Query 038432
Match_columns 602
No_of_seqs 698 out of 5184
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 19:05:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038432.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038432hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yyh_A HN1;, notch 1, ankyrin 100.0 5.8E-38 2E-42 303.5 19.7 209 310-535 33-247 (253)
2 4b93_B Ankyrin repeat domain-c 100.0 1.1E-38 3.9E-43 310.3 14.4 203 304-523 15-230 (269)
3 2f8y_A Notch homolog 1, transl 100.0 2.8E-37 9.4E-42 292.8 21.7 207 312-535 3-215 (223)
4 3aji_A 26S proteasome non-ATPa 100.0 1.3E-37 4.5E-42 296.7 18.3 192 326-534 35-228 (231)
5 2xai_A ASB-9, ankyrin repeat a 100.0 2.3E-37 7.9E-42 300.7 17.9 210 303-533 6-219 (261)
6 2xai_A ASB-9, ankyrin repeat a 100.0 7.3E-37 2.5E-41 297.2 19.8 190 330-537 2-192 (261)
7 1oy3_D Transcription factor in 100.0 3.8E-37 1.3E-41 302.8 17.5 194 326-536 4-250 (282)
8 1k1a_A B-cell lymphoma 3-encod 100.0 7.4E-37 2.5E-41 293.4 19.1 213 305-534 14-239 (241)
9 3d9h_A CDNA FLJ77766, highly s 100.0 8.1E-37 2.8E-41 300.7 18.9 196 321-534 49-245 (285)
10 1yyh_A HN1;, notch 1, ankyrin 100.0 8.7E-38 3E-42 302.3 11.3 221 325-579 4-241 (253)
11 2rfa_A Transient receptor pote 100.0 1.3E-36 4.5E-41 290.0 19.3 188 330-534 2-220 (232)
12 4gpm_A Engineered protein OR26 100.0 3.1E-36 1.1E-40 270.6 18.7 157 333-506 6-164 (169)
13 3b7b_A Euchromatic histone-lys 100.0 2.3E-36 8E-41 289.2 17.9 201 307-524 18-223 (237)
14 1oy3_D Transcription factor in 100.0 1.7E-36 5.9E-41 298.2 17.3 220 304-523 13-270 (282)
15 3b7b_A Euchromatic histone-lys 100.0 5.3E-36 1.8E-40 286.8 20.1 216 325-574 5-223 (237)
16 1k1a_A B-cell lymphoma 3-encod 100.0 7.5E-36 2.6E-40 286.4 20.3 215 326-574 4-229 (241)
17 1wdy_A 2-5A-dependent ribonucl 100.0 1.7E-35 5.7E-40 291.4 23.0 234 303-536 8-278 (285)
18 3utm_A Tankyrase-1; tankyrase, 100.0 1.2E-35 4.1E-40 301.7 22.2 219 301-536 25-305 (351)
19 3kea_A K1L; tropism, ANK repea 100.0 8.9E-37 3.1E-41 300.3 13.3 207 312-538 12-222 (285)
20 3d9h_A CDNA FLJ77766, highly s 100.0 3.9E-36 1.3E-40 295.8 17.7 207 306-533 65-275 (285)
21 3hra_A Ankyrin repeat family p 100.0 1.9E-35 6.6E-40 275.2 20.3 188 329-533 3-200 (201)
22 2fo1_E LIN-12 protein; beta-ba 100.0 1.3E-35 4.4E-40 303.8 19.1 217 302-535 127-370 (373)
23 2dzn_A Probable 26S proteasome 100.0 1.2E-35 4.1E-40 282.5 16.9 200 305-521 7-218 (228)
24 1ikn_D Protein (I-kappa-B-alph 100.0 9.6E-37 3.3E-41 291.7 9.0 191 327-534 4-207 (236)
25 3ljn_A Hypothetical protein; a 100.0 1.9E-35 6.4E-40 302.1 18.8 231 302-534 22-267 (364)
26 2etb_A Transient receptor pote 100.0 5.9E-36 2E-40 290.0 12.5 198 331-534 2-244 (256)
27 2dzn_A Probable 26S proteasome 100.0 3.3E-35 1.1E-39 279.4 16.8 190 331-534 2-198 (228)
28 4b93_B Ankyrin repeat domain-c 100.0 1E-35 3.5E-40 289.4 12.6 191 327-534 7-208 (269)
29 1n11_A Ankyrin; clathrin, BAND 100.0 1.1E-34 3.7E-39 304.1 20.8 231 304-534 18-301 (437)
30 1n11_A Ankyrin; clathrin, BAND 100.0 1.7E-34 5.9E-39 302.6 20.5 211 306-533 185-399 (437)
31 1s70_B 130 kDa myosin-binding 100.0 1E-34 3.5E-39 288.2 17.5 176 328-520 37-274 (299)
32 3aji_A 26S proteasome non-ATPa 100.0 2.4E-34 8.2E-39 274.1 19.0 190 329-535 4-196 (231)
33 4g8k_A 2-5A-dependent ribonucl 100.0 2.2E-34 7.6E-39 290.9 19.5 230 302-538 27-300 (337)
34 2fo1_E LIN-12 protein; beta-ba 100.0 2.7E-35 9.3E-40 301.4 12.9 237 304-575 98-360 (373)
35 3eu9_A Huntingtin-interacting 100.0 2.1E-34 7.3E-39 275.9 17.4 214 304-534 13-233 (240)
36 4gpm_A Engineered protein OR26 100.0 3.8E-34 1.3E-38 257.0 16.3 154 366-536 6-161 (169)
37 3kea_A K1L; tropism, ANK repea 100.0 4.1E-35 1.4E-39 288.4 10.5 209 302-534 33-244 (285)
38 2pnn_A Transient receptor pote 100.0 7.5E-35 2.6E-39 285.1 11.3 205 325-535 7-257 (273)
39 3utm_A Tankyrase-1; tankyrase, 100.0 1.8E-33 6.2E-38 285.6 21.7 217 303-519 61-321 (351)
40 3ljn_A Hypothetical protein; a 100.0 1.1E-34 3.9E-39 296.3 11.9 192 326-536 15-236 (364)
41 4g8k_A 2-5A-dependent ribonucl 100.0 8.6E-34 2.9E-38 286.6 16.3 206 328-533 22-261 (337)
42 3jxi_A Vanilloid receptor-rela 100.0 2.4E-34 8.1E-39 279.4 11.5 200 329-534 3-248 (260)
43 1ikn_D Protein (I-kappa-B-alph 100.0 9.3E-34 3.2E-38 271.0 14.7 208 303-521 11-229 (236)
44 1wdy_A 2-5A-dependent ribonucl 100.0 3.6E-33 1.2E-37 274.7 17.5 229 330-574 4-266 (285)
45 3v30_A DNA-binding protein rfx 100.0 4.7E-33 1.6E-37 252.2 15.2 167 331-514 2-171 (172)
46 3eu9_A Huntingtin-interacting 100.0 2E-32 6.8E-37 262.1 18.6 192 327-534 5-200 (240)
47 4hbd_A KN motif and ankyrin re 100.0 1.9E-33 6.4E-38 275.1 11.6 186 332-534 77-273 (276)
48 1sw6_A Regulatory protein SWI6 100.0 5.2E-33 1.8E-37 279.0 12.6 183 314-521 111-326 (327)
49 1ihb_A P18-INK4C(INK6), cyclin 100.0 3.7E-32 1.3E-36 243.6 16.3 156 330-503 4-162 (162)
50 3v31_A Ankyrin repeat family A 100.0 5.4E-32 1.9E-36 243.9 16.4 159 330-505 2-162 (167)
51 2y1l_E Darpin-8.4; hydrolase-i 100.0 1.2E-31 4.1E-36 242.1 18.1 158 327-501 10-169 (169)
52 2rfm_A Putative ankyrin repeat 100.0 4.8E-32 1.6E-36 250.3 15.6 158 358-532 29-188 (192)
53 2rfm_A Putative ankyrin repeat 100.0 3.7E-32 1.3E-36 251.0 14.1 161 324-501 28-190 (192)
54 2rfa_A Transient receptor pote 100.0 4.4E-32 1.5E-36 258.6 15.0 202 304-509 7-228 (232)
55 2f8y_A Notch homolog 1, transl 100.0 2.5E-31 8.7E-36 251.6 19.7 185 304-505 29-218 (223)
56 3hra_A Ankyrin repeat family p 100.0 2.8E-31 9.7E-36 247.0 18.6 178 307-501 12-201 (201)
57 2vge_A RELA-associated inhibit 100.0 3.7E-34 1.3E-38 271.5 -1.2 185 327-531 17-208 (229)
58 2pnn_A Transient receptor pote 100.0 4.1E-32 1.4E-36 265.6 13.2 213 301-516 14-272 (273)
59 3f6q_A Integrin-linked protein 100.0 1.4E-31 4.9E-36 244.0 15.7 166 329-511 3-171 (179)
60 2ptm_A Hyperpolarization-activ 100.0 6.4E-30 2.2E-34 237.0 22.8 194 111-307 2-195 (198)
61 3v31_A Ankyrin repeat family A 100.0 6.1E-31 2.1E-35 237.0 15.3 155 363-534 2-158 (167)
62 2y1l_E Darpin-8.4; hydrolase-i 100.0 9.7E-31 3.3E-35 236.1 15.6 156 361-533 11-168 (169)
63 1awc_B Protein (GA binding pro 100.0 1.8E-30 6.1E-35 230.2 17.0 148 332-497 3-152 (153)
64 2etb_A Transient receptor pote 100.0 2.1E-31 7.3E-36 257.9 11.0 185 304-505 6-248 (256)
65 3twr_A Tankyrase-2; ankyrin re 100.0 7.2E-31 2.5E-35 236.0 13.6 157 328-502 5-164 (165)
66 1awc_B Protein (GA binding pro 100.0 2E-30 6.9E-35 229.9 15.1 149 364-530 2-152 (153)
67 1ihb_A P18-INK4C(INK6), cyclin 100.0 1.4E-30 4.8E-35 233.3 12.7 156 362-535 3-161 (162)
68 3bpz_A Potassium/sodium hyperp 100.0 2.7E-29 9.1E-34 233.5 21.3 196 110-309 2-197 (202)
69 3ukn_A Novel protein similar t 100.0 1E-29 3.5E-34 238.3 18.1 196 107-307 2-200 (212)
70 3jxi_A Vanilloid receptor-rela 100.0 9.5E-31 3.3E-35 254.0 11.0 200 304-506 9-253 (260)
71 1bd8_A P19INK4D CDK4/6 inhibit 100.0 1.1E-29 3.9E-34 225.9 16.7 151 331-500 2-155 (156)
72 1ycs_B 53BP2, P53BP2; ankyrin 100.0 2.4E-31 8.2E-36 254.5 5.9 177 329-523 3-193 (239)
73 3v30_A DNA-binding protein rfx 100.0 5.5E-30 1.9E-34 231.9 14.0 154 364-534 2-158 (172)
74 1s70_B 130 kDa myosin-binding 100.0 7.9E-30 2.7E-34 252.9 16.4 181 337-534 4-255 (299)
75 4hbd_A KN motif and ankyrin re 100.0 1.1E-29 3.8E-34 248.3 16.6 161 324-501 104-273 (276)
76 3f6q_A Integrin-linked protein 100.0 1.2E-29 4.3E-34 231.2 15.5 158 362-536 3-163 (179)
77 3twr_A Tankyrase-2; ankyrin re 100.0 6E-30 2E-34 230.0 12.6 157 360-534 4-163 (165)
78 1sw6_A Regulatory protein SWI6 100.0 2.1E-30 7.3E-35 259.9 7.7 178 332-534 98-306 (327)
79 1bd8_A P19INK4D CDK4/6 inhibit 100.0 4.2E-29 1.4E-33 222.2 13.3 151 364-533 2-155 (156)
80 2vge_A RELA-associated inhibit 100.0 6.9E-30 2.3E-34 242.1 6.6 197 347-578 1-205 (229)
81 1d9s_A Cyclin-dependent kinase 100.0 7.2E-29 2.5E-33 215.0 12.2 132 354-503 2-136 (136)
82 3beh_A MLL3241 protein; transm 100.0 2E-29 7E-34 255.2 10.0 214 15-307 136-349 (355)
83 1bi7_B P16INK4A, MTS1, multipl 100.0 5E-29 1.7E-33 221.6 10.3 143 358-518 6-151 (156)
84 3t8k_A Uncharacterized protein 100.0 3E-29 1E-33 229.0 8.7 160 331-509 6-185 (186)
85 1ycs_B 53BP2, P53BP2; ankyrin 99.9 1.1E-28 3.9E-33 235.9 8.6 156 361-534 2-162 (239)
86 1bi7_B P16INK4A, MTS1, multipl 99.9 8.8E-28 3E-32 213.5 9.4 142 326-485 7-151 (156)
87 3t8k_A Uncharacterized protein 99.9 7.2E-28 2.5E-32 219.9 8.0 153 364-534 6-177 (186)
88 1n0r_A 4ANK, 4 ankyrin repeats 99.9 4.3E-26 1.5E-30 194.5 14.5 124 363-503 1-126 (126)
89 1d9s_A Cyclin-dependent kinase 99.9 1.1E-26 3.7E-31 201.3 10.7 122 412-534 10-134 (136)
90 2jab_A H10-2-G3; HER2, darpin, 99.9 3.8E-26 1.3E-30 197.8 13.3 121 364-501 14-136 (136)
91 2aja_A Ankyrin repeat family p 99.9 4.5E-28 1.5E-32 245.3 -1.2 153 330-504 91-251 (376)
92 3c5r_A BARD-1, BRCA1-associate 99.9 2E-26 6.9E-31 199.9 8.4 133 354-535 1-133 (137)
93 3c5r_A BARD-1, BRCA1-associate 99.9 7.2E-26 2.5E-30 196.4 11.9 102 437-538 1-103 (137)
94 3deo_A Signal recognition part 99.9 9.4E-27 3.2E-31 212.8 3.9 138 361-533 41-181 (183)
95 2jab_A H10-2-G3; HER2, darpin, 99.9 3.9E-25 1.3E-29 191.5 12.6 125 327-468 10-136 (136)
96 1n0r_A 4ANK, 4 ankyrin repeats 99.9 6.8E-25 2.3E-29 187.0 13.9 124 330-470 1-126 (126)
97 2aja_A Ankyrin repeat family p 99.9 2.5E-27 8.7E-32 239.8 -2.7 206 302-534 94-342 (376)
98 3ui2_A Signal recognition part 99.9 2.6E-26 9E-31 219.9 3.7 166 330-533 14-182 (244)
99 3deo_A Signal recognition part 99.9 6E-25 2E-29 200.8 10.2 139 328-500 41-181 (183)
100 3ui2_A Signal recognition part 99.9 6.5E-25 2.2E-29 210.3 10.1 142 329-504 43-186 (244)
101 2b0o_E UPLC1; arfgap, structur 99.9 1.6E-24 5.5E-29 213.7 12.1 140 362-524 149-299 (301)
102 3aaa_C Myotrophin, protein V-1 99.9 2.3E-24 7.8E-29 183.0 11.4 116 411-526 4-121 (123)
103 3ehr_A Osteoclast-stimulating 99.9 5E-25 1.7E-29 208.1 8.0 133 363-512 72-207 (222)
104 2b0o_E UPLC1; arfgap, structur 99.9 3E-24 1E-28 211.7 11.4 139 330-491 150-299 (301)
105 3aaa_C Myotrophin, protein V-1 99.9 4E-24 1.4E-28 181.6 10.0 115 362-493 5-121 (123)
106 3ehr_A Osteoclast-stimulating 99.9 2.8E-23 9.7E-28 196.0 11.1 125 411-535 70-197 (222)
107 3lvq_E ARF-GAP with SH3 domain 99.9 1.5E-22 5.2E-27 214.5 14.9 135 363-514 131-276 (497)
108 3jue_A Arfgap with coiled-coil 99.9 2E-22 6.9E-27 203.1 12.7 146 328-521 196-347 (368)
109 1dcq_A PYK2-associated protein 99.9 1.5E-21 5.2E-26 190.1 18.2 129 365-504 131-264 (278)
110 3jue_A Arfgap with coiled-coil 99.9 2.8E-22 9.5E-27 202.0 13.0 122 413-534 198-324 (368)
111 3lvq_E ARF-GAP with SH3 domain 99.9 6.9E-22 2.4E-26 209.4 15.6 134 331-487 132-276 (497)
112 1n0q_A 3ANK, 3 ankyrin repeats 99.9 1.2E-21 4E-26 157.1 11.7 91 413-503 1-93 (93)
113 1dcq_A PYK2-associated protein 99.9 1.1E-21 3.8E-26 191.1 13.9 190 345-534 42-261 (278)
114 1n0q_A 3ANK, 3 ankyrin repeats 99.9 9.5E-22 3.2E-26 157.7 10.4 93 330-439 1-93 (93)
115 2l6b_A NR1C; ankyrin, consensu 99.9 4.6E-22 1.6E-26 166.5 8.6 106 410-515 5-112 (115)
116 2l6b_A NR1C; ankyrin, consensu 99.8 2.3E-21 8E-26 162.2 7.4 105 360-481 5-111 (115)
117 4f8a_A Potassium voltage-gated 99.8 1.3E-18 4.4E-23 154.8 15.5 142 158-303 5-148 (160)
118 2zgd_A 3 repeat synthetic anky 99.7 2.5E-18 8.6E-23 142.3 9.3 88 443-530 22-109 (110)
119 2zgd_A 3 repeat synthetic anky 99.7 3.5E-18 1.2E-22 141.4 9.3 90 327-433 20-109 (110)
120 3mdp_A Cyclic nucleotide-bindi 99.7 1.8E-16 6E-21 137.8 15.2 130 179-308 5-138 (142)
121 3ocp_A PRKG1 protein; serine/t 99.7 8.3E-17 2.9E-21 139.3 12.2 130 164-297 7-136 (139)
122 3idb_B CAMP-dependent protein 99.7 9.2E-17 3.1E-21 142.9 11.7 125 173-297 31-155 (161)
123 3gyd_A CNMP-BD protein, cyclic 99.7 3.2E-16 1.1E-20 143.0 15.5 146 158-303 13-163 (187)
124 2pqq_A Putative transcriptiona 99.7 6.4E-16 2.2E-20 135.4 15.9 132 179-310 4-136 (149)
125 2z69_A DNR protein; beta barre 99.7 1.3E-15 4.4E-20 134.3 14.8 131 179-309 11-143 (154)
126 1vp6_A CNBD, cyclic-nucleotide 99.6 2.1E-15 7.1E-20 130.2 13.8 125 178-308 9-133 (138)
127 4ev0_A Transcription regulator 99.6 5.2E-15 1.8E-19 138.4 16.5 128 182-309 1-129 (216)
128 3dn7_A Cyclic nucleotide bindi 99.6 6.2E-15 2.1E-19 135.4 15.8 130 178-307 5-136 (194)
129 3fx3_A Cyclic nucleotide-bindi 99.6 8E-15 2.8E-19 139.3 15.9 133 177-309 8-141 (237)
130 3e97_A Transcriptional regulat 99.6 6.8E-15 2.3E-19 139.2 15.0 131 179-309 5-136 (231)
131 3pna_A CAMP-dependent protein 99.6 6.4E-15 2.2E-19 129.8 13.6 117 176-296 34-150 (154)
132 3shr_A CGMP-dependent protein 99.6 4.8E-15 1.6E-19 146.2 14.1 144 160-307 19-162 (299)
133 3d0s_A Transcriptional regulat 99.6 6.1E-15 2.1E-19 139.2 13.4 131 179-309 5-136 (227)
134 4h33_A LMO2059 protein; bilaye 99.6 2.2E-15 7.7E-20 127.9 8.7 93 56-148 43-135 (137)
135 1zyb_A Transcription regulator 99.6 2.5E-14 8.6E-19 135.3 16.5 132 178-309 16-151 (232)
136 3dv8_A Transcriptional regulat 99.6 2.5E-14 8.7E-19 134.1 16.3 129 180-308 3-134 (220)
137 1wgp_A Probable cyclic nucleot 99.6 2.8E-15 9.6E-20 129.2 8.5 116 180-295 6-132 (137)
138 4ava_A Lysine acetyltransferas 99.6 2.3E-14 7.8E-19 143.6 15.8 130 178-308 11-140 (333)
139 3vou_A ION transport 2 domain 99.6 2.2E-14 7.7E-19 124.1 12.3 106 15-142 33-148 (148)
140 3shr_A CGMP-dependent protein 99.6 1.5E-14 5.3E-19 142.5 12.5 137 176-312 153-291 (299)
141 2gau_A Transcriptional regulat 99.6 4.4E-14 1.5E-18 133.7 15.0 127 183-309 13-140 (232)
142 2d93_A RAP guanine nucleotide 99.6 2.3E-15 7.9E-20 129.2 5.4 124 167-294 3-128 (134)
143 3dkw_A DNR protein; CRP-FNR, H 99.6 1.4E-14 4.9E-19 136.6 11.2 130 179-308 8-139 (227)
144 3iwz_A CAP-like, catabolite ac 99.5 9.7E-14 3.3E-18 131.1 16.5 131 179-309 10-147 (230)
145 3tnp_B CAMP-dependent protein 99.5 2.3E-14 7.9E-19 147.3 12.1 124 173-296 138-261 (416)
146 2qcs_B CAMP-dependent protein 99.5 1.9E-13 6.6E-18 134.1 16.3 129 176-308 35-163 (291)
147 3of1_A CAMP-dependent protein 99.5 6.9E-14 2.3E-18 133.6 12.5 126 178-307 5-130 (246)
148 2qcs_B CAMP-dependent protein 99.5 3.2E-13 1.1E-17 132.5 16.4 128 176-303 153-282 (291)
149 3ryp_A Catabolite gene activat 99.5 3.2E-13 1.1E-17 125.6 15.5 124 186-309 2-127 (210)
150 3of1_A CAMP-dependent protein 99.5 1.7E-13 5.7E-18 130.9 13.7 117 177-296 122-238 (246)
151 2a9h_A Voltage-gated potassium 99.5 5.2E-14 1.8E-18 121.5 9.0 63 54-116 82-144 (155)
152 2fmy_A COOA, carbon monoxide o 99.5 1.1E-13 3.8E-18 129.7 11.7 124 179-309 3-126 (220)
153 2oz6_A Virulence factor regula 99.5 7.9E-13 2.7E-17 122.6 16.3 119 191-309 1-124 (207)
154 4din_B CAMP-dependent protein 99.5 2E-13 6.9E-18 138.8 13.2 131 176-310 126-256 (381)
155 2ih3_C Voltage-gated potassium 99.5 2.8E-13 9.6E-18 112.5 10.9 60 55-114 60-119 (122)
156 3eff_K Voltage-gated potassium 99.5 1.8E-13 6.3E-18 117.1 10.0 58 56-113 40-97 (139)
157 3tnp_B CAMP-dependent protein 99.5 1.9E-13 6.5E-18 140.5 11.8 128 176-303 263-397 (416)
158 4din_B CAMP-dependent protein 99.4 3.4E-13 1.2E-17 137.1 12.7 129 175-303 243-373 (381)
159 3kcc_A Catabolite gene activat 99.4 1.3E-12 4.6E-17 125.6 15.4 121 189-309 55-177 (260)
160 1ft9_A Carbon monoxide oxidati 99.4 2.4E-13 8.1E-18 127.7 9.7 122 181-309 1-122 (222)
161 1o5l_A Transcriptional regulat 99.4 9.1E-13 3.1E-17 122.8 12.3 125 185-309 4-130 (213)
162 1o7f_A CAMP-dependent RAP1 gua 99.4 9.5E-13 3.3E-17 138.4 13.3 134 165-299 27-163 (469)
163 1orq_C Potassium channel; volt 99.4 7.5E-13 2.6E-17 124.0 10.6 81 15-111 140-220 (223)
164 3e6c_C CPRK, cyclic nucleotide 99.4 1.9E-12 6.7E-17 123.8 12.5 127 180-309 9-136 (250)
165 1o7f_A CAMP-dependent RAP1 gua 99.4 2.4E-12 8.2E-17 135.4 13.3 123 175-300 332-456 (469)
166 2q67_A Potassium channel prote 99.3 4.5E-12 1.5E-16 103.6 10.5 58 56-113 49-106 (114)
167 4f7z_A RAP guanine nucleotide 99.3 4.5E-12 1.6E-16 145.3 14.2 127 169-296 31-160 (999)
168 2k1e_A Water soluble analogue 99.3 5.3E-13 1.8E-17 107.4 2.3 84 15-114 15-98 (103)
169 2bgc_A PRFA; bacterial infecti 99.3 3.9E-11 1.3E-15 113.8 15.6 119 190-309 3-127 (238)
170 3la7_A Global nitrogen regulat 99.3 4E-11 1.4E-15 114.0 15.4 116 193-308 30-151 (243)
171 3cf6_E RAP guanine nucleotide 99.3 1.1E-11 3.7E-16 134.6 12.9 127 166-295 18-146 (694)
172 3ouf_A Potassium channel prote 99.3 3.8E-11 1.3E-15 95.0 11.4 56 56-111 32-87 (97)
173 3ldc_A Calcium-gated potassium 99.2 4.6E-11 1.6E-15 91.3 10.5 54 56-109 28-81 (82)
174 4f7z_A RAP guanine nucleotide 99.2 8.2E-11 2.8E-15 134.9 16.7 114 176-292 333-448 (999)
175 2r9r_B Paddle chimera voltage 99.2 1.5E-11 5.1E-16 128.6 7.3 84 15-114 350-433 (514)
176 3b02_A Transcriptional regulat 99.1 3.5E-10 1.2E-14 103.5 12.0 95 206-307 2-97 (195)
177 3pjs_K KCSA, voltage-gated pot 99.1 5.3E-12 1.8E-16 111.3 -2.5 61 55-115 66-126 (166)
178 1xl4_A Inward rectifier potass 99.0 8.3E-10 2.8E-14 106.4 9.7 57 55-111 81-137 (301)
179 2zcw_A TTHA1359, transcription 99.0 1.2E-09 4.2E-14 100.5 10.0 100 199-306 1-103 (202)
180 2qks_A KIR3.1-prokaryotic KIR 99.0 1.9E-09 6.3E-14 104.7 9.9 58 56-113 78-135 (321)
181 3um7_A Potassium channel subfa 98.9 3.4E-09 1.2E-13 101.4 9.9 57 56-112 115-171 (309)
182 1p7b_A Integral membrane chann 98.9 1.2E-09 4.2E-14 106.3 5.9 58 56-113 96-153 (333)
183 4gx0_A TRKA domain protein; me 98.8 1.4E-08 4.9E-13 108.8 10.7 80 15-111 27-107 (565)
184 3um7_A Potassium channel subfa 98.7 3.1E-08 1.1E-12 94.8 8.0 58 56-113 224-287 (309)
185 3sya_A G protein-activated inw 98.7 1.3E-07 4.3E-12 91.7 11.7 93 15-114 51-151 (340)
186 3ukm_A Potassium channel subfa 98.6 5.5E-08 1.9E-12 91.6 7.8 56 56-111 93-148 (280)
187 3ukm_A Potassium channel subfa 98.6 4.6E-08 1.6E-12 92.1 6.3 58 56-113 201-265 (280)
188 3spc_A Inward-rectifier K+ cha 98.5 3.7E-07 1.3E-11 88.6 10.7 92 15-113 53-153 (343)
189 1lnq_A MTHK channels, potassiu 98.3 3.5E-08 1.2E-12 98.3 -1.9 57 56-112 45-101 (336)
190 3rvy_A ION transport protein; 98.1 3.4E-06 1.2E-10 81.6 6.4 61 53-113 177-243 (285)
191 4dxw_A Navrh, ION transport pr 93.5 0.24 8.3E-06 45.4 8.7 58 53-110 162-224 (229)
192 3kg2_A Glutamate receptor 2; I 85.1 0.8 2.7E-05 50.9 5.5 98 10-111 515-617 (823)
193 4g26_A Pentatricopeptide repea 64.3 15 0.00051 37.8 7.9 147 335-505 33-209 (501)
194 3fjs_A Uncharacterized protein 52.9 51 0.0017 25.6 7.5 65 204-278 39-103 (114)
195 3lwc_A Uncharacterized protein 52.2 27 0.00091 27.7 5.7 45 206-256 45-89 (119)
196 2ozj_A Cupin 2, conserved barr 48.4 26 0.00089 27.2 5.2 44 207-255 44-87 (114)
197 3rns_A Cupin 2 conserved barre 46.2 69 0.0024 28.6 8.3 68 203-280 39-106 (227)
198 1yfu_A 3-hydroxyanthranilate-3 43.1 41 0.0014 28.6 5.6 36 220-256 54-89 (174)
199 1yhf_A Hypothetical protein SP 41.1 46 0.0016 25.6 5.6 66 204-279 43-108 (115)
200 2pfw_A Cupin 2, conserved barr 41.0 1.1E+02 0.0037 23.4 7.8 67 204-280 37-103 (116)
201 1zvf_A 3-hydroxyanthranilate 3 39.3 40 0.0014 28.7 4.9 37 219-255 52-91 (176)
202 1o5u_A Novel thermotoga mariti 38.4 56 0.0019 24.9 5.4 45 205-255 35-79 (101)
203 1dgw_A Canavalin; duplicated s 38.4 33 0.0011 29.4 4.6 53 203-256 43-95 (178)
204 2gu9_A Tetracenomycin polyketi 37.7 47 0.0016 25.3 5.1 46 205-255 25-73 (113)
205 1v70_A Probable antibiotics sy 36.5 58 0.002 24.2 5.4 46 205-255 32-78 (105)
206 4e2g_A Cupin 2 conserved barre 35.6 51 0.0018 25.9 5.1 47 204-255 44-90 (126)
207 1fi2_A Oxalate oxidase, germin 35.2 79 0.0027 27.6 6.6 53 203-255 74-130 (201)
208 3es1_A Cupin 2, conserved barr 33.0 59 0.002 27.8 5.1 45 206-254 84-128 (172)
209 3ibm_A Cupin 2, conserved barr 30.7 69 0.0024 27.0 5.3 46 205-255 60-105 (167)
210 3h8u_A Uncharacterized conserv 30.2 59 0.002 25.5 4.6 48 203-254 41-89 (125)
211 3d0j_A Uncharacterized protein 29.6 68 0.0023 26.1 4.6 62 216-282 45-109 (140)
212 2xp1_A SPT6; transcription, IW 29.1 79 0.0027 27.1 5.3 42 181-228 10-51 (178)
213 2fqp_A Hypothetical protein BP 28.8 42 0.0014 25.1 3.3 49 205-256 22-71 (97)
214 3es4_A Uncharacterized protein 28.0 45 0.0015 26.3 3.3 45 208-257 49-93 (116)
215 4g26_A Pentatricopeptide repea 27.8 82 0.0028 32.2 6.2 107 345-472 91-209 (501)
216 2vqa_A SLL1358 protein, MNCA; 27.0 93 0.0032 30.0 6.2 51 205-255 56-107 (361)
217 1j58_A YVRK protein; cupin, de 25.6 90 0.0031 30.5 5.9 52 204-255 82-133 (385)
218 4b29_A Dimethylsulfoniopropion 25.6 94 0.0032 27.6 5.2 45 207-255 138-182 (217)
219 2pyt_A Ethanolamine utilizatio 24.6 75 0.0026 25.6 4.2 45 206-257 62-106 (133)
220 1x82_A Glucose-6-phosphate iso 24.6 1.1E+02 0.0036 26.5 5.5 33 222-254 97-129 (190)
221 3bcw_A Uncharacterized protein 24.1 60 0.002 25.9 3.4 45 208-257 56-100 (123)
222 2qnk_A 3-hydroxyanthranilate 3 24.1 88 0.003 28.9 4.8 38 218-256 48-85 (286)
223 3rns_A Cupin 2 conserved barre 24.0 92 0.0031 27.8 5.1 66 203-278 155-221 (227)
224 3l2h_A Putative sugar phosphat 23.7 68 0.0023 26.7 4.0 45 205-254 50-96 (162)
225 4axo_A EUTQ, ethanolamine util 23.5 81 0.0028 26.2 4.2 31 220-255 83-113 (151)
226 3arc_L Photosystem II reaction 23.5 37 0.0013 20.0 1.4 12 59-70 15-26 (37)
227 2vpv_A Protein MIF2, MIF2P; nu 23.5 63 0.0021 27.4 3.6 32 220-256 109-140 (166)
228 1y9q_A Transcriptional regulat 23.5 1.2E+02 0.004 26.0 5.6 45 206-255 109-155 (192)
229 2cav_A Protein (canavalin); vi 23.4 69 0.0024 32.2 4.5 53 202-255 87-139 (445)
230 1j58_A YVRK protein; cupin, de 23.2 1.3E+02 0.0045 29.3 6.5 52 205-256 261-313 (385)
231 3i7d_A Sugar phosphate isomera 23.1 75 0.0026 26.6 4.1 46 205-255 47-94 (163)
232 2vqa_A SLL1358 protein, MNCA; 23.0 1.4E+02 0.0047 28.8 6.6 53 203-255 236-289 (361)
233 3jzv_A Uncharacterized protein 23.0 62 0.0021 27.4 3.5 45 206-255 58-102 (166)
234 3kgz_A Cupin 2 conserved barre 23.0 66 0.0023 26.8 3.6 43 207-254 50-92 (156)
235 3d82_A Cupin 2, conserved barr 22.9 1.7E+02 0.0058 21.4 5.9 51 221-281 50-100 (102)
236 2f4p_A Hypothetical protein TM 22.7 1.2E+02 0.0039 24.8 5.1 47 205-255 52-98 (147)
237 1o4t_A Putative oxalate decarb 22.4 82 0.0028 25.2 4.0 45 205-254 61-106 (133)
238 1vj2_A Novel manganese-contain 22.3 75 0.0026 25.1 3.8 45 206-255 53-97 (126)
239 1v54_M VIIIB, IX, cytochrome C 22.3 1.5E+02 0.0053 18.8 4.2 31 77-107 8-39 (46)
240 3pjz_A Potassium uptake protei 22.3 3E+02 0.01 27.9 8.9 90 52-148 302-404 (494)
241 4i4a_A Similar to unknown prot 22.1 1E+02 0.0034 24.2 4.6 45 206-255 39-83 (128)
242 1gp8_A Protein (scaffolding pr 21.6 65 0.0022 19.5 2.2 17 482-498 17-33 (40)
243 2b8m_A Hypothetical protein MJ 21.4 74 0.0025 24.6 3.5 45 207-255 33-77 (117)
244 2bnm_A Epoxidase; oxidoreducta 21.2 94 0.0032 26.8 4.5 49 206-255 122-173 (198)
245 2opk_A Hypothetical protein; p 21.0 70 0.0024 24.7 3.2 36 219-257 51-86 (112)
246 1sfn_A Conserved hypothetical 20.7 1.2E+02 0.004 27.5 5.1 49 202-255 166-215 (246)
247 2i45_A Hypothetical protein; n 20.5 1.3E+02 0.0046 22.5 4.8 66 209-283 36-101 (107)
No 1
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=5.8e-38 Score=303.50 Aligned_cols=209 Identities=19% Similarity=0.188 Sum_probs=183.6
Q ss_pred hhcccccccccccCCCC---CCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhc
Q 038432 310 LKDLNIGDLIAESGEED---GDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKH 386 (602)
Q Consensus 310 ~~~~~~~~~l~~~~~~~---~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~ 386 (602)
.+..+..+.|++.+.+. .+..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++
T Consensus 33 ~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 112 (253)
T 1yyh_A 33 EDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRN 112 (253)
T ss_dssp -------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHS
T ss_pred CCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 34667777777777654 578899999999999999999999999999999999999999999999999999999999
Q ss_pred cc-CCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHH
Q 038432 387 AS-NVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEE 463 (602)
Q Consensus 387 g~-~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~ 463 (602)
|+ +++..+ ..|.||||+|+..|+.+++++|+++|++++. ..|.||||+|+..|+.+++++
T Consensus 113 ~~~~~~~~~-----------------~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~ 175 (253)
T 1yyh_A 113 RATDLDARM-----------------HDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVV 175 (253)
T ss_dssp TTSCTTCCC-----------------TTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHH
T ss_pred CCCCccccC-----------------CCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHH
Confidence 87 899887 8999999999999999999999999999987 779999999999999999999
Q ss_pred HHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHHHHHHHHhhhceeeeccC
Q 038432 464 LVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRITVHDD 535 (602)
Q Consensus 464 Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~~~~~l~~~~~ 535 (602)
|+++|+++|.+|..|.||||+|+..|+.+++++|+++|+|++.+|..|.||+|+|+..++.++++++.....
T Consensus 176 Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~~~ 247 (253)
T 1yyh_A 176 LLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHH 247 (253)
T ss_dssp HHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHC---
T ss_pred HHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHHHHHHcCCHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999877653
No 2
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.1e-38 Score=310.31 Aligned_cols=203 Identities=23% Similarity=0.330 Sum_probs=163.2
Q ss_pred HHhhhhhhcccccccccccCCC----------CCCCCCchhhhHhhhcCcH-HHHHHHHhcCCCCCCCCCCCchHHHHHH
Q 038432 304 LQQHKKLKDLNIGDLIAESGEE----------DGDPNMSVNLLTVASTGNA-AFLDELLKARLDPDIGDSKGRTPLHIAA 372 (602)
Q Consensus 304 l~~~~~~~~~~~~~~l~~~~~~----------~~~~~g~t~L~~A~~~g~~-~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~ 372 (602)
+..+...++.+.++.|++.+.+ ..+..|.||||.|+..+.. .+++.|++.|+++|.+|.+|+||||+||
T Consensus 15 L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G~TpLh~A~ 94 (269)
T 4b93_B 15 LLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSPLHVAA 94 (269)
T ss_dssp HHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCTTSCCHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence 4456666777777777765532 2566789999999988776 5789999999999999999999999999
Q ss_pred hcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHH
Q 038432 373 SKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLC 450 (602)
Q Consensus 373 ~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~ 450 (602)
..|+.++|++|++.|++++..+ ..|.||+|+|+..++.+++++|+++|++++. ..|.||||
T Consensus 95 ~~g~~~~v~~Ll~~~a~~~~~~-----------------~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~ 157 (269)
T 4b93_B 95 LHGRADLIPLLLKHGANAGARN-----------------ADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLI 157 (269)
T ss_dssp HTTCTTHHHHHHHTTCCTTCCC-----------------TTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHH
T ss_pred HcCcHHHHHHHHhcCCCcCccC-----------------CCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHH
Confidence 9999999999999999999998 9999999999999999999999999999987 78999999
Q ss_pred HHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHHHHHHH
Q 038432 451 TAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQK 523 (602)
Q Consensus 451 ~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~ 523 (602)
+|+..|+.+++++|+++|+|+|.+|..|+||||+|+..|+.++|++|+++|||++.+|.+|+||||+|+..++
T Consensus 158 ~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~~ 230 (269)
T 4b93_B 158 YACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSK 230 (269)
T ss_dssp HHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCTTCH
T ss_pred HHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHhCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999986654
No 3
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=2.8e-37 Score=292.78 Aligned_cols=207 Identities=19% Similarity=0.179 Sum_probs=194.4
Q ss_pred cccccccccccCCCC---CCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhccc
Q 038432 312 DLNIGDLIAESGEED---GDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHAS 388 (602)
Q Consensus 312 ~~~~~~~l~~~~~~~---~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~ 388 (602)
..++.+.|++.+.+. .+.+|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..|+.+++++|+++++
T Consensus 3 ~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~ 82 (223)
T 2f8y_A 3 APAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRA 82 (223)
T ss_dssp --CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTT
T ss_pred cHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 456677777777654 46789999999999999999999999999999999999999999999999999999999987
Q ss_pred -CCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHH
Q 038432 389 -NVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELV 465 (602)
Q Consensus 389 -~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll 465 (602)
+++..+ ..|.||||+|+..|+.+++++|+++|++++. ..|.||||+|+..|+.+++++|+
T Consensus 83 ~~~~~~~-----------------~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 145 (223)
T 2f8y_A 83 TDLDARM-----------------HDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLL 145 (223)
T ss_dssp SCTTCCC-----------------TTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHH
T ss_pred CCcccCC-----------------CCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHH
Confidence 888887 8999999999999999999999999999987 77999999999999999999999
Q ss_pred HcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHHHHHHHHhhhceeeeccC
Q 038432 466 KYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRITVHDD 535 (602)
Q Consensus 466 ~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~~~~~l~~~~~ 535 (602)
++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||+++|+..++.+++++|...+.
T Consensus 146 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~ 215 (223)
T 2f8y_A 146 KNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNL 215 (223)
T ss_dssp HTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred HcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999988774
No 4
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=1.3e-37 Score=296.71 Aligned_cols=192 Identities=26% Similarity=0.309 Sum_probs=184.6
Q ss_pred CCCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchh
Q 038432 326 DGDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYD 405 (602)
Q Consensus 326 ~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~ 405 (602)
..+..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++..+
T Consensus 35 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~----------- 103 (231)
T 3aji_A 35 RTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVN----------- 103 (231)
T ss_dssp CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCC-----------
T ss_pred cCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCC-----------
Confidence 467889999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHH
Q 038432 406 IIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIE 483 (602)
Q Consensus 406 ~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh 483 (602)
..|.||||+|+..|+.+++++|+++|++++. ..|.||||+|+..|+.+++++|+++|+++|.+|..|+||||
T Consensus 104 ------~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 177 (231)
T 3aji_A 104 ------QNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLH 177 (231)
T ss_dssp ------TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHH
T ss_pred ------CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHH
Confidence 8999999999999999999999999999987 67999999999999999999999999999999999999999
Q ss_pred HHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHHHHHHHHhhhceeeecc
Q 038432 484 IAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRITVHD 534 (602)
Q Consensus 484 ~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~~~~~l~~~~ 534 (602)
+|+..|+.+++++|+++|+|++.+|..|.||+|+|+..++.+++++|..++
T Consensus 178 ~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~ 228 (231)
T 3aji_A 178 LACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLAEGEE 228 (231)
T ss_dssp HHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhhHHHHHHHHHcccc
Confidence 999999999999999999999999999999999999999988888877654
No 5
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=2.3e-37 Score=300.70 Aligned_cols=210 Identities=16% Similarity=0.137 Sum_probs=162.0
Q ss_pred HHHhhhhhhcccccccccccCCCC--CCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHH
Q 038432 303 FLQQHKKLKDLNIGDLIAESGEED--GDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECV 380 (602)
Q Consensus 303 ll~~~~~~~~~~~~~~l~~~~~~~--~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v 380 (602)
.+..+...++.+..+.|++.+.+. .+.+|.||||+|+..|+.++++.|++.|+++|.+|..|.||||+|+..|+.+++
T Consensus 6 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v 85 (261)
T 2xai_A 6 PMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCV 85 (261)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHH
Confidence 345566667777777777766443 666788888888888888888888888888888888888888888888888888
Q ss_pred HHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCH
Q 038432 381 LVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDM 458 (602)
Q Consensus 381 ~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~ 458 (602)
++|+++|++++.. ..|.||||+|+..|+.+++++|+++|++++. ..|.||||+|+..|+.
T Consensus 86 ~~Ll~~g~~~~~~------------------~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 147 (261)
T 2xai_A 86 NLLLQHGASVQPE------------------SDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQR 147 (261)
T ss_dssp HHHHHTTCCSSCS------------------CTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCH
T ss_pred HHHHHCCCCCCCC------------------CCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHhCCH
Confidence 8888888887754 4578888888888888888888888887776 6777888888888888
Q ss_pred HHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHHHHHHHHhhhceeeec
Q 038432 459 SVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRITVH 533 (602)
Q Consensus 459 ~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~~~~~l~~~ 533 (602)
+++++|+++|+++|. |..|.||||+|+..|+.+++++|+++|+|++.+|..|+||+|+|+. +.++++.+...
T Consensus 148 ~~v~~Ll~~g~~~~~-~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~--~~~~~~~ll~~ 219 (261)
T 2xai_A 148 ACVKKLLESGADVNQ-GKGQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPP--ESPLAQLFLER 219 (261)
T ss_dssp HHHHHHHHHTCCTTC-CBTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSCT--TCTHHHHHHHC
T ss_pred HHHHHHHHcCCCCCC-CCCCCChHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCChhhhccc--cccHHHHHHhc
Confidence 888888888888884 7788888888888888888888888888888888888888888863 23344444443
No 6
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=7.3e-37 Score=297.16 Aligned_cols=190 Identities=23% Similarity=0.272 Sum_probs=182.4
Q ss_pred CCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHH
Q 038432 330 NMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIIL 409 (602)
Q Consensus 330 ~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~ 409 (602)
+|+||||.|+..|+.+++++|++.|+++|.+|..|.||||+|+..|+.+++++|+++|++++..|
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--------------- 66 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVT--------------- 66 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCC---------------
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCC---------------
Confidence 58999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC-CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHc
Q 038432 410 LDMNGNTALWEAISSKHHSIFRILYHCTAISDP-YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAE 488 (602)
Q Consensus 410 ~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~-~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~ 488 (602)
..|.||||+|+..|+.+++++|+++|++++. ..|.||||+|+..|+.+++++|+++|+++|.+|..|.||||+|+..
T Consensus 67 --~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 144 (261)
T 2xai_A 67 --ADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACEN 144 (261)
T ss_dssp --TTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCSCTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHT
T ss_pred --CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHh
Confidence 9999999999999999999999999999987 7799999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHCCCCcccCCCCCCChhhHHHHHHHHhhhceeeeccCCC
Q 038432 489 NNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRITVHDDNS 537 (602)
Q Consensus 489 ~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~~~~~l~~~~~~~ 537 (602)
|+.+++++|+++|++++. |..|.||||+|+..++.++++.|+..+.+.
T Consensus 145 ~~~~~v~~Ll~~g~~~~~-~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad~ 192 (261)
T 2xai_A 145 QQRACVKKLLESGADVNQ-GKGQDSPLHAVARTASEELACLLMDFGADT 192 (261)
T ss_dssp TCHHHHHHHHHHTCCTTC-CBTTBCHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred CCHHHHHHHHHcCCCCCC-CCCCCChHHHHHHcCCHHHHHHHHHcCCCC
Confidence 999999999999999995 899999999999999999999999887544
No 7
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=3.8e-37 Score=302.81 Aligned_cols=194 Identities=20% Similarity=0.232 Sum_probs=156.7
Q ss_pred CCCCCCchhhhHhhhcCcHHHHHHHHhcCCC---CCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhcc
Q 038432 326 DGDPNMSVNLLTVASTGNAAFLDELLKARLD---PDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNL 402 (602)
Q Consensus 326 ~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~---~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~ 402 (602)
..+.+|.||||+||..|+.+++++|++.|++ +|.+|..|+||||+|+..|+.+++++|+++|++++..+
T Consensus 4 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~-------- 75 (282)
T 1oy3_D 4 YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAE-------- 75 (282)
T ss_dssp CCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCC--------
T ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCC--------
Confidence 3567788888888888888888888888777 67788888888888888888888888888888888877
Q ss_pred chhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCC-------------------------------------------
Q 038432 403 SYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAI------------------------------------------- 439 (602)
Q Consensus 403 ~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~------------------------------------------- 439 (602)
..|.||||+|+..|+.+++++|+++|++
T Consensus 76 ---------~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (282)
T 1oy3_D 76 ---------RGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDED 146 (282)
T ss_dssp ---------TTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCC
T ss_pred ---------CCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhh
Confidence 7888888888888888888888887754
Q ss_pred ----CCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCC-CcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCC
Q 038432 440 ----SDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRH-GRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEF 512 (602)
Q Consensus 440 ----~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~-g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~ 512 (602)
++. ..|.||||+|+..|+.+++++|+++|++++.++.. |+||||+|+..|+.+++++|+++|+|++.+|..|.
T Consensus 147 ~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~ 226 (282)
T 1oy3_D 147 WRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGR 226 (282)
T ss_dssp GGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred hhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCC
Confidence 222 46778888888888888888888888888887754 88888888888888888888888888888888888
Q ss_pred ChhhHHHHHHHHhhhceeeeccCC
Q 038432 513 SSTNLNDMLQKREIGHRITVHDDN 536 (602)
Q Consensus 513 t~l~~a~~~~~~~~~~~l~~~~~~ 536 (602)
||||+|+..++.++++.|+.++++
T Consensus 227 tpL~~A~~~~~~~~v~~Ll~~ga~ 250 (282)
T 1oy3_D 227 TPLGSALLRPNPILARLLRAHGAP 250 (282)
T ss_dssp CHHHHHHTSSCHHHHHHHHHTTCC
T ss_pred CHHHHHHHcCCcHHHHHHHHcCCC
Confidence 888888888887777777776643
No 8
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=7.4e-37 Score=293.44 Aligned_cols=213 Identities=20% Similarity=0.205 Sum_probs=185.6
Q ss_pred Hhhhhhhcccccccccc----cC--CCCCCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChH
Q 038432 305 QQHKKLKDLNIGDLIAE----SG--EEDGDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEE 378 (602)
Q Consensus 305 ~~~~~~~~~~~~~~l~~----~~--~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~ 378 (602)
..+...++.+..+.+++ .+ .+..+..|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..|+.+
T Consensus 14 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~ 93 (241)
T 1k1a_A 14 HIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPT 93 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHH
Confidence 33444444444444443 23 3346778999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccc----CCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC---CCcchhHHH
Q 038432 379 CVLVLLKHAS----NVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP---YTAGDLLCT 451 (602)
Q Consensus 379 ~v~~Ll~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~---~~g~t~L~~ 451 (602)
++++|+++++ +++..+ ..|.||||+|+..|+.+++++|+++|++++. ..|.||||+
T Consensus 94 ~~~~Ll~~~~~~~~~~~~~~-----------------~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~ 156 (241)
T 1k1a_A 94 CLRALLDSAAPGTLDLEARN-----------------YDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIH 156 (241)
T ss_dssp HHHHHHHHSCTTSCCTTCCC-----------------TTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHH
T ss_pred HHHHHHHcCCCccccccccC-----------------cCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHH
Confidence 9999999987 777776 8999999999999999999999999999887 469999999
Q ss_pred HHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHHHHHHHHhhhceee
Q 038432 452 AEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRIT 531 (602)
Q Consensus 452 A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~~~~~l~ 531 (602)
|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|+|++.+|..|.||+|+|+..++.++++.+.
T Consensus 157 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~i~~~l~ 236 (241)
T 1k1a_A 157 AVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKA 236 (241)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHTC--
T ss_pred HHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred ecc
Q 038432 532 VHD 534 (602)
Q Consensus 532 ~~~ 534 (602)
...
T Consensus 237 ~~~ 239 (241)
T 1k1a_A 237 TRP 239 (241)
T ss_dssp ---
T ss_pred cCC
Confidence 664
No 9
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=8.1e-37 Score=300.69 Aligned_cols=196 Identities=22% Similarity=0.242 Sum_probs=185.5
Q ss_pred ccCCCCCCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHh
Q 038432 321 ESGEEDGDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMY 400 (602)
Q Consensus 321 ~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~ 400 (602)
......++.+|+||||+||..|+.+++++|++.|+++|.+|.+|+||||+|+..|+.+++++|+++|++++..|
T Consensus 49 ~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~------ 122 (285)
T 3d9h_A 49 SNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVT------ 122 (285)
T ss_dssp CCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCC------
T ss_pred hCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCC------
Confidence 33445578899999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC-CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCc
Q 038432 401 NLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP-YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGR 479 (602)
Q Consensus 401 ~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~-~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~ 479 (602)
..|.||||+|+..|+.+++++|+++|++++. ..|.||||+|+..|+.+++++|+++|++++.+|..|.
T Consensus 123 -----------~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~ 191 (285)
T 3d9h_A 123 -----------ADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLG 191 (285)
T ss_dssp -----------TTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSCTTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTB
T ss_pred -----------CCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCC
Confidence 9999999999999999999999999999887 7799999999999999999999999999999999999
Q ss_pred CHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHHHHHHHHhhhceeeecc
Q 038432 480 TAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRITVHD 534 (602)
Q Consensus 480 TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~~~~~l~~~~ 534 (602)
||||+|+..|+.+++++|+++|++++. |..|.||||+|+..++.++++.|+..+
T Consensus 192 t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g 245 (285)
T 3d9h_A 192 TPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVRTASEELACLLMDFG 245 (285)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTT
T ss_pred CHHHHHHHcCcHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence 999999999999999999999999994 999999999999999999888887765
No 10
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=8.7e-38 Score=302.29 Aligned_cols=221 Identities=21% Similarity=0.231 Sum_probs=169.0
Q ss_pred CCCCCCCchhhhHhhhcC-------------cHHHHHHHHhcCCCCCC-CCCCCchHHHHHHhcCChHHHHHHHhcccCC
Q 038432 325 EDGDPNMSVNLLTVASTG-------------NAAFLDELLKARLDPDI-GDSKGRTPLHIAASKGHEECVLVLLKHASNV 390 (602)
Q Consensus 325 ~~~~~~g~t~L~~A~~~g-------------~~~~~~~Ll~~g~~~n~-~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~ 390 (602)
+.++.+|.||||+|+..| +.++++.|++.|++++. .|..|+||||+|+..|+.++|++|+++|+++
T Consensus 4 n~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~ 83 (253)
T 1yyh_A 4 NVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA 83 (253)
T ss_dssp ------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred CCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 346788999999999977 89999999999999865 4899999999999999999999999999999
Q ss_pred CchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCC-CCCC--CCcchhHHHHHhcCCHHHHHHHHHc
Q 038432 391 HLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTA-ISDP--YTAGDLLCTAEKRNDMSVMEELVKY 467 (602)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~-~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ 467 (602)
+..+ ..|.||||+|+..|+.+++++|+++|+ +++. ..|.||||+|+..|+.+++++|+++
T Consensus 84 ~~~~-----------------~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 146 (253)
T 1yyh_A 84 NIQD-----------------NMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS 146 (253)
T ss_dssp TCCC-----------------TTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHT
T ss_pred CCCC-----------------CCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHc
Confidence 9998 999999999999999999999999987 6665 7899999999999999999999999
Q ss_pred CCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHHHHHHHHhhhceeeeccCCCchhHHHhhhh
Q 038432 468 GLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRITVHDDNSTQNEVLLKKL 547 (602)
Q Consensus 468 ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 547 (602)
|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.++++.|+.++.
T Consensus 147 g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga------------ 214 (253)
T 1yyh_A 147 HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFA------------ 214 (253)
T ss_dssp TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC------------
T ss_pred CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCC------------
Confidence 99999999999999999999999999999999999999999999999999999999998888887762
Q ss_pred hhhhhhhhcCCCCCCcceeEEEecCCCccccc
Q 038432 548 EIIDFEAKEGKSKGGNCQRVSIYRGHPLVRKQ 579 (602)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 579 (602)
+. ......|.++.++++..||..+...
T Consensus 215 -~~----~~~d~~g~tpl~~A~~~g~~~i~~~ 241 (253)
T 1yyh_A 215 -NR----DITDHMDRLPRDIAQERMHHDIVRL 241 (253)
T ss_dssp -CT----TCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred -Cc----cccccCCCCHHHHHHHcCCHHHHHH
Confidence 22 2234467888888888888654433
No 11
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=1.3e-36 Score=289.97 Aligned_cols=188 Identities=21% Similarity=0.226 Sum_probs=178.5
Q ss_pred CCchhhhHhhhcCcHHHHHHHHhc-CCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCC-----CchhhHHHHhccc
Q 038432 330 NMSVNLLTVASTGNAAFLDELLKA-RLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNV-----HLRDYIIFMYNLS 403 (602)
Q Consensus 330 ~g~t~L~~A~~~g~~~~~~~Ll~~-g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~-----~~~~~~~~~~~~~ 403 (602)
.|+||||.|+..|+.++++.|++. |+++|.+|..|+||||+|+..|+.+++++|+++|+++ +..|
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~--------- 72 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSEL--------- 72 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTT---------
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccC---------
Confidence 478999999999999999999997 9999999999999999999999999999999999987 5555
Q ss_pred hhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCCC---------------CcchhHHHHHhcCCHHHHHHHHHcC
Q 038432 404 YDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPY---------------TAGDLLCTAEKRNDMSVMEELVKYG 468 (602)
Q Consensus 404 ~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~---------------~g~t~L~~A~~~~~~~~~~~Ll~~g 468 (602)
..|.||||+|+..|+.+++++|+++|++++.. .|.||||+|+..|+.+++++|+++|
T Consensus 73 --------~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 144 (232)
T 2rfa_A 73 --------YEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHG 144 (232)
T ss_dssp --------TTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTT
T ss_pred --------CCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence 78999999999999999999999999999872 5999999999999999999999999
Q ss_pred CCCCCCCCCCcCHHHHHHHcCcHHHH----HHHHHCCCCc------ccCCCCCCChhhHHHHHHHHhhhceeeecc
Q 038432 469 LNVDSKDRHGRTAIEIAMAENNVEMV----NFLVMNGSDV------VGANKCEFSSTNLNDMLQKREIGHRITVHD 534 (602)
Q Consensus 469 a~~n~~d~~g~TpLh~A~~~~~~~iv----~~Ll~~ga~~------~~~d~~g~t~l~~a~~~~~~~~~~~l~~~~ 534 (602)
+|+|.+|.+|+||||+|+..|+.+++ ++|+++|+++ +.+|..|.||||+|+..++.++++.|+.++
T Consensus 145 a~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g 220 (232)
T 2rfa_A 145 ADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKR 220 (232)
T ss_dssp CCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence 99999999999999999999999988 9999999998 689999999999999999999999988776
No 12
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=3.1e-36 Score=270.62 Aligned_cols=157 Identities=29% Similarity=0.455 Sum_probs=148.0
Q ss_pred hhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhhc
Q 038432 333 VNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDM 412 (602)
Q Consensus 333 t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (602)
++|+.||+.|+.++++.|++.|+|+|.+|.+|+||||+|+..++.+++++|+++|++++.+| .
