Query 038435
Match_columns 118
No_of_seqs 113 out of 250
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 11:02:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038435.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038435hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02190 cellulose synthase-li 100.0 3E-35 6.6E-40 259.2 10.4 111 1-114 627-755 (756)
2 PLN02893 Cellulose synthase-li 100.0 4.9E-34 1.1E-38 251.7 10.9 117 1-117 616-732 (734)
3 PF03552 Cellulose_synt: Cellu 100.0 1.1E-33 2.4E-38 248.6 9.3 110 1-115 594-705 (720)
4 PLN02638 cellulose synthase A 100.0 6.9E-33 1.5E-37 250.6 9.9 109 1-115 948-1058(1079)
5 PLN02195 cellulose synthase A 100.0 1.1E-32 2.3E-37 247.7 9.8 108 1-115 845-954 (977)
6 PLN02189 cellulose synthase 100.0 1.7E-32 3.7E-37 247.4 10.0 108 1-115 910-1019(1040)
7 PLN02400 cellulose synthase 100.0 8.7E-32 1.9E-36 243.6 10.0 109 1-115 953-1063(1085)
8 PLN02436 cellulose synthase A 100.0 5.9E-31 1.3E-35 237.9 9.7 108 1-115 964-1073(1094)
9 PLN02248 cellulose synthase-li 100.0 1.2E-30 2.5E-35 236.6 9.3 111 1-115 1005-1117(1135)
10 PLN02915 cellulose synthase A 100.0 3.2E-30 6.9E-35 232.9 10.0 110 1-115 912-1023(1044)
11 PRK11498 bcsA cellulose syntha 97.4 0.00019 4.1E-09 65.7 4.8 74 2-87 600-673 (852)
12 TIGR03030 CelA cellulose synth 96.5 0.0081 1.8E-07 53.7 7.2 79 2-94 489-571 (713)
13 TIGR00394 lac_pts_IIC phosphot 63.3 18 0.00039 30.8 5.3 59 28-86 319-402 (412)
14 COG0798 ACR3 Arsenite efflux p 49.3 48 0.001 28.0 5.5 50 60-109 137-186 (342)
15 PF04144 SCAMP: SCAMP family; 46.1 79 0.0017 23.7 5.8 52 38-91 44-97 (177)
16 PRK10297 PTS system N,N'-diace 43.5 25 0.00055 30.3 3.1 28 60-87 404-431 (452)
17 TIGR00359 cello_pts_IIC phosph 42.8 26 0.00057 29.9 3.1 27 60-86 388-414 (423)
18 TIGR00410 lacE PTS system, lac 42.8 26 0.00057 29.9 3.1 27 60-86 388-414 (423)
19 PF06210 DUF1003: Protein of u 42.2 47 0.001 23.3 3.8 41 60-103 2-43 (108)
20 COG1455 CelB Phosphotransferas 42.0 58 0.0013 28.3 5.0 27 60-86 389-415 (432)
21 PF06645 SPC12: Microsomal sig 41.5 17 0.00037 23.9 1.4 44 41-84 17-60 (76)
22 PF05106 Phage_holin_3: Phage 36.7 60 0.0013 22.3 3.6 41 46-86 26-67 (100)
23 KOG2290 Rhomboid family protei 35.1 53 0.0011 29.5 3.8 52 60-114 565-620 (652)
24 PF01594 UPF0118: Domain of un 34.5 1.4E+02 0.003 23.4 5.8 39 64-104 20-58 (327)
25 PRK09592 celD cellobiose phosp 29.4 57 0.0012 28.0 3.1 27 60-86 410-436 (449)
26 PF06638 Strabismus: Strabismu 26.6 68 0.0015 28.5 3.0 88 26-115 84-180 (505)
27 PF11947 DUF3464: Protein of u 25.8 49 0.0011 24.8 1.8 29 36-64 94-125 (153)
28 COG4858 Uncharacterized membra 25.5 3.5E+02 0.0075 21.5 8.2 69 21-100 91-163 (226)
29 COG3366 Uncharacterized protei 24.8 2.1E+02 0.0045 23.9 5.5 54 38-91 221-285 (311)
30 PRK09664 tryptophan permease T 22.9 4.2E+02 0.009 22.8 7.1 64 28-104 324-391 (415)
31 KOG1314 DHHC-type Zn-finger pr 22.8 2.9E+02 0.0064 23.9 6.0 37 59-97 42-78 (414)
32 KOG3030 Lipid phosphate phosph 20.2 3E+02 0.0065 22.9 5.5 53 31-84 209-266 (317)
No 1
>PLN02190 cellulose synthase-like protein
Probab=100.00 E-value=3e-35 Score=259.24 Aligned_cols=111 Identities=22% Similarity=0.400 Sum_probs=101.6
Q ss_pred CCCCceeeecCCCC-------------hhhhhhhccceeEeeccceehhHHHHHHHHHHHHHHHhhhheeee-----CCc
Q 038435 1 MKQPSFSPTNKLSD-------------DEQVKLHKMGKFNFQTSTKFLAPLATLVMLNMIAFSGGIARMVIS-----GGA 62 (118)
Q Consensus 1 ls~~~F~vT~K~~d-------------~~~~~~y~~~~f~F~~~S~lfip~ttl~llNl~a~v~g~~~~~~~-----~~~ 62 (118)
+||++|+||+|++| ||++++||+|+|||+ |||||+|+||++++|++|+++|+++++.. ++|
T Consensus 627 ~s~~~F~vTsK~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~-~S~lfiP~tti~~~Nl~a~~~g~~~~~~~~~s~~~~~ 705 (756)
T PLN02190 627 ISKTVFIVTKKTMPETKSGSGSGPSQGEDDGPNSDSGKFEFD-GSLYFLPGTFIVLVNLAALAGFLVGLQRSSYSHGGGG 705 (756)
T ss_pred cccceEEEeeccccccccccccccccccccchhhhcceeEec-ceehHHHHHHHHHHHHHHHHHHHHHHhhhhhccCccc
Confidence 58999999999865 566789999999999 99999999999999999999999987642 456
Q ss_pred hhhhHHHHHHHHHHHHHhHhhhhhhhccCCCCCcchhHHHHHHHHHHHHHHh
Q 038435 63 NELLGQVILSFYILLESYPIIEGMAWRKDKGQVPASVGLLSFVLSIIFLLLG 114 (118)
Q Consensus 63 ~~~~~ql~~~~~vv~~~~Pf~~Gl~~Rkdkg~iP~~v~~~S~~la~~f~ll~ 114 (118)
+. ++|++||+|+|+|+|||||||| ||||||||+|++++|++|+.+|++++
T Consensus 706 ~~-l~q~~~~~~vv~~~~P~~~gl~-~kdkg~iP~s~~~~s~~l~~~f~~~~ 755 (756)
T PLN02190 706 SG-LAEACGCILVVMLFLPFLKGLF-EKGKYGIPLSTLSKAAFLAVLFVVFS 755 (756)
T ss_pred cc-HHHHHHHHHHHHHHHHHHHHHh-cCCCCCCChhHHHHHHHHHHHHHhcc
Confidence 55 5999999999999999999999 99999999999999999999999876
No 2
>PLN02893 Cellulose synthase-like protein
Probab=100.00 E-value=4.9e-34 Score=251.65 Aligned_cols=117 Identities=31% Similarity=0.524 Sum_probs=112.2
Q ss_pred CCCCceeeecCCCChhhhhhhccceeEeeccceehhHHHHHHHHHHHHHHHhhhheeeeCCchhhhHHHHHHHHHHHHHh
Q 038435 1 MKQPSFSPTNKLSDDEQVKLHKMGKFNFQTSTKFLAPLATLVMLNMIAFSGGIARMVISGGANELLGQVILSFYILLESY 80 (118)
Q Consensus 1 ls~~~F~vT~K~~d~~~~~~y~~~~f~F~~~S~lfip~ttl~llNl~a~v~g~~~~~~~~~~~~~~~ql~~~~~vv~~~~ 80 (118)
+|+++|+||+|+.|+|+++||++|+|||+.|||+|+|++|++++|++|+++|++|++.+++|+.+++|+++|+|+|+|+|
T Consensus 616 ~s~~~F~VT~K~~~~~~~~~y~~~~f~f~~~spl~ip~ttl~llNl~a~v~Gi~~~~~~~~~~~~~~~~~~~~~~v~~~~ 695 (734)
T PLN02893 616 ISTFGFNVTSKVVDEEQSKRYEQGIFEFGVSSPMFLPLTTAAIINLVSFLWGIAQIFRQRNLEGLFLQMFLAGFAVVNCW 695 (734)
T ss_pred ccCCceeecCCCcccccccccccceeeecccchhHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999779999999999999999999999999877789999999999999999999
Q ss_pred HhhhhhhhccCCCCCcchhHHHHHHHHHHHHHHhhhc
Q 038435 81 PIIEGMAWRKDKGQVPASVGLLSFVLSIIFLLLGSVV 117 (118)
Q Consensus 81 Pf~~Gl~~Rkdkg~iP~~v~~~S~~la~~f~ll~~~~ 117 (118)
||||||++||||||||+||++||++|+.+++++.++.
