Query 038435
Match_columns 118
No_of_seqs 113 out of 250
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 19:09:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038435.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038435hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hg6_A Cellulose synthase subu 95.0 0.047 1.6E-06 47.9 6.6 76 2-90 499-574 (802)
2 3rlb_A THIT; S-component, ECF 34.2 1E+02 0.0034 22.6 5.9 32 67-99 89-120 (192)
3 3qnq_A PTS system, cellobiose- 25.5 53 0.0018 27.0 3.4 26 61-86 397-422 (442)
4 2hp4_A T-cell surface glycopro 21.9 40 0.0014 21.2 1.6 14 24-37 100-113 (114)
5 2i88_A Colicin-E1; protein-mem 13.6 2.5E+02 0.0087 20.8 4.4 16 26-41 124-139 (191)
6 1kf6_C Fumarate reductase 15 k 10.4 4.4E+02 0.015 18.3 5.8 15 88-102 96-110 (130)
7 3mfn_A Uncharacterized protein 10.0 2.7E+02 0.0093 20.0 3.4 32 62-98 65-96 (157)
8 3j1r_A Archaeal adhesion filam 9.8 2.3E+02 0.0078 14.5 2.7 17 37-53 3-19 (26)
9 2k1a_A Integrin alpha-IIB; sin 9.1 2.8E+02 0.0095 15.5 2.6 17 91-107 4-20 (42)
10 2l8s_A Integrin alpha-1; trans 9.1 2.4E+02 0.0081 16.8 2.4 15 93-107 5-19 (54)
No 1
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=94.97 E-value=0.047 Score=47.85 Aligned_cols=76 Identities=12% Similarity=0.093 Sum_probs=56.4
Q ss_pred CCCceeeecCCCChhhhhhhccceeEeeccceehhHHHHHHHHHHHHHHHhhhheeeeCCchhhhHHHHHHHHHHHHHhH
Q 038435 2 KQPSFSPTNKLSDDEQVKLHKMGKFNFQTSTKFLAPLATLVMLNMIAFSGGIARMVISGGANELLGQVILSFYILLESYP 81 (118)
Q Consensus 2 s~~~F~vT~K~~d~~~~~~y~~~~f~F~~~S~lfip~ttl~llNl~a~v~g~~~~~~~~~~~~~~~ql~~~~~vv~~~~P 81 (118)
++..|.+|+|..+.+.. +- +.+..|...++++|+++++.|+++..... ....+.++.+.|.+.+.+.
T Consensus 499 ~~~~f~VT~Kg~~~~~~---------~~--~~~~~p~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~w~~~~l~~ 565 (802)
T 4hg6_A 499 RSARFAVTAKDETLSEN---------YI--SPIYRPLLFTFLLCLSGVLATLVRWVAFP--GDRSVLLVVGGWAVLNVLL 565 (802)
T ss_dssp TCCCCCCCCCCCCCSSC---------CB--CTTCHHHHHHHHHHHHHHHHHHHHHHHCG--GGHHHHHHHHHHHHHHHHH
T ss_pred CCCcceECCCCcccccc---------ch--hhHHHHHHHHHHHHHHHHHHHHHHHhccC--CccchhhhhhHHHHHHHHH
Confidence 45789999997643321 11 36778999999999999999999875332 3445667888999999999
Q ss_pred hhhhhhhcc
Q 038435 82 IIEGMAWRK 90 (118)
Q Consensus 82 f~~Gl~~Rk 90 (118)
..-++....