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d-----------------~ 68 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKD-----------------S 68 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-----------------T
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhc-----------------c
Confidence 57999999999999999999999999999999999999999999999999999999999998 9
Q ss_pred cCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCc
Q 038432 413 NGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENN 490 (602)
Q Consensus 413 ~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~ 490 (602)
.|.||||+|+..|+.+++++|+++|++++. ..|+||||+|+..|+.+++++|+++|+|++.+|.+|+||||+|+..|+
T Consensus 69 ~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~ 148 (169)
T 4gpm_A 69 DGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGN 148 (169)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCC
Confidence 999999999999999999999999999987 789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCccc
Q 038432 491 VEMVNFLVMNGSDVVG 506 (602)
Q Consensus 491 ~~iv~~Ll~~ga~~~~ 506 (602)
.+++++|+++|||++.
T Consensus 149 ~~iv~~Ll~~GA~ie~ 164 (169)
T 4gpm_A 149 EEVVKLLEKQGGWLEH 164 (169)
T ss_dssp HHHHHHHHTC------
T ss_pred HHHHHHHHHCCCCcCC
Confidence 9999999999999974
No 13
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=2.3e-36 Score=289.25 Aligned_cols=201 Identities=23% Similarity=0.244 Sum_probs=123.3
Q ss_pred hhhhhcccccccccccCCCC--CCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHHH
Q 038432 307 HKKLKDLNIGDLIAESGEED--GDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLL 384 (602)
Q Consensus 307 ~~~~~~~~~~~~l~~~~~~~--~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll 384 (602)
+...+..+..+.|++.+.+. .+..|.||||.|+..|+.+++++|++.|++++..|..|.||||+|+..|+.+++++|+
T Consensus 18 A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll 97 (237)
T 3b7b_A 18 AAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLL 97 (237)
T ss_dssp HHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH
Confidence 33334444444444444322 3445566666666666666666666666666666666666666666666666666666
Q ss_pred hcc-cCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHH
Q 038432 385 KHA-SNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVM 461 (602)
Q Consensus 385 ~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~ 461 (602)
++| ++++..+ ..|.||||+|+..|+.+++++|+++|++++. ..|.||||+|+..|+.+++
T Consensus 98 ~~~~~~~~~~~-----------------~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~ 160 (237)
T 3b7b_A 98 SNGQMDVNCQD-----------------DGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIA 160 (237)
T ss_dssp TTTCCCTTCCC-----------------TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHH
T ss_pred hCCCCCcccCC-----------------CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHH
Confidence 655 5555554 5666666666666666666666666666655 4566666666666666666
Q ss_pred HHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHHHHHHHH
Q 038432 462 EELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKR 524 (602)
Q Consensus 462 ~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~ 524 (602)
++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+|++.+|..|.||+|+|+..++.
T Consensus 161 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~ 223 (237)
T 3b7b_A 161 EILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQV 223 (237)
T ss_dssp HHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHH
T ss_pred HHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHHH
Confidence 666666666666666666666666666666666666666666666666666666666555543
No 14
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=1.7e-36 Score=298.16 Aligned_cols=220 Identities=19% Similarity=0.152 Sum_probs=172.3
Q ss_pred HHhhhhhhcccccccccccCC-----CCCCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChH
Q 038432 304 LQQHKKLKDLNIGDLIAESGE-----EDGDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEE 378 (602)
Q Consensus 304 l~~~~~~~~~~~~~~l~~~~~-----~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~ 378 (602)
+..+...+..+..+.|++.+. +.++..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+
T Consensus 13 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~ 92 (282)
T 1oy3_D 13 LHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHT 92 (282)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTTTTCHH
T ss_pred HHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcc
Confidence 444555566666666665443 346788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccCCCchhhHHHH------------------------------hccchhHHHHhhccCCcHHHHHHHcCChh
Q 038432 379 CVLVLLKHASNVHLRDYIIFM------------------------------YNLSYDIIILLDMNGNTALWEAISSKHHS 428 (602)
Q Consensus 379 ~v~~Ll~~g~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~g~tpLh~A~~~~~~~ 428 (602)
++++|+++|++.+........ .......++..+..|.||||+|+..|+.+
T Consensus 93 ~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~ 172 (282)
T 1oy3_D 93 CACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAE 172 (282)
T ss_dssp HHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHH
T ss_pred hhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHH
Confidence 999999998774332200000 00000112334688999999999999999
Q ss_pred HHHHHHhcCCCCCCC---CcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcc
Q 038432 429 IFRILYHCTAISDPY---TAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVV 505 (602)
Q Consensus 429 ~~~~Ll~~g~~~~~~---~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~ 505 (602)
++++|+++|++++.. .|.||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++||+++
T Consensus 173 ~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~ 252 (282)
T 1oy3_D 173 MVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEP 252 (282)
T ss_dssp HHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCC
T ss_pred HHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcC
Confidence 999999999999882 39999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCChhhHHHHHHH
Q 038432 506 GANKCEFSSTNLNDMLQK 523 (602)
Q Consensus 506 ~~d~~g~t~l~~a~~~~~ 523 (602)
.+|..|.||+++|.....
T Consensus 253 ~~~~~g~tpl~~a~~~~~ 270 (282)
T 1oy3_D 253 EDGGDKLSPCSSSGSDSD 270 (282)
T ss_dssp CCC---------------
T ss_pred cCCCcccccccccCCccc
Confidence 999999999999976543
No 15
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=5.3e-36 Score=286.80 Aligned_cols=216 Identities=18% Similarity=0.181 Sum_probs=197.5
Q ss_pred CCCCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccch
Q 038432 325 EDGDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSY 404 (602)
Q Consensus 325 ~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~ 404 (602)
+.++.+|.||||.|+..|+.+++++|++.|++++..|..|.||||+|+..|+.+++++|+++|++++..+
T Consensus 5 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~---------- 74 (237)
T 3b7b_A 5 KMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKD---------- 74 (237)
T ss_dssp CCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCC----------
T ss_pred ccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCC----------
Confidence 3467889999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hHHHHhhccCCcHHHHHHHcCChhHHHHHHhcC-CCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCH
Q 038432 405 DIIILLDMNGNTALWEAISSKHHSIFRILYHCT-AISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTA 481 (602)
Q Consensus 405 ~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g-~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~Tp 481 (602)
..|.||||+|+..|+.+++++|+++| ++++. ..|.||||+|+..|+.+++++|+++|++++.+|..|.||
T Consensus 75 -------~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~ 147 (237)
T 3b7b_A 75 -------AEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENIC 147 (237)
T ss_dssp -------TTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred -------CCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCH
Confidence 89999999999999999999999999 67765 779999999999999999999999999999999999999
Q ss_pred HHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHHHHHHHHhhhceeeeccCCCchhHHHhhhhhhhhhhhhcCCCCC
Q 038432 482 IEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRITVHDDNSTQNEVLLKKLEIIDFEAKEGKSKG 561 (602)
Q Consensus 482 Lh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (602)
||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.++++.|..++.+ . ......|
T Consensus 148 L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad-------------~----~~~d~~g 210 (237)
T 3b7b_A 148 LHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSD-------------V----TLKNKEG 210 (237)
T ss_dssp HHHHHHHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-------------T----TCCCTTS
T ss_pred HHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCC-------------C----CccCCCC
Confidence 9999999999999999999999999999999999999999999988888776632 2 2234466
Q ss_pred CcceeEEEecCCC
Q 038432 562 GNCQRVSIYRGHP 574 (602)
Q Consensus 562 ~~~~~~~~~~~~~ 574 (602)
.++.++++..|+.
T Consensus 211 ~t~l~~A~~~~~~ 223 (237)
T 3b7b_A 211 ETPLQCASLNSQV 223 (237)
T ss_dssp CCHHHHSCTTCHH
T ss_pred CCHHHHHHHHHHH
Confidence 7777777776654
No 16
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=7.5e-36 Score=286.43 Aligned_cols=215 Identities=19% Similarity=0.201 Sum_probs=192.3
Q ss_pred CCCCCCchhhhHhhhcCcHHHHHHHHh----cCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhc
Q 038432 326 DGDPNMSVNLLTVASTGNAAFLDELLK----ARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYN 401 (602)
Q Consensus 326 ~~~~~g~t~L~~A~~~g~~~~~~~Ll~----~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~ 401 (602)
.++.+|.||||+||..|+.++++.|++ .|.++|..|..|.||||+|+..|+.+++++|+++|++++..+
T Consensus 4 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~------- 76 (241)
T 1k1a_A 4 RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALD------- 76 (241)
T ss_dssp ---CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-------
T ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccC-------
Confidence 457889999999999999999999997 799999999999999999999999999999999999999998
Q ss_pred cchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCC----CCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCC
Q 038432 402 LSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTA----ISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKD 475 (602)
Q Consensus 402 ~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~----~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d 475 (602)
..|.||||+|+..|+.+++++|+++++ +++. ..|.||||+|+..|+.+++++|+++|++++..|
T Consensus 77 ----------~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~ 146 (241)
T 1k1a_A 77 ----------RHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVD 146 (241)
T ss_dssp ----------TTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCC
T ss_pred ----------CCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCccccc
Confidence 899999999999999999999999987 5555 789999999999999999999999999999999
Q ss_pred -CCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHHHHHHHHhhhceeeeccCCCchhHHHhhhhhhhhhhh
Q 038432 476 -RHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRITVHDDNSTQNEVLLKKLEIIDFEA 554 (602)
Q Consensus 476 -~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 554 (602)
..|.||||+|+..|+.+++++|+++|+|++.+|..|.||||+|+..++.++++.|+..+. +.+.
T Consensus 147 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga-------------~~~~-- 211 (241)
T 1k1a_A 147 IKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGA-------------DSSL-- 211 (241)
T ss_dssp TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTC-------------CTTC--
T ss_pred ccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCC-------------CCCC--
Confidence 899999999999999999999999999999999999999999999999999888887763 2222
Q ss_pred hcCCCCCCcceeEEEecCCC
Q 038432 555 KEGKSKGGNCQRVSIYRGHP 574 (602)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~ 574 (602)
....|.++.++++..|+.
T Consensus 212 --~~~~g~tpl~~A~~~~~~ 229 (241)
T 1k1a_A 212 --KNCHNDTPLMVARSRRVI 229 (241)
T ss_dssp --CCTTSCCTTTTCSSHHHH
T ss_pred --cCCCCCCHHHHHHhcCcH
Confidence 233556666666665553
No 17
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.7e-35 Score=291.36 Aligned_cols=234 Identities=18% Similarity=0.252 Sum_probs=164.1
Q ss_pred HHHhhhhhhcccccccccccCCCC--C-CCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHH
Q 038432 303 FLQQHKKLKDLNIGDLIAESGEED--G-DPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEEC 379 (602)
Q Consensus 303 ll~~~~~~~~~~~~~~l~~~~~~~--~-~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~ 379 (602)
.+..+...++.+..+.|++.+.+. . +..|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..|+.++
T Consensus 8 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~ 87 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKL 87 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHH
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHH
Confidence 344555666666666666666544 2 5567788888888888888888888888888888888888888888888888
Q ss_pred HHHHHhcccCCCchh------hHHHHhccchhHHHHh--------------------hccCCcHHHHHHHcCChhHHHHH
Q 038432 380 VLVLLKHASNVHLRD------YIIFMYNLSYDIIILL--------------------DMNGNTALWEAISSKHHSIFRIL 433 (602)
Q Consensus 380 v~~Ll~~g~~~~~~~------~~~~~~~~~~~~~~~~--------------------~~~g~tpLh~A~~~~~~~~~~~L 433 (602)
+++|+++|++++..+ ...+...++.+++..+ +..|.||||+|+..|+.+++++|
T Consensus 88 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 167 (285)
T 1wdy_A 88 LKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKIL 167 (285)
T ss_dssp HHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHH
Confidence 888888888887665 2223333333333221 45566777777777777777777
Q ss_pred Hhc-CCCCCC--CCcchhHHHHHhcCC----HHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHH-CCCCcc
Q 038432 434 YHC-TAISDP--YTAGDLLCTAEKRND----MSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVM-NGSDVV 505 (602)
Q Consensus 434 l~~-g~~~~~--~~g~t~L~~A~~~~~----~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~-~ga~~~ 505 (602)
++. |++++. ..|.||||.|+..++ .+++++|+++|+++|.+|..|+||||+|+..|+.+++++|++ .|++++
T Consensus 168 l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~ 247 (285)
T 1wdy_A 168 LDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIN 247 (285)
T ss_dssp HHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTT
T ss_pred HHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCcc
Confidence 765 666665 567777777777777 677777777777777777777777777777777777777777 677777
Q ss_pred cCCCCCCChhhHHHHHHHHhhhceeeeccCC
Q 038432 506 GANKCEFSSTNLNDMLQKREIGHRITVHDDN 536 (602)
Q Consensus 506 ~~d~~g~t~l~~a~~~~~~~~~~~l~~~~~~ 536 (602)
.+|..|.||||+|+..++.++++.|+.++++
T Consensus 248 ~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~ 278 (285)
T 1wdy_A 248 DTDSDGKTALLLAVELKLKKIAELLCKRGAS 278 (285)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHHHSSC
T ss_pred ccCCCCCcHHHHHHHcCcHHHHHHHHHcCCC
Confidence 7777777777777777777777766666543
No 18
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=1.2e-35 Score=301.73 Aligned_cols=219 Identities=21% Similarity=0.195 Sum_probs=197.7
Q ss_pred HHHHHhhhhhhccccccccccc-CC--CCCCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCCh
Q 038432 301 KNFLQQHKKLKDLNIGDLIAES-GE--EDGDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHE 377 (602)
Q Consensus 301 ~~ll~~~~~~~~~~~~~~l~~~-~~--~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~ 377 (602)
...+..+...++.+..+.++.. +. +..+..|.||||+|+..|+.+++++|++.|+++|.+|..|.||||+|+..|+.
T Consensus 25 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~ 104 (351)
T 3utm_A 25 KDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHY 104 (351)
T ss_dssp HHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred chhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHCCCH
Confidence 3455666667777655554443 43 34678899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC---------------
Q 038432 378 ECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--------------- 442 (602)
Q Consensus 378 ~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--------------- 442 (602)
+++++|+++|++++..+ ..|.||||+|+..|+.+++++|+++|++++.
T Consensus 105 ~iv~~Ll~~g~~~~~~~-----------------~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~ 167 (351)
T 3utm_A 105 EVTELLLKHGACVNAMD-----------------LWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTP 167 (351)
T ss_dssp HHHHHHHHTTCCTTCCC-----------------TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSH
T ss_pred HHHHHHHHCCCCCCCCC-----------------CCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhh
Confidence 99999999999999998 8999999999999999999999999998763
Q ss_pred -----------------------------------------CCcchhHHHHHhc---CCHHHHHHHHHcCCCCCCCCCCC
Q 038432 443 -----------------------------------------YTAGDLLCTAEKR---NDMSVMEELVKYGLNVDSKDRHG 478 (602)
Q Consensus 443 -----------------------------------------~~g~t~L~~A~~~---~~~~~~~~Ll~~ga~~n~~d~~g 478 (602)
..|.||||+|+.. +..+++++|+++|+++|.+|..|
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g 247 (351)
T 3utm_A 168 ELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDF 247 (351)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTC
T ss_pred hhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCC
Confidence 3567999999999 55899999999999999999999
Q ss_pred cCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHHHHHHHHhhhceeeeccCC
Q 038432 479 RTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRITVHDDN 536 (602)
Q Consensus 479 ~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~~~~~l~~~~~~ 536 (602)
+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.++++.|+..+.+
T Consensus 248 ~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad 305 (351)
T 3utm_A 248 MTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSD 305 (351)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred CCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999999999999999888744
No 19
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=8.9e-37 Score=300.28 Aligned_cols=207 Identities=18% Similarity=0.104 Sum_probs=189.1
Q ss_pred cccccccccccCCCCCCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCC
Q 038432 312 DLNIGDLIAESGEEDGDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVH 391 (602)
Q Consensus 312 ~~~~~~~l~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~ 391 (602)
..++.++|.+...+.++.+|.||||+|+..|+.+++++|++.|+++|..| |+||||+|+..|+.+++++|+++|++++
T Consensus 12 ~~~v~~lL~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~ga~~~ 89 (285)
T 3kea_A 12 SKQLKSFLSSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLDDS 89 (285)
T ss_dssp HHHHHHHHHSTTTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCT--TCCHHHHHTTSSSCHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHhCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC--CCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence 33444455555566788999999999999999999999999999999884 9999999999999999999999999999
Q ss_pred chhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCc-chhHHHHHhcCCHHHHHHHHHcC
Q 038432 392 LRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTA-GDLLCTAEKRNDMSVMEELVKYG 468 (602)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g-~t~L~~A~~~~~~~~~~~Ll~~g 468 (602)
..| ..|.||||+|+..|+.+++++|+++|++++. ..| .||||+|+..|+.+++++|+++|
T Consensus 90 ~~d-----------------~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g 152 (285)
T 3kea_A 90 QFD-----------------DKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEI 152 (285)
T ss_dssp CCC-----------------TTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTS
T ss_pred CcC-----------------CCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCC
Confidence 998 8999999999999999999999999999987 566 79999999999999999999999
Q ss_pred CCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCCh-hhHHHHHHHHhhhceeeeccCCCc
Q 038432 469 LNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSS-TNLNDMLQKREIGHRITVHDDNST 538 (602)
Q Consensus 469 a~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~-l~~a~~~~~~~~~~~l~~~~~~~~ 538 (602)
+++... ..|.||||+|+..|+.+++++|+++|+|++.+|..|.|| ||+|+..++.++++.|+.++.+..
T Consensus 153 ~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~ 222 (285)
T 3kea_A 153 PSTFDL-AILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIY 222 (285)
T ss_dssp CTTCCC-STHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCST
T ss_pred Cccccc-cCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 987433 389999999999999999999999999999999999998 999999999999999998876554
No 20
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=3.9e-36 Score=295.83 Aligned_cols=207 Identities=16% Similarity=0.146 Sum_probs=185.4
Q ss_pred hhhhhhcccccccccccCCCC--CCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHH
Q 038432 306 QHKKLKDLNIGDLIAESGEED--GDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVL 383 (602)
Q Consensus 306 ~~~~~~~~~~~~~l~~~~~~~--~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~L 383 (602)
.+...+..+..+.|++.+.+. .+.+|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|
T Consensus 65 ~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~L 144 (285)
T 3d9h_A 65 EAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLL 144 (285)
T ss_dssp HHHHTTCHHHHHHHHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHH
Confidence 344445555555555555433 678899999999999999999999999999999999999999999999999999999
Q ss_pred HhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHH
Q 038432 384 LKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVM 461 (602)
Q Consensus 384 l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~ 461 (602)
+++|++++.. ..|.||||+|+..|+.+++++|+++|++++. ..|.||||+|+..|+.+++
T Consensus 145 l~~g~~~~~~------------------~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v 206 (285)
T 3d9h_A 145 LQHGASVQPE------------------SDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACV 206 (285)
T ss_dssp HHTTCCSSCS------------------CTTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHH
T ss_pred HHCCCCCCCC------------------CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHH
Confidence 9999999865 4599999999999999999999999999987 7899999999999999999
Q ss_pred HHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHHHHHHHHhhhceeeec
Q 038432 462 EELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRITVH 533 (602)
Q Consensus 462 ~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~~~~~l~~~ 533 (602)
++|+++|+++|. |..|+||||+|+..|+.+++++|+++|+|++.+|.+|+||||+|+ ++.++++.|..+
T Consensus 207 ~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~ 275 (285)
T 3d9h_A 207 KKLLESGADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVP--PESPLAQLFLER 275 (285)
T ss_dssp HHHHHTTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSC--TTSHHHHHHHHH
T ss_pred HHHHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHhc--CccHHHHHHHHh
Confidence 999999999995 899999999999999999999999999999999999999999998 445566666555
No 21
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=1.9e-35 Score=275.23 Aligned_cols=188 Identities=20% Similarity=0.267 Sum_probs=177.9
Q ss_pred CCCchhhhHhhhcCcHHHHHHHHhcCC-CCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHH
Q 038432 329 PNMSVNLLTVASTGNAAFLDELLKARL-DPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDII 407 (602)
Q Consensus 329 ~~g~t~L~~A~~~g~~~~~~~Ll~~g~-~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~ 407 (602)
..+.||||.|+..|+.+.++.|++.+. ++|..|..|.||||+|+..|+.+++++|+++|++++..+
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~------------- 69 (201)
T 3hra_A 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQN------------- 69 (201)
T ss_dssp CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCC-------------
T ss_pred cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCC-------------
Confidence 456899999999999999999999765 999999999999999999999999999999999999998
Q ss_pred HHhhccCCcHHHHHHHcCChhHHHHHH-hcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcC-CCCCCCCCCCcCHHH
Q 038432 408 ILLDMNGNTALWEAISSKHHSIFRILY-HCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYG-LNVDSKDRHGRTAIE 483 (602)
Q Consensus 408 ~~~~~~g~tpLh~A~~~~~~~~~~~Ll-~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~g-a~~n~~d~~g~TpLh 483 (602)
..|.||||+|+..|+.+++++|+ ..+++++. ..|.||||+|+..|+.+++++|+++| ++++.+|..|+||||
T Consensus 70 ----~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~ 145 (201)
T 3hra_A 70 ----SISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALI 145 (201)
T ss_dssp ----TTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHH
T ss_pred ----CCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHH
Confidence 89999999999999999999999 55667776 77999999999999999999999999 999999999999999
Q ss_pred HHHHcCc-----HHHHHHHHHCCCCcccCCCCCCChhhHHHHHHHHhhhceeeec
Q 038432 484 IAMAENN-----VEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRITVH 533 (602)
Q Consensus 484 ~A~~~~~-----~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~~~~~l~~~ 533 (602)
+|+..++ .+++++|+++|+|++.+|..|.||||+|+..++.++++.|..+
T Consensus 146 ~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 200 (201)
T 3hra_A 146 EAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQY 200 (201)
T ss_dssp HHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTC
T ss_pred HHHHhccchhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhc
Confidence 9999998 9999999999999999999999999999999999999888765
No 22
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=1.3e-35 Score=303.84 Aligned_cols=217 Identities=21% Similarity=0.268 Sum_probs=198.1
Q ss_pred HHHHhhhhhhccccccccc--------ccCCC--CCCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHH
Q 038432 302 NFLQQHKKLKDLNIGDLIA--------ESGEE--DGDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIA 371 (602)
Q Consensus 302 ~ll~~~~~~~~~~~~~~l~--------~~~~~--~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A 371 (602)
+.+..+...+..+..+.|+ +.+.+ ..+.+|.||||+|+..|+.+++++|++.|++++..|..|.||||+|
T Consensus 127 t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A 206 (373)
T 2fo1_E 127 TVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQA 206 (373)
T ss_dssp CHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHH
T ss_pred CHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHH
Confidence 3455566666776666665 45543 4778999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHhcc---cCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcC---ChhHHHHHHhcCCCCCC---
Q 038432 372 ASKGHEECVLVLLKHA---SNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSK---HHSIFRILYHCTAISDP--- 442 (602)
Q Consensus 372 ~~~g~~~~v~~Ll~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~---~~~~~~~Ll~~g~~~~~--- 442 (602)
+..|+.+++++|+++| ++++..| ..|.||||+|+..+ +.+++++|+++|++++.
T Consensus 207 ~~~g~~~~v~~Ll~~~~~~~~~~~~d-----------------~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~ 269 (373)
T 2fo1_E 207 AANRDFGMMVYMLNSTKLKGDIEELD-----------------RNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGA 269 (373)
T ss_dssp HHTTCHHHHHHHTTSHHHHHTTSCCC-----------------TTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSG
T ss_pred HHCCCHHHHHHHHhcCccccChhhcC-----------------CCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccc
Confidence 9999999999999998 8999988 99999999999998 89999999999999874
Q ss_pred -------CCcchhHHHHHhcCCHHHHHHHHHcC-CCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCCh
Q 038432 443 -------YTAGDLLCTAEKRNDMSVMEELVKYG-LNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSS 514 (602)
Q Consensus 443 -------~~g~t~L~~A~~~~~~~~~~~Ll~~g-a~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~ 514 (602)
..|.||||+|+..|+.+++++|+++| +++|.+|..|+||||+|+..|+.++|++|+++|+|++.+|..|.||
T Consensus 270 ~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~ 349 (373)
T 2fo1_E 270 ARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTA 349 (373)
T ss_dssp GGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCH
T ss_pred cccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCH
Confidence 47899999999999999999999876 9999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhhhceeeeccC
Q 038432 515 TNLNDMLQKREIGHRITVHDD 535 (602)
Q Consensus 515 l~~a~~~~~~~~~~~l~~~~~ 535 (602)
||+|+..++.++++.|...++
T Consensus 350 l~~A~~~g~~~iv~~Ll~~~a 370 (373)
T 2fo1_E 350 RQLAQANNHHNIVDIFDRCRP 370 (373)
T ss_dssp HHHHHHTTCHHHHHHHHTTC-
T ss_pred HHHHHHcCCHHHHHHHHhcCc
Confidence 999999999999999988763
No 23
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=1.2e-35 Score=282.48 Aligned_cols=200 Identities=21% Similarity=0.168 Sum_probs=175.3
Q ss_pred HhhhhhhcccccccccccCCC---CCCCCCchhhhHhhhcCcHHHHHHHHhcC--CCCCC-CCCCCchHHHHHHhcCChH
Q 038432 305 QQHKKLKDLNIGDLIAESGEE---DGDPNMSVNLLTVASTGNAAFLDELLKAR--LDPDI-GDSKGRTPLHIAASKGHEE 378 (602)
Q Consensus 305 ~~~~~~~~~~~~~~l~~~~~~---~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g--~~~n~-~d~~g~t~Lh~A~~~g~~~ 378 (602)
..+...++.+..+.+++.+.+ ..+..|.||||+|+..|+.+++++|++.| .+++. .|..|.||||+|+..|+.+
T Consensus 7 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~ 86 (228)
T 2dzn_A 7 HQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLE 86 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHH
T ss_pred HHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHH
Confidence 334444555555555554433 26788999999999999999999999999 55555 7889999999999999999
Q ss_pred HHHHHHhcc--cCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHh
Q 038432 379 CVLVLLKHA--SNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEK 454 (602)
Q Consensus 379 ~v~~Ll~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~ 454 (602)
++++|+++| ++++..+ ..|.||||+|+..|+.+++++|+++|++++. ..|.||||+|+.
T Consensus 87 ~~~~Ll~~g~~~~~~~~~-----------------~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~ 149 (228)
T 2dzn_A 87 VVKSLYDRPLKPDLNKIT-----------------NQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAAS 149 (228)
T ss_dssp HHHHHHSSSSCCCTTCCC-----------------TTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHH
T ss_pred HHHHHHhCCCCcccccCC-----------------cCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHH
Confidence 999999998 8888887 8899999999999999999999999999887 789999999999
Q ss_pred cCCHHHHHHHHHcC-CCCCCCCCCCcCHHHHHHHcCcHHHHHHHH-HCCCCcccCCCCCCChhhHHHHH
Q 038432 455 RNDMSVMEELVKYG-LNVDSKDRHGRTAIEIAMAENNVEMVNFLV-MNGSDVVGANKCEFSSTNLNDML 521 (602)
Q Consensus 455 ~~~~~~~~~Ll~~g-a~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll-~~ga~~~~~d~~g~t~l~~a~~~ 521 (602)
.|+.+++++|+++| +++|.+|..|+||||+|+..|+.+++++|+ ++|+|++.+|..|.||+|+|...
T Consensus 150 ~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~ 218 (228)
T 2dzn_A 150 VGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE 218 (228)
T ss_dssp TTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSST
T ss_pred cCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHH
Confidence 99999999999999 999999999999999999999999999999 88999999999999999999543
No 24
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=9.6e-37 Score=291.74 Aligned_cols=191 Identities=22% Similarity=0.262 Sum_probs=175.5
Q ss_pred CCCCCchhhhHhhhcCcHHHHHHHHhcCC----CCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhcc
Q 038432 327 GDPNMSVNLLTVASTGNAAFLDELLKARL----DPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNL 402 (602)
Q Consensus 327 ~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~----~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~ 402 (602)
.+.+|.||||+|+..|+.++++.|++.+. ++|.+|..|.||||+|+..|+.+++++|+++|++++..+
T Consensus 4 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-------- 75 (236)
T 1ikn_D 4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRD-------- 75 (236)
T ss_dssp ---CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCC--------
T ss_pred CCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcC--------
Confidence 56789999999999999999999998754 799999999999999999999999999999999999998
Q ss_pred chhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCC------CC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCC
Q 038432 403 SYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAIS------DP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSK 474 (602)
Q Consensus 403 ~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~------~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~ 474 (602)
..|.||||+|+..|+.+++++|+++|++. +. ..|.||||+|+..|+.+++++|+++|++++.+
T Consensus 76 ---------~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~ 146 (236)
T 1ikn_D 76 ---------FRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQ 146 (236)
T ss_dssp ---------TTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCC
T ss_pred ---------CCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCC
Confidence 89999999999999999999999999753 22 67999999999999999999999999999999
Q ss_pred CC-CCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHHHHHHHHhhhceeeecc
Q 038432 475 DR-HGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRITVHD 534 (602)
Q Consensus 475 d~-~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~~~~~l~~~~ 534 (602)
|. .|.||||+|+..|+.+++++|+++|+|++.+|..|.||+|+|+..++.++++.|+.++
T Consensus 147 ~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~g 207 (236)
T 1ikn_D 147 EPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLT 207 (236)
T ss_dssp CTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTS
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcc
Confidence 98 9999999999999999999999999999999999999999999999999999988877
No 25
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=1.9e-35 Score=302.11 Aligned_cols=231 Identities=13% Similarity=0.049 Sum_probs=182.2
Q ss_pred HHHHhhhhhhcccccccccccCCCC--CCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHH
Q 038432 302 NFLQQHKKLKDLNIGDLIAESGEED--GDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEEC 379 (602)
Q Consensus 302 ~ll~~~~~~~~~~~~~~l~~~~~~~--~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~ 379 (602)
..+..+...++.+..+.|++.+.+. .+..|.||||+|+..|+.+++++|++.|++++. .+|.||||+|+..|+.++
T Consensus 22 t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~g~t~L~~A~~~g~~~~ 99 (364)
T 3ljn_A 22 EKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL--WHGQKPIHLAVMANKTDL 99 (364)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC--BTTBCHHHHHHHTTCHHH
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc--cCCCCHHHHHHHcCCHHH
Confidence 3455566666667777776665433 566777777777777777777777777775443 467777777777777777
Q ss_pred HHHHHhc----ccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcC--ChhHHHHHHhcCCCCCC--CCcchhHHH
Q 038432 380 VLVLLKH----ASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSK--HHSIFRILYHCTAISDP--YTAGDLLCT 451 (602)
Q Consensus 380 v~~Ll~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~--~~~~~~~Ll~~g~~~~~--~~g~t~L~~ 451 (602)
+++|+++ |++++.............-..+..|..|.||||+|+..| +.+++++|+++|++++. ..|.||||+
T Consensus 100 v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~ 179 (364)
T 3ljn_A 100 VVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMR 179 (364)
T ss_dssp HHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHH
T ss_pred HHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHH
Confidence 7777777 555544000000000000000013478999999999999 99999999999999987 789999999
Q ss_pred HHhcCCHHHHHHHHHcCCC-----CCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHHHHHHHHhh
Q 038432 452 AEKRNDMSVMEELVKYGLN-----VDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREI 526 (602)
Q Consensus 452 A~~~~~~~~~~~Ll~~ga~-----~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~~ 526 (602)
|+..|+.+++++|+++|++ +|.+|..|+||||+|+..|+.++|++|+++|+|++.+|..|.||||+|+..++.++
T Consensus 180 A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~ 259 (364)
T 3ljn_A 180 AMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLL 259 (364)
T ss_dssp HHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTCCHHH
T ss_pred HHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHH
Confidence 9999999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred hceeeecc
Q 038432 527 GHRITVHD 534 (602)
Q Consensus 527 ~~~l~~~~ 534 (602)
++.|+.++
T Consensus 260 v~~Ll~~~ 267 (364)
T 3ljn_A 260 TKELLQKT 267 (364)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHcC
Confidence 99998875
No 26
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=100.00 E-value=5.9e-36 Score=290.03 Aligned_cols=198 Identities=21% Similarity=0.170 Sum_probs=175.9
Q ss_pred CchhhhHhhhcCcHH----HHHHHHhcCCCCCC----CCCCCchHHHHHHhc---CChHHHHHHHhcccCCCchhhHHHH
Q 038432 331 MSVNLLTVASTGNAA----FLDELLKARLDPDI----GDSKGRTPLHIAASK---GHEECVLVLLKHASNVHLRDYIIFM 399 (602)
Q Consensus 331 g~t~L~~A~~~g~~~----~~~~Ll~~g~~~n~----~d~~g~t~Lh~A~~~---g~~~~v~~Ll~~g~~~~~~~~~~~~ 399 (602)
|+||||.|+..|+.+ ++++|++.|+++|. .|..|+||||+|+.. |+.+++++|+++|++++..+...
T Consensus 2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~-- 79 (256)
T 2etb_A 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLV-- 79 (256)
T ss_dssp CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGG--
T ss_pred CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhc--
Confidence 789999999999997 66777789999998 899999999999999 99999999999999887432000
Q ss_pred hccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCCC--C-------------cchhHHHHHhcCCHHHHHHH
Q 038432 400 YNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPY--T-------------AGDLLCTAEKRNDMSVMEEL 464 (602)
Q Consensus 400 ~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~--~-------------g~t~L~~A~~~~~~~~~~~L 464 (602)
.. .....|..|.||||+|+..|+.+++++|+++|++++.. . |.||||+|+..|+.+++++|
T Consensus 80 -~~---~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~L 155 (256)
T 2etb_A 80 -NA---QCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYL 155 (256)
T ss_dssp -GC---CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHH
T ss_pred -cc---ccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHH
Confidence 00 00011367999999999999999999999999999882 2 99999999999999999999
Q ss_pred HH---cCCCCCCCCCCCcCHHHHHHH--cCcHH-------HHHHHHHCCCCc-------ccCCCCCCChhhHHHHHHHHh
Q 038432 465 VK---YGLNVDSKDRHGRTAIEIAMA--ENNVE-------MVNFLVMNGSDV-------VGANKCEFSSTNLNDMLQKRE 525 (602)
Q Consensus 465 l~---~ga~~n~~d~~g~TpLh~A~~--~~~~~-------iv~~Ll~~ga~~-------~~~d~~g~t~l~~a~~~~~~~ 525 (602)
++ +|+++|.+|.+|+||||+|+. .++.+ ++++|+++|+|+ +.+|..|.||||+|+..++.+
T Consensus 156 l~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~ 235 (256)
T 2etb_A 156 LENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIE 235 (256)
T ss_dssp HHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHH
T ss_pred HhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHH
Confidence 99 999999999999999999999 88888 999999999999 999999999999999999999
Q ss_pred hhceeeecc
Q 038432 526 IGHRITVHD 534 (602)
Q Consensus 526 ~~~~l~~~~ 534 (602)
+++.|+.++
T Consensus 236 ~v~~Ll~~g 244 (256)
T 2etb_A 236 IFRHILQRE 244 (256)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhCC
Confidence 999988776
No 27
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=3.3e-35 Score=279.41 Aligned_cols=190 Identities=21% Similarity=0.186 Sum_probs=173.3
Q ss_pred CchhhhHhhhcCcHHHHHHHHhcCCCCCC-CCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHH
Q 038432 331 MSVNLLTVASTGNAAFLDELLKARLDPDI-GDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIIL 409 (602)
Q Consensus 331 g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~-~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~ 409 (602)
|.||||.|+..|+.++++.|++.|.+++. .|..|.||||+|+..|+.+++++|+++|++++... .
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~--------------~ 67 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDD--------------Y 67 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGG--------------C
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccc--------------c
Confidence 68999999999999999999999887654 89999999999999999999999999995444321 0
Q ss_pred hhccCCcHHHHHHHcCChhHHHHHHhcC--CCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHH
Q 038432 410 LDMNGNTALWEAISSKHHSIFRILYHCT--AISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIA 485 (602)
Q Consensus 410 ~~~~g~tpLh~A~~~~~~~~~~~Ll~~g--~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A 485 (602)
.+..|.||||+|+..|+.+++++|+++| ++++. ..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|
T Consensus 68 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A 147 (228)
T 2dzn_A 68 PDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRA 147 (228)
T ss_dssp CCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHH
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHH
Confidence 1388999999999999999999999999 77665 7899999999999999999999999999999999999999999
Q ss_pred HHcCcHHHHHHHHHCC-CCcccCCCCCCChhhHHHHHHHHhhhceee-ecc
Q 038432 486 MAENNVEMVNFLVMNG-SDVVGANKCEFSSTNLNDMLQKREIGHRIT-VHD 534 (602)
Q Consensus 486 ~~~~~~~iv~~Ll~~g-a~~~~~d~~g~t~l~~a~~~~~~~~~~~l~-~~~ 534 (602)
+..|+.+++++|+++| ++++.+|..|.||||+|+..++.++++.|+ ..+
T Consensus 148 ~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~g 198 (228)
T 2dzn_A 148 ASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYG 198 (228)
T ss_dssp HHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcC
Confidence 9999999999999999 999999999999999999999999888887 544
No 28
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=1e-35 Score=289.44 Aligned_cols=191 Identities=16% Similarity=0.164 Sum_probs=153.7
Q ss_pred CCCCCchhhhHhhhcCcHHHHHHHHhcCCC--------CCCCCCCCchHHHHHHhcCCh-HHHHHHHhcccCCCchhhHH
Q 038432 327 GDPNMSVNLLTVASTGNAAFLDELLKARLD--------PDIGDSKGRTPLHIAASKGHE-ECVLVLLKHASNVHLRDYII 397 (602)
Q Consensus 327 ~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~--------~n~~d~~g~t~Lh~A~~~g~~-~~v~~Ll~~g~~~~~~~~~~ 397 (602)
++..+.+||+.||..|+.+++++|++.|++ ++..|..|.||||.|+..++. .++++|++.|+++|..|
T Consensus 7 kd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d--- 83 (269)
T 4b93_B 7 KDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTS--- 83 (269)
T ss_dssp CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCC---
T ss_pred cCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcC---
Confidence 456678999999999999999999998865 456788899999999988775 58899999999999998
Q ss_pred HHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCC
Q 038432 398 FMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKD 475 (602)
Q Consensus 398 ~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d 475 (602)
.+|.||||+|+..|+.+++++|++.|++++. ..|.||+|.|+..++.+++++|+++|+++|.+|
T Consensus 84 --------------~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d 149 (269)
T 4b93_B 84 --------------QDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKD 149 (269)
T ss_dssp --------------TTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCC
T ss_pred --------------CCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCC
Confidence 9999999999999999999999999999987 789999999999999999999999999999999
Q ss_pred CCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHHHHHHHHhhhceeeecc
Q 038432 476 RHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRITVHD 534 (602)
Q Consensus 476 ~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~~~~~l~~~~ 534 (602)
..|+||||+||..|+.++|++|+++|+|++.+|..|.||||+|+..++.++++.|+..+
T Consensus 150 ~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~G 208 (269)
T 4b93_B 150 LSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHG 208 (269)
T ss_dssp TTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999999999998888776
No 29
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.1e-34 Score=304.11 Aligned_cols=231 Identities=23% Similarity=0.287 Sum_probs=126.5
Q ss_pred HHhhhhhhcccccccccccCCCC--CCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHH
Q 038432 304 LQQHKKLKDLNIGDLIAESGEED--GDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVL 381 (602)
Q Consensus 304 l~~~~~~~~~~~~~~l~~~~~~~--~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~ 381 (602)
+..+...+..++.+.|++.+.+. .+..|.||||.|+..|+.+++++|++.|+++|.+|..|+||||+|+..|+.++|+
T Consensus 18 L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~ 97 (437)
T 1n11_A 18 LHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVK 97 (437)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHH
Confidence 33344444455555554444322 3444555555555555555555555555555555555555555555555555555
Q ss_pred HHHhcccCCCchh------hHHH---------------------------------HhccchhHHHHh----------hc
Q 038432 382 VLLKHASNVHLRD------YIIF---------------------------------MYNLSYDIIILL----------DM 412 (602)
Q Consensus 382 ~Ll~~g~~~~~~~------~~~~---------------------------------~~~~~~~~~~~~----------~~ 412 (602)
+|+++|++++..+ ...+ ...++.+++..+ +.
T Consensus 98 ~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~ 177 (437)
T 1n11_A 98 LLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGK 177 (437)
T ss_dssp HHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCS
T ss_pred HHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCC
Confidence 5555555555443 1222 222333333221 33
Q ss_pred cCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCc
Q 038432 413 NGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENN 490 (602)
Q Consensus 413 ~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~ 490 (602)
.|.||||+|+..|+.+++++|+++|++++. ..|.||||+|+..|+.+++++|+++|+++|..|..|.||||+|+..|+
T Consensus 178 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~ 257 (437)
T 1n11_A 178 NGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGH 257 (437)
T ss_dssp SCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCC
Confidence 455555555555555555555555555544 345566666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHCCCCcccCCCCCCChhhHHHHHHHHhhhceeeecc
Q 038432 491 VEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRITVHD 534 (602)
Q Consensus 491 ~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~~~~~l~~~~ 534 (602)
.+++++|+++|++++..|..|.||||+|+..++.++++.|..++
T Consensus 258 ~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g 301 (437)
T 1n11_A 258 AEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHG 301 (437)
T ss_dssp HHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCC
Confidence 66666666666666666666666666666666666666555543
No 30
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.7e-34 Score=302.59 Aligned_cols=211 Identities=20% Similarity=0.251 Sum_probs=174.1
Q ss_pred hhhhhhcccccccccccCCCC--CCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHH
Q 038432 306 QHKKLKDLNIGDLIAESGEED--GDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVL 383 (602)
Q Consensus 306 ~~~~~~~~~~~~~l~~~~~~~--~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~L 383 (602)
.+...++.++.+.|++.+.+. .+.+|.||||+|+..|+.++++.|++.|+++|..+..|.||||+|+..|+.+++++|
T Consensus 185 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~L 264 (437)
T 1n11_A 185 VAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALL 264 (437)
T ss_dssp HHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHH
Confidence 344445555666666655433 456778888888888888888888888888888888888888888888888888888
Q ss_pred HhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHH
Q 038432 384 LKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVM 461 (602)
Q Consensus 384 l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~ 461 (602)
+++|++++..+ ..|.||||+|+..|+.+++++|+++|++++. ..|.||||+|+..|+.+++
T Consensus 265 l~~~~~~~~~~-----------------~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v 327 (437)
T 1n11_A 265 LSKQANGNLGN-----------------KSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLV 327 (437)
T ss_dssp HTTTCCTTCCC-----------------TTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHH
T ss_pred HhcCCCCCCCC-----------------CCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHH
Confidence 88888888877 8888999999988999999999988888876 6788899999999999999
Q ss_pred HHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHHHHHHHHhhhceeeec
Q 038432 462 EELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRITVH 533 (602)
Q Consensus 462 ~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~~~~~l~~~ 533 (602)
++|+++|+++|.+|..|+||||+|+..|+.++|++|+++|+|++.+|.+|.||+++|+..++.++++.|...
T Consensus 328 ~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~ 399 (437)
T 1n11_A 328 KFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVV 399 (437)
T ss_dssp HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHhc
Confidence 999999999988888899999999999999999999999999988888999999998888887776666433
No 31
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=1e-34 Score=288.15 Aligned_cols=176 Identities=23% Similarity=0.244 Sum_probs=140.9
Q ss_pred CCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHH
Q 038432 328 DPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDII 407 (602)
Q Consensus 328 ~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~ 407 (602)
+.+|.||||.||..|+.++++.|++.|+++|..|..|.||||+||..|+.+++++|+++|++++..|
T Consensus 37 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~------------- 103 (299)
T 1s70_B 37 KFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPD------------- 103 (299)
T ss_dssp EECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCC-------------
T ss_pred ccCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCC-------------
Confidence 3456677777777777777777777777777777777777777777777777777777777777766
Q ss_pred HHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC---------------------------------------------
Q 038432 408 ILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--------------------------------------------- 442 (602)
Q Consensus 408 ~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--------------------------------------------- 442 (602)
..|.||||+|+..|+.+++++|+++|++++.
T Consensus 104 ----~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~ 179 (299)
T 1s70_B 104 ----NEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLR 179 (299)
T ss_dssp ----TTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred ----CCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHH
Confidence 6777777777777777777777777766543
Q ss_pred -----------------CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcc
Q 038432 443 -----------------YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVV 505 (602)
Q Consensus 443 -----------------~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~ 505 (602)
..|.||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|+|++
T Consensus 180 ~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~ 259 (299)
T 1s70_B 180 DARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDME 259 (299)
T ss_dssp HHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred HHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCC
Confidence 247788999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCChhhHHHH
Q 038432 506 GANKCEFSSTNLNDM 520 (602)
Q Consensus 506 ~~d~~g~t~l~~a~~ 520 (602)
.+|..|.||+|+|+.
T Consensus 260 ~~d~~g~t~l~~A~~ 274 (299)
T 1s70_B 260 AVNKVGQTAFDVADE 274 (299)
T ss_dssp CCCTTSCCTTTSCCS
T ss_pred CcCCCCCCHHHHHHH
Confidence 999999999999853
No 32
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=2.4e-34 Score=274.07 Aligned_cols=190 Identities=24% Similarity=0.209 Sum_probs=180.1
Q ss_pred CCCchhhhHhhhcCcHHHHHHHHhcCC-CCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHH
Q 038432 329 PNMSVNLLTVASTGNAAFLDELLKARL-DPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDII 407 (602)
Q Consensus 329 ~~g~t~L~~A~~~g~~~~~~~Ll~~g~-~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~ 407 (602)
..+.+|||.|+..|+.+.++.|++.+. .++..|..|.||||+|+..|+.+++++|+++|++++..|
T Consensus 4 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~------------- 70 (231)
T 3aji_A 4 CVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKD------------- 70 (231)
T ss_dssp CCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCC-------------
T ss_pred ccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcC-------------
Confidence 346799999999999999999998754 478889999999999999999999999999999999998
Q ss_pred HHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHH
Q 038432 408 ILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIA 485 (602)
Q Consensus 408 ~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A 485 (602)
..|.||||+|+..|+.+++++|+++|++++. ..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|
T Consensus 71 ----~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A 146 (231)
T 3aji_A 71 ----DAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRA 146 (231)
T ss_dssp ----TTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred ----CCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHH
Confidence 8999999999999999999999999999987 7799999999999999999999999999999999999999999
Q ss_pred HHcCcHHHHHHHHHCCCCcccCCCCCCChhhHHHHHHHHhhhceeeeccC
Q 038432 486 MAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRITVHDD 535 (602)
Q Consensus 486 ~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~~~~~l~~~~~ 535 (602)
+..|+.+++++|+++|++++.+|..|.||||+|+..++.++++.|+..+.
T Consensus 147 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga 196 (231)
T 3aji_A 147 AAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGA 196 (231)
T ss_dssp HHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred HHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999888887763
No 33
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=2.2e-34 Score=290.88 Aligned_cols=230 Identities=20% Similarity=0.236 Sum_probs=196.9
Q ss_pred HHHHhhhhhhcccccccccccCCCC--CC-CCCchhhhHhhhcCcHHHHHHHHhcCCCCC--------------------
Q 038432 302 NFLQQHKKLKDLNIGDLIAESGEED--GD-PNMSVNLLTVASTGNAAFLDELLKARLDPD-------------------- 358 (602)
Q Consensus 302 ~ll~~~~~~~~~~~~~~l~~~~~~~--~~-~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n-------------------- 358 (602)
+.+..+.+.++.++++.|++.++++ ++ ..|+||||+||..|+.+++++|+++|++++
T Consensus 27 t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~ 106 (337)
T 4g8k_A 27 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVK 106 (337)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred hHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccch
Confidence 4567788889999999999998766 33 358999999999999999999999887654
Q ss_pred -------------CCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcC
Q 038432 359 -------------IGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSK 425 (602)
Q Consensus 359 -------------~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~ 425 (602)
..|..|.||||+|+..|+.+++++|+++|++++..+ .........+..|.||||+|+..|
T Consensus 107 ~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~-------~~~~~~~~~~~~g~T~L~~A~~~g 179 (337)
T 4g8k_A 107 LLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRR-------KTKEDQERLRKGGATALMDAAEKG 179 (337)
T ss_dssp HHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCC-------CCC-----CTTCSCCHHHHHHHHT
T ss_pred hhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhh-------ccccccccccCCCCcHHHHHHHCC
Confidence 456778899999999999999999999999988654 111222334578999999999999
Q ss_pred ChhHHHHHHh-cCCCCCC--CCcchhHHHHHhcCC----HHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHH
Q 038432 426 HHSIFRILYH-CTAISDP--YTAGDLLCTAEKRND----MSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLV 498 (602)
Q Consensus 426 ~~~~~~~Ll~-~g~~~~~--~~g~t~L~~A~~~~~----~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll 498 (602)
+.+++++|++ .|++++. ..|.||+|.++..+. ..++++|+++|+++|.+|..|+||||+|+..|+.+++++|+
T Consensus 180 ~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll 259 (337)
T 4g8k_A 180 HVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLL 259 (337)
T ss_dssp CHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHH
Confidence 9999999996 5999987 788999998776544 46889999999999999999999999999999999999999
Q ss_pred HC-CCCcccCCCCCCChhhHHHHHHHHhhhceeeeccCCCc
Q 038432 499 MN-GSDVVGANKCEFSSTNLNDMLQKREIGHRITVHDDNST 538 (602)
Q Consensus 499 ~~-ga~~~~~d~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~ 538 (602)
+. |++++.+|.+|+||||+|+..++.++++.|+.++++..
T Consensus 260 ~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n 300 (337)
T 4g8k_A 260 EQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTD 300 (337)
T ss_dssp TSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSST
T ss_pred HhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence 85 89999999999999999999999999999998876544
No 34
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=2.7e-35 Score=301.40 Aligned_cols=237 Identities=18% Similarity=0.196 Sum_probs=204.6
Q ss_pred HHhhhhhhcccccccccccCCCCCC-CCCchhhhHhhhcCcHHHHHHHH--------hcCCCCCCCCCCCchHHHHHHhc
Q 038432 304 LQQHKKLKDLNIGDLIAESGEEDGD-PNMSVNLLTVASTGNAAFLDELL--------KARLDPDIGDSKGRTPLHIAASK 374 (602)
Q Consensus 304 l~~~~~~~~~~~~~~l~~~~~~~~~-~~g~t~L~~A~~~g~~~~~~~Ll--------~~g~~~n~~d~~g~t~Lh~A~~~ 374 (602)
+..+.. +...+.+.+.....+..+ ..|.||||+||..|+.++++.|+ +.|+++|.+|..|.||||+|+..
T Consensus 98 L~~Aa~-~~~~~~~~L~~~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~ 176 (373)
T 2fo1_E 98 LHTEAA-GSYAITEPITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLA 176 (373)
T ss_dssp HHHHHH-SSSCCCSCCSTTTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHH
T ss_pred HHHHhc-CCchHHHHhccccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHc
Confidence 344444 334666777665556666 68999999999999998877776 78999999999999999999999
Q ss_pred CChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcC---CCCCC--CCcchhH
Q 038432 375 GHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCT---AISDP--YTAGDLL 449 (602)
Q Consensus 375 g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g---~~~~~--~~g~t~L 449 (602)
|+.++|++|+++|++++..+ ..|.||||+|+..|+.+++++|+++| ++++. ..|.|||
T Consensus 177 g~~~iv~~Ll~~ga~~~~~~-----------------~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L 239 (373)
T 2fo1_E 177 RRRRLVAYLMKAGADPTIYN-----------------KSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTAL 239 (373)
T ss_dssp TCHHHHHHHHHTTCCSCCCC-----------------TTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHH
T ss_pred ChHHHHHHHHHCCCCCcccC-----------------CCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHH
Confidence 99999999999999999998 89999999999999999999999988 67776 7899999
Q ss_pred HHHHhcC---CHHHHHHHHHcCCCCCC--------CCCCCcCHHHHHHHcCcHHHHHHHHHCC-CCcccCCCCCCChhhH
Q 038432 450 CTAEKRN---DMSVMEELVKYGLNVDS--------KDRHGRTAIEIAMAENNVEMVNFLVMNG-SDVVGANKCEFSSTNL 517 (602)
Q Consensus 450 ~~A~~~~---~~~~~~~Ll~~ga~~n~--------~d~~g~TpLh~A~~~~~~~iv~~Ll~~g-a~~~~~d~~g~t~l~~ 517 (602)
|+|+..+ +.+++++|+++|++++. .|..|.||||+|+..|+.++|++|+++| ++++.+|..|.||||+
T Consensus 240 ~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~ 319 (373)
T 2fo1_E 240 MIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIML 319 (373)
T ss_dssp HHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHH
T ss_pred HHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHH
Confidence 9999998 89999999999999986 6779999999999999999999999875 9999999999999999
Q ss_pred HHHHHHHhhhceeeeccCCCchhHHHhhhhhhhhhhhhcCCCCCCcceeEEEecCCCc
Q 038432 518 NDMLQKREIGHRITVHDDNSTQNEVLLKKLEIIDFEAKEGKSKGGNCQRVSIYRGHPL 575 (602)
Q Consensus 518 a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 (602)
|+..++.++++.|+.++.+ .+ .....|.++.++++..||..
T Consensus 320 A~~~g~~~iv~~Ll~~gad-------------~~----~~d~~g~t~l~~A~~~g~~~ 360 (373)
T 2fo1_E 320 AAQEGRIEVVMYLIQQGAS-------------VE----AVDATDHTARQLAQANNHHN 360 (373)
T ss_dssp HHHHTCHHHHHHHHHTTCC-------------SS----CCCSSSCCHHHHHHHTTCHH
T ss_pred HHHcCCHHHHHHHHHcCCC-------------cc----CCCCCCCCHHHHHHHcCCHH
Confidence 9999999999988877632 21 22345667777777777653
No 35
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=2.1e-34 Score=275.89 Aligned_cols=214 Identities=20% Similarity=0.170 Sum_probs=193.2
Q ss_pred HHhhhhhhcccccccccccCCCC--CCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCC-CCCchHHHHHHhcCChHHH
Q 038432 304 LQQHKKLKDLNIGDLIAESGEED--GDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGD-SKGRTPLHIAASKGHEECV 380 (602)
Q Consensus 304 l~~~~~~~~~~~~~~l~~~~~~~--~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d-~~g~t~Lh~A~~~g~~~~v 380 (602)
+..+...++.+..+.+++.+.+. .+..|.||||.|+..|+.+++++|++.|++++..+ ..|.||||+|+..|+.+++
T Consensus 13 l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v 92 (240)
T 3eu9_A 13 IVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMV 92 (240)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHH
T ss_pred HHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHH
Confidence 33455666677777777766544 67789999999999999999999999999988665 4599999999999999999
Q ss_pred HHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCC-
Q 038432 381 LVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRND- 457 (602)
Q Consensus 381 ~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~- 457 (602)
++|+++|++++..+ ..|.||||+|+..|+.+++++|+++|++++. ..|.||||+|+..++
T Consensus 93 ~~Ll~~g~~~~~~~-----------------~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~ 155 (240)
T 3eu9_A 93 VQLMKYGADPSLID-----------------GEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHS 155 (240)
T ss_dssp HHHHHTTCCTTCCC-----------------TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCS
T ss_pred HHHHHcCCCCcccC-----------------CCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCh
Confidence 99999999999887 8999999999999999999999999999887 789999999997766
Q ss_pred HHHHHHHHHcCCCCCCCCC-CCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHHHHHHHHhhhceeeecc
Q 038432 458 MSVMEELVKYGLNVDSKDR-HGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRITVHD 534 (602)
Q Consensus 458 ~~~~~~Ll~~ga~~n~~d~-~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~~~~~l~~~~ 534 (602)
.+++++|++.|++++..+. .|.||||+|+..|+.+++++|+++|++++.+|..|.||+++|+..++.++++.|...+
T Consensus 156 ~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~ 233 (240)
T 3eu9_A 156 VDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEAR 233 (240)
T ss_dssp STTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC
T ss_pred HHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhh
Confidence 8999999999999999997 9999999999999999999999999999999999999999999999999999988776
No 36
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=3.8e-34 Score=256.99 Aligned_cols=154 Identities=23% Similarity=0.311 Sum_probs=147.6
Q ss_pred hHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--C
Q 038432 366 TPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--Y 443 (602)
Q Consensus 366 t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~ 443 (602)
++|+.||..|+.++|++|+++|+|+|.+| ..|.||||+|+..++.+++++|+++|++++. .
