ++ +G A
Sbjct: 17 GTAGFHFIEGESWT---VSLYWTFVTIAAVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVA 73
Query: 102 IGNMTNLVV 110
+ + ++
Sbjct: 74 VERLLEFLI 82
>pdb|3K0D|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Etpp,
K+ Complex
pdb|3K0D|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Etpp,
K+ Complex
pdb|3K0G|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Etpp,
Na+ Complex
pdb|3K0G|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Etpp,
Na+ Complex
Length = 96
Score = 32.3 bits (72), Expect = 0.68, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 9/71 (12%)
Query: 48 FTETSLWIRYISAMYWSITTMTTVG-----YGDLHAVNTVEMIFI----IFYMLFNLGLT 98
F T +R I A+Y+S+ T+TTVG D + T+ IFI +F + L +
Sbjct: 24 FYSTVEGLRPIDALYFSVVTLTTVGETPPPQTDFGKIFTILYIFIGIGLVFGFIHKLAVN 83
Query: 99 AYLIGNMTNLV 109
L ++NLV
Sbjct: 84 VQLPSILSNLV 94
>pdb|3K06|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Ntpp,
K+ Complex
pdb|3K06|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Ntpp,
K+ Complex
pdb|3K08|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Ntpp,
Na+ Complex
pdb|3K08|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Ntpp,
Na+ Complex
Length = 96
Score = 32.3 bits (72), Expect = 0.68, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 9/71 (12%)
Query: 48 FTETSLWIRYISAMYWSITTMTTVG-----YGDLHAVNTVEMIFI----IFYMLFNLGLT 98
F T +R I A+Y+S+ T+TTVG D + T+ IFI +F + L +
Sbjct: 24 FYSTVEGLRPIDALYFSVVTLTTVGNTPPPQTDFGKIFTILYIFIGIGLVFGFIHKLAVN 83
Query: 99 AYLIGNMTNLV 109
L ++NLV
Sbjct: 84 VQLPSILSNLV 94
>pdb|3K03|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Dtpp,
K+ Complex
pdb|3K03|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Dtpp,
K+ Complex
pdb|3K04|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Dtpp,
Na+ Complex
pdb|3K04|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Dtpp,
Na+ Complex
Length = 96
Score = 32.3 bits (72), Expect = 0.68, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 9/71 (12%)
Query: 48 FTETSLWIRYISAMYWSITTMTTVG-----YGDLHAVNTVEMIFI----IFYMLFNLGLT 98
F T +R I A+Y+S+ T+TTVG D + T+ IFI +F + L +
Sbjct: 24 FYSTVEGLRPIDALYFSVVTLTTVGDTPPPQTDFGKIFTILYIFIGIGLVFGFIHKLAVN 83
Query: 99 AYLIGNMTNLV 109
L ++NLV
Sbjct: 84 VQLPSILSNLV 94
>pdb|2WLL|A Chain A, Potassium Channel From Burkholderia Pseudomallei
Length = 333
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 8/38 (21%)
Query: 57 YISAMYWSITTMTTVGYGDL-------HAVNTVEMIFI 87
++ A ++S+ T+ TVGYGD+ HA+ T+E IF+
Sbjct: 97 FVGAFFFSVETLATVGYGDMHPQTVYAHAIATLE-IFV 133
>pdb|1P7B|A Chain A, Crystal Structure Of An Inward Rectifier Potassium Channel
pdb|1P7B|B Chain B, Crystal Structure Of An Inward Rectifier Potassium Channel
pdb|2WLL|B Chain B, Potassium Channel From Burkholderia Pseudomallei
Length = 333
Score = 32.3 bits (72), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 8/38 (21%)
Query: 57 YISAMYWSITTMTTVGYGDL-------HAVNTVEMIFI 87
++ A ++S+ T+ TVGYGD+ HA+ T+E IF+
Sbjct: 97 FVGAFFFSVETLATVGYGDMHPQTVYAHAIATLE-IFV 133
>pdb|2IH1|C Chain C, Ion Selectivity In A Semi-Synthetic K+ Channel Locked In
The Conductive Conformation
pdb|2IH3|C Chain C, Ion Selectivity In A Semi-Synthetic K+ Channel Locked In
The Conductive Conformation
Length = 122
Score = 32.3 bits (72), Expect = 0.77, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 55 IRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAY 100
I Y A++W+ T TTV YGDL+ V + + M+ G+T++
Sbjct: 60 ITYPRALWWACETATTVXYGDLYPVTLWGRLVAVVVMV--AGITSF 103
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 54/135 (40%), Gaps = 26/135 (19%)
Query: 335 LLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRD 394
L+ A+ G A ++ LL+ DP + + L +A SKG+ + V +LL +V+ D