T Consensus 696 P~~~gl~~r~dkg~~P~~v~~~s~~l~~~~~~~~~~~ 732 (734)
T PLN02893 696 PIYEAMVLRTDDGKLPVKITLISIVLAWALYLASSFA 732 (734)
T ss_pred HHHHHHhccCCCCCCCccHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999988875
No 3
>PF03552 Cellulose_synt: Cellulose synthase; InterPro: IPR005150 Cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues, is the major component of wood and thus paper, and is synthesized by plants, most algae, some bacteria and fungi, and even some animals. The genes that synthesize cellulose in higher plants differ greatly from the well-characterised genes found in Acetobacter and Agrobacterium spp. More correctly designated as "cellulose synthase catalytic subunits", plant cellulose synthase (CesA) proteins are integral membrane proteins, approximately 1,000 amino acids in length. There are a number of highly conserved residues, including several motifs shown to be necessary for processive glycosyltransferase activity [].; GO: 0016760 cellulose synthase (UDP-forming) activity, 0030244 cellulose biosynthetic process, 0016020 membrane
Probab=100.00 E-value=1.1e-33 Score=248.63 Aligned_cols=110 Identities=39% Similarity=0.624 Sum_probs=102.4
Q ss_pred CCCCceeeecCCCChhhhhhhccceeEeeccceehhHHHHHHHHHHHHHHHhhhheeee--CCchhhhHHHHHHHHHHHH
Q 038435 1 MKQPSFSPTNKLSDDEQVKLHKMGKFNFQTSTKFLAPLATLVMLNMIAFSGGIARMVIS--GGANELLGQVILSFYILLE 78 (118)
Q Consensus 1 ls~~~F~vT~K~~d~~~~~~y~~~~f~F~~~S~lfip~ttl~llNl~a~v~g~~~~~~~--~~~~~~~~ql~~~~~vv~~ 78 (118)
+||++|+||+|+.|||+.+ | .|+|+|+ ||+||+|+||++++|++|+++|++|++++ ++|+++++|++||+|||+|
T Consensus 594 ~s~t~F~VTsK~~dde~~~-~-~ely~f~-wS~LfiP~tTllilNLva~v~Gi~r~i~~g~~~~g~l~g~lf~~~wVvv~ 670 (720)
T PF03552_consen 594 GSETSFTVTSKVSDDEDDK-Y-AELYIFK-WSPLFIPPTTLLILNLVAFVVGISRAINSGYGSWGPLLGQLFFSFWVVVH 670 (720)
T ss_pred CCccceeeccccccccccc-c-ccccccc-ccchhhHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHH
Confidence 5899999999999866554 4 5799999 99999999999999999999999999875 5799999999999999999
Q ss_pred HhHhhhhhhhccCCCCCcchhHHHHHHHHHHHHHHhh
Q 038435 79 SYPIIEGMAWRKDKGQVPASVGLLSFVLSIIFLLLGS 115 (118)
Q Consensus 79 ~~Pf~~Gl~~Rkdkg~iP~~v~~~S~~la~~f~ll~~ 115 (118)
+|||+||||+||| |+|+++++||+++|++|+++|.
T Consensus 671 lyPf~kGL~~R~~--r~P~~v~v~S~lla~i~~llwv 705 (720)
T PF03552_consen 671 LYPFLKGLFGRKD--RIPTSVIVWSVLLASIFSLLWV 705 (720)
T ss_pred hhHHHHhhhcccC--CcceeehHHHHHHHHHHHHHhe
Confidence 9999999999988 8999999999999999999995
No 4
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=99.98 E-value=6.9e-33 Score=250.60 Aligned_cols=109 Identities=28% Similarity=0.521 Sum_probs=102.2
Q ss_pred CCCCceeeecCCCChhhhhhhccceeEeeccceehhHHHHHHHHHHHHHHHhhhheeeeC--CchhhhHHHHHHHHHHHH
Q 038435 1 MKQPSFSPTNKLSDDEQVKLHKMGKFNFQTSTKFLAPLATLVMLNMIAFSGGIARMVISG--GANELLGQVILSFYILLE 78 (118)
Q Consensus 1 ls~~~F~vT~K~~d~~~~~~y~~~~f~F~~~S~lfip~ttl~llNl~a~v~g~~~~~~~~--~~~~~~~ql~~~~~vv~~ 78 (118)
+|+++|+||+|+.|+|+. ++|+|+|+ |||||+|+||++++|++|+++|++|+++++ +|+++++|++||+|||+|
T Consensus 948 gs~~~F~VTsK~~d~~~~---~~ely~f~-wS~l~iP~ttl~iiNlvaiv~g~~~~~~~g~~~~~~~~~~~~~~~wvv~~ 1023 (1079)
T PLN02638 948 GIDTNFTVTSKASDEDGD---FAELYMFK-WTTLLIPPTTLLIINLVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIVH 1023 (1079)
T ss_pred cCcccceecccccccccc---ccceeEec-ceehhHHHHHHHHHHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHH
Confidence 589999999999876654 28999999 999999999999999999999999998754 799999999999999999
Q ss_pred HhHhhhhhhhccCCCCCcchhHHHHHHHHHHHHHHhh
Q 038435 79 SYPIIEGMAWRKDKGQVPASVGLLSFVLSIIFLLLGS 115 (118)
Q Consensus 79 ~~Pf~~Gl~~Rkdkg~iP~~v~~~S~~la~~f~ll~~ 115 (118)
+|||+||||+||+ |+|+++++||++++++|+++|.