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d-----------------~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~ 68 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGADVNASD-----------------SDGRTPLHHAAENGHKEVVKLLISKGADVNAKDS 68 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCC-----------------TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCCCCcC-----------------CCCCCHHHHHHHcCCHHHHHHHHhcccchhhhcc
Confidence 57999999999999999999999999998 9999999999999999999999999999988 7
Q ss_pred CcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHHHHHHH
Q 038432 444 TAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQK 523 (602)
Q Consensus 444 ~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~ 523 (602)
.|+||||+|+..|+.+++++|+++|+|+|.+|.+|+||||+|+..|+.++|++|+++|+|++.+|.+|+||||+|+..++
T Consensus 69 ~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~ 148 (169)
T 4gpm_A 69 DGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGN 148 (169)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhceeeeccCC
Q 038432 524 REIGHRITVHDDN 536 (602)
Q Consensus 524 ~~~~~~l~~~~~~ 536 (602)
.++++.|+.++++
T Consensus 149 ~~iv~~Ll~~GA~ 161 (169)
T 4gpm_A 149 EEVVKLLEKQGGW 161 (169)
T ss_dssp HHHHHHHHTC---
T ss_pred HHHHHHHHHCCCC
Confidence 9999999988743
No 37
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=4.1e-35 Score=288.40 Aligned_cols=209 Identities=18% Similarity=0.176 Sum_probs=191.3
Q ss_pred HHHHhhhhhhcccccccccccCCCCCCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHH
Q 038432 302 NFLQQHKKLKDLNIGDLIAESGEEDGDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVL 381 (602)
Q Consensus 302 ~ll~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~ 381 (602)
+.+..+...+..+..+.|++.+++....+|.||||+|+..|+.+++++|++.|+++|.+|..|+||||+|+..|+.++++
T Consensus 33 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~ 112 (285)
T 3kea_A 33 SASYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVK 112 (285)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHH
Confidence 35666777888888899999888776668999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcccCCCchhhHHHHhccchhHHHHhhccC-CcHHHHHHHcCChhHHHHHHhcCCCCCCC-CcchhHHHHHhcCCHH
Q 038432 382 VLLKHASNVHLRDYIIFMYNLSYDIIILLDMNG-NTALWEAISSKHHSIFRILYHCTAISDPY-TAGDLLCTAEKRNDMS 459 (602)
Q Consensus 382 ~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g-~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~-~g~t~L~~A~~~~~~~ 459 (602)
+|+++|++++..+ ..| .||||+|+..|+.+++++|+++|++.... .|.||||+|+..|+.+
T Consensus 113 ~Ll~~ga~~~~~~-----------------~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~ 175 (285)
T 3kea_A 113 LFVKKNWRLMFYG-----------------KTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVD 175 (285)
T ss_dssp HHHHHCGGGGGCS-----------------SSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHH
T ss_pred HHHhcCCCCCccC-----------------CCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHH
Confidence 9999999999988 888 79999999999999999999999988664 9999999999999999
Q ss_pred HHHHHHHcCCCCCCCCCCCcCH-HHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHHHHHHHHhhhceeeecc
Q 038432 460 VMEELVKYGLNVDSKDRHGRTA-IEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRITVHD 534 (602)
Q Consensus 460 ~~~~Ll~~ga~~n~~d~~g~Tp-Lh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~~~~~l~~~~ 534 (602)
++++|+++|+++|.+|..|+|| ||+|+..|+.+++++|+++|+|++.+|. .|+..++.++++.|+.++
T Consensus 176 ~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~~-------~a~~~~~~~iv~~Ll~~g 244 (285)
T 3kea_A 176 MMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSANL-------ENVLLDDAEIAKMIIEKH 244 (285)
T ss_dssp HHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTTG-------GGGTTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCh-------hhhhcCCHHHHHHHHHcC
Confidence 9999999999999999999998 9999999999999999999999999984 445566777777776654
No 38
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=100.00 E-value=7.5e-35 Score=285.09 Aligned_cols=205 Identities=18% Similarity=0.166 Sum_probs=175.4
Q ss_pred CCCCCCCchhhhHhhhcCcHHHHHHHHh----cCCCCC----CCCCCCchHHHHHHhc---CChHHHHHHHhcccCCCch
Q 038432 325 EDGDPNMSVNLLTVASTGNAAFLDELLK----ARLDPD----IGDSKGRTPLHIAASK---GHEECVLVLLKHASNVHLR 393 (602)
Q Consensus 325 ~~~~~~g~t~L~~A~~~g~~~~~~~Ll~----~g~~~n----~~d~~g~t~Lh~A~~~---g~~~~v~~Ll~~g~~~~~~ 393 (602)
+..+..|.||||.|+..|+.++++.|++ .+++++ ..|..|+||||+|+.. |+.++|++|+++|++++..
T Consensus 7 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~ 86 (273)
T 2pnn_A 7 KPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSL 86 (273)
T ss_dssp ----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCH
T ss_pred CCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccch
Confidence 3467889999999999999999888886 566666 4588999999999987 9999999999999875432
Q ss_pred hhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCCC----------------CcchhHHHHHhcCC
Q 038432 394 DYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPY----------------TAGDLLCTAEKRND 457 (602)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~----------------~g~t~L~~A~~~~~ 457 (602)
... .... ....|..|.||||+|+..|+.+++++|+++|++++.. .|.||||+|+..|+
T Consensus 87 ~~~---i~~~---~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~ 160 (273)
T 2pnn_A 87 KQF---VNAS---YTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQ 160 (273)
T ss_dssp HHH---HTCC---CCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTC
T ss_pred hHH---hhcc---cccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCC
Confidence 100 0000 0002368999999999999999999999999999882 59999999999999
Q ss_pred HHHHHHHHH---cCCCCCCCCCCCcCHHHHHHHcCc---------HHHHHHHHHCCCCcc-------cCCCCCCChhhHH
Q 038432 458 MSVMEELVK---YGLNVDSKDRHGRTAIEIAMAENN---------VEMVNFLVMNGSDVV-------GANKCEFSSTNLN 518 (602)
Q Consensus 458 ~~~~~~Ll~---~ga~~n~~d~~g~TpLh~A~~~~~---------~~iv~~Ll~~ga~~~-------~~d~~g~t~l~~a 518 (602)
.+++++|++ +|+++|.+|.+|+||||+|+..|+ .+++++|+++|++++ .+|..|.||||+|
T Consensus 161 ~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A 240 (273)
T 2pnn_A 161 LAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALA 240 (273)
T ss_dssp HHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHH
T ss_pred HHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHH
Confidence 999999999 999999999999999999999998 899999999999997 5999999999999
Q ss_pred HHHHHHhhhceeeeccC
Q 038432 519 DMLQKREIGHRITVHDD 535 (602)
Q Consensus 519 ~~~~~~~~~~~l~~~~~ 535 (602)
+..++.++++.|+.+++
T Consensus 241 ~~~g~~~iv~~Ll~~ga 257 (273)
T 2pnn_A 241 ASSGKIGVLAYILQREI 257 (273)
T ss_dssp HHTTCHHHHHHHHHHHT
T ss_pred HHhChHHHHHHHHHCCC
Confidence 99999999999988774
No 39
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=1.8e-33 Score=285.64 Aligned_cols=217 Identities=24% Similarity=0.227 Sum_probs=189.6
Q ss_pred HHHhhhhhhcccccccccccCCCC--CCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHH
Q 038432 303 FLQQHKKLKDLNIGDLIAESGEED--GDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECV 380 (602)
Q Consensus 303 ll~~~~~~~~~~~~~~l~~~~~~~--~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v 380 (602)
.+..+...+..++.+.|++.+.+. .+..|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..|+.+++
T Consensus 61 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v 140 (351)
T 3utm_A 61 PLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVC 140 (351)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHH
Confidence 455566677788888888887655 778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccCCCchhh---------------------------HHHHhccchhHHH----------HhhccCCcHHHHHHH
Q 038432 381 LVLLKHASNVHLRDY---------------------------IIFMYNLSYDIII----------LLDMNGNTALWEAIS 423 (602)
Q Consensus 381 ~~Ll~~g~~~~~~~~---------------------------~~~~~~~~~~~~~----------~~~~~g~tpLh~A~~ 423 (602)
++|+++|++++..+. .......+.+.+. ..+..|.||||+|+.
T Consensus 141 ~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~ 220 (351)
T 3utm_A 141 SLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVA 220 (351)
T ss_dssp HHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHH
T ss_pred HHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHH
Confidence 999999999987651 0111111111111 125678999999999
Q ss_pred c---CChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHH
Q 038432 424 S---KHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLV 498 (602)
Q Consensus 424 ~---~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll 498 (602)
. +..+++++|+++|++++. ..|.||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+
T Consensus 221 ~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll 300 (351)
T 3utm_A 221 SLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLL 300 (351)
T ss_dssp CCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred HhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHH
Confidence 9 558999999999999987 78999999999999999999999999999999999999999999999999999999
Q ss_pred HCCCCcccCCCCCCChhhHHH
Q 038432 499 MNGSDVVGANKCEFSSTNLND 519 (602)
Q Consensus 499 ~~ga~~~~~d~~g~t~l~~a~ 519 (602)
++|+|++.+|..|.||+++|.
T Consensus 301 ~~gad~~~~~~~g~tal~~a~ 321 (351)
T 3utm_A 301 SYGSDPSIISLQGFTAAQMGN 321 (351)
T ss_dssp HTTCCTTCCCTTSCCHHHHSC
T ss_pred HcCCCCCCcCCCCCChhhhhh
Confidence 999999999999999999983
No 40
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=1.1e-34 Score=296.29 Aligned_cols=192 Identities=17% Similarity=0.196 Sum_probs=179.5
Q ss_pred CCCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchh
Q 038432 326 DGDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYD 405 (602)
Q Consensus 326 ~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~ 405 (602)
..+.+|.||||+||..|+.+++++|++.|+++|.+|..|.||||+||..|+.++|++|+++|++++.
T Consensus 15 ~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~------------- 81 (364)
T 3ljn_A 15 KSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL------------- 81 (364)
T ss_dssp -CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC-------------
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc-------------
Confidence 3577899999999999999999999999999999999999999999999999999999999997764
Q ss_pred HHHHhhccCCcHHHHHHHcCChhHHHHHHhc----CCCCCC-------------------CCcchhHHHHHhcC--CHHH
Q 038432 406 IIILLDMNGNTALWEAISSKHHSIFRILYHC----TAISDP-------------------YTAGDLLCTAEKRN--DMSV 460 (602)
Q Consensus 406 ~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~----g~~~~~-------------------~~g~t~L~~A~~~~--~~~~ 460 (602)
..|.||||+|+..|+.+++++|+++ |++++. ..|.||||+|+..| +.++
T Consensus 82 ------~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~ 155 (364)
T 3ljn_A 82 ------WHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEM 155 (364)
T ss_dssp ------BTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHH
T ss_pred ------cCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHH
Confidence 4699999999999999999999998 665542 46899999999999 9999
Q ss_pred HHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCC-----cccCCCCCCChhhHHHHHHHHhhhceeeeccC
Q 038432 461 MEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSD-----VVGANKCEFSSTNLNDMLQKREIGHRITVHDD 535 (602)
Q Consensus 461 ~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~-----~~~~d~~g~t~l~~a~~~~~~~~~~~l~~~~~ 535 (602)
+++|+++|+++|.+|..|.||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..++.++++.|+.++.
T Consensus 156 v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga 235 (364)
T 3ljn_A 156 IKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGI 235 (364)
T ss_dssp HHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTC
T ss_pred HHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999999 99999999999999999999999999988764
Q ss_pred C
Q 038432 536 N 536 (602)
Q Consensus 536 ~ 536 (602)
+
T Consensus 236 d 236 (364)
T 3ljn_A 236 D 236 (364)
T ss_dssp C
T ss_pred C
Confidence 3
No 41
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=8.6e-34 Score=286.57 Aligned_cols=206 Identities=21% Similarity=0.272 Sum_probs=178.6
Q ss_pred CCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCC-CCchHHHHHHhcCChHHHHHHHhcccCCCchhh------HHHHh
Q 038432 328 DPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDS-KGRTPLHIAASKGHEECVLVLLKHASNVHLRDY------IIFMY 400 (602)
Q Consensus 328 ~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~-~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~------~~~~~ 400 (602)
+.+|.|+||.|++.|++++|++|+++|+|+|.++. .|+||||+||..|+.++|++|+++|++++..+. .....
T Consensus 22 ~~~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~ 101 (337)
T 4g8k_A 22 AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAI 101 (337)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred CCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHh
Confidence 34578999999999999999999999999999875 599999999999999999999999999988761 11111
Q ss_pred ccchhH----------HHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC------------CCcchhHHHHHhcCCH
Q 038432 401 NLSYDI----------IILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP------------YTAGDLLCTAEKRNDM 458 (602)
Q Consensus 401 ~~~~~~----------~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~------------~~g~t~L~~A~~~~~~ 458 (602)
...... ++..|..|.||||+|+..|+.+++++|+++|++++. ..|.||||+|+..|+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~ 181 (337)
T 4g8k_A 102 AGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHV 181 (337)
T ss_dssp HTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCH
T ss_pred cccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCH
Confidence 111111 234578899999999999999999999999998864 3588999999999999
Q ss_pred HHHHHHHH-cCCCCCCCCCCCcCHHHHHHHcCc----HHHHHHHHHCCCCcccCCCCCCChhhHHHHHHHHhhhceeeec
Q 038432 459 SVMEELVK-YGLNVDSKDRHGRTAIEIAMAENN----VEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRITVH 533 (602)
Q Consensus 459 ~~~~~Ll~-~ga~~n~~d~~g~TpLh~A~~~~~----~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~~~~~l~~~ 533 (602)
+++++|++ .|+++|.+|..|.||||.++..++ ..++++|+++|+|++.+|..|.||||+|+..++.++++.|...
T Consensus 182 ~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~ 261 (337)
T 4g8k_A 182 EVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ 261 (337)
T ss_dssp HHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTS
T ss_pred HHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHh
Confidence 99999996 699999999999999999886544 4689999999999999999999999999999999988887764
No 42
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=100.00 E-value=2.4e-34 Score=279.41 Aligned_cols=200 Identities=21% Similarity=0.172 Sum_probs=172.9
Q ss_pred CCCchhhhHhhhcCcHHHHHHHH----hcCCCCCCCC----CCCchHHHHHH---hcCChHHHHHHHhcccCCCchhhHH
Q 038432 329 PNMSVNLLTVASTGNAAFLDELL----KARLDPDIGD----SKGRTPLHIAA---SKGHEECVLVLLKHASNVHLRDYII 397 (602)
Q Consensus 329 ~~g~t~L~~A~~~g~~~~~~~Ll----~~g~~~n~~d----~~g~t~Lh~A~---~~g~~~~v~~Ll~~g~~~~~~~~~~ 397 (602)
..|+++||.|++.|+.+.++.|+ +.|++++..+ ..|.||||+|+ ..|+.+++++|++.|++++......
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~ 82 (260)
T 3jxi_A 3 VFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFI 82 (260)
T ss_dssp CCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHH
T ss_pred cchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhh
Confidence 45789999999999999555544 5899999765 77999999999 7799999999999997754432000
Q ss_pred HHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCCC----------------CcchhHHHHHhcCCHHHH
Q 038432 398 FMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPY----------------TAGDLLCTAEKRNDMSVM 461 (602)
Q Consensus 398 ~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~----------------~g~t~L~~A~~~~~~~~~ 461 (602)
. ..+...|..|.||||+|+..|+.+++++|+++|++++.. .|.||||+|+..|+.+++
T Consensus 83 ---~---~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v 156 (260)
T 3jxi_A 83 ---N---SPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIV 156 (260)
T ss_dssp ---T---CCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHH
T ss_pred ---c---ccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHH
Confidence 0 000011358999999999999999999999999999884 499999999999999999
Q ss_pred HHHHH---cCCCCCCCCCCCcCHHHHHHHcCc---------HHHHHHHHHCCCCc-------ccCCCCCCChhhHHHHHH
Q 038432 462 EELVK---YGLNVDSKDRHGRTAIEIAMAENN---------VEMVNFLVMNGSDV-------VGANKCEFSSTNLNDMLQ 522 (602)
Q Consensus 462 ~~Ll~---~ga~~n~~d~~g~TpLh~A~~~~~---------~~iv~~Ll~~ga~~-------~~~d~~g~t~l~~a~~~~ 522 (602)
++|++ +|+++|.+|..|+||||+|+..++ .+++++|+++|+++ +.+|..|.||||+|+..+
T Consensus 157 ~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g 236 (260)
T 3jxi_A 157 HYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTG 236 (260)
T ss_dssp HHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTT
T ss_pred HHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcC
Confidence 99999 999999999999999999998887 79999999999999 789999999999999999
Q ss_pred HHhhhceeeecc
Q 038432 523 KREIGHRITVHD 534 (602)
Q Consensus 523 ~~~~~~~l~~~~ 534 (602)
+.++++.|+.++
T Consensus 237 ~~~~v~~Ll~~g 248 (260)
T 3jxi_A 237 KIGIFQHIIRRE 248 (260)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHhC
Confidence 999999988776
No 43
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=9.3e-34 Score=270.98 Aligned_cols=208 Identities=19% Similarity=0.197 Sum_probs=182.4
Q ss_pred HHHhhhhhhcccccccccccCC------CCCCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCC
Q 038432 303 FLQQHKKLKDLNIGDLIAESGE------EDGDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGH 376 (602)
Q Consensus 303 ll~~~~~~~~~~~~~~l~~~~~------~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~ 376 (602)
.+..+...+..+..+.+++.+. +..+..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+
T Consensus 11 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 90 (236)
T 1ikn_D 11 FLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGC 90 (236)
T ss_dssp TTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTC
T ss_pred hhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCC
Confidence 3556677788888888887653 4477889999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--C-CcchhHHHHH
Q 038432 377 EECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--Y-TAGDLLCTAE 453 (602)
Q Consensus 377 ~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~-~g~t~L~~A~ 453 (602)
.+++++|+++|++++... .++..+..|.||||+|+..|+.+++++|+++|++++. . .|.||||+|+
T Consensus 91 ~~~v~~Ll~~~~~~~~~~-----------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~ 159 (236)
T 1ikn_D 91 LASVGVLTQSCTTPHLHS-----------ILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAV 159 (236)
T ss_dssp HHHHHHHHHSTTTTSSSC-----------GGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHH
T ss_pred HHHHHHHHhcccchhHHH-----------HhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHH
Confidence 999999999998753221 1122247899999999999999999999999999987 3 8999999999
Q ss_pred hcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcc--cCCCCCCChhhHHHHH
Q 038432 454 KRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVV--GANKCEFSSTNLNDML 521 (602)
Q Consensus 454 ~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~--~~d~~g~t~l~~a~~~ 521 (602)
..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++.. ..+..|.||.+.+...
T Consensus 160 ~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~ 229 (236)
T 1ikn_D 160 DLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEF 229 (236)
T ss_dssp HTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCCCC---
T ss_pred HcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhhhcCCccchHHHHhhhccc
Confidence 9999999999999999999999999999999999999999999999999886 8899999999887543
No 44
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=3.6e-33 Score=274.65 Aligned_cols=229 Identities=21% Similarity=0.279 Sum_probs=151.3
Q ss_pred CCchhhhHhhhcCcHHHHHHHHhcCCCCCCC-CCCCchHHHHHHhcCChHHHHHHHhcccCCCchh------hHHHHhcc
Q 038432 330 NMSVNLLTVASTGNAAFLDELLKARLDPDIG-DSKGRTPLHIAASKGHEECVLVLLKHASNVHLRD------YIIFMYNL 402 (602)
Q Consensus 330 ~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~-d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~------~~~~~~~~ 402 (602)
+|.||||.|+..|+.+++++|++.|++++.. +..|.||||+|+..|+.+++++|+++|++++..+ ...+...+
T Consensus 4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 83 (285)
T 1wdy_A 4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAG 83 (285)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred ccchHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcC
Confidence 5789999999999999999999999999988 8889999999999999999999999999999876 22233334
Q ss_pred chhHHHHh----------hccCCcHHHHHHHcCChhHHHHHHhcCCCCCC------------CCcchhHHHHHhcCCHHH
Q 038432 403 SYDIIILL----------DMNGNTALWEAISSKHHSIFRILYHCTAISDP------------YTAGDLLCTAEKRNDMSV 460 (602)
Q Consensus 403 ~~~~~~~~----------~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~------------~~g~t~L~~A~~~~~~~~ 460 (602)
+.+++..+ |..|.||||+|+..|+.+++++|+++|++++. ..|.||||.|+..|+.++
T Consensus 84 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~ 163 (285)
T 1wdy_A 84 SVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEV 163 (285)
T ss_dssp CHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHH
T ss_pred CHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHH
Confidence 44443322 44455666666666666666666666555542 235556666666666666
Q ss_pred HHHHHHc-CCCCCCCCCCCcCHHHHHHHcCc----HHHHHHHHHCCCCcccCCCCCCChhhHHHHHHHHhhhceeeeccC
Q 038432 461 MEELVKY-GLNVDSKDRHGRTAIEIAMAENN----VEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRITVHDD 535 (602)
Q Consensus 461 ~~~Ll~~-ga~~n~~d~~g~TpLh~A~~~~~----~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~~~~~l~~~~~ 535 (602)
+++|+++ |++++.+|..|.||||+|+..++ .+++++|+++|++++.+|..|.||||+|+..++.++++.|+..
T Consensus 164 v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-- 241 (285)
T 1wdy_A 164 LKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ-- 241 (285)
T ss_dssp HHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHS--
T ss_pred HHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhc--
Confidence 6666654 66666666666666666666555 5566666666666666666666666666666555555555441
Q ss_pred CCchhHHHhhhhhhhhhhhhcCCCCCCcceeEEEecCCC
Q 038432 536 NSTQNEVLLKKLEIIDFEAKEGKSKGGNCQRVSIYRGHP 574 (602)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (602)
.+.........|.++.+.++..|+.
T Consensus 242 --------------~g~~~~~~~~~g~t~l~~A~~~~~~ 266 (285)
T 1wdy_A 242 --------------EHIEINDTDSDGKTALLLAVELKLK 266 (285)
T ss_dssp --------------SSCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred --------------cCCCccccCCCCCcHHHHHHHcCcH
Confidence 1111222334556666666666654
No 45
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=100.00 E-value=4.7e-33 Score=252.20 Aligned_cols=167 Identities=21% Similarity=0.242 Sum_probs=154.2
Q ss_pred CchhhhHhhhcCcHHHHHHHHhcCCC-CCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHH
Q 038432 331 MSVNLLTVASTGNAAFLDELLKARLD-PDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIIL 409 (602)
Q Consensus 331 g~t~L~~A~~~g~~~~~~~Ll~~g~~-~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~ 409 (602)
+.||||.|+..|+.++++.|++.|.+ ++.+|..|+||||+|+..|+.+++++|+++|++++..+
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~--------------- 66 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILA--------------- 66 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCC---------------
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhc---------------
Confidence 46899999999999999999999877 89999999999999999999999999999999999998
Q ss_pred hhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHH
Q 038432 410 LDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMA 487 (602)
Q Consensus 410 ~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~ 487 (602)
..|.||||+|+..|+.+++++|+++|++++. ..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.
T Consensus 67 --~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~ 144 (172)
T 3v30_A 67 --KERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVA 144 (172)
T ss_dssp --TTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred --ccCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHH
Confidence 8999999999999999999999999999987 789999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHCCCCcccCCCCCCCh
Q 038432 488 ENNVEMVNFLVMNGSDVVGANKCEFSS 514 (602)
Q Consensus 488 ~~~~~iv~~Ll~~ga~~~~~d~~g~t~ 514 (602)
.|+.+++++|+++|+++..++..|.||
T Consensus 145 ~~~~~~~~~L~~~~~~~~~~~~~~~~p 171 (172)
T 3v30_A 145 LGYRKVQQVIENHILKLFQSNLVPADP 171 (172)
T ss_dssp HTCHHHHHHHHHHHHHHSCC-------
T ss_pred hCcHHHHHHHHHHHHHHhcccCCCCCC
Confidence 999999999999999999999999988
No 46
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=2e-32 Score=262.15 Aligned_cols=192 Identities=18% Similarity=0.114 Sum_probs=180.9
Q ss_pred CCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhH
Q 038432 327 GDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDI 406 (602)
Q Consensus 327 ~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~ 406 (602)
.+..|.|||+.|+..|+.+++++|++.|++++..|..|.||||+|+..|+.+++++|+++|++++..+
T Consensus 5 ~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~------------ 72 (240)
T 3eu9_A 5 IDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLG------------ 72 (240)
T ss_dssp CSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCB------------
T ss_pred cccccchHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhc------------
Confidence 46678999999999999999999999999999999999999999999999999999999999998765
Q ss_pred HHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHH
Q 038432 407 IILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEI 484 (602)
Q Consensus 407 ~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~ 484 (602)
+..|.||||+|+..|+.+++++|+++|++++. ..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+
T Consensus 73 ----~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~ 148 (240)
T 3eu9_A 73 ----GDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMW 148 (240)
T ss_dssp ----TTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred ----CCcCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHH
Confidence 35699999999999999999999999999987 788999999999999999999999999999999999999999
Q ss_pred HHHcCc-HHHHHHHHHCCCCcccCCC-CCCChhhHHHHHHHHhhhceeeecc
Q 038432 485 AMAENN-VEMVNFLVMNGSDVVGANK-CEFSSTNLNDMLQKREIGHRITVHD 534 (602)
Q Consensus 485 A~~~~~-~~iv~~Ll~~ga~~~~~d~-~g~t~l~~a~~~~~~~~~~~l~~~~ 534 (602)
|+..++ .+++++|++.|++++..+. .|.||||+|+..++.++++.|+.++
T Consensus 149 a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 200 (240)
T 3eu9_A 149 AAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAG 200 (240)
T ss_dssp HHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcC
Confidence 997766 8999999999999999998 9999999999999999888887765
No 47
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=100.00 E-value=1.9e-33 Score=275.09 Aligned_cols=186 Identities=17% Similarity=0.189 Sum_probs=176.6
Q ss_pred chhhhHhhhcCcHHHHHHHHhcCCC--CCCCCCCCchHHHHHHhcCChHHHHHHHhccc-CCCchhhHHHHhccchhHHH
Q 038432 332 SVNLLTVASTGNAAFLDELLKARLD--PDIGDSKGRTPLHIAASKGHEECVLVLLKHAS-NVHLRDYIIFMYNLSYDIII 408 (602)
Q Consensus 332 ~t~L~~A~~~g~~~~~~~Ll~~g~~--~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~-~~~~~~~~~~~~~~~~~~~~ 408 (602)
.+++|.|+..|+.+.++.+++.+.+ +|.+|.+|+||||+||..|+.++|++|++.|+ +++..+
T Consensus 77 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~-------------- 142 (276)
T 4hbd_A 77 RSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQN-------------- 142 (276)
T ss_dssp STTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCC--------------
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCC--------------
Confidence 5789999999999999999988766 89999999999999999999999999999998 999988
Q ss_pred HhhccCCcHHHHHH-----HcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCH
Q 038432 409 LLDMNGNTALWEAI-----SSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTA 481 (602)
Q Consensus 409 ~~~~~g~tpLh~A~-----~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~Tp 481 (602)
..|.||||+|+ ..++.+++++|++.|++.+. ..|.||||+|+..|+.+++++|+++|+|+|.+|.+|+||
T Consensus 143 ---~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~Tp 219 (276)
T 4hbd_A 143 ---RAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTA 219 (276)
T ss_dssp ---TTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred ---CCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCH
Confidence 99999999999 66899999999999988876 679999999999999999999999999999999999999
Q ss_pred HHHHHHcCcHHHHHHHHH-CCCCcccCCCCCCChhhHHHHHHHHhhhceeeecc
Q 038432 482 IEIAMAENNVEMVNFLVM-NGSDVVGANKCEFSSTNLNDMLQKREIGHRITVHD 534 (602)
Q Consensus 482 Lh~A~~~~~~~iv~~Ll~-~ga~~~~~d~~g~t~l~~a~~~~~~~~~~~l~~~~ 534 (602)
||+|+..|+.+++++|++ .|+|++.+|.+|.||||+|+..++.++++.|+.+.
T Consensus 220 Lh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 220 LMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRM 273 (276)
T ss_dssp HHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred HHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 999999999999999999 89999999999999999999999999999887664
No 48
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.98 E-value=5.2e-33 Score=279.00 Aligned_cols=183 Identities=19% Similarity=0.193 Sum_probs=158.5
Q ss_pred cccccccccCCCC---CCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCC---hHHHHHHHhcc
Q 038432 314 NIGDLIAESGEED---GDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGH---EECVLVLLKHA 387 (602)
Q Consensus 314 ~~~~~l~~~~~~~---~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~---~~~v~~Ll~~g 387 (602)
.+.+.+.+.+.+. ++.+|.||||+||..|+.+++++|++.|+++|.+|..|+||||+|+..|+ .++++.|++.+
T Consensus 111 ~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~ 190 (327)
T 1sw6_A 111 EVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYL 190 (327)
T ss_dssp HHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhh
Confidence 4455566666543 67899999999999999999999999999999999999999999999999 79999999986
Q ss_pred -cCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHH----cCChhHHHHHHhc--------------------CCCCCC
Q 038432 388 -SNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAIS----SKHHSIFRILYHC--------------------TAISDP 442 (602)
Q Consensus 388 -~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~----~~~~~~~~~Ll~~--------------------g~~~~~ 442 (602)
++++..| ..|+||||+|+. .|+.+++++|++. |++++.
T Consensus 191 ~~~~~~~d-----------------~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~ 253 (327)
T 1sw6_A 191 YPCLILED-----------------SMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPND 253 (327)
T ss_dssp GGGGGEEC-----------------TTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------
T ss_pred hccccCCC-----------------CCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCccc
Confidence 7888887 999999999999 8999999999987 777776
Q ss_pred --CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHHHH
Q 038432 443 --YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDM 520 (602)
Q Consensus 443 --~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~ 520 (602)
..|.||||.|+. +++|+++ ++|.+|..|+||||+|+..|+.++|++|+++|||++.+|..|+||||+|+.
T Consensus 254 ~~~~g~t~L~~a~~------~~~Ll~~--~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~ 325 (327)
T 1sw6_A 254 KNGERKDSILENLD------LKWIIAN--MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAG 325 (327)
T ss_dssp ------CHHHHHCS------HHHHHHH--TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTCC
T ss_pred ccccCCChhHHHHH------HHHHHHh--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHh
Confidence 789999999996 8999998 689999999999999999999999999999999999999999999999975
Q ss_pred H
Q 038432 521 L 521 (602)
Q Consensus 521 ~ 521 (602)
.
T Consensus 326 ~ 326 (327)
T 1sw6_A 326 L 326 (327)
T ss_dssp -
T ss_pred c
Confidence 4
No 49
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.98 E-value=3.7e-32 Score=243.62 Aligned_cols=156 Identities=24% Similarity=0.306 Sum_probs=148.3
Q ss_pred CCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHH
Q 038432 330 NMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIIL 409 (602)
Q Consensus 330 ~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~ 409 (602)
...||||.|+..|+.++++.|++.|+++|.+|..|+||||+|+. |+.+++++|+++|++++..+
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~--------------- 67 (162)
T 1ihb_A 4 PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKD--------------- 67 (162)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCC---------------
T ss_pred hHhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCC---------------
Confidence 45799999999999999999999999999999999999999999 99999999999999999998
Q ss_pred hhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCC-CCCCCCCCcCHHHHHH
Q 038432 410 LDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLN-VDSKDRHGRTAIEIAM 486 (602)
Q Consensus 410 ~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~-~n~~d~~g~TpLh~A~ 486 (602)
..|.||||+|+..|+.+++++|+++|++++. ..|.||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+
T Consensus 68 --~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~ 145 (162)
T 1ihb_A 68 --RTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLAR 145 (162)
T ss_dssp --TTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHH
T ss_pred --CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHH
Confidence 8999999999999999999999999999887 7899999999999999999999999998 6999999999999999
Q ss_pred HcCcHHHHHHHHHCCCC
Q 038432 487 AENNVEMVNFLVMNGSD 503 (602)
Q Consensus 487 ~~~~~~iv~~Ll~~ga~ 503 (602)
..|+.+++++|+++|||
T Consensus 146 ~~~~~~~~~~Ll~~GAd 162 (162)
T 1ihb_A 146 LYGRNEVVSLMQANGAG 162 (162)
T ss_dssp HTTCHHHHHHHHHTC--
T ss_pred HcCCHHHHHHHHHhCCC
Confidence 99999999999999986
No 50
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.98 E-value=5.4e-32 Score=243.88 Aligned_cols=159 Identities=20% Similarity=0.266 Sum_probs=147.7
Q ss_pred CCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHH
Q 038432 330 NMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIIL 409 (602)
Q Consensus 330 ~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~ 409 (602)
.|.||||.|+..|+.++++.|++.|+++|.+|..|.||||+|+..|+.+++++|+++|++++..+
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~--------------- 66 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG--------------- 66 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC---------------
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcC---------------
Confidence 57899999999999999999999999999999999999999999999999999999999999887
Q ss_pred hhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHH
Q 038432 410 LDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMA 487 (602)
Q Consensus 410 ~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~ 487 (602)
..|.||||+|+..|+.+++++|+++|++++. ..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.
T Consensus 67 --~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~ 144 (167)
T 3v31_A 67 --KGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVA 144 (167)
T ss_dssp --TTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred --CCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence 8999999999999999999999999998887 678999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHCCCCcc
Q 038432 488 ENNVEMVNFLVMNGSDVV 505 (602)
Q Consensus 488 ~~~~~iv~~Ll~~ga~~~ 505 (602)
.|+.+++++|+++++++.
T Consensus 145 ~~~~~~~~~L~~~~~~~~ 162 (167)
T 3v31_A 145 LGYRSVQQVIESHLLKLL 162 (167)
T ss_dssp HTCHHHHHHHHHHHHHHC
T ss_pred cCcHHHHHHHHHHHHHHH
Confidence 999999999998877654
No 51
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.98 E-value=1.2e-31 Score=242.05 Aligned_cols=158 Identities=29% Similarity=0.389 Sum_probs=145.5
Q ss_pred CCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhH
Q 038432 327 GDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDI 406 (602)
Q Consensus 327 ~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~ 406 (602)
..+.+.++|+.||+.|+.+++++|++.|+++|.+|..|.||||+|+..|+.+++++|+++|++++..|
T Consensus 10 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~------------ 77 (169)
T 2y1l_E 10 HGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVD------------ 77 (169)
T ss_dssp ---CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC------------
T ss_pred CCCcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccC------------
Confidence 34567899999999999999999999999999999999999999999999999999999999999987
Q ss_pred HHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHH
Q 038432 407 IILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEI 484 (602)
Q Consensus 407 ~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~ 484 (602)
..|.||||+|+..|+.+++++|+++|++++. ..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+
T Consensus 78 -----~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~ 152 (169)
T 2y1l_E 78 -----HAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDI 152 (169)
T ss_dssp -----TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred -----CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHH
Confidence 8999999999999999999999999998887 678999999999999999999999999999999999999999
Q ss_pred HHHcCcHHHHHHHHHCC
Q 038432 485 AMAENNVEMVNFLVMNG 501 (602)
Q Consensus 485 A~~~~~~~iv~~Ll~~g 501 (602)
|+..|+.+++++|+++|
T Consensus 153 A~~~~~~~~~~~L~~~G 169 (169)
T 2y1l_E 153 SIDNGNEDLAEILQKLN 169 (169)
T ss_dssp HHHTTCHHHHHHHHTC-
T ss_pred HHHhCCHHHHHHHHHcC
Confidence 99999999999999876
No 52
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.98 E-value=4.8e-32 Score=250.27 Aligned_cols=158 Identities=21% Similarity=0.251 Sum_probs=85.1
Q ss_pred CCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcC
Q 038432 358 DIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCT 437 (602)
Q Consensus 358 n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g 437 (602)
|.+|..|+||||+||..|+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|+++|
T Consensus 29 n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-----------------~~g~t~L~~A~~~~~~~~v~~Ll~~g 91 (192)
T 2rfm_A 29 NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKD-----------------IEGSTALIWAVKNNRLGIAEKLLSKG 91 (192)
T ss_dssp TCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCC-----------------TTSCCHHHHHHHTTCHHHHHHHHHHT
T ss_pred hCcCCCCCCHHHHHHHcCCHHHHHHHHHhcccccccc-----------------ccCccHHHHHHHcCCHHHHHHHHHCC
Confidence 3445555555555555555555555555555555444 45555555555555555555555555
Q ss_pred CCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChh
Q 038432 438 AISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSST 515 (602)
Q Consensus 438 ~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l 515 (602)
++++. ..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||+
T Consensus 92 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l 171 (192)
T 2rfm_A 92 SNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAE 171 (192)
T ss_dssp CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHH
T ss_pred CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHH
Confidence 55444 3455555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred hHHHHHHHHhhhceeee
Q 038432 516 NLNDMLQKREIGHRITV 532 (602)
Q Consensus 516 ~~a~~~~~~~~~~~l~~ 532 (602)
|+|+..++.++++.|..
T Consensus 172 ~~A~~~~~~~~v~~Ll~ 188 (192)
T 2rfm_A 172 ASARIFGRQEVIKIFTE 188 (192)
T ss_dssp HHHHHTTCHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHh
Confidence 55555555555555443
No 53
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.97 E-value=3.7e-32 Score=250.99 Aligned_cols=161 Identities=20% Similarity=0.197 Sum_probs=155.5
Q ss_pred CCCCCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccc
Q 038432 324 EEDGDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLS 403 (602)
Q Consensus 324 ~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~ 403 (602)
.+.++..|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..|+.+++++|+++|++++..|
T Consensus 28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~--------- 98 (192)
T 2rfm_A 28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKD--------- 98 (192)
T ss_dssp HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCC---------
T ss_pred HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCC---------
Confidence 45578899999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCH
Q 038432 404 YDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTA 481 (602)
Q Consensus 404 ~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~Tp 481 (602)
..|.||||+|+..|+.+++++|+++|++++. ..|.||||+|+..|+.+++++|+++|++++.+|..|.||
T Consensus 99 --------~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~ 170 (192)
T 2rfm_A 99 --------FSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTA 170 (192)
T ss_dssp --------TTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBH
T ss_pred --------CCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCH
Confidence 8999999999999999999999999999987 789999999999999999999999999999999999999
Q ss_pred HHHHHHcCcHHHHHHHHHCC
Q 038432 482 IEIAMAENNVEMVNFLVMNG 501 (602)
Q Consensus 482 Lh~A~~~~~~~iv~~Ll~~g 501 (602)
||+|+..|+.+++++|+++|
T Consensus 171 l~~A~~~~~~~~v~~Ll~~~ 190 (192)
T 2rfm_A 171 EASARIFGRQEVIKIFTEVR 190 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhCcHHHHHHHHhcc
Confidence 99999999999999999875
No 54
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.97 E-value=4.4e-32 Score=258.57 Aligned_cols=202 Identities=19% Similarity=0.113 Sum_probs=167.8
Q ss_pred HHhhhhhhccccccccccc-CC--CCCCCCCchhhhHhhhcCcHHHHHHHHhcCCCC-----CCCCCCCchHHHHHHhcC
Q 038432 304 LQQHKKLKDLNIGDLIAES-GE--EDGDPNMSVNLLTVASTGNAAFLDELLKARLDP-----DIGDSKGRTPLHIAASKG 375 (602)
Q Consensus 304 l~~~~~~~~~~~~~~l~~~-~~--~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~-----n~~d~~g~t~Lh~A~~~g 375 (602)
+..+...++.+..+.+++. +. +.++.+|.||||+|+..|+.+++++|++.|+++ +..|..|.||||+|+..|
T Consensus 7 L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~ 86 (232)
T 2rfa_A 7 LLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQ 86 (232)
T ss_dssp HHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHHHcC
Confidence 4455666666767666665 44 347888999999999999999999999999886 777889999999999999
Q ss_pred ChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHH
Q 038432 376 HEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAE 453 (602)
Q Consensus 376 ~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~ 453 (602)
+.+++++|+++|++++..+..... ....+..|..|.||||+|+..|+.+++++|+++|++++. ..|.||||+|+
T Consensus 87 ~~~~v~~Ll~~g~~~~~~~~~~~~----~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~ 162 (232)
T 2rfa_A 87 NVNLVRALLARGASVSARATGSVF----HYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILI 162 (232)
T ss_dssp CHHHHHHHHHTTCCTTCCCCSGGG----SCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred CHHHHHHHHhCCCCCCcccCCcce----eecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence 999999999999999987600000 000011124799999999999999999999999999987 78999999999
Q ss_pred hcCCHHHH----HHHHHcCCCC------CCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCC
Q 038432 454 KRNDMSVM----EELVKYGLNV------DSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANK 509 (602)
Q Consensus 454 ~~~~~~~~----~~Ll~~ga~~------n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~ 509 (602)
..|+.+++ ++|+++|+++ +.+|..|+||||+|+..|+.+++++|+++|++......
T Consensus 163 ~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~~~~~~~~ 228 (232)
T 2rfa_A 163 LQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHIAAAHH 228 (232)
T ss_dssp TCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHC-----
T ss_pred HcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcCccchhhhc
Confidence 99999988 9999999998 58999999999999999999999999999988765543
No 55
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.97 E-value=2.5e-31 Score=251.64 Aligned_cols=185 Identities=20% Similarity=0.165 Sum_probs=169.8
Q ss_pred HHhhhhhhcccccccccccCCCC--CCCCCchhhhHhhhcCcHHHHHHHHhcCC-CCCCCCCCCchHHHHHHhcCChHHH
Q 038432 304 LQQHKKLKDLNIGDLIAESGEED--GDPNMSVNLLTVASTGNAAFLDELLKARL-DPDIGDSKGRTPLHIAASKGHEECV 380 (602)
Q Consensus 304 l~~~~~~~~~~~~~~l~~~~~~~--~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~-~~n~~d~~g~t~Lh~A~~~g~~~~v 380 (602)
+..+...++.+..+.|++.+.+. .+..|.||||+|+..|+.+++++|++.+. +++..+..|.||||+|+..|+.+++
T Consensus 29 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~ 108 (223)
T 2f8y_A 29 LHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGML 108 (223)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHH
Confidence 34455556666666666666443 67889999999999999999999999987 8999999999999999999999999
Q ss_pred HHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCH
Q 038432 381 LVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDM 458 (602)
Q Consensus 381 ~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~ 458 (602)
++|+++|++++..+ ..|.||||+|+..|+.+++++|+++|++++. ..|.||||+|+..|+.
T Consensus 109 ~~Ll~~g~~~~~~~-----------------~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 171 (223)
T 2f8y_A 109 EDLINSHADVNAVD-----------------DLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSY 171 (223)
T ss_dssp HHHHHTTCCTTCBC-----------------TTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred HHHHHcCCCCcCcC-----------------CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCH
Confidence 99999999999998 8999999999999999999999999999987 7899999999999999
Q ss_pred HHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcc
Q 038432 459 SVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVV 505 (602)
Q Consensus 459 ~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~ 505 (602)
+++++|+++|++++.+|..|.||||+|+..++.+++++|+++|+...
T Consensus 172 ~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~~ 218 (223)
T 2f8y_A 172 ETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRS 218 (223)
T ss_dssp HHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSSC
T ss_pred HHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHHcCCCcc
Confidence 99999999999999999999999999999999999999999999764
No 56
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.97 E-value=2.8e-31 Score=246.96 Aligned_cols=178 Identities=18% Similarity=0.211 Sum_probs=160.3
Q ss_pred hhhhhcccccccccccCC---CCCCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHH
Q 038432 307 HKKLKDLNIGDLIAESGE---EDGDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVL 383 (602)
Q Consensus 307 ~~~~~~~~~~~~l~~~~~---~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~L 383 (602)
+...++.+..+.++..+. +..+.+|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|
T Consensus 12 A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L 91 (201)
T 3hra_A 12 AANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYM 91 (201)
T ss_dssp HHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence 344444444444444432 34678899999999999999999999999999999999999999999999999999999
Q ss_pred H-hcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcC-CCCCC--CCcchhHHHHHhcCC--
Q 038432 384 L-KHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCT-AISDP--YTAGDLLCTAEKRND-- 457 (602)
Q Consensus 384 l-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g-~~~~~--~~g~t~L~~A~~~~~-- 457 (602)
+ ..+++++..+ ..|.||||+|+..|+.+++++|+++| ++++. ..|.||||+|+..++
T Consensus 92 l~~~~~~~~~~~-----------------~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~ 154 (201)
T 3hra_A 92 LKHATPDLNKHN-----------------RYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGN 154 (201)
T ss_dssp HHHSCCCTTCCC-----------------TTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCS
T ss_pred HhccCccccccc-----------------CCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccch
Confidence 9 5677999888 89999999999999999999999999 88876 789999999999998
Q ss_pred ---HHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCC
Q 038432 458 ---MSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNG 501 (602)
Q Consensus 458 ---~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~g 501 (602)
.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|
T Consensus 155 ~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 155 QLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN 201 (201)
T ss_dssp HHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred hhHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence 99999999999999999999999999999999999999999987
No 57
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.97 E-value=3.7e-34 Score=271.53 Aligned_cols=185 Identities=19% Similarity=0.093 Sum_probs=172.5
Q ss_pred CCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhH
Q 038432 327 GDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDI 406 (602)
Q Consensus 327 ~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~ 406 (602)
.+.+|.||||.|+..|+.++++.|++.|+++|.+|..|+||||+||..|+.+++++|+++|+++|..|
T Consensus 17 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d------------ 84 (229)
T 2vge_A 17 ARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPD------------ 84 (229)
T ss_dssp TTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC------------
T ss_pred cccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCC------------
Confidence 45678899999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC---CCcchhHHHH--HhcCCHHHHHHHHHcCCCCCCCCCCCcCH
Q 038432 407 IILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP---YTAGDLLCTA--EKRNDMSVMEELVKYGLNVDSKDRHGRTA 481 (602)
Q Consensus 407 ~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~---~~g~t~L~~A--~~~~~~~~~~~Ll~~ga~~n~~d~~g~Tp 481 (602)
..|.||||+|+..|+.+++++|+++|++++. ..|.||||+| +..|+.+++++|+++|++++.+|..|.||
T Consensus 85 -----~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~ 159 (229)
T 2vge_A 85 -----SHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYA 159 (229)
T ss_dssp -----TTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEE
T ss_pred -----CCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHH
Confidence 8999999999999999999999999999987 4899999999 99999999999999999999999999999
Q ss_pred HHHHHHcCcHHHHHHHHHCCCC--cccCCCCCCChhhHHHHHHHHhhhceee
Q 038432 482 IEIAMAENNVEMVNFLVMNGSD--VVGANKCEFSSTNLNDMLQKREIGHRIT 531 (602)
Q Consensus 482 Lh~A~~~~~~~iv~~Ll~~ga~--~~~~d~~g~t~l~~a~~~~~~~~~~~l~ 531 (602)
+|.++..+. .++|++.|++ ++.+|.+|+||||+|+..|+.++++...
T Consensus 160 l~~~~~~~~---~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~~ 208 (229)
T 2vge_A 160 LWDYSAEFG---DELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNY 208 (229)
T ss_dssp SSCBCCSST---TBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEGGG
T ss_pred HHHHhhccc---cccCccccccccccccCCCcccHHHHHHHcCCcceeehhh
Confidence 997665543 3688899999 7889999999999999999999887643
No 58
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.97 E-value=4.1e-32 Score=265.60 Aligned_cols=213 Identities=15% Similarity=0.139 Sum_probs=164.7
Q ss_pred HHHHHhhhhhhccccccccccc----CCCC------CCCCCchhhhHhhhc---CcHHHHHHHHhcCCCC-------CC-
Q 038432 301 KNFLQQHKKLKDLNIGDLIAES----GEED------GDPNMSVNLLTVAST---GNAAFLDELLKARLDP-------DI- 359 (602)
Q Consensus 301 ~~ll~~~~~~~~~~~~~~l~~~----~~~~------~~~~g~t~L~~A~~~---g~~~~~~~Ll~~g~~~-------n~- 359 (602)
...+..+...++.+..+.|++. +.+. .+..|.||||+|+.. |+.+++++|++.|+++ |.
T Consensus 14 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~ 93 (273)
T 2pnn_A 14 RRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNAS 93 (273)
T ss_dssp HHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCC
T ss_pred chHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcc
Confidence 3456667777888888877753 3322 377899999999976 9999999999988653 22
Q ss_pred ---CCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHh-
Q 038432 360 ---GDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYH- 435 (602)
Q Consensus 360 ---~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~- 435 (602)
.|..|.||||+|+..|+.++|++|+++|++++..+........ .....+..|.||||+|+..|+.+++++|++
T Consensus 94 ~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~---~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~ 170 (273)
T 2pnn_A 94 YTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKT---KGRPGFYFGELPLSLAACTNQLAIVKFLLQN 170 (273)
T ss_dssp CCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSC---SSSCCCCSCBSHHHHHHHTTCHHHHHHHHHC
T ss_pred cccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccc---cccccccCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 5679999999999999999999999999999998700000000 000001179999999999999999999999
Q ss_pred --cCCCCCC--CCcchhHHHHHhcCC---------HHHHHHHHHcCCCCC-------CCCCCCcCHHHHHHHcCcHHHHH
Q 038432 436 --CTAISDP--YTAGDLLCTAEKRND---------MSVMEELVKYGLNVD-------SKDRHGRTAIEIAMAENNVEMVN 495 (602)
Q Consensus 436 --~g~~~~~--~~g~t~L~~A~~~~~---------~~~~~~Ll~~ga~~n-------~~d~~g~TpLh~A~~~~~~~iv~ 495 (602)
+|++++. ..|+||||+|+..|+ .+++++|+++|+++| .+|..|+||||+|+..|+.++++
T Consensus 171 ~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~ 250 (273)
T 2pnn_A 171 SWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLA 250 (273)
T ss_dssp SSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred ccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHH
Confidence 9999987 789999999999998 899999999999997 48999999999999999999999
Q ss_pred HHHHCCC-CcccCCCCCCChhh
Q 038432 496 FLVMNGS-DVVGANKCEFSSTN 516 (602)
Q Consensus 496 ~Ll~~ga-~~~~~d~~g~t~l~ 516 (602)
+|+++|| |+......+.+|-+
T Consensus 251 ~Ll~~ga~dp~~~~~~~~~~~~ 272 (273)
T 2pnn_A 251 YILQREIHEPECRHAAAHHHHH 272 (273)
T ss_dssp HHHHHHTC--------------
T ss_pred HHHHCCCCCchhhhhhhhhccC
Confidence 9999999 89888888877643
No 59
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.97 E-value=1.4e-31 Score=244.04 Aligned_cols=166 Identities=22% Similarity=0.235 Sum_probs=155.6
Q ss_pred CCCchhhhHhhhcCcHHHHHHHHhc-CCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHH
Q 038432 329 PNMSVNLLTVASTGNAAFLDELLKA-RLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDII 407 (602)
Q Consensus 329 ~~g~t~L~~A~~~g~~~~~~~Ll~~-g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~ 407 (602)
+++.++||.||..|+.++++.|++. +.+++..|..|+||||+||..|+.+++++|+++|++++..+
T Consensus 3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~------------- 69 (179)
T 3f6q_A 3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMN------------- 69 (179)
T ss_dssp ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcC-------------
Confidence 5678999999999999999999997 67899999999999999999999999999999999999998
Q ss_pred HHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHH
Q 038432 408 ILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIA 485 (602)
Q Consensus 408 ~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A 485 (602)
..|.||||+|+..|+.+++++|+++|++++. ..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|
T Consensus 70 ----~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A 145 (179)
T 3f6q_A 70 ----RGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKA 145 (179)
T ss_dssp ----TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGS
T ss_pred ----CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHH
Confidence 8999999999999999999999999999987 7899999999999999999999999999999999999999999
Q ss_pred HHcCcHHHHHHHHHCCCCcccCCCCC
Q 038432 486 MAENNVEMVNFLVMNGSDVVGANKCE 511 (602)
Q Consensus 486 ~~~~~~~iv~~Ll~~ga~~~~~d~~g 511 (602)
+..++.+++++|+++|++++..+..+
T Consensus 146 ~~~~~~~~~~~L~~~g~~~~~~~~~~ 171 (179)
T 3f6q_A 146 KAPLRELLRERAEKMGQNLNRIPYKD 171 (179)
T ss_dssp CHHHHHHHHHHHHHTTCCCSCBCCCC
T ss_pred HHHHHHHHHHHHHHhhcCcccCCccc
Confidence 99999999999999999999877665
No 60
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=99.97 E-value=6.4e-30 Score=236.99 Aligned_cols=194 Identities=16% Similarity=0.324 Sum_probs=180.9
Q ss_pred hhhHhHHHHhhhHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcchhHHHHhhCCHHHHHHHHHHhhHhhhhhhccccc
Q 038432 111 EGTRRTMEFRNSIEAASNFVGRNRLPPRLKKQILAYMCLRFKAESLNQHQLIEQLPKSICKSICQHLFLHTVEKVYLFKD 190 (602)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~m~~~~l~~~l~~ri~~y~~~~~~~~~~~~~~~l~~lp~~l~~~v~~~~~~~~l~~~~~f~~ 190 (602)
+.+++..+|++++..+++||+.+++|++|+.||++|++|.|+.+..+++++++.||++||.++..+.+.++++++|+|++
T Consensus 2 ~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~~~~~e~~il~~l~~~Lr~~i~~~~~~~~l~~~~~f~~ 81 (198)
T 2ptm_A 2 AMDSSSRQYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYRGKMFDERHIFREVSESIRQDVANYNCRDLVASVPFFVG 81 (198)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTCCCCSHHHHHHSCHHHHHHHHHHHTHHHHHHCGGGTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcccCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCcchhc
Confidence 46778999999999999999999999999999999999999877788999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEeccCceeEEEEeCCCCeeehhhhhcCCCceeEEE
Q 038432 191 VSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFGEVGALCCRPQIYTYR 270 (602)
Q Consensus 191 ~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~fGe~~ll~~~~~~~tv~ 270 (602)
+|++++..++..++.+.|.||++|+++|+.++.+|||.+|.|+++..++ + .+..+++|++||+.+++.+.+++.+++
T Consensus 82 l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~~~g-~--~~~~l~~G~~fGe~~~~~~~~~~~~~~ 158 (198)
T 2ptm_A 82 ADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIMSDG-V--IATSLSDGSYFGEICLLTRERRVASVK 158 (198)
T ss_dssp CCHHHHHHHHHHCEEEEECTTCEEECTTSCCSEEEEEEECCEEEECTTS-C--EEEEECTTCEESCHHHHHSSCCSSEEE
T ss_pred CCHHHHHHHHHhccceeeCCCCEEEECCCcCcEEEEEEeCEEEEEecCC-e--EEEEecCCCEechHHHcCCCccceEEE
Confidence 9999999999999999999999999999999999999999999997332 2 788999999999999999999999999
Q ss_pred EcceeEEEEeeHHHHHHHHHhChHHHHHHHHHHHHhh
Q 038432 271 TKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQH 307 (602)
Q Consensus 271 a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~ll~~~ 307 (602)
|.++|+++.+++++|.+++..+|+....+.+.+..+.
T Consensus 159 a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~~~~rl 195 (198)
T 2ptm_A 159 CETYCTLFSLSVQHFNQVLDEFPAMRKTMEEIAVRRL 195 (198)
T ss_dssp ESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHTCC
T ss_pred EeeEEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHH
Confidence 9999999999999999999999999888777665543
No 61
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.97 E-value=6.1e-31 Score=236.96 Aligned_cols=155 Identities=20% Similarity=0.244 Sum_probs=149.5
Q ss_pred CCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC
Q 038432 363 KGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP 442 (602)
Q Consensus 363 ~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~ 442 (602)
.|.||||.|+..|+.+++++|++.|++++..| ..|.||||+|+..|+.+++++|+++|++++.
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~-----------------~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~ 64 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTD-----------------EEGFTPLMWAAAHGQIAVVEFLLQNGADPQL 64 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCC-----------------TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCC-----------------CCCCCHHHHHHHCCCHHHHHHHHHcCCCCCC
Confidence 58999999999999999999999999999998 8999999999999999999999999999986
Q ss_pred --CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHHHH
Q 038432 443 --YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDM 520 (602)
Q Consensus 443 --~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~ 520 (602)
..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+|++.+|..|.||+|+|+.
T Consensus 65 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~ 144 (167)
T 3v31_A 65 LGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVA 144 (167)
T ss_dssp CCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence 788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhceeeecc
Q 038432 521 LQKREIGHRITVHD 534 (602)
Q Consensus 521 ~~~~~~~~~l~~~~ 534 (602)
.++.++++.|..+.
T Consensus 145 ~~~~~~~~~L~~~~ 158 (167)
T 3v31_A 145 LGYRSVQQVIESHL 158 (167)
T ss_dssp HTCHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHH
Confidence 99999988887664
No 62
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.97 E-value=9.7e-31 Score=236.13 Aligned_cols=156 Identities=23% Similarity=0.278 Sum_probs=148.4
Q ss_pred CCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCC
Q 038432 361 DSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAIS 440 (602)
Q Consensus 361 d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~ 440 (602)
...+.||||.||..|+.+++++|+++|++++..| ..|.||||+|+..|+.+++++|+++|+++
T Consensus 11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~-----------------~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~ 73 (169)
T 2y1l_E 11 GSDLGKKLLEAARAGRDDEVRILMANGADVNAED-----------------ASGWTPLHLAAFNGHLEIVEVLLKNGADV 73 (169)
T ss_dssp --CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCC-----------------TTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred CCcccchHHHHHHcCCHHHHHHHHHCCCCCCCCC-----------------CCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 4567899999999999999999999999999998 89999999999999999999999999998
Q ss_pred CC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHH
Q 038432 441 DP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLN 518 (602)
Q Consensus 441 ~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a 518 (602)
+. ..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+|++.+|..|.||+|+|
T Consensus 74 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A 153 (169)
T 2y1l_E 74 NAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDIS 153 (169)
T ss_dssp TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHH
Confidence 87 7799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhceeeec
Q 038432 519 DMLQKREIGHRITVH 533 (602)
Q Consensus 519 ~~~~~~~~~~~l~~~ 533 (602)
+..++.++++.|...