Sbjct: 56 LMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYD 115
Query: 395 YIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP-------YTAGD 447
+ NG T L A+ H ++L A DP Y + D
Sbjct: 116 W-----------------NGGTPLLYAVHGNHVKCVKMLLESGA--DPTIETDSGYNSMD 156
Query: 448 LLCTAEKRNDMSVME 462
L R+ V+E
Sbjct: 157 LAVALGYRSVQQVIE 171
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 6/133 (4%)
Query: 405 DIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAG----DLLCTAEKRNDMSV 460
++I D G T L A + ++ L A DP G L A + +
Sbjct: 43 NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGA--DPQLLGKGRESALSLACSKGYTDI 100
Query: 461 MEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDM 520
++ L+ G++V+ D +G T + A+ N+V+ V L+ +G+D ++S +L
Sbjct: 101 VKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVA 160
Query: 521 LQKREIGHRITVH 533
L R + I H
Sbjct: 161 LGYRSVQQVIESH 173
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 39/100 (39%), Gaps = 16/100 (16%)
Query: 335 LLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRD 394
L+ S G + LL D ++ D G T L A GH+E +LL S
Sbjct: 187 LMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSC----- 241
Query: 395 YIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILY 434
I L D +G+TAL A+ + I +LY
Sbjct: 242 -----------DISLTDRDGSTALMVALDAGQSEIASMLY 270
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 56/108 (51%), Gaps = 10/108 (9%)
Query: 406 IIILLDMNGNTALWEAISSKHHSIFRILYHCTA--ISDPYTAG------DLLCTAEKRND 457
++ + D NGNTAL ++S + + + L + AG L T + ++D
Sbjct: 103 VVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDD 162
Query: 458 MSVMEELVKYGLNVDSK-DRHGRTAIEIAMAENNVEMVNFLVMNGSDV 504
+ + +L + G N+++K + G+TA+ +A++ V++V L+ +DV
Sbjct: 163 IETVLQLFRLG-NINAKASQAGQTALMLAVSHGRVDVVKALLACEADV 209
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 337 TVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRD 394
T A + L +LL+ R D D D GRT L A G ++CV +L + +++ RD
Sbjct: 51 TAARKADEQALSQLLEDR-DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRD 107
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 32.0 bits (71), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 54/135 (40%), Gaps = 26/135 (19%)
Query: 335 LLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRD 394
L+ A+ G A ++ LL+ DP + + L +A SKG+ + V +LL +V+ D
Sbjct: 40 LMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYD 99
Query: 395 YIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP-------YTAGD 447
+ NG T L A+ H ++L A DP Y + D
Sbjct: 100 W-----------------NGGTPLLYAVHGNHVKCVKMLLESGA--DPTIETDSGYNSMD 140
Query: 448 LLCTAEKRNDMSVME 462
L R+ V+E
Sbjct: 141 LAVALGYRSVQQVIE 155
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 6/133 (4%)
Query: 405 DIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAG----DLLCTAEKRNDMSV 460
++I D G T L A + ++ L A DP G L A + +
Sbjct: 27 NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGA--DPQLLGKGRESALSLACSKGYTDI 84
Query: 461 MEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDM 520
++ L+ G++V+ D +G T + A+ N+V+ V L+ +G+D ++S +L
Sbjct: 85 VKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVA 144
Query: 521 LQKREIGHRITVH 533
L R + I H
Sbjct: 145 LGYRSVQQVIESH 157
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 54/135 (40%), Gaps = 26/135 (19%)
Query: 335 LLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRD 394
L+ A+ G A ++ LL+ DP + + L +A SKG+ + V +LL +V+ D
Sbjct: 38 LMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYD 97
Query: 395 YIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP-------YTAGD 447
+ NG T L A+ H ++L A DP Y + D
Sbjct: 98 W-----------------NGGTPLLYAVHGNHVKCVKMLLESGA--DPTIETDSGYNSMD 138
Query: 448 LLCTAEKRNDMSVME 462
L R+ V+E