T Consensus 1024 l~Pf~kgl~gR~~--r~P~~v~v~s~ll~~~~~l~~v 1058 (1079)
T PLN02638 1024 LYPFLKGLMGRQN--RTPTIVVVWSILLASIFSLLWV 1058 (1079)
T ss_pred HHHHHHHHhccCC--CCCeeehHHHHHHHHHHHHHHh
Confidence 9999999999995 9999999999999999999995
No 5
>PLN02195 cellulose synthase A
Probab=99.98 E-value=1.1e-32 Score=247.66 Aligned_cols=108 Identities=26% Similarity=0.502 Sum_probs=100.7
Q ss_pred CCCCceeeecCCCChhhhhhhccceeEeeccceehhHHHHHHHHHHHHHHHhhhheeeeC--CchhhhHHHHHHHHHHHH
Q 038435 1 MKQPSFSPTNKLSDDEQVKLHKMGKFNFQTSTKFLAPLATLVMLNMIAFSGGIARMVISG--GANELLGQVILSFYILLE 78 (118)
Q Consensus 1 ls~~~F~vT~K~~d~~~~~~y~~~~f~F~~~S~lfip~ttl~llNl~a~v~g~~~~~~~~--~~~~~~~ql~~~~~vv~~ 78 (118)
+|+++|+||+|+.|||+. .|+|+|+ |||||+|+||++++|++|+++|++|+++++ +|+++++|++||+|+|+|
T Consensus 845 gs~~~F~VTsK~~dd~~~----~~~Y~f~-~S~l~iP~ttl~ilNlvaiv~g~~~~i~~~~~~~g~l~~~~~~~~wvv~~ 919 (977)
T PLN02195 845 GLDTNFTVTAKAADDTEF----GELYMVK-WTTLLIPPTSLLIINLVGVVAGFSDALNKGYEAWGPLFGKVFFAFWVILH 919 (977)
T ss_pred CCCccceeccccccccch----hcceecc-ceehhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHHH
Confidence 489999999999876533 5888999 999999999999999999999999998754 899999999999999999
Q ss_pred HhHhhhhhhhccCCCCCcchhHHHHHHHHHHHHHHhh
Q 038435 79 SYPIIEGMAWRKDKGQVPASVGLLSFVLSIIFLLLGS 115 (118)
Q Consensus 79 ~~Pf~~Gl~~Rkdkg~iP~~v~~~S~~la~~f~ll~~ 115 (118)
+|||+||||+||+ |+|+++++||++++++|+++|.
T Consensus 920 ~~Pf~kgl~gR~~--r~P~~v~v~s~ll~~~~~l~~v 954 (977)
T PLN02195 920 LYPFLKGLMGRQN--RTPTIVVLWSVLLASVFSLVWV 954 (977)
T ss_pred HHHHHHHHhccCC--CCCeeehHHHHHHHHHHHHHHe
Confidence 9999999999995 9999999999999999999995
No 6
>PLN02189 cellulose synthase
Probab=99.97 E-value=1.7e-32 Score=247.43 Aligned_cols=108 Identities=28% Similarity=0.554 Sum_probs=101.8
Q ss_pred CCCCceeeecCCCChhhhhhhccceeEeeccceehhHHHHHHHHHHHHHHHhhhheeeeC--CchhhhHHHHHHHHHHHH
Q 038435 1 MKQPSFSPTNKLSDDEQVKLHKMGKFNFQTSTKFLAPLATLVMLNMIAFSGGIARMVISG--GANELLGQVILSFYILLE 78 (118)
Q Consensus 1 ls~~~F~vT~K~~d~~~~~~y~~~~f~F~~~S~lfip~ttl~llNl~a~v~g~~~~~~~~--~~~~~~~ql~~~~~vv~~ 78 (118)
+|+++|+||+|+.|||+. +|+|+|+ |||||+|+||++++|++|+++|++|+++++ +|+++++|++||+|+|+|
T Consensus 910 gs~~~F~VTsK~~~d~~~----~~ly~f~-~s~l~iP~ttl~i~Nlvaiv~g~~~~~~~~~~~~~~~~~~~~~~~wvv~~ 984 (1040)
T PLN02189 910 GIDTNFTVTSKATDDDEF----GELYAFK-WTTLLIPPTTLLIINIVGVVAGISDAINNGYQSWGPLFGKLFFAFWVIVH 984 (1040)
T ss_pred cCcccceecccccccccc----ccceeec-ceeHhHHHHHHHHHHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHH
Confidence 489999999999887654 6999999 999999999999999999999999998754 799999999999999999
Q ss_pred HhHhhhhhhhccCCCCCcchhHHHHHHHHHHHHHHhh
Q 038435 79 SYPIIEGMAWRKDKGQVPASVGLLSFVLSIIFLLLGS 115 (118)
Q Consensus 79 ~~Pf~~Gl~~Rkdkg~iP~~v~~~S~~la~~f~ll~~ 115 (118)
+|||+||||+||+ |+|+++++||++++++|+++|.
T Consensus 985 ~~Pf~kgl~gR~~--r~P~~v~v~s~ll~~~~~l~~v 1019 (1040)
T PLN02189 985 LYPFLKGLMGRQN--RTPTIVVIWSVLLASIFSLLWV 1019 (1040)
T ss_pred HHHHHHHHhccCC--CCCeeehHHHHHHHHHHHHHHh
Confidence 9999999999995 9999999999999999999995
No 7
>PLN02400 cellulose synthase
Probab=99.97 E-value=8.7e-32 Score=243.57 Aligned_cols=109 Identities=26% Similarity=0.474 Sum_probs=101.6
Q ss_pred CCCCceeeecCCCChhhhhhhccceeEeeccceehhHHHHHHHHHHHHHHHhhhheeeeC--CchhhhHHHHHHHHHHHH
Q 038435 1 MKQPSFSPTNKLSDDEQVKLHKMGKFNFQTSTKFLAPLATLVMLNMIAFSGGIARMVISG--GANELLGQVILSFYILLE 78 (118)
Q Consensus 1 ls~~~F~vT~K~~d~~~~~~y~~~~f~F~~~S~lfip~ttl~llNl~a~v~g~~~~~~~~--~~~~~~~ql~~~~~vv~~ 78 (118)
+|+++|+||+|+.|+|+. ++|+|+|+ ||+||+|+||++++|++|+++|++|+++++ +|+++++|++||+|||+|
T Consensus 953 g~~~~F~VTsK~~d~~~~---~~ely~f~-~s~L~iP~ttl~llNlvaiv~Gv~~~i~~g~~~~g~l~~~~~~~~wvvv~ 1028 (1085)
T PLN02400 953 GIDTNFTVTSKASDEDGD---FAELYVFK-WTSLLIPPTTVLLVNLVGIVAGVSYAINSGYQSWGPLFGKLFFAIWVIAH 1028 (1085)
T ss_pred CCcccceecCCccccccc---ccceeeec-ccchhHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHH
Confidence 489999999999876543 28999999 999999999999999999999999998754 899999999999999999
Q ss_pred HhHhhhhhhhccCCCCCcchhHHHHHHHHHHHHHHhh
Q 038435 79 SYPIIEGMAWRKDKGQVPASVGLLSFVLSIIFLLLGS 115 (118)
Q Consensus 79 ~~Pf~~Gl~~Rkdkg~iP~~v~~~S~~la~~f~ll~~ 115 (118)
+|||+||||+|+ ||+|++|++||++++++|+++|.