T Consensus 566 l~~~~~~~~ 574 (802)
T 4hg6_A 566 VGFALRAVA 574 (802)
T ss_dssp HHHHHTTTB
T ss_pred HHHHHHHHh
Confidence 888777533
No 2
>3rlb_A THIT; S-component, ECF transporter, ABC transporter, substrate-BIN domain, membrane, thiamine-binding protein; HET: BNG VIB; 2.00A {Lactococcus lactis subsp}
Probab=34.15 E-value=1e+02 Score=22.56 Aligned_cols=32 Identities=25% Similarity=0.250 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHhHhhhhhhhccCCCCCcchh
Q 038435 67 GQVILSFYILLESYPIIEGMAWRKDKGQVPASV 99 (118)
Q Consensus 67 ~ql~~~~~vv~~~~Pf~~Gl~~Rkdkg~iP~~v 99 (118)
.|.++.--+-....-.. |++.||.|+|.+..+
T Consensus 89 ~q~lldy~laf~~~Gla-G~f~~~~~~~~~~~~ 120 (192)
T 3rlb_A 89 SQAFLEYLVAPVSLGIA-GLFRQKTAPLKLAPV 120 (192)
T ss_dssp HHHHHHHTHHHHHGGGG-GGGCCCSSSCCHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HhheeccccccHHHH
Confidence 45555544333344343 888777677755443
No 3
>3qnq_A PTS system, cellobiose-specific IIC component; membrane protein, transporter, enzyme IIC, phosphoenolpyruva phosphotransferase system; HET: CBS ZDM MAL CIT; 3.29A {Bacillus cereus}
Probab=25.53 E-value=53 Score=26.96 Aligned_cols=26 Identities=8% Similarity=0.046 Sum_probs=23.1
Q ss_pred CchhhhHHHHHHHHHHHHHhHhhhhh
Q 038435 61 GANELLGQVILSFYILLESYPIIEGM 86 (118)
Q Consensus 61 ~~~~~~~ql~~~~~vv~~~~Pf~~Gl 86 (118)
+|...+.|+++-.--+++.|||.|-.
T Consensus 397 ~~~~~il~~~~~~i~~~iy~PF~k~~ 422 (442)
T 3qnq_A 397 KISGVILQLVNFALAFVIYLPFLKIW 422 (442)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48888999999999999999999854
No 4
>2hp4_A T-cell surface glycoprotein CD8 alpha chain; CO-receptor, soluble protein, KD, protein engineering, immunotherapy, immune-suppressor, immune system; 2.10A {Homo sapiens} PDB: 1akj_D 1cd8_A 3qzw_G 2q3a_A
Probab=21.89 E-value=40 Score=21.21 Aligned_cols=14 Identities=14% Similarity=0.252 Sum_probs=11.2
Q ss_pred ceeEeeccceehhH
Q 038435 24 GKFNFQTSTKFLAP 37 (118)
Q Consensus 24 ~~f~F~~~S~lfip 37 (118)
....|+..+++|.|
T Consensus 100 ~~l~Fg~g~~~~~~ 113 (114)
T 2hp4_A 100 SIMYFSHFVPVFLP 113 (114)
T ss_dssp TEEEECCCEEECCC
T ss_pred CcEEECCCeEeeee
Confidence 45678888998887
No 5
>2i88_A Colicin-E1; protein-membrane interactions, toxin-membrane interactions, toxin structure, voltage-gated channel, membrane protein; 2.50A {Escherichia coli}
Probab=13.60 E-value=2.5e+02 Score=20.79 Aligned_cols=16 Identities=6% Similarity=-0.064 Sum_probs=7.7
Q ss_pred eEeeccceehhHHHHH
Q 038435 26 FNFQTSTKFLAPLATL 41 (118)
Q Consensus 26 f~F~~~S~lfip~ttl 41 (118)
||=+.|.|+|+-+=++
T Consensus 124 ~eTgNW~Pl~lelEs~ 139 (191)
T 2i88_A 124 KDTGDWKPLFLTLEKK 139 (191)
T ss_dssp HHHCCCHHHHHHHHHH
T ss_pred hhCCCcHHHHHHHHHH
Confidence 3344455555544443
No 6
>1kf6_C Fumarate reductase 15 kDa hydrophobic protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: f.21.2.2 PDB: 1kfy_C* 1l0v_C* 2b76_C* 3cir_C* 3p4p_C* 3p4q_C* 3p4r_C* 3p4s_C*
Probab=10.45 E-value=4.4e+02 Score=18.28 Aligned_cols=15 Identities=0% Similarity=-0.203 Sum_probs=9.2
Q ss_pred hccCCCCCcchhHHH
Q 038435 88 WRKDKGQVPASVGLL 102 (118)
Q Consensus 88 ~Rkdkg~iP~~v~~~ 102 (118)
.+.+++|+|-..+++
T Consensus 96 I~v~~~~~~~~~i~~ 110 (130)
T 1kf6_C 96 IIVKDEKMGPEPIIK 110 (130)
T ss_dssp CBSSSSBCCSHHHHH
T ss_pred eeeCCCcCChHHHHH
Confidence 345566787666654
No 7
>3mfn_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 2.02A {Dyadobacter fermentans}
Probab=9.99 E-value=2.7e+02 Score=19.95 Aligned_cols=32 Identities=16% Similarity=0.130 Sum_probs=26.5
Q ss_pred chhhhHHHHHHHHHHHHHhHhhhhhhhccCCCCCcch
Q 038435 62 ANELLGQVILSFYILLESYPIIEGMAWRKDKGQVPAS 98 (118)
Q Consensus 62 ~~~~~~ql~~~~~vv~~~~Pf~~Gl~~Rkdkg~iP~~ 98 (118)
.-+|.|...-++.++++ .++++.|++||.|.-
T Consensus 65 YVKmAG~tAYsGvL~aL-----D~~lG~K~~grk~vD 96 (157)
T 3mfn_A 65 YVKMAGHTAYSGVLFAL-----DHYFGKKTKGRKDVD 96 (157)
T ss_dssp HHHHHHHHHHHHHHHHH-----HHHHCCCSSSCCCHH
T ss_pred HHHhccchhHHHHHHHH-----HHHhccccCCCCChH
Confidence 35788999999988875 589999999999853
No 8
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=9.84 E-value=2.3e+02 Score=14.50 Aligned_cols=17 Identities=24% Similarity=0.554 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHhh
Q 038435 37 PLATLVMLNMIAFSGGI 53 (118)
Q Consensus 37 p~ttl~llNl~a~v~g~ 53 (118)
|.+..+++=++++++++
T Consensus 3 piVA~~lLIviav~aaV 19 (26)
T 3j1r_A 3 PVIATLLLILIAVAAAV 19 (26)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 55666666677776654
No 9
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=9.13 E-value=2.8e+02 Score=15.49 Aligned_cols=17 Identities=12% Similarity=0.149 Sum_probs=11.6
Q ss_pred CCCCCcchhHHHHHHHH
Q 038435 91 DKGQVPASVGLLSFVLS 107 (118)
Q Consensus 91 dkg~iP~~v~~~S~~la 107 (118)
...++|+-+++.|++..
T Consensus 4 ~~~~vp~wiIi~s~l~G 20 (42)
T 2k1a_A 4 EERAIPIWWVLVGVLGG 20 (42)
T ss_dssp SCCCCCHHHHHHHHHHH
T ss_pred CcCCcchHHHHHHHHHH
Confidence 34578888888776543
No 10
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=9.06 E-value=2.4e+02 Score=16.78 Aligned_cols=15 Identities=47% Similarity=0.461 Sum_probs=10.4
Q ss_pred CCCcchhHHHHHHHH
Q 038435 93 GQVPASVGLLSFVLS 107 (118)
Q Consensus 93 g~iP~~v~~~S~~la 107 (118)
.++|+-+++.|++..
T Consensus 5 ~~vp~WiIi~svl~G 19 (54)
T 2l8s_A 5 GRVPLWVILLSAFAG 19 (54)
T ss_dssp CCCCTHHHHHHHHHH
T ss_pred ccCchHHHHHHHHHH
Confidence 368888887776543
Done!