Query 038436
Match_columns 353
No_of_seqs 95 out of 107
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 11:03:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038436.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038436hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05055 DUF677: Protein of un 100.0 1.8E-91 3.9E-96 684.4 33.4 302 34-344 6-336 (336)
2 PF05633 DUF793: Protein of un 99.7 1.2E-16 2.6E-21 159.1 17.1 269 54-343 65-388 (389)
3 PF03087 DUF241: Arabidopsis p 96.6 0.64 1.4E-05 44.0 22.3 49 76-125 25-73 (231)
4 PF05055 DUF677: Protein of un 91.3 18 0.00038 36.4 22.7 154 81-234 46-227 (336)
5 PF04156 IncA: IncA protein; 84.8 29 0.00063 31.1 15.8 20 183-202 7-26 (191)
6 smart00787 Spc7 Spc7 kinetocho 79.4 70 0.0015 31.8 17.5 53 237-289 135-188 (312)
7 PF05461 ApoL: Apolipoprotein 77.8 78 0.0017 31.5 18.8 15 196-210 107-121 (313)
8 PF04156 IncA: IncA protein; 76.9 55 0.0012 29.3 14.9 20 188-207 5-24 (191)
9 PF14712 Snapin_Pallidin: Snap 70.4 25 0.00054 28.0 7.3 71 102-178 18-89 (92)
10 PF06103 DUF948: Bacterial pro 68.9 51 0.0011 26.1 8.8 20 306-325 64-83 (90)
11 smart00502 BBC B-Box C-termina 68.1 63 0.0014 26.1 10.1 73 268-340 30-102 (127)
12 PF04136 Sec34: Sec34-like fam 67.6 58 0.0013 29.0 9.7 56 80-138 28-86 (157)
13 TIGR02894 DNA_bind_RsfA transc 65.0 88 0.0019 28.3 10.3 42 301-342 116-157 (161)
14 PLN03098 LPA1 LOW PSII ACCUMUL 62.6 28 0.0006 36.4 7.5 26 185-210 195-220 (453)
15 PF08317 Spc7: Spc7 kinetochor 61.4 1.7E+02 0.0038 28.9 18.3 20 98-117 75-94 (325)
16 PF05461 ApoL: Apolipoprotein 58.8 2E+02 0.0043 28.7 12.8 18 211-228 112-129 (313)
17 cd02434 Nodulin-21_like_3 Nodu 57.7 51 0.0011 31.0 7.9 66 256-321 48-120 (225)
18 PF06072 Herpes_US9: Alphaherp 52.9 55 0.0012 24.9 5.7 18 187-204 29-46 (60)
19 PRK11091 aerobic respiration c 52.4 3.4E+02 0.0074 29.5 14.9 37 246-285 86-122 (779)
20 PRK09546 zntB zinc transporter 51.5 2.4E+02 0.0053 27.5 14.7 93 82-177 148-246 (324)
21 cd02433 Nodulin-21_like_2 Nodu 50.4 1.5E+02 0.0033 28.2 9.9 64 256-319 65-135 (234)
22 PF05478 Prominin: Prominin; 48.7 4.3E+02 0.0093 29.6 14.7 77 265-346 212-289 (806)
23 COG5346 Predicted membrane pro 47.2 1.2E+02 0.0025 26.5 7.6 37 144-180 35-76 (136)
24 PF04012 PspA_IM30: PspA/IM30 46.8 2.3E+02 0.0051 25.9 11.0 90 246-335 31-123 (221)
25 PF12761 End3: Actin cytoskele 44.0 2E+02 0.0042 26.9 9.2 84 250-344 108-193 (195)
26 COG5415 Predicted integral mem 42.9 2.8E+02 0.006 26.5 10.0 26 250-280 112-137 (251)
27 PF05597 Phasin: Poly(hydroxya 41.3 1.8E+02 0.0039 25.3 8.2 54 269-323 68-129 (132)
28 KOG0971 Microtubule-associated 40.6 4.1E+02 0.009 30.6 12.3 94 246-341 432-535 (1243)
29 PF05508 Ran-binding: RanGTP-b 40.4 2.6E+02 0.0056 27.9 9.9 69 257-329 72-144 (302)