T Consensus 1029 l~Pf~kgL~gR~--~r~P~~v~~~s~lla~~~~l~~v 1063 (1085)
T PLN02400 1029 LYPFLKGLLGRQ--NRTPTIVIVWSILLASIFSLLWV 1063 (1085)
T ss_pred HHHHHHHHhccC--CCCceeHHHHHHHHHHHHHHHhe
Confidence 999999999988 59999999999999999999995
No 8
>PLN02436 cellulose synthase A
Probab=99.97 E-value=5.9e-31 Score=237.92 Aligned_cols=108 Identities=24% Similarity=0.485 Sum_probs=99.0
Q ss_pred CCCCceeeecCCCChhhhhhhccceeEeeccceehhHHHHHHHHHHHHHHHhhhheeeeC--CchhhhHHHHHHHHHHHH
Q 038435 1 MKQPSFSPTNKLSDDEQVKLHKMGKFNFQTSTKFLAPLATLVMLNMIAFSGGIARMVISG--GANELLGQVILSFYILLE 78 (118)
Q Consensus 1 ls~~~F~vT~K~~d~~~~~~y~~~~f~F~~~S~lfip~ttl~llNl~a~v~g~~~~~~~~--~~~~~~~ql~~~~~vv~~ 78 (118)
+|+++|+||+|+.|++.. +|+|+|+ |||||+|+||++++|++|+++|++|+++++ +|+++++|++||+|||+|
T Consensus 964 gs~~~F~VTsK~~d~~~~----a~ly~f~-~S~L~iP~tti~ilNlvaiv~Gi~~~i~~g~~~~g~l~~~l~~~~wvvv~ 1038 (1094)
T PLN02436 964 GVNTNFTVTSKAADDGEF----SELYLFK-WTSLLIPPTTLLIINIIGVIVGVSDAINNGYDSWGPLFGRLFFALWVIVH 1038 (1094)
T ss_pred cCcccceecccccccccc----cceeeec-ceeHhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHH
Confidence 489999999999875522 5888999 999999999999999999999999998754 899999999999999999
Q ss_pred HhHhhhhhhhccCCCCCcchhHHHHHHHHHHHHHHhh
Q 038435 79 SYPIIEGMAWRKDKGQVPASVGLLSFVLSIIFLLLGS 115 (118)
Q Consensus 79 ~~Pf~~Gl~~Rkdkg~iP~~v~~~S~~la~~f~ll~~ 115 (118)
+||||||||+| ++|+|+++++||++++++++++|.
T Consensus 1039 lyPf~kgL~gr--~~r~P~~v~v~s~lla~~~~l~~v 1073 (1094)
T PLN02436 1039 LYPFLKGLLGK--QDRMPTIILVWSILLASILTLLWV 1073 (1094)
T ss_pred HHHHHHHHhcc--CCCCCeeehHHHHHHHHHHHHHHe
Confidence 99999999955 449999999999999999999995
No 9
>PLN02248 cellulose synthase-like protein
Probab=99.97 E-value=1.2e-30 Score=236.58 Aligned_cols=111 Identities=31% Similarity=0.439 Sum_probs=105.0
Q ss_pred CCCCceeeecCCCChhhhhhhccceeEeeccceehhHHHHHHHHHHHHHHHhhhheeee--CCchhhhHHHHHHHHHHHH
Q 038435 1 MKQPSFSPTNKLSDDEQVKLHKMGKFNFQTSTKFLAPLATLVMLNMIAFSGGIARMVIS--GGANELLGQVILSFYILLE 78 (118)
Q Consensus 1 ls~~~F~vT~K~~d~~~~~~y~~~~f~F~~~S~lfip~ttl~llNl~a~v~g~~~~~~~--~~~~~~~~ql~~~~~vv~~ 78 (118)
+++++|+||+|+.++|+.++| +|+|+|+ |||+|+|++|++++|++|+++|++|++++ ++|+++++|++||+|+++|
T Consensus 1005 gs~~~F~VTsK~~~~d~~~~~-a~ly~f~-wS~L~iP~ttl~llNLvAivvGv~R~i~g~~~~~~~l~g~l~~s~Wvv~~ 1082 (1135)
T PLN02248 1005 GIEISFTLTSKSAGDDEDDEF-ADLYIVK-WTSLMIPPITIMMVNLIAIAVGVSRTIYSEIPQWSKLLGGVFFSFWVLAH 1082 (1135)
T ss_pred CccccceeCCccccccccccc-chheecC-cchHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHH
Confidence 479999999999988888899 8999999 99999999999999999999999999874 5789999999999999999
Q ss_pred HhHhhhhhhhccCCCCCcchhHHHHHHHHHHHHHHhh
Q 038435 79 SYPIIEGMAWRKDKGQVPASVGLLSFVLSIIFLLLGS 115 (118)
Q Consensus 79 ~~Pf~~Gl~~Rkdkg~iP~~v~~~S~~la~~f~ll~~ 115 (118)
+|||+||||+||+ |+|+++++||++++++++++|.
T Consensus 1083 lyPf~kGL~gR~g--r~P~iv~v~s~ll~~~~sll~v 1117 (1135)
T PLN02248 1083 LYPFAKGLMGRRG--RTPTIVYVWSGLLSITISLLWV 1117 (1135)
T ss_pred HHHHHHHHhccCC--CCCeehHHHHHHHHHHHHHHhe
Confidence 9999999999955 9999999999999999999995
No 10
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=99.96 E-value=3.2e-30 Score=232.86 Aligned_cols=110 Identities=29% Similarity=0.544 Sum_probs=102.6
Q ss_pred CCCCceeeecCCCChhhhhhhccceeEeeccceehhHHHHHHHHHHHHHHHhhhheeee--CCchhhhHHHHHHHHHHHH
Q 038435 1 MKQPSFSPTNKLSDDEQVKLHKMGKFNFQTSTKFLAPLATLVMLNMIAFSGGIARMVIS--GGANELLGQVILSFYILLE 78 (118)
Q Consensus 1 ls~~~F~vT~K~~d~~~~~~y~~~~f~F~~~S~lfip~ttl~llNl~a~v~g~~~~~~~--~~~~~~~~ql~~~~~vv~~ 78 (118)
+|+++|+||+|+.|++++++ +|+|+|+ |||+|+|+||++++|++|+++|++|++++ ++|+++++|++||+|+|+|
T Consensus 912 ~se~~F~VTsK~~d~~~d~~--~ely~F~-~S~l~iP~ttllllNlvalv~Gi~~~i~~~~~~~g~l~~~l~~~~wvvv~ 988 (1044)
T PLN02915 912 GVDTNFTVTSKAADDEADEF--GELYLFK-WTTLLIPPTTLIILNMVGVVAGVSDAINNGYGSWGPLFGKLFFAFWVIVH 988 (1044)
T ss_pred ccCCcceecCCccccchhhh--ccceeec-ceehHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHH
Confidence 58999999999987665543 7999999 99999999999999999999999999874 6899999999999999999
Q ss_pred HhHhhhhhhhccCCCCCcchhHHHHHHHHHHHHHHhh
Q 038435 79 SYPIIEGMAWRKDKGQVPASVGLLSFVLSIIFLLLGS 115 (118)
Q Consensus 79 ~~Pf~~Gl~~Rkdkg~iP~~v~~~S~~la~~f~ll~~ 115 (118)
+|||+|||++|++ |+|+++++||++++++|+++|.
