Query 038434
Match_columns 126
No_of_seqs 103 out of 1013
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 11:01:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038434.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038434hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03157 spermidine hydroxycin 100.0 3.8E-28 8.2E-33 201.2 10.0 113 1-126 9-121 (447)
2 PF02458 Transferase: Transfer 99.9 5E-26 1.1E-30 185.5 8.9 112 1-125 9-121 (432)
3 PLN02663 hydroxycinnamoyl-CoA: 99.9 7.8E-26 1.7E-30 186.4 9.7 111 1-125 9-119 (431)
4 PLN00140 alcohol acetyltransfe 99.9 7.5E-26 1.6E-30 187.8 8.8 112 1-125 9-120 (444)
5 PLN02481 Omega-hydroxypalmitat 99.9 2.5E-24 5.4E-29 178.1 10.4 112 2-125 21-132 (436)
6 COG0771 MurD UDP-N-acetylmuram 25.2 97 0.0021 26.6 3.7 20 56-75 295-314 (448)
7 PLN00211 predicted protein; Pr 24.8 1.2E+02 0.0026 18.7 3.0 21 51-71 28-48 (61)
8 PF03007 WES_acyltransf: Wax e 24.1 2.2E+02 0.0048 21.9 5.3 52 30-84 19-71 (263)
9 PF00380 Ribosomal_S9: Ribosom 23.8 67 0.0015 22.5 2.1 20 50-69 65-84 (121)
10 COG3215 PilZ Tfp pilus assembl 22.9 47 0.001 23.1 1.1 31 67-101 62-92 (117)
11 PF02934 GatB_N: GatB/GatE cat 21.6 1.2E+02 0.0026 24.5 3.4 24 80-106 136-159 (289)
12 CHL00079 rps9 ribosomal protei 21.3 76 0.0017 22.6 2.0 19 50-68 74-92 (130)
13 PRK02801 primosomal replicatio 21.1 1.2E+02 0.0025 20.3 2.8 20 69-96 7-26 (101)
14 PF09369 DUF1998: Domain of un 20.9 1.2E+02 0.0026 19.1 2.8 12 30-41 34-45 (84)
15 PLN00210 40S ribosomal protein 20.9 84 0.0018 22.7 2.2 18 51-68 75-92 (141)
No 1
>PLN03157 spermidine hydroxycinnamoyl transferase; Provisional
Probab=99.95 E-value=3.8e-28 Score=201.25 Aligned_cols=113 Identities=24% Similarity=0.358 Sum_probs=93.5
Q ss_pred CeeeCCCCCCCCCceeeCCccccccCCCCCccEEEEEeCCCCCcCccccchHHHHHHHHHHhhhhhcccCeEEecCCCCC
Q 038434 1 SKISPPSSDSVTASTLPLTYFDTLWLKFPPSERVFFYQITDLTFDLFNSVILPKLADSLSLTLLHYLPLAGHIMWPADSA 80 (126)
Q Consensus 1 ~~V~Ps~~t~~~~~~l~LS~lD~~~~~~~~v~~v~fy~~~~~~~~~~~~~~~~~Lk~SLa~~L~~fyPlAGRl~~~~~~g 80 (126)
.+|+|++||| ...++||+||+.+ ...|++.||||+.+. .. .+ .+++++||+|||+||++||||||||++.++ |
T Consensus 9 ~~v~Ps~ptp--~~~~~LS~lD~~~-~~~~v~~v~fy~~~~-~~-~~-~~~~~~Lk~sLs~~L~~fyplAGRl~~~~~-g 81 (447)
T PLN03157 9 YTVKPAKPTW--TGRRSLSEWDQVG-TITHVPTIYFYSPPW-NT-SS-GSIIEILKDSLSRALVPFYPLAGRLRWIGG-G 81 (447)
T ss_pred EEECCCCCCC--CCccCCChhhhcc-ccccCCEEEEEeCCC-cc-cc-ccHHHHHHHHHHHHHhhccccCEEEEEcCC-C
Confidence 3699999994 5689999999975 456999999998653 21 11 356899999999999999999999998764 8
Q ss_pred CcEEEecCCCCCceEEEEEEeCCCcccccCCCCCCchhhccCCCCC
Q 038434 81 KPAIYYFPDQNDGVSFTVAESDADFSHLSGNNGNREAVEFHHLTPQ 126 (126)
Q Consensus 81 ~~~I~c~~~~~~Gv~fveA~~~~~l~~l~~~~~~~~~~~~~~Lvp~ 126 (126)
+++|+||+ +||.|+||+++++|+|+... .+.+.+++|+|.