T Consensus 154 ~~~~~~~~~~~L~~~ 168 (169)
T 2y1l_E 154 IDNGNEDLAEILQKL 168 (169)
T ss_dssp HHTTCHHHHHHHHTC
T ss_pred HHhCCHHHHHHHHHc
Confidence 999999998887654
No 63
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.97 E-value=1.8e-30 Score=230.23 Aligned_cols=148 Identities=28% Similarity=0.349 Sum_probs=94.0
Q ss_pred chhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhh
Q 038432 332 SVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLD 411 (602)
Q Consensus 332 ~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~ 411 (602)
.++||.|+..|+.+++++|++.|++++ .|..|.||||+|+..|+.+++++|+++|++++..+
T Consensus 3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~----------------- 64 (153)
T 1awc_B 3 GKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDART----------------- 64 (153)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCC-----------------
T ss_pred cHHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCC-----------------
Confidence 466777777777777777777766655 46667777777777777777777777777776665
Q ss_pred ccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcC
Q 038432 412 MNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAEN 489 (602)
Q Consensus 412 ~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~ 489 (602)
..|.||||+|+..|+.+++++|+++|++++. ..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|
T Consensus 65 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~ 144 (153)
T 1awc_B 65 KVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNG 144 (153)
T ss_dssp TTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred CCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcC
Confidence 6666666666666666666666666655554 44555555555555555555555555555555555555555555555
Q ss_pred cHHHHHHH
Q 038432 490 NVEMVNFL 497 (602)
Q Consensus 490 ~~~iv~~L 497 (602)
+.+++++|
T Consensus 145 ~~~i~~~L 152 (153)
T 1awc_B 145 NEDLAEIL 152 (153)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHh
Confidence 55555554
No 64
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.97 E-value=2.1e-31 Score=257.91 Aligned_cols=185 Identities=19% Similarity=0.213 Sum_probs=161.9
Q ss_pred HHhhhhhhccccccccc----ccCCCC------CCCCCchhhhHhhhc---CcHHHHHHHHhcCCCCCCC----------
Q 038432 304 LQQHKKLKDLNIGDLIA----ESGEED------GDPNMSVNLLTVAST---GNAAFLDELLKARLDPDIG---------- 360 (602)
Q Consensus 304 l~~~~~~~~~~~~~~l~----~~~~~~------~~~~g~t~L~~A~~~---g~~~~~~~Ll~~g~~~n~~---------- 360 (602)
+..+...++.+..+.++ +.+.+. .+.+|.||||+|+.. |+.+++++|++.|++++..
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~ 85 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTD 85 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccccccc
Confidence 44455555555443333 344432 477899999999999 9999999999998887643
Q ss_pred -CCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhhcc-------------CCcHHHHHHHcCC
Q 038432 361 -DSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMN-------------GNTALWEAISSKH 426 (602)
Q Consensus 361 -d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-------------g~tpLh~A~~~~~ 426 (602)
|..|.||||+|+..|+.+++++|+++|++++..+ .. |.||||+|+..|+
T Consensus 86 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~-----------------~~~~~~~~~~~~~~~g~tpL~~A~~~~~ 148 (256)
T 2etb_A 86 EFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRA-----------------CGRFFQKHQGTCFYFGELPLSLAACTKQ 148 (256)
T ss_dssp TTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-----------------CSGGGSCCSSSCCCSCSSHHHHHHHTTC
T ss_pred ccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCccc-----------------ccccccccccccccCCCCHHHHHHHcCC
Confidence 4789999999999999999999999999999987 44 9999999999999
Q ss_pred hhHHHHHHh---cCCCCCC--CCcchhHHHHHh--cCCHH-------HHHHHHHcCCCC-------CCCCCCCcCHHHHH
Q 038432 427 HSIFRILYH---CTAISDP--YTAGDLLCTAEK--RNDMS-------VMEELVKYGLNV-------DSKDRHGRTAIEIA 485 (602)
Q Consensus 427 ~~~~~~Ll~---~g~~~~~--~~g~t~L~~A~~--~~~~~-------~~~~Ll~~ga~~-------n~~d~~g~TpLh~A 485 (602)
.+++++|++ +|++++. ..|+||||+|+. .++.+ ++++|+++|+++ +.+|..|+||||+|
T Consensus 149 ~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A 228 (256)
T 2etb_A 149 WDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLA 228 (256)
T ss_dssp HHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHH
T ss_pred HHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHH
Confidence 999999999 9999987 789999999999 88888 999999999999 99999999999999
Q ss_pred HHcCcHHHHHHHHHCCCCcc
Q 038432 486 MAENNVEMVNFLVMNGSDVV 505 (602)
Q Consensus 486 ~~~~~~~iv~~Ll~~ga~~~ 505 (602)
+..|+.+++++|+++|++..
T Consensus 229 ~~~g~~~~v~~Ll~~g~~~~ 248 (256)
T 2etb_A 229 AKEGKIEIFRHILQREFSGA 248 (256)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHhCCCCCC
Confidence 99999999999999998764
No 65
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.97 E-value=7.2e-31 Score=236.00 Aligned_cols=157 Identities=22% Similarity=0.320 Sum_probs=134.6
Q ss_pred CCCCchhhhHhhhcCcHHHHHHHHh-cCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhH
Q 038432 328 DPNMSVNLLTVASTGNAAFLDELLK-ARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDI 406 (602)
Q Consensus 328 ~~~g~t~L~~A~~~g~~~~~~~Ll~-~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~ 406 (602)
+.+|.||||.|+..|+.++++.|++ .+.+++..+..|.||||+|+..|+.+++++|+++|++++..|
T Consensus 5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~------------ 72 (165)
T 3twr_A 5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKD------------ 72 (165)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC------------
T ss_pred cchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccC------------
Confidence 5667899999999999999999988 466788888889999999999999999999999999999887
Q ss_pred HHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHH
Q 038432 407 IILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEI 484 (602)
Q Consensus 407 ~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~ 484 (602)
..|.||||+|+..|+.+++++|+++|++++. ..|.||||+|+..|+.+++++|+++|++++.+|.+|.||||+
T Consensus 73 -----~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~ 147 (165)
T 3twr_A 73 -----KGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL 147 (165)
T ss_dssp -----TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGG
T ss_pred -----CCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHh
Confidence 8899999999999999999999888888876 678888888888888888888888888888888888888888
Q ss_pred HHHcCcHHHHHHHHHCCC
Q 038432 485 AMAENNVEMVNFLVMNGS 502 (602)
Q Consensus 485 A~~~~~~~iv~~Ll~~ga 502 (602)
|+. ++.+++++|+++||
T Consensus 148 a~~-~~~~i~~~L~~~gA 164 (165)
T 3twr_A 148 VKD-GDTDIQDLLRGDAA 164 (165)
T ss_dssp SCT-TCHHHHHHHHTC--
T ss_pred Hhc-CChHHHHHHhhccc
Confidence 766 88888888888876
No 66
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.97 E-value=2e-30 Score=229.88 Aligned_cols=149 Identities=23% Similarity=0.256 Sum_probs=142.4
Q ss_pred CchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC-
Q 038432 364 GRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP- 442 (602)
Q Consensus 364 g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~- 442 (602)
+.||||.|+..|+.+++++|+++|++++. + ..|.||||+|+..|+.+++++|+++|++++.
T Consensus 2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~-~-----------------~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~ 63 (153)
T 1awc_B 2 LGKKLLEAARAGQDDEVRILMANGAPFTT-D-----------------WLGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR 63 (153)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTCCCCC-C-----------------TTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCC
T ss_pred ccHHHHHHHHcCCHHHHHHHHHcCCCCCc-C-----------------CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCC
Confidence 56899999999999999999999998873 5 7899999999999999999999999999987
Q ss_pred -CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHHHHH
Q 038432 443 -YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDML 521 (602)
Q Consensus 443 -~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~ 521 (602)
..|.||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||+|+|+..
T Consensus 64 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~ 143 (153)
T 1awc_B 64 TKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDN 143 (153)
T ss_dssp CTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred CCCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHc
Confidence 7799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcee
Q 038432 522 QKREIGHRI 530 (602)
Q Consensus 522 ~~~~~~~~l 530 (602)
++.+++++|
T Consensus 144 ~~~~i~~~L 152 (153)
T 1awc_B 144 GNEDLAEIL 152 (153)
T ss_dssp TCHHHHHHH
T ss_pred CCHHHHHHh
Confidence 999888765
No 67
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.97 E-value=1.4e-30 Score=233.31 Aligned_cols=156 Identities=22% Similarity=0.250 Sum_probs=147.7
Q ss_pred CCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCC
Q 038432 362 SKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISD 441 (602)
Q Consensus 362 ~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~ 441 (602)
....||||.|+..|+.+++++|+++|++++..+ ..|.||||+|+. |+.+++++|+++|++++
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-----------------~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~ 64 (162)
T 1ihb_A 3 EPWGNELASAAARGDLEQLTSLLQNNVNVNAQN-----------------GFGRTALQVMKL-GNPEIARRLLLRGANPD 64 (162)
T ss_dssp --CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCC-----------------TTSCCHHHHCCS-SCHHHHHHHHHTTCCTT
T ss_pred chHhhHHHHHHHcCCHHHHHHHHhCCCCccccC-----------------ccCccHHHHHHc-CcHHHHHHHHHcCCCCC
Confidence 356799999999999999999999999999998 899999999999 99999999999999998
Q ss_pred C--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCC-cccCCCCCCChhhHH
Q 038432 442 P--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSD-VVGANKCEFSSTNLN 518 (602)
Q Consensus 442 ~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~-~~~~d~~g~t~l~~a 518 (602)
. ..|.||||+|+..|+.+++++|+++|+++|.+|.+|+||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|
T Consensus 65 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A 144 (162)
T 1ihb_A 65 LKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLA 144 (162)
T ss_dssp CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHH
T ss_pred CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHH
Confidence 7 7899999999999999999999999999999999999999999999999999999999998 599999999999999
Q ss_pred HHHHHHhhhceeeeccC
Q 038432 519 DMLQKREIGHRITVHDD 535 (602)
Q Consensus 519 ~~~~~~~~~~~l~~~~~ 535 (602)
+..++.++++.|+.+++
T Consensus 145 ~~~~~~~~~~~Ll~~GA 161 (162)
T 1ihb_A 145 RLYGRNEVVSLMQANGA 161 (162)
T ss_dssp HHTTCHHHHHHHHHTC-
T ss_pred HHcCCHHHHHHHHHhCC
Confidence 99999999999887763
No 68
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=99.97 E-value=2.7e-29 Score=233.53 Aligned_cols=196 Identities=16% Similarity=0.308 Sum_probs=180.1
Q ss_pred HhhhHhHHHHhhhHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcchhHHHHhhCCHHHHHHHHHHhhHhhhhhhcccc
Q 038432 110 VEGTRRTMEFRNSIEAASNFVGRNRLPPRLKKQILAYMCLRFKAESLNQHQLIEQLPKSICKSICQHLFLHTVEKVYLFK 189 (602)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~m~~~~l~~~l~~ri~~y~~~~~~~~~~~~~~~l~~lp~~l~~~v~~~~~~~~l~~~~~f~ 189 (602)
++++.+..+|++++..+++||+.++||++|+.||++|++|.|..+..+++++++.||+.||.++..+.+.++++++|+|.
T Consensus 2 ~~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~~~~~e~~il~~l~~~L~~~i~~~~~~~~l~~~~~f~ 81 (202)
T 3bpz_A 2 SAMDSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQGKMFDEDSILGELNGPLREKIVNFNCRKLVASMPLFA 81 (202)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHSCHHHHHHHHHHHTHHHHHTCHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCCchh
Confidence 35678899999999999999999999999999999999999987778899999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEeccCceeEEEEeCCCCeeehhhhhcCCCceeEE
Q 038432 190 DVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFGEVGALCCRPQIYTY 269 (602)
Q Consensus 190 ~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~fGe~~ll~~~~~~~tv 269 (602)
+++++++..++..++.+.|.||++|+++|+.++.+|||.+|.|+++..+ +++ ..+++|++||+.+++.+.++++++
T Consensus 82 ~l~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~-g~~---~~l~~G~~fGe~~~~~~~~~~~~v 157 (202)
T 3bpz_A 82 NADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKG-NKE---MKLSDGSYFGEICLLTRGRRTASV 157 (202)
T ss_dssp TSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECEEEEECTT-SCC---EEEETTCEECHHHHHHCSBCSSEE
T ss_pred cCCHHHHHHHHHhCCceEECCCCEEEECCCcCCeEEEEeccEEEEEECC-CeE---EEEcCCCEeccHHHhcCCCcccEE
Confidence 9999999999999999999999999999999999999999999998533 333 268999999999999999999999
Q ss_pred EEcceeEEEEeeHHHHHHHHHhChHHHHHHHHHHHHhhhh
Q 038432 270 RTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHKK 309 (602)
Q Consensus 270 ~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~ll~~~~~ 309 (602)
+|.++|+++.+++++|.+++..+|.....+.+.+..+...
T Consensus 158 ~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~~~~rl~~ 197 (202)
T 3bpz_A 158 RADTYCRLYSLSVDNFNEVLEEYPMMRRAFETVAIDRLDR 197 (202)
T ss_dssp EESSCEEEEEEEHHHHHHHHHHSGGGHHHHHHHHHHHHHH
T ss_pred EEeeEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988887776665544
No 69
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=99.97 E-value=1e-29 Score=238.32 Aligned_cols=196 Identities=18% Similarity=0.296 Sum_probs=175.3
Q ss_pred HHHHhhhHhHHHHhhhHHHHHhhhhcCCCChhHHHHHHHHHHHHHHh-hcchhHHHHhhCCHHHHHHHHHHhhHhhhhhh
Q 038432 107 NLVVEGTRRTMEFRNSIEAASNFVGRNRLPPRLKKQILAYMCLRFKA-ESLNQHQLIEQLPKSICKSICQHLFLHTVEKV 185 (602)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~m~~~~l~~~l~~ri~~y~~~~~~~-~~~~~~~~l~~lp~~l~~~v~~~~~~~~l~~~ 185 (602)
.++++.+++..+|++++..+++||++++||++|+.||++|++|.|.. ++.+++++++.||++||.++..+++..++ ++
T Consensus 2 ~ii~~~~~~~~~~~~~~~~i~~ym~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~L~~~i~~~~~~~l~-~~ 80 (212)
T 3ukn_A 2 AMDQRMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRADIAMHLNKELL-QL 80 (212)
T ss_dssp ----------CHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCTGGGCCCCCTTTTSCHHHHHHHHTTCCCGGG-GS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCCCHHHHHHHcCHHHHHHHHHHHHHHHH-hc
Confidence 56788899999999999999999999999999999999999999985 56778899999999999999999998887 89
Q ss_pred cccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEeccCceeEEEEeCCCCeeehhhhhcCC--
Q 038432 186 YLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFGEVGALCCR-- 263 (602)
Q Consensus 186 ~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~fGe~~ll~~~-- 263 (602)
|+|++++++++..++..++.+.|.||++|+++||.++.+|||.+|.|+++.. +..+..+++|++||+.+++.+.
T Consensus 81 ~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~----~~~~~~l~~G~~fGe~~~~~~~~~ 156 (212)
T 3ukn_A 81 PLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLKD----NTVLAILGKGDLIGSDSLTKEQVI 156 (212)
T ss_dssp GGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEESS----SCEEEEECTTCEEECSCCSSSSCC
T ss_pred HHhhcCCHHHHHHHHHHhheEEeCCCCEEEECCCcccEEEEEEecEEEEEEC----CeEEEEecCCCCcCcHHhccCCCC
Confidence 9999999999999999999999999999999999999999999999999962 2678999999999999999998
Q ss_pred CceeEEEEcceeEEEEeeHHHHHHHHHhChHHHHHHHHHHHHhh
Q 038432 264 PQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQH 307 (602)
Q Consensus 264 ~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~ll~~~ 307 (602)
+++++++|.++|+++.+++++|.+++..+|+....+++.+..+.
T Consensus 157 ~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~~l 200 (212)
T 3ukn_A 157 KTNANVKALTYCDLQYISLKGLREVLRLYPEYAQKFVSEIQHDL 200 (212)
T ss_dssp BBCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHE
T ss_pred CcceEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHhh
Confidence 89999999999999999999999999999999988888776654
No 70
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.97 E-value=9.5e-31 Score=253.95 Aligned_cols=200 Identities=14% Similarity=0.050 Sum_probs=160.4
Q ss_pred HHhhhhhhcccccccccc----cCCCC------CCCCCchhhhHhh---hcCcHHHHHHHHhcCCC-----------CCC
Q 038432 304 LQQHKKLKDLNIGDLIAE----SGEED------GDPNMSVNLLTVA---STGNAAFLDELLKARLD-----------PDI 359 (602)
Q Consensus 304 l~~~~~~~~~~~~~~l~~----~~~~~------~~~~g~t~L~~A~---~~g~~~~~~~Ll~~g~~-----------~n~ 359 (602)
+..+...++.+..+.+++ .+.+. .+..|.||||+|+ ..|+.+++++|++.|++ .+.
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~ 88 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRD 88 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccc
Confidence 444555555665554444 44433 2366999999999 78999999999998744 445
Q ss_pred CCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHh---c
Q 038432 360 GDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYH---C 436 (602)
Q Consensus 360 ~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~---~ 436 (602)
.|..|+||||+||..|+.++|++|+++|++++..+....... .-....+..|.||||+|+..|+.+++++|++ +
T Consensus 89 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~---~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ 165 (260)
T 3jxi_A 89 VYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQP---KDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHK 165 (260)
T ss_dssp SSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSS---SCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSC
T ss_pred cccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCc---ccccccccCCCCHHHHHHHcCCHHHHHHHHhcccc
Confidence 566999999999999999999999999999998860000000 0000000369999999999999999999999 9
Q ss_pred CCCCCC--CCcchhHHHHHhcCC---------HHHHHHHHHcCCCC-------CCCCCCCcCHHHHHHHcCcHHHHHHHH
Q 038432 437 TAISDP--YTAGDLLCTAEKRND---------MSVMEELVKYGLNV-------DSKDRHGRTAIEIAMAENNVEMVNFLV 498 (602)
Q Consensus 437 g~~~~~--~~g~t~L~~A~~~~~---------~~~~~~Ll~~ga~~-------n~~d~~g~TpLh~A~~~~~~~iv~~Ll 498 (602)
|++++. ..|+||||+|+..++ .+++++|+++|+++ +.+|..|+||||+|+..|+.+++++|+
T Consensus 166 ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll 245 (260)
T 3jxi_A 166 QADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHII 245 (260)
T ss_dssp CCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred CCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHH
Confidence 999987 789999999998888 79999999999999 679999999999999999999999999
Q ss_pred HCCCCccc
Q 038432 499 MNGSDVVG 506 (602)
Q Consensus 499 ~~ga~~~~ 506 (602)
++|++...
T Consensus 246 ~~g~~~~~ 253 (260)
T 3jxi_A 246 RREIADAA 253 (260)
T ss_dssp HHHHHHHC
T ss_pred HhCCCccc
Confidence 99987653
No 71
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.97 E-value=1.1e-29 Score=225.86 Aligned_cols=151 Identities=21% Similarity=0.283 Sum_probs=138.8
Q ss_pred CchhhhHhhhcCcHHHHHHHHhc-CCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHH
Q 038432 331 MSVNLLTVASTGNAAFLDELLKA-RLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIIL 409 (602)
Q Consensus 331 g~t~L~~A~~~g~~~~~~~Ll~~-g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~ 409 (602)
+.||||.|+..|+.++++.|++. +.+++..|..|.||||+ +..|+.+++++|+++|++++..|
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~--------------- 65 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQD--------------- 65 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCC---------------
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcC---------------
Confidence 56899999999999999999988 45899999999999999 99999999999999999999988
Q ss_pred hhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHH
Q 038432 410 LDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMA 487 (602)
Q Consensus 410 ~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~ 487 (602)
..|.||||+|+..|+.+++++|+++|++++. ..|.||||+|+..|+.+++++|+++ ++++.+|.+|.||||+|+.
T Consensus 66 --~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~ 142 (156)
T 1bd8_A 66 --TSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQ 142 (156)
T ss_dssp --TTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHH
T ss_pred --CCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHH
Confidence 8999999999999999999999999998887 6788999999999999999999988 9999999999999999999
Q ss_pred cCcHHHHHHHHHC
Q 038432 488 ENNVEMVNFLVMN 500 (602)
Q Consensus 488 ~~~~~iv~~Ll~~ 500 (602)
.|+.+++++|+++
T Consensus 143 ~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 143 RGAQDLVDILQGH 155 (156)
T ss_dssp SCCHHHHHHHHTT
T ss_pred cCcHHHHHHHHhh
Confidence 9999999999864
No 72
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.97 E-value=2.4e-31 Score=254.50 Aligned_cols=177 Identities=18% Similarity=0.082 Sum_probs=133.5
Q ss_pred CCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHH
Q 038432 329 PNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIII 408 (602)
Q Consensus 329 ~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~ 408 (602)
..|.||||.|++.|+.+.++.|+++|++++.. ..|.||||.|+..|+.+++++|++.|++++..|
T Consensus 3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d-------------- 67 (239)
T 1ycs_B 3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPN-------------- 67 (239)
T ss_dssp -----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCC--------------
T ss_pred ccccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcC--------------
Confidence 45899999999999999999999999999864 789999999999999999999999999999998
Q ss_pred HhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCc-CHHHHH
Q 038432 409 LLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGR-TAIEIA 485 (602)
Q Consensus 409 ~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~-TpLh~A 485 (602)
..|.||||+|+..|+.+++++|+++|++++. ..|+||||+|+..|+.+++++|+++|++++.+|..|. ||||+|
T Consensus 68 ---~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a 144 (239)
T 1ycs_B 68 ---DEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKC 144 (239)
T ss_dssp ---TTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHC
T ss_pred ---CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHH
Confidence 9999999999999999999999999999987 7899999999999999999999999999999998887 999999
Q ss_pred --HHcCcHHHHHHHHHCCCCcccC---------CCCCCChhhHHHHHHH
Q 038432 486 --MAENNVEMVNFLVMNGSDVVGA---------NKCEFSSTNLNDMLQK 523 (602)
Q Consensus 486 --~~~~~~~iv~~Ll~~ga~~~~~---------d~~g~t~l~~a~~~~~ 523 (602)
+..|+.+++++|+++|++++.. |..|.+|++++...|.
T Consensus 145 ~~~~~g~~~~~~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~ 193 (239)
T 1ycs_B 145 EEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD 193 (239)
T ss_dssp CSSSTTCCCHHHHHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred HHhhhccHHHHHHHHHhhhcccccccceEEEEeccCCCCCCcccccCCC
Confidence 7889999999999999999877 5568888888755443
No 73
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.96 E-value=5.5e-30 Score=231.93 Aligned_cols=154 Identities=21% Similarity=0.229 Sum_probs=145.6
Q ss_pred CchHHHHHHhcCChHHHHHHHhcccC-CCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC
Q 038432 364 GRTPLHIAASKGHEECVLVLLKHASN-VHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP 442 (602)
Q Consensus 364 g~t~Lh~A~~~g~~~~v~~Ll~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~ 442 (602)
+.||||.|+..|+.++++.|++.+.+ ++..+ ..|.||||+|+..|+.+++++|+++|++++.
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~-----------------~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~ 64 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPD-----------------ERGFTPLIWASAFGEIETVRFLLEWGADPHI 64 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCC-----------------TTSCCHHHHHHHTTCHHHHHHHHHHTCCTTC
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCCC-----------------CCCCCHHHHHHHcCCHHHHHHHHHcCCCchh
Confidence 46899999999999999999999877 77776 8999999999999999999999999999987
Q ss_pred --CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHHHH
Q 038432 443 --YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDM 520 (602)
Q Consensus 443 --~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~ 520 (602)
..|.||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.
T Consensus 65 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~ 144 (172)
T 3v30_A 65 LAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVA 144 (172)
T ss_dssp CCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred hcccCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHH
Confidence 789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhceeeecc
Q 038432 521 LQKREIGHRITVHD 534 (602)
Q Consensus 521 ~~~~~~~~~l~~~~ 534 (602)
.++.++++.|..++
T Consensus 145 ~~~~~~~~~L~~~~ 158 (172)
T 3v30_A 145 LGYRKVQQVIENHI 158 (172)
T ss_dssp HTCHHHHHHHHHHH
T ss_pred hCcHHHHHHHHHHH
Confidence 99999888887665
No 74
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.96 E-value=7.9e-30 Score=252.86 Aligned_cols=181 Identities=19% Similarity=0.194 Sum_probs=163.1
Q ss_pred HhhhcCcHHHHHHHHhcCCCCCC---------CCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHH
Q 038432 337 TVASTGNAAFLDELLKARLDPDI---------GDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDII 407 (602)
Q Consensus 337 ~A~~~g~~~~~~~Ll~~g~~~n~---------~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~ 407 (602)
.++..++.+.++.++....++.. .+..|.||||.||..|+.++|++|+++|+++|..|
T Consensus 4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~------------- 70 (299)
T 1s70_B 4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYAN------------- 70 (299)
T ss_dssp HHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBC-------------
T ss_pred hHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcCCCCcccC-------------
Confidence 46777888888888876544332 24568899999999999999999999999999998
Q ss_pred HHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCC---------
Q 038432 408 ILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDR--------- 476 (602)
Q Consensus 408 ~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~--------- 476 (602)
..|.||||+|+..|+.+++++|+++|++++. ..|.||||+|+..|+.+++++|+++|++++..|.
T Consensus 71 ----~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A 146 (299)
T 1s70_B 71 ----VDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIA 146 (299)
T ss_dssp ----TTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHC
T ss_pred ----CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHH
Confidence 8999999999999999999999999999987 7799999999999999999999999999987764
Q ss_pred ---------------------------------------------------CCcCHHHHHHHcCcHHHHHHHHHCCCCcc
Q 038432 477 ---------------------------------------------------HGRTAIEIAMAENNVEMVNFLVMNGSDVV 505 (602)
Q Consensus 477 ---------------------------------------------------~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~ 505 (602)
.|.||||+|+..|+.+++++|+++|+|++
T Consensus 147 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~ 226 (299)
T 1s70_B 147 EEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVN 226 (299)
T ss_dssp CSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT
T ss_pred HhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCC
Confidence 46688899999999999999999999999
Q ss_pred cCCCCCCChhhHHHHHHHHhhhceeeecc
Q 038432 506 GANKCEFSSTNLNDMLQKREIGHRITVHD 534 (602)
Q Consensus 506 ~~d~~g~t~l~~a~~~~~~~~~~~l~~~~ 534 (602)
.+|..|.||||+|+..++.++++.|+..+
T Consensus 227 ~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g 255 (299)
T 1s70_B 227 IKDYDGWTPLHAAAHWGKEEACRILVENL 255 (299)
T ss_dssp CCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred CcCCCCCcHHHHHHhcCCHHHHHHHHHcC
Confidence 99999999999999999999888888766
No 75
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.96 E-value=1.1e-29 Score=248.28 Aligned_cols=161 Identities=22% Similarity=0.268 Sum_probs=153.8
Q ss_pred CCCCCCCCchhhhHhhhcCcHHHHHHHHhcCC-CCCCCCCCCchHHHHHH-----hcCChHHHHHHHhcccCCCchhhHH
Q 038432 324 EEDGDPNMSVNLLTVASTGNAAFLDELLKARL-DPDIGDSKGRTPLHIAA-----SKGHEECVLVLLKHASNVHLRDYII 397 (602)
Q Consensus 324 ~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~-~~n~~d~~g~t~Lh~A~-----~~g~~~~v~~Ll~~g~~~~~~~~~~ 397 (602)
.+..+.+|.||||+|+..|+.+++++|++.|+ +++..|..|.||||+|+ ..++.+++++|++.|++++..+
T Consensus 104 ~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~--- 180 (276)
T 4hbd_A 104 VNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKAS--- 180 (276)
T ss_dssp HTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCT---
T ss_pred CcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccC---
Confidence 45578899999999999999999999999998 99999999999999999 6789999999999999999887
Q ss_pred HHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHH-cCCCCCCC
Q 038432 398 FMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVK-YGLNVDSK 474 (602)
Q Consensus 398 ~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~-~ga~~n~~ 474 (602)
..|.||||+|+..|+.+++++|+++|++++. ..|+||||+|+..|+.+++++|++ .|+|+|.+
T Consensus 181 --------------~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~ 246 (276)
T 4hbd_A 181 --------------QAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLT 246 (276)
T ss_dssp --------------TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCC
T ss_pred --------------CCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCc
Confidence 8999999999999999999999999999987 789999999999999999999999 89999999
Q ss_pred CCCCcCHHHHHHHcCcHHHHHHHHHCC
Q 038432 475 DRHGRTAIEIAMAENNVEMVNFLVMNG 501 (602)
Q Consensus 475 d~~g~TpLh~A~~~~~~~iv~~Ll~~g 501 (602)
|..|+||||+|+..|+.+++++|++++
T Consensus 247 d~~g~TpL~~A~~~g~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 247 DRDGSTALMVALDAGQSEIASMLYSRM 273 (276)
T ss_dssp CTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 999999999999999999999999864
No 76
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.96 E-value=1.2e-29 Score=231.18 Aligned_cols=158 Identities=16% Similarity=0.175 Sum_probs=147.3
Q ss_pred CCCchHHHHHHhcCChHHHHHHHhc-ccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCC
Q 038432 362 SKGRTPLHIAASKGHEECVLVLLKH-ASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAIS 440 (602)
Q Consensus 362 ~~g~t~Lh~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~ 440 (602)
.++.+|||.||..|+.+++++|++. +.+++..+ ..|.||||+|+..|+.+++++|+++|+++
T Consensus 3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~-----------------~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~ 65 (179)
T 3f6q_A 3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGD-----------------DHGFSPLHWACREGRSAVVEMLIMRGARI 65 (179)
T ss_dssp ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCC-----------------TTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccC-----------------CCCCCHHHHHHHcCcHHHHHHHHHcCCCC
Confidence 4678999999999999999999998 77889887 89999999999999999999999999999
Q ss_pred CC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHH
Q 038432 441 DP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLN 518 (602)
Q Consensus 441 ~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a 518 (602)
+. ..|.||||+|+..|+.+++++|+++|+++|.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||+++|
T Consensus 66 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A 145 (179)
T 3f6q_A 66 NVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKA 145 (179)
T ss_dssp TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGS
T ss_pred CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHH
Confidence 87 7899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhceeeeccCC
Q 038432 519 DMLQKREIGHRITVHDDN 536 (602)
Q Consensus 519 ~~~~~~~~~~~l~~~~~~ 536 (602)
+..++.++++.+...+.+
T Consensus 146 ~~~~~~~~~~~L~~~g~~ 163 (179)
T 3f6q_A 146 KAPLRELLRERAEKMGQN 163 (179)
T ss_dssp CHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHhhcC
Confidence 999999988888877643
No 77
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.96 E-value=6e-30 Score=229.98 Aligned_cols=157 Identities=23% Similarity=0.163 Sum_probs=144.8
Q ss_pred CCCCCchHHHHHHhcCChHHHHHHHh-cccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCC
Q 038432 360 GDSKGRTPLHIAASKGHEECVLVLLK-HASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTA 438 (602)
Q Consensus 360 ~d~~g~t~Lh~A~~~g~~~~v~~Ll~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~ 438 (602)
.|.+|.||||.|+..|+.++++.|++ .+.+++..+ ..|.||||+|+..|+.+++++|+++|+
T Consensus 4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~-----------------~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 66 (165)
T 3twr_A 4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIE-----------------GRQSTPLHFAAGYNRVSVVEYLLQHGA 66 (165)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTT-----------------TTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccc-----------------cCCCCHHHHHHHcChHHHHHHHHhcCC
Confidence 46789999999999999999999998 466777776 889999999999999999999999999
Q ss_pred CCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhh
Q 038432 439 ISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTN 516 (602)
Q Consensus 439 ~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~ 516 (602)
+++. ..|.||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||+|
T Consensus 67 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~ 146 (165)
T 3twr_A 67 DVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLD 146 (165)
T ss_dssp CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGG
T ss_pred CCCccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhH
Confidence 9987 78999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhceeeecc
Q 038432 517 LNDMLQKREIGHRITVHD 534 (602)
Q Consensus 517 ~a~~~~~~~~~~~l~~~~ 534 (602)
+|.. ++.+++++|...+
T Consensus 147 ~a~~-~~~~i~~~L~~~g 163 (165)
T 3twr_A 147 LVKD-GDTDIQDLLRGDA 163 (165)
T ss_dssp GSCT-TCHHHHHHHHTC-
T ss_pred hHhc-CChHHHHHHhhcc
Confidence 9876 7778888776554
No 78
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.96 E-value=2.1e-30 Score=259.93 Aligned_cols=178 Identities=17% Similarity=0.141 Sum_probs=149.6
Q ss_pred chhhhHhhhcCcHHHHHHHHhcCCCCCC-CCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHh
Q 038432 332 SVNLLTVASTGNAAFLDELLKARLDPDI-GDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILL 410 (602)
Q Consensus 332 ~t~L~~A~~~g~~~~~~~Ll~~g~~~n~-~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~ 410 (602)
.+.+|.|+..+..++++.|++.|+++|. +|..|+||||+||..|+.++|++|+++|++++.+|
T Consensus 98 ~~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d---------------- 161 (327)
T 1sw6_A 98 QQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGD---------------- 161 (327)
T ss_dssp ------CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCC----------------
T ss_pred cchhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcC----------------
Confidence 3456889989999999999999999999 89999999999999999999999999999999998
Q ss_pred hccCCcHHHHHHHcCC---hhHHHHHHhcC-CCCCC--CCcchhHHHHHh----cCCHHHHHHHHHc-------------
Q 038432 411 DMNGNTALWEAISSKH---HSIFRILYHCT-AISDP--YTAGDLLCTAEK----RNDMSVMEELVKY------------- 467 (602)
Q Consensus 411 ~~~g~tpLh~A~~~~~---~~~~~~Ll~~g-~~~~~--~~g~t~L~~A~~----~~~~~~~~~Ll~~------------- 467 (602)
..|.||||+|+..|+ .++++.|++.+ ++++. ..|+||||+|+. .|+.+++++|++.
T Consensus 162 -~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i 240 (327)
T 1sw6_A 162 -NMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPI 240 (327)
T ss_dssp -TTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCE
T ss_pred -CCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHH
Confidence 999999999999998 78888888887 56665 889999999999 8999999999987
Q ss_pred -------CCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHHHHHHHHhhhceeeecc
Q 038432 468 -------GLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRITVHD 534 (602)
Q Consensus 468 -------ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~~~~~l~~~~ 534 (602)
|+++|.+|..|.||||.|+. +++|+++ +++.+|..|+||||+|+..++.++++.|+.++
T Consensus 241 ~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~--~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~G 306 (327)
T 1sw6_A 241 QSGTNEKESKPNDKNGERKDSILENLD------LKWIIAN--MLNAQDSNGDTCLNIAARLGNISIVDALLDYG 306 (327)
T ss_dssp EEC----------------CHHHHHCS------HHHHHHH--TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTT
T ss_pred HhhhhcccCCcccccccCCChhHHHHH------HHHHHHh--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 89999999999999999996 9999998 68999999999999999999999998888776
No 79
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.96 E-value=4.2e-29 Score=222.15 Aligned_cols=151 Identities=21% Similarity=0.206 Sum_probs=143.5
Q ss_pred CchHHHHHHhcCChHHHHHHHhc-ccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC
Q 038432 364 GRTPLHIAASKGHEECVLVLLKH-ASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP 442 (602)
Q Consensus 364 g~t~Lh~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~ 442 (602)
|.||||.|+..|+.+++++|++. +.+++..+ ..|.||||+ +..|+.+++++|+++|++++.
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~-----------------~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~ 63 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALN-----------------RFGKTALQV-MMFGSTAIALELLKQGASPNV 63 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCC-----------------TTSCCHHHH-SCTTCHHHHHHHHHTTCCTTC
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCccccC-----------------CCCCcHHHH-HHcCCHHHHHHHHHCCCCCCC
Confidence 57999999999999999999998 45888887 899999999 999999999999999999987
Q ss_pred --CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHHHH
Q 038432 443 --YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDM 520 (602)
Q Consensus 443 --~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~ 520 (602)
..|.||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++ ++++.+|..|.||||+|+.
T Consensus 64 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~ 142 (156)
T 1bd8_A 64 QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQ 142 (156)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHH
T ss_pred cCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHH
Confidence 7899999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred HHHHhhhceeeec
Q 038432 521 LQKREIGHRITVH 533 (602)
Q Consensus 521 ~~~~~~~~~l~~~ 533 (602)
.++.++++.|..+
T Consensus 143 ~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 143 RGAQDLVDILQGH 155 (156)
T ss_dssp SCCHHHHHHHHTT
T ss_pred cCcHHHHHHHHhh
Confidence 9999998887643
No 80
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.96 E-value=6.9e-30 Score=242.12 Aligned_cols=197 Identities=18% Similarity=0.064 Sum_probs=160.5
Q ss_pred HHHHHhcCCCCCCC---CCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHH
Q 038432 347 LDELLKARLDPDIG---DSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAIS 423 (602)
Q Consensus 347 ~~~Ll~~g~~~n~~---d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~ 423 (602)
++.|++.|++++.. +.+|.||||+|+..|+.+++++|++.|++++..| ..|.||||+|+.
T Consensus 1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d-----------------~~g~tpLh~A~~ 63 (229)
T 2vge_A 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPN-----------------EEGITALHNAIC 63 (229)
T ss_dssp ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCC-----------------TTSCCHHHHHHH
T ss_pred CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCC-----------------CCCCCHHHHHHH
Confidence 46788899887765 4567889999999999999999999999999998 999999999999
Q ss_pred cCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCC-CCCcCHHHHH--HHcCcHHHHHHHH
Q 038432 424 SKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKD-RHGRTAIEIA--MAENNVEMVNFLV 498 (602)
Q Consensus 424 ~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d-~~g~TpLh~A--~~~~~~~iv~~Ll 498 (602)
.|+.+++++|+++|++++. ..|.||||+|+..|+.+++++|+++|++++.+| .+|+||||+| +..|+.+++++|+
T Consensus 64 ~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll 143 (229)
T 2vge_A 64 GANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLA 143 (229)
T ss_dssp TTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHH
T ss_pred cCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHH
Confidence 9999999999999999987 789999999999999999999999999999997 6999999999 9999999999999
Q ss_pred HCCCCcccCCCCCCChhhHHHHHHHHhhhceeeeccCCCchhHHHhhhhhhhhhhhhcCCCCCCcceeEEEecCCCcccc
Q 038432 499 MNGSDVVGANKCEFSSTNLNDMLQKREIGHRITVHDDNSTQNEVLLKKLEIIDFEAKEGKSKGGNCQRVSIYRGHPLVRK 578 (602)
Q Consensus 499 ~~ga~~~~~d~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 578 (602)
++|+|++.+|..|.||++.++... ..+.+...+ ++ .........|.++.+.++..|+.-...
T Consensus 144 ~~ga~~~~~~~~~~~~l~~~~~~~---~~~~ll~~g-------------a~--~~~~~~d~~G~TpL~~A~~~g~~~~v~ 205 (229)
T 2vge_A 144 DVEQSMGLMNSGAVYALWDYSAEF---GDELSFREG-------------ES--VTVLRRDGPEETDWWWAALHGQEGYVP 205 (229)
T ss_dssp HHHHHTTTSGGGEEEESSCBCCSS---TTBCCBCTT-------------CE--EEEEESSCTTCSSEEEEEETTEEEEEE
T ss_pred HcCCCcccccCCchHHHHHHhhcc---ccccCcccc-------------cc--ccccccCCCcccHHHHHHHcCCcceee
Confidence 999999999999999999653322 222333222 22 112334557899999999999964433
No 81
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.96 E-value=7.2e-29 Score=215.05 Aligned_cols=132 Identities=16% Similarity=0.185 Sum_probs=122.8
Q ss_pred CCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHH
Q 038432 354 RLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRIL 433 (602)
Q Consensus 354 g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L 433 (602)
++++|..|..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+. |+.+++++|
T Consensus 2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-----------------~~g~t~L~~A~~-~~~~~v~~L 63 (136)
T 1d9s_A 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALN-----------------RFGRRPIQVMMM-GSAQVAELL 63 (136)
T ss_dssp CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-----------------TTCCTTTTTSTT-SCHHHHHHH
T ss_pred CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcC-----------------CCCCCHHHHHHc-CCHHHHHHH
Confidence 57888999999999999999999999999999999999887 889999999999 999999999
Q ss_pred HhcCCCCCC--CC-cchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCC
Q 038432 434 YHCTAISDP--YT-AGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSD 503 (602)
Q Consensus 434 l~~g~~~~~--~~-g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~ 503 (602)
+++|++++. .. |.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|+++|||
T Consensus 64 l~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 64 LLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136 (136)
T ss_dssp HHHTCCSSCCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred HHCCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 999998887 55 89999999999999999999999999999999999999999999999999999999986
No 82
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=99.96 E-value=2e-29 Score=255.16 Aligned_cols=214 Identities=20% Similarity=0.307 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCCCCchHHHHHHHHHHHHHHHhhcccCccccccchhHHHHHHHHHHH
Q 038432 15 DIILVHCAGCLYYLLADRYPHKGETWLGSVNPNFTETSLWIRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFN 94 (602)
Q Consensus 15 ~l~~~H~~aC~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~Y~~s~ywa~~t~~tvGygd~~~~~~~e~~~~~~~~~~g 94 (602)
+++++|++||++|.+.... +.+.+..|..|+||+++||||+||||+.|.|..+++++++++++|
T Consensus 136 ~~~~~~~~a~~~~~~e~~~----------------~~~~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g 199 (355)
T 3beh_A 136 FGVVLFAVALAAYVIERDI----------------QPEKFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSG 199 (355)
T ss_dssp HHHHHHHHHHHHHHHHTTT----------------CHHHHSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCC----------------CCcccccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHH
Confidence 6678899999999886321 112345799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhHhHHHHhhhHHHHHhhhhcCCCChhHHHHHHHHHHHHHHhhcchhHHHHhhCCHHHHHHHH
Q 038432 95 LGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRLPPRLKKQILAYMCLRFKAESLNQHQLIEQLPKSICKSIC 174 (602)
Q Consensus 95 ~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~m~~~~l~~~l~~ri~~y~~~~~~~~~~~~~~~l~~lp~~l~~~v~ 174 (602)
++++++++|.+.+.+.+..++ ++++
T Consensus 200 ~~~~~~~~~~i~~~~~~~~~~----------------------------~~~~--------------------------- 224 (355)
T 3beh_A 200 IGIFGLWAGILATGFYQEVRR----------------------------GDFV--------------------------- 224 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----------------------------HHHH---------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH----------------------------Hhhc---------------------------
Confidence 999999999998766432110 0010
Q ss_pred HHhhHhhhhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEeccCceeEEEEeCCCCee
Q 038432 175 QHLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMF 254 (602)
Q Consensus 175 ~~~~~~~l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~f 254 (602)
...+.++++|+|++++++.++.+...++.+.|+|||+|+++||.++.+|+|.+|.|+++..+ ...+++|++|
T Consensus 225 --~~~~~l~~~~lf~~ls~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~------~~~l~~G~~f 296 (355)
T 3beh_A 225 --RNWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN------PVELGPGAFF 296 (355)
T ss_dssp --HHHC--------------------------------------------------------------------------
T ss_pred --ccchhhhcccccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeeEEEEEECC------eeEECCCCEE
Confidence 02367889999999999999999999999999999999999999999999999999998654 2478999999
Q ss_pred ehhhhhcCCCceeEEEEcceeEEEEeeHHHHHHHHHhChHHHHHHHHHHHHhh
Q 038432 255 GEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQH 307 (602)
Q Consensus 255 Ge~~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~ll~~~ 307 (602)
|+.+++.+.+++.+++|.++|+++.++++++.++++++|+....+.+.+.++.
T Consensus 297 Ge~~~l~~~~~~~~~~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~l~~rl 349 (355)
T 3beh_A 297 GEMALISGEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALERR 349 (355)
T ss_dssp -----------------------------------------------------
T ss_pred eehHHhCCCCcceEEEECccEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998877776655543
No 83
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.96 E-value=5e-29 Score=221.60 Aligned_cols=143 Identities=16% Similarity=0.184 Sum_probs=99.6
Q ss_pred CCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcC
Q 038432 358 DIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCT 437 (602)
Q Consensus 358 n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g 437 (602)
+..+..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+ .|+.+++++|+++|
T Consensus 6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-----------------~~g~t~L~~A~-~~~~~~v~~Ll~~g 67 (156)
T 1bi7_B 6 GSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPN-----------------SYGRRPIQVMM-MGSARVAELLLLHG 67 (156)
T ss_dssp ----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCC-----------------SSSCCTTTSSC-TTCHHHHHHHHTTT
T ss_pred cCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCC-----------------CCCCCHHHHHH-cCCHHHHHHHHHcC
Confidence 3445667777777777777777777777777777766 67777777764 67777777777777
Q ss_pred CCCCC--CCcch-hHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCCh
Q 038432 438 AISDP--YTAGD-LLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSS 514 (602)
Q Consensus 438 ~~~~~--~~g~t-~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~ 514 (602)
++++. ..|.| |||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||
T Consensus 68 ~~~~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~ 147 (156)
T 1bi7_B 68 AEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDA 147 (156)
T ss_dssp CCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-------------
T ss_pred CCCCCcCCCCCcHHHHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcc
Confidence 77666 56666 8888888888888899999999999999999999999999999999999999999999999999999
Q ss_pred hhHH
Q 038432 515 TNLN 518 (602)
Q Consensus 515 l~~a 518 (602)
.+-+
T Consensus 148 ~~~~ 151 (156)
T 1bi7_B 148 AEGP 151 (156)
T ss_dssp ----
T ss_pred cccC
Confidence 8754
No 84
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.95 E-value=3e-29 Score=228.99 Aligned_cols=160 Identities=12% Similarity=0.068 Sum_probs=136.4
Q ss_pred CchhhhHhhhcCcHHHHHHHHhcCCCCCCCC-CCCchHHHHHHhcCCh----HHHHHHHhcccCCCchhhHHHHhccchh
Q 038432 331 MSVNLLTVASTGNAAFLDELLKARLDPDIGD-SKGRTPLHIAASKGHE----ECVLVLLKHASNVHLRDYIIFMYNLSYD 405 (602)
Q Consensus 331 g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d-~~g~t~Lh~A~~~g~~----~~v~~Ll~~g~~~~~~~~~~~~~~~~~~ 405 (602)
+.++|+.|++.|+.+.++.++..+ ++..+ ..|+||||+|+..|+. +++++|+++|+|+|.+|
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~--~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d----------- 72 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKG--YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRT----------- 72 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHS--SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCC-----------
T ss_pred cccHHHHHHHcCCHHHHHHHHhcC--cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCC-----------
Confidence 367899999999999999999876 45555 7799999999999975 59999999999999998
Q ss_pred HHHHhhccCCcHHHHHHHcCC------hhHHHHHHhcCCCCCC--CCcc-hhHHHHHhcC-----CHHHHHHHHH-cCCC
Q 038432 406 IIILLDMNGNTALWEAISSKH------HSIFRILYHCTAISDP--YTAG-DLLCTAEKRN-----DMSVMEELVK-YGLN 470 (602)
Q Consensus 406 ~~~~~~~~g~tpLh~A~~~~~------~~~~~~Ll~~g~~~~~--~~g~-t~L~~A~~~~-----~~~~~~~Ll~-~ga~ 470 (602)
..|+||||+|+..|+ .+++++|+++|+++|. ..|. ||||+|+..+ ..+++++|++ +|+|
T Consensus 73 ------~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad 146 (186)
T 3t8k_A 73 ------KEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQ 146 (186)
T ss_dssp ------TTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCC
T ss_pred ------CCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCC
Confidence 999999999999987 5678899999998887 6777 8999888844 3568888888 8999
Q ss_pred CCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCC
Q 038432 471 VDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANK 509 (602)
Q Consensus 471 ~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~ 509 (602)
+|.+|..|.||||+|+..|+.++|++|.++..+.+.+++
T Consensus 147 ~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~~~~~~~ 185 (186)
T 3t8k_A 147 LLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKEN 185 (186)
T ss_dssp TTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHHHHTCCC-
T ss_pred CcccCCCCCCHHHHHHHcCCHHHHHHHHHHHHHHhcccC
Confidence 999999999999999999999999988887666665553
No 85
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.95 E-value=1.1e-28 Score=235.87 Aligned_cols=156 Identities=15% Similarity=0.150 Sum_probs=112.9
Q ss_pred CCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCC
Q 038432 361 DSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAIS 440 (602)
Q Consensus 361 d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~ 440 (602)
+..|.||||.|+..|+.++++.|+++|++++.. ..|.||||.|+..|+.+++++|++.|+++
T Consensus 2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~------------------~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~ 63 (239)
T 1ycs_B 2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN------------------PLPLALLLDSSLEGEFDLVQRIIYEVDDP 63 (239)
T ss_dssp -----------------------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSC
T ss_pred CccccccCchhhhhhhHHHHHHHhccCCCcccC------------------chhhHHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 457999999999999999999999999999864 67899999999999999999999999999
Q ss_pred CC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCC-ChhhH
Q 038432 441 DP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEF-SSTNL 517 (602)
Q Consensus 441 ~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~-t~l~~ 517 (602)
+. ..|.||||+|+..|+.+++++|+++|+++|.+|.+|+||||+|+..|+.+++++|+++|+|++.+|..|. ||+|+
T Consensus 64 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~ 143 (239)
T 1ycs_B 64 SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADK 143 (239)
T ss_dssp CCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHH
T ss_pred CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHH
Confidence 87 7899999999999999999999999999999999999999999999999999999999999999999887 99999
Q ss_pred H--HHHHHHhhhceeeecc
Q 038432 518 N--DMLQKREIGHRITVHD 534 (602)
Q Consensus 518 a--~~~~~~~~~~~l~~~~ 534 (602)
| +..++.++++.|...+
T Consensus 144 a~~~~~g~~~~~~~Ll~~~ 162 (239)
T 1ycs_B 144 CEEMEEGYTQCSQFLYGVQ 162 (239)
T ss_dssp CCSSSTTCCCHHHHHHHHH
T ss_pred HHHhhhccHHHHHHHHHhh
Confidence 8 5666677776666554
No 86
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.94 E-value=8.8e-28 Score=213.54 Aligned_cols=142 Identities=20% Similarity=0.140 Sum_probs=118.3
Q ss_pred CCCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchh
Q 038432 326 DGDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYD 405 (602)
Q Consensus 326 ~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~ 405 (602)
..+..|.||||+|+..|+.+++++|++.|+++|.+|..|+||||+|+ .|+.+++++|+++|++++..|
T Consensus 7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d----------- 74 (156)
T 1bi7_B 7 SSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCAD----------- 74 (156)
T ss_dssp ---CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCC-----------
T ss_pred CCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcC-----------
Confidence 34667899999999999999999999999999999999999999985 999999999999999999998
Q ss_pred HHHHhhccCCc-HHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHH
Q 038432 406 IIILLDMNGNT-ALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAI 482 (602)
Q Consensus 406 ~~~~~~~~g~t-pLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpL 482 (602)
..|.| |||+|+..|+.+++++|+++|++++. ..|.||||+|+..|+.+++++|+++|++++.+|..|.||.
T Consensus 75 ------~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~ 148 (156)
T 1bi7_B 75 ------PATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAA 148 (156)
T ss_dssp ------TTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC--------------
T ss_pred ------CCCCcHHHHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCccc
Confidence 89999 99999999999999999999999987 7899999999999999999999999999999999999998
Q ss_pred HHH
Q 038432 483 EIA 485 (602)
Q Consensus 483 h~A 485 (602)
+-+
T Consensus 149 ~~~ 151 (156)
T 1bi7_B 149 EGP 151 (156)
T ss_dssp ---
T ss_pred ccC
Confidence 854
No 87
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.94 E-value=7.2e-28 Score=219.87 Aligned_cols=153 Identities=10% Similarity=0.080 Sum_probs=136.7
Q ss_pred CchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCCh----hHHHHHHhcCCC
Q 038432 364 GRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHH----SIFRILYHCTAI 439 (602)
Q Consensus 364 g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~----~~~~~Ll~~g~~ 439 (602)
+.++|+.|+..|+.+.++.+++.+. +..+ +..|+||||+|+.+|+. +++++|+++|++
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~~--~~~~----------------~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gad 67 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKGY--EDKE----------------SVLKSNILYDVLRNNNDEARYKISMFLINKGAD 67 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHSS--SCHH----------------HHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCC
T ss_pred cccHHHHHHHcCCHHHHHHHHhcCc--cccc----------------ccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCC
Confidence 5689999999999999999998764 3443 36799999999999975 599999999999
Q ss_pred CCC--CCcchhHHHHHhcCC------HHHHHHHHHcCCCCCCCCCCCc-CHHHHHHHcC-----cHHHHHHHHH-CCCCc
Q 038432 440 SDP--YTAGDLLCTAEKRND------MSVMEELVKYGLNVDSKDRHGR-TAIEIAMAEN-----NVEMVNFLVM-NGSDV 504 (602)
Q Consensus 440 ~~~--~~g~t~L~~A~~~~~------~~~~~~Ll~~ga~~n~~d~~g~-TpLh~A~~~~-----~~~iv~~Ll~-~ga~~ 504 (602)
+|. ..|+||||+|+..|+ .+++++|+++|+|+|.+|..|+ ||||+|+..+ +.+++++|++ +|+|+
T Consensus 68 vn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~ 147 (186)
T 3t8k_A 68 IKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQL 147 (186)
T ss_dssp SSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCT
T ss_pred CCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCC
Confidence 998 789999999999987 6789999999999999999999 9999999944 4679999999 99999
Q ss_pred ccCCCCCCChhhHHHHHHHHhhhceeeecc
Q 038432 505 VGANKCEFSSTNLNDMLQKREIGHRITVHD 534 (602)
Q Consensus 505 ~~~d~~g~t~l~~a~~~~~~~~~~~l~~~~ 534 (602)
+.+|..|.||||+|+..++.++++.|....
T Consensus 148 ~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~ 177 (186)
T 3t8k_A 148 LIKDKWGLTALEFVKRCQKPIALKMMEDYI 177 (186)
T ss_dssp TCCCTTSCCHHHHHHTTTCHHHHHHHHHHH
T ss_pred cccCCCCCCHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999999999988887776543
No 88
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.94 E-value=4.3e-26 Score=194.49 Aligned_cols=124 Identities=32% Similarity=0.528 Sum_probs=119.1
Q ss_pred CCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC
Q 038432 363 KGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP 442 (602)
Q Consensus 363 ~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~ 442 (602)
+|+||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|+++|++++.
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~-----------------~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~ 63 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKD-----------------KNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCC-----------------TTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcC-----------------CCCCcHHHHHHHcCcHHHHHHHHHcCCCCcc
Confidence 58999999999999999999999999999887 8999999999999999999999999999887
Q ss_pred --CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCC
Q 038432 443 --YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSD 503 (602)
Q Consensus 443 --~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~ 503 (602)
..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|||
T Consensus 64 ~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 64 KDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred cCCCCCcHHHHHHHcChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 6799999999999999999999999999999999999999999999999999999999986
No 89
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.94 E-value=1.1e-26 Score=201.26 Aligned_cols=122 Identities=14% Similarity=0.085 Sum_probs=118.0
Q ss_pred ccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCC-CcCHHHHHHHc
Q 038432 412 MNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRH-GRTAIEIAMAE 488 (602)
Q Consensus 412 ~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~-g~TpLh~A~~~ 488 (602)
..|.||||+|+..|+.+++++|+++|++++. ..|.||||+|+. |+.+++++|+++|+++|.+|.. |+||||+|+..
T Consensus 10 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~ 88 (136)
T 1d9s_A 10 GSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRPVHDAARE 88 (136)
T ss_dssp CCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCHHHHHHHH
T ss_pred CCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCHHHHHHHc
Confidence 9999999999999999999999999999987 789999999999 9999999999999999999999 99999999999
Q ss_pred CcHHHHHHHHHCCCCcccCCCCCCChhhHHHHHHHHhhhceeeecc
Q 038432 489 NNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRITVHD 534 (602)
Q Consensus 489 ~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~~~~~l~~~~ 534 (602)
|+.+++++|+++|++++.+|..|.||||+|+..++.++++.|+.++
T Consensus 89 ~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~G 134 (136)
T 1d9s_A 89 GFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAAT 134 (136)
T ss_dssp TCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999998887665
No 90
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.93 E-value=3.8e-26 Score=197.81 Aligned_cols=121 Identities=25% Similarity=0.330 Sum_probs=75.7
Q ss_pred CchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC-
Q 038432 364 GRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP- 442 (602)
Q Consensus 364 g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~- 442 (602)
|.||||+|+..|+.+++++|+++|++++..| ..|.||||+|+..|+.+++++|+++|++++.