Sbjct: 139 LAVALGYRSVQQVIE 153
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 6/133 (4%)
Query: 405 DIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAG----DLLCTAEKRNDMSV 460
++I D G T L A + ++ L A DP G L A + +
Sbjct: 25 NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGA--DPQLLGKGRESALSLACSKGYTDI 82
Query: 461 MEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDM 520
++ L+ G++V+ D +G T + A+ N+V+ V L+ +G+D ++S +L
Sbjct: 83 VKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVA 142
Query: 521 LQKREIGHRITVH 533
L R + I H
Sbjct: 143 LGYRSVQQVIESH 155
>pdb|3SHR|A Chain A, Crystal Structure Of Cgmp-Dependent Protein Kinase Reveals
Novel Site Of Interchain Communication
pdb|3SHR|B Chain B, Crystal Structure Of Cgmp-Dependent Protein Kinase Reveals
Novel Site Of Interchain Communication
Length = 299
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 178 FLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMI-- 235
++ ++ V F+ + +EI+ L ++ + E +I Q D +II G+V +
Sbjct: 155 YMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTRE 214
Query: 236 DYEMEKEIAVGTLQTGDMFGE 256
D E + + TL GD FGE
Sbjct: 215 DSPNEDPVFLRTLGKGDWFGE 235
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 28/48 (58%)
Query: 457 DMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDV 504
+ S+++ L+ G NV+S D HG T + A + N+ + LV +G+ +
Sbjct: 66 NYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAI 113
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 343 NAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNV 390
N + +D L+ A + + DS G TPLH AAS + L++H + +
Sbjct: 66 NYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAI 113
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Query: 314 NIGDLIAESGEEDGDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAAS 373
N G+L ++G+ S L T NA L LL+ + +I + G TPL IA
Sbjct: 194 NSGNLDKQTGKG------STALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKR 247
Query: 374 KGHEEC 379
HE C
Sbjct: 248 LKHEHC 253
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 20/26 (76%)
Query: 366 TPLHIAASKGHEECVLVLLKHASNVH 391
TPLH+AAS GH + V LL++ ++++
Sbjct: 74 TPLHLAASHGHRDIVQKLLQYKADIN 99
>pdb|2F37|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
pdb|2F37|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
Length = 251
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 363 KGRTPLHIAASKGHEECVLVLLKHASNVHLR 393
+G + LHIA K +CV +L+++ +NVH R
Sbjct: 94 RGHSALHIAIEKRSLQCVKLLVENGANVHAR 124
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 20/26 (76%)
Query: 366 TPLHIAASKGHEECVLVLLKHASNVH 391
TPLH+AAS GH + V LL++ ++++
Sbjct: 69 TPLHLAASHGHRDIVQKLLQYKADIN 94
>pdb|2ETA|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETA|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETB|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 256
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 363 KGRTPLHIAASKGHEECVLVLLKHASNVHLR 393
+G + LHIA K +CV +L+++ ++VHLR
Sbjct: 89 QGHSALHIAIEKRSLQCVKLLVENGADVHLR 119
>pdb|2OZ6|A Chain A, Crystal Structure Of Virulence Factor Regulator From
Pseudomonas Aeruginosa In Complex With Camp
Length = 207
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 199 LVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVE-MIDYEMEKEIAVGTLQTGDMFGEV 257
L+A + +I + + ++ I+ G V +I+ + +E+ +G L +GD FGE+
Sbjct: 9 LLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGEL 68
Query: 258 G 258
G
Sbjct: 69 G 69
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 449 LCTAEKRNDMSVMEELVKY-GLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVV 505
L A K ND+ + +L+K+ G V + G TA+ IA +N+E L+ ++V
Sbjct: 7 LLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELV 64