30 PF01616 Orbi_NS3: Orbivirus N 40.1 3.2E+02 0.0069 25.6 10.2 38 163-200 73-110 (195)
31 PF06103 DUF948: Bacterial pro 40.1 90 0.0019 24.7 5.7 29 266-294 47-75 (90)
32 PF06657 Cep57_MT_bd: Centroso 39.2 1.4E+02 0.0031 23.6 6.6 61 269-329 13-76 (79)
33 PF03511 Fanconi_A: Fanconi an 39.2 34 0.00074 26.2 2.9 37 81-117 12-53 (64)
34 PF12729 4HB_MCP_1: Four helix 38.8 2.3E+02 0.0049 23.5 13.4 61 262-322 68-128 (181)
35 PF04568 IATP: Mitochondrial A 36.0 53 0.0011 27.4 3.8 13 315-327 88-100 (100)
36 PF07730 HisKA_3: Histidine ki 34.1 1.8E+02 0.0039 21.0 8.0 55 272-334 3-57 (68)
37 PF02847 MA3: MA3 domain; Int 33.5 2.5E+02 0.0055 22.5 8.0 79 81-166 4-89 (113)
38 KOG0217 Mismatch repair ATPase 31.2 3.6E+02 0.0078 31.3 10.3 56 269-332 787-842 (1125)
39 cd02435 CCC1 CCC1. CCC1: This 31.2 2.8E+02 0.006 26.5 8.4 63 256-318 66-137 (241)
40 PF09602 PhaP_Bmeg: Polyhydrox 30.8 4.2E+02 0.009 24.2 11.3 39 308-346 83-121 (165)
41 cd07645 I-BAR_IMD_BAIAP2L1 Inv 30.6 4.4E+02 0.0095 25.2 9.4 94 81-179 38-141 (226)
42 PF04108 APG17: Autophagy prot 29.8 6.3E+02 0.014 25.9 15.0 58 14-72 191-253 (412)
43 PF07851 TMPIT: TMPIT-like pro 29.7 1.1E+02 0.0024 30.7 5.6 44 301-345 9-52 (330)
44 PF10168 Nup88: Nuclear pore c 29.7 5.2E+02 0.011 28.8 11.2 27 300-326 689-715 (717)
45 PRK10698 phage shock protein P 29.2 4.8E+02 0.01 24.4 11.0 89 249-337 35-133 (222)
46 PF04222 DUF416: Protein of un 28.8 2E+02 0.0043 26.7 6.7 55 55-110 27-104 (191)
47 PF10112 Halogen_Hydrol: 5-bro 28.6 4.5E+02 0.0096 23.8 9.4 25 313-337 156-180 (199)
48 PF10157 DUF2365: Uncharacteri 27.9 1.2E+02 0.0027 27.0 5.0 24 246-269 96-119 (149)
49 PF09177 Syntaxin-6_N: Syntaxi 27.4 1.2E+02 0.0027 24.4 4.6 27 301-327 37-63 (97)
50 COG0598 CorA Mg2+ and Co2+ tra 27.1 5.8E+02 0.013 25.0 10.2 83 263-349 177-259 (322)
51 PF07889 DUF1664: Protein of u 26.6 4.2E+02 0.0092 23.0 7.9 24 301-324 101-124 (126)
52 PRK11020 hypothetical protein; 26.5 2.7E+02 0.0058 23.9 6.5 50 271-324 3-52 (118)
53 PF05816 TelA: Toxic anion res 26.1 4.7E+02 0.01 25.9 9.4 46 247-292 93-142 (333)
54 PF07243 Phlebovirus_G1: Phleb 26.0 2.4E+02 0.0052 30.2 7.5 16 272-287 477-492 (526)
55 COG4980 GvpP Gas vesicle prote 25.9 4.2E+02 0.0092 22.7 10.4 11 211-221 18-28 (115)
56 PF14723 SSFA2_C: Sperm-specif 25.3 71 0.0015 29.3 3.0 25 305-329 107-131 (179)
57 TIGR02977 phageshock_pspA phag 24.6 5.7E+02 0.012 23.7 11.0 53 252-304 38-90 (219)
58 PF04888 SseC: Secretion syste 23.9 4.2E+02 0.0091 25.6 8.5 11 153-163 22-32 (306)
59 PRK10803 tol-pal system protei 23.8 4.4E+02 0.0096 25.3 8.5 48 249-296 44-91 (263)
60 PRK11085 magnesium/nickel/coba 23.7 7.3E+02 0.016 24.6 10.8 38 312-349 216-253 (316)