T Consensus 82 ~~~i~c~~---~Gv~fveA~~~~~l~~~~~~---~~~~~~~~l~P~ 121 (447)
T PLN03157 82 RLELECNA---MGVLLIEAESEAKLDDFGDF---SPTPEFEYLIPS 121 (447)
T ss_pred cEEEEECC---CCeEEEEEEeCCcHHHhhcc---CCCHHHHhhcCC
Confidence 99999998 99999999999999999533 345567888873
No 2
>PF02458 Transferase: Transferase family; InterPro: IPR003480 This family includes a number of transferase enzymes. These include anthranilate N-hydroxycinnamoyl/benzoyltransferase that catalyzes the first committed reaction of phytoalexin biosynthesis []. Deacetylvindoline 4-O-acetyltransferase (2.3.1.107 from EC) catalyzes the last step in vindoline biosynthesis is also a member of this family []. The motif HXXXD is probably part of the active site. The family also includes trichothecene 3-O-acetyltransferase.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 2BGH_B 2E1U_B 2E1T_A 2E1V_A 2XR7_A 3B30_A 2RKT_A 3B2S_A 2RKV_A 2ZBA_C ....
Probab=99.93 E-value=5e-26 Score=185.54 Aligned_cols=112 Identities=32% Similarity=0.416 Sum_probs=86.8
Q ss_pred CeeeCCCCCCCCCceeeCCccc-cccCCCCCccEEEEEeCCCCCcCccccchHHHHHHHHHHhhhhhcccCeEEecCCCC
Q 038434 1 SKISPPSSDSVTASTLPLTYFD-TLWLKFPPSERVFFYQITDLTFDLFNSVILPKLADSLSLTLLHYLPLAGHIMWPADS 79 (126)
Q Consensus 1 ~~V~Ps~~t~~~~~~l~LS~lD-~~~~~~~~v~~v~fy~~~~~~~~~~~~~~~~~Lk~SLa~~L~~fyPlAGRl~~~~~~ 79 (126)
++|+|+.||| ...++||+|| +.+ ...|++.||||+.+.... . ..+++.||+|||++|++|||||||| ..+ +
T Consensus 9 ~~V~Ps~~tp--~~~~~LS~lD~~~~-~~~~~~~~~~y~~~~~~~-~--~~~~~~Lk~sLs~~L~~~~~lAGrl-~~~-~ 80 (432)
T PF02458_consen 9 SLVKPSSPTP--PHTLPLSNLDLQLM-PPYYVPVLLFYRPPSSSD-D--SDIVDNLKESLSKTLVHYYPLAGRL-RDP-D 80 (432)
T ss_dssp CEEE-STTS---TCEEE--HHHHHCC-GCSEEEEEEEEE--SSCH-H--HHHHHHHHHHHHHHHTTSGGGGSEE-ESS-C
T ss_pred EEEECCCCCC--CCcccCchhhcCcc-cccEEEEEEEecCccccc-c--chHHHHHHHHHHHhHhhCcccCcEE-ccc-c
Confidence 4799999995 4599999999 544 455899999999875221 1 2368999999999999999999999 666 7
Q ss_pred CCcEEEecCCCCCceEEEEEEeCCCcccccCCCCCCchhhccCCCC
Q 038434 80 AKPAIYYFPDQNDGVSFTVAESDADFSHLSGNNGNREAVEFHHLTP 125 (126)
Q Consensus 80 g~~~I~c~~~~~~Gv~fveA~~~~~l~~l~~~~~~~~~~~~~~Lvp 125 (126)
|+++|+||| +||.|+||+++.+++++... . .+...++.|+|
T Consensus 81 ~~~~i~c~d---~Gv~f~~a~~~~~l~~~~~~-~-~~~~~~~~l~p 121 (432)