T Consensus 989 lyPf~kgLmgR~~--r~P~~v~v~s~lla~~~~ll~v 1023 (1044)
T PLN02915 989 LYPFLKGLMGRQN--RTPTIVVLWSILLASIFSLVWV 1023 (1044)
T ss_pred HHHHHHHHhCCCC--CCCeeehHHHHHHHHHHHHHHh
Confidence 9999999999995 9999999999999999999995
No 11
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=97.41 E-value=0.00019 Score=65.72 Aligned_cols=74 Identities=24% Similarity=0.297 Sum_probs=51.1
Q ss_pred CCCceeeecCCCChhhhhhhccceeEeeccceehhHHHHHHHHHHHHHHHhhhheeeeCCchhhhHHHHHHHHHHHHHhH
Q 038435 2 KQPSFSPTNKLSDDEQVKLHKMGKFNFQTSTKFLAPLATLVMLNMIAFSGGIARMVISGGANELLGQVILSFYILLESYP 81 (118)
Q Consensus 2 s~~~F~vT~K~~d~~~~~~y~~~~f~F~~~S~lfip~ttl~llNl~a~v~g~~~~~~~~~~~~~~~ql~~~~~vv~~~~P 81 (118)
++..|+||+|.. ++|++.|+|+.+. |.++++++|++|++.|++|...+.. ...+++.++.+-.+.|..
T Consensus 600 ~~~~F~VTpKg~------~~~~~~~~~~~~~----P~~~L~~L~l~gl~~g~~r~~~~~~--~~~~~~~~~~~W~~~nl~ 667 (852)
T PRK11498 600 HKGKFNVTAKGG------LVEEEYVDWVISR----PYIFLVLLNLVGVAVGIWRYFYGPP--NEILTVIVSLVWVFYNLI 667 (852)
T ss_pred cCCCcccCCCCc------cccccceehHHHH----HHHHHHHHHHHHHHHHHHHHHhCCc--ccchhhhhhHHHHHHHHH
Confidence 678999999953 3446788888333 7899999999999999999765322 222445455555555666
Q ss_pred hhhhhh
Q 038435 82 IIEGMA 87 (118)
Q Consensus 82 f~~Gl~ 87 (118)
++.+.+
T Consensus 668 ~l~~a~ 673 (852)
T PRK11498 668 ILGGAV 673 (852)
T ss_pred HHHHHH
Confidence 665544
No 12
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=96.55 E-value=0.0081 Score=53.71 Aligned_cols=79 Identities=19% Similarity=0.161 Sum_probs=49.6
Q ss_pred CCCceeeecCCCChhhhhhhccceeEeeccceehhHHHHHHHHHHHHHHHhhhheeeeCC-chhhhHHHHHHHHHHHHH-
Q 038435 2 KQPSFSPTNKLSDDEQVKLHKMGKFNFQTSTKFLAPLATLVMLNMIAFSGGIARMVISGG-ANELLGQVILSFYILLES- 79 (118)
Q Consensus 2 s~~~F~vT~K~~d~~~~~~y~~~~f~F~~~S~lfip~ttl~llNl~a~v~g~~~~~~~~~-~~~~~~ql~~~~~vv~~~- 79 (118)
++.+|+||+|....|. +..+++..|..+++.+|++|++.|++|....+. -+.. ++-.+|.+.++
T Consensus 489 ~~~~F~VT~Kg~~~~~-----------~~~~~~~~p~~~l~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~w~~~n~~ 554 (713)
T TIGR03030 489 KKPKFNVTPKGELLDE-----------DYFSPLSRPYLILFALILAGLAFGLYRIYGYPIERGVL---LVVLGWNLLNLI 554 (713)
T ss_pred CCCCceecCCCccccc-----------cccchHHHHHHHHHHHHHHHHHHHHHHHhcCccccchh---hHHHHHHHHHHH
Confidence 5678999999643221 113589999999999999999999999753322 1222 24444554444
Q ss_pred --hHhhhhhhhccCCCC
Q 038435 80 --YPIIEGMAWRKDKGQ 94 (118)
Q Consensus 80 --~Pf~~Gl~~Rkdkg~ 94 (118)
..-+-....|+.+++
T Consensus 555 ~~~~~~~~~~~r~QrR~ 571 (713)
T TIGR03030 555 LLGAALAVVAERRQRRS 571 (713)
T ss_pred HHHHHHHHHccCCCCCC
Confidence 333333444554443
No 13
>TIGR00394 lac_pts_IIC phosphotransferase system, lactose specific, IIC component. This family of proteins models the IIC domain of the phosphotransferase system (PTS) for lactose. The IIC domain catalyzes the transfer of a phosphoryl group from the IIB domain to lactose. When the IIC component and IIB components are in the same polypeptide chain they are designated IIBC.
Probab=63.34 E-value=18 Score=30.81 Aligned_cols=59 Identities=15% Similarity=0.246 Sum_probs=40.5
Q ss_pred eecccee----hhHHHHHHHHHH-H-HHHH---hhhheee----------------eCCchhhhHHHHHHHHHHHHHhHh
Q 038435 28 FQTSTKF----LAPLATLVMLNM-I-AFSG---GIARMVI----------------SGGANELLGQVILSFYILLESYPI 82 (118)
Q Consensus 28 F~~~S~l----fip~ttl~llNl-~-a~v~---g~~~~~~----------------~~~~~~~~~ql~~~~~vv~~~~Pf 82 (118)
||..-.+ ++|-...-++|. + +... |+-.... +++|...+.|+++-.--+++.|||
T Consensus 319 FGlPIvlNPil~IPFil~piv~~~i~~y~~~~~g~~~~~~~vpwttP~~l~~~l~Tgg~~~~~il~~v~l~i~~~IY~PF 398 (412)
T TIGR00394 319 FGAPIVLNPVFFIPFILAPIVNVWIFKFFVSVLGMNSFSANLPWTTPGPIGIVLGTGFAVLSFVLALLLIVVDTIIYYPF 398 (412)
T ss_pred hCchHhhchHHHHhHHHHHHHHHHHHHHHHHHcCCCceeeeCCCCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 5544444 678777778887 3 2332 3322111 246899999999999999999999
Q ss_pred hhhh
Q 038435 83 IEGM 86 (118)
Q Consensus 83 ~~Gl 86 (118)
.|-.
T Consensus 399 ~K~~ 402 (412)
T TIGR00394 399 VKVY 402 (412)
T ss_pred HHHH
Confidence 9865
No 14
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=49.33 E-value=48 Score=28.04 Aligned_cols=50 Identities=16% Similarity=0.010 Sum_probs=45.7
Q ss_pred CCchhhhHHHHHHHHHHHHHhHhhhhhhhccCCCCCcchhHHHHHHHHHH
Q 038435 60 GGANELLGQVILSFYILLESYPIIEGMAWRKDKGQVPASVGLLSFVLSII 109 (118)
Q Consensus 60 ~~~~~~~~ql~~~~~vv~~~~Pf~~Gl~~Rkdkg~iP~~v~~~S~~la~~ 109 (118)
|+-+....|+.++.-+.+..||.+...+..-+...+|.-.+++|+++-..