61 PF12363 DUF3647: Phage protei 23.5 3.3E+02 0.0071 22.8 6.6 61 58-118 38-109 (113)
62 PF13887 MRF_C1: Myelin gene r 22.6 86 0.0019 21.5 2.3 22 303-324 14-35 (36)
63 cd02432 Nodulin-21_like_1 Nodu 22.0 5.5E+02 0.012 24.0 8.5 56 257-312 54-116 (218)
64 smart00544 MA3 Domain in DAP-5 22.0 4E+02 0.0086 21.4 6.8 79 81-165 4-88 (113)
65 PF10475 DUF2450: Protein of u 21.4 4.9E+02 0.011 25.2 8.3 55 275-340 33-90 (291)
66 cd07646 I-BAR_IMD_IRSp53 Inver 21.2 7.4E+02 0.016 23.8 9.5 94 81-179 40-143 (232)
67 KOG0501 K+-channel KCNQ [Inorg 21.2 3.4E+02 0.0074 29.9 7.5 61 150-215 308-369 (971)
68 PF12711 Kinesin-relat_1: Kine 21.1 3.4E+02 0.0073 22.1 5.9 28 269-296 27-54 (86)
69 PF11239 DUF3040: Protein of u 20.7 3.6E+02 0.0077 21.1 6.0 27 192-218 46-74 (82)
70 PF14555 UBA_4: UBA-like domai 20.7 1.8E+02 0.0039 19.9 3.8 33 57-93 6-40 (43)
71 KOG4191 Histone acetyltransfer 20.3 4.7E+02 0.01 27.7 8.1 75 259-339 394-468 (516)
72 KOG0976 Rho/Rac1-interacting s 20.2 4.7E+02 0.01 29.8 8.4 75 263-337 295-371 (1265)
No 1
>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants. This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].
Probab=100.00 E-value=1.8e-91 Score=684.40 Aligned_cols=302 Identities=37% Similarity=0.534 Sum_probs=282.6
Q ss_pred HHHHhhhhh--cccccCCC-CCCchhhhHHhhhhccCCChHHHHHHHhh-------hhHHHHHHHHHHhhHHHHHHHHHH
Q 038436 34 SKAQSQLAA--RTSFNGLS-STSSVSFYVHLSDYLLEPQQETLMKMIER-------LHFHHLLMDYFEASVEAYNVCQLL 103 (353)
Q Consensus 34 ~~~~~~~~~--~s~~~~~~-~~~s~~s~~~~~~~LLep~qe~v~~il~~-------~~l~~Lv~~YFd~S~~a~~~C~~L 103 (353)
+.+|++||+ +|++.|.. +++|+|||++|++||||||||||++||++ |+|++||++|||+|++||+||++|
T Consensus 6 ~~l~~~t~~~i~sl~~~~~~~s~s~~s~~~~t~~Lle~~Qevv~~ile~~~di~~~~~L~~Lv~~YFd~S~~a~~~C~~L 85 (336)
T PF05055_consen 6 SSLQERTNRVISSLATGVETRSLSFDSLKEVTECLLEMNQEVVKVILECKKDIWKNPELFRLVSDYFDSSLEASDFCEAL 85 (336)
T ss_pred HHHHHHHHHHHHHhhhccccCCCChHHHHHHHHHHhCCChHHHHHHHHHHHHhhcChhHHHHHHHHHHhhHHHHHHHHHH
Confidence 348899998 67777764 44579999999999999999999999997 899999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHhcccccc----------hHHHHHHHhhhhhcCCCCChh-hHHHHHHHHhchHHHHHHHHhh
Q 038436 104 LRSVHQTRANYRRIQRVMKISENMHD----------CRATFKHLAAFASSKNPLSII-SMVQFRDYHHGKMLLFSSLTSK 172 (353)
Q Consensus 104 ~~~I~~aR~~~~~i~~aL~~~~~~~~----------~~~~~~eL~~F~~~~nPF~~~-~~~~F~~v~~~~~~Ll~~L~~~ 172 (353)
++||++||.+|++|+++|++|+.++. |.+|+++|++|++++|||+.+ ++.+||+||++|++||++|+++
T Consensus 86 ~k~I~~aR~~~~~I~~al~~~~~e~~~~d~g~~~~~~~~tl~eL~~F~~~~NPFs~~~~~~~F~~i~~~~~~Ll~kL~~~ 165 (336)
T PF05055_consen 86 LKCIHRARDNYLPIRRALKQFEKESLDTDVGVSQKKYDKTLEELKKFKAAGNPFSDEEFFHQFQSIHDQQSSLLEKLDSR 165 (336)