T Consensus 14 ~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~-----------------~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~ 76 (136)
T 2jab_A 14 LGKKLLEAARAGQDDEVRILMANGADVNAKD-----------------EYGLTPLYLATAHGHLEIVEVLLKNGADVNAV 76 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCTTCCC-----------------TTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC
T ss_pred ccHHHHHHHHhCCHHHHHHHHHcCCCCCCcC-----------------CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcC
Confidence 4444444444444444444444444444444 4444444444444444444444444444443
Q ss_pred -CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCC
Q 038432 443 -YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNG 501 (602)
Q Consensus 443 -~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~g 501 (602)
..|.||||+|+..|+.+++++|+++|++++.+|.+|.||||+|+..|+.+++++|+++|
T Consensus 77 d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 77 DAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp CTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 34555555555566666677777888888888999999999999999999999999876
No 91
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.93 E-value=4.5e-28 Score=245.32 Aligned_cols=153 Identities=16% Similarity=0.076 Sum_probs=111.9
Q ss_pred CCchhhhHhhhcCcHHHHHHHHhcCCCC---CCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhH
Q 038432 330 NMSVNLLTVASTGNAAFLDELLKARLDP---DIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDI 406 (602)
Q Consensus 330 ~g~t~L~~A~~~g~~~~~~~Ll~~g~~~---n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~ 406 (602)
++.||||.||..|+.+++++|++.|+.. +..+..|.||||+||..|+.++|++|+++|++++..+
T Consensus 91 ~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~------------ 158 (376)
T 2aja_A 91 KSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAM------------ 158 (376)
T ss_dssp CHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHH------------
T ss_pred CcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccc------------
Confidence 4468888888888888888888887632 2345567888888888888888888888887643222
Q ss_pred HHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC----CCcchhHHHHH-hcCCHHHHHHHHHcCCCCCCCCCCCcCH
Q 038432 407 IILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP----YTAGDLLCTAE-KRNDMSVMEELVKYGLNVDSKDRHGRTA 481 (602)
Q Consensus 407 ~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~----~~g~t~L~~A~-~~~~~~~~~~Ll~~ga~~n~~d~~g~Tp 481 (602)
..+.+ .||||+|+..|+.+++++|+++|++++. ..|.||||+|+ ..|+.+++++|+++|++ |.||
T Consensus 159 --i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~-------~~ta 228 (376)
T 2aja_A 159 --IQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM-------LAYA 228 (376)
T ss_dssp --HSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH-------HHHH
T ss_pred --cCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCCc-------cchH
Confidence 00122 7888888888888888888888887542 56778888888 88888888888887642 7788
Q ss_pred HHHHHHcCcHHHHHHHHHCCCCc
Q 038432 482 IEIAMAENNVEMVNFLVMNGSDV 504 (602)
Q Consensus 482 Lh~A~~~~~~~iv~~Ll~~ga~~ 504 (602)
||+|+..|+.+++++|+++|+++
T Consensus 229 L~~Aa~~g~~evv~lL~~~ga~~ 251 (376)
T 2aja_A 229 EIHEFEYGEKYVNPFIARHVNRL 251 (376)
T ss_dssp HHCTTTTTTTTHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHhcCccc
Confidence 88888888888888888777654
No 92
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.93 E-value=2e-26 Score=199.88 Aligned_cols=133 Identities=23% Similarity=0.321 Sum_probs=94.6
Q ss_pred CCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHH
Q 038432 354 RLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRIL 433 (602)
Q Consensus 354 g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L 433 (602)
|+|+ .+|..|+||||+|+..|+.+++++|+++|++++..| ..|.||||+|+..|
T Consensus 1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~-----------------~~g~t~L~~A~~~~-------- 54 (137)
T 3c5r_A 1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKD-----------------HAGWTPLHEACNHG-------- 54 (137)
T ss_dssp ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCC-----------------TTSCCHHHHHHHTT--------
T ss_pred CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCC-----------------CCCCCHHHHHHHcC--------
Confidence 4555 556666666666666666666666666666666665 55555555555554
Q ss_pred HhcCCCCCCCCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCC
Q 038432 434 YHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFS 513 (602)
Q Consensus 434 l~~g~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t 513 (602)
+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.|
T Consensus 55 -----------------------~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t 111 (137)
T 3c5r_A 55 -----------------------HLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLR 111 (137)
T ss_dssp -----------------------CHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred -----------------------CHHHHHHHHHcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCC
Confidence 455566666777778888888888999888888888888888888888888888899
Q ss_pred hhhHHHHHHHHhhhceeeeccC
Q 038432 514 STNLNDMLQKREIGHRITVHDD 535 (602)
Q Consensus 514 ~l~~a~~~~~~~~~~~l~~~~~ 535 (602)
|+|+|+..+..+++..+.....
T Consensus 112 pl~~A~~~~~~~~l~~l~~~~~ 133 (137)
T 3c5r_A 112 PVDYTDDESMKSLLLLPEKNES 133 (137)
T ss_dssp GGGGCCCHHHHHHHSCC-----
T ss_pred HHHHHhhccHHHHHhhcccccc
Confidence 9998888888888887776553
No 93
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.93 E-value=7.2e-26 Score=196.39 Aligned_cols=102 Identities=17% Similarity=0.119 Sum_probs=89.7
Q ss_pred CCCCCC-CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChh
Q 038432 437 TAISDP-YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSST 515 (602)
Q Consensus 437 g~~~~~-~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l 515 (602)
|+|+.. ..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.|||
T Consensus 1 G~d~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L 80 (137)
T 3c5r_A 1 GIDPFTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPL 80 (137)
T ss_dssp ---CCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHH
T ss_pred CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHH
Confidence 344433 6777888888888888889999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhhceeeeccCCCc
Q 038432 516 NLNDMLQKREIGHRITVHDDNST 538 (602)
Q Consensus 516 ~~a~~~~~~~~~~~l~~~~~~~~ 538 (602)
|+|+..++.++++.|+..+.+..
T Consensus 81 ~~A~~~~~~~~v~~Ll~~ga~~~ 103 (137)
T 3c5r_A 81 HDAAKNGHVDIVKLLLSYGASRN 103 (137)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCTT
T ss_pred HHHHHcCCHHHHHHHHHcCCCCC
Confidence 99999999999999998765543
No 94
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.92 E-value=9.4e-27 Score=212.79 Aligned_cols=138 Identities=24% Similarity=0.210 Sum_probs=105.5
Q ss_pred CCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCC
Q 038432 361 DSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAIS 440 (602)
Q Consensus 361 d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~ 440 (602)
+..|.||||+|+..|+.++++.|++ |++++..| ..|.||||+|+..|+.+++++|+++|+++
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d-----------------~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~ 102 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVD-----------------ENGRTALLFVAGLGSDKCVRLLAEAGADL 102 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCC-----------------TTSCCHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcC-----------------CCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 4467778888888888888887777 77777776 77778888888777777777777777777
Q ss_pred CC---CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhH
Q 038432 441 DP---YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNL 517 (602)
Q Consensus 441 ~~---~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~ 517 (602)
+. ..|+||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+..++. ..+.+|+++
T Consensus 103 ~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~-----------------~~~~~~l~~ 165 (183)
T 3deo_A 103 DHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKT-----------------TPKGNPMQF 165 (183)
T ss_dssp TCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHT-----------------CCCCSHHHH
T ss_pred CcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccC-----------------cccccHHHH
Confidence 65 4577888888888888888888888888888888888888888774432 456788888
Q ss_pred HHHHHHHhhhceeeec
Q 038432 518 NDMLQKREIGHRITVH 533 (602)
Q Consensus 518 a~~~~~~~~~~~l~~~ 533 (602)
|+..+..++++.|..+
T Consensus 166 a~~~~~~~i~~~L~~~ 181 (183)
T 3deo_A 166 GRRIGLEKVINVLEGQ 181 (183)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHcCHHHHHHHHHHh
Confidence 8888888877776543
No 95
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.92 E-value=3.9e-25 Score=191.45 Aligned_cols=125 Identities=26% Similarity=0.263 Sum_probs=118.2
Q ss_pred CCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhH
Q 038432 327 GDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDI 406 (602)
Q Consensus 327 ~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~ 406 (602)
....+.||||.|+..|+.+++++|++.|+++|.+|..|.||||+|+..|+.+++++|+++|++++..|
T Consensus 10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d------------ 77 (136)
T 2jab_A 10 HGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVD------------ 77 (136)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCC------------
T ss_pred ccccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCC------------
Confidence 34567899999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcC
Q 038432 407 IILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYG 468 (602)
Q Consensus 407 ~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~g 468 (602)
..|.||||+|+..|+.+++++|+++|++++. ..|.||||+|+..|+.+++++|+++|
T Consensus 78 -----~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 78 -----AIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp -----TTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred -----CCCCCHHHHHHHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 8999999999999999999999999999987 78999999999999999999999986
No 96
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.92 E-value=6.8e-25 Score=187.02 Aligned_cols=124 Identities=31% Similarity=0.419 Sum_probs=120.2
Q ss_pred CCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHH
Q 038432 330 NMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIIL 409 (602)
Q Consensus 330 ~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~ 409 (602)
+|.||||.|+..|+.+++++|++.|++++..|..|.||||+|+..|+.+++++|+++|++++..+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~--------------- 65 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD--------------- 65 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCC---------------
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccC---------------
Confidence 58999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCC
Q 038432 410 LDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLN 470 (602)
Q Consensus 410 ~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~ 470 (602)
..|.||||+|+..|+.+++++|+++|++++. ..|.||||+|+..|+.+++++|+++|||
T Consensus 66 --~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 66 --KNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp --TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred --CCCCcHHHHHHHcChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 8999999999999999999999999999987 6899999999999999999999999986
No 97
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.92 E-value=2.5e-27 Score=239.77 Aligned_cols=206 Identities=12% Similarity=0.014 Sum_probs=161.7
Q ss_pred HHHHhhhhhhcccccccccccCCC-----CCCCCCchhhhHhhhcCcHHHHHHHHhcCCCC---CCCCCCCchHHHHHHh
Q 038432 302 NFLQQHKKLKDLNIGDLIAESGEE-----DGDPNMSVNLLTVASTGNAAFLDELLKARLDP---DIGDSKGRTPLHIAAS 373 (602)
Q Consensus 302 ~ll~~~~~~~~~~~~~~l~~~~~~-----~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~---n~~d~~g~t~Lh~A~~ 373 (602)
+.+..+...++.+..+.|++.+.. ..+..|.||||+||..|+.+++++|++.|+++ +..+.+ .||||+||.
T Consensus 94 T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~ 172 (376)
T 2aja_A 94 VICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAE 172 (376)
T ss_dssp HHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHH
Confidence 556778888888999988887752 23456889999999999999999999999763 333333 999999999
Q ss_pred cCChHHHHHHHhcccCCCc--hhhHHHHhccchhHHHHhhccCCcHHHHHH-HcCChhHHHHHHhcCCCCCCCCcchhHH
Q 038432 374 KGHEECVLVLLKHASNVHL--RDYIIFMYNLSYDIIILLDMNGNTALWEAI-SSKHHSIFRILYHCTAISDPYTAGDLLC 450 (602)
Q Consensus 374 ~g~~~~v~~Ll~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~-~~~~~~~~~~Ll~~g~~~~~~~g~t~L~ 450 (602)
.|+.++|++|+++|++++. .| ..|.||||+|+ ..|+.+++++|+++|+ .|.||||
T Consensus 173 ~G~~eiv~~Ll~~ga~~~~~~~d-----------------~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga-----~~~taL~ 230 (376)
T 2aja_A 173 NGHLHVLNRLCELAPTEATAMIQ-----------------AENYYAFRWAAVGRGHHNVINFLLDCPV-----MLAYAEI 230 (376)
T ss_dssp TTCHHHHHHHHHSCGGGHHHHHH-----------------HHHHHHHHHHHSTTCCHHHHHHHTTSHH-----HHHHHHH
T ss_pred CCCHHHHHHHHHcCCccchhccC-----------------CCCCCHHHHHHHHCCCHHHHHHHHhCCC-----ccchHHH
Confidence 9999999999999999887 66 78999999999 9999999999999886 3899999
Q ss_pred HHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCc---------------------------HHHHHHHHHCCC-
Q 038432 451 TAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENN---------------------------VEMVNFLVMNGS- 502 (602)
Q Consensus 451 ~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~---------------------------~~iv~~Ll~~ga- 502 (602)
.|+..|+.+++++|+++|++++..| ++++.|+..|+ .+.+++|++.++
T Consensus 231 ~Aa~~g~~evv~lL~~~ga~~~~~~----~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~v 306 (376)
T 2aja_A 231 HEFEYGEKYVNPFIARHVNRLKEMH----DAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGI 306 (376)
T ss_dssp CTTTTTTTTHHHHHHHHHHHHHHHH----TTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTT
T ss_pred HHHHCCCHHHHHHHHhcCccccccc----HHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhh
Confidence 9999999999999999998876543 23444443333 445566665321
Q ss_pred ----CcccCCCCCCChhhHHHHHHHHhhhceeeecc
Q 038432 503 ----DVVGANKCEFSSTNLNDMLQKREIGHRITVHD 534 (602)
Q Consensus 503 ----~~~~~d~~g~t~l~~a~~~~~~~~~~~l~~~~ 534 (602)
+.....+.+.||||+|+..|+.++++.|+..+
T Consensus 307 k~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lLl~~~ 342 (376)
T 2aja_A 307 KALAPTATIPGDANELLRLALRLGNQGACALLLSIP 342 (376)
T ss_dssp GGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTSH
T ss_pred hhhhccCCCCCCccHHHHHHHHcCcHHHHHHHHcCh
Confidence 11122235678999999999999999998754
No 98
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.92 E-value=2.6e-26 Score=219.95 Aligned_cols=166 Identities=22% Similarity=0.164 Sum_probs=121.2
Q ss_pred CCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHH
Q 038432 330 NMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIIL 409 (602)
Q Consensus 330 ~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~ 409 (602)
.+.+++..++..|+.+.+..+...+.++ +..|.||||+||..|+.+++++|++ |+++|..|
T Consensus 14 ~~~~~~l~~~~~g~~~~~~~~~~~~~~~---~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d--------------- 74 (244)
T 3ui2_A 14 EGAMEYLIEWKDGHSPSWVPSSYIAADV---VSEYETPWWTAARKADEQALSQLLE-DRDVDAVD--------------- 74 (244)
T ss_dssp TTEEEEEEEESSCCCCEEEEGGGSCHHH---HHHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBC---------------
T ss_pred CCccHHHHHHHcCCCccccccccccccc---ccCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcC---------------
Confidence 3456666666666655544443333322 3467788888888888888888888 78888776
Q ss_pred hhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC---CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHH
Q 038432 410 LDMNGNTALWEAISSKHHSIFRILYHCTAISDP---YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAM 486 (602)
Q Consensus 410 ~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~---~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~ 486 (602)
..|.||||+|+..|+.+++++|+++|++++. ..|.||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+
T Consensus 75 --~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~ 152 (244)
T 3ui2_A 75 --ENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAR 152 (244)
T ss_dssp --TTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred --CCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Confidence 7788888888888888888888888887765 34778888888888888888888888888888888888888887
Q ss_pred HcCcHHHHHHHHHCCCCcccCCCCCCChhhHHHHHHHHhhhceeeec
Q 038432 487 AENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRITVH 533 (602)
Q Consensus 487 ~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~~~~~l~~~ 533 (602)
..+ .+..+.|||++|+..++.++++.|...
T Consensus 153 ~~~-----------------~~~~~~~~l~~a~~~g~~~iv~~L~~~ 182 (244)
T 3ui2_A 153 EIL-----------------KTTPKGNPMQFGRRIGLEKVINVLEGQ 182 (244)
T ss_dssp HHH-----------------TTCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-----------------hccCCCCHHHHHHHcChHHHHHHHHHh
Confidence 522 225678888888888888777776644
No 99
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.91 E-value=6e-25 Score=200.78 Aligned_cols=139 Identities=22% Similarity=0.195 Sum_probs=128.6
Q ss_pred CCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHH
Q 038432 328 DPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDII 407 (602)
Q Consensus 328 ~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~ 407 (602)
+.+|.||||.|+..|+.++++.|++ |+++|.+|..|+||||+|+..|+.+++++|+++|++++..+
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~------------- 106 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRD------------- 106 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCC-------------
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCC-------------
Confidence 3478999999999999999999999 99999999999999999999999999999999999999886
Q ss_pred HHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHH
Q 038432 408 ILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIA 485 (602)
Q Consensus 408 ~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A 485 (602)
+..|.||||+|+..|+.+++++|+++|++++. ..|.||||+|+..++. ..+.|||++|
T Consensus 107 ---~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~-----------------~~~~~~l~~a 166 (183)
T 3deo_A 107 ---MRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKT-----------------TPKGNPMQFG 166 (183)
T ss_dssp ---SSSSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHT-----------------CCCCSHHHHH
T ss_pred ---CCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccC-----------------cccccHHHHH
Confidence 47899999999999999999999999999987 7899999999875432 4578999999
Q ss_pred HHcCcHHHHHHHHHC
Q 038432 486 MAENNVEMVNFLVMN 500 (602)
Q Consensus 486 ~~~~~~~iv~~Ll~~ 500 (602)
+..|+.+++++|.++
T Consensus 167 ~~~~~~~i~~~L~~~ 181 (183)
T 3deo_A 167 RRIGLEKVINVLEGQ 181 (183)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHcCHHHHHHHHHHh
Confidence 999999999999875
No 100
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.91 E-value=6.5e-25 Score=210.26 Aligned_cols=142 Identities=21% Similarity=0.188 Sum_probs=130.8
Q ss_pred CCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHH
Q 038432 329 PNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIII 408 (602)
Q Consensus 329 ~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~ 408 (602)
.+|.||||.|+..|+.++++.|++ |+++|.+|..|+||||+||..|+.++|++|+++|+++|..+
T Consensus 43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~-------------- 107 (244)
T 3ui2_A 43 SEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRD-------------- 107 (244)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCC--------------
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCC--------------
Confidence 467899999999999999999999 99999999999999999999999999999999999999886
Q ss_pred HhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHH
Q 038432 409 LLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAM 486 (602)
Q Consensus 409 ~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~ 486 (602)
+..|.||||+|+..|+.+++++|+++|++++. ..|.||||+|+..++ +..+.||||+|+
T Consensus 108 --~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~-----------------~~~~~~~l~~a~ 168 (244)
T 3ui2_A 108 --MRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILK-----------------TTPKGNPMQFGR 168 (244)
T ss_dssp --SSSCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHT-----------------TCCCSSHHHHHH
T ss_pred --CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHh-----------------ccCCCCHHHHHH
Confidence 46799999999999999999999999999987 889999999986332 256899999999
Q ss_pred HcCcHHHHHHHHHCCCCc
Q 038432 487 AENNVEMVNFLVMNGSDV 504 (602)
Q Consensus 487 ~~~~~~iv~~Ll~~ga~~ 504 (602)
..|+.+++++|++++.+.
T Consensus 169 ~~g~~~iv~~L~~~~~~~ 186 (244)
T 3ui2_A 169 RIGLEKVINVLEGQVFEY 186 (244)
T ss_dssp HHHHHHHHHHHHHHHEEE
T ss_pred HcChHHHHHHHHHhcccc
Confidence 999999999999976654
No 101
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.91 E-value=1.6e-24 Score=213.69 Aligned_cols=140 Identities=14% Similarity=0.074 Sum_probs=124.4
Q ss_pred CCCchHHHHHHhcCChHHHHHHHhcccCCCc------hhhHHHHhccchhHHHHhhccCCcHHHHHHHc---CChhHHHH
Q 038432 362 SKGRTPLHIAASKGHEECVLVLLKHASNVHL------RDYIIFMYNLSYDIIILLDMNGNTALWEAISS---KHHSIFRI 432 (602)
Q Consensus 362 ~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~------~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~---~~~~~~~~ 432 (602)
..+.++||.|+..|+.+.++.|++.|++++. .+ ..|.||||+|+.. |+.+++++
T Consensus 149 ~~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~-----------------~~g~t~Lh~A~~~~~~~~~~iv~~ 211 (301)
T 2b0o_E 149 TPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQ-----------------APEELVLHLAVKVANQASLPLVDF 211 (301)
T ss_dssp C-CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSC-----------------SCEECHHHHHHHTCCTTTHHHHHH
T ss_pred CchHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccC-----------------CCCccHHHHHHHhcccCcHHHHHH
Confidence 3456889999999999999999999999987 45 8899999999997 89999999
Q ss_pred HHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCC
Q 038432 433 LYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKC 510 (602)
Q Consensus 433 Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~ 510 (602)
|+++|++++. ..|+||||+|+..|+.+++++|+++|+|++.+|.+|.||||+|+..|+.+++++|+++|++ .
T Consensus 212 Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~ 285 (301)
T 2b0o_E 212 IIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG------T 285 (301)
T ss_dssp HHHHSSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------T
T ss_pred HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------C
Confidence 9999999987 7899999999999999999999999999999999999999999999999999999999987 5
Q ss_pred CCChhhHHHHHHHH
Q 038432 511 EFSSTNLNDMLQKR 524 (602)
Q Consensus 511 g~t~l~~a~~~~~~ 524 (602)
|.||||+|+..|+.
T Consensus 286 g~tpLh~A~~~g~~ 299 (301)
T 2b0o_E 286 FAFPLHVDYSWVIS 299 (301)
T ss_dssp TSSCCC--------
T ss_pred CCChhHHHHhcCCc
Confidence 89999999987764
No 102
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.91 E-value=2.3e-24 Score=183.04 Aligned_cols=116 Identities=15% Similarity=0.135 Sum_probs=107.1
Q ss_pred hccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHc
Q 038432 411 DMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAE 488 (602)
Q Consensus 411 ~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~ 488 (602)
+..|.||||+|+..|+.+++++|++.|++++. ..|+||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~ 83 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYE 83 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc
Confidence 36789999999999999999999999999987 6899999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHCCCCcccCCCCCCChhhHHHHHHHHhh
Q 038432 489 NNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREI 526 (602)
Q Consensus 489 ~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~~ 526 (602)
|+.+++++|+++|++++.+|..|.||+|+|...+..++
T Consensus 84 ~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~l 121 (123)
T 3aaa_C 84 GHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKAL 121 (123)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCCHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCCHHHHHH
Confidence 99999999999999999999999999999965554443
No 103
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.91 E-value=5e-25 Score=208.08 Aligned_cols=133 Identities=19% Similarity=0.202 Sum_probs=69.9
Q ss_pred CCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhc-CCCCC
Q 038432 363 KGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHC-TAISD 441 (602)
Q Consensus 363 ~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~-g~~~~ 441 (602)
.|.||||+||..|+.+++++|++.|++++..| ..|.||||+|+..|+.+++++|+++ |++++
T Consensus 72 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-----------------~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~ 134 (222)
T 3ehr_A 72 SIDNPLHEAAKRGNLSWLRECLDNRVGVNGLD-----------------KAGSTALYWACHGGHKDIVEMLFTQPNIELN 134 (222)
T ss_dssp EESCHHHHHHHHTCHHHHHHHHHTTCCTTCCC-----------------TTSCCHHHHHHHTTCHHHHHHHTTSTTCCCC
T ss_pred ccccccccccccCcHHHHHHHHhCCCCccccC-----------------CCCCCHHHHHHHcCCHHHHHHHHcCCCCCcc
Confidence 34444444444444444444444444444443 4444444444444444444444444 44443
Q ss_pred C--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCC
Q 038432 442 P--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEF 512 (602)
Q Consensus 442 ~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~ 512 (602)
. ..|.||||+|+..|+.+++++|+++|++++.+|.+|.||||+|+..++.++++.|++.|++.+.+|..|.
T Consensus 135 ~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~~~ 207 (222)
T 3ehr_A 135 QQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDY 207 (222)
T ss_dssp CCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC-----------------
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccchhhh
Confidence 3 3445555555555666667777778888888889999999999999999999999999988887776654
No 104
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.90 E-value=3e-24 Score=211.72 Aligned_cols=139 Identities=15% Similarity=0.096 Sum_probs=124.0
Q ss_pred CCchhhhHhhhcCcHHHHHHHHhcCCCCCC------CCCCCchHHHHHHhc---CChHHHHHHHhcccCCCchhhHHHHh
Q 038432 330 NMSVNLLTVASTGNAAFLDELLKARLDPDI------GDSKGRTPLHIAASK---GHEECVLVLLKHASNVHLRDYIIFMY 400 (602)
Q Consensus 330 ~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~------~d~~g~t~Lh~A~~~---g~~~~v~~Ll~~g~~~~~~~~~~~~~ 400 (602)
.+.++|+.|+..|+.+.++.|++.|++++. .|..|+||||+|+.. |+.+++++|+++|+++|..|
T Consensus 150 ~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d------ 223 (301)
T 2b0o_E 150 PEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKA------ 223 (301)
T ss_dssp -CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCC------
T ss_pred chHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCC------
Confidence 346789999999999999999999999998 699999999999997 89999999999999999998
Q ss_pred ccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCC
Q 038432 401 NLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHG 478 (602)
Q Consensus 401 ~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g 478 (602)
..|.||||+|+..|+.+++++|+++|++++. ..|.||||+|+..|+.+++++|+++|++ .|
T Consensus 224 -----------~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g 286 (301)
T 2b0o_E 224 -----------ADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG------TF 286 (301)
T ss_dssp -----------TTCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------TT
T ss_pred -----------CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------CC
Confidence 9999999999999999999999999999987 7899999999999999999999999986 58
Q ss_pred cCHHHHHHHcCcH
Q 038432 479 RTAIEIAMAENNV 491 (602)
Q Consensus 479 ~TpLh~A~~~~~~ 491 (602)
.||||+|+..|+.
T Consensus 287 ~tpLh~A~~~g~~ 299 (301)
T 2b0o_E 287 AFPLHVDYSWVIS 299 (301)
T ss_dssp SSCCC--------
T ss_pred CChhHHHHhcCCc
Confidence 9999999998864
No 105
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.90 E-value=4e-24 Score=181.57 Aligned_cols=115 Identities=18% Similarity=0.104 Sum_probs=76.6
Q ss_pred CCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCC
Q 038432 362 SKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISD 441 (602)
Q Consensus 362 ~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~ 441 (602)
..|.||||+|+..|+.+++++|++.|++++..| ..|.||||+|+..|+.+++++|+++|++++
T Consensus 5 ~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~-----------------~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~ 67 (123)
T 3aaa_C 5 SMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTL-----------------EGGRKPLHYAADCGQLEILEFLLLKGADIN 67 (123)
T ss_dssp --CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCC-----------------TTSSCHHHHHHHTTCHHHHHHHHTTTCCTT
T ss_pred cccchHHHHHHHcCCHHHHHHHHHcCCCcCccC-----------------CCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 445566666666666666666666666666555 556666666666666666666666666555
Q ss_pred C--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHH
Q 038432 442 P--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEM 493 (602)
Q Consensus 442 ~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~i 493 (602)
. ..|+||||+|+..|+.+++++|+++|++++.+|.+|.||||+|+..+..++
T Consensus 68 ~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~l 121 (123)
T 3aaa_C 68 APDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKAL 121 (123)
T ss_dssp CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCCHHHHHH
T ss_pred cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCCHHHHHH
Confidence 4 456666666667777777888888888999999999999999954444433
No 106
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.89 E-value=2.8e-23 Score=196.03 Aligned_cols=125 Identities=14% Similarity=0.107 Sum_probs=115.0
Q ss_pred hccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHc-CCCCCCCCCCCcCHHHHHHH
Q 038432 411 DMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKY-GLNVDSKDRHGRTAIEIAMA 487 (602)
Q Consensus 411 ~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~-ga~~n~~d~~g~TpLh~A~~ 487 (602)
+..|.||||+|+..|+.+++++|++.|++++. ..|.||||+|+..|+.+++++|+++ |+++|.+|..|+||||+|+.
T Consensus 70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~ 149 (222)
T 3ehr_A 70 AESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAW 149 (222)
T ss_dssp EEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHH
T ss_pred ccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHH
Confidence 48899999999999999999999999999986 7899999999999999999999998 99999999999999999999
Q ss_pred cCcHHHHHHHHHCCCCcccCCCCCCChhhHHHHHHHHhhhceeeeccC
Q 038432 488 ENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRITVHDD 535 (602)
Q Consensus 488 ~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~~~~~l~~~~~ 535 (602)
.|+.+++++|+++|++++.+|..|.||||+|+..+..++++.+...+.
T Consensus 150 ~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~ 197 (222)
T 3ehr_A 150 KGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDA 197 (222)
T ss_dssp HTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC-------
T ss_pred cCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccch
Confidence 999999999999999999999999999999999999999999887763
No 107
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.88 E-value=1.5e-22 Score=214.47 Aligned_cols=135 Identities=16% Similarity=0.080 Sum_probs=117.1
Q ss_pred CCchHHHHHHhcCChHHHHHHHhcccCCCch------hhHHHHhccchhHHHHhhccCCcHHHHHHH---cCChhHHHHH
Q 038432 363 KGRTPLHIAASKGHEECVLVLLKHASNVHLR------DYIIFMYNLSYDIIILLDMNGNTALWEAIS---SKHHSIFRIL 433 (602)
Q Consensus 363 ~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~------~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~---~~~~~~~~~L 433 (602)
...+.||.|+..|+.++|+.|++.|+++|.. + ..|.||||+||. .|+.+++++|
T Consensus 131 ~~~~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~-----------------~~g~t~Lh~A~~~a~~g~~~~v~~L 193 (497)
T 3lvq_E 131 PEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQ-----------------APEELVLHLAVKVANQASLPLVDFI 193 (497)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSC-----------------CSCBCHHHHHHHTCCTTTHHHHHHH
T ss_pred ccHHHHHHHHhccCHHHHHHHHhhcccccCCCCCcccc-----------------cccchHHHHHHHhcccccHHHHHHH
Confidence 3457899999999999999999999999977 5 889999999977 8999999999
Q ss_pred HhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCC
Q 038432 434 YHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCE 511 (602)
Q Consensus 434 l~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g 511 (602)
+++|+++|. ..|+||||+|+..|+.+++++|+++|||+|.+|.+|+||||+|+..|+.+++++|+++|||++..+..+
T Consensus 194 l~~ga~vn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~h~ 273 (497)
T 3lvq_E 194 IQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFAFPLHV 273 (497)
T ss_dssp HHHSCCTTCCCSSSCCHHHHHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC---------
T ss_pred HHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCCCccee
Confidence 999999998 789999999999999999999999999999999999999999999999999999999999998754443
Q ss_pred CCh
Q 038432 512 FSS 514 (602)
Q Consensus 512 ~t~ 514 (602)
.++
T Consensus 274 ~~~ 276 (497)
T 3lvq_E 274 DYS 276 (497)
T ss_dssp ---
T ss_pred ecc
Confidence 333
No 108
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.87 E-value=2e-22 Score=203.06 Aligned_cols=146 Identities=18% Similarity=0.247 Sum_probs=100.0
Q ss_pred CCCCchhhhHhhhc-CcHHHHHHHHhcCCCCCCCC--CCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccch
Q 038432 328 DPNMSVNLLTVAST-GNAAFLDELLKARLDPDIGD--SKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSY 404 (602)
Q Consensus 328 ~~~g~t~L~~A~~~-g~~~~~~~Ll~~g~~~n~~d--~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~ 404 (602)
...+.|+||.|+.. |+.++++.|++.|+++|..+ ..|.||||+|+..|+.++|++|+++|+++|..|
T Consensus 196 ~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d---------- 265 (368)
T 3jue_A 196 SLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQAD---------- 265 (368)
T ss_dssp -CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC----------
T ss_pred cCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCC----------
Confidence 44567899999998 99999999999999999888 789999999999999999999999999999887
Q ss_pred hHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCCCCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHH
Q 038432 405 DIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEI 484 (602)
Q Consensus 405 ~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~ 484 (602)
..|.||||+|+..|+.++ +++|+++|++++.+|.+|.||||+
T Consensus 266 -------~~G~TpLh~A~~~g~~~~-------------------------------v~~LL~~Gad~~~~d~~G~TpL~~ 307 (368)
T 3jue_A 266 -------SAGRGPLHHATILGHTGL-------------------------------ACLFLKRGADLGARDSEGRDPLTI 307 (368)
T ss_dssp -------TTSCCHHHHHHHHTCHHH-------------------------------HHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred -------CCCCCHHHHHHHcCcHHH-------------------------------HHHHHHCcCCCCCcCCCCCCHHHH
Confidence 778888888877766655 455555666666677777777777
Q ss_pred HHHcCcHHHHHHHHHCC---CCcccCCCCCCChhhHHHHH
Q 038432 485 AMAENNVEMVNFLVMNG---SDVVGANKCEFSSTNLNDML 521 (602)
Q Consensus 485 A~~~~~~~iv~~Ll~~g---a~~~~~d~~g~t~l~~a~~~ 521 (602)
|+..++.+++++|++.| ++....+..+.|+++++...
T Consensus 308 A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~ 347 (368)
T 3jue_A 308 AMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDF 347 (368)
T ss_dssp HHHTTCHHHHHHHHHHHC----------------------
T ss_pred HHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHH
Confidence 77777777777777643 34445555666777666544
No 109
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.87 E-value=1.5e-21 Score=190.15 Aligned_cols=129 Identities=15% Similarity=0.068 Sum_probs=115.7
Q ss_pred chHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHc---CChhHHHHHHhcCCCCC
Q 038432 365 RTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISS---KHHSIFRILYHCTAISD 441 (602)
Q Consensus 365 ~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~---~~~~~~~~Ll~~g~~~~ 441 (602)
.++|+.|+..|+.+.++.+++.|++++..- .++..+..|.||||+|+.. |+.+++++|+++|++++
T Consensus 131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~-----------~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in 199 (278)
T 1dcq_A 131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKI-----------PLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLD 199 (278)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTSBC-----------CCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTT
T ss_pred hhhhhhHhhhcccHHHHHHHHhhcchhhhc-----------cccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCcc
Confidence 578999999999999999999999965330 0001127899999999999 89999999999999998
Q ss_pred C--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCc
Q 038432 442 P--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDV 504 (602)
Q Consensus 442 ~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~ 504 (602)
. ..|+||||+|+..|+.+++++|+++|+|+|.+|.+|.||||+|+..|+.+++++|+++|++.
T Consensus 200 ~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~ 264 (278)
T 1dcq_A 200 KQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR 264 (278)
T ss_dssp CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 7 78999999999999999999999999999999999999999999999999999999999854
No 110
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.87 E-value=2.8e-22 Score=202.02 Aligned_cols=122 Identities=15% Similarity=0.125 Sum_probs=104.0
Q ss_pred cCCcHHHHHHHc-CChhHHHHHHhcCCCCCC----CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHH
Q 038432 413 NGNTALWEAISS-KHHSIFRILYHCTAISDP----YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMA 487 (602)
Q Consensus 413 ~g~tpLh~A~~~-~~~~~~~~Ll~~g~~~~~----~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~ 487 (602)
.+.||||.|+.. |+.++++.|+++|++++. ..|.||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+.
T Consensus 198 ~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~ 277 (368)
T 3jue_A 198 HPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATI 277 (368)
T ss_dssp CHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred CCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence 345666666666 666666666666666654 356777777788888888999999999999999999999999999
Q ss_pred cCcHHHHHHHHHCCCCcccCCCCCCChhhHHHHHHHHhhhceeeecc
Q 038432 488 ENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRITVHD 534 (602)
Q Consensus 488 ~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~~~~~l~~~~ 534 (602)
.|+.+++++|+++|+|++.+|.+|.||||+|+..++.+++++|...+
T Consensus 278 ~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~ 324 (368)
T 3jue_A 278 LGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAK 324 (368)
T ss_dssp HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999998665
No 111
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.87 E-value=6.9e-22 Score=209.39 Aligned_cols=134 Identities=16% Similarity=0.137 Sum_probs=117.0
Q ss_pred CchhhhHhhhcCcHHHHHHHHhcCCCCCCC------CCCCchHHHHHHh---cCChHHHHHHHhcccCCCchhhHHHHhc
Q 038432 331 MSVNLLTVASTGNAAFLDELLKARLDPDIG------DSKGRTPLHIAAS---KGHEECVLVLLKHASNVHLRDYIIFMYN 401 (602)
Q Consensus 331 g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~------d~~g~t~Lh~A~~---~g~~~~v~~Ll~~g~~~~~~~~~~~~~~ 401 (602)
..+.||.|+..|+.+.++.|++.|+++|.. |..|.||||+||. .|+.++|++|+++|+|+|..|
T Consensus 132 ~~~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d------- 204 (497)
T 3lvq_E 132 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKA------- 204 (497)
T ss_dssp CHHHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCC-------
T ss_pred cHHHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccC-------
Confidence 347899999999999999999999999987 8899999999966 899999999999999999998
Q ss_pred cchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCc
Q 038432 402 LSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGR 479 (602)
Q Consensus 402 ~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~ 479 (602)
..|+||||+|+..|+.+++++|+++|++++. ..|.||||+|+..|+.+++++|+++|++++.
T Consensus 205 ----------~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~------ 268 (497)
T 3lvq_E 205 ----------ADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFA------ 268 (497)
T ss_dssp ----------SSSCCHHHHHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC----------
T ss_pred ----------CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCC------
Confidence 9999999999999999999999999999987 7899999999999999999999999999986
Q ss_pred CHHHHHHH
Q 038432 480 TAIEIAMA 487 (602)
Q Consensus 480 TpLh~A~~ 487 (602)
||+|.+..
T Consensus 269 ~~~h~~~~ 276 (497)
T 3lvq_E 269 FPLHVDYS 276 (497)
T ss_dssp --------
T ss_pred Ccceeecc
Confidence 57777654
No 112
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.86 E-value=1.2e-21 Score=157.13 Aligned_cols=91 Identities=26% Similarity=0.433 Sum_probs=81.4
Q ss_pred cCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCc
Q 038432 413 NGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENN 490 (602)
Q Consensus 413 ~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~ 490 (602)
+|+||||+|+..|+.+++++|+++|++++. ..|.||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+..|+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~ 80 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH 80 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence 478999999999999999999999998887 678899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCC
Q 038432 491 VEMVNFLVMNGSD 503 (602)
Q Consensus 491 ~~iv~~Ll~~ga~ 503 (602)
.+++++|+++||+
T Consensus 81 ~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 81 LEVVKLLLEAGAY 93 (93)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCC
Confidence 9999999999885
No 113
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.86 E-value=1.1e-21 Score=191.13 Aligned_cols=190 Identities=15% Similarity=0.097 Sum_probs=144.1
Q ss_pred HHHHHHHhcCCCCCC-----CCCCCchHHHHHHhcCChHHHHHHHhccc-----CCCchh-------hHHHHhc-cch-h
Q 038432 345 AFLDELLKARLDPDI-----GDSKGRTPLHIAASKGHEECVLVLLKHAS-----NVHLRD-------YIIFMYN-LSY-D 405 (602)
Q Consensus 345 ~~~~~Ll~~g~~~n~-----~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~-----~~~~~~-------~~~~~~~-~~~-~ 405 (602)
++....-+.|..+.. .|..+.++++.+...|+..+.+++...-. .++..+ +....+. ..+ .
T Consensus 42 ~c~~~hr~lg~~is~v~s~~~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~ 121 (278)
T 1dcq_A 42 ECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYAR 121 (278)
T ss_dssp HHHHHHHHHCTTTCCEEETTTSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSC
T ss_pred HHHHHHhhcCCCcceeeeeecCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhccc
Confidence 343333344655553 57778888999888888877766643311 111111 0000000 000 0
Q ss_pred HHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--------CCcchhHHHHHhc---CCHHHHHHHHHcCCCCCCC
Q 038432 406 IIILLDMNGNTALWEAISSKHHSIFRILYHCTAISDP--------YTAGDLLCTAEKR---NDMSVMEELVKYGLNVDSK 474 (602)
Q Consensus 406 ~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--------~~g~t~L~~A~~~---~~~~~~~~Ll~~ga~~n~~ 474 (602)
..........++|+.|+..|+.+.++.+++.|++++. ..|.||||+|+.. |+.+++++|+++|+++|.+
T Consensus 122 ~~~~~~~~~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~ 201 (278)
T 1dcq_A 122 KKHADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQ 201 (278)
T ss_dssp CCSSSHHHHHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCC
T ss_pred ccccccchhhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCcccc
Confidence 0000012234799999999999999999999998652 5799999999999 8999999999999999999
Q ss_pred CCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHHHHHHHHhhhceeeecc
Q 038432 475 DRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQKREIGHRITVHD 534 (602)
Q Consensus 475 d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~~~~~~~~l~~~~ 534 (602)
|..|+||||+|+..|+.+++++|+++|||++.+|..|.||||+|+..++.++++.|...+
T Consensus 202 d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g 261 (278)
T 1dcq_A 202 TGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQAL 261 (278)
T ss_dssp CTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999999999999999988888776
No 114
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.86 E-value=9.5e-22 Score=157.68 Aligned_cols=93 Identities=35% Similarity=0.497 Sum_probs=88.8
Q ss_pred CCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHH
Q 038432 330 NMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIIL 409 (602)
Q Consensus 330 ~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~ 409 (602)
+|+||||+|+..|+.+++++|++.|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d--------------- 65 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD--------------- 65 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC---------------
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccC---------------
Confidence 47999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhccCCcHHHHHHHcCChhHHHHHHhcCCC
Q 038432 410 LDMNGNTALWEAISSKHHSIFRILYHCTAI 439 (602)
Q Consensus 410 ~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~ 439 (602)
..|.||||+|+..|+.+++++|+++|++
T Consensus 66 --~~g~t~l~~A~~~~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 66 --KNGRTPLHLAARNGHLEVVKLLLEAGAY 93 (93)
T ss_dssp --TTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred --CCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 9999999999999999999999999875
No 115
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.86 E-value=4.6e-22 Score=166.52 Aligned_cols=106 Identities=22% Similarity=0.255 Sum_probs=99.9
Q ss_pred hhccCCcHHHHHHHcCChhHHHHHHhcCCCCCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHH
Q 038432 410 LDMNGNTALWEAISSKHHSIFRILYHCTAISDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMA 487 (602)
Q Consensus 410 ~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~ 487 (602)
.|..|.||||+|+..|+.+++++|+++|++++. ..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.
T Consensus 5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~~ 84 (115)
T 2l6b_A 5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKK 84 (115)
T ss_dssp CSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHHT
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHH
Confidence 358999999999999999999999999999887 789999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHCCCCcccCCCCCCChh
Q 038432 488 ENNVEMVNFLVMNGSDVVGANKCEFSST 515 (602)
Q Consensus 488 ~~~~~iv~~Ll~~ga~~~~~d~~g~t~l 515 (602)
.++.+++++|+++|+|++.++..|.||-
T Consensus 85 ~~~~~~~~~Ll~~ga~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 85 NGHHEIVKLLDAKGADVNARSWGSSHHH 112 (115)
T ss_dssp TTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred CCCHHHHHHHHHcCCCCCcCCccccccc
Confidence 9999999999999999999999999984
No 116
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.84 E-value=2.3e-21 Score=162.20 Aligned_cols=105 Identities=29% Similarity=0.366 Sum_probs=61.2
Q ss_pred CCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHHHHhcCCC
Q 038432 360 GDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRILYHCTAI 439 (602)
Q Consensus 360 ~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~Ll~~g~~ 439 (602)
+|.+|+||||+||..|+.+++++|+++|++++..| ..|.||||+|+..|+.+++++|+++|++
T Consensus 5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d-----------------~~g~t~L~~A~~~~~~~~~~~Ll~~g~~ 67 (115)
T 2l6b_A 5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARS-----------------KDGNTPLHLAAKNGHAEIVKLLLAKGAD 67 (115)
T ss_dssp CSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCC-----------------SSSCCTTHHHHTTTCHHHHHHHTTTTCC
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcC-----------------CCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 45555555555555555555555555555555554 5555555555555555555555555555
Q ss_pred CCC--CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCH
Q 038432 440 SDP--YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTA 481 (602)
Q Consensus 440 ~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~Tp 481 (602)
++. ..|.||||+|+..|+.+++++|+++|+++|.++..|.||
T Consensus 68 ~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~ 111 (115)
T 2l6b_A 68 VNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHH 111 (115)
T ss_dssp TTCCCTTCCCTTHHHHTTTCHHHHHHHHTTSSSHHHHSCCCC--
T ss_pred CcccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCcccccc
Confidence 544 445566666666666666666666666666666666665
No 117
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=99.79 E-value=1.3e-18 Score=154.82 Aligned_cols=142 Identities=23% Similarity=0.307 Sum_probs=124.6
Q ss_pred hHHHHhhCCHHHHHHHHHHhhHhhhhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEe
Q 038432 158 QHQLIEQLPKSICKSICQHLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDY 237 (602)
Q Consensus 158 ~~~~l~~lp~~l~~~v~~~~~~~~l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~ 237 (602)
.+++++.+|+++|.++..+++.++++++|+|++++++.+..++..++.+.|++|++|+++|+.++.+|||.+|.|+++.
T Consensus 5 ~~~il~~lp~~l~~~i~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~- 83 (160)
T 4f8a_A 5 TEKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQ- 83 (160)
T ss_dssp ----------CCHHHHHHHHTHHHHTTCGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEE-
T ss_pred hHHHHHHCCHHHHHHHHHHHHHHHHHhCHhhhhCCHHHHHHHHHhceeeeeCCCCEEEeCCCCccEEEEEEeeEEEEEE-
Confidence 3568999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ccCceeEEEEeCCCCeeehhhhhcC--CCceeEEEEcceeEEEEeeHHHHHHHHHhChHHHHHHHHHH
Q 038432 238 EMEKEIAVGTLQTGDMFGEVGALCC--RPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNF 303 (602)
Q Consensus 238 ~~~~~~~~~~l~~g~~fGe~~ll~~--~~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~l 303 (602)
++..+..+++|++||+.+++.+ .++..+++|.++|.++.+++++|.+++..+|.....+.+.+
T Consensus 84 ---~~~~~~~~~~G~~fG~~~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l 148 (160)
T 4f8a_A 84 ---DDEVVAILGKGDVFGDVFWKEATLAQSCANVRALTYCDLHVIKRDALQKVLEFYTAFSHSFSRNL 148 (160)
T ss_dssp ---TTEEEEEEETTCEEECCTTTCSSCCBCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHC
T ss_pred ---CCEEEEEecCCCEeCcHHHhcCcccceEEEEEECCceEEEEEcHHHHHHHHHHHHHHHHHHHHHH
Confidence 2368889999999999999988 68899999999999999999999999999999887776654
No 118
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.75 E-value=2.5e-18 Score=142.27 Aligned_cols=88 Identities=20% Similarity=0.336 Sum_probs=63.5
Q ss_pred CCcchhHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHcCcHHHHHHHHHCCCCcccCCCCCCChhhHHHHHH
Q 038432 443 YTAGDLLCTAEKRNDMSVMEELVKYGLNVDSKDRHGRTAIEIAMAENNVEMVNFLVMNGSDVVGANKCEFSSTNLNDMLQ 522 (602)
Q Consensus 443 ~~g~t~L~~A~~~~~~~~~~~Ll~~ga~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll~~ga~~~~~d~~g~t~l~~a~~~~ 522 (602)
.+|+||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..+
T Consensus 22 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~ 101 (110)
T 2zgd_A 22 SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNG 101 (110)
T ss_dssp CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred CccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHHHHcC
Confidence 45666666666667777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHhhhcee
Q 038432 523 KREIGHRI 530 (602)
Q Consensus 523 ~~~~~~~l 530 (602)
+.++++.|
T Consensus 102 ~~~~~~~L 109 (110)
T 2zgd_A 102 NEDLAEIL 109 (110)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHh
Confidence 76666543
No 119
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.74 E-value=3.5e-18 Score=141.39 Aligned_cols=90 Identities=31% Similarity=0.421 Sum_probs=85.8
Q ss_pred CCCCCchhhhHhhhcCcHHHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHHHhcccCCCchhhHHHHhccchhH
Q 038432 327 GDPNMSVNLLTVASTGNAAFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLLKHASNVHLRDYIIFMYNLSYDI 406 (602)
Q Consensus 327 ~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~ 406 (602)
.+.+|.||||.|+..|+.+++++|++.|+++|.+|..|.||||+|+..|+.+++++|+++|++++..|
T Consensus 20 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d------------ 87 (110)
T 2zgd_A 20 MGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQD------------ 87 (110)
T ss_dssp --CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC------------
T ss_pred cCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccc------------
Confidence 57789999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHhhccCCcHHHHHHHcCChhHHHHH
Q 038432 407 IILLDMNGNTALWEAISSKHHSIFRIL 433 (602)
Q Consensus 407 ~~~~~~~g~tpLh~A~~~~~~~~~~~L 433 (602)
..|.||||+|+..|+.+++++|
T Consensus 88 -----~~g~tpl~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 88 -----KFGKTAFDISIDNGNEDLAEIL 109 (110)
T ss_dssp -----TTSCCHHHHHHHHTCHHHHHHH
T ss_pred -----cCCCcHHHHHHHcCCHHHHHHh
Confidence 9999999999999999999987
No 120
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=99.71 E-value=1.8e-16 Score=137.76 Aligned_cols=130 Identities=14% Similarity=0.192 Sum_probs=115.8
Q ss_pred HhhhhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEec-cCceeE---EEEeCCCCee
Q 038432 179 LHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYE-MEKEIA---VGTLQTGDMF 254 (602)
Q Consensus 179 ~~~l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~-~~~~~~---~~~l~~g~~f 254 (602)
.++++++|+|++++++.+..++..++.+.|++|++|+++|+.++.+|+|.+|.|+++... ++++.. +..+.+|++|
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~~~~G~~f 84 (142)
T 3mdp_A 5 PERLRVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSNGGAGSAANSTVCSVVPGAIF 84 (142)
T ss_dssp TTGGGGSHHHHTSCHHHHHHHHHTEEEEEECTTCEEECTTSBCCEEEEEEESCEEEECC---------CEEEEECTTCEE
T ss_pred HHHHhhCchhccCCHHHHHHHHHhhcEEecCCCCEEEeCCCCCCcEEEEEeCEEEEEEECCCCCceEeeeEEEecCCCEe
Confidence 468899999999999999999999999999999999999999999999999999998644 345667 8999999999
Q ss_pred ehhhhhcCCCceeEEEEcceeEEEEeeHHHHHHHHHhChHHHHHHHHHHHHhhh
Q 038432 255 GEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHK 308 (602)
Q Consensus 255 Ge~~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~ll~~~~ 308 (602)
|+.+++.+.+++.+++|.++|+++.++++.|.+++..+|.....+++.+.....
T Consensus 85 G~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~ 138 (142)
T 3mdp_A 85 GVSSLIKPYHYTSSARATKPVRVVDINGARLREMSENNQALGQVLMNNVAAAVL 138 (142)
T ss_dssp CGGGSSTTCBCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred chHHHcCCCCceEEEEECCcEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999888888766544
No 121
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=99.70 E-value=8.3e-17 Score=139.30 Aligned_cols=130 Identities=18% Similarity=0.178 Sum_probs=116.5
Q ss_pred hCCHHHHHHHHHHhhHhhhhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEeccCcee
Q 038432 164 QLPKSICKSICQHLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEI 243 (602)
Q Consensus 164 ~lp~~l~~~v~~~~~~~~l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~~~~ 243 (602)
++|+.+|.+.......++++++++|++++++.+..++..++.+.|.+|++|+++|+.++.+|||.+|.|++... + .
T Consensus 7 ~~p~~~k~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~-g---~ 82 (139)
T 3ocp_A 7 TLPFYPKSPQSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTKE-G---V 82 (139)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCTTTTTSCHHHHHHHHHHCEEEEECSSCEEECTTSCCCEEEEEEECCEEEEET-T---E
T ss_pred cCCCCCCCHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEecCCCCEEEeCCCcCCEEEEEEeCEEEEEEC-C---E
Confidence 57788888888888899999999999999999999999999999999999999999999999999999999652 2 4
Q ss_pred EEEEeCCCCeeehhhhhcCCCceeEEEEcceeEEEEeeHHHHHHHHHhChHHHH
Q 038432 244 AVGTLQTGDMFGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNV 297 (602)
Q Consensus 244 ~~~~l~~g~~fGe~~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~ 297 (602)
.+..+.+|++||+.+++.+.++..+++|.++|.++.+++++|.+++..+|....
T Consensus 83 ~~~~~~~G~~fGe~~~l~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~r 136 (139)
T 3ocp_A 83 KLCTMGPGKVFGELAILYNCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKH 136 (139)
T ss_dssp EEEEECTTCEESCHHHHHCCCCSSEEEESSCEEEEEEEHHHHHHHHTC------
T ss_pred EEEEeCCCCEeccHHHHCCCCcceEEEECcceEEEEEcHHHHHHHHhhChHhhh
Confidence 788999999999999999999999999999999999999999999999997654
No 122
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=99.69 E-value=9.2e-17 Score=142.88 Aligned_cols=125 Identities=18% Similarity=0.257 Sum_probs=115.9
Q ss_pred HHHHhhHhhhhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEeccCceeEEEEeCCCC
Q 038432 173 ICQHLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGD 252 (602)
Q Consensus 173 v~~~~~~~~l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~ 252 (602)
-......++++++|+|.+++++.+..++..++.+.|.+|++|+++|+.++.+|||.+|.|+++...++++..+..+.+|+
T Consensus 31 ~~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~~~~~~~G~ 110 (161)
T 3idb_B 31 DQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRG 110 (161)
T ss_dssp HHHHHHHHHHTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEEETTEEEEEEEEESCC
T ss_pred HHHHHHHHHHhCCHhhhcCCHHHHHHHHHhcceeEeCCCCEEEeCCCCCcEEEEEEeCEEEEEEcCCCCeEEEEEcCCCC
Confidence 33445668999999999999999999999999999999999999999999999999999999986677888999999999
Q ss_pred eeehhhhhcCCCceeEEEEcceeEEEEeeHHHHHHHHHhChHHHH
Q 038432 253 MFGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNV 297 (602)
Q Consensus 253 ~fGe~~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~ 297 (602)
+||+.+++.+.++..+++|.+++.++.+++++|.+++..+|....
T Consensus 111 ~fGe~~~~~~~~~~~~v~A~~~~~~~~i~~~~~~~l~~~~p~~~~ 155 (161)
T 3idb_B 111 SFGELALMYNTPRAATITATSPGALWGLDRVTFRRIIVKNNAKKR 155 (161)
T ss_dssp EECGGGGTCCCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHTSC
T ss_pred EechHHHHcCCCcccEEEECCCeEEEEEeHHHHHHHHHHCHHHHH
Confidence 999999999999999999999999999999999999999987543
No 123
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=99.69 E-value=3.2e-16 Score=142.96 Aligned_cols=146 Identities=17% Similarity=0.251 Sum_probs=127.0
Q ss_pred hHHHHhhCCHHHH----HHHHHHhhHhhhhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEE
Q 038432 158 QHQLIEQLPKSIC----KSICQHLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVE 233 (602)
Q Consensus 158 ~~~~l~~lp~~l~----~~v~~~~~~~~l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~ 233 (602)
+..+++.++|.+- .+.......++++++|+|.+++++.+..++..++.+.|++|++|+++|+.++.+|+|.+|.|+
T Consensus 13 ~~~~~~~~~~dli~~~~~~~~~~~~~~~L~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~ly~I~~G~v~ 92 (187)
T 3gyd_A 13 ENLYFQGMYPDLVHLGGADKYFEEILEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTGEVN 92 (187)
T ss_dssp HHHHTSTTGGGCEEEEEGGGGHHHHHHHHTTCCSSCCCCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEEEEEE
T ss_pred cceeecCCchHHhccCccHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEEeCCCCEEEcCCCCCCeEEEEEeCEEE
Confidence 3445555555432 233445566889999999999999999999999999999999999999999999999999999
Q ss_pred EEEec-cCceeEEEEeCCCCeeehhhhhcCCCceeEEEEcceeEEEEeeHHHHHHHHHhChHHHHHHHHHH
Q 038432 234 MIDYE-MEKEIAVGTLQTGDMFGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNF 303 (602)
Q Consensus 234 i~~~~-~~~~~~~~~l~~g~~fGe~~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~l 303 (602)
++... ++++..+..+.+|++||+.+++.+.+++.+++|.++++++.++++.|.+++..+|.....+++.+
T Consensus 93 v~~~~~~g~~~~~~~~~~G~~fGe~~~l~~~~~~~~v~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l 163 (187)
T 3gyd_A 93 VIKDIPNKGIQTIAKVGAGAIIGEMSMIDGMPRSASCVASLPTDFAVLSRDALYQLLANMPKLGNKVLIRL 163 (187)
T ss_dssp EEEEETTTEEEEEEEEETTCEESHHHHHHCCCCSSEEEEEEEEEEEEEEHHHHHHHHHHCHHHHHHHHHHH
T ss_pred EEEECCCCCeEEEEEccCCCeeeeHHHhCCCCeeEEEEECCCeEEEEEcHHHHHHHHHHChHHHHHHHHHH
Confidence 99754 55778899999999999999999999999999999999999999999999999999988887443
No 124
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=99.68 E-value=6.4e-16 Score=135.36 Aligned_cols=132 Identities=17% Similarity=0.250 Sum_probs=121.4
Q ss_pred HhhhhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEec-cCceeEEEEeCCCCeeehh
Q 038432 179 LHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYE-MEKEIAVGTLQTGDMFGEV 257 (602)
Q Consensus 179 ~~~l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~-~~~~~~~~~l~~g~~fGe~ 257 (602)
.++++++|+|..++++.+..++..++.+.|++|++|+++|++++.+|||.+|.|+++... ++++..+..+.+|++||+.
T Consensus 4 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~ 83 (149)
T 2pqq_A 4 DDVLRRNPLFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDGRENMLAVVGPSELIGEL 83 (149)
T ss_dssp GGGGTSSTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSEECEEEEEEESCEEEEEECTTSSEEEEEEECTTCEESGG
T ss_pred HHHhhhChhhhcCCHHHHHHHHHhceEEEeCCCCEEECCCCCCCeEEEEEecEEEEEEECCCCcEEEEEEcCCcCEechH
Confidence 468899999999999999999999999999999999999999999999999999998754 4678889999999999999
Q ss_pred hhhcCCCceeEEEEcceeEEEEeeHHHHHHHHHhChHHHHHHHHHHHHhhhhh
Q 038432 258 GALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHKKL 310 (602)
Q Consensus 258 ~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~ll~~~~~~ 310 (602)
+++.+.++..+++|.++|+++.+++++|.+++..+|.....+++.+..+....
T Consensus 84 ~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~~l~~~ 136 (149)
T 2pqq_A 84 SLFDPGPRTATGTALTEVKLLALGHGDLQPWLNVRPEVATALLRAVARRLRKT 136 (149)
T ss_dssp GGTSCEECSSEEEESSCEEEEEEEGGGHHHHHHHCTHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCCcceEEEEccceEEEEEeHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988887776655443
No 125
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=99.66 E-value=1.3e-15 Score=134.28 Aligned_cols=131 Identities=18% Similarity=0.232 Sum_probs=117.1
Q ss_pred HhhhhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEec-cCceeEEEEeCCCCeeehh
Q 038432 179 LHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYE-MEKEIAVGTLQTGDMFGEV 257 (602)
Q Consensus 179 ~~~l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~-~~~~~~~~~l~~g~~fGe~ 257 (602)
.++++++++|..++++.+..++..++.+.|++|++|+++|+.++.+|||.+|.|+++... ++++..+..+.+|++||+.
T Consensus 11 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~ 90 (154)
T 2z69_A 11 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAEA 90 (154)
T ss_dssp HHHHTTSTTTTTSCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEESCEEEECCCC-----CCEEECTTEEESGG
T ss_pred HHHhhcChhhcCCCHHHHHHHHhhCcEEEecCCCEEecCCCccceEEEEEeCEEEEEEECCCCCEEEEEEccCCCeeccH
Confidence 467899999999999999999999999999999999999999999999999999998654 3567789999999999999
Q ss_pred hhhcCCC-ceeEEEEcceeEEEEeeHHHHHHHHHhChHHHHHHHHHHHHhhhh
Q 038432 258 GALCCRP-QIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHKK 309 (602)
Q Consensus 258 ~ll~~~~-~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~ll~~~~~ 309 (602)
+++.+.+ +..+++|.++|+++.++++.|.+++..+|.....+++.+..+...
T Consensus 91 ~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~~~~rl~~ 143 (154)
T 2z69_A 91 MMFMDTPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLSTRLHQ 143 (154)
T ss_dssp GGGSSCSBCSSEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHHHHHTC
T ss_pred hhccCCCCCceEEEEccceEEEEECHHHHHHHHHHChHHHHHHHHHHHHHHHH
Confidence 9999988 999999999999999999999999999999998888877665443
No 126
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=99.64 E-value=2.1e-15 Score=130.24 Aligned_cols=125 Identities=22% Similarity=0.311 Sum_probs=114.4
Q ss_pred hHhhhhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEeccCceeEEEEeCCCCeeehh
Q 038432 178 FLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFGEV 257 (602)
Q Consensus 178 ~~~~l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~fGe~ 257 (602)
..++++++|+|.+++++.+..++..++.+.|++|++|+++|+.++.+|||.+|.|+++... ...+.+|++||+.
T Consensus 9 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~------~~~~~~G~~~G~~ 82 (138)
T 1vp6_A 9 NWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN------PVELGPGAFFGEM 82 (138)
T ss_dssp HHHHHTTCGGGGGCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEECSSS------CEEECTTCEECHH
T ss_pred HHHHHHhChhhhcCCHHHHHHHHHhhcEEEeCCCCEEEeCCCCcceEEEEEeeEEEEEeCC------cceECCCCEeeeh
Confidence 3467999999999999999999999999999999999999999999999999999998643 2478999999999
Q ss_pred hhhcCCCceeEEEEcceeEEEEeeHHHHHHHHHhChHHHHHHHHHHHHhhh
Q 038432 258 GALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHK 308 (602)
Q Consensus 258 ~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~ll~~~~ 308 (602)
+++.+.++..+++|.++|+++.++++.|.+++..+|.....+.+.+.++..
T Consensus 83 ~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~r~~ 133 (138)
T 1vp6_A 83 ALISGEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALERRG 133 (138)
T ss_dssp HHHHCCCCSSCEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHCC
T ss_pred HhccCCCceeEEEECCCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999888877666543
No 127
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=99.63 E-value=5.2e-15 Score=138.44 Aligned_cols=128 Identities=16% Similarity=0.239 Sum_probs=116.0
Q ss_pred hhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEe-ccCceeEEEEeCCCCeeehhhhh
Q 038432 182 VEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDY-EMEKEIAVGTLQTGDMFGEVGAL 260 (602)
Q Consensus 182 l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~-~~~~~~~~~~l~~g~~fGe~~ll 260 (602)
|+++|+|.+++++.+..+...++.+.|++|++|+.+|++++.+|||.+|.|+++.. .++++..+..+++|++||+.+++
T Consensus 1 L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~ 80 (216)
T 4ev0_A 1 MKGSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQERTLALLGPGELFGEMSLL 80 (216)
T ss_dssp ---CGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECSSSCEEEEEEECTTCEECHHHHH
T ss_pred CCCChhhcCCCHHHHHHHHHhheEEEeCCCCEEEeCCCCCCEEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEeehhhc
Confidence 46889999999999999999999999999999999999999999999999999975 45678899999999999999999
Q ss_pred cCCCceeEEEEcceeEEEEeeHHHHHHHHHhChHHHHHHHHHHHHhhhh
Q 038432 261 CCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHKK 309 (602)
Q Consensus 261 ~~~~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~ll~~~~~ 309 (602)
.+.+++.++.|.++++++.++++.|.+++..+|.....+.+.+..+...
T Consensus 81 ~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~~~~ 129 (216)
T 4ev0_A 81 DEGERSASAVAVEDTELLALFREDYLALIRRLPLVAHNLAALLARRLRE 129 (216)
T ss_dssp HCCBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred CCCCcceEEEEcCCEEEEEEcHHHHHHHHHHCcHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988887776665443
No 128
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=99.62 E-value=6.2e-15 Score=135.41 Aligned_cols=130 Identities=11% Similarity=0.049 Sum_probs=118.1
Q ss_pred hHhhhhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEe-ccCceeEEEEeCCCCeeeh
Q 038432 178 FLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDY-EMEKEIAVGTLQTGDMFGE 256 (602)
Q Consensus 178 ~~~~l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~-~~~~~~~~~~l~~g~~fGe 256 (602)
...++++++.|.+++++.+..+...++.+.|++|++|+++||+++.+|||.+|.|+++.. .+|++..+..+.+|++||+
T Consensus 5 ~~~l~~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~G~~~~~~y~i~~G~v~~~~~~~~G~e~~~~~~~~g~~~ge 84 (194)
T 3dn7_A 5 HTALINHIRKFIFLTDEDAGTLSAFFQLKKVRKKETLLKTGEICRINYFVVKGCLRLFFIDEKGIEQTTQFAIENWWLSD 84 (194)
T ss_dssp CHHHHHHHHTTSCCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEECC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHhCEEEEEcCCCEEECCCCeeeEEEEeecCeEEEEEECCCCCEEEEEEccCCcEEee
Confidence 356788999999999999999999999999999999999999999999999999999975 4567889999999999998
Q ss_pred h-hhhcCCCceeEEEEcceeEEEEeeHHHHHHHHHhChHHHHHHHHHHHHhh
Q 038432 257 V-GALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQH 307 (602)
Q Consensus 257 ~-~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~ll~~~ 307 (602)
. +++.+.+++.+++|.++++++.++++.|.+++..+|.....+.+.+..+.
T Consensus 85 ~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~~l 136 (194)
T 3dn7_A 85 YMAFQKQQPADFYIQSVENCELLSITYTEQENLFERIPALERYFRLVYQKSF 136 (194)
T ss_dssp HHHHHHTCBCSSEEEESSCEEEEEEEHHHHHHHHHHCTTHHHHHHHHHHHHH
T ss_pred hHHHhcCCCCceEEEEECCEEEEEEeHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 7 78889999999999999999999999999999999998877766655443
No 129
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=99.61 E-value=8e-15 Score=139.32 Aligned_cols=133 Identities=17% Similarity=0.257 Sum_probs=122.2
Q ss_pred hhHhhhhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEe-ccCceeEEEEeCCCCeee
Q 038432 177 LFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDY-EMEKEIAVGTLQTGDMFG 255 (602)
Q Consensus 177 ~~~~~l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~-~~~~~~~~~~l~~g~~fG 255 (602)
...++++++|+|..++++.+..+...++.+.|++|++|+.+|++++.+|||.+|.|+++.. .++++..+..+++|++||
T Consensus 8 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~G 87 (237)
T 3fx3_A 8 AQKAIARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRMTPTGSEAVVSVFTRGESFG 87 (237)
T ss_dssp HHHHHHTTSHHHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEECTTSCEEEEEEEETTEEEC
T ss_pred HHHHHHhCCHhhccCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEeCCCCEec
Confidence 3457899999999999999999999999999999999999999999999999999999975 456788999999999999
Q ss_pred hhhhhcCCCceeEEEEcceeEEEEeeHHHHHHHHHhChHHHHHHHHHHHHhhhh
Q 038432 256 EVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHKK 309 (602)
Q Consensus 256 e~~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~ll~~~~~ 309 (602)
+.+++.+.+++.++.|.+++.++.++++.|.+++..+|.....+++.+..+...
T Consensus 88 ~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~ 141 (237)
T 3fx3_A 88 EAVALRNTPYPVSAEAVTPCEVMHIPSPVFVSLMRRDPEICISILATTFGHLHS 141 (237)
T ss_dssp HHHHHHTCCCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred hHHHhcCCCCCceEEECCceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988887776665443
No 130
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=99.61 E-value=6.8e-15 Score=139.24 Aligned_cols=131 Identities=15% Similarity=0.206 Sum_probs=119.9
Q ss_pred HhhhhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEec-cCceeEEEEeCCCCeeehh
Q 038432 179 LHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYE-MEKEIAVGTLQTGDMFGEV 257 (602)
Q Consensus 179 ~~~l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~-~~~~~~~~~l~~g~~fGe~ 257 (602)
.++++++|+|.+++++.+..++..++.+.|++|++|+.+|++++.+|||.+|.|+++... ++++..+..+.+|++||+.
T Consensus 5 ~~~L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~ 84 (231)
T 3e97_A 5 LDDLKRSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVSLGGRERVLGDIYAPGVVGET 84 (231)
T ss_dssp HHHHHTSGGGTTCCHHHHHHHHHTEEEEEECTTCBCCCTTCTTTCEEEECSSEEEEEEECC--CEEEEEEEESSEEESTT
T ss_pred HHHHhcChhhccCCHHHHHHHHHhcEEEEECCCCEEEeCCCCCCeEEEEEecEEEEEEECCCCceEEEEecCCCCEEeeH
Confidence 467899999999999999999999999999999999999999999999999999999754 5578889999999999999
Q ss_pred hhhcCCCceeEEEEcceeEEEEeeHHHHHHHHHhChHHHHHHHHHHHHhhhh
Q 038432 258 GALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHKK 309 (602)
Q Consensus 258 ~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~ll~~~~~ 309 (602)
+++.+.+++.++.|.++++++.++++.|.+++..+|.....+++.+..+...
T Consensus 85 ~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~ 136 (231)
T 3e97_A 85 AVLAHQERSASVRALTPVRTLMLHREHFELILRRHPRVLWNLAEMLARRVTF 136 (231)
T ss_dssp TTTCCCCCCEEEEESSCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCceEEEEECCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988888776665443
No 131
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=99.61 E-value=6.4e-15 Score=129.80 Aligned_cols=117 Identities=20% Similarity=0.253 Sum_probs=108.0
Q ss_pred HhhHhhhhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEeccCceeEEEEeCCCCeee
Q 038432 176 HLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFG 255 (602)
Q Consensus 176 ~~~~~~l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~fG 255 (602)
....++++++|+|.+++++.+..++..++.+.|.+|++|+++|+.++.+|||.+|.|+++.. + ..+..+.+|++||
T Consensus 34 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~-~---~~~~~~~~G~~fG 109 (154)
T 3pna_A 34 AALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVN-N---EWATSVGEGGSFG 109 (154)
T ss_dssp HHHHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEEEET-T---EEEEEECTTCEEC
T ss_pred HHHHHHHHhChhhhhCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEecEEEEEEC-C---EEEEEecCCCEee
Confidence 34557899999999999999999999999999999999999999999999999999999972 2 4678899999999
Q ss_pred hhhhhcCCCceeEEEEcceeEEEEeeHHHHHHHHHhChHHH
Q 038432 256 EVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDN 296 (602)
Q Consensus 256 e~~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~ 296 (602)
+.+++.+.++..++.|.++|.++.++++.|.+++..++...
T Consensus 110 e~~~~~~~~~~~~v~A~~~~~~~~i~~~~~~~ll~~~~~~~ 150 (154)
T 3pna_A 110 ELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRK 150 (154)
T ss_dssp CHHHHHCCCCSSEEEESSCEEEEEEEHHHHHHHTHHHHHHC
T ss_pred ehHhhcCCCcceEEEECcceEEEEEeHHHHHHHHHhChHHH
Confidence 99999999999999999999999999999999999888654
No 132
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.61 E-value=4.8e-15 Score=146.21 Aligned_cols=144 Identities=17% Similarity=0.182 Sum_probs=128.3
Q ss_pred HHHhhCCHHHHHHHHHHhhHhhhhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEecc
Q 038432 160 QLIEQLPKSICKSICQHLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEM 239 (602)
Q Consensus 160 ~~l~~lp~~l~~~v~~~~~~~~l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~ 239 (602)
....++|+..|.+.......+.++++++|++++++.+..++..++.+.|++|++|+++||.++.+|||.+|.|++...+
T Consensus 19 ~~~~~~p~~~rs~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~~g- 97 (299)
T 3shr_A 19 GSMQAFRKFTKSERSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTKEG- 97 (299)
T ss_dssp ---CCCCCCCCCHHHHHHHHHHHHTCTTTTTSCHHHHHHHHHHCEEEEECTTCEEECTTCBCCCEEEEEESCEEEEETT-
T ss_pred cccCCCCCcCCCHHHHHHHHHHHhhCHHHHcCCHHHHHHHHHhcCeEEECCCCEEEcCCCcCceEEEEEEEEEEEEECC-
Confidence 3455789999999888999999999999999999999999999999999999999999999999999999999996522
Q ss_pred CceeEEEEeCCCCeeehhhhhcCCCceeEEEEcceeEEEEeeHHHHHHHHHhChHHHHHHHHHHHHhh
Q 038432 240 EKEIAVGTLQTGDMFGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQH 307 (602)
Q Consensus 240 ~~~~~~~~l~~g~~fGe~~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~ll~~~ 307 (602)
..+..+.+|++||+.+++.+.++.++++|.++|.++.+++++|.+++...|.........++...
T Consensus 98 ---~~~~~~~~G~~fGe~~ll~~~~~~~tv~a~~~~~l~~i~~~~~~~i~~~~~~~~~~~~~~~l~~~ 162 (299)
T 3shr_A 98 ---VKLCTMGPGKVFGELAILYNCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHTEYMEFLKSV 162 (299)
T ss_dssp ---EEEEEECTTCEESCSGGGTTTBCCSEEEESSCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred ---EEEEEeCCCCeeeHhHHhcCCCCCcEEEEcCCeEEEEEcHHHHHHHhhHhHHHHHHHHHHHHhhC
Confidence 57889999999999999999999999999999999999999999999999877666555555443
No 133
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=99.60 E-value=6.1e-15 Score=139.15 Aligned_cols=131 Identities=21% Similarity=0.312 Sum_probs=120.3
Q ss_pred HhhhhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEec-cCceeEEEEeCCCCeeehh
Q 038432 179 LHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYE-MEKEIAVGTLQTGDMFGEV 257 (602)
Q Consensus 179 ~~~l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~-~~~~~~~~~l~~g~~fGe~ 257 (602)
.++++++|+|..++++.+..+...++.+.|++|++|+.+||+++.+|||.+|.|+++... ++++..+..+.+|++||+.
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~ 84 (227)
T 3d0s_A 5 DEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMFGEL 84 (227)
T ss_dssp HHHHTTSSTTSSCCSSTTHHHHTTSCEEEECTTCEEECTTCCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESCH
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCeEEEeCCCCEEEcCCCcCCEEEEEEeeEEEEEEECCCCcEEEEEEecCCCEEeeH
Confidence 457899999999999999999999999999999999999999999999999999999754 4678889999999999999
Q ss_pred hhhcCCCceeEEEEcceeEEEEeeHHHHHHHHHhChHHHHHHHHHHHHhhhh
Q 038432 258 GALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHKK 309 (602)
Q Consensus 258 ~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~ll~~~~~ 309 (602)
+++.+.+++.+++|.++|+++.++++.|.+++..+|.....+++.+..+...
T Consensus 85 ~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~ 136 (227)
T 3d0s_A 85 SIFDPGPRTSSATTITEVRAVSMDRDALRSWIADRPEISEQLLRVLARRLRR 136 (227)
T ss_dssp HHHSCSCCSSEEEESSCEEEEEEEHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCceeEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988887776655443
No 134
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=99.59 E-value=2.2e-15 Score=127.91 Aligned_cols=93 Identities=22% Similarity=0.380 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHhhcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHhhhHHHHHhhhhcCCC
Q 038432 56 RYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRL 135 (602)
Q Consensus 56 ~Y~~s~ywa~~t~~tvGygd~~~~~~~e~~~~~~~~~~g~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~m~~~~l 135 (602)
.|.+|+||+++|+|||||||++|.|..+++++++++++|+.+++++++.+.+.+........+.++..+..+...+..++
T Consensus 43 ~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 122 (137)
T 4h33_A 43 NYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCKKPTNSSTQRANKITQLISETPDL 122 (137)
T ss_dssp SHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTTC--------------------
T ss_pred CHHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 48899999999999999999999999999999999999999999999999988876554443333332222333344455
Q ss_pred ChhHHHHHHHHHH
Q 038432 136 PPRLKKQILAYMC 148 (602)
Q Consensus 136 ~~~l~~ri~~y~~ 148 (602)
+++....+++|++
T Consensus 123 ~~~~i~~l~~~l~ 135 (137)
T 4h33_A 123 TKEEIAVVEQFLT 135 (137)
T ss_dssp -------------
T ss_pred cHHHHHHHHHHHh
Confidence 5665556666553
No 135
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=99.59 E-value=2.5e-14 Score=135.34 Aligned_cols=132 Identities=8% Similarity=0.143 Sum_probs=120.5
Q ss_pred hHhhhhhhcccccCCHHHHHHHHHh--ccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEe-ccCceeEEEEeCCCCee
Q 038432 178 FLHTVEKVYLFKDVSKEIIVLLVAK--MKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDY-EMEKEIAVGTLQTGDMF 254 (602)
Q Consensus 178 ~~~~l~~~~~f~~~s~~~l~~l~~~--~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~-~~~~~~~~~~l~~g~~f 254 (602)
...++.++|+|..++++.+..++.. ++.+.|++|++|+++|+.++.+|||.+|.|+++.. .++++..+..+.+|++|
T Consensus 16 ~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~l~~~~~G~~f 95 (232)
T 1zyb_A 16 MFDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIYTVIEQIEAPYLI 95 (232)
T ss_dssp HHTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECGGGSCEEEEEEESSEEE
T ss_pred HHHHHhcCccccCCCHHHHHHHHhhCCcEEEEECCCCEEECCCCcccEEEEEEeeEEEEEEECCCCCEEEEEEccCCCee
Confidence 3467899999999999999999998 99999999999999999999999999999999864 45678899999999999
Q ss_pred ehhhhhcCCC-ceeEEEEcceeEEEEeeHHHHHHHHHhChHHHHHHHHHHHHhhhh
Q 038432 255 GEVGALCCRP-QIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHKK 309 (602)
Q Consensus 255 Ge~~ll~~~~-~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~ll~~~~~ 309 (602)
|+.+++.+.+ +..+++|.++++++.++++.|.+++..+|+....+++.+..+...
T Consensus 96 G~~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~ 151 (232)
T 1zyb_A 96 EPQSLFGMNTNYASSYVAHTEVHTVCISKAFVLSDLFRYDIFRLNYMNIVSNRAQN 151 (232)
T ss_dssp CGGGGSSSCCBCSSEEEESSCEEEEEEEHHHHHHTGGGSHHHHHHHHHHHHHHHHH
T ss_pred eehHHhCCCCCCceEEEEccceEEEEEEHHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence 9999999988 899999999999999999999999999999988888776665443
No 136
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=99.58 E-value=2.5e-14 Score=134.14 Aligned_cols=129 Identities=11% Similarity=0.049 Sum_probs=117.5
Q ss_pred hhhhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEe-ccCceeEEEEeCCCCe--eeh
Q 038432 180 HTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDY-EMEKEIAVGTLQTGDM--FGE 256 (602)
Q Consensus 180 ~~l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~-~~~~~~~~~~l~~g~~--fGe 256 (602)
++++++|+|..++++.+..+...++.+.|++|++|+.+|+.++.+|||.+|.|+++.. .++++..+..+++|++ ||+
T Consensus 3 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~~~g~ 82 (220)
T 3dv8_A 3 SFENYFPLWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILSDEGREITLYRLFDMDMCLLSA 82 (220)
T ss_dssp --CCSCGGGGTSCHHHHHHHHTTCEEEEECTTCEEEEGGGCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESGGG
T ss_pred chHHhChhhhcCCHHHHHHHHhhCceEEeCCCCEEECCCCCcceEEEEEeceEEEEEECCCCCEEEEEecCCCCeeehhH
Confidence 5789999999999999999999999999999999999999999999999999999975 4457888999999999 799
Q ss_pred hhhhcCCCceeEEEEcceeEEEEeeHHHHHHHHHhChHHHHHHHHHHHHhhh
Q 038432 257 VGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHK 308 (602)
Q Consensus 257 ~~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~ll~~~~ 308 (602)
.+++.+.+++.++.|.++++++.++.+.|.+++..+|.....+++.+..+..
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~ 134 (220)
T 3dv8_A 83 SCIMRSIQFEVTIEAEKDTDLWIIPAEIYKGIMKDSAPVANYTNELMATRFS 134 (220)
T ss_dssp GGGCTTCCCCCEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCCceEEEEeeeeEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998887776655543
No 137
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=99.58 E-value=2.8e-15 Score=129.24 Aligned_cols=116 Identities=15% Similarity=0.235 Sum_probs=104.0
Q ss_pred hhhhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEeccCceeEEE--EeCCCCeeehh
Q 038432 180 HTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVG--TLQTGDMFGEV 257 (602)
Q Consensus 180 ~~l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~~~~~~~--~l~~g~~fGe~ 257 (602)
++++++|+|..++++.+..++..++.+.|++|++|+++||.++.+|||.+|.|++....++++..+. .+.+|++||+.
T Consensus 6 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe~ 85 (137)
T 1wgp_A 6 SGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFYNRSLLKEGDFCGDE 85 (137)
T ss_dssp CSCSSCSGGGSCCHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEECCSSCSSSSSCEEECCTTCBSSTH
T ss_pred HHHHcCcchhhCCHHHHHHHHHHheEEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEEcCCCcceeeeeeeecCCCEecHH
Confidence 5788999999999999999999999999999999999999999999999999997644555665555 99999999999
Q ss_pred hh---hcCCC------ceeEEEEcceeEEEEeeHHHHHHHHHhChHH
Q 038432 258 GA---LCCRP------QIYTYRTKTLSQLLRLKTSALIEAMQSKQED 295 (602)
Q Consensus 258 ~l---l~~~~------~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~ 295 (602)
++ +.+.+ ++.+++|.++++++.+++++|.+++.++|..
T Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l 132 (137)
T 1wgp_A 86 LLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQFRRS 132 (137)
T ss_dssp HHHHHHCSSCCSSSCBCSSEEEESSCBEEEEEEHHHHHHHHHHHCCC
T ss_pred HHHHHhccccccccccceeEEEEeEEEEEEEECHHHHHHHHHHCHhh
Confidence 85 77774 5789999999999999999999999888753
No 138
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=99.57 E-value=2.3e-14 Score=143.64 Aligned_cols=130 Identities=16% Similarity=0.126 Sum_probs=119.8
Q ss_pred hHhhhhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEeccCceeEEEEeCCCCeeehh
Q 038432 178 FLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFGEV 257 (602)
Q Consensus 178 ~~~~l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~fGe~ 257 (602)
..++++++|+|+.++++.+..++..++.+.|++|++|+++||.++.+|||.+|.|+++....+....+..+.+|++||+.
T Consensus 11 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~G~~fGe~ 90 (333)
T 4ava_A 11 RVEDLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVAIIARALPGMIVGEI 90 (333)
T ss_dssp CHHHHTTSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCCEEEEEECCEEEEEECTTCCEEEEEECTTCEESHH
T ss_pred hHHHHhCCHhHhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCcCCEEEEEEeeEEEEEEECCCCcEEEEEecCCCEeeHH
Confidence 34788999999999999999999999999999999999999999999999999999997655444489999999999999
Q ss_pred hhhcCCCceeEEEEcceeEEEEeeHHHHHHHHHhChHHHHHHHHHHHHhhh
Q 038432 258 GALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHK 308 (602)
Q Consensus 258 ~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~ll~~~~ 308 (602)
+++.+.+++.+++|.+++.++.++++.|.+++ ++|.....+++.+.+...
T Consensus 91 ~l~~~~~~~~~v~A~~~~~~~~i~~~~~~~l~-~~p~~~~~~~~~~~~~~~ 140 (333)
T 4ava_A 91 ALLRDSPRSATVTTIEPLTGWTGGRGAFATMV-HIPGVGERLLRTARQRLA 140 (333)
T ss_dssp HHHHTCBCSSEEEESSCEEEEEECHHHHHHHH-HSTTHHHHHHHHHHHHHH
T ss_pred HhcCCCCceEEEEEecCEEEEEEcHHHHHHHH-hChHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 999999888887776655
No 139
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=99.56 E-value=2.2e-14 Score=124.08 Aligned_cols=106 Identities=22% Similarity=0.405 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCCCCchHHHHHHHHHHHHHHHhhcccCccccccchhHHHHHHHHHHH
Q 038432 15 DIILVHCAGCLYYLLADRYPHKGETWLGSVNPNFTETSLWIRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFN 94 (602)
Q Consensus 15 ~l~~~H~~aC~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~Y~~s~ywa~~t~~tvGygd~~~~~~~e~~~~~~~~~~g 94 (602)
++++.+++||++|.... .| .|.+|+||+++|+||+||||+.|.|..+++++++++++|
T Consensus 33 ~~~~~~~~g~~~~~~~e-------~~---------------~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g 90 (148)
T 3vou_A 33 LTFLTLTSGTIFYSTVE-------GL---------------RPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIG 90 (148)
T ss_dssp HHHHHHHHHHHHHHHTS-------CC---------------CHHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc-------CC---------------CHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHH
Confidence 56666777777776431 12 488999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH------HHHh----hhHhHHHHhhhHHHHHhhhhcCCCChhHHHH
Q 038432 95 LGLTAYLIGNMTN------LVVE----GTRRTMEFRNSIEAASNFVGRNRLPPRLKKQ 142 (602)
Q Consensus 95 ~~~~~~~i~~i~~------~~~~----~~~~~~~~~~~~~~~~~~m~~~~l~~~l~~r 142 (602)
+.+++++++.+.. +... .+....+..++++.+++++++++.|++|+.|
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~i~~~~~~~~~~~~L~~R 148 (148)
T 3vou_A 91 IGLVFGFIHKLAVNVQLPSILSNRKKETDAYRLEVMEKLEAIEKKLAEHSRQGSLVPR 148 (148)
T ss_dssp HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCC
Confidence 9999999999876 3322 2344455567788899999999999998765
No 140
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.56 E-value=1.5e-14 Score=142.54 Aligned_cols=137 Identities=17% Similarity=0.204 Sum_probs=125.8
Q ss_pred HhhHhhhhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEec--cCceeEEEEeCCCCe
Q 038432 176 HLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYE--MEKEIAVGTLQTGDM 253 (602)
Q Consensus 176 ~~~~~~l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~--~~~~~~~~~l~~g~~ 253 (602)
.....+++++|+|..++++.+..++..++.+.|.+|++|+++||.++.+|+|.+|.|+++... ++++..+..+++|++
T Consensus 153 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~~~~~~~~~g~~~~~~~l~~G~~ 232 (299)
T 3shr_A 153 TEYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDSPNEDPVFLRTLGKGDW 232 (299)
T ss_dssp HHHHHHHTTSHHHHHSCHHHHHHHTTTCEEEEECTTCEEECTTCEECEEEEEEESEEEEEECCSSSCCCEEEEEEETTCE
T ss_pred HHHHHHHhhCHHhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCCEEEEEEeeEEEEEEecCCCCcceEEEEcCCCCE
Confidence 455678899999999999999999999999999999999999999999999999999999765 557788999999999
Q ss_pred eehhhhhcCCCceeEEEEcceeEEEEeeHHHHHHHHHhChHHHHHHHHHHHHhhhhhhc
Q 038432 254 FGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHKKLKD 312 (602)
Q Consensus 254 fGe~~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~ll~~~~~~~~ 312 (602)
||+.+++.+.+++++++|.+++.++.+++++|.+++..+|+....+++.+..+......
T Consensus 233 fGe~~ll~~~~~~~tv~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~r~~~~~~ 291 (299)
T 3shr_A 233 FGEKALQGEDVRTANVIAAEAVTCLVIDRDSFKHLIGGLDDVSNKAYEDAEAKAKYEAE 291 (299)
T ss_dssp ECGGGGSSSEECSSEEEESSSEEEEEEEHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHH
T ss_pred eChHHHhCCCCcceEEEECCCEEEEEEeHHHHHHHHccHHHHHHHHHHHHhhhhhcchh
Confidence 99999999999999999999999999999999999999999998888888777665543
No 141
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=99.55 E-value=4.4e-14 Score=133.70 Aligned_cols=127 Identities=12% Similarity=0.124 Sum_probs=114.6
Q ss_pred hhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEec-cCceeEEEEeCCCCeeehhhhhc
Q 038432 183 EKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYE-MEKEIAVGTLQTGDMFGEVGALC 261 (602)
Q Consensus 183 ~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~-~~~~~~~~~l~~g~~fGe~~ll~ 261 (602)
.++|+|..++++.+..+...++.+.|++|++|+++|++++.+|||.+|.|+++... ++++..+..+.+|++||+.+++.
T Consensus 13 ~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~~~~ 92 (232)
T 2gau_A 13 LLRDVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFHISRIVKPGQFFGMRPYFA 92 (232)
T ss_dssp GSHHHHTTCCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC-----CCCEEEEECTTCEESHHHHHH
T ss_pred cccHhhhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEeCCCCEeeeehhhC
Confidence 46899999999999999999999999999999999999999999999999998643 45778899999999999999999
Q ss_pred CCCceeEEEEcceeEEEEeeHHHHHHHHHhChHHHHHHHHHHHHhhhh
Q 038432 262 CRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHKK 309 (602)
Q Consensus 262 ~~~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~ll~~~~~ 309 (602)
+.+++.++.|.++++++.++.+.|.+++..+|.....+++.+..+...
T Consensus 93 ~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~ 140 (232)
T 2gau_A 93 EETCSSTAIAVENSKVLAIPVEAIEALLKGNTSFCRYFLKALAKELGY 140 (232)
T ss_dssp TSCCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred CCCcceEEEEecceEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988888776665443
No 142
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=99.55 E-value=2.3e-15 Score=129.21 Aligned_cols=124 Identities=15% Similarity=0.126 Sum_probs=106.7
Q ss_pred HHHHHHHHHHhhHhhhhhhcccccCCHHHHHHHHHhccceecC-CCCeEEccCCCCCeEEEEEEeEEEEEEeccCceeEE
Q 038432 167 KSICKSICQHLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIP-PREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAV 245 (602)
Q Consensus 167 ~~l~~~v~~~~~~~~l~~~~~f~~~s~~~l~~l~~~~~~~~~~-~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~~~~~~ 245 (602)
|+.|.+-......++++++++|..++++.+..++..++.+.|. +|++|+++|+.++.+|||.+|.|+++.. +++.
T Consensus 3 p~~r~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~-~g~~--- 78 (134)
T 2d93_A 3 SGSSGDDDIEQLLEFMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNGTVEISHP-DGKV--- 78 (134)
T ss_dssp CSCCSTTHHHHHHHHHHHSSTTTSSCHHHHHHHTTTEEEEEECSSSCEEECTTCEECEEEECCBSCEEEECS-SSCE---
T ss_pred hhhcCHHHHHHHHHHHhCCcchhhCCHHHHHHHHHhheEEEecCCCCEEEeCCCCCCeEEEEEeCEEEEEcC-CCcE---
Confidence 3334333344555788999999999999999999999999999 9999999999999999999999999963 3333
Q ss_pred EEeCCCCeeehhhhhcCCCceeEE-EEcceeEEEEeeHHHHHHHHHhChH
Q 038432 246 GTLQTGDMFGEVGALCCRPQIYTY-RTKTLSQLLRLKTSALIEAMQSKQE 294 (602)
Q Consensus 246 ~~l~~g~~fGe~~ll~~~~~~~tv-~a~~~~~l~~l~~~~~~~~l~~~~~ 294 (602)
..+.+|++||+.+++.+.++..++ .|.+.+.++.++++.|.+++...++
T Consensus 79 ~~l~~G~~fG~~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~ 128 (134)
T 2d93_A 79 ENLFMGNSFGITPTLDKQYMHGIVRTKVDDCQFVCIAQQDYWRILNHVEK 128 (134)
T ss_dssp EEECTTCEESCCSSSCCEECCSEEEESSSSEEEEEEEHHHHHHHSSCCSS
T ss_pred EEecCCCccChhHhcCCCcceeEEEEEecceEEEEEeHHHHHHHHHHHHh
Confidence 568999999999999999888888 9999999999999999988876653
No 143
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=99.55 E-value=1.4e-14 Score=136.58 Aligned_cols=130 Identities=18% Similarity=0.230 Sum_probs=119.4
Q ss_pred HhhhhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEec-cCceeEEEEeCCCCeeehh
Q 038432 179 LHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYE-MEKEIAVGTLQTGDMFGEV 257 (602)
Q Consensus 179 ~~~l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~-~~~~~~~~~l~~g~~fGe~ 257 (602)
.++++++|+|.+++++.+..+...++.+.|++|++|+.+|++++.+|||.+|.|+++... ++++..+..+++|++||+.
T Consensus 8 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~ 87 (227)
T 3dkw_A 8 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAEA 87 (227)
T ss_dssp HHHHTTSTTTSSSCHHHHHHHHTSCEEEECCTTEEEECTTSBCCEEEEEEESCEECCBCCGGGCCBCCCEECTTEEESCT
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeeeH
Confidence 468899999999999999999999999999999999999999999999999999998643 4577889999999999999
Q ss_pred hhhcCCC-ceeEEEEcceeEEEEeeHHHHHHHHHhChHHHHHHHHHHHHhhh
Q 038432 258 GALCCRP-QIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHK 308 (602)
Q Consensus 258 ~ll~~~~-~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~ll~~~~ 308 (602)
+++.+.+ +..++.|.+++.++.++++.|.+++..+|.....+++.+..+..
T Consensus 88 ~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~ 139 (227)
T 3dkw_A 88 MMFMDTPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLSTRLH 139 (227)
T ss_dssp TTTTTCSBCSSCEEESSCCEEEEEESHHHHHHHSSCTHHHHHHHHHHHHHHH
T ss_pred HhcCCCCCCceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHH
Confidence 9999999 89999999999999999999999999999998887777665543
No 144
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=99.55 E-value=9.7e-14 Score=131.14 Aligned_cols=131 Identities=21% Similarity=0.296 Sum_probs=108.3
Q ss_pred HhhhhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEec-cCceeEEEEeCCCCeeehh
Q 038432 179 LHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYE-MEKEIAVGTLQTGDMFGEV 257 (602)
Q Consensus 179 ~~~l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~-~~~~~~~~~l~~g~~fGe~ 257 (602)
...+++.++|..++++.+..+...++.+.|++|++|+.+|++++.+|||.+|.|+++... ++++..+..+.+|++||+.
T Consensus 10 ~~~lr~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~ 89 (230)
T 3iwz_A 10 TTTVRNATPSLTLDAGTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAEEDDDRELVLGYFGSGEFVGEM 89 (230)
T ss_dssp ------------CCHHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESCG
T ss_pred hhhhhhcchhccCCHHHHHHHHHhCeEEEeCCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEEeh
Confidence 457889999999999999999999999999999999999999999999999999999644 5678899999999999999
Q ss_pred hhhcCC-CceeEEEEcceeEEEEeeHHHHHHHHHhC-----hHHHHHHHHHHHHhhhh
Q 038432 258 GALCCR-PQIYTYRTKTLSQLLRLKTSALIEAMQSK-----QEDNVSILKNFLQQHKK 309 (602)
Q Consensus 258 ~ll~~~-~~~~tv~a~~~~~l~~l~~~~~~~~l~~~-----~~~~~~il~~ll~~~~~ 309 (602)
+++.+. +++.++.|.++++++.++.+.|.+++..+ |.....+++.+..+...
T Consensus 90 ~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~~~~~~p~~~~~~~~~l~~~l~~ 147 (230)
T 3iwz_A 90 GLFIESDTREVILRTRTQCELAEISYERLQQLFQTSLSPDAPRILYAIGVQLSKRLLD 147 (230)
T ss_dssp GGTSCCSBCCSEEEESSCEEEEEEEHHHHHHHHHTTTGGGHHHHHHHHHHHHHHHHHH
T ss_pred hhhcCCCCceeEEEEcCcEEEEEEeHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHH
Confidence 999875 78899999999999999999999999999 98888777766655433
No 145
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.54 E-value=2.3e-14 Score=147.33 Aligned_cols=124 Identities=18% Similarity=0.264 Sum_probs=115.4
Q ss_pred HHHHhhHhhhhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEeccCceeEEEEeCCCC
Q 038432 173 ICQHLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGD 252 (602)
Q Consensus 173 v~~~~~~~~l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~ 252 (602)
-......+.++++++|++++++.+..++..++.+.|.+|++|+++||.++.+|||.+|.|+++...++++..+..+.+|+
T Consensus 138 ~~~~~i~~~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~qGd~~d~~YiI~sG~v~v~~~~~G~~~~v~~l~~G~ 217 (416)
T 3tnp_B 138 DQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRG 217 (416)
T ss_dssp HHHHHHHHHHTTSHHHHTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECEEEEEEECSSCEEEEEEEESCC
T ss_pred HHHHHHHHHHhCCHhHhcCCHHHHHHHHHhcEEEEeCCCCEEEeCCCCCceEEEEEeeEEEEEEecCCCEEEEEEecCCC
Confidence 34456678899999999999999999999999999999999999999999999999999999987677788999999999
Q ss_pred eeehhhhhcCCCceeEEEEcceeEEEEeeHHHHHHHHHhChHHH
Q 038432 253 MFGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDN 296 (602)
Q Consensus 253 ~fGe~~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~ 296 (602)
+||+.+++.+.++.++++|.++|.++.++++.|.+++..++...
T Consensus 218 ~fGe~all~~~pr~atv~A~~d~~l~~i~r~~f~~ll~~~~~~~ 261 (416)
T 3tnp_B 218 SFGELALMYNTPKAATITATSPGALWGLDRVTFRRIIVKNNAKK 261 (416)
T ss_dssp EECGGGGTSCCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHHH
T ss_pred EEeeHHHhcCCCcccEEEEccCeEEEEEeehhhhhhhhcchhHH
Confidence 99999999999999999999999999999999999998887654
No 146
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.51 E-value=1.9e-13 Score=134.12 Aligned_cols=129 Identities=19% Similarity=0.270 Sum_probs=117.4
Q ss_pred HhhHhhhhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEeccCceeEEEEeCCCCeee
Q 038432 176 HLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFG 255 (602)
Q Consensus 176 ~~~~~~l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~fG 255 (602)
....++++++|+|+.++++.+..++..++.+.|++|++|+++||.++.+|+|.+|.|+++. ++ ..+..+.+|++||
T Consensus 35 ~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~-~g---~~~~~l~~G~~fG 110 (291)
T 2qcs_B 35 AALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV-NN---EWATSVGEGGSFG 110 (291)
T ss_dssp HHHHHHTTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEE-TT---EEEEEECTTCEEC
T ss_pred HHHHHHHhcChhhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCceEEEEeeeEEEEEE-CC---eEEEEcCCCCccc
Confidence 4556789999999999999999999999999999999999999999999999999999987 22 5788999999999
Q ss_pred hhhhhcCCCceeEEEEcceeEEEEeeHHHHHHHHHhChHHHHHHHHHHHHhhh
Q 038432 256 EVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHK 308 (602)
Q Consensus 256 e~~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~ll~~~~ 308 (602)
+.+++.+.++..+++|.+++.++.++++.|.+++..+|.........++.+..
T Consensus 111 e~~l~~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 163 (291)
T 2qcs_B 111 ELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKMYEEFLSKVS 163 (291)
T ss_dssp GGGGTCCCBCSSEEEESSCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHTCG
T ss_pred hHHHhcCCCCceEEEECCCEEEEEEEhHHHHHHHhhhHHHHHHHHHHHHhhch
Confidence 99999999999999999999999999999999999999888777766665443
No 147
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.51 E-value=6.9e-14 Score=133.63 Aligned_cols=126 Identities=16% Similarity=0.298 Sum_probs=113.1
Q ss_pred hHhhhhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEeccCceeEEEEeCCCCeeehh
Q 038432 178 FLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFGEV 257 (602)
Q Consensus 178 ~~~~l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~fGe~ 257 (602)
..+.++++|+|++++++.+..++..++.+.|++|++|+++||.++.+|+|.+|.|+++..+ ..+..+++|++||+.
T Consensus 5 i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~v~~~~----~~~~~~~~g~~fGe~ 80 (246)
T 3of1_A 5 LEKSIRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYVND----NKVNSSGPGSSFGEL 80 (246)
T ss_dssp HHHHHHTCTTTTTSCHHHHHHHHTTCEEEEECTTCEEECTTCCCCEEEEEEECCEEEESTT----SCCEEECTTCEECHH
T ss_pred HHHHHhcCHhhHhCCHHHHHHHHHhhceEEECCCCEEEecCCCCCEEEEEEeeEEEEEECC----EEEEecCCCCeeehh
Confidence 3568899999999999999999999999999999999999999999999999999998632 236889999999999
Q ss_pred hhhcCCCceeEEEEcceeEEEEeeHHHHHHHHHhChHHHHHHHHHHHHhh
Q 038432 258 GALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQH 307 (602)
Q Consensus 258 ~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~ll~~~ 307 (602)
+++.+.+++++++|.+++.++.++++.|.+++..+|.........++...
T Consensus 81 ~l~~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ 130 (246)
T 3of1_A 81 ALMYNSPRAATVVATSDCLLWALDRLTFRKILLGSSFKKRLMYDDLLKSM 130 (246)
T ss_dssp HHHHTCCCSSEEEESSCEEEEEEEHHHHHHTTTTTTSHHHHHSHHHHHHC
T ss_pred HHhcCCCCCcEEEECCCeEEEEEEhHHHHHHHHHhHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999977666655555443
No 148
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.50 E-value=3.2e-13 Score=132.52 Aligned_cols=128 Identities=17% Similarity=0.319 Sum_probs=114.9
Q ss_pred HhhHhhhhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEecc--CceeEEEEeCCCCe
Q 038432 176 HLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEM--EKEIAVGTLQTGDM 253 (602)
Q Consensus 176 ~~~~~~l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~--~~~~~~~~l~~g~~ 253 (602)
.+...++.++++|..+++..+..++..++.+.|.+|++|+++|+.++.+|+|.+|.|++..... +++..+..+++|++
T Consensus 153 ~~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~~l~~G~~ 232 (291)
T 2qcs_B 153 KMYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDY 232 (291)
T ss_dssp HHHHHHHHTCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEECSTTSCEEEEEEECTTCE
T ss_pred HHHHHHHhhchHhhhCCHHHHHHHHhhcEEEEECCCCEEEeCCccCCEEEEEEeCEEEEEEecCCCCccEEEEEeCCCCE
Confidence 4455778899999999999999999999999999999999999999999999999999986443 24578999999999
Q ss_pred eehhhhhcCCCceeEEEEcceeEEEEeeHHHHHHHHHhChHHHHHHHHHH
Q 038432 254 FGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNF 303 (602)
Q Consensus 254 fGe~~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~l 303 (602)
||+.+++.+.+++++++|.+.++++.+++++|.+++..+|+.....+..+
T Consensus 233 fGe~~ll~~~~~~~tv~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~~~~~ 282 (291)
T 2qcs_B 233 FGEIALLMNRPKAATVVARGPLKCVKLDRPRFERVLGPCSDILKRNIQQY 282 (291)
T ss_dssp ECSGGGTCCCCCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTTSHHHH
T ss_pred ecHHHHcCCCCcceEEEECCcEEEEEEcHHHHHHHhccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998665555443
No 149
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=99.50 E-value=3.2e-13 Score=125.57 Aligned_cols=124 Identities=19% Similarity=0.277 Sum_probs=109.3
Q ss_pred cccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEe-ccCceeEEEEeCCCCeeehhhhhcCC-
Q 038432 186 YLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDY-EMEKEIAVGTLQTGDMFGEVGALCCR- 263 (602)
Q Consensus 186 ~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~-~~~~~~~~~~l~~g~~fGe~~ll~~~- 263 (602)
++++.+|++.+..+...++.+.|++|++|+.+|+.++.+|||.+|.|+++.. .++++..+..+.+|++||+.+++.+.
T Consensus 2 ~l~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~~~~~ 81 (210)
T 3ryp_A 2 VLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQ 81 (210)
T ss_dssp -----CCCHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTCCEEEEEEEETTCEESCTTTTSTTC
T ss_pred cCCCcCCHHHHHHHHHhcEEEEeCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeeeHHHhcCCC
Confidence 4567799999999999999999999999999999999999999999999975 45678899999999999999999988
Q ss_pred CceeEEEEcceeEEEEeeHHHHHHHHHhChHHHHHHHHHHHHhhhh
Q 038432 264 PQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHKK 309 (602)
Q Consensus 264 ~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~ll~~~~~ 309 (602)
++..++.|.++++++.++.+.|.+++..+|+....+++.+..+...
T Consensus 82 ~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~ 127 (210)
T 3ryp_A 82 ERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQV 127 (210)
T ss_dssp BCSSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHHHHH
T ss_pred CceEEEEECCcEEEEEEcHHHHHHHHHHChHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999988887766655433
No 150
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.50 E-value=1.7e-13 Score=130.92 Aligned_cols=117 Identities=17% Similarity=0.268 Sum_probs=108.4
Q ss_pred hhHhhhhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEeccCceeEEEEeCCCCeeeh
Q 038432 177 LFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFGE 256 (602)
Q Consensus 177 ~~~~~l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~fGe 256 (602)
+...+++++++|..+++..+..++..++.+.|.+|++|+++|+.++.+|+|.+|.|+++....+ .+..+++|++||+
T Consensus 122 ~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~I~~G~v~v~~~~~~---~~~~l~~g~~fGe 198 (246)
T 3of1_A 122 MYDDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIREGDQGENFYLIEYGAVDVSKKGQG---VINKLKDHDYFGE 198 (246)
T ss_dssp HSHHHHHHCGGGTTCCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEETTTE---EEEEEETTCEECH
T ss_pred HHHHHHhhChhhhcCCHHHHHHHHHhhheEEeCCCCEEEeCCCcCCEEEEEEecEEEEEEcCCc---eEEEcCCCCcccH
Confidence 4456788999999999999999999999999999999999999999999999999999976542 7889999999999
Q ss_pred hhhhcCCCceeEEEEcceeEEEEeeHHHHHHHHHhChHHH
Q 038432 257 VGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDN 296 (602)
Q Consensus 257 ~~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~ 296 (602)
.+++.+.++.++++|.+++.++.+++++|.+++...|+..
T Consensus 199 ~~~~~~~~~~~~v~a~~~~~~~~i~~~~f~~ll~~~~~~~ 238 (246)
T 3of1_A 199 VALLNDLPRQATVTATKRTKVATLGKSGFQRLLGPAVDVL 238 (246)
T ss_dssp HHHHHTCBCSSEEEESSCEEEEEEEHHHHHHHCTTHHHHH
T ss_pred HHHhCCCCcccEEEECCCEEEEEEeHHHHHHHhccHHHHH
Confidence 9999999999999999999999999999999999887654
No 151
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=99.49 E-value=5.2e-14 Score=121.53 Aligned_cols=63 Identities=27% Similarity=0.445 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHhhcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhH
Q 038432 54 WIRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRT 116 (602)
Q Consensus 54 ~~~Y~~s~ywa~~t~~tvGygd~~~~~~~e~~~~~~~~~~g~~~~~~~i~~i~~~~~~~~~~~ 116 (602)
+..|.+|+||+++|+||+||||+.|.|..+++++++++++|+.+++++++.+.+.+.+...+.
T Consensus 82 ~~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~~~~~~ 144 (155)
T 2a9h_A 82 LISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVGREQER 144 (155)
T ss_dssp TTSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC--
T ss_pred cCcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346899999999999999999999999999999999999999999999999999888765433
No 152
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=99.49 E-value=1.1e-13 Score=129.71 Aligned_cols=124 Identities=13% Similarity=0.147 Sum_probs=112.9
Q ss_pred HhhhhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEeccCceeEEEEeCCCCeeehhh
Q 038432 179 LHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFGEVG 258 (602)
Q Consensus 179 ~~~l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~fGe~~ 258 (602)
+.+++++|+|..++++.+..+...++.+.|++|++|+.+||.++.+|||.+|.|+++...++++..+..+.+|++||+
T Consensus 3 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~~~~~~~G~~~G~-- 80 (220)
T 2fmy_A 3 QMRLTDTNLLEVLNSEEYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKSGRVRVYLAYEDKEFTLAILEAGDIFCT-- 80 (220)
T ss_dssp TTCSCSSCHHHHTTSGGGTTTGGGSEEEEECTTCEEECTTCSSCEEEEEEESEEEEEEECSSCEEEEEEEETTCEEES--
T ss_pred hhhhhcChhhhcCCHHHHHHHHHhhheeEeCCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEEEEEEcCCCCEeCC--
Confidence 357889999999999999999999999999999999999999999999999999997556678889999999999999
Q ss_pred hhcCCCceeEEEEcceeEEEEeeHHHHHHHHHhChHHHHHHHHHHHHhhhh
Q 038432 259 ALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHKK 309 (602)
Q Consensus 259 ll~~~~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~ll~~~~~ 309 (602)
+++.++.|.++++++.++.+.|.+++..+|+....+++.+..+...
T Consensus 81 -----~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~~~~~ 126 (220)
T 2fmy_A 81 -----HTRAFIQAMEDTTILYTDIRNFQNIVVEFPAFSLNMVKVLGDLLKN 126 (220)
T ss_dssp -----CSSSEEEESSSEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHHHHH
T ss_pred -----ccceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHH
Confidence 7889999999999999999999999999999988887776555433
No 153
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=99.48 E-value=7.9e-13 Score=122.60 Aligned_cols=119 Identities=18% Similarity=0.290 Sum_probs=106.5
Q ss_pred CCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEec-cCceeEEEEeCCCCeeehhhhhcCC----Cc
Q 038432 191 VSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYE-MEKEIAVGTLQTGDMFGEVGALCCR----PQ 265 (602)
Q Consensus 191 ~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~-~~~~~~~~~l~~g~~fGe~~ll~~~----~~ 265 (602)
+|++.+..+...++.+.|++|++|+.+|+.++.+|||.+|.|+++... ++++..+..+.+|++||+.+++.+. ++
T Consensus 1 l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~~~~~~~~~~~~~ 80 (207)
T 2oz6_A 1 MKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLFEKEGSEQER 80 (207)
T ss_dssp CCHHHHHHHHHSSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEESCTTTCC-----CBC
T ss_pred CCHHHHHHHHhhcceEEECCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCCcccHHHhcCCCCCCCc
Confidence 588999999999999999999999999999999999999999999754 4678899999999999999999988 78
Q ss_pred eeEEEEcceeEEEEeeHHHHHHHHHhChHHHHHHHHHHHHhhhh
Q 038432 266 IYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHKK 309 (602)
Q Consensus 266 ~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~ll~~~~~ 309 (602)
+.++.|.++++++.++.+.|.+++..+|.....+++.+..+...
T Consensus 81 ~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~~~~ 124 (207)
T 2oz6_A 81 SAWVRAKVECEVAEISYAKFRELSQQDSEILYTLGSQMADRLRK 124 (207)
T ss_dssp CSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred ceEEEECCcEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999888777766655433
No 154
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.47 E-value=2e-13 Score=138.85 Aligned_cols=131 Identities=20% Similarity=0.256 Sum_probs=118.5
Q ss_pred HhhHhhhhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEeccCceeEEEEeCCCCeee
Q 038432 176 HLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFG 255 (602)
Q Consensus 176 ~~~~~~l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~fG 255 (602)
....+.++++++|++++++.+..++..++.+.|.+|++|+++||.++.+|+|.+|.|+++.. ...+..+.+|++||
T Consensus 126 ~~i~~~l~~~~lF~~L~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~~~~~yiI~~G~v~v~~~----~~~v~~l~~G~~fG 201 (381)
T 4din_B 126 TALAKAISKNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQGEVDVYVN----GEWVTNISEGGSFG 201 (381)
T ss_dssp HHHHHHHTTCTTSSSCCHHHHHHHHHHCEEEECCTTCBSSCTTSBCCEEEECSSSEEEEEET----TEEEEEEESSCCBC
T ss_pred HHHHHHHhCChhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEeeEEEEEEC----CeEeeeCCCCCEEE
Confidence 44567899999999999999999999999999999999999999999999999999999962 24678899999999
Q ss_pred hhhhhcCCCceeEEEEcceeEEEEeeHHHHHHHHHhChHHHHHHHHHHHHhhhhh
Q 038432 256 EVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHKKL 310 (602)
Q Consensus 256 e~~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~ll~~~~~~ 310 (602)
+.+++.+.++.++++|.++|.++.++++.|.+++..+|......+..++.+....
T Consensus 202 e~all~~~~r~atv~A~~~~~l~~i~~~~f~~ll~~~~~~~~~~~~~~L~~v~~f 256 (381)
T 4din_B 202 ELALIYGTPRAATVKAKTDLKLWGIDRDSYRRILMGSTLRKRKMYEEFLSKVSIL 256 (381)
T ss_dssp GGGGTSCCBCSSEEEESSSCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCSTT
T ss_pred chHHhcCCCcceEEEECCCEEEEEEchHHHHHhhhhhhHHHHHHHHHHhhhhHHH
Confidence 9999999999999999999999999999999999999988877777666654433
No 155
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=99.46 E-value=2.8e-13 Score=112.53 Aligned_cols=60 Identities=25% Similarity=0.421 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHhhcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 038432 55 IRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTR 114 (602)
Q Consensus 55 ~~Y~~s~ywa~~t~~tvGygd~~~~~~~e~~~~~~~~~~g~~~~~~~i~~i~~~~~~~~~ 114 (602)
..|.+|+||+++|+||+||||+.|.|..+++++++++++|+.++++.++.+.+.+.+..+
T Consensus 60 ~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~~~ 119 (122)
T 2ih3_C 60 ITYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQ 119 (122)
T ss_dssp CSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358999999999999999999999999999999999999999999999999998877553
No 156
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=99.46 E-value=1.8e-13 Score=117.11 Aligned_cols=58 Identities=28% Similarity=0.469 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHhhcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 038432 56 RYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGT 113 (602)
Q Consensus 56 ~Y~~s~ywa~~t~~tvGygd~~~~~~~e~~~~~~~~~~g~~~~~~~i~~i~~~~~~~~ 113 (602)
.|..|+||+++|+|||||||+.|.|..+++++++++++|+.+++++++.+...+.+..
T Consensus 40 ~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~~~~~~ 97 (139)
T 3eff_K 40 TYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGRE 97 (139)
T ss_dssp CHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTHHH
T ss_pred CHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5889999999999999999999999999999999999999999999999988775543
No 157
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.46 E-value=1.9e-13 Score=140.49 Aligned_cols=128 Identities=16% Similarity=0.251 Sum_probs=111.0
Q ss_pred HhhHhhhhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEecc-------CceeEEEEe
Q 038432 176 HLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEM-------EKEIAVGTL 248 (602)
Q Consensus 176 ~~~~~~l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~-------~~~~~~~~l 248 (602)
.++..+++++++|..+++..+..++..++.+.|.+|++|+++|+.++.+|||.+|.|+++.... +++..+..+
T Consensus 263 ~~~~~~L~~v~lf~~Ls~~el~~L~~~l~~~~~~~Ge~I~~eGd~~~~~yiI~sG~v~v~~~~~~~~~~~~g~~~~l~~l 342 (416)
T 3tnp_B 263 KMYESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGAVEIARC 342 (416)
T ss_dssp SSSSSSGGGCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEECC------------CEEEEE
T ss_pred HHHHHHHhhchHhhcCCHHHHHHHHhhceEEEECCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCcccccCCceeEEEEe
Confidence 3455678999999999999999999999999999999999999999999999999999986543 567789999
Q ss_pred CCCCeeehhhhhcCCCceeEEEEcceeEEEEeeHHHHHHHHHhChHHHHHHHHHH
Q 038432 249 QTGDMFGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNF 303 (602)
Q Consensus 249 ~~g~~fGe~~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~l 303 (602)
++|++||+.+++.+.++.++++|.+.+.++.|+++.|.+++..+|+.....+..+
T Consensus 343 ~~G~~fGE~all~~~~r~~tv~A~~~~~ll~I~~~~f~~ll~~~p~i~~~~~~~~ 397 (416)
T 3tnp_B 343 FRGQYFGELALVTNKPRAASAHAIGTVKCLAMDVQAFERLLGPCMEIMKRNIATY 397 (416)
T ss_dssp CTTCEESGGGGTCCSCCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTCC----
T ss_pred CCCCEecHHHHhCCCCceeEEEEcCCeEEEEEEHHHHHHHhcchHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999987665544443
No 158
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.45 E-value=3.4e-13 Score=137.15 Aligned_cols=129 Identities=20% Similarity=0.334 Sum_probs=116.2
Q ss_pred HHhhHhhhhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEecc--CceeEEEEeCCCC
Q 038432 175 QHLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEM--EKEIAVGTLQTGD 252 (602)
Q Consensus 175 ~~~~~~~l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~--~~~~~~~~l~~g~ 252 (602)
..++..+++++++|..+++..+..++..++.+.|.+|++|+++|+.++.+|||.+|.|+++.... ++...+..+++|+
T Consensus 243 ~~~~~~~L~~v~~f~~Ls~~el~~l~~~~~~~~~~~ge~I~~eGd~~~~~yiI~~G~v~v~~~~~~~~~~~~v~~l~~Gd 322 (381)
T 4din_B 243 RKMYEEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQRRSPNEEYVEVGRLGPSD 322 (381)
T ss_dssp HHHHHHHHHHCSTTTTCCTTHHHHHHTTCBCCCBCSSCBSSCTTSBCCEEEEEEESCEEEECCSSSSSCCCEEEEECTTC
T ss_pred HHHHHHHhhhhHHHHhccHHHHHHHHHhhhhccCCCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCCCceEEEEEeCCCC
Confidence 34566788999999999999999999999999999999999999999999999999999997542 2356799999999
Q ss_pred eeehhhhhcCCCceeEEEEcceeEEEEeeHHHHHHHHHhChHHHHHHHHHH
Q 038432 253 MFGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNF 303 (602)
Q Consensus 253 ~fGe~~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~l 303 (602)
+||+.+++.+.++.++++|.+.+.++.++++.|.+++..+|+.....+..+
T Consensus 323 ~fGe~all~~~~r~~tv~A~~~~~ll~i~~~~f~~ll~~~~~i~~~~~~~~ 373 (381)
T 4din_B 323 YFGEIALLLNRPRAATVVARGPLKCVKLDRPRFERVLGPCSEILKRNIQRY 373 (381)
T ss_dssp EECTTGGGSCCBCSSEEEESSCBEEEEEEHHHHHHHHCCHHHHHHTTHHHH
T ss_pred EechHHHhCCCCceeEEEEcCCEEEEEEeHHHHHHHHhhhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998766555443
No 159
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=99.44 E-value=1.3e-12 Score=125.64 Aligned_cols=121 Identities=19% Similarity=0.290 Sum_probs=107.4
Q ss_pred ccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEe-ccCceeEEEEeCCCCeeehhhhhcCC-Cce
Q 038432 189 KDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDY-EMEKEIAVGTLQTGDMFGEVGALCCR-PQI 266 (602)
Q Consensus 189 ~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~-~~~~~~~~~~l~~g~~fGe~~ll~~~-~~~ 266 (602)
..++++.+..+...++.+.|++|++|+.+|+.++.+|||.+|.|+++.. .++++..+..+.+|++||+.+++.+. +++
T Consensus 55 ~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~~~G~~~Ge~~~~~~~~~~~ 134 (260)
T 3kcc_A 55 KPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERS 134 (260)
T ss_dssp ----CHHHHHHHTTSEEEEECTTCEEECTTCBCCEEEEEEECEEEEEEECTTCCEEEEEEEETTCEESCTTTTSTTCBCC
T ss_pred CCCCHHHHHHHHhhCEEEEECCCCEEECCCCcCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehHHhCCCCCCc
Confidence 4589999999999999999999999999999999999999999999975 45678899999999999999999988 789
Q ss_pred eEEEEcceeEEEEeeHHHHHHHHHhChHHHHHHHHHHHHhhhh
Q 038432 267 YTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHKK 309 (602)
Q Consensus 267 ~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~ll~~~~~ 309 (602)
.+++|.++|.++.++++.|.+++..+|.....+++.+..+...
T Consensus 135 ~~~~A~~~~~l~~i~~~~~~~l~~~~p~l~~~l~~~l~~~l~~ 177 (260)
T 3kcc_A 135 AWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQV 177 (260)
T ss_dssp SEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHHHHH
T ss_pred eEEEECCCeEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988877766655433
No 160
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=99.44 E-value=2.4e-13 Score=127.69 Aligned_cols=122 Identities=11% Similarity=0.082 Sum_probs=110.2
Q ss_pred hhhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEeccCceeEEEEeCCCCeeehhhhh
Q 038432 181 TVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFGEVGAL 260 (602)
Q Consensus 181 ~l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~fGe~~ll 260 (602)
+++++|+|..++++.+..++..++.+.|++|++|+.+|++++.+|||.+|.|+++...++++..+..+.+|++||
T Consensus 1 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~~~~~~~G~~fG----- 75 (222)
T 1ft9_A 1 MPPRFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVYLVGEEREISLFYLTSGDMFC----- 75 (222)
T ss_dssp -CCCCCTHHHHTSTTTTTTTTTCEEEEECTTCEEECTTCCCCCEEEEEESEEEEEEEETTEEEEEEEEETTCEEE-----
T ss_pred CcccchhhhcCCHHHHHHHHhhCcEEEECCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEEEEEEcCCCCEec-----
Confidence 467889999999999999999999999999999999999999999999999999855566888999999999999
Q ss_pred cCCCceeEEEEcceeEEEEeeHHHHHHHHHhChHHHHHHHHHHHHhhhh
Q 038432 261 CCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHKK 309 (602)
Q Consensus 261 ~~~~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~ll~~~~~ 309 (602)
.+++.++.|.++++++.++++.|.+++..+|.....+++.+..+...
T Consensus 76 --~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~ 122 (222)
T 1ft9_A 76 --MHSGCLVEATERTEVRFADIRTFEQKLQTCPSMAWGLIAILGRALTS 122 (222)
T ss_dssp --SCSSCEEEESSCEEEEEECHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred --CCCCEEEEEccceEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999888887776655433
No 161
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=99.42 E-value=9.1e-13 Score=122.76 Aligned_cols=125 Identities=13% Similarity=0.122 Sum_probs=106.0
Q ss_pred hcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEe-ccCceeEEEEeCCCCeeehhhhhcCC
Q 038432 185 VYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDY-EMEKEIAVGTLQTGDMFGEVGALCCR 263 (602)
Q Consensus 185 ~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~-~~~~~~~~~~l~~g~~fGe~~ll~~~ 263 (602)
-|.|...++.....+...++.+.|++|++|+.+|+.++.+|||.+|.|+++.. .++++..+..+.+|++||+.+++.+.
T Consensus 4 ~~~~~~~~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~~~~~~~~ 83 (213)
T 1o5l_A 4 DKIHHHHHHMDLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLEIDEIKPVQIIASGFIFSSE 83 (213)
T ss_dssp ---------CCGGGGGGGSEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECTTSCEEEEEEECSSEESSGGGTTSSS
T ss_pred cccchhhccCCHHHHhcccEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEecCCCEeeeHHHhcCC
Confidence 47788888999999999999999999999999999999999999999999875 45678899999999999999999876
Q ss_pred -CceeEEEEcceeEEEEeeHHHHHHHHHhChHHHHHHHHHHHHhhhh
Q 038432 264 -PQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHKK 309 (602)
Q Consensus 264 -~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~ll~~~~~ 309 (602)
++..++.|.++++++.++++.|.+++..+|.....+++.+..+...
T Consensus 84 ~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~~~~ 130 (213)
T 1o5l_A 84 PRFPVNVVAGENSKILSIPKEVFLDLLMKDRELLLFFLKDVSEHFRV 130 (213)
T ss_dssp CBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEEccceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999988888776665443
No 162
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.41 E-value=9.5e-13 Score=138.43 Aligned_cols=134 Identities=16% Similarity=0.186 Sum_probs=120.5
Q ss_pred CCHHHHHHHHHHhhHhhhhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEeccC---c
Q 038432 165 LPKSICKSICQHLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEME---K 241 (602)
Q Consensus 165 lp~~l~~~v~~~~~~~~l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~---~ 241 (602)
.|+..|.+.......+.++++++|.+++++.+..++..++.+.|++|++|+++||.++.+|+|.+|.|+++....+ +
T Consensus 27 ~~~~~rt~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~Gd~~~~~y~i~~G~v~v~~~~~~g~~~ 106 (469)
T 1o7f_A 27 KRPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQD 106 (469)
T ss_dssp SCSTTCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEECSSSCGGG
T ss_pred CChhhCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCcEEEEEeeEEEEEEecCCCCCc
Confidence 4666677777777888999999999999999999999999999999999999999999999999999999975433 2
Q ss_pred eeEEEEeCCCCeeehhhhhcCCCceeEEEEcceeEEEEeeHHHHHHHHHhChHHHHHH
Q 038432 242 EIAVGTLQTGDMFGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSI 299 (602)
Q Consensus 242 ~~~~~~l~~g~~fGe~~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~i 299 (602)
+..+..+++|++||+.+ +.+.+++++++|.++|.++.++++.|.+++..+|.....+
T Consensus 107 ~~~~~~~~~G~~fGe~~-l~~~~~~~tv~A~~~~~l~~i~~~~~~~l~~~~p~~~~~l 163 (469)
T 1o7f_A 107 AVTICTLGIGTAFGESI-LDNTPRHATIVTRESSELLRIEQEDFKALWEKYRQYMAGL 163 (469)
T ss_dssp CEEEEEECTTCEECGGG-GGTCBCSSEEEESSSEEEEEEEHHHHHHHHHHHGGGTTTT
T ss_pred ceEEEEccCCCCcchhh-hCCCCccceEEEccceeEEEEcHHHHHHHHHhCHHHHHHH
Confidence 48899999999999999 9999999999999999999999999999999988755433
No 163
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=99.40 E-value=7.5e-13 Score=123.96 Aligned_cols=81 Identities=25% Similarity=0.426 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCCCCchHHHHHHHHHHHHHHHhhcccCccccccchhHHHHHHHHHHH
Q 038432 15 DIILVHCAGCLYYLLADRYPHKGETWLGSVNPNFTETSLWIRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFN 94 (602)
Q Consensus 15 ~l~~~H~~aC~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~Y~~s~ywa~~t~~tvGygd~~~~~~~e~~~~~~~~~~g 94 (602)
+++++|+.||++|++... .++ +.+.+|..|+||+++|+||+||||+.|.|..+++++++++++|
T Consensus 140 ~~~~~~~~~~~~~~~e~~---~~~-------------~~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G 203 (223)
T 1orq_C 140 VMLTVLYGAFAIYIVEYP---DPN-------------SSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTG 203 (223)
T ss_dssp HHHHHHHHHHHHHHTTSS---STT-------------CSCCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC---CcC-------------CCcCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHH
Confidence 566788999998876421 111 1233799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHh
Q 038432 95 LGLTAYLIGNMTNLVVE 111 (602)
Q Consensus 95 ~~~~~~~i~~i~~~~~~ 111 (602)
+.++++++|.+.+.+.+
T Consensus 204 ~~~~~~~i~~i~~~~~~ 220 (223)
T 1orq_C 204 ISALTLLIGTVSNMFQK 220 (223)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999988765
No 164
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=99.39 E-value=1.9e-12 Score=123.80 Aligned_cols=127 Identities=12% Similarity=0.054 Sum_probs=112.8
Q ss_pred hhhhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEe-ccCceeEEEEeCCCCeeehhh
Q 038432 180 HTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDY-EMEKEIAVGTLQTGDMFGEVG 258 (602)
Q Consensus 180 ~~l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~-~~~~~~~~~~l~~g~~fGe~~ 258 (602)
.++.++..|..+|++.+..+...++.+.|++|++|+.+|++++.+|||.+|.|+++.. .++++..+..+.+|++||+
T Consensus 9 ~~~~~~~p~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~-- 86 (250)
T 3e6c_C 9 DFCGAIIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDGSEKLLYYAGGNSLIGK-- 86 (250)
T ss_dssp CCCCCSSSBSCSCCGGGGGGGGGSEEEEECTTCEEECTTCCCCSEEEEEESCEEEEEECTTSCEEEEEEECTTCEECC--
T ss_pred hhhhhccchhhCCHHHHHHHHhhCeEEEECCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEee--
Confidence 3445555558899999999999999999999999999999999999999999999875 4567889999999999999
Q ss_pred hhcCCCceeEEEEcceeEEEEeeHHHHHHHHHhChHHHHHHHHHHHHhhhh
Q 038432 259 ALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHKK 309 (602)
Q Consensus 259 ll~~~~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~ll~~~~~ 309 (602)
++.+. ++.++.|.++++++.++.+.|.+++..+|+....+++.+..+...
T Consensus 87 ~l~~~-~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~ 136 (250)
T 3e6c_C 87 LYPTG-NNIYATAMEPTRTCWFSEKSLRTVFRTDEDMIFEIFKNYLTKVAY 136 (250)
T ss_dssp CSCCS-CCEEEEESSSEEEEEECHHHHHHHHHHCTHHHHHHHHHHHHHHHH
T ss_pred ecCCC-CceEEEEcccEEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHH
Confidence 77777 999999999999999999999999999999988887776665444
No 165
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.37 E-value=2.4e-12 Score=135.35 Aligned_cols=123 Identities=17% Similarity=0.243 Sum_probs=108.0
Q ss_pred HHhhHhhhhhhcccccCCHHHHHHHHHhccc-eecCCCCeEEccCCCCCeEEEEEEeEEEEEEeccCceeEEEEeCCCCe
Q 038432 175 QHLFLHTVEKVYLFKDVSKEIIVLLVAKMKA-EYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDM 253 (602)
Q Consensus 175 ~~~~~~~l~~~~~f~~~s~~~l~~l~~~~~~-~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~ 253 (602)
.....++++++++|.+++++.+..++..+.. +.|++|++|+++||.++.+|||.+|.|+++..+. ..+..+.+|++
T Consensus 332 ~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~~~~---~~~~~l~~G~~ 408 (469)
T 1o7f_A 332 LEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGK---GVVCTLHEGDD 408 (469)
T ss_dssp HHHHHHHHTTCGGGTTSCHHHHHHHHHHCEEEEECSTTCEEECTTSCCCEEEEEEESEEEEEETTT---EEEEEEETTCE
T ss_pred HHHHHHHHhcCHhhhhCCHHHHHHHHHHhheeeEecCCCEEEeCCCcCCeEEEEEEeEEEEEEcCC---eeEEEecCCCE
Confidence 3445678999999999999999999999985 5899999999999999999999999999987433 47889999999
Q ss_pred eehhhhhcCCCceeEEEEcc-eeEEEEeeHHHHHHHHHhChHHHHHHH
Q 038432 254 FGEVGALCCRPQIYTYRTKT-LSQLLRLKTSALIEAMQSKQEDNVSIL 300 (602)
Q Consensus 254 fGe~~ll~~~~~~~tv~a~~-~~~l~~l~~~~~~~~l~~~~~~~~~il 300 (602)
||+.+++.+.++.++++|.+ +|+++.+++++|.+++..+|.....+.
T Consensus 409 fGe~~ll~~~~~~~tv~a~~~~~~~~~i~~~~f~~ll~~~p~~~~~l~ 456 (469)
T 1o7f_A 409 FGKLALVNDAPRAASIVLREDNCHFLRVDKEDFNRILRDVEANTVRLK 456 (469)
T ss_dssp ECGGGGTCCSCCSSEEEESSSSEEEEEEEHHHHHHHHHHTTCC-----
T ss_pred EEEehhhcCCCceEEEEEecCCEEEEEEcHHHHHHHHHHChHHHHHHH
Confidence 99999999999999999998 799999999999999999997665543
No 166
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=99.35 E-value=4.5e-12 Score=103.64 Aligned_cols=58 Identities=33% Similarity=0.539 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHhhcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 038432 56 RYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGT 113 (602)
Q Consensus 56 ~Y~~s~ywa~~t~~tvGygd~~~~~~~e~~~~~~~~~~g~~~~~~~i~~i~~~~~~~~ 113 (602)
.|.+|+||+++|+||+||||+.|.|..+++++++.+++|+.++++.++.+.+.+....
T Consensus 49 ~~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~~~ 106 (114)
T 2q67_A 49 RPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPS 106 (114)
T ss_dssp CHHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred CHHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999999998775444
No 167
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.34 E-value=4.5e-12 Score=145.29 Aligned_cols=127 Identities=17% Similarity=0.218 Sum_probs=112.3
Q ss_pred HHHHHHHHhhHhhhhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEec---cCceeEE
Q 038432 169 ICKSICQHLFLHTVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYE---MEKEIAV 245 (602)
Q Consensus 169 l~~~v~~~~~~~~l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~---~~~~~~~ 245 (602)
-|.+-..+.....|+.+++|+++++..+..|+..++.+.|++|++||++||.++.+|+|.+|.|+|+..+ .+.+..+
T Consensus 31 ~Rt~edl~~I~~~Lk~~~~f~~l~~~~l~~l~~~m~ye~~~~Ge~IfrqGd~gd~fYIIlsGsV~V~i~~~~~~~~~~~v 110 (999)
T 4f7z_A 31 ERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQDAVTI 110 (999)
T ss_dssp SCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEECSSSCTTSCEEE
T ss_pred cCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHhheEEEEECCCCEEEcCCCcCCEEEEEEeeEEEEEEecCCCCCCceeE
Confidence 3433333455578899999999999999999999999999999999999999999999999999998643 2356789
Q ss_pred EEeCCCCeeehhhhhcCCCceeEEEEcceeEEEEeeHHHHHHHHHhChHHH
Q 038432 246 GTLQTGDMFGEVGALCCRPQIYTYRTKTLSQLLRLKTSALIEAMQSKQEDN 296 (602)
Q Consensus 246 ~~l~~g~~fGe~~ll~~~~~~~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~ 296 (602)
..+.+|++||+ +++.+.||+++++|.++|+++++++.+|..++..+|+..
T Consensus 111 ~~l~~G~sFGE-all~n~pRtaTv~a~~~s~l~~l~r~~F~~i~~~~~e~~ 160 (999)
T 4f7z_A 111 CTLGIGTAFGE-SILDNTPRHATIVTRESSELLRIEQEDFKALWEKYRQYM 160 (999)
T ss_dssp EEEETTCEECG-GGGGTCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHHH
T ss_pred EEecCCcchhh-hhccCCCcceEEEeccceEEEEEEHHHHHHHHHhChHHH
Confidence 99999999999 899999999999999999999999999999998887654
No 168
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=99.30 E-value=5.3e-13 Score=107.39 Aligned_cols=84 Identities=21% Similarity=0.182 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCCCCchHHHHHHHHHHHHHHHhhcccCccccccchhHHHHHHHHHHH
Q 038432 15 DIILVHCAGCLYYLLADRYPHKGETWLGSVNPNFTETSLWIRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFN 94 (602)
Q Consensus 15 ~l~~~H~~aC~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~Y~~s~ywa~~t~~tvGygd~~~~~~~e~~~~~~~~~~g 94 (602)
+++++...+++|+++.... + .+.+..|.+|+||+++|+||+||||+.|.+..+++++++++++|
T Consensus 15 ~~~~~~~~a~~~~~~E~~~---~-------------~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G 78 (103)
T 2k1e_A 15 LQKVLEEASKKAVEAERGA---P-------------GAALISYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAG 78 (103)
T ss_dssp HHHHHHHHHHHHHHHHTTS---T-------------TCCCCCGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhccCC---C-------------CcccccHHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHH
Confidence 5556666788888765321 1 11123577999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhH
Q 038432 95 LGLTAYLIGNMTNLVVEGTR 114 (602)
Q Consensus 95 ~~~~~~~i~~i~~~~~~~~~ 114 (602)
+.+++++++.+...+.+..+
T Consensus 79 ~~~~~~~~~~i~~~~~~~~~ 98 (103)
T 2k1e_A 79 IEVFALVTAALATDFVRREE 98 (103)
T ss_dssp HHHHHHTHHHHHTTGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999987766543
No 169
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=99.30 E-value=3.9e-11 Score=113.76 Aligned_cols=119 Identities=11% Similarity=0.123 Sum_probs=102.8
Q ss_pred cCCHHHHHHHHH--hccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEe-ccCceeEEEEeCCCCeeehhhhhcCCCc-
Q 038432 190 DVSKEIIVLLVA--KMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDY-EMEKEIAVGTLQTGDMFGEVGALCCRPQ- 265 (602)
Q Consensus 190 ~~s~~~l~~l~~--~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~-~~~~~~~~~~l~~g~~fGe~~ll~~~~~- 265 (602)
+++++.+..+.. .++.+.|++|++|+.+||.++.+|||.+|.|+++.. .++++.++..+ +|++||+.+++.+.+.
T Consensus 3 ~l~~~~l~~ll~~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~-~G~~~Ge~~~~~~~~~~ 81 (238)
T 2bgc_A 3 NAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYY-KGAFVIMSGFIDTETSV 81 (238)
T ss_dssp -CHHHHHHHHHHHTTCCCEEEETTCEEECTTCCCCEEEEEEESEEEEEEECTTSCEEEEEEE-ESSEEEESBCTTTCCBS
T ss_pred CCCHHHHHHHHHhCCceEEEECCCCEEEeCCCCCceEEEEEecEEEEEEECCCCCEEEEEEc-CCCEecchhhhcCCCcC
Confidence 578888888885 589999999999999999999999999999999875 44577888888 9999999999998864
Q ss_pred -eeEEEEc-ceeEEEEeeHHHHHHHHHhChHHHHHHHHHHHHhhhh
Q 038432 266 -IYTYRTK-TLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHKK 309 (602)
Q Consensus 266 -~~tv~a~-~~~~l~~l~~~~~~~~l~~~~~~~~~il~~ll~~~~~ 309 (602)
..++.+. +.++++.++++.|.+++..+|.....+++.+..+...
T Consensus 82 ~~~~~~a~~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~ 127 (238)
T 2bgc_A 82 GYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTLQKQVSY 127 (238)
T ss_dssp CCCEEEECSSEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred cceeEEEEEcceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHH
Confidence 6777777 5999999999999999999999988888776665443
No 170
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=99.29 E-value=4e-11 Score=114.03 Aligned_cols=116 Identities=17% Similarity=0.291 Sum_probs=103.1
Q ss_pred HHHHHHHHHhcc---ceecCCCCeEEccCCCCCeEEEEEEeEEEEEEe-ccCceeEEEEeCCCCeeehhhhhcCCCc--e
Q 038432 193 KEIIVLLVAKMK---AEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDY-EMEKEIAVGTLQTGDMFGEVGALCCRPQ--I 266 (602)
Q Consensus 193 ~~~l~~l~~~~~---~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~-~~~~~~~~~~l~~g~~fGe~~ll~~~~~--~ 266 (602)
+++++.+..... .+.|++|++|+.+|+.++.+|||.+|.|+++.. .++++..+..+.+|++||+.+++.+.+. .
T Consensus 30 ~~~l~~L~~~~~~~~~~~~~~ge~i~~~G~~~~~ly~v~~G~v~~~~~~~~G~~~~l~~~~~g~~~G~~~~~~~~~~~~~ 109 (243)
T 3la7_A 30 ANVFRQMATGAFPPVVETFERNKTIFFPGDPAERVYFLLKGAVKLSRVYEAGEEITVALLRENSVFGVLSLLTGNKSDRF 109 (243)
T ss_dssp HHHHHHHCCSSCCCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTCCEEEEEEECTTCEESCHHHHSSCCSBCC
T ss_pred HHHHHHHhhccchheeEEECCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEcchHHhCCCCCcce
Confidence 677788888888 999999999999999999999999999999864 4567889999999999999999998874 4
Q ss_pred eEEEEcceeEEEEeeHHHHHHHHHhChHHHHHHHHHHHHhhh
Q 038432 267 YTYRTKTLSQLLRLKTSALIEAMQSKQEDNVSILKNFLQQHK 308 (602)
Q Consensus 267 ~tv~a~~~~~l~~l~~~~~~~~l~~~~~~~~~il~~ll~~~~ 308 (602)
.+++|.++++++.++.+.|.+++..+|.....+++.+..+..
T Consensus 110 ~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~ 151 (243)
T 3la7_A 110 YHAVAFTPVELLSAPIEQVEQALKENPELSMLMLRGLSSRIL 151 (243)
T ss_dssp EEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred EEEEEccceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999998888776655543
No 171
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=99.29 E-value=1.1e-11 Score=134.62 Aligned_cols=127 Identities=17% Similarity=0.230 Sum_probs=112.3
Q ss_pred CHHHHHHHHHHhhHhhhhhhcccccCCHHHHHHHHHhcc-ceecCCCCeEEccCCCCCeEEEEEEeEEEEEEeccCceeE
Q 038432 166 PKSICKSICQHLFLHTVEKVYLFKDVSKEIIVLLVAKMK-AEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIA 244 (602)
Q Consensus 166 p~~l~~~v~~~~~~~~l~~~~~f~~~s~~~l~~l~~~~~-~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~~~~~ 244 (602)
++..|.+.......+.+.++++|.+++++.+..++..+. .+.|++|++|+++||.++.+|||.+|.|+++..+ + ..
T Consensus 18 ~p~~r~~~d~~~l~~~L~~~~lF~~Ls~~~l~~L~~~~~~~~~~~kGe~I~~eGd~~~~lyiIlsG~V~v~~~g--~-~i 94 (694)
T 3cf6_E 18 PPGQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYG--K-GV 94 (694)
T ss_dssp CGGGCCHHHHHHHHHHHTTCGGGTTSCHHHHHHHHTTCEEEEECSTTCEEECTTSBCCEEEEEEESEEEEEETT--T-EE
T ss_pred ChhhCCHHHHHHHHHHHHcChhhccCCHHHHHHHHHhcceEEEECCCCEEECCCCcCCeEEEEEEEEEEEEEeC--C-EE
Confidence 344444444445567899999999999999999999998 6899999999999999999999999999999753 2 58
Q ss_pred EEEeCCCCeeehhhhhcCCCceeEEEEcc-eeEEEEeeHHHHHHHHHhChHH
Q 038432 245 VGTLQTGDMFGEVGALCCRPQIYTYRTKT-LSQLLRLKTSALIEAMQSKQED 295 (602)
Q Consensus 245 ~~~l~~g~~fGe~~ll~~~~~~~tv~a~~-~~~l~~l~~~~~~~~l~~~~~~ 295 (602)
+..+.+|++||+.+++.+.+++++++|.+ .|+++.+++++|.+++..+|..
T Consensus 95 l~~l~~Gd~fGe~al~~~~~~~~tv~A~edd~~ll~I~~~~f~~ll~~~p~l 146 (694)
T 3cf6_E 95 VCTLHEGDDFGKLALVNDAPRAASIVLREDNCHFLRVDKEDFNRILRDVEAN 146 (694)
T ss_dssp EEEEETTCEECHHHHHHTCBCSSEEEECSSSEEEEEEEHHHHHHHTTTTCCC
T ss_pred EEEeCCCCEeehHHHhCCCCceEEEEEeeCceEEEEEeHHHHHHHHHHCHHH
Confidence 89999999999999999999999999999 5999999999999999998865
No 172
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=99.27 E-value=3.8e-11 Score=94.95 Aligned_cols=56 Identities=38% Similarity=0.633 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHhhcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038432 56 RYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVE 111 (602)
Q Consensus 56 ~Y~~s~ywa~~t~~tvGygd~~~~~~~e~~~~~~~~~~g~~~~~~~i~~i~~~~~~ 111 (602)
.|.+|+||+++|+||+||||+.|.+..+++++++.+++|..+++++++.+...++.
T Consensus 32 ~~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~~ 87 (97)
T 3ouf_A 32 RPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQL 87 (97)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred CHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 47899999999999999999999999999999999999999999999999876654
No 173
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=99.25 E-value=4.6e-11 Score=91.30 Aligned_cols=54 Identities=24% Similarity=0.592 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHhhcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038432 56 RYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLV 109 (602)
Q Consensus 56 ~Y~~s~ywa~~t~~tvGygd~~~~~~~e~~~~~~~~~~g~~~~~~~i~~i~~~~ 109 (602)
.|.+|+||+++|+||+||||+.|.|..+++++++.+++|..++++.++.+.+.+
T Consensus 28 ~~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 28 SWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999999999998764
No 174
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.23 E-value=8.2e-11 Score=134.90 Aligned_cols=114 Identities=18% Similarity=0.230 Sum_probs=102.1
Q ss_pred HhhHhhhhhhcccccCCHHHHHHHHHhccce-ecCCCCeEEccCCCCCeEEEEEEeEEEEEEeccCceeEEEEeCCCCee
Q 038432 176 HLFLHTVEKVYLFKDVSKEIIVLLVAKMKAE-YIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMF 254 (602)
Q Consensus 176 ~~~~~~l~~~~~f~~~s~~~l~~l~~~~~~~-~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~f 254 (602)
+...+.+.++|.|.+++...+..|+..+... ++..|++|+++||.++++|||.+|.|+|+.... ..+..+++||+|
T Consensus 333 e~l~e~L~~i~~f~~Ls~~v~r~L~~~l~~~~~~kaGtvI~rQGE~gds~YIIlsG~V~V~~~~~---~~v~~L~~Gd~F 409 (999)
T 4f7z_A 333 EIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGK---GVVCTLHEGDDF 409 (999)
T ss_dssp HHHHHHHTTCGGGTTSCHHHHHHHTTTCEEEEESSTTCEEECTTSBCCEEEEEEESEEEEEETTT---EEEEEEETTCEE
T ss_pred HHHHHHHHhhHHHhcCCHHHHHHHHHhhhhheeccCCCEEEeCCCcCCeEEEEEeeEEEEEEcCC---cceEEecCCCcc
Confidence 4456789999999999999999999999864 567899999999999999999999999986433 568899999999
Q ss_pred ehhhhhcCCCceeEEEEcce-eEEEEeeHHHHHHHHHhC
Q 038432 255 GEVGALCCRPQIYTYRTKTL-SQLLRLKTSALIEAMQSK 292 (602)
Q Consensus 255 Ge~~ll~~~~~~~tv~a~~~-~~l~~l~~~~~~~~l~~~ 292 (602)
|+.+++.+.|+.+++++.++ |+++.+++++|.+++...
T Consensus 410 GElALL~~~PR~aTV~a~~d~c~fl~i~k~df~~il~~~ 448 (999)
T 4f7z_A 410 GKLALVNDAPRAASIVLREDNCHFLRVDKEDGNRILRDV 448 (999)
T ss_dssp CGGGGTCSCBCSSEEEESSSSEEEEEEEHHHHHHHHHHH
T ss_pred cchhhccCCCeeEEEEEecCceEEEEeeHHHHHHHHhHH
Confidence 99999999999999999885 999999999999887643
No 175
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=99.19 E-value=1.5e-11 Score=128.61 Aligned_cols=84 Identities=19% Similarity=0.184 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCCCCchHHHHHHHHHHHHHHHhhcccCccccccchhHHHHHHHHHHH
Q 038432 15 DIILVHCAGCLYYLLADRYPHKGETWLGSVNPNFTETSLWIRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFN 94 (602)
Q Consensus 15 ~l~~~H~~aC~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~Y~~s~ywa~~t~~tvGygd~~~~~~~e~~~~~~~~~~g 94 (602)
+++.++++||++|++... . ..+.+..|..|+||+++||||+||||+.|.+..+++|+++++++|
T Consensus 350 l~i~~~if~~~~~~~e~~---~-------------~~~~F~s~~~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~~~l~G 413 (514)
T 2r9r_B 350 LFIGVILFSSAVYFAEAD---E-------------RDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAG 413 (514)
T ss_dssp HHHHHHHHHHHHHHHHTT---C-------------TTCSCSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhheeecc---C-------------CCccccchhhhhheeeeEEEecccCCCCCCCcchHhhehhHHHHH
Confidence 344566777777755211 1 122334688999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhH
Q 038432 95 LGLTAYLIGNMTNLVVEGTR 114 (602)
Q Consensus 95 ~~~~~~~i~~i~~~~~~~~~ 114 (602)
+++++++++.+.+.+.....
T Consensus 414 ~~~l~l~iavI~~~f~~~~~ 433 (514)
T 2r9r_B 414 VLTIALPVPVIVSNFNYFYH 433 (514)
T ss_dssp HHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999987776654
No 176
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=99.12 E-value=3.5e-10 Score=103.52 Aligned_cols=95 Identities=22% Similarity=0.320 Sum_probs=83.4
Q ss_pred eecCCCCeEEccCCCCCeEEEEEEeEEEEEEec-cCceeEEEEeCCCCeeehhhhhcCCCceeEEEEcceeEEEEeeHHH
Q 038432 206 EYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYE-MEKEIAVGTLQTGDMFGEVGALCCRPQIYTYRTKTLSQLLRLKTSA 284 (602)
Q Consensus 206 ~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~-~~~~~~~~~l~~g~~fGe~~ll~~~~~~~tv~a~~~~~l~~l~~~~ 284 (602)
+.|++|++|+++|++++.+|||.+|.|+++... ++++..+..+.+|++||+ +++.+.+++.++.|.++++++.++++.
T Consensus 2 ~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~Ge-~~~~~~~~~~~~~A~~~~~v~~i~~~~ 80 (195)
T 3b02_A 2 KRFARKETIYLRGEEARTLYRLEEGLVRVVELLPDGRLITLRHVLPGDYFGE-EALEGKAYRYTAEAMTEAVVQGLEPRA 80 (195)
T ss_dssp EEECTTCEEECTTSBCCCEEEEEESCEEEEEECTTSCEEEEEEECTTCEECG-GGGTCSBCSSEEEESSSEEEEEECGGG
T ss_pred eEcCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEecCCCEech-hhhCCCCceeEEEECCcEEEEEEcHHH
Confidence 578999999999999999999999999998754 557888999999999999 999999999999999999999999999
Q ss_pred HHHHHHhChHHHHHHHHHHHHhh
Q 038432 285 LIEAMQSKQEDNVSILKNFLQQH 307 (602)
Q Consensus 285 ~~~~l~~~~~~~~~il~~ll~~~ 307 (602)
|. |+....+++.+..+.
T Consensus 81 ~~------p~~~~~~~~~l~~~l 97 (195)
T 3b02_A 81 MD------HEALHRVARNLARQM 97 (195)
T ss_dssp CC------HHHHHHHHHHHHHHH
T ss_pred cC------HHHHHHHHHHHHHHH
Confidence 97 666666665555443
No 177
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=99.07 E-value=5.3e-12 Score=111.25 Aligned_cols=61 Identities=28% Similarity=0.484 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHhhcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHh
Q 038432 55 IRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRR 115 (602)
Q Consensus 55 ~~Y~~s~ywa~~t~~tvGygd~~~~~~~e~~~~~~~~~~g~~~~~~~i~~i~~~~~~~~~~ 115 (602)
..|..|+||+++|+|||||||+.|.|..+++++++++++|+++++++++.+...+.+....
T Consensus 66 ~~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~~ 126 (166)
T 3pjs_K 66 ITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGQEQQ 126 (166)
T ss_dssp CSTTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSSSHHH
T ss_pred CCHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578899999999999999999999999999999999999999999999999887765443
No 178
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=99.01 E-value=8.3e-10 Score=106.40 Aligned_cols=57 Identities=19% Similarity=0.307 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHhhcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038432 55 IRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVE 111 (602)
Q Consensus 55 ~~Y~~s~ywa~~t~~tvGygd~~~~~~~e~~~~~~~~~~g~~~~~~~i~~i~~~~~~ 111 (602)
..|..|+||+++|+||+||||+.|.+..+++++++.+++|++++++++|.+...+..
T Consensus 81 ~s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~~ 137 (301)
T 1xl4_A 81 GSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTR 137 (301)
T ss_dssp TCHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 458899999999999999999999999999999999999999999999998876644
No 179
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=98.99 E-value=1.2e-09 Score=100.49 Aligned_cols=100 Identities=17% Similarity=0.218 Sum_probs=82.3
Q ss_pred HHHhccceecCCCCeEEccCCCC--CeEEEEEEeEEEEEEec-cCceeEEEEeCCCCeeehhhhhcCCCceeEEEEccee
Q 038432 199 LVAKMKAEYIPPREDVIMQNEAP--DDVYIIVSGEVEMIDYE-MEKEIAVGTLQTGDMFGEVGALCCRPQIYTYRTKTLS 275 (602)
Q Consensus 199 l~~~~~~~~~~~g~~i~~~g~~~--~~ly~I~~G~v~i~~~~-~~~~~~~~~l~~g~~fGe~~ll~~~~~~~tv~a~~~~ 275 (602)
|...++.+.|++|++|+.+|+++ +.+|||.+|.|+++... ++++..+..+.+|++||+ +++.+.+++.++.|.+++
T Consensus 1 l~~~~~~~~~~~g~~i~~~g~~~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~-~~l~~~~~~~~~~A~~~~ 79 (202)
T 2zcw_A 1 MTQVRETVSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEAVDEEGNALTLRLVRPGGFFGE-EALFGQERIYFAEAATDV 79 (202)
T ss_dssp -----CCEEECTTCEEECSBSCCTTCCCEEEEESCEEEEEECTTSCEEEEEEECTTCEECT-HHHHTCCBCSEEEESSCE
T ss_pred CCccceEEEECCCCEEECCCCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCCEeee-hhcCCCCcceEEEEcccE
Confidence 34667889999999999999999 99999999999998654 567888999999999999 888899999999999999
Q ss_pred EEEEeeHHHHHHHHHhChHHHHHHHHHHHHh
Q 038432 276 QLLRLKTSALIEAMQSKQEDNVSILKNFLQQ 306 (602)
Q Consensus 276 ~l~~l~~~~~~~~l~~~~~~~~~il~~ll~~ 306 (602)
.++.+ .+.|. |+....+++.+..+
T Consensus 80 ~v~~i-~~~~~------p~~~~~~~~~l~~~ 103 (202)
T 2zcw_A 80 RLEPL-PENPD------PELLKDLAQHLSQG 103 (202)
T ss_dssp EEEEC-CSSCC------HHHHHHHHHHHHHH
T ss_pred EEEEE-hHhcC------HHHHHHHHHHHHHH
Confidence 99999 88775 66555555554443
No 180
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=98.95 E-value=1.9e-09 Score=104.70 Aligned_cols=58 Identities=21% Similarity=0.358 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHhhcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 038432 56 RYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGT 113 (602)
Q Consensus 56 ~Y~~s~ywa~~t~~tvGygd~~~~~~~e~~~~~~~~~~g~~~~~~~i~~i~~~~~~~~ 113 (602)
.|..|+||+++|+|||||||+.|.+..+++++++.+++|++++++++|.+...+....
T Consensus 78 s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~~~ 135 (321)
T 2qks_A 78 GFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQPK 135 (321)
T ss_dssp THHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred chhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5889999999999999999999999999999999999999999999999998776654
No 181
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.91 E-value=3.4e-09 Score=101.40 Aligned_cols=57 Identities=28% Similarity=0.473 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHhhcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038432 56 RYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEG 112 (602)
Q Consensus 56 ~Y~~s~ywa~~t~~tvGygd~~~~~~~e~~~~~~~~~~g~~~~~~~i~~i~~~~~~~ 112 (602)
.|..|+||+++|+|||||||+.|.|..+++|+++.+++|+.+++++++.+.+.+...
T Consensus 115 ~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~~~ 171 (309)
T 3um7_A 115 DLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGSS 171 (309)
T ss_dssp SHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 699999999999999999999999999999999999999999999999999887654
No 182
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=98.89 E-value=1.2e-09 Score=106.28 Aligned_cols=58 Identities=21% Similarity=0.398 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHhhcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 038432 56 RYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGT 113 (602)
Q Consensus 56 ~Y~~s~ywa~~t~~tvGygd~~~~~~~e~~~~~~~~~~g~~~~~~~i~~i~~~~~~~~ 113 (602)
.|..|+||+++|+||+||||+.|.+..+++++++.+++|++++++++|.+...+....
T Consensus 96 s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~~~ 153 (333)
T 1p7b_A 96 GFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARPR 153 (333)
T ss_dssp STHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred cHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999998876654
No 183
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=98.79 E-value=1.4e-08 Score=108.80 Aligned_cols=80 Identities=16% Similarity=0.436 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCccccccCCCCCCCchHHHHHHHHHHHHHHHhhcccCccccccchhHHHHHHHHHHH
Q 038432 15 DIILVHCAGCLYYLLADRYPHKGETWLGSVNPNFTETSLWIRYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFN 94 (602)
Q Consensus 15 ~l~~~H~~aC~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~Y~~s~ywa~~t~~tvGygd~~~~~~~e~~~~~~~~~~g 94 (602)
+++++++.+|+|+++..... +..| .|+.|+||+++|+||+||||+.|.|..+++|+++++++|
T Consensus 27 ~~~~~~~~~~~~~~~~~~~e--~~~~---------------~~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g 89 (565)
T 4gx0_A 27 LLVMLLAYASIFRYLMWHLE--GRAY---------------SFMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSG 89 (565)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--CCCC---------------CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhc--CCCC---------------chhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHH
Confidence 66667777888777653211 1112 367999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHHHHHh
Q 038432 95 LGLTAYLIGN-MTNLVVE 111 (602)
Q Consensus 95 ~~~~~~~i~~-i~~~~~~ 111 (602)
++++++.++. +..++..
T Consensus 90 ~~~~~~~~~~~~~~~~~~ 107 (565)
T 4gx0_A 90 VIFLDIILPFGFVSMFLA 107 (565)
T ss_dssp HHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 9999999998 5555443
No 184
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.68 E-value=3.1e-08 Score=94.79 Aligned_cols=58 Identities=28% Similarity=0.456 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHhhcccCccccccchhH------HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 038432 56 RYISAMYWSITTMTTVGYGDLHAVNTVEM------IFIIFYMLFNLGLTAYLIGNMTNLVVEGT 113 (602)
Q Consensus 56 ~Y~~s~ywa~~t~~tvGygd~~~~~~~e~------~~~~~~~~~g~~~~~~~i~~i~~~~~~~~ 113 (602)
.|++|+||+++|+|||||||+.|.+..++ +++++++++|+.+++++++.+.+.+....
T Consensus 224 ~~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~~~~ 287 (309)
T 3um7_A 224 SKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLRVVS 287 (309)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred CHHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999998886 59999999999999999999888776554
No 185
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=98.66 E-value=1.3e-07 Score=91.74 Aligned_cols=93 Identities=22% Similarity=0.364 Sum_probs=68.4
Q ss_pred HHHHHHH--HHHHHHHHhhcCCC----CCCccccccCCCCCCCchHHHHHHHHHHHHHHHhhcccCccccc--cchhHHH
Q 038432 15 DIILVHC--AGCLYYLLADRYPH----KGETWLGSVNPNFTETSLWIRYISAMYWSITTMTTVGYGDLHAV--NTVEMIF 86 (602)
Q Consensus 15 ~l~~~H~--~aC~~~~~~~~~~~----~~~~w~~~~~~~~~~~~~~~~Y~~s~ywa~~t~~tvGygd~~~~--~~~e~~~ 86 (602)
+.+++.| +|++||+++...++ .+..|.+-. .....+..++||++.|+||+||||+.|. +...+++
T Consensus 51 ~~y~~swl~Fa~ly~~ia~~~Gdl~~~~~~~~~~Cv-------~~~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l 123 (340)
T 3sya_A 51 MVYTVTWLFFGMIWWLIAYIRGDMDHIEDPSWTPCV-------TNLNGFVSAFLFSIETETTIGYGYRVITDKCPEGIIL 123 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTTCSSCSSCCCSB-------SCCCSTTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccccccccccchh-------ccccCHHHHHhhhheeeeeecCCCccCcCcCHHHHHH
Confidence 4455555 68899988743222 122333211 0123467899999999999999999996 6789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 038432 87 IIFYMLFNLGLTAYLIGNMTNLVVEGTR 114 (602)
Q Consensus 87 ~~~~~~~g~~~~~~~i~~i~~~~~~~~~ 114 (602)
+.+.+++|+++.|+++|.+..-+....+
T Consensus 124 ~~~~~l~G~~l~a~~~giv~ak~srp~~ 151 (340)
T 3sya_A 124 LLIQSVLGSIVNAFMVGCMFVKISQPKK 151 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhh
Confidence 9999999999999999999887766543
No 186
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.62 E-value=5.5e-08 Score=91.60 Aligned_cols=56 Identities=20% Similarity=0.438 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHhhcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038432 56 RYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVE 111 (602)
Q Consensus 56 ~Y~~s~ywa~~t~~tvGygd~~~~~~~e~~~~~~~~~~g~~~~~~~i~~i~~~~~~ 111 (602)
.|..|+||+++|+||+||||+.|.|..+++|+++.+++|+.+++++++.+...+..
T Consensus 93 ~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~~ 148 (280)
T 3ukm_A 93 DFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRITV 148 (280)
T ss_dssp SHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999998865543
No 187
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.59 E-value=4.6e-08 Score=92.12 Aligned_cols=58 Identities=19% Similarity=0.336 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHhhcccCccccccch-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 038432 56 RYISAMYWSITTMTTVGYGDLHAVNTV-------EMIFIIFYMLFNLGLTAYLIGNMTNLVVEGT 113 (602)
Q Consensus 56 ~Y~~s~ywa~~t~~tvGygd~~~~~~~-------e~~~~~~~~~~g~~~~~~~i~~i~~~~~~~~ 113 (602)
.|++|+||+++|+|||||||+.|.+.. .++++++++++|..+++++++.+.++.....
T Consensus 201 s~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~~~~ 265 (280)
T 3ukm_A 201 NFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHELKK 265 (280)
T ss_dssp CHHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHH
T ss_pred chhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378999999999999999999999885 4999999999999999999999987665543
No 188
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=98.52 E-value=3.7e-07 Score=88.58 Aligned_cols=92 Identities=20% Similarity=0.309 Sum_probs=67.2
Q ss_pred HHHHHHH--HHHHHHHHhhcCCC-----CCCccccccCCCCCCCchHHHHHHHHHHHHHHHhhcccCcccc--ccchhHH
Q 038432 15 DIILVHC--AGCLYYLLADRYPH-----KGETWLGSVNPNFTETSLWIRYISAMYWSITTMTTVGYGDLHA--VNTVEMI 85 (602)
Q Consensus 15 ~l~~~H~--~aC~~~~~~~~~~~-----~~~~w~~~~~~~~~~~~~~~~Y~~s~ywa~~t~~tvGygd~~~--~~~~e~~ 85 (602)
+.+++.| +|.+||+++...++ .++.|.+-. .....+..++||++.|+||+||||+.| .+...++
T Consensus 53 ~~y~~swl~Fally~~ia~~~gdl~~~~~~~~~~~Cv-------~~~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~ 125 (343)
T 3spc_A 53 LAFLVSWLLFGLIFWLIALIHGDLENPGGDDTFKPCV-------LQVNGFVAAFLFSIETQTTIGYGFRCVTEECPLAVF 125 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTGGGCTTCCSSCCCSE-------ETCCSHHHHHHHHHHHHSCCCCSSSEECSSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCccccccccccccccc-------cccCCHHHHhheeeeeeEeecCCCccCCCCCHHHHH
Confidence 4444455 57888877644221 122343210 112468899999999999999999986 4888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 038432 86 FIIFYMLFNLGLTAYLIGNMTNLVVEGT 113 (602)
Q Consensus 86 ~~~~~~~~g~~~~~~~i~~i~~~~~~~~ 113 (602)
++.+.+++|+++.|+++|.+..-+....
T Consensus 126 l~~~~~l~G~~l~a~~~giv~ak~srp~ 153 (343)
T 3spc_A 126 MVVVQSIVGCIIDSFMIGAIMAKMARPK 153 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 9999999999999999999987666544
No 189
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=98.33 E-value=3.5e-08 Score=98.35 Aligned_cols=57 Identities=23% Similarity=0.609 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHhhcccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038432 56 RYISAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEG 112 (602)
Q Consensus 56 ~Y~~s~ywa~~t~~tvGygd~~~~~~~e~~~~~~~~~~g~~~~~~~i~~i~~~~~~~ 112 (602)
.|..|+||+++|+||+||||+.|.|..+++|+++++++|+.+++++++.+...+...
T Consensus 45 ~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (336)
T 1lnq_A 45 SWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINR 101 (336)
T ss_dssp CSSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC---
T ss_pred CHHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355799999999999999999999999999999999999999999999998766553
No 190
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=98.09 E-value=3.4e-06 Score=81.64 Aligned_cols=61 Identities=11% Similarity=0.163 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHHHHHHhhcccC-ccc-cccchh----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 038432 53 LWIRYISAMYWSITTMTTVGYG-DLH-AVNTVE----MIFIIFYMLFNLGLTAYLIGNMTNLVVEGT 113 (602)
Q Consensus 53 ~~~~Y~~s~ywa~~t~~tvGyg-d~~-~~~~~e----~~~~~~~~~~g~~~~~~~i~~i~~~~~~~~ 113 (602)
.+..+..|+||++.++||+||| |+. |.+... ..|..++++.|+++.+.+++.+.+-+....
T Consensus 177 ~F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~~ 243 (285)
T 3rvy_A 177 WFGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAILN 243 (285)
T ss_dssp HHSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred ccCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677899999999999999999 985 766544 788899999999999999999988766544
No 191
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=93.53 E-value=0.24 Score=45.44 Aligned_cols=58 Identities=10% Similarity=0.230 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHHHHHHhhcccCcccc----ccchh-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038432 53 LWIRYISAMYWSITTMTTVGYGDLHA----VNTVE-MIFIIFYMLFNLGLTAYLIGNMTNLVV 110 (602)
Q Consensus 53 ~~~~Y~~s~ywa~~t~~tvGygd~~~----~~~~e-~~~~~~~~~~g~~~~~~~i~~i~~~~~ 110 (602)
.+.....|++|...++|+.||+|+.. .+... ..|..++.+.+.++...+++.+.+-+.
T Consensus 162 ~F~~~~~a~~~lf~~~t~~~w~~i~~~~~~~~~~~~~~f~~~~~i~~~i~lNlfiavi~~~f~ 224 (229)
T 4dxw_A 162 RWGDLGISLITLFQVLTLSSWETVMLPMQEIYWWSWVYFFSFIIICSITILNLVIAILVDVVI 224 (229)
T ss_dssp TTSSHHHHHHHHHHHHTTSSTHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHccCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678899999999999999998621 11222 334445555666667777777665444
No 192
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=85.14 E-value=0.8 Score=50.94 Aligned_cols=98 Identities=11% Similarity=0.222 Sum_probs=59.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCC-----CCCCchHHHHHHHHHHHHHHHhhcccCccccccchhH
Q 038432 10 DVRFCDIILVHCAGCLYYLLADRYPHKGETWLGSVNPN-----FTETSLWIRYISAMYWSITTMTTVGYGDLHAVNTVEM 84 (602)
Q Consensus 10 ~i~~~~l~~~H~~aC~~~~~~~~~~~~~~~w~~~~~~~-----~~~~~~~~~Y~~s~ywa~~t~~tvGygd~~~~~~~e~ 84 (602)
.+++.+++++..++++++++.... +..|......+ ............++||++.+++..| ++..|.+...|
T Consensus 515 ~vW~~i~~~~~~~~~~l~~~~~~~---p~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~~~p~~~~~R 590 (823)
T 3kg2_A 515 EIWMCIVFAYIGVSVVLFLVSRFS---PYEWHTEEFEDGRETQSSESTNEFGIFNSLWFSLGAFMQQG-ADISPRSLSGR 590 (823)
T ss_dssp HHHHHHHHHHHHHHTTGGGTC--------------------------CHHHHHHHHHHHTTTTSCC-------CCCHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcC---hhhccCcccccccccccccccccccHHHHHHHHHHHHHhcC-CCcCCcchhhh
Confidence 345556666666666666554432 23444221100 0111223456789999999998888 78899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038432 85 IFIIFYMLFNLGLTAYLIGNMTNLVVE 111 (602)
Q Consensus 85 ~~~~~~~~~g~~~~~~~i~~i~~~~~~ 111 (602)
++.+++++++.++.+...+++..++..
T Consensus 591 ~~~~~w~~~~lil~~~Yta~L~s~Lt~ 617 (823)
T 3kg2_A 591 IVGGVWWFFTLIIISSYTANLAAFLTV 617 (823)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999998875
No 193
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=64.33 E-value=15 Score=37.85 Aligned_cols=147 Identities=9% Similarity=-0.027 Sum_probs=86.3
Q ss_pred hhHhhhcCcHHHHHH----HHhcCCCCCCCCCCCchHHHHHHhcC-C-------------hHHHHHHHhcccCCCchhhH
Q 038432 335 LLTVASTGNAAFLDE----LLKARLDPDIGDSKGRTPLHIAASKG-H-------------EECVLVLLKHASNVHLRDYI 396 (602)
Q Consensus 335 L~~A~~~g~~~~~~~----Ll~~g~~~n~~d~~g~t~Lh~A~~~g-~-------------~~~v~~Ll~~g~~~~~~~~~ 396 (602)
|...++.|+.+-+.. +.+.|..+|.. -.+.|..||..+ . .++.+.+.+.|..+|...
T Consensus 33 id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~---tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t-- 107 (501)
T 4g26_A 33 LDMCSKKGDVLEALRLYDEARRNGVQLSQY---HYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT-- 107 (501)
T ss_dssp HHHTTTSCCHHHHHHHHHHHHHHTCCCCHH---HHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH--
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHh---HHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH--
Confidence 455567788754444 44567766543 345555555432 1 235555566788887654
Q ss_pred HHHhccchhHHHHhhccCCcHHHHHHHcCChhHHHH----HHhcCCCCCCCCcchhHHHHHhcCCHHHH----HHHHHcC
Q 038432 397 IFMYNLSYDIIILLDMNGNTALWEAISSKHHSIFRI----LYHCTAISDPYTAGDLLCTAEKRNDMSVM----EELVKYG 468 (602)
Q Consensus 397 ~~~~~~~~~~~~~~~~~g~tpLh~A~~~~~~~~~~~----Ll~~g~~~~~~~g~t~L~~A~~~~~~~~~----~~Ll~~g 468 (602)
-.+.+...+..|+.+-+.- +.+.|..++...-.+.+...++.|+.+-+ +.+.+.|
T Consensus 108 -----------------yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G 170 (501)
T 4g26_A 108 -----------------FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESE 170 (501)
T ss_dssp -----------------HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred -----------------HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 1244555677787765444 44667777766666778888888886544 4455678
Q ss_pred CCCCCCCCCCcCHHHHHHHcCcHHHHHHHH----HCCCCcc
Q 038432 469 LNVDSKDRHGRTAIEIAMAENNVEMVNFLV----MNGSDVV 505 (602)
Q Consensus 469 a~~n~~d~~g~TpLh~A~~~~~~~iv~~Ll----~~ga~~~ 505 (602)
..+|.... .+-+...+..|+.+-+.-++ +.|..|+
T Consensus 171 ~~Pd~~ty--~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps 209 (501)
T 4g26_A 171 VVPEEPEL--AALLKVSMDTKNADKVYKTLQRLRDLVRQVS 209 (501)
T ss_dssp CCCCHHHH--HHHHHHHHHTTCHHHHHHHHHHHHHHTSSBC
T ss_pred CCCCHHHH--HHHHHHHhhCCCHHHHHHHHHHHHHhCCCcC
Confidence 77764321 24455566778775444443 3455554
No 194
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=52.87 E-value=51 Score=25.65 Aligned_cols=65 Identities=20% Similarity=0.111 Sum_probs=42.6
Q ss_pred cceecCCCCeEEccCCCCCeEEEEEEeEEEEEEeccCceeEEEEeCCCCeeehhhhhcCCCceeEEEEcceeEEE
Q 038432 204 KAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFGEVGALCCRPQIYTYRTKTLSQLL 278 (602)
Q Consensus 204 ~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~fGe~~ll~~~~~~~tv~a~~~~~l~ 278 (602)
....+++|..+-..--....+++|++|++++...+. ...+++||.+-.. ......+++.+.+.++
T Consensus 39 ~~~~l~~G~~~~~H~H~~~e~~~Vl~G~~~~~i~~~-----~~~l~~Gd~i~ip-----~~~~H~~~~~~~~~~~ 103 (114)
T 3fjs_A 39 MRMVLPAGKQVGSHSVAGPSTIQCLEGEVEIGVDGA-----QRRLHQGDLLYLG-----AGAAHDVNAITNTSLL 103 (114)
T ss_dssp EEEEECTTCEEEEECCSSCEEEEEEESCEEEEETTE-----EEEECTTEEEEEC-----TTCCEEEEESSSEEEE
T ss_pred EEEEECCCCccCceeCCCcEEEEEEECEEEEEECCE-----EEEECCCCEEEEC-----CCCcEEEEeCCCcEEE
Confidence 345678888776655566789999999999876322 3578899876432 2233455666655543
No 195
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=52.22 E-value=27 Score=27.73 Aligned_cols=45 Identities=20% Similarity=0.237 Sum_probs=32.4
Q ss_pred eecCCCCeEEccCCCCCeEEEEEEeEEEEEEeccCceeEEEEeCCCCeeeh
Q 038432 206 EYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFGE 256 (602)
Q Consensus 206 ~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~fGe 256 (602)
..+.||..+-..- ..+++++|++|++.+... + + ...+++||.+-.
