Query 038434
Match_columns 126
No_of_seqs 103 out of 1013
Neff 6.7
Searched_HMMs 13730
Date Mon Mar 25 19:08:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038434.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/038434hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2vqei1 d.14.1.1 (I:2-128) Rib 24.0 21 0.0016 22.5 2.3 19 50-68 71-89 (127)
2 d2ftsa1 b.85.6.1 (A:654-736) G 21.9 44 0.0032 19.0 3.3 23 71-93 23-45 (83)
3 d2gy9i1 d.14.1.1 (I:4-129) Rib 16.3 40 0.0029 21.1 2.3 19 51-69 71-89 (126)
4 d1zq1c3 d.128.1.5 (C:5-276,C:4 15.5 52 0.0038 24.0 3.1 22 82-106 172-193 (321)
5 d1vq0a1 d.193.1.1 (A:1-230) He 13.8 76 0.0055 21.4 3.5 57 52-111 33-89 (230)
6 d2f2ab2 d.128.1.5 (B:4-293) As 13.8 94 0.0068 22.2 4.0 22 82-106 134-155 (290)
7 d2d6fc3 d.128.1.5 (C:1-270,C:3 12.3 65 0.0047 23.4 2.8 21 83-106 172-192 (319)
8 d1bvsa3 b.40.4.2 (A:1-63) DNA 12.0 62 0.0045 17.4 2.1 20 68-88 4-23 (63)
9 d1vzya1 d.193.1.1 (A:1-233) He 11.9 86 0.0063 21.1 3.3 56 53-111 36-91 (233)
10 d1hh2p4 d.202.1.1 (P:1-126) Tr 11.4 1.7E+02 0.012 17.7 4.5 38 49-86 21-60 (126)
No 1
>d2vqei1 d.14.1.1 (I:2-128) Ribosomal protein S9 {Thermus thermophilus [TaxId: 274]}
Probab=24.01 E-value=21 Score=22.54 Aligned_cols=19 Identities=16% Similarity=0.300 Sum_probs=16.9
Q ss_pred chHHHHHHHHHHhhhhhcc
Q 038434 50 VILPKLADSLSLTLLHYLP 68 (126)
Q Consensus 50 ~~~~~Lk~SLa~~L~~fyP 68 (126)
.....++.++|++|+.|.|
T Consensus 71 gQa~Air~aIaRaL~~~~~ 89 (127)
T d2vqei1 71 GQIDAIKLGIARALVQYNP 89 (127)
T ss_dssp HHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHHHHHHHCH
Confidence 3588999999999999987
No 2
>d2ftsa1 b.85.6.1 (A:654-736) Gephyrin, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=21.94 E-value=44 Score=19.03 Aligned_cols=23 Identities=13% Similarity=0.133 Sum_probs=14.0
Q ss_pred eEEecCCCCCCcEEEecCCCCCc
Q 038434 71 GHIMWPADSAKPAIYYFPDQNDG 93 (126)
Q Consensus 71 GRl~~~~~~g~~~I~c~~~~~~G 93 (126)
|||.+..++|++++.+...|+.|
T Consensus 23 a~l~~~~~~g~~~a~~~~~Q~S~ 45 (83)
T d2ftsa1 23 CILTWHHQEPLPWAQSTGNQMSS 45 (83)
T ss_dssp EEEECCTTCSSCEEEECCSCSSS
T ss_pred EEEEEeCCCCeEEEEECCCCccH
Confidence 45665555577888876644433
No 3
>d2gy9i1 d.14.1.1 (I:4-129) Ribosomal protein S9 {Escherichia coli [TaxId: 562]}
Probab=16.26 E-value=40 Score=21.12 Aligned_cols=19 Identities=11% Similarity=0.160 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHhhhhhccc
Q 038434 51 ILPKLADSLSLTLLHYLPL 69 (126)
Q Consensus 51 ~~~~Lk~SLa~~L~~fyPl 69 (126)
..+.++.++|++|+.|.|-
T Consensus 71 Qa~Air~aIaRaLv~~~~~ 89 (126)
T d2gy9i1 71 QAGAIRHGITRALMEYDES 89 (126)
T ss_dssp HHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHHHHHhCHH
Confidence 5889999999999999764
No 4
>d1zq1c3 d.128.1.5 (C:5-276,C:408-456) Glutamyl-tRNA(Gln) amidotransferase subunit E, GatE {Pyrococcus abyssi [TaxId: 29292]}
Probab=15.50 E-value=52 Score=23.95 Aligned_cols=22 Identities=9% Similarity=0.030 Sum_probs=17.8
Q ss_pred cEEEecCCCCCceEEEEEEeCCCcc
Q 038434 82 PAIYYFPDQNDGVSFTVAESDADFS 106 (126)
Q Consensus 82 ~~I~c~~~~~~Gv~fveA~~~~~l~ 106 (126)
..+|.|- .||.++|-.++-++.