T Consensus 137 Gd~~~tlv~Va~n~l~qiv~y~~~~~~~l~v~~~~v~~~~i~~Sv~lyl~ 186 (342)
T COG0798 137 GDRELTLVLVAFNSLLQIVLYAPLGKFFLGVISISVPFWTIAKSVLLYLG 186 (342)
T ss_pred CcHhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHH
Confidence 67899999999999999999999999999888899999999999887654
No 15
>PF04144 SCAMP: SCAMP family; InterPro: IPR007273 In vertebrates, secretory carrier membrane proteins (SCAMPs) 1-3 constitute a family of putative membrane-trafficking proteins composed of cytoplasmic N-terminal sequences with NPF repeats, four central transmembrane regions (TMRs), and a cytoplasmic tail. SCAMPs probably function in endocytosis by recruiting EH-domain proteins to the N-terminal NPF repeats but may have additional functions mediated by their other sequences [].; GO: 0015031 protein transport, 0016021 integral to membrane
Probab=46.10 E-value=79 Score=23.70 Aligned_cols=52 Identities=17% Similarity=0.085 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHhhhheeeeCCchhhhHHHHHH-HHH-HHHHhHhhhhhhhccC
Q 038435 38 LATLVMLNMIAFSGGIARMVISGGANELLGQVILS-FYI-LLESYPIIEGMAWRKD 91 (118)
Q Consensus 38 ~ttl~llNl~a~v~g~~~~~~~~~~~~~~~ql~~~-~~v-v~~~~Pf~~Gl~~Rkd 91 (118)
.+..++.|+++..+.+..--...+++-.+..+++- -.- +.-.+|.|+++ |+|
T Consensus 44 ~~~~l~~N~i~~~~~~~~~~~~~~~~lai~y~~~~~P~sf~~wyrplY~A~--r~d 97 (177)
T PF04144_consen 44 LAITLFWNFIACLALLIAGGSGSDFGLAILYLLLGTPASFFCWYRPLYKAF--RTD 97 (177)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcceehHHHHHHHHHhHHHHHHHHHHHHHHH--hcc
Confidence 36678899988776554321123444444443222 222 34588999999 566
No 16
>PRK10297 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIC; Provisional
Probab=43.46 E-value=25 Score=30.32 Aligned_cols=28 Identities=18% Similarity=0.072 Sum_probs=25.3
Q ss_pred CCchhhhHHHHHHHHHHHHHhHhhhhhh
Q 038435 60 GGANELLGQVILSFYILLESYPIIEGMA 87 (118)
Q Consensus 60 ~~~~~~~~ql~~~~~vv~~~~Pf~~Gl~ 87 (118)
++|...+.|+++-.--+++.|||.|-.=
T Consensus 404 g~~~~~ilq~v~lvi~~lIY~PFvK~~d 431 (452)
T PRK10297 404 GSVAALLVALFNLGIATLIYLPFVVVAN 431 (452)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6799999999999999999999998753
No 17
>TIGR00359 cello_pts_IIC phosphotransferase system, cellobiose specific, IIC component. The family consists of the cellobiose specific form of the phosphotransferase system (PTS), IIC component.
Probab=42.84 E-value=26 Score=29.85 Aligned_cols=27 Identities=15% Similarity=0.208 Sum_probs=24.9
Q ss_pred CCchhhhHHHHHHHHHHHHHhHhhhhh
Q 038435 60 GGANELLGQVILSFYILLESYPIIEGM 86 (118)
Q Consensus 60 ~~~~~~~~ql~~~~~vv~~~~Pf~~Gl 86 (118)
|+|...+.|+++-.--+++.|||.|..
T Consensus 388 g~~~a~il~~v~lvi~~lIY~PFvk~~ 414 (423)
T TIGR00359 388 GSVSGAVMQLINLLISFVIYLPFFKAW 414 (423)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999875
No 18
>TIGR00410 lacE PTS system, lactose/cellobiose family IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. This family of proteins consists of both the cellobiose specific and the lactose specific forms of the phosphotransferase system (PTS) IIC component. The IIC domain catalyzes the transfer of a phosphoryl group from the IIB domain to the substrate. When the IIC component and IIB components are in the same polypeptide chain they are designated IIBC.
Probab=42.84 E-value=26 Score=29.85 Aligned_cols=27 Identities=15% Similarity=0.208 Sum_probs=24.9
Q ss_pred CCchhhhHHHHHHHHHHHHHhHhhhhh
Q 038435 60 GGANELLGQVILSFYILLESYPIIEGM 86 (118)
Q Consensus 60 ~~~~~~~~ql~~~~~vv~~~~Pf~~Gl 86 (118)
|+|...+.|+++-.--+++.|||.|..
T Consensus 388 g~~~a~il~~v~lvi~~lIY~PFvk~~ 414 (423)
T TIGR00410 388 GSVSGAVMQLINLLISFVIYLPFFKAW 414 (423)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999875
No 19
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=42.24 E-value=47 Score=23.34 Aligned_cols=41 Identities=22% Similarity=0.046 Sum_probs=25.9
Q ss_pred CCchhhhHH-HHHHHHHHHHHhHhhhhhhhccCCCCCcchhHHHH
Q 038435 60 GGANELLGQ-VILSFYILLESYPIIEGMAWRKDKGQVPASVGLLS 103 (118)
Q Consensus 60 ~~~~~~~~q-l~~~~~vv~~~~Pf~~Gl~~Rkdkg~iP~~v~~~S 103 (118)
|+|.-..++ +++.+|++++.+.... .+.|.|.-+.-..+.|
T Consensus 2 GS~~Fi~~~~~~~~~Wi~~N~~~~~~---~~fDpyPFilLnl~lS 43 (108)
T PF06210_consen 2 GSWTFIIIFTVFLAVWILLNILAPPR---PAFDPYPFILLNLVLS 43 (108)
T ss_pred CcHHHHHHHHHHHHHHHHHHhhcccc---CCCCCccHHHHHHHHH
Confidence 455544444 5778999999988766 4789555444444444
No 20
>COG1455 CelB Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism]
Probab=41.98 E-value=58 Score=28.34 Aligned_cols=27 Identities=22% Similarity=0.186 Sum_probs=24.6
Q ss_pred CCchhhhHHHHHHHHHHHHHhHhhhhh
Q 038435 60 GGANELLGQVILSFYILLESYPIIEGM 86 (118)
Q Consensus 60 ~~~~~~~~ql~~~~~vv~~~~Pf~~Gl 86 (118)
++|....+|+++-.--+++.|||.|-.
T Consensus 389 ~~w~a~vlq~i~l~v~~lIY~PF~kv~ 415 (432)
T COG1455 389 GDWRALVLQLINLVVAVLIYLPFFKVY 415 (432)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999999854
No 21
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=41.52 E-value=17 Score=23.92 Aligned_cols=44 Identities=18% Similarity=0.304 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhhhheeeeCCchhhhHHHHHHHHHHHHHhHhhh
Q 038435 41 LVMLNMIAFSGGIARMVISGGANELLGQVILSFYILLESYPIIE 84 (118)
Q Consensus 41 l~llNl~a~v~g~~~~~~~~~~~~~~~ql~~~~~vv~~~~Pf~~ 84 (118)
+.+.=++|++.|...--..-......++.+++.-+++=.||+|+
T Consensus 17 l~~~~iisfi~Gy~~q~~~~~~~~~~~g~~~~~lv~vP~Wp~y~ 60 (76)
T PF06645_consen 17 LIISAIISFIVGYITQSFSYTFYIYGAGVVLTLLVVVPPWPFYN 60 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeCCcHhhc
Confidence 34445566666665422222345667789999999999999975
No 22
>PF05106 Phage_holin_3: Phage holin family (Lysis protein S); InterPro: IPR006481 This entry is represented by the Bacteriophage lambda, GpS. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. Holins act against the host cell membrane to allow lytic enzymes of the phage to reach the bacterial cell wall. This family includes the product of the S gene of phage lambda.
Probab=36.74 E-value=60 Score=22.32 Aligned_cols=41 Identities=20% Similarity=0.220 Sum_probs=32.8
Q ss_pred HHHHHHhhhheee-eCCchhhhHHHHHHHHHHHHHhHhhhhh
Q 038435 46 MIAFSGGIARMVI-SGGANELLGQVILSFYILLESYPIIEGM 86 (118)
Q Consensus 46 l~a~v~g~~~~~~-~~~~~~~~~ql~~~~~vv~~~~Pf~~Gl 86 (118)
+.|++.+..|..+ +++|...++|...|+-+-...-|.++-+
T Consensus 26 ~lA~~mA~LR~~Y~g~~~~r~llea~lCg~lal~~~~~L~~~ 67 (100)
T PF05106_consen 26 LLAFVMALLRGAYGGGSWRRRLLEALLCGLLALFARSLLEYF 67 (100)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666677665 4689999999999999999999998633
No 23
>KOG2290 consensus Rhomboid family proteins [Signal transduction mechanisms]
Probab=35.15 E-value=53 Score=29.47 Aligned_cols=52 Identities=17% Similarity=0.159 Sum_probs=33.2
Q ss_pred CCchhhhHHHHHHHHHHHHHhHhhhhhhhccCCCCCc----chhHHHHHHHHHHHHHHh
Q 038435 60 GGANELLGQVILSFYILLESYPIIEGMAWRKDKGQVP----ASVGLLSFVLSIIFLLLG 114 (118)
Q Consensus 60 ~~~~~~~~ql~~~~~vv~~~~Pf~~Gl~~Rkdkg~iP----~~v~~~S~~la~~f~ll~ 114 (118)
.+|..++|-+ +-...-+.++|.+. |+.+|+||.- .+.++.|.+|+.++++++
T Consensus 565 DN~aHlfG~i-~GLl~s~~~~PYi~--Fg~~d~yrKr~~ilIs~ivf~~Lla~Lvv~fy 620 (652)
T KOG2290|consen 565 DNWAHLFGTI-FGLLTSIIFLPYID--FGDFDLYRKRFYILISQIVFSGLLAILVVVFY 620 (652)
T ss_pred hhHHHHHHHH-HHHHHHHHhhcccc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHhee
Confidence 6787777743 34445567788864 6677888864 344555666666666654
No 24
>PF01594 UPF0118: Domain of unknown function DUF20; InterPro: IPR002549 This is a family of hypothetical proteins. A number of the sequence records state they are transmembrane proteins or putative permeases. It is not clear what source suggested that these proteins might be permeases and this information should be treated with caution.
Probab=34.50 E-value=1.4e+02 Score=23.38 Aligned_cols=39 Identities=13% Similarity=0.119 Sum_probs=27.8
Q ss_pred hhhHHHHHHHHHHHHHhHhhhhhhhccCCCCCcchhHHHHH
Q 038435 64 ELLGQVILSFYILLESYPIIEGMAWRKDKGQVPASVGLLSF 104 (118)
Q Consensus 64 ~~~~ql~~~~~vv~~~~Pf~~Gl~~Rkdkg~iP~~v~~~S~ 104 (118)
+.+.-++++..+-...+|.++-+ ||-|.+.+.++.+..+
T Consensus 20 ~~~~p~~~a~~la~~~~p~~~~l--~~~~~~r~la~~l~~~ 58 (327)
T PF01594_consen 20 PFLLPFVLALVLAYLLNPLVRFL--RRFGIPRSLAALLVLL 58 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHcCCCcHHHHHHHHH
Confidence 67777888999999999999998 4444455555444433
No 25
>PRK09592 celD cellobiose phosphotransferase system IIC component; Reviewed
Probab=29.40 E-value=57 Score=27.96 Aligned_cols=27 Identities=11% Similarity=0.187 Sum_probs=24.2
Q ss_pred CCchhhhHHHHHHHHHHHHHhHhhhhh
Q 038435 60 GGANELLGQVILSFYILLESYPIIEGM 86 (118)
Q Consensus 60 ~~~~~~~~ql~~~~~vv~~~~Pf~~Gl 86 (118)
++|...+.|+++-.--+++.|||.|..
T Consensus 410 g~~~~~il~~v~l~i~~~IY~PF~k~~ 436 (449)
T PRK09592 410 ADWRAAVLALVCAIVAFLVWFPFIKHY 436 (449)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368899999999999999999999875
No 26
>PF06638 Strabismus: Strabismus protein; InterPro: IPR009539 This family consists of several strabismus (STB) or Van Gogh-like (VANGL) proteins 1 and 2. The exact function of this family is unknown. It is thought, however that STB1 gene and STB2 may be potent tumour suppressor gene candidates [].; GO: 0007275 multicellular organismal development, 0016021 integral to membrane
Probab=26.60 E-value=68 Score=28.51 Aligned_cols=88 Identities=20% Similarity=0.365 Sum_probs=49.7
Q ss_pred eEeeccceehhHHHHHHHHHHHHHHHhhhheeee--------CCchhhhHHHHHHHHHHHHHhHh-hhhhhhccCCCCCc
Q 038435 26 FNFQTSTKFLAPLATLVMLNMIAFSGGIARMVIS--------GGANELLGQVILSFYILLESYPI-IEGMAWRKDKGQVP 96 (118)
Q Consensus 26 f~F~~~S~lfip~ttl~llNl~a~v~g~~~~~~~--------~~~~~~~~ql~~~~~vv~~~~Pf-~~Gl~~Rkdkg~iP 96 (118)
..|+ .+-.+-+..+ +++-++|++.=+.-++.- ...+.-+-+++++...=++++=+ .=+||.|+.+..+|
T Consensus 84 ~~~~-c~r~l~~~~~-~~L~l~aflSPiaflvLP~il~~~~~~~C~~~CeGllislafKLliLlig~WAlf~R~~~a~lP 161 (505)
T PF06638_consen 84 VGFD-CSRYLGLILA-SILGLLAFLSPIAFLVLPKILWRWQLEPCGAECEGLLISLAFKLLILLIGTWALFFRRPRADLP 161 (505)
T ss_pred cCcc-cceeHHHHHH-HHHHHHHHHhhHHHHHhcccccCccccccCCcccceeHHHHHHHHHHHHHHHHHhcCcccCCCc
Confidence 3466 5555544444 466888887665544420 11222222333332221111111 12567899999999
Q ss_pred chhHHHHHHHHHHHHHHhh
Q 038435 97 ASVGLLSFVLSIIFLLLGS 115 (118)
Q Consensus 97 ~~v~~~S~~la~~f~ll~~ 115 (118)
-.-...+.+++++|..+.+
T Consensus 162 Rif~fRa~ll~Lvfl~~~s 180 (505)
T PF06638_consen 162 RIFVFRALLLVLVFLFLFS 180 (505)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 9999999988888776543
No 27
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=25.77 E-value=49 Score=24.81 Aligned_cols=29 Identities=14% Similarity=0.315 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHHHHhhhheee---eCCchh
Q 038435 36 APLATLVMLNMIAFSGGIARMVI---SGGANE 64 (118)
Q Consensus 36 ip~ttl~llNl~a~v~g~~~~~~---~~~~~~ 64 (118)
+|+...++.++++|..|+..+-+ +.+|++
T Consensus 94 vP~~~~~~~S~~~Fg~gllGisYGilSaSWD~ 125 (153)
T PF11947_consen 94 VPPWAVLLVSLVFFGLGLLGISYGILSASWDP 125 (153)
T ss_pred cCchHHHHHHHHHHHHHHHhhhhhhcccccCC
Confidence 57777788888888877766654 345643
No 28
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=25.53 E-value=3.5e+02 Score=21.54 Aligned_cols=69 Identities=19% Similarity=0.224 Sum_probs=38.1
Q ss_pred hccceeEeeccceehhHHHHHHHHHHHHHHHhhhheeeeC----CchhhhHHHHHHHHHHHHHhHhhhhhhhccCCCCCc
Q 038435 21 HKMGKFNFQTSTKFLAPLATLVMLNMIAFSGGIARMVISG----GANELLGQVILSFYILLESYPIIEGMAWRKDKGQVP 96 (118)
Q Consensus 21 y~~~~f~F~~~S~lfip~ttl~llNl~a~v~g~~~~~~~~----~~~~~~~ql~~~~~vv~~~~Pf~~Gl~~Rkdkg~iP 96 (118)
-|+=.+-.| +| + +++-+++++.|+.-.+... +.=.+++-.+-.|+.+...|=|.--+- -|+++.|
T Consensus 91 tdp~lm~lD-ss-L-------l~lg~~aLlsgitaff~~nA~~~GlItlll~a~vgGfamy~my~y~yr~~--ad~sqr~ 159 (226)
T COG4858 91 TDPWLMWLD-SS-L-------LFLGAMALLSGITAFFQKNAQVYGLITLLLTAVVGGFAMYIMYYYAYRMR--ADNSQRP 159 (226)
T ss_pred CCceEEEec-cc-H-------HHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHhhhHHHHHHHHHHHHhh--cccccCC
Confidence 335566677 33 3 4444555555555444322 222344444556677777777766664 3777887
Q ss_pred chhH
Q 038435 97 ASVG 100 (118)
Q Consensus 97 ~~v~ 100 (118)
.-..