>pdb|2ETC|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
pdb|2ETC|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 274
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 363 KGRTPLHIAASKGHEECVLVLLKHASNVHLR 393
+G + LHIA K +CV +L+++ ++VHLR
Sbjct: 102 QGHSALHIAIEKRSLQCVKLLVENGADVHLR 132
>pdb|3FHI|B Chain B, Crystal Structure Of A Complex Between The Catalytic And
Regulatory (Ri{alpha}) Subunits Of Pka
pdb|3IIA|A Chain A, Crystal Structure Of Apo (91-244) Ria Subunit Of
Camp-Dependent Protein Kinase
pdb|3PLQ|A Chain A, Crystal Structure Of Pka Type I Regulatory Subunit Bound
With Rp-8-Br- Camps
pdb|3PNA|A Chain A, Crystal Structure Of Camp Bound (91-244)ria Subunit Of
Camp-Dependent Protein Kinase
pdb|3PNA|B Chain B, Crystal Structure Of Camp Bound (91-244)ria Subunit Of
Camp-Dependent Protein Kinase
Length = 154
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 212 EDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFGEVGALCCRPQIYTYRT 271
E VI Q + D+ Y+I GE +D + E A ++ G FGE+ + P+ T +
Sbjct: 70 ETVIQQGDEGDNFYVIDQGE---MDVYVNNEWAT-SVGEGGSFGELALIYGTPRAATVKA 125
Query: 272 KTLSQL 277
KT +L
Sbjct: 126 KTNVKL 131
>pdb|3PVB|B Chain B, Crystal Structure Of (73-244)ria:c Holoenzyme Of
Camp-Dependent Protein Kinase
Length = 160
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 212 EDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFGEVGALCCRPQIYTYRT 271
E VI Q + D+ Y+I GE +D + E A ++ G FGE+ + P+ T +
Sbjct: 77 ETVIQQGDEGDNFYVIDQGE---MDVYVNNEWAT-SVGEGGSFGELALIYGTPRAATVKA 132
Query: 272 KTLSQL 277
KT +L
Sbjct: 133 KTNVKL 138
>pdb|2QKS|A Chain A, Crystal Structure Of A Kir3.1-Prokaryotic Kir Channel
Chimera
pdb|2QKS|B Chain B, Crystal Structure Of A Kir3.1-Prokaryotic Kir Channel
Chimera
Length = 321
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 10/18 (55%), Positives = 15/18 (83%)
Query: 60 AMYWSITTMTTVGYGDLH 77
A ++S+ T+ TVGYGD+H
Sbjct: 82 AFFFSVETLATVGYGDMH 99
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 336 LTVASTGNAAFLDELLKAR-LDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNV 390
L++ASTG + LL R +D +I D G TPL A H +CV LL +++
Sbjct: 73 LSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADL 128
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 57/149 (38%), Gaps = 18/149 (12%)
Query: 361 DSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWE 420
D GR PLH + S E LL NV+L DY D +G T
Sbjct: 33 DQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYP--------------DDSGWTPFHI 78
Query: 421 AISSKHHSIFRILYHCTAISD--PYTAGDLLC--TAEKRNDMSVMEELVKYGLNVDSKDR 476
A S + + + LY D T + C A + V + L++ G +V KD+
Sbjct: 79 ACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDK 138
Query: 477 HGRTAIEIAMAENNVEMVNFLVMNGSDVV 505
+ + A + +++++ L G V
Sbjct: 139 FNQIPLHRAASVGSLKLIELLCGLGKSAV 167
>pdb|4EV0|A Chain A, Crystal Structure Of Thermus Thermophilus Catabolite
Activator Protein
pdb|4EV0|D Chain D, Crystal Structure Of Thermus Thermophilus Catabolite
Activator Protein
Length = 216
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 187 LFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEM-EKEIAV 245
LF ++ E + L ++ + P + + Q + +Y++ SG+V + + +E +
Sbjct: 6 LFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQERTL 65
Query: 246 GTLQTGDMFGEVGAL 260
L G++FGE+ L
Sbjct: 66 ALLGPGELFGEMSLL 80
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 336 LTVASTGNAAFLDELLKAR-LDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNV 390
L++ASTG + LL R +D +I D G TPL A H +CV LL +++
Sbjct: 73 LSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGADL 128
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 57/149 (38%), Gaps = 18/149 (12%)
Query: 361 DSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWE 420