T PF02458_consen 81 GRLEIDCND---DGVEFVEAEADGTLDDLLDL-E-PPSEFLRDLVP 121 (432)
T ss_dssp TTTEEEECT---TTEEEEEEEESS-HHHHCSS-S-CCGGGGGGGSS
T ss_pred cceEEEEec---CCCEEEEEecccceeecccc-c-cchHHHHHHhh
Confidence 999999998 99999999999999999766 3 45556777776
No 3
>PLN02663 hydroxycinnamoyl-CoA:shikimate/quinate hydroxycinnamoyltransferase
Probab=99.93 E-value=7.8e-26 Score=186.37 Aligned_cols=111 Identities=21% Similarity=0.320 Sum_probs=90.6
Q ss_pred CeeeCCCCCCCCCceeeCCccccccCCCCCccEEEEEeCCCCCcCccccchHHHHHHHHHHhhhhhcccCeEEecCCCCC
Q 038434 1 SKISPPSSDSVTASTLPLTYFDTLWLKFPPSERVFFYQITDLTFDLFNSVILPKLADSLSLTLLHYLPLAGHIMWPADSA 80 (126)
Q Consensus 1 ~~V~Ps~~t~~~~~~l~LS~lD~~~~~~~~v~~v~fy~~~~~~~~~~~~~~~~~Lk~SLa~~L~~fyPlAGRl~~~~~~g 80 (126)
++|+|+.|| + .+.++||+||+.+. ..|++.||||+.+. ....+ ..++||+|||++|++||||||||+.+++ |
T Consensus 9 ~~V~Ps~pt-p-~~~~~LS~lD~~~~-~~~~~~v~fY~~~~-~~~~~---~~~~Lk~sLs~~L~~~yplaGRl~~~~~-g 80 (431)
T PLN02663 9 TMVRPAEET-P-RRGLWNSNVDLVVP-RFHTPSVYFYRPTG-ASNFF---DPQVMKEALSKALVPFYPMAGRLRRDED-G 80 (431)
T ss_pred EEECCCCCC-C-CCcccCChhhcccc-cccccEEEEEcCCC-CCCcc---CHHHHHHHHHHHHhhccccceeeeECCC-C
Confidence 479999999 4 57999999999764 56999999999754 22111 2589999999999999999999998764 8
Q ss_pred CcEEEecCCCCCceEEEEEEeCCCcccccCCCCCCchhhccCCCC
Q 038434 81 KPAIYYFPDQNDGVSFTVAESDADFSHLSGNNGNREAVEFHHLTP 125 (126)
Q Consensus 81 ~~~I~c~~~~~~Gv~fveA~~~~~l~~l~~~~~~~~~~~~~~Lvp 125 (126)
+++|+||+ +||.|+||+++++++++... .+...+++|+|
T Consensus 81 ~~~i~c~~---~Gv~fv~A~~~~~l~~~~~~---~~~~~~~~l~P 119 (431)
T PLN02663 81 RIEIDCNA---EGVLFVEADTPSVIDDFGDF---APTLELRQLIP 119 (431)
T ss_pred CEEEEECC---CCceEEEEecCCCHHHhhcc---CCCHHHHhhcC
Confidence 99999988 99999999999999998432 23345667776
No 4
>PLN00140 alcohol acetyltransferase family protein; Provisional
Probab=99.93 E-value=7.5e-26 Score=187.80 Aligned_cols=112 Identities=21% Similarity=0.312 Sum_probs=89.2
Q ss_pred CeeeCCCCCCCCCceeeCCccccccCCCCCccEEEEEeCCCCCcCccccchHHHHHHHHHHhhhhhcccCeEEecCCCCC
Q 038434 1 SKISPPSSDSVTASTLPLTYFDTLWLKFPPSERVFFYQITDLTFDLFNSVILPKLADSLSLTLLHYLPLAGHIMWPADSA 80 (126)
Q Consensus 1 ~~V~Ps~~t~~~~~~l~LS~lD~~~~~~~~v~~v~fy~~~~~~~~~~~~~~~~~Lk~SLa~~L~~fyPlAGRl~~~~~~g 80 (126)
++|+|+.|||.+.+.++||+||+.. ...|++.+|||+.+. ....+...++++||+|||+||++||||||||+ .