T Consensus 172 ~lvD~NR---aGvPLiEIVTePd~~ 193 (321)
T d1zq1c3 172 VIYRLDR---LGIPLIEISTTPDIH 193 (321)
T ss_dssp EEEESTT---TTCEEEEEECCTTBC
T ss_pred eEEeecc---cCcceEEEecccccc
Confidence 4578888 999999999876654
No 5
>d1vq0a1 d.193.1.1 (A:1-230) Heat shock protein 33, Hsp33 {Thermotoga maritima [TaxId: 2336]}
Probab=13.84 E-value=76 Score=21.43 Aligned_cols=57 Identities=7% Similarity=-0.127 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhhhhhcccCeEEecCCCCCCcEEEecCCCCCceEEEEEEeCCCcccccCC
Q 038434 52 LPKLADSLSLTLLHYLPLAGHIMWPADSAKPAIYYFPDQNDGVSFTVAESDADFSHLSGN 111 (126)
Q Consensus 52 ~~~Lk~SLa~~L~~fyPlAGRl~~~~~~g~~~I~c~~~~~~Gv~fveA~~~~~l~~l~~~ 111 (126)
-+.....|+++|+.---||+.++. .||+.|....++.-+-.++++..+..+.-++.+
T Consensus 33 ~~~~~~lLg~~l~~~~Ll~s~lK~---~~ri~lqi~~~g~l~~lvae~~~~g~vRg~~~~ 89 (230)
T d1vq0a1 33 SYLATVVLGRALIGAALVTPWLAE---KERWTLDIEGNGPIRRVVAQSTSEFTVRGYVAN 89 (230)
T ss_dssp CHHHHHHHHHHHHHHHHHGGGCCT---TCEEEEEEEESSTTCEEEEEEETTSEEEEEESC
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCc---CCEEEEEEEcCCCccEEEEEEeCCCcEEEEecC
Confidence 345667889999988899988773 377665554311234555555556677776654
No 6
>d2f2ab2 d.128.1.5 (B:4-293) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, GatB, N-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Probab=13.78 E-value=94 Score=22.22 Aligned_cols=22 Identities=14% Similarity=0.167 Sum_probs=17.9
Q ss_pred cEEEecCCCCCceEEEEEEeCCCcc
Q 038434 82 PAIYYFPDQNDGVSFTVAESDADFS 106 (126)
Q Consensus 82 ~~I~c~~~~~~Gv~fveA~~~~~l~ 106 (126)
-.|+.|- .|+.++|-.++-++.
T Consensus 134 slvD~NR---aGvPLiEIVTePd~~ 155 (290)
T d2f2ab2 134 SLVDLNR---QGTPLIEIVSEPDIR 155 (290)
T ss_dssp EEEECSS---TTCEEEEEEECTTBC
T ss_pred cEEeecc---CCCceeeeeccCCcC
Confidence 3588888 999999999986654
No 7
>d2d6fc3 d.128.1.5 (C:1-270,C:396-444) Glutamyl-tRNA(Gln) amidotransferase subunit E, GatE {Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=12.27 E-value=65 Score=23.36 Aligned_cols=21 Identities=14% Similarity=0.161 Sum_probs=17.1
Q ss_pred EEEecCCCCCceEEEEEEeCCCcc
Q 038434 83 AIYYFPDQNDGVSFTVAESDADFS 106 (126)
Q Consensus 83 ~I~c~~~~~~Gv~fveA~~~~~l~ 106 (126)
.||.|- .||.++|-.++-++.