D GR PLH + S E LL NV+L DY D +G T
Sbjct: 33 DQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYP--------------DDSGWTPFHI 78
Query: 421 AISSKHHSIFRILYHCTAISD--PYTAGDLLC--TAEKRNDMSVMEELVKYGLNVDSKDR 476
A S + + + LY D T + C A + V + L++ G +V KD+
Sbjct: 79 ACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDK 138
Query: 477 HGRTAIEIAMAENNVEMVNFLVMNGSDVV 505
+ + A + +++++ L G V
Sbjct: 139 FNQIPLHRAASVGSLKLIELLCGLGKSAV 167
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 57/149 (38%), Gaps = 18/149 (12%)
Query: 361 DSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWE 420
D GR PLH + S E LL NV+L DY D +G T
Sbjct: 33 DQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYP--------------DDSGWTPFHI 78
Query: 421 AISSKHHSIFRILYHCTAISD--PYTAGDLLC--TAEKRNDMSVMEELVKYGLNVDSKDR 476
A S + + + LY D T + C A + V + L++ G +V KD+
Sbjct: 79 ACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDK 138
Query: 477 HGRTAIEIAMAENNVEMVNFLVMNGSDVV 505
+ + A + +++++ L G V
Sbjct: 139 FNQIPLHRAASVGSLKLIELLCGLGKSAV 167
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 29.3 bits (64), Expect = 7.2, Method: Composition-based stats.
Identities = 15/58 (25%), Positives = 30/58 (51%)
Query: 452 AEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANK 509
A K D+ +++ V G +V+ GR + A +E++ FL++ G+D+ +K
Sbjct: 14 ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDK 71
Score = 28.9 bits (63), Expect = 9.5, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 27/46 (58%)
Query: 458 MSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSD 503
+ ++E L+ G ++++ D+H T + A+ E +V V L+ G+D
Sbjct: 53 LEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGAD 98
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 28.9 bits (63), Expect = 8.3, Method: Composition-based stats.
Identities = 15/58 (25%), Positives = 30/58 (51%)
Query: 452 AEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANK 509
A K D+ +++ V G +V+ GR + A +E++ FL++ G+D+ +K
Sbjct: 9 ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDK 66
>pdb|4D8V|A Chain A, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis At Ph 4.2
pdb|4D8V|B Chain B, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis At Ph 4.2
pdb|4D8X|A Chain A, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Space Group
P6322 At Ph 4.6
pdb|4D8Y|A Chain A, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Space Group
P212121 At Ph 5.6
pdb|4D8Y|B Chain B, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Space Group
P212121 At Ph 5.6
pdb|4D8Y|C Chain C, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Space Group
P212121 At Ph 5.6
pdb|4D8Y|D Chain D, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Space Group
P212121 At Ph 5.6
pdb|4D8Y|E Chain E, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Space Group
P212121 At Ph 5.6
pdb|4D8Y|F Chain F, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Space Group
P212121 At Ph 5.6
pdb|4D98|A Chain A, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Space Group H32
At Ph 7.5
pdb|4D98|B Chain B, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Space Group H32
At Ph 7.5
pdb|4D9H|A Chain A, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Complex With
Adenosine
pdb|4D9H|B Chain B, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Complex With
Adenosine
pdb|4DA0|A Chain A, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Complex With
2'-Deoxyguanosine
pdb|4DA6|A Chain A, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Complex With
Ganciclovir
pdb|4DA7|A Chain A, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Complex With
Aciclovir
pdb|4DA8|A Chain A, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Complex With