T Consensus 9 ~~V~Ps~ptp~~~~~~~LS~lD~~~-~~~~~~~~~fY~~~~-~~~~~~~~~~~~Lk~sLs~~L~~fyplAGRl~-----~ 81 (444)
T PLN00140 9 ELIKPSSPSIHHLKPFKLSLLDQLT-PTTYIPMIFFYPTNN-NQNFKGLQISIQLKRSLSETLSTFYPFSGRVK-----D 81 (444)
T ss_pred ceeccCCCCccccccCCCChHHhcc-cccccceEEEeeCCC-cccccchhHHHHHHHHHHHHHhhhhccCcccc-----C
Confidence 4799999995434688999999864 467999999999754 22112135789999999999999999999999 3
Q ss_pred CcEEEecCCCCCceEEEEEEeCCCcccccCCCCCCchhhccCCCC
Q 038434 81 KPAIYYFPDQNDGVSFTVAESDADFSHLSGNNGNREAVEFHHLTP 125 (126)
Q Consensus 81 ~~~I~c~~~~~~Gv~fveA~~~~~l~~l~~~~~~~~~~~~~~Lvp 125 (126)
+++|+||+ +||.|+||+++++++|+... + +...+++|+|
T Consensus 82 ~~~i~cn~---~Gv~fveA~~~~~l~d~l~~--~-~~~~~~~l~p 120 (444)
T PLN00140 82 NLIIDNYE---EGVPFFETRVKGSLSDFLKH--P-QLELLNKFLP 120 (444)
T ss_pred CceeEccC---CCceEEEEEecCcHHHhcCC--C-CHHHHHhhCC
Confidence 58999998 99999999999999999543 2 2345666765
No 5
>PLN02481 Omega-hydroxypalmitate O-feruloyl transferase
Probab=99.91 E-value=2.5e-24 Score=178.10 Aligned_cols=112 Identities=18% Similarity=0.256 Sum_probs=91.0
Q ss_pred eeeCCCCCCCCCceeeCCccccccCCCCCccEEEEEeCCCCCcCccccchHHHHHHHHHHhhhhhcccCeEEecCCCCCC
Q 038434 2 KISPPSSDSVTASTLPLTYFDTLWLKFPPSERVFFYQITDLTFDLFNSVILPKLADSLSLTLLHYLPLAGHIMWPADSAK 81 (126)
Q Consensus 2 ~V~Ps~~t~~~~~~l~LS~lD~~~~~~~~v~~v~fy~~~~~~~~~~~~~~~~~Lk~SLa~~L~~fyPlAGRl~~~~~~g~ 81 (126)
+|+|+.|| + .++++||++|+.+ . .|++.+|||+.++ ..+ . ..++++||+||+++|++||||||||++.++ |+
T Consensus 21 ~V~Ps~pt-p-~~~~~LS~lD~~~-~-~~~~~~~fy~~~~-~~~-~-~~~~~~Lk~sLs~~L~~~~plAGRL~~~~~-g~ 92 (436)
T PLN02481 21 LVPPAEET-P-KGLYFLSNLDQNI-A-VIVRTVYCFKSEE-RGS-N-EDPVDVIKKALSKVLVHYYPLAGRLTISSE-GK 92 (436)
T ss_pred EeCCCCCC-C-CCceecCccccCc-c-eeeeEEEEECCCC-ccc-c-cCHHHHHHHHHHHHhccccCCCCeeeeCCC-Cc
Confidence 69999999 4 5799999999963 3 5899999999765 221 1 457899999999999999999999998764 89
Q ss_pred cEEEecCCCCCceEEEEEEeCCCcccccCCCCCCchhhccCCCC
Q 038434 82 PAIYYFPDQNDGVSFTVAESDADFSHLSGNNGNREAVEFHHLTP 125 (126)
Q Consensus 82 ~~I~c~~~~~~Gv~fveA~~~~~l~~l~~~~~~~~~~~~~~Lvp 125 (126)
++|+||+ +||.|+||+++.+++++... ...+...+++|+|
T Consensus 93 ~~i~c~~---~Gv~fvea~~d~~l~~l~~~-~~p~~~~~~~l~~ 132 (436)
T PLN02481 93 LIVDCTG---EGVVFVEAEANCSIEEIGDI-TKPDPETLGKLVY 132 (436)
