BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038434
(126 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2E1V|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
pdb|2E1V|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
Length = 454
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 61/125 (48%), Gaps = 4/125 (3%)
Query: 1 SKISPPSSDSVTASTLPLTYFDTLWLKFPPSERVFFYQITDLTFDLFNSVIXXXXXXXXX 60
S++SPP D++ +L LT+FD WL+ PP +FFY++ +V+
Sbjct: 13 SQVSPPP-DTLGDKSLQLTFFDFFWLRSPPINNLFFYELPITRSQFTETVVPNIKHSLSI 71
Query: 61 XXXXXXXXXXGHIMWPADSAKPAIYYFPDQNDGVSFTVAESDADFSHLSGNNGNREAVEF 120
+++PA + KP I Y + D V+ T AE + D + L+GN+ R +F
Sbjct: 72 TLKHFYPFVGKLVVYPAPTKKPEICYV--EGDSVAVTFAECNLDLNELTGNH-PRNCDKF 128
Query: 121 HHLTP 125
+ L P
Sbjct: 129 YDLVP 133
>pdb|2E1T|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1T|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1U|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
pdb|2E1U|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Length = 454
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 61/125 (48%), Gaps = 4/125 (3%)
Query: 1 SKISPPSSDSVTASTLPLTYFDTLWLKFPPSERVFFYQITDLTFDLFNSVIXXXXXXXXX 60
S++SPP D++ +L LT+FD WL+ PP +FFY++ +V+
Sbjct: 13 SQVSPPP-DTLGDKSLQLTFFDFFWLRSPPINNLFFYELPITRSQFTETVVPNIKHSLSI 71
Query: 61 XXXXXXXXXXGHIMWPADSAKPAIYYFPDQNDGVSFTVAESDADFSHLSGNNGNREAVEF 120
+++PA + KP I Y + D V+ T AE + D + L+GN+ R +F
Sbjct: 72 TLKHFYPFVGKLVVYPAPTKKPEICYV--EGDSVAVTFAECNLDLNELTGNH-PRNCDKF 128
Query: 121 HHLTP 125
+ L P
Sbjct: 129 YDLVP 133
>pdb|2XR7|A Chain A, Crystal Structure Of Nicotiana Tabacum Malonyltransferase
(Ntmat1) Complexed With Malonyl-Coa
Length = 453
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 56/122 (45%), Gaps = 5/122 (4%)
Query: 6 PSSDSVTASTLPLTYFDTLWLKFPPSERVFFYQITDLTFDLFNSVIXXXXXXXXXXXXXX 65
PS S T TLPLTYFD +WL F R+ FY++ D ++I
Sbjct: 12 PSPGSATELTLPLTYFDHVWLAFHRXRRILFYKLPISRPDFVQTII-PTLKDSLSLTLKY 70
Query: 66 XXXXXGHIMWPAD-SAKPAIYYFPDQNDGVSFTVAESDADFSHLSGNNGNREAVEFHHLT 124
G++ P D S P + Y + VS +ESD DF++L G + R +F+H
Sbjct: 71 YLPLAGNVACPQDWSGYPELRYV--TGNSVSVIFSESDXDFNYLIGYH-PRNTKDFYHFV 127
Query: 125 PQ 126
PQ
Sbjct: 128 PQ 129
>pdb|1ZTV|A Chain A, Crystal Structure Of A Duf72 Family Protein (Ef0366)
From Enterococcus Faecalis V583 At 3.10 A Resolution
pdb|1ZTV|B Chain B, Crystal Structure Of A Duf72 Family Protein (Ef0366)
From Enterococcus Faecalis V583 At 3.10 A Resolution
Length = 289
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 13 ASTLPLTYFDTLWLKFPPSERV 34
AS LPL DT + PP ERV
Sbjct: 39 ASHLPLVEMDTAYYGIPPKERV 60
>pdb|2QGA|B Chain B, Plasmodium Vivax Adenylosuccinate Lyase Pv003765 With
Amp Bound
pdb|2QGA|C Chain C, Plasmodium Vivax Adenylosuccinate Lyase Pv003765 With
Amp Bound
Length = 465
Score = 26.2 bits (56), Expect = 5.0, Method: Composition-based stats.
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 25 WLKFPPSERVFFYQITDLTFDLFNSV 50
WL F E +FF ++TD + ++ N +
Sbjct: 42 WLLFLNEEELFFEKVTDHSVEVLNQI 67
>pdb|2HVG|A Chain A, Crystal Structure Of Adenylosuccinate Lyase From
Plasmodium Vivax
pdb|2HVG|B Chain B, Crystal Structure Of Adenylosuccinate Lyase From
Plasmodium Vivax
Length = 482
Score = 26.2 bits (56), Expect = 5.0, Method: Composition-based stats.
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 25 WLKFPPSERVFFYQITDLTFDLFNSV 50
WL F E +FF ++TD + ++ N +
Sbjct: 59 WLLFLNEEELFFEKVTDHSVEVLNQI 84
>pdb|1VPY|A Chain A, Crystal Structure Of A Duf72 Family Protein (ef0366)
From Enterococcus Faecalis V583 At 2.52 A Resolution
Length = 289
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 13 ASTLPLTYFDTLWLKFPPSERV 34
AS LPL DT + PP ERV
Sbjct: 39 ASHLPLVEXDTAYYGIPPKERV 60
>pdb|4GWH|A Chain A, Crystal Structure Of Acyl-Coa Thioesterase Tesb From
Yersinia Pestis
pdb|4GWH|B Chain B, Crystal Structure Of Acyl-Coa Thioesterase Tesb From
Yersinia Pestis
pdb|4GWH|C Chain C, Crystal Structure Of Acyl-Coa Thioesterase Tesb From
Yersinia Pestis
pdb|4GWH|D Chain D, Crystal Structure Of Acyl-Coa Thioesterase Tesb From
Yersinia Pestis
pdb|4GWH|E Chain E, Crystal Structure Of Acyl-Coa Thioesterase Tesb From
Yersinia Pestis
pdb|4GWH|F Chain F, Crystal Structure Of Acyl-Coa Thioesterase Tesb From
Yersinia Pestis
pdb|4GWH|G Chain G, Crystal Structure Of Acyl-Coa Thioesterase Tesb From
Yersinia Pestis
pdb|4GWH|H Chain H, Crystal Structure Of Acyl-Coa Thioesterase Tesb From
Yersinia Pestis
Length = 288
Score = 25.0 bits (53), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 72 HIMWPADSAKPAIYYFPDQNDGVSFTVAESDA 103
+ + P DS+KP IY DG SF+ A
Sbjct: 63 YFLRPGDSSKPIIYDVETLRDGNSFSARRVSA 94
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,472,820
Number of Sequences: 62578
Number of extensions: 105181
Number of successful extensions: 146
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 135
Number of HSP's gapped (non-prelim): 8
length of query: 126
length of database: 14,973,337
effective HSP length: 87
effective length of query: 39
effective length of database: 9,529,051
effective search space: 371632989
effective search space used: 371632989
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)