T ss_pred HHHHHHHHHHhHHHHHHHHhhhhccccccccccchhHHHHHHHHHhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999977641 789999999999999999998 9999999999999999999999
Q ss_pred hHHHHHHhhhhHHHhhhhhhhHHHHHHHHHHHHHHHHHH------HHHHHhhcccc-cccchHHHHHHHHHhhhcCCcch
Q 038436 173 GKKIRRRAKFNKLLKKVGAYSLVISQTALLIALLVFVLH------SMVGIVAAPGL-MVPCLALFQRKLTKLVRRGPKTS 245 (353)
Q Consensus 173 k~K~~~Klk~~r~~~~vs~~~~vaa~~~v~i~~vv~aah------a~a~l~a~P~~-~~~~~~~l~k~l~~~~~~~~~~~ 245 (353)
|+|+++|+|++|+|+++|++|||+++++|+|+++|+|+| +++|++++|++ +|.|++++|++ |++
T Consensus 166 k~Kl~kklk~~r~~~kvs~v~fvaa~~aV~i~svv~aa~a~~~vv~~aa~~a~P~~~~gkw~~~~~~k---~~~------ 236 (336)
T PF05055_consen 166 KKKLRKKLKLVRTWRKVSNVCFVAAFVAVAIASVVAAAHAVPAVVALAAALAAPIGSVGKWCGSLWKK---YEE------ 236 (336)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHccchHHHhHHHHHHHHH---HHH------
Confidence 999999999999999999999999999999999999886 34555667876 56699999988 776
Q ss_pred HHHHHHHHHHHhhhhhhhhhcccccHHHHHHHHHHHHHhhHHHHHHHHHcCCchH-HHHHHHHHHhchhhHHHHHHHHHH
Q 038436 246 LLQKFAAQLDVAAKGVYILVNDFDTISRMVRRLYDEVEHRKDIARMCFRSGNSEI-LKEVMKEFHMHESSFLEQLKELED 324 (353)
Q Consensus 246 ~l~k~~~qld~aakGtyil~~DldTIs~LV~RL~deIe~~~~~v~fav~~~~~~~-vk~vv~elkk~~~~f~~qleeLee 324 (353)
+|+++++|+|+|+|||||+++||||||+||+||+|+|||++++|+||+++++++. +++||+||+|++++|++|||||||
T Consensus 237 al~~~~~~l~~aakGtyI~~~DldTIsrLV~RL~deIE~~~~~v~fave~~~d~~~vk~vv~el~k~~~~f~~qleELee 316 (336)
T PF05055_consen 237 ALKKQKEQLDAAAKGTYILIKDLDTISRLVDRLEDEIEHMKALVDFAVERGEDEEAVKEVVKELKKNVESFTEQLEELEE 316 (336)
T ss_pred HHHHHHHHHHHHHhccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999998775 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 038436 325 HICLCFLTINRSRRLVLQEI 344 (353)
Q Consensus 325 hv~lC~~tInraR~lVl~~I 344 (353)
|||+||+||||||++|||+|
T Consensus 317 hv~lC~~tInrAR~lVlq~I 336 (336)
T PF05055_consen 317 HVYLCFKTINRARTLVLQEI 336 (336)
T ss_pred HHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999998
No 2
>PF05633 DUF793: Protein of unknown function (DUF793); InterPro: IPR008511 This entry includes Protein BYPASS 1 which is required for normal root and shoot development. Prevents constitutive production of a root mobile carotenoid-derived signaling compound that is capable of arresting shoot and leaf development [, ].
Probab=99.72 E-value=1.2e-16 Score=159.09 Aligned_cols=269 Identities=16% Similarity=0.180 Sum_probs=194.2
Q ss_pred chhhhHHhhhhccCCChHHHHHHHhh-------hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccc
Q 038436 54 SVSFYVHLSDYLLEPQQETLMKMIER-------LHFHHLLMDYFEASVEAYNVCQLLLRSVHQTRANYRRIQRVMKISEN 126 (353)
Q Consensus 54 s~~s~~~~~~~LLep~qe~v~~il~~-------~~l~~Lv~~YFd~S~~a~~~C~~L~~~I~~aR~~~~~i~~aL~~~~~ 126 (353)
|++=.+.+.+.++.=..|.=..|.+. |.+++||.+|||.|.|++|+|+++...|.+.|..|+.++-|++.++.