T ss_pred EEEEEcC---CCeEEEEEEecCcHHHhccc-cCCCCHHHHHhCC
Confidence 9999998 99999999999999999432 1122345677765
No 6
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=25.25 E-value=97 Score=26.58 Aligned_cols=20 Identities=10% Similarity=0.242 Sum_probs=17.2
Q ss_pred HHHHHHhhhhhcccCeEEec
Q 038434 56 ADSLSLTLLHYLPLAGHIMW 75 (126)
Q Consensus 56 k~SLa~~L~~fyPlAGRl~~ 75 (126)
.+++.++|..|-++++|+..
T Consensus 295 ~e~i~~~L~~F~gl~HR~e~ 314 (448)
T COG0771 295 PEAILEALSSFTGLPHRLEF 314 (448)
T ss_pred HHHHHHHHHhCCCCCcceEE
Confidence 35699999999999999875
No 7
>PLN00211 predicted protein; Provisional
Probab=24.81 E-value=1.2e+02 Score=18.73 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHhhhhhcccCe
Q 038434 51 ILPKLADSLSLTLLHYLPLAG 71 (126)
Q Consensus 51 ~~~~Lk~SLa~~L~~fyPlAG 71 (126)
-++++...||+....|.||.-
T Consensus 28 ylphMtsfLAeIwSVyr~LSq 48 (61)
T PLN00211 28 YLPHMTSFLAEIWSVYRPLSH 48 (61)
T ss_pred ccHHHHHHHHHHHHHhchhhh
Confidence 378899999999999999864
No 8
>PF03007 WES_acyltransf: Wax ester synthase-like Acyl-CoA acyltransferase domain; InterPro: IPR004255 This entry represents the N terminus (approximately 170 residues) of a number of hypothetical plant proteins. O-acyltransferase WSD1 is a bifunctional wax ester synthase/diacylglycerol acyltransferase, which is involved in cuticular wax biosynthesis [].; GO: 0004144 diacylglycerol O-acyltransferase activity
Probab=24.08 E-value=2.2e+02 Score=21.93 Aligned_cols=52 Identities=8% Similarity=0.021 Sum_probs=36.3
Q ss_pred CccEEEEEeCCCCCcCccccchHHHHHHHHHHhhhhhcccCeEEecCCC-CCCcEE
Q 038434 30 PSERVFFYQITDLTFDLFNSVILPKLADSLSLTLLHYLPLAGHIMWPAD-SAKPAI 84 (126)
Q Consensus 30 ~v~~v~fy~~~~~~~~~~~~~~~~~Lk~SLa~~L~~fyPlAGRl~~~~~-~g~~~I 84 (126)
++-.+++|+.+..... ...++.|++.+...+..+..|.-|++..+. .|++.+
T Consensus 19 hv~~~~~~~~~~~~~~---~~~~~~l~~~~~~r~~~~p~fr~rv~~~~~~~~~p~W 71 (263)
T PF03007_consen 19 HVGALAIFDPPTDGAP---PLDVERLRARLEARLARHPRFRQRVVRVPFGLGRPRW 71 (263)
T ss_pred eEEEEEEEEcCCCCCC---cchHHHHHHHHHHhhccCCccccceecCCCCCCCEEE
Confidence 5778889997632221 124788999999999999999999886432 344443
No 9
>PF00380 Ribosomal_S9: Ribosomal protein S9/S16; InterPro: IPR000754 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S9 is one of the proteins from the small ribosomal subunit. It belongs to the S9P family of ribosomal proteins which, on the basis of sequence similarities [, ], groups bacterial; algal chloroplast; cyanelle and archaeal S9 proteins; and mammalian; plant; and yeast mitochondrial ribosomal S9 proteins. These proteins adopt a beta-alpha-beta fold similar to that found in numerous RNA/DNA-binding proteins, as well as in kinases from the GHMP kinase family [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V46_I 3T1H_I 3MR8_I 3F1G_I 3D5C_I 3D5A_I 2WDG_I 3MS0_I 2WDM_I 2J02_I ....
Probab=23.81 E-value=67 Score=22.51 Aligned_cols=20 Identities=10% Similarity=0.122 Sum_probs=17.6
Q ss_pred chHHHHHHHHHHhhhhhccc
Q 038434 50 VILPKLADSLSLTLLHYLPL 69 (126)
Q Consensus 50 ~~~~~Lk~SLa~~L~~fyPl 69 (126)
.....++.++|++|+.|+|-
T Consensus 65 gQa~Air~aiaraL~~~~~~ 84 (121)
T PF00380_consen 65 GQAGAIRLAIARALVKFNPS 84 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHTT
T ss_pred eehHHHHHHHHHHHHHHhHH
Confidence 35788999999999999994
No 10
>COG3215 PilZ Tfp pilus assembly protein PilZ [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=22.91 E-value=47 Score=23.14 Aligned_cols=31 Identities=32% Similarity=0.540 Sum_probs=18.8
Q ss_pred cccCeEEecCCCCCCcEEEecCCCCCceEEEEEEe
Q 038434 67 LPLAGHIMWPADSAKPAIYYFPDQNDGVSFTVAES 101 (126)
Q Consensus 67 yPlAGRl~~~~~~g~~~I~c~~~~~~Gv~fveA~~ 101 (126)
+|+|||+.|...-|-. |-..|-||.|.+-+-
T Consensus 62 l~vagkVaWitP~gt~----sr~~GiGv~f~d~e~ 92 (117)
T COG3215 62 LPVAGKVAWITPVGTQ----SRPAGIGVQFTDGEN 92 (117)
T ss_pred ccccceEEEEccCCCC----CCCCceeeeccCCCc
Confidence 5999999996532322 222246777765553
No 11
>PF02934 GatB_N: GatB/GatE catalytic domain; InterPro: IPR006075 Glutamyl-tRNA(Gln) amidotransferase subunit B (6.3.5 from EC) [] is a microbial enzyme that furnishes a means for formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). The enzyme is composed of three subunits: A (an amidase), B and C. It also exists in eukaryotes as a protein targeted to the mitochondria. ; GO: 0016874 ligase activity; PDB: 3H0M_H 3H0R_K 3H0L_K 3AL0_B 3IP4_B 2DF4_B 2G5I_B 2F2A_B 2G5H_B 2DQN_B ....