8-Bromoguanosine
pdb|4DAB|A Chain A, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Complex With
Hypoxanthine
pdb|4DAE|A Chain A, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Complex With
6-Chloroguanosine
pdb|4DAN|A Chain A, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Complex With
2-Fluoroadenosine
pdb|4DAN|B Chain B, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Complex With
2-Fluoroadenosine
pdb|4DAO|A Chain A, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Complex With
Adenine
pdb|4DAO|B Chain B, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Complex With
Adenine
pdb|4DAR|A Chain A, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Complex With
Tubercidin
Length = 253
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 9/59 (15%)
Query: 442 PYTAGDLLCTAEKRNDMSVMEELVKYG-LNVDSKD--------RHGRTAIEIAMAENNV 491
P T G + + ND S +E+L KYG L V+ + +HGR A+ I ++V
Sbjct: 167 PVTVGSVFTADQFYNDDSQIEKLAKYGVLGVEMETTALYTLAAKHGRKALSILTVSDHV 225
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 79/205 (38%), Gaps = 41/205 (20%)
Query: 253 MFGEVGALCC---RPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHKK 309
++G+V AL R R KT RL+ M + ++ +V +LK L +
Sbjct: 114 VYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGA 173
Query: 310 LKDLNIGDLIAESGEEDGDPNMSVN-----LLTVASTGNAAFLDELLKARLDPDIGDSKG 364
D+N D NM N LL+ + A LL D ++ +G
Sbjct: 174 --DVNACD------------NMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERG 219
Query: 365 RTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISS 424
+TPL +A K H V LL+ ++ + D D +G TAL A+
Sbjct: 220 KTPLILAVEKKHLGLVQRLLEQ-EHIEINDT---------------DSDGKTALLLAVEL 263
Query: 425 KHHSIFRILYHCTAISDPYTAGDLL 449
K I +L A +D GDL+
Sbjct: 264 KLKKIAELLCKRGASTD---CGDLV 285
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 66/170 (38%), Gaps = 36/170 (21%)
Query: 358 DIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTA 417
D+ + G+T LH+AA G V L + V ++ + G+TA
Sbjct: 39 DLQNDLGQTALHLAAILGEASTVEKLYAAGAGV-----------------LVAERGGHTA 81
Query: 418 LWEAISSKHHSIFRILY-----HCTAISDPYTAGDLLCTAEKRNDMSVMEELVK------ 466
L A + H+ +L H SD Y CT + + + ++
Sbjct: 82 LHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEE 141
Query: 467 -----YGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCE 511
+ L +++++ G T + +A+ + EMV L G+D+ NK E
Sbjct: 142 PRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADL---NKPE 188
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 66/170 (38%), Gaps = 36/170 (21%)
Query: 358 DIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTA 417
D+ + G+T LH+AA G V L + V ++ + G+TA
Sbjct: 39 DLQNDLGQTALHLAAILGEASTVEKLYAAGAGV-----------------LVAERGGHTA 81
Query: 418 LWEAISSKHHSIFRILY-----HCTAISDPYTAGDLLCTAEKRNDMSVMEELVK------ 466
L A + H+ +L H SD Y CT + + + ++
Sbjct: 82 LHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEE 141
Query: 467 -----YGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCE 511
+ L +++++ G T + +A+ + EMV L G+D+ NK E
Sbjct: 142 PRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADL---NKPE 188
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,295,564
Number of Sequences: 62578
Number of extensions: 698284
Number of successful extensions: 2426
Number of sequences better than 100.0: 216
Number of HSP's better than 100.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 1809
Number of HSP's gapped (non-prelim): 526
length of query: 602
length of database: 14,973,337
effective HSP length: 104
effective length of query: 498
effective length of database: 8,465,225
effective search space: 4215682050
effective search space used: 4215682050
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)