T Consensus 65 SL~W~~~~ld~~l~~~~efr~li~~~~~~~~s~~~~dk~v~eylD~sVKlLDvCNA~~~gi~~lr~~~~ll~~al~~L~~ 144 (389)
T PF05633_consen 65 SLSWMRKALDSFLCCHEEFRALITNLRDLPLSKPPDDKWVDEYLDRSVKLLDVCNAIRDGISQLRQWQLLLQIALHALDS 144 (389)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 56666777777776555544333332 56899999999999999999999999999999999999999999976
Q ss_pred ccc-----hHHHHHHHhhhhhcC--C-----------------------CCCh----hhHHHHHH------HHhchHHHH
Q 038436 127 MHD-----CRATFKHLAAFASSK--N-----------------------PLSI----ISMVQFRD------YHHGKMLLF 166 (353)
Q Consensus 127 ~~~-----~~~~~~eL~~F~~~~--n-----------------------PF~~----~~~~~F~~------v~~~~~~Ll 166 (353)
..+ +.++...|.++..+. + +-+. .....|++ -.=.++.+|
T Consensus 145 ~~~~~~~~~rRAr~aL~dl~~~~~~~~~~~~~~~~~rnrs~~r~~~~~~~~~~s~~~~~~~~~rsls~~vsr~wsa~~~L 224 (389)
T PF05633_consen 145 SRPLGEGQLRRARKALSDLKIAMLDDKDSGSSGGSHRNRSFGRSNSSGRRSSSSSGSRSAGHFRSLSWSVSRNWSAARQL 224 (389)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHhcccccCcccccccccccccccCCCCCCCCccccCCcccchhhhhhhhhhhhhHHHH
Confidence 522 666666666654211 0 0000 11223432 223455555
Q ss_pred HHHHhhhHHHHHHhhhhHHHh-----hhhhhhHHHHHHHHHHHHHHHHHH-HH-HHHhhcccccccchHHHHHHHHHhhh
Q 038436 167 SSLTSKGKKIRRRAKFNKLLK-----KVGAYSLVISQTALLIALLVFVLH-SM-VGIVAAPGLMVPCLALFQRKLTKLVR 239 (353)
Q Consensus 167 ~~L~~~k~K~~~Klk~~r~~~-----~vs~~~~vaa~~~v~i~~vv~aah-a~-a~l~a~P~~~~~~~~~l~k~l~~~~~ 239 (353)
+. +...|-.+|.-. .+-..+|+..+++|+||++++||- .- -|+.+ -.+ ..-+. |.|
T Consensus 225 q~-------m~~nL~~Pk~~esak~~gL~~A~Y~m~~vtvFV~~vlVAA~pc~~rgL~~-----~l~--~vP~~---~~W 287 (389)
T PF05633_consen 225 QA-------MGENLVLPKGKESAKGRGLLRAMYGMKSVTVFVCWVLVAAFPCQDRGLQV-----HLS--AVPRQ---FSW 287 (389)
T ss_pred HH-------HHhcCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHeeecCCccccC-----CCC--CCccc---ccc
Confidence 55 666666655443 345789999999999999988763 00 01111 011 00123 445
Q ss_pred cCCcchHHHHHHHHHHHhh-hhhhhhhcccccHHHHHHHHHHHHHhhHHHHHHHHHcCCchHHHHHHHHHHhchhhHHHH
Q 038436 240 RGPKTSLLQKFAAQLDVAA-KGVYILVNDFDTISRMVRRLYDEVEHRKDIARMCFRSGNSEILKEVMKEFHMHESSFLEQ 318 (353)
Q Consensus 240 ~~~~~~~l~k~~~qld~aa-kGtyil~~DldTIs~LV~RL~deIe~~~~~v~fav~~~~~~~vk~vv~elkk~~~~f~~q 318 (353)
+.+-...++++.+.++... ||...+.++|+.|.+.|++|++-++. ++|.++.++.+.+++.++||.+..+.+.+.
T Consensus 288 A~s~~~LQ~rI~eEikkk~~kgs~gLLkEl~~ve~~vr~L~el~d~----~~~p~~~e~~~ev~~~V~EL~~~~~~L~~G 363 (389)
T PF05633_consen 288 APSFISLQERINEEIKKKERKGSