Query 038435
Match_columns 118
No_of_seqs 113 out of 250
Neff 5.5
Searched_HMMs 13730
Date Mon Mar 25 19:09:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038435.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/038435hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1l8ya_ a.21.1.1 (A:) Nucleola 12.1 12 0.00089 22.7 -1.2 13 17-29 59-71 (84)
2 d1rh1a2 f.1.1.1 (A:313-511) Co 8.1 3.1E+02 0.023 18.6 5.7 19 26-44 123-141 (199)
3 d2fyga1 g.86.1.1 (A:6-128) Non 7.9 47 0.0035 21.4 0.4 16 2-17 44-59 (123)
4 d1ldda_ a.4.5.34 (A:) Anaphase 7.5 54 0.0039 19.3 0.5 18 78-97 8-25 (74)
5 d1kf6c_ f.21.2.2 (C:) Fumarate 7.0 3E+02 0.022 17.4 5.8 14 89-102 97-110 (130)
6 d1gvpa_ b.40.4.7 (A:) Gene V p 6.8 66 0.0048 19.5 0.7 16 18-34 53-68 (87)
7 d1ppjc1 f.32.1.1 (C:261-379) M 5.9 2.7E+02 0.019 17.0 3.5 25 70-94 34-58 (119)
8 d1nezg_ b.1.1.1 (G:) CD8 {Mous 5.7 65 0.0047 19.3 0.2 37 4-40 80-121 (122)
9 d1j5ja_ g.3.7.2 (A:) Bekm-1 {L 5.4 92 0.0067 15.7 0.7 11 79-89 13-23 (36)
10 d1a87a_ f.1.1.1 (A:) Colicin N 5.4 3.2E+02 0.023 19.7 4.0 18 26-43 219-236 (297)
No 1
>d1l8ya_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.08 E-value=12 Score=22.70 Aligned_cols=13 Identities=8% Similarity=-0.100 Sum_probs=11.3
Q ss_pred hhhhhccceeEee
Q 038435 17 QVKLHKMGKFNFQ 29 (118)
Q Consensus 17 ~~~~y~~~~f~F~ 29 (118)
+.+|||.|+.|.+
T Consensus 59 dqkryerel~emr 71 (84)
T d1l8ya_ 59 DQKRYERELSEMR 71 (84)
T ss_dssp HHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhc
Confidence 4589999999998
No 2
>d1rh1a2 f.1.1.1 (A:313-511) Colicin B C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=8.11 E-value=3.1e+02 Score=18.59 Aligned_cols=19 Identities=5% Similarity=0.135 Sum_probs=10.8
Q ss_pred eEeeccceehhHHHHHHHH
Q 038435 26 FNFQTSTKFLAPLATLVML 44 (118)
Q Consensus 26 f~F~~~S~lfip~ttl~ll 44 (118)
|+=+.|-|+|+-+-++++-
T Consensus 123 ~eTgNWrPl~vk~Et~a~~ 141 (199)
T d1rh1a2 123 YQTGNWGPLMLEVESWVIS 141 (199)
T ss_dssp HSSSCCHHHHHHHHHHHHT
T ss_pred hhCCCchhHHHHHHHHHHH
Confidence 4445566666666555543
No 3
>d2fyga1 g.86.1.1 (A:6-128) Nonstructural protein 10, NSP10 {SARS coronavirus [TaxId: 227859]}
Probab=7.88 E-value=47 Score=21.37 Aligned_cols=16 Identities=6% Similarity=-0.109 Sum_probs=12.1
Q ss_pred CCCceeeecCCCChhh
Q 038435 2 KQPSFSPTNKLSDDEQ 17 (118)
Q Consensus 2 s~~~F~vT~K~~d~~~ 17 (118)
+++++.||.|.+...+
T Consensus 44 ~G~G~AiT~~pea~~~ 59 (123)
T d2fyga1 44 TGTGQAITVTPEANMD 59 (123)
T ss_dssp CSCCCSEESSCCCCTT
T ss_pred CCCceEEEecCCCCCC
Confidence 5788999999865443
No 4
>d1ldda_ a.4.5.34 (A:) Anaphase promoting complex (APC) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=7.48 E-value=54 Score=19.28 Aligned_cols=18 Identities=33% Similarity=0.425 Sum_probs=13.4
Q ss_pred HHhHhhhhhhhccCCCCCcc
Q 038435 78 ESYPIIEGMAWRKDKGQVPA 97 (118)
Q Consensus 78 ~~~Pf~~Gl~~Rkdkg~iP~ 97 (118)
.+|||++||..--+ .+|.
T Consensus 8 ~~w~yI~gMLtN~~--slpl 25 (74)
T d1ldda_ 8 RSLPFIEGMLTNLG--AMKL 25 (74)
T ss_dssp HHHHHHHHHHHHHC--SEEH
T ss_pred HHHHHHHHHHhcCC--CCCH
Confidence 57999999995443 6764
No 5
>d1kf6c_ f.21.2.2 (C:) Fumarate reductase subunit FrdC {Escherichia coli [TaxId: 562]}
Probab=6.96 E-value=3e+02 Score=17.44 Aligned_cols=14 Identities=0% Similarity=-0.175 Sum_probs=7.2
Q ss_pred ccCCCCCcchhHHH
Q 038435 89 RKDKGQVPASVGLL 102 (118)
Q Consensus 89 Rkdkg~iP~~v~~~ 102 (118)
+.+.+|+|-..+++
T Consensus 97 ~v~~~~~~~~~iv~ 110 (130)
T d1kf6c_ 97 IVKDEKMGPEPIIK 110 (130)
T ss_dssp BSSSSBCCSHHHHH
T ss_pred hhcCccCChHHHHH
Confidence 33345666555554
No 6
>d1gvpa_ b.40.4.7 (A:) Gene V protein {Enterobacteria phage M13, including coliphage f1 [TaxId: 10870]}
Probab=6.81 E-value=66 Score=19.50 Aligned_cols=16 Identities=13% Similarity=0.202 Sum_probs=12.5
Q ss_pred hhhhccceeEeecccee
Q 038435 18 VKLHKMGKFNFQTSTKF 34 (118)
Q Consensus 18 ~~~y~~~~f~F~~~S~l 34 (118)
..-|.+|.|+.+ ++.+
T Consensus 53 qp~Y~~G~Y~i~-p~S~ 68 (87)
T d1gvpa_ 53 QPAYAPGLYTVH-LSSF 68 (87)
T ss_dssp CCCCCSEEEEEC-GGGE
T ss_pred CCCCCCccEEEc-hHHe
Confidence 368999999999 5544
No 7
>d1ppjc1 f.32.1.1 (C:261-379) Mitochondrial cytochrome b subunit, C-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.86 E-value=2.7e+02 Score=17.02 Aligned_cols=25 Identities=12% Similarity=0.093 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhHhhhhhhhccCCCC
Q 038435 70 ILSFYILLESYPIIEGMAWRKDKGQ 94 (118)
Q Consensus 70 ~~~~~vv~~~~Pf~~Gl~~Rkdkg~ 94 (118)
++..-++....|++.---.|..++|
T Consensus 34 m~~si~il~~lP~l~~~~~~s~~~~ 58 (119)
T d1ppjc1 34 LAFSILILALIPLLHTSKQRSMMFR 58 (119)
T ss_dssp HHHHHHGGGTHHHHCCCSSSSSTTC
T ss_pred HHHHHHHHHHHHHHhcccCCCCeeC
Confidence 4445566667787765544555555
No 8
>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.71 E-value=65 Score=19.35 Aligned_cols=37 Identities=11% Similarity=0.045 Sum_probs=20.2
Q ss_pred CceeeecCCCChhhhhhhc-----cceeEeeccceehhHHHH
Q 038435 4 PSFSPTNKLSDDEQVKLHK-----MGKFNFQTSTKFLAPLAT 40 (118)
Q Consensus 4 ~~F~vT~K~~d~~~~~~y~-----~~~f~F~~~S~lfip~tt 40 (118)
..|.+|-|....+++--|. .....|+..++++++.++
T Consensus 80 ~~~~L~I~~~~~~Dsg~YyCa~~~~~~l~Fg~Gt~v~~~~t~ 121 (122)
T d1nezg_ 80 NKYVLTLNKFSKENEGYYFCSVISNSVMYFSSVVPVLQKVSS 121 (122)
T ss_dssp TEEEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEECCCC
T ss_pred CEeEEEEcccccCCCEEEEeeEeCCCCcEECCCeEEEEeeec
Confidence 4466666654443332332 234457777777776543
No 9
>d1j5ja_ g.3.7.2 (A:) Bekm-1 {Lesser asian scorpion (Buthus eupeus) [TaxId: 34648]}
Probab=5.41 E-value=92 Score=15.66 Aligned_cols=11 Identities=9% Similarity=0.338 Sum_probs=9.1
Q ss_pred HhHhhhhhhhc
Q 038435 79 SYPIIEGMAWR 89 (118)
Q Consensus 79 ~~Pf~~Gl~~R 89 (118)
+||.-+.+|++
T Consensus 13 c~pvck~~fgk 23 (36)
T d1j5ja_ 13 CFPVCKSRFGK 23 (36)
T ss_dssp HHHHHHHHTCC
T ss_pred hhHHHHHHcCC
Confidence 68999999953
No 10
>d1a87a_ f.1.1.1 (A:) Colicin N {Escherichia coli [TaxId: 562]}
Probab=5.37 E-value=3.2e+02 Score=19.74 Aligned_cols=18 Identities=11% Similarity=0.255 Sum_probs=9.3
Q ss_pred eEeeccceehhHHHHHHH
Q 038435 26 FNFQTSTKFLAPLATLVM 43 (118)
Q Consensus 26 f~F~~~S~lfip~ttl~l 43 (118)
|+=+.|-|+|+-+-++++
T Consensus 219 ~eTGNWrPL~vklEslaa 236 (297)
T d1a87a_ 219 YNTGNWGPLLLEVESWII 236 (297)
T ss_dssp HTTCCCHHHHHHHHHHHH
T ss_pred ccCCCcHHHHHHHHHHHH
Confidence 334456666555555543
Done!