Probab=21.57 E-value=1.2e+02 Score=24.54 Aligned_cols=24 Identities=17% Similarity=0.249 Sum_probs=17.4
Q ss_pred CCcEEEecCCCCCceEEEEEEeCCCcc
Q 038434 80 AKPAIYYFPDQNDGVSFTVAESDADFS 106 (126)
Q Consensus 80 g~~~I~c~~~~~~Gv~fveA~~~~~l~ 106 (126)
+.-.||+|- .|+.++|-.++-++.
T Consensus 136 ~~s~vD~NR---aG~PLiEIVTePd~~ 159 (289)
T PF02934_consen 136 DYSLVDYNR---AGVPLIEIVTEPDIR 159 (289)
T ss_dssp TEEEEETTS---TT-EEEEEEE-TTB-
T ss_pred eeeEEcccC---CCccceEEeeCCCCC
Confidence 356799988 999999999987664
No 12
>CHL00079 rps9 ribosomal protein S9
Probab=21.33 E-value=76 Score=22.59 Aligned_cols=19 Identities=16% Similarity=0.034 Sum_probs=16.9
Q ss_pred chHHHHHHHHHHhhhhhcc
Q 038434 50 VILPKLADSLSLTLLHYLP 68 (126)
Q Consensus 50 ~~~~~Lk~SLa~~L~~fyP 68 (126)
.....++.++|++|+.|.|
T Consensus 74 gQa~Air~aIaraLv~~~~ 92 (130)
T CHL00079 74 GQAEAIRLGLARALCKINP 92 (130)
T ss_pred HHHHHHHHHHHHHHHHHCH
Confidence 3578899999999999987
No 13
>PRK02801 primosomal replication protein N; Provisional
Probab=21.06 E-value=1.2e+02 Score=20.26 Aligned_cols=20 Identities=25% Similarity=0.501 Sum_probs=12.8
Q ss_pred cCeEEecCCCCCCcEEEecCCCCCceEE
Q 038434 69 LAGHIMWPADSAKPAIYYFPDQNDGVSF 96 (126)
Q Consensus 69 lAGRl~~~~~~g~~~I~c~~~~~~Gv~f 96 (126)
|.|||. ..+++.+.. .|...
T Consensus 7 L~Grl~-----~dpelr~Tp---~G~~v 26 (101)
T PRK02801 7 LSGTVC-----RTPKRKVSP---SGIPH 26 (101)
T ss_pred EEEEEC-----cCcceEECC---CCCeE
Confidence 679998 346677765 45443
No 14
>PF09369 DUF1998: Domain of unknown function (DUF1998); InterPro: IPR018973 This entry represents a family of DEAD/DEAH-box-containing family of helicases. It includes Hrq1 from Saccharomyces, a putative RecQ helicase []. RecQ helicases are involved in maintaining genomic integrity.
Probab=20.93 E-value=1.2e+02 Score=19.10 Aligned_cols=12 Identities=25% Similarity=0.625 Sum_probs=9.3
Q ss_pred CccEEEEEeCCC
Q 038434 30 PSERVFFYQITD 41 (126)
Q Consensus 30 ~v~~v~fy~~~~ 41 (126)
-...||+|+..+
T Consensus 34 ~~~~i~lyD~~~ 45 (84)
T PF09369_consen 34 GPPRIFLYDTVP 45 (84)
T ss_pred CccEEEEEECCC
Confidence 467899999754
No 15
>PLN00210 40S ribosomal protein S16; Provisional
Probab=20.85 E-value=84 Score=22.69 Aligned_cols=18 Identities=17% Similarity=0.329 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHhhhhhcc
Q 038434 51 ILPKLADSLSLTLLHYLP 68 (126)
Q Consensus 51 ~~~~Lk~SLa~~L~~fyP 68 (126)
....++.++|++|+.|+|
T Consensus 75 Qa~Air~aiaraL~~~~~ 92 (141)
T PLN00210 75 QIYAIRQSIAKALVAYYQ 92 (141)
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 578999999999999986
Done!