T Consensus 160 ~~~K 163 (226)
T COG4858 160 GTWK 163 (226)
T ss_pred chHH
Confidence 6443
No 29
>COG3366 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.84 E-value=2.1e+02 Score=23.93 Aligned_cols=54 Identities=28% Similarity=0.286 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHhhhhe---eeeC--CchhhhHHHHHHHHHHH------HHhHhhhhhhhccC
Q 038435 38 LATLVMLNMIAFSGGIARM---VISG--GANELLGQVILSFYILL------ESYPIIEGMAWRKD 91 (118)
Q Consensus 38 ~ttl~llNl~a~v~g~~~~---~~~~--~~~~~~~ql~~~~~vv~------~~~Pf~~Gl~~Rkd 91 (118)
..++++-|++...+|..-+ ++.| ++.....-+++..-+-. |..|.|=|+||||.
T Consensus 221 av~v~~~~~~~~~~g~~~a~~li~~GiLs~~eali~LliG~ils~~~~~lk~slP~~vsifG~k~ 285 (311)
T COG3366 221 AVTVVLTNLANIIAGIVLAAGLLDSGILSEKEALIALLLGGILSLPIIYLKHSLPTYVSIFGRKL 285 (311)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhHHHhhHHHHHhhcccceeeecccc
Confidence 3445555555555554433 2233 24444444444444433 88999999999977
No 30
>PRK09664 tryptophan permease TnaB; Provisional
Probab=22.94 E-value=4.2e+02 Score=22.77 Aligned_cols=64 Identities=20% Similarity=0.126 Sum_probs=44.1
Q ss_pred eeccceehhHHHHHHHHHHHHHHHhhhheeeeCCchhhhHHHHHHHHHHHHHhHhhhhhhhccC----CCCCcchhHHHH
Q 038435 28 FQTSTKFLAPLATLVMLNMIAFSGGIARMVISGGANELLGQVILSFYILLESYPIIEGMAWRKD----KGQVPASVGLLS 103 (118)
Q Consensus 28 F~~~S~lfip~ttl~llNl~a~v~g~~~~~~~~~~~~~~~ql~~~~~vv~~~~Pf~~Gl~~Rkd----kg~iP~~v~~~S 103 (118)
..++..-|+||..+++.+--.|+.++..+ +.+++ +.....|.+-.--.||. +||.|-.-....
T Consensus 324 ~~~~~ltflPPl~~al~~P~gFl~AL~yA-----------G~~~~--il~~ilP~lM~~~~Rk~~~~~~y~v~GG~~~l~ 390 (415)
T PRK09664 324 FKTVLLTFLPPALLYLIFPNGFIYGIGGA-----------GLCAT--IWAVIIPAVLAIKARKKFPNQMFTVWGGNLIPA 390 (415)
T ss_pred eeeehhhHhhhHHHHHHhhHHHHHHHHHH-----------HHHHH--HHHHHHHHHHHHHHhcccCCCCceeeCCHHHHH
Confidence 34578899999999999999999888653 23444 44557888766666764 455665555444
Q ss_pred H
Q 038435 104 F 104 (118)
Q Consensus 104 ~ 104 (118)
+
T Consensus 391 ~ 391 (415)
T PRK09664 391 I 391 (415)
T ss_pred H
Confidence 3
No 31
>KOG1314 consensus DHHC-type Zn-finger protein [General function prediction only]
Probab=22.78 E-value=2.9e+02 Score=23.91 Aligned_cols=37 Identities=14% Similarity=0.161 Sum_probs=31.0
Q ss_pred eCCchhhhHHHHHHHHHHHHHhHhhhhhhhccCCCCCcc
Q 038435 59 SGGANELLGQVILSFYILLESYPIIEGMAWRKDKGQVPA 97 (118)
Q Consensus 59 ~~~~~~~~~ql~~~~~vv~~~~Pf~~Gl~~Rkdkg~iP~ 97 (118)
..+.++..-|+.|-.|..+..|-++.+++. +-|.+|.
T Consensus 42 ~ss~~g~~n~i~f~~~~~m~~~ny~~A~~~--gPG~vp~ 78 (414)
T KOG1314|consen 42 LSSFLGVPNQITFLLWTSMILYNYFNAIFT--GPGFVPL 78 (414)
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHhc--CCCCCCC
Confidence 357788999999999999999999999995 4447764
No 32
>KOG3030 consensus Lipid phosphate phosphatase and related enzymes of the PAP2 family [Lipid transport and metabolism]
Probab=20.21 E-value=3e+02 Score=22.87 Aligned_cols=53 Identities=19% Similarity=0.407 Sum_probs=33.4
Q ss_pred cceehhHHHHHHHHHHHHHHHhhhheeee-CCchhhhHHH----HHHHHHHHHHhHhhh
Q 038435 31 STKFLAPLATLVMLNMIAFSGGIARMVIS-GGANELLGQV----ILSFYILLESYPIIE 84 (118)
Q Consensus 31 ~S~lfip~ttl~llNl~a~v~g~~~~~~~-~~~~~~~~ql----~~~~~vv~~~~Pf~~ 84 (118)
.+.+.-|..-.+.+ ++|+.+|+.|+..+ .-|..-+.+. +.+.++..+.+|..+
T Consensus 209 ~~rllr~~l~f~~l-~~A~~v~lSRV~DYkHHwsDV~aG~liG~~~A~~~~~~v~~~f~ 266 (317)
T KOG3030|consen 209 RGRLLRPLLQFLPL-MLALLVGLSRVSDYKHHWSDVLAGALIGAFVAYFLYRYVFPNFK 266 (317)
T ss_pred CchhHHHHHHHHHH-HHHHHHeeehhcccccccHHHHHHHHHHHHHHHHHHhhhcchhh
Confidence 37777776665544 67888999999864 4565555444 444445555555555
Done!