T Consensus 45 ~~~~pG~~~~~H~-~~~E~~~Vl~G~~~~~~~-g-~---~~~l~~GD~v~i 89 (119)
T 3lwc_A 45 GRYAPGQSLTETM-AVDDVMIVLEGRLSVSTD-G-E---TVTAGPGEIVYM 89 (119)
T ss_dssp EEECTTCEEEEEC-SSEEEEEEEEEEEEEEET-T-E---EEEECTTCEEEE
T ss_pred EEECCCCCcCccC-CCCEEEEEEeCEEEEEEC-C-E---EEEECCCCEEEE
Confidence 4567887665443 677899999999999762 2 2 347899997743
No 196
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=48.43 E-value=26 Score=27.18 Aligned_cols=44 Identities=20% Similarity=0.202 Sum_probs=29.7
Q ss_pred ecCCCCeEEccCCCCCeEEEEEEeEEEEEEeccCceeEEEEeCCCCeee
Q 038432 207 YIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFG 255 (602)
Q Consensus 207 ~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~fG 255 (602)
.+.+|..+-...-....+++|++|++.+...+ ....+++||.+-
T Consensus 44 ~~~~g~~~~~H~h~~~e~~~vl~G~~~~~i~~-----~~~~l~~Gd~i~ 87 (114)
T 2ozj_A 44 SFADGESVSEEEYFGDTLYLILQGEAVITFDD-----QKIDLVPEDVLM 87 (114)
T ss_dssp EEETTSSCCCBCCSSCEEEEEEEEEEEEEETT-----EEEEECTTCEEE
T ss_pred EECCCCccccEECCCCeEEEEEeCEEEEEECC-----EEEEecCCCEEE
Confidence 35566654434445678999999999987532 134789999763
No 197
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=46.24 E-value=69 Score=28.63 Aligned_cols=68 Identities=13% Similarity=0.217 Sum_probs=49.2
Q ss_pred ccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEeccCceeEEEEeCCCCeeehhhhhcCCCceeEEEEcceeEEEEe
Q 038432 203 MKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFGEVGALCCRPQIYTYRTKTLSQLLRL 280 (602)
Q Consensus 203 ~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~fGe~~ll~~~~~~~tv~a~~~~~l~~l 280 (602)
+....+.+|+.+-..--+.+.+++|++|++++...+. ...+++||++--. ...+..+++.+.+.++.+
T Consensus 39 ~~~~~~~~G~~~~~h~h~~~~~~~Vl~G~~~~~i~~~-----~~~l~~Gd~~~~p-----~~~~H~~~a~~~~~~l~i 106 (227)
T 3rns_A 39 ISLFSLAKDEEITAEAMLGNRYYYCFNGNGEIFIENN-----KKTISNGDFLEIT-----ANHNYSIEARDNLKLIEI 106 (227)
T ss_dssp EEEEEECTTCEEEECSCSSCEEEEEEESEEEEEESSC-----EEEEETTEEEEEC-----SSCCEEEEESSSEEEEEE
T ss_pred EEEEEECCCCccCccccCCCEEEEEEeCEEEEEECCE-----EEEECCCCEEEEC-----CCCCEEEEECCCcEEEEE
Confidence 3456689999988777788899999999999986432 2467888865322 233467778888887766
No 198
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*
Probab=43.12 E-value=41 Score=28.61 Aligned_cols=36 Identities=14% Similarity=0.230 Sum_probs=26.5
Q ss_pred CCCeEEEEEEeEEEEEEeccCceeEEEEeCCCCeeeh
Q 038432 220 APDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFGE 256 (602)
Q Consensus 220 ~~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~fGe 256 (602)
+.+++|++++|.+.+...++++ ..--.+++||+|=-
T Consensus 54 ~~dE~FyvlkG~m~i~v~d~g~-~~~v~l~eGE~f~l 89 (174)
T 1yfu_A 54 PLEEFFYQLRGNAYLNLWVDGR-RERADLKEGDIFLL 89 (174)
T ss_dssp SSCEEEEEEESCEEEEEEETTE-EEEEEECTTCEEEE
T ss_pred CCceEEEEEeeEEEEEEEcCCc-eeeEEECCCCEEEe
Confidence 4678999999999987655432 33457899998843
No 199
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=41.06 E-value=46 Score=25.64 Aligned_cols=66 Identities=12% Similarity=0.013 Sum_probs=39.9
Q ss_pred cceecCCCCeEEccCCCCCeEEEEEEeEEEEEEeccCceeEEEEeCCCCeeehhhhhcCCCceeEEEEcceeEEEE
Q 038432 204 KAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFGEVGALCCRPQIYTYRTKTLSQLLR 279 (602)
Q Consensus 204 ~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~fGe~~ll~~~~~~~tv~a~~~~~l~~ 279 (602)
....+.||..+-..--....+++|++|.+.+...+. ...+++|+.+-.. ......+.+.+.++++.
T Consensus 43 ~~~~~~~g~~~~~H~H~~~e~~~vl~G~~~~~~~~~-----~~~l~~Gd~~~ip-----~~~~H~~~~~~~~~~~~ 108 (115)
T 1yhf_A 43 TVFSLDKGQEIGRHSSPGDAMVTILSGLAEITIDQE-----TYRVAEGQTIVMP-----AGIPHALYAVEAFQMLL 108 (115)
T ss_dssp EEEEECTTCEEEEECCSSEEEEEEEESEEEEEETTE-----EEEEETTCEEEEC-----TTSCEEEEESSCEEEEE
T ss_pred EEEEECCCCccCCEECCCcEEEEEEeCEEEEEECCE-----EEEECCCCEEEEC-----CCCCEEEEECCCceEEE
Confidence 345677887665443345689999999999875321 2468899876322 12233445555555443
No 200
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=40.95 E-value=1.1e+02 Score=23.42 Aligned_cols=67 Identities=15% Similarity=0.054 Sum_probs=40.3
Q ss_pred cceecCCCCeEEccCCCCCeEEEEEEeEEEEEEeccCceeEEEEeCCCCeeehhhhhcCCCceeEEEEcceeEEEEe
Q 038432 204 KAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFGEVGALCCRPQIYTYRTKTLSQLLRL 280 (602)
Q Consensus 204 ~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~fGe~~ll~~~~~~~tv~a~~~~~l~~l 280 (602)
....+.||..+-..--....+++|++|.+.+...+ ....+.+||.+-.. ......+.+.+.+.++.+
T Consensus 37 ~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~~~-----~~~~l~~Gd~~~ip-----~~~~H~~~~~~~~~~l~v 103 (116)
T 2pfw_A 37 VKIWFDKGAEGYVHAHRHSQVSYVVEGEFHVNVDG-----VIKVLTAGDSFFVP-----PHVDHGAVCPTGGILIDT 103 (116)
T ss_dssp EEEEECTTEEEEEECCSSEEEEEEEEECEEEEETT-----EEEEECTTCEEEEC-----TTCCEEEEESSCEEEEEE
T ss_pred EEEEECCCCcCCcEECCcceEEEEEeeEEEEEECC-----EEEEeCCCCEEEEC-----cCCceeeEeCCCcEEEEE
Confidence 34556788765433334567999999999987622 13568999876322 122344555555555544
No 201
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20
Probab=39.29 E-value=40 Score=28.66 Aligned_cols=37 Identities=8% Similarity=0.104 Sum_probs=26.4
Q ss_pred CCCCeEEEEEEeEEEEEEeccC---ceeEEEEeCCCCeee
Q 038432 219 EAPDDVYIIVSGEVEMIDYEME---KEIAVGTLQTGDMFG 255 (602)
Q Consensus 219 ~~~~~ly~I~~G~v~i~~~~~~---~~~~~~~l~~g~~fG 255 (602)
++.+++|++++|.+.+...+++ +...--.+++||+|=
T Consensus 52 ~~~eE~Fy~lkG~m~l~v~d~g~~~~~~~dv~i~eGdmfl 91 (176)
T 1zvf_A 52 NPTPEWFYQKKGSMLLKVVDETDAEPKFIDIIINEGDSYL 91 (176)
T ss_dssp CSSCEEEEEEESCEEEEEEECSSSSCEEEEEEECTTEEEE
T ss_pred CCCceEEEEEeCEEEEEEEcCCCcccceeeEEECCCCEEE
Confidence 3456899999999988765533 123345789999884
No 202
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=38.44 E-value=56 Score=24.89 Aligned_cols=45 Identities=18% Similarity=0.121 Sum_probs=31.0
Q ss_pred ceecCCCCeEEccCCCCCeEEEEEEeEEEEEEeccCceeEEEEeCCCCeee
Q 038432 205 AEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFG 255 (602)
Q Consensus 205 ~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~fG 255 (602)
...+.||..-.. -...++++|++|++.+...++ . ...+++||.+-
T Consensus 35 ~~~~~pg~~~~h--H~~~E~~~Vl~G~~~~~i~~g-~---~~~l~~GD~i~ 79 (101)
T 1o5u_A 35 IWEKEVSEFDWY--YDTNETCYILEGKVEVTTEDG-K---KYVIEKGDLVT 79 (101)
T ss_dssp EEEECSEEEEEE--CSSCEEEEEEEEEEEEEETTC-C---EEEEETTCEEE
T ss_pred EEEeCCCccccc--CCceEEEEEEeCEEEEEECCC-C---EEEECCCCEEE
Confidence 445677765443 346789999999999976322 1 34689999764
No 203
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A
Probab=38.42 E-value=33 Score=29.42 Aligned_cols=53 Identities=11% Similarity=0.157 Sum_probs=35.8
Q ss_pred ccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEeccCceeEEEEeCCCCeeeh
Q 038432 203 MKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFGE 256 (602)
Q Consensus 203 ~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~fGe 256 (602)
+....+.||......-..++++++|++|++.+.....+. .....+++||.+-.
T Consensus 43 ~~~~~l~pg~~~~pHh~~a~E~~yVl~G~~~v~v~~~~~-~~~~~l~~GDv~~~ 95 (178)
T 1dgw_A 43 VLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDG-RDTYKLDQGDAIKI 95 (178)
T ss_dssp EEEEEECTTEEEEEEEESSEEEEEEEESEEEEEEEETTE-EEEEEEETTEEEEE
T ss_pred EEEEEecCCcEecCcCCCCCEEEEEEeEEEEEEEEeCCC-cEEEEECCCCEEEE
Confidence 345567888776554444578999999998886543322 23558999997743
No 204
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=37.65 E-value=47 Score=25.28 Aligned_cols=46 Identities=22% Similarity=0.239 Sum_probs=31.4
Q ss_pred ceecCCCCeEEcc--CCC-CCeEEEEEEeEEEEEEeccCceeEEEEeCCCCeee
Q 038432 205 AEYIPPREDVIMQ--NEA-PDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFG 255 (602)
Q Consensus 205 ~~~~~~g~~i~~~--g~~-~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~fG 255 (602)
...+.||..+-.. --. ...+++|++|++.+...+ ....+++||.+-
T Consensus 25 ~~~~~pg~~~~~h~~~H~~~~e~~~vl~G~~~~~~~~-----~~~~l~~Gd~~~ 73 (113)
T 2gu9_A 25 EMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIVDG-----HTQALQAGSLIA 73 (113)
T ss_dssp EEEECTTCEEECCCSSSCCCEEEEEEEECCEEEEETT-----EEEEECTTEEEE
T ss_pred EEEECCCCccCCcccccCCCcEEEEEEeCEEEEEECC-----EEEEeCCCCEEE
Confidence 3557888766543 223 568999999999987632 134688888763
No 205
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=36.54 E-value=58 Score=24.19 Aligned_cols=46 Identities=22% Similarity=0.156 Sum_probs=31.1
Q ss_pred ceecCCCCeEEccCCC-CCeEEEEEEeEEEEEEeccCceeEEEEeCCCCeee
Q 038432 205 AEYIPPREDVIMQNEA-PDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFG 255 (602)
Q Consensus 205 ~~~~~~g~~i~~~g~~-~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~fG 255 (602)
...+.||..+-..--. ...+++|++|.+.+...+ ....+++||.+-
T Consensus 32 ~~~~~pg~~~~~H~H~~~~e~~~v~~G~~~~~~~~-----~~~~l~~Gd~~~ 78 (105)
T 1v70_A 32 LYALLPGQAQKVHVHEGSDKVYYALEGEVVVRVGE-----EEALLAPGMAAF 78 (105)
T ss_dssp EEEECTTCEEEEECCSSCEEEEEEEESCEEEEETT-----EEEEECTTCEEE
T ss_pred EEEECCCCcCCccCCCCCcEEEEEEeCEEEEEECC-----EEEEeCCCCEEE
Confidence 4557788776443323 356999999999987532 235788998763
No 206
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=35.59 E-value=51 Score=25.91 Aligned_cols=47 Identities=15% Similarity=0.244 Sum_probs=32.8
Q ss_pred cceecCCCCeEEccCCCCCeEEEEEEeEEEEEEeccCceeEEEEeCCCCeee
Q 038432 204 KAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFG 255 (602)
Q Consensus 204 ~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~fG 255 (602)
....+.||..+-..--....+++|++|.+.+...+. ...+++|+.+-
T Consensus 44 ~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~~~~-----~~~l~~Gd~~~ 90 (126)
T 4e2g_A 44 NWVRIEPNTEMPAHEHPHEQAGVMLEGTLELTIGEE-----TRVLRPGMAYT 90 (126)
T ss_dssp EEEEECTTCEEEEECCSSEEEEEEEEECEEEEETTE-----EEEECTTEEEE
T ss_pred EEEEECCCCcCCCccCCCceEEEEEEeEEEEEECCE-----EEEeCCCCEEE
Confidence 345678887765444445789999999999876321 35788888763
No 207
>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A
Probab=35.24 E-value=79 Score=27.61 Aligned_cols=53 Identities=11% Similarity=0.158 Sum_probs=34.8
Q ss_pred ccceecCCCCeEEcc-CCCCCeEEEEEEeEEEEEEeccC---ceeEEEEeCCCCeee
Q 038432 203 MKAEYIPPREDVIMQ-NEAPDDVYIIVSGEVEMIDYEME---KEIAVGTLQTGDMFG 255 (602)
Q Consensus 203 ~~~~~~~~g~~i~~~-g~~~~~ly~I~~G~v~i~~~~~~---~~~~~~~l~~g~~fG 255 (602)
+....+.||...-.. .....++++|++|++++...+.+ .+.....+++||.+-
T Consensus 74 ~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~v~~~~~~~~~~~~~~~~l~~GD~~~ 130 (201)
T 1fi2_A 74 MNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRVVRAGETFV 130 (201)
T ss_dssp EEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECCGGGTTCEEEEEEETTCEEE
T ss_pred EEEEEECCCCCCCCeECCCCCEEEEEEeCEEEEEEEcCCCCCCeEEEEEECCCCEEE
Confidence 334567787765433 33357899999999998654322 333456789999774
No 208
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=33.02 E-value=59 Score=27.75 Aligned_cols=45 Identities=20% Similarity=0.264 Sum_probs=29.0
Q ss_pred eecCCCCeEEccCCCCCeEEEEEEeEEEEEEeccCceeEEEEeCCCCee
Q 038432 206 EYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMF 254 (602)
Q Consensus 206 ~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~f 254 (602)
..++||...-.-.-...++++|++|++++...++ + ...+++||.+
T Consensus 84 v~l~PG~~~~~H~H~~eE~~~VLeGel~l~ld~g-e---~~~L~~GDsi 128 (172)
T 3es1_A 84 VDMLPGKESPMHRTNSIDYGIVLEGEIELELDDG-A---KRTVRQGGII 128 (172)
T ss_dssp EEECTTCBCCCBCCSEEEEEEEEESCEEEECGGG-C---EEEECTTCEE
T ss_pred EEECCCCCCCCeecCceEEEEEEeCEEEEEECCC-e---EEEECCCCEE
Confidence 4466665433222333468899999999975422 1 3478999987
No 209
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=30.68 E-value=69 Score=27.03 Aligned_cols=46 Identities=17% Similarity=0.174 Sum_probs=30.9
Q ss_pred ceecCCCCeEEccCCCCCeEEEEEEeEEEEEEeccCceeEEEEeCCCCeee
Q 038432 205 AEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFG 255 (602)
Q Consensus 205 ~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~fG 255 (602)
...+.||..+-..--....+++|++|++.+...+. ...+++||++-
T Consensus 60 ~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~i~~~-----~~~l~~Gd~i~ 105 (167)
T 3ibm_A 60 YFEVEPGGYTTLERHEHTHVVMVVRGHAEVVLDDR-----VEPLTPLDCVY 105 (167)
T ss_dssp EEEECTTCBCCCBBCSSCEEEEEEESEEEEEETTE-----EEEECTTCEEE
T ss_pred EEEECCCCCCCCccCCCcEEEEEEeCEEEEEECCE-----EEEECCCCEEE
Confidence 34566766554333346789999999999875322 45788998763
No 210
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=30.23 E-value=59 Score=25.54 Aligned_cols=48 Identities=21% Similarity=0.296 Sum_probs=31.0
Q ss_pred ccceecCCCCeEEccCCC-CCeEEEEEEeEEEEEEeccCceeEEEEeCCCCee
Q 038432 203 MKAEYIPPREDVIMQNEA-PDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMF 254 (602)
Q Consensus 203 ~~~~~~~~g~~i~~~g~~-~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~f 254 (602)
+....+.||..+-..--. ...+++|++|++.+...++ + ...+++||++
T Consensus 41 ~~~~~~~pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~~~-~---~~~l~~Gd~~ 89 (125)
T 3h8u_A 41 VVVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQGNG-I---VTHLKAGDIA 89 (125)
T ss_dssp EEEEEECTTCEECCC-CTTCEEEEEEEECEEEEECSTT-C---EEEEETTEEE
T ss_pred EEEEEECCCCcCCcccCCCCeEEEEEEEeEEEEEECCC-e---EEEeCCCCEE
Confidence 334567888776544334 3678999999999865222 1 2467888865
No 211
>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}
Probab=29.55 E-value=68 Score=26.15 Aligned_cols=62 Identities=15% Similarity=0.283 Sum_probs=38.0
Q ss_pred ccCCCCCeEEEEEEeEEEEEEeccC---ceeEEEEeCCCCeeehhhhhcCCCceeEEEEcceeEEEEeeH
Q 038432 216 MQNEAPDDVYIIVSGEVEMIDYEME---KEIAVGTLQTGDMFGEVGALCCRPQIYTYRTKTLSQLLRLKT 282 (602)
Q Consensus 216 ~~g~~~~~ly~I~~G~v~i~~~~~~---~~~~~~~l~~g~~fGe~~ll~~~~~~~tv~a~~~~~l~~l~~ 282 (602)
..-+..|++|+|++|++.+...+.+ .+...-.+++|+++-.. +.-.....+...|.++.+..
T Consensus 45 h~H~~tDE~Fivl~G~l~i~~rd~~~~~~~d~~V~l~~Ge~yvVP-----kGveH~p~a~~e~~vLLiEp 109 (140)
T 3d0j_A 45 EIHHSTDEQFILSAGKAILITAEKENDKFNIELTLMEKGKVYNVP-----AECWFYSITQKDTKMMYVQD 109 (140)
T ss_dssp EEESSCCEEEEEEESCEEEEEEEEETTEEEEEEEECCTTCCEEEC-----TTCEEEEEECTTCEEEEEEE
T ss_pred ccCCCCCeEEEEEecEEEEEEecCcCCCCccceEEecCCCEEEeC-----CCccCcccCCCceEEEEEEe
Confidence 4456678999999999998754321 11234578999887533 11223445556666665543
No 212
>2xp1_A SPT6; transcription, IWS1, histone chaperone, mRNA export; 2.20A {Antonospora locustae}
Probab=29.08 E-value=79 Score=27.13 Aligned_cols=42 Identities=12% Similarity=0.089 Sum_probs=32.0
Q ss_pred hhhhhcccccCCHHHHHHHHHhccceecCCCCeEEccCCCCCeEEEEE
Q 038432 181 TVEKVYLFKDVSKEIIVLLVAKMKAEYIPPREDVIMQNEAPDDVYIIV 228 (602)
Q Consensus 181 ~l~~~~~f~~~s~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~I~ 228 (602)
-+-++|.|++++-....+++.. .+|++|+++...++.+-+..
T Consensus 10 R~I~HP~F~n~s~~qAe~~L~~------~~G~~liRPSsk~~~ltit~ 51 (178)
T 2xp1_A 10 RFYKHPLFKNFNVTESENYLRS------STDDFLIRKGSRHGYCVLVI 51 (178)
T ss_dssp GGGGSTTEECCCHHHHHHHHHH------SSCCEEEEECSSTTEEEEEE
T ss_pred eeccCCCcCCCCHHHHHHHHhc------CCCCEEEeecCCCCcEEEEE
Confidence 3457899999999888777766 25999999988877644433
No 213
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=28.85 E-value=42 Score=25.09 Aligned_cols=49 Identities=16% Similarity=0.172 Sum_probs=30.8
Q ss_pred ceecCCCCeEEccCCCCC-eEEEEEEeEEEEEEeccCceeEEEEeCCCCeeeh
Q 038432 205 AEYIPPREDVIMQNEAPD-DVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFGE 256 (602)
Q Consensus 205 ~~~~~~g~~i~~~g~~~~-~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~fGe 256 (602)
...++||...-..--... .+++|++|.+++...++. ....+.+||.+-.
T Consensus 22 ~~~~~Pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~~g~---~~~~l~~Gd~~~~ 71 (97)
T 2fqp_A 22 EWRFPPGGETGWHRHSMDYVVVPMTTGPLLLETPEGS---VTSQLTRGVSYTR 71 (97)
T ss_dssp EEEECTTCBCCSEECCSCEEEEESSCEEEEEEETTEE---EEEEECTTCCEEE
T ss_pred EEEECCCCCCCCEECCCCcEEEEEeecEEEEEeCCCC---EEEEEcCCCEEEe
Confidence 345677765422222333 599999999998764321 3457899997743
No 214
>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}
Probab=28.03 E-value=45 Score=26.31 Aligned_cols=45 Identities=11% Similarity=0.183 Sum_probs=29.8
Q ss_pred cCCCCeEEccCCCCCeEEEEEEeEEEEEEeccCceeEEEEeCCCCeeehh
Q 038432 208 IPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFGEV 257 (602)
Q Consensus 208 ~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~fGe~ 257 (602)
..||..-... +..+++++|++|.+.+...++ . ...+++||.|-..
T Consensus 49 ~tPG~~~~~~-~~~~E~~~iLeG~~~lt~ddG-~---~~~l~aGD~~~~P 93 (116)
T 3es4_A 49 AEPGIYNYAG-RDLEETFVVVEGEALYSQADA-D---PVKIGPGSIVSIA 93 (116)
T ss_dssp ECSEEEEECC-CSEEEEEEEEECCEEEEETTC-C---CEEECTTEEEEEC
T ss_pred cCCceeECee-CCCcEEEEEEEeEEEEEeCCC-e---EEEECCCCEEEEC
Confidence 4555544433 333589999999999986543 2 3478999987533
No 215
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=27.85 E-value=82 Score=32.19 Aligned_cols=107 Identities=10% Similarity=0.111 Sum_probs=69.2
Q ss_pred HHHHHHHhcCCCCCCCCCCCchHHHHHHhcCChHHHHHHH----hcccCCCchhhHHHHhccchhHHHHhhccCCcHHHH
Q 038432 345 AFLDELLKARLDPDIGDSKGRTPLHIAASKGHEECVLVLL----KHASNVHLRDYIIFMYNLSYDIIILLDMNGNTALWE 420 (602)
Q Consensus 345 ~~~~~Ll~~g~~~n~~d~~g~t~Lh~A~~~g~~~~v~~Ll----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~tpLh~ 420 (602)
++++.+.+.|..+|... -.+.+...+..|+.+-+..++ +.|..+|... -.+.+..
T Consensus 91 ~lf~~M~~~G~~Pd~~t--yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~t-------------------yn~lI~~ 149 (501)
T 4g26_A 91 DIFKQMIVDKVVPNEAT--FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRS-------------------YGPALFG 149 (501)
T ss_dssp HHHHHHHHTTCCCCHHH--HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH-------------------HHHHHHH
T ss_pred HHHHHHHHhCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccce-------------------ehHHHHH
Confidence 46666777888776532 234566677888887665554 4577777654 1244455
Q ss_pred HHHcCChhH----HHHHHhcCCCCCCCCcchhHHHHHhcCCHHHHHHHH----HcCCCCC
Q 038432 421 AISSKHHSI----FRILYHCTAISDPYTAGDLLCTAEKRNDMSVMEELV----KYGLNVD 472 (602)
Q Consensus 421 A~~~~~~~~----~~~Ll~~g~~~~~~~g~t~L~~A~~~~~~~~~~~Ll----~~ga~~n 472 (602)
.+..|..+- .+.+.+.|..++...-.+.+...++.|+.+-+..++ +.|..++
T Consensus 150 ~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps 209 (501)
T 4g26_A 150 FCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVS 209 (501)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBC
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcC
Confidence 567787654 444567788888766667888888999976555554 4565554
No 216
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=27.03 E-value=93 Score=30.03 Aligned_cols=51 Identities=8% Similarity=0.164 Sum_probs=33.9
Q ss_pred ceecCCCCeEEcc-CCCCCeEEEEEEeEEEEEEeccCceeEEEEeCCCCeee
Q 038432 205 AEYIPPREDVIMQ-NEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFG 255 (602)
Q Consensus 205 ~~~~~~g~~i~~~-g~~~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~fG 255 (602)
...+.||...-.. -....++++|++|++.+...+.+.+.....+++||.+-
T Consensus 56 ~~~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~g~~~~~~l~~GD~~~ 107 (361)
T 2vqa_A 56 YMSLEPGAIRELHWHANAAEWAYVMEGRTRITLTSPEGKVEIADVDKGGLWY 107 (361)
T ss_dssp EEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECTTSCEEEEEEETTEEEE
T ss_pred EEEEcCCCCCCceeCCCCCEEEEEEEeEEEEEEEeCCCcEEEEEEcCCCEEE
Confidence 4556788765433 33378999999999998764432222346889998763
No 217
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=25.61 E-value=90 Score=30.49 Aligned_cols=52 Identities=8% Similarity=0.086 Sum_probs=34.5
Q ss_pred cceecCCCCeEEccCCCCCeEEEEEEeEEEEEEeccCceeEEEEeCCCCeee
Q 038432 204 KAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFG 255 (602)
Q Consensus 204 ~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~fG 255 (602)
....+.||..+-..--...++++|++|++++...+.+.+.....+++||++-
T Consensus 82 ~~~~l~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~g~~~~~~l~~GD~~~ 133 (385)
T 1j58_A 82 VNMRLKPGAIRELHWHKEAEWAYMIYGSARVTIVDEKGRSFIDDVGEGDLWY 133 (385)
T ss_dssp EEEEECTTCEEEEEEESSCEEEEEEEEEEEEEEECTTSCEEEEEEETTEEEE
T ss_pred EEEEECCCCCCCCccCChheEEEEEeeeEEEEEEeCCCcEEEEEeCCCCEEE
Confidence 3456788876543333367899999999998765432233344789998763
No 218
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}
Probab=25.57 E-value=94 Score=27.55 Aligned_cols=45 Identities=22% Similarity=0.238 Sum_probs=29.1
Q ss_pred ecCCCCeEEccCCCCCeEEEEEEeEEEEEEeccCceeEEEEeCCCCeee
Q 038432 207 YIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFG 255 (602)
Q Consensus 207 ~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~fG 255 (602)
.+.||..+=.-.-+..++|+|++|.+++...++ ....+++|+.+=
T Consensus 138 ~l~PG~~yP~HsHp~EEiy~VLsG~~e~~v~~g----~~~~l~pGd~v~ 182 (217)
T 4b29_A 138 YWGPGLDYGWHEHLPEELYSVVSGRALFHLRNA----PDLMLEPGQTRF 182 (217)
T ss_dssp EECSSCEEEEEECSSEEEEEEEEECEEEEETTS----CCEEECTTCEEE
T ss_pred EECCCCcCCCCCCCCceEEEEEeCCEEEEECCC----CEEecCCCCEEE
Confidence 345554433333456789999999999876433 234678888663
No 219
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=24.62 E-value=75 Score=25.62 Aligned_cols=45 Identities=11% Similarity=-0.017 Sum_probs=29.8
Q ss_pred eecCCCCeEEccCCCCCeEEEEEEeEEEEEEeccCceeEEEEeCCCCeeehh
Q 038432 206 EYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFGEV 257 (602)
Q Consensus 206 ~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~fGe~ 257 (602)
..+.||..-.. ...+++++|++|++.+... + + ...+++||.+-..
T Consensus 62 ~~~~pG~~~~h--~~~~E~~~VLeG~~~l~~~-g-~---~~~l~~GD~i~~p 106 (133)
T 2pyt_A 62 MQWDNAFFPWT--LNYDEIDMVLEGELHVRHE-G-E---TMIAKAGDVMFIP 106 (133)
T ss_dssp EEEEEEEEEEE--CSSEEEEEEEEEEEEEEET-T-E---EEEEETTCEEEEC
T ss_pred EEECCCCcccc--CCCCEEEEEEECEEEEEEC-C-E---EEEECCCcEEEEC
Confidence 44667733222 2357899999999999864 2 2 2378999987533
No 220
>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A*
Probab=24.57 E-value=1.1e+02 Score=26.51 Aligned_cols=33 Identities=18% Similarity=0.322 Sum_probs=25.2
Q ss_pred CeEEEEEEeEEEEEEeccCceeEEEEeCCCCee
Q 038432 222 DDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMF 254 (602)
Q Consensus 222 ~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~f 254 (602)
.++++|++|++.+...+...+.....+++||.+
T Consensus 97 ~E~~~Vl~G~~~~~i~~~~g~~~~~~l~~GD~v 129 (190)
T 1x82_A 97 AEVYVALKGKGGMLLQTPEGDAKWISMEPGTVV 129 (190)
T ss_dssp CEEEEEEESCEEEEEECTTCCEEEEEECTTCEE
T ss_pred CEEEEEEcCEEEEEEcCcCCcEEEEEECCCcEE
Confidence 689999999999886554333445689999976
No 221
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=24.13 E-value=60 Score=25.85 Aligned_cols=45 Identities=18% Similarity=0.152 Sum_probs=28.9
Q ss_pred cCCCCeEEccCCCCCeEEEEEEeEEEEEEeccCceeEEEEeCCCCeeehh
Q 038432 208 IPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFGEV 257 (602)
Q Consensus 208 ~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~fGe~ 257 (602)
..||..-....+ .+++++|++|++.+...++ . ...+++||.+-..
T Consensus 56 ~~pG~~~~~~~~-~~E~~~Vl~G~~~l~~~~g-~---~~~l~~GD~~~ip 100 (123)
T 3bcw_A 56 STSGSFQSNTTG-YIEYCHIIEGEARLVDPDG-T---VHAVKAGDAFIMP 100 (123)
T ss_dssp EEEEEEECCCTT-EEEEEEEEEEEEEEECTTC-C---EEEEETTCEEEEC
T ss_pred ECCCceeeEcCC-CcEEEEEEEEEEEEEECCC-e---EEEECCCCEEEEC
Confidence 455554433222 2789999999999986332 2 2468999987533
No 222
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A
Probab=24.06 E-value=88 Score=28.90 Aligned_cols=38 Identities=18% Similarity=0.273 Sum_probs=27.2
Q ss_pred CCCCCeEEEEEEeEEEEEEeccCceeEEEEeCCCCeeeh
Q 038432 218 NEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFGE 256 (602)
Q Consensus 218 g~~~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~fGe 256 (602)
-+..+++|++++|...+...++++ ..--.+++|++|=-
T Consensus 48 ~~~~dE~FyqlkG~m~l~~~d~g~-~~~V~i~eGemfll 85 (286)
T 2qnk_A 48 IEEGEEVFYQLEGDMVLRVLEQGK-HRDVVIRQGEIFLL 85 (286)
T ss_dssp ECSSCEEEEEEESCEEEEEEETTE-EEEEEECTTEEEEE
T ss_pred CCCCCeEEEEEeCeEEEEEEeCCc-eeeEEECCCeEEEe
Confidence 445778999999998887655432 33347899998843
No 223
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=24.04 E-value=92 Score=27.79 Aligned_cols=66 Identities=11% Similarity=-0.032 Sum_probs=42.9
Q ss_pred ccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEeccCceeEEEEeCCCCeeehhhhhcCCCceeEEEE-cceeEEE
Q 038432 203 MKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFGEVGALCCRPQIYTYRT-KTLSQLL 278 (602)
Q Consensus 203 ~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~fGe~~ll~~~~~~~tv~a-~~~~~l~ 278 (602)
+....+.||..+-..--+...+++|++|++++...+. ...+++||.+-..+ ..+..+.+ .+.++++
T Consensus 155 ~~~~~~~~G~~~~~H~H~~~e~~~Vl~G~~~~~i~g~-----~~~l~~Gd~i~ip~-----~~~H~~~~~~~~~~~l 221 (227)
T 3rns_A 155 MTIMSFWKGESLDPHKAPGDALVTVLDGEGKYYVDGK-----PFIVKKGESAVLPA-----NIPHAVEAETENFKML 221 (227)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEEEEEEEEETTE-----EEEEETTEEEEECT-----TSCEEEECCSSCEEEE
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEeEEEEEEECCE-----EEEECCCCEEEECC-----CCcEEEEeCCCCEEEE
Confidence 3456788998876555556789999999999875322 35788888764322 22345555 5555544
No 224
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}
Probab=23.75 E-value=68 Score=26.70 Aligned_cols=45 Identities=13% Similarity=0.177 Sum_probs=30.1
Q ss_pred ceecCCCCe-E-EccCCCCCeEEEEEEeEEEEEEeccCceeEEEEeCCCCee
Q 038432 205 AEYIPPRED-V-IMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMF 254 (602)
Q Consensus 205 ~~~~~~g~~-i-~~~g~~~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~f 254 (602)
...+.||.. . ...-....++++|++|++.+...+. ...+++||++
T Consensus 50 ~~~l~pg~~~~~~H~H~~~~E~~~Vl~G~~~~~~~~~-----~~~l~~Gd~i 96 (162)
T 3l2h_A 50 LIQIEPGKESTEYHLHHYEEEAVYVLSGKGTLTMEND-----QYPIAPGDFV 96 (162)
T ss_dssp EEEECTTCBSSSSBEESSCCEEEEEEESCEEEEETTE-----EEEECTTCEE
T ss_pred EEEECCCCcCCCCccCCCCCEEEEEEEEEEEEEECCE-----EEEeCCCCEE
Confidence 355677763 2 2222346789999999999875321 3578999977
No 225
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=23.53 E-value=81 Score=26.19 Aligned_cols=31 Identities=13% Similarity=0.297 Sum_probs=23.2
Q ss_pred CCCeEEEEEEeEEEEEEeccCceeEEEEeCCCCeee
Q 038432 220 APDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFG 255 (602)
Q Consensus 220 ~~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~fG 255 (602)
..+++++|++|++++.. ++ ....+++||.+-
T Consensus 83 ~~eE~~yVLeG~~~l~i-~g----~~~~l~~GD~i~ 113 (151)
T 4axo_A 83 NYDEIDYVIDGTLDIII-DG----RKVSASSGELIF 113 (151)
T ss_dssp SSEEEEEEEEEEEEEEE-TT----EEEEEETTCEEE
T ss_pred CCcEEEEEEEeEEEEEE-CC----EEEEEcCCCEEE
Confidence 45678999999999986 22 235789999774
No 226
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=23.52 E-value=37 Score=20.03 Aligned_cols=12 Identities=8% Similarity=0.398 Sum_probs=9.0
Q ss_pred HHHHHHHHHHhh
Q 038432 59 SAMYWSITTMTT 70 (602)
Q Consensus 59 ~s~ywa~~t~~t 70 (602)
+|+||+...+..
T Consensus 15 TSLy~GLLlifv 26 (37)
T 3arc_L 15 TSLYLGLLLILV 26 (37)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHH
Confidence 789998876543
No 227
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}
Probab=23.47 E-value=63 Score=27.38 Aligned_cols=32 Identities=16% Similarity=0.084 Sum_probs=23.6
Q ss_pred CCCeEEEEEEeEEEEEEeccCceeEEEEeCCCCeeeh
Q 038432 220 APDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFGE 256 (602)
Q Consensus 220 ~~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~fGe 256 (602)
.+..++||++|.+++...+. ...+++|++|-.
T Consensus 109 ~gEE~~yVLeG~v~vtl~g~-----~~~L~~Gds~~i 140 (166)
T 2vpv_A 109 RTYITFHVIQGIVEVTVCKN-----KFLSVKGSTFQI 140 (166)
T ss_dssp SEEEEEEEEESEEEEEETTE-----EEEEETTCEEEE
T ss_pred CceEEEEEEEeEEEEEECCE-----EEEEcCCCEEEE
Confidence 34569999999999986322 347899998753
No 228
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=23.46 E-value=1.2e+02 Score=26.03 Aligned_cols=45 Identities=11% Similarity=0.073 Sum_probs=30.3
Q ss_pred eecCCCCeEEc--cCCCCCeEEEEEEeEEEEEEeccCceeEEEEeCCCCeee
Q 038432 206 EYIPPREDVIM--QNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFG 255 (602)
Q Consensus 206 ~~~~~g~~i~~--~g~~~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~fG 255 (602)
..++||..... -.....++++|++|++.+...+ ....+++||.+-
T Consensus 109 ~~~~pg~~~~~~~H~h~~~E~~~Vl~G~~~~~~~~-----~~~~l~~GD~i~ 155 (192)
T 1y9q_A 109 ITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFFDE-----QWHELQQGEHIR 155 (192)
T ss_dssp EEECTTCEEEECCCSTTCEEEEEEEESCEEEEETT-----EEEEECTTCEEE
T ss_pred EEECCCCCccCCCCCCCCEEEEEEEEeEEEEEECC-----EEEEeCCCCEEE
Confidence 45677776542 2233468999999999987632 234789999773
No 229
>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B
Probab=23.45 E-value=69 Score=32.17 Aligned_cols=53 Identities=11% Similarity=0.208 Sum_probs=37.5
Q ss_pred hccceecCCCCeEEccCCCCCeEEEEEEeEEEEEEeccCceeEEEEeCCCCeee
Q 038432 202 KMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFG 255 (602)
Q Consensus 202 ~~~~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~fG 255 (602)
.+....+.||..+-..--.++++++|++|++.+.....+.. ....+++||.+-
T Consensus 87 s~~~~~l~Pgg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~-~~~~l~~GDv~~ 139 (445)
T 2cav_A 87 RVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGR-DTYKLDQGDAIK 139 (445)
T ss_dssp EEEEEEECSSEEEEEEEESSEEEEEEEESEEEEEEEETTEE-EEEEEETTEEEE
T ss_pred EEEEEEECCCcCccCcCCCCceEEEEEeCEEEEEEEeCCCC-EEEEecCCCEEE
Confidence 33456788887776655556789999999988864333322 567899999874
No 230
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=23.22 E-value=1.3e+02 Score=29.29 Aligned_cols=52 Identities=13% Similarity=0.087 Sum_probs=33.8
Q ss_pred ceecCCCCeEEccCCCC-CeEEEEEEeEEEEEEeccCceeEEEEeCCCCeeeh
Q 038432 205 AEYIPPREDVIMQNEAP-DDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFGE 256 (602)
Q Consensus 205 ~~~~~~g~~i~~~g~~~-~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~fGe 256 (602)
...+.||...-..--.. .++++|++|++.+.....+.......+++||.|-.
T Consensus 261 ~~~l~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i~~~~g~~~~~~l~~GD~~~i 313 (385)
T 1j58_A 261 LVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFNYQAGDVGYV 313 (385)
T ss_dssp EEEECTTCEEEEEECSSSCEEEEEEESEEEEEEEEETTEEEEEEEESSCEEEE
T ss_pred EEEECCCcccCceeCCCCCEEEEEEeCeEEEEEEcCCCcEEEEEEcCCCEEEE
Confidence 45678887765433334 78999999999887542222123457899998743
No 231
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Probab=23.06 E-value=75 Score=26.63 Aligned_cols=46 Identities=13% Similarity=0.213 Sum_probs=30.3
Q ss_pred ceecCCCCeEE--ccCCCCCeEEEEEEeEEEEEEeccCceeEEEEeCCCCeee
Q 038432 205 AEYIPPREDVI--MQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFG 255 (602)
Q Consensus 205 ~~~~~~g~~i~--~~g~~~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~fG 255 (602)
...+.||.... ......+++++|++|++++...+. ...+++||.+-
T Consensus 47 ~~~l~pG~~~~~~H~H~~~eE~~~Vl~G~~~~~~~~~-----~~~l~~GD~i~ 94 (163)
T 3i7d_A 47 LVRLEPGAKSSLRHYHMEQDEFVMVTEGALVLVDDQG-----EHPMVPGDCAA 94 (163)
T ss_dssp EEEECTTCBSSSSEEESSCCEEEEEEESCEEEEETTE-----EEEECTTCEEE
T ss_pred EEEECCCCcCCCCccCCCCcEEEEEEECEEEEEECCE-----EEEeCCCCEEE
Confidence 35567776442 222334689999999999976322 35788998764
No 232
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=23.03 E-value=1.4e+02 Score=28.79 Aligned_cols=53 Identities=19% Similarity=0.253 Sum_probs=34.9
Q ss_pred ccceecCCCCeEEcc-CCCCCeEEEEEEeEEEEEEeccCceeEEEEeCCCCeee
Q 038432 203 MKAEYIPPREDVIMQ-NEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFG 255 (602)
Q Consensus 203 ~~~~~~~~g~~i~~~-g~~~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~fG 255 (602)
+....+.||..+-.. .....++++|++|++.+...+.+.+.....+++||+|-
T Consensus 236 ~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~v~~~~g~~~~~~l~~GD~~~ 289 (361)
T 2vqa_A 236 GALIHLEPGAMRQLHWHPNADEWQYVLDGEMDLTVFASEGKASVSRLQQGDVGY 289 (361)
T ss_dssp EEEEEECTTCEEEEEECSSCCEEEEEEESCEEEEEECSTTCEEEEEECTTCEEE
T ss_pred EEEEEECCCcccccccCCCCCEEEEEEeCEEEEEEEcCCCcEEEEEECCCCEEE
Confidence 344567888766533 23347899999999988753222223456889999874
No 233
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=22.99 E-value=62 Score=27.37 Aligned_cols=45 Identities=13% Similarity=0.135 Sum_probs=29.1
Q ss_pred eecCCCCeEEccCCCCCeEEEEEEeEEEEEEeccCceeEEEEeCCCCeee
Q 038432 206 EYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFG 255 (602)
Q Consensus 206 ~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~fG 255 (602)
..+.||..+-..--....+++|++|++++...+ ....+++||++-
T Consensus 58 ~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~v~g-----~~~~l~~GD~i~ 102 (166)
T 3jzv_A 58 FEVGPGGHSTLERHQHAHGVMILKGRGHAMVGR-----AVSAVAPYDLVT 102 (166)
T ss_dssp EEEEEEEECCCBBCSSCEEEEEEEECEEEEETT-----EEEEECTTCEEE
T ss_pred EEECCCCccCceeCCCcEEEEEEeCEEEEEECC-----EEEEeCCCCEEE
Confidence 345666554333334567899999999987532 145788898763
No 234
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=22.96 E-value=66 Score=26.84 Aligned_cols=43 Identities=14% Similarity=0.190 Sum_probs=27.9
Q ss_pred ecCCCCeEEccCCCCCeEEEEEEeEEEEEEeccCceeEEEEeCCCCee
Q 038432 207 YIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMF 254 (602)
Q Consensus 207 ~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~f 254 (602)
.+.||..+-..--....+++|++|++++...+ ....+++||++
T Consensus 50 ~l~pG~~~~~H~H~~~E~~~Vl~G~~~v~v~g-----~~~~l~~Gd~i 92 (156)
T 3kgz_A 50 EVDEGGYSTLERHAHVHAVMIHRGHGQCLVGE-----TISDVAQGDLV 92 (156)
T ss_dssp EEEEEEECCCBBCSSCEEEEEEEEEEEEEETT-----EEEEEETTCEE
T ss_pred EECCCCccCceeCCCcEEEEEEeCEEEEEECC-----EEEEeCCCCEE
Confidence 44566544333334567899999999987532 13467888876
No 235
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=22.88 E-value=1.7e+02 Score=21.44 Aligned_cols=51 Identities=20% Similarity=0.300 Sum_probs=30.6
Q ss_pred CCeEEEEEEeEEEEEEeccCceeEEEEeCCCCeeehhhhhcCCCceeEEEEcceeEEEEee
Q 038432 221 PDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFGEVGALCCRPQIYTYRTKTLSQLLRLK 281 (602)
Q Consensus 221 ~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~fGe~~ll~~~~~~~tv~a~~~~~l~~l~ 281 (602)
...+++|++|.+.+...+. ...+++|+.+-.. ......+.+.+.+.++.+.
T Consensus 50 ~~e~~~v~~G~~~~~~~~~-----~~~l~~Gd~~~ip-----~~~~H~~~~~~~~~~l~i~ 100 (102)
T 3d82_A 50 TDEVFIVMEGTLQIAFRDQ-----NITLQAGEMYVIP-----KGVEHKPMAKEECKIMIIE 100 (102)
T ss_dssp CCEEEEEEESEEEEECSSC-----EEEEETTEEEEEC-----TTCCBEEEEEEEEEEEEEE
T ss_pred CcEEEEEEeCEEEEEECCE-----EEEEcCCCEEEEC-----CCCeEeeEcCCCCEEEEEE
Confidence 3789999999999875322 2457888865222 1222334444566666554
No 236
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9
Probab=22.74 E-value=1.2e+02 Score=24.84 Aligned_cols=47 Identities=13% Similarity=0.183 Sum_probs=30.6
Q ss_pred ceecCCCCeEEccCCCCCeEEEEEEeEEEEEEeccCceeEEEEeCCCCeee
Q 038432 205 AEYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFG 255 (602)
Q Consensus 205 ~~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~fG 255 (602)
...+.||..+-..--....+++|++|.+.+...+. . ...+++|+.+-
T Consensus 52 ~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~--~--~~~l~~Gd~i~ 98 (147)
T 2f4p_A 52 DVVFEPGARTHWHSHPGGQILIVTRGKGFYQERGK--P--ARILKKGDVVE 98 (147)
T ss_dssp EEEECTTCEECSEECTTCEEEEEEEEEEEEEETTS--C--CEEEETTCEEE
T ss_pred EEEECCCCccCceECCCceEEEEEeCEEEEEECCE--E--EEEECCCCEEE
Confidence 35567777654333334689999999999875332 1 13678888774
No 237
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Probab=22.37 E-value=82 Score=25.18 Aligned_cols=45 Identities=22% Similarity=0.343 Sum_probs=29.7
Q ss_pred ceecCCCCeEEccCCC-CCeEEEEEEeEEEEEEeccCceeEEEEeCCCCee
Q 038432 205 AEYIPPREDVIMQNEA-PDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMF 254 (602)
Q Consensus 205 ~~~~~~g~~i~~~g~~-~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~f 254 (602)
...++||..+-..--. ...+++|++|++.+...+ ....+++||.+
T Consensus 61 ~~~~~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~~-----~~~~l~~Gd~i 106 (133)
T 1o4t_A 61 RMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHDNG-----KDVPIKAGDVC 106 (133)
T ss_dssp EEEECTTCEEEEEECCSEEEEEEEEESEEEEEETT-----EEEEEETTEEE
T ss_pred EEEECCCCccCceECCCccEEEEEEeCEEEEEECC-----EEEEeCCCcEE
Confidence 3457787765432222 357999999999987532 23467888876
No 238
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10
Probab=22.33 E-value=75 Score=25.07 Aligned_cols=45 Identities=9% Similarity=0.086 Sum_probs=28.9
Q ss_pred eecCCCCeEEccCCCCCeEEEEEEeEEEEEEeccCceeEEEEeCCCCeee
Q 038432 206 EYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFG 255 (602)
Q Consensus 206 ~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~fG 255 (602)
..+.||...-..--....+++|++|.+.+...+. ...+++|+.+-
T Consensus 53 ~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i~~~-----~~~l~~Gd~i~ 97 (126)
T 1vj2_A 53 FTVEPGGLIDRHSHPWEHEIFVLKGKLTVLKEQG-----EETVEEGFYIF 97 (126)
T ss_dssp EEEEEEEEEEEECCSSCEEEEEEESEEEEECSSC-----EEEEETTEEEE
T ss_pred EEECCCCcCCceeCCCcEEEEEEEeEEEEEECCE-----EEEECCCCEEE
Confidence 4456665543333346789999999999875322 24678888663
No 239
>1v54_M VIIIB, IX, cytochrome C oxidase polypeptide VIII-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.7.1 PDB: 1oco_M* 1occ_M* 1ocz_M* 1ocr_M* 1v55_M* 2dyr_M* 2dys_M* 2eij_M* 2eik_M* 2eil_M* 2eim_M* 2ein_M* 2occ_M* 2ybb_X* 2zxw_M* 3abk_M* 3abl_M* 3abm_M* 3ag1_M* 3ag2_M* ...
Probab=22.27 E-value=1.5e+02 Score=18.83 Aligned_cols=31 Identities=10% Similarity=0.168 Sum_probs=23.4
Q ss_pred ccccchhHHHHHHHHHHHHHHH-HHHHHHHHH
Q 038432 77 HAVNTVEMIFIIFYMLFNLGLT-AYLIGNMTN 107 (602)
Q Consensus 77 ~~~~~~e~~~~~~~~~~g~~~~-~~~i~~i~~ 107 (602)
.+.+..|..+.+.+++.+++.- ++++.++-+
T Consensus 8 ~~~s~~E~aigl~v~f~~~L~PagWVLshL~~ 39 (46)
T 1v54_M 8 TPTSPKEQAIGLSVTFLSFLLPAGWVLYHLDN 39 (46)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4567889999888888887777 777766543
No 240
>3pjz_A Potassium uptake protein TRKH; structural genomics, PSI-2, protein structure initiative, NE consortium on membrane protein structure; 3.51A {Vibrio parahaemolyticus}
Probab=22.27 E-value=3e+02 Score=27.94 Aligned_cols=90 Identities=13% Similarity=0.172 Sum_probs=53.2
Q ss_pred chHHHHHHHHHHHHHHHhhcccC--ccccccchhHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHhhhHhHHH
Q 038432 52 SLWIRYISAMYWSITTMTTVGYG--DLHAVNTVEMIFIIFYMLFNLGL-----------TAYLIGNMTNLVVEGTRRTME 118 (602)
Q Consensus 52 ~~~~~Y~~s~ywa~~t~~tvGyg--d~~~~~~~e~~~~~~~~~~g~~~-----------~~~~i~~i~~~~~~~~~~~~~ 118 (602)
++.++...|++-+++..||.||. |+...+..-.++.+++|++|... +..++..+..-+......+.
T Consensus 302 ~~~~~l~~a~Fq~vS~~TttGF~t~d~~~w~~~~~~ll~~LMfIGG~~GSTaGGIKv~r~~il~~~~~~el~~~~~P~~- 380 (494)
T 3pjz_A 302 SPYDAFDQALFQTVSISTTAGFTTTGFADWPLFLPVLLLFSSFIGGCAGSTGGGMKVIRILLLTLQGARELKRLVHPRA- 380 (494)
T ss_dssp SHHHHHHHHHHHHHHTTTTCCCCSCCCSSCCTHHHHHHHHHTTSCSCTTSSCCSSCHHHHHHHHHHHHHHHHHHHCSSS-
T ss_pred CHHHHHHHHHHheeecccCCcccccChHhCCHHHHHHHHHHHHHcCCcccCCCchhHHHHHHHHHHHHHHHhcccCCCc-
Confidence 45667888999999999999996 44445555667777778877533 22222222211111100000
Q ss_pred HhhhHHHHHhhhhcCCCChhHHHHHHHHHH
Q 038432 119 FRNSIEAASNFVGRNRLPPRLKKQILAYMC 148 (602)
Q Consensus 119 ~~~~~~~~~~~m~~~~l~~~l~~ri~~y~~ 148 (602)
...--+..+.+|++..+++-.++-
T Consensus 381 ------v~~v~~~~r~i~~~~v~~~~~~~~ 404 (494)
T 3pjz_A 381 ------VYTIKVGGSALPQRVVDAVWGFFS 404 (494)
T ss_dssp ------CCCCCSSSCCCTTTHHHHHHHHHH
T ss_pred ------ceeeeECCEECCHHHHHHHHHHHH
Confidence 011234678899999999887764
No 241
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=22.11 E-value=1e+02 Score=24.18 Aligned_cols=45 Identities=11% Similarity=0.217 Sum_probs=28.6
Q ss_pred eecCCCCeEEccCCCCCeEEEEEEeEEEEEEeccCceeEEEEeCCCCeee
Q 038432 206 EYIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFG 255 (602)
Q Consensus 206 ~~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~fG 255 (602)
..+.||...-..--...++++|++|++.+...+. ...+++|+.+-
T Consensus 39 ~~~~pg~~~~~H~H~~~Ei~~v~~G~~~~~i~~~-----~~~l~~Gd~~~ 83 (128)
T 4i4a_A 39 CIVRPETKSFRHSHNEYELFIVIQGNAIIRINDE-----DFPVTKGDLII 83 (128)
T ss_dssp EEECTTEECCCBCCSSEEEEEEEESEEEEEETTE-----EEEEETTCEEE
T ss_pred EEECCCCccCCEecCCeEEEEEEeCEEEEEECCE-----EEEECCCcEEE
Confidence 3455665333222345679999999999876322 34678888763
No 242
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=21.55 E-value=65 Score=19.48 Aligned_cols=17 Identities=24% Similarity=0.307 Sum_probs=12.0
Q ss_pred HHHHHHcCcHHHHHHHH
Q 038432 482 IEIAMAENNVEMVNFLV 498 (602)
Q Consensus 482 Lh~A~~~~~~~iv~~Ll 498 (602)
+..||..|+.+.++.|-
T Consensus 17 iyvA~seGd~etv~~Le 33 (40)
T 1gp8_A 17 MDAAASKGDVETYRKLK 33 (40)
T ss_dssp HHHHHTTSCHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHH
Confidence 45677777777777764
No 243
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=21.41 E-value=74 Score=24.55 Aligned_cols=45 Identities=18% Similarity=0.237 Sum_probs=27.2
Q ss_pred ecCCCCeEEccCCCCCeEEEEEEeEEEEEEeccCceeEEEEeCCCCeee
Q 038432 207 YIPPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFG 255 (602)
Q Consensus 207 ~~~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~fG 255 (602)
.+.||...-..--....+++|++|.+.+...+. . ...+++||.+-
T Consensus 33 ~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i~~~--~--~~~l~~Gd~i~ 77 (117)
T 2b8m_A 33 VLPRGEQMPKHYSNSYVHLIIIKGEMTLTLEDQ--E--PHNYKEGNIVY 77 (117)
T ss_dssp EEETTCBCCCEECSSCEEEEEEESEEEEEETTS--C--CEEEETTCEEE
T ss_pred EECCCCcCCCEeCCCcEEEEEEeCEEEEEECCE--E--EEEeCCCCEEE
Confidence 345555432222234678999999999876332 1 12678888663
No 244
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=21.23 E-value=94 Score=26.78 Aligned_cols=49 Identities=16% Similarity=0.101 Sum_probs=31.2
Q ss_pred eecCCCCeEE---ccCCCCCeEEEEEEeEEEEEEeccCceeEEEEeCCCCeee
Q 038432 206 EYIPPREDVI---MQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFG 255 (602)
Q Consensus 206 ~~~~~g~~i~---~~g~~~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~fG 255 (602)
..+.||...- ...-...++++|++|++++...+++ ......+++||++-
T Consensus 122 ~~~~pg~~~~~~~~h~h~~~E~~~Vl~G~~~~~~~~~~-~~~~~~l~~GD~~~ 173 (198)
T 2bnm_A 122 VDVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKWGDKE-NPKEALLPTGASMF 173 (198)
T ss_dssp EEECCCCGGGCCCCCCCSSCEEEEEEESCEEEEESCTT-SCEEEEECTTCEEE
T ss_pred EEEcCCCCCcccccccCCCeEEEEEEeeeEEEEECCcC-CcccEEECCCCEEE
Confidence 3456766543 1223346899999999999864421 12345799999774
No 245
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=21.03 E-value=70 Score=24.72 Aligned_cols=36 Identities=19% Similarity=0.210 Sum_probs=24.8
Q ss_pred CCCCeEEEEEEeEEEEEEeccCceeEEEEeCCCCeeehh
Q 038432 219 EAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFGEV 257 (602)
Q Consensus 219 ~~~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~fGe~ 257 (602)
...+++++|++|++++...+.. ....+++||++--.
T Consensus 51 ~~~~E~~~Vl~G~~~l~~~~~~---~~~~l~~Gd~i~ip 86 (112)
T 2opk_A 51 SPQDEWVMVVSGSAGIECEGDT---APRVMRPGDWLHVP 86 (112)
T ss_dssp CSSEEEEEEEESCEEEEETTCS---SCEEECTTEEEEEC
T ss_pred CCccEEEEEEeCeEEEEECCEE---EEEEECCCCEEEEC
Confidence 3456799999999999764331 01368999977433
No 246
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=20.68 E-value=1.2e+02 Score=27.53 Aligned_cols=49 Identities=12% Similarity=0.093 Sum_probs=34.0
Q ss_pred hccceecCCCCeEEc-cCCCCCeEEEEEEeEEEEEEeccCceeEEEEeCCCCeee
Q 038432 202 KMKAEYIPPREDVIM-QNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFG 255 (602)
Q Consensus 202 ~~~~~~~~~g~~i~~-~g~~~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~fG 255 (602)
.+....++||..+-. .--...+.++|++|+..+...+ ....+++||++-
T Consensus 166 ~~~~~tl~PG~~~~~~~~h~~ee~~~vLeG~~~~~~~~-----~~~~l~~GD~~~ 215 (246)
T 1sfn_A 166 MVSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKLEE-----NYYPVTAGDIIW 215 (246)
T ss_dssp EEEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEEETT-----EEEEEETTCEEE
T ss_pred EEEEEEECCCCccCcccCCCceEEEEEEECEEEEEECC-----EEEEcCCCCEEE
Confidence 344567888876653 3344567999999999987632 234789999764
No 247
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=20.47 E-value=1.3e+02 Score=22.52 Aligned_cols=66 Identities=15% Similarity=0.051 Sum_probs=36.3
Q ss_pred CCCCeEEccCCCCCeEEEEEEeEEEEEEeccCceeEEEEeCCCCeeehhhhhcCCCceeEEEEcceeEEEEeeHH
Q 038432 209 PPREDVIMQNEAPDDVYIIVSGEVEMIDYEMEKEIAVGTLQTGDMFGEVGALCCRPQIYTYRTKTLSQLLRLKTS 283 (602)
Q Consensus 209 ~~g~~i~~~g~~~~~ly~I~~G~v~i~~~~~~~~~~~~~l~~g~~fGe~~ll~~~~~~~tv~a~~~~~l~~l~~~ 283 (602)
.+|+.....-+....+++|++|.+.+...++ + ...+++||.+-..+ +.+ ....+.+.+.++.+...
T Consensus 36 ~~g~~~~H~H~~~~E~~~Vl~G~~~~~~~~~-~---~~~l~~Gd~~~ip~---~~~--H~~~~~~~~~~l~i~~~ 101 (107)
T 2i45_A 36 LLGDYGWHTHGYSDKVLFAVEGDMAVDFADG-G---SMTIREGEMAVVPK---SVS--HRPRSENGCSLVLIELS 101 (107)
T ss_dssp EEEECCCBCC--CCEEEEESSSCEEEEETTS-C---EEEECTTEEEEECT---TCC--EEEEEEEEEEEEEEECC
T ss_pred CCCCCcceeCCCCCEEEEEEeCEEEEEECCC-c---EEEECCCCEEEECC---CCc--EeeEeCCCeEEEEEECC
Confidence 3454332333333789999999999876441 1 34688998763221 222 33333345666655543
Done!