T Consensus 172 ~vD~NR---aGvPLiEIVTePd~~ 192 (319)
T d2d6fc3 172 VFRLDR---LGIPLVEITTDPSMS 192 (319)
T ss_dssp EEETTS---TTCEEEEEECCSCCC
T ss_pred Eecccc---cCceeEEEEeecccC
Confidence 478887 999999999876554
No 8
>d1bvsa3 b.40.4.2 (A:1-63) DNA helicase RuvA subunit, N-terminal domain {Mycobacterium leprae [TaxId: 1769]}
Probab=12.04 E-value=62 Score=17.39 Aligned_cols=20 Identities=15% Similarity=0.079 Sum_probs=15.0
Q ss_pred ccCeEEecCCCCCCcEEEecC
Q 038434 68 PLAGHIMWPADSAKPAIYYFP 88 (126)
Q Consensus 68 PlAGRl~~~~~~g~~~I~c~~ 88 (126)
-+.|++.... .+.+.|+||+
T Consensus 4 ~i~G~i~~~~-~~~ivi~v~G 23 (63)
T d1bvsa3 4 SVRGEVLEVA-LDHAVIEAAG 23 (63)
T ss_dssp EECEEEEEEC-SSCEEEEETT
T ss_pred EEEEEEEEEC-CCEEEEEECC
Confidence 4678888654 3789999955
No 9
>d1vzya1 d.193.1.1 (A:1-233) Heat shock protein 33, Hsp33 {Bacillus subtilis [TaxId: 1423]}
Probab=11.85 E-value=86 Score=21.13 Aligned_cols=56 Identities=16% Similarity=0.113 Sum_probs=37.0
Q ss_pred HHHHHHHHHhhhhhcccCeEEecCCCCCCcEEEecCCCCCceEEEEEEeCCCcccccCC
Q 038434 53 PKLADSLSLTLLHYLPLAGHIMWPADSAKPAIYYFPDQNDGVSFTVAESDADFSHLSGN 111 (126)
Q Consensus 53 ~~Lk~SLa~~L~~fyPlAGRl~~~~~~g~~~I~c~~~~~~Gv~fveA~~~~~l~~l~~~ 111 (126)
+.....|+++|+.---||+.++. .|++.|....+..-+-.++++..+..+.-...+
T Consensus 36 ~~~~~lLg~~l~a~~LL~~~lK~---~g~~tlq~~g~Gpi~~lv~e~~~~g~vRg~~~~ 91 (233)
T d1vzya1 36 PTASAALGRTMTASLMLGAMLKG---DDKLTVKIEGGGPIGAIVADANAKGEVRAYVSN 91 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCT---TCEEEEEEECSSTTCEEEEEEETTSEEEEEESC
T ss_pred HHHHHHHHHHHHHHHHHHhccCC---CCEEEEEEEcCCCcceEEEEecCCCceEEEEEC
Confidence 44567889999988888888773 377766665411235566666666777766554
No 10
>d1hh2p4 d.202.1.1 (P:1-126) Transcription factor NusA, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=11.38 E-value=1.7e+02 Score=17.70 Aligned_cols=38 Identities=11% Similarity=0.216 Sum_probs=27.2
Q ss_pred cchHHHHHHHHHHhhhhhcccCe--EEecCCCCCCcEEEe
Q 038434 49 SVILPKLADSLSLTLLHYLPLAG--HIMWPADSAKPAIYY 86 (126)
Q Consensus 49 ~~~~~~Lk~SLa~~L~~fyPlAG--Rl~~~~~~g~~~I~c 86 (126)
+.+++.|++||..|.-..|.-.- ++..+.++|.+.|..
T Consensus 21 e~v~~aie~al~~A~kk~~g~~~~~~v~id~~tG~i~v~~ 60 (126)
T d1hh2p4 21 EEVIPILEKALVSAYRKNFGNSKNVEVVIDRNTGNIKVYQ 60 (126)
T ss_dssp HHHHHHHHHHHHHHHHTTTCSSSCEEEECCSTTCCCEEEE
T ss_pred HHHHHHHHHHHHHHHHHhcCCccceEEEEecCCCcEEEEE
Confidence 46899999999999998886432 334455677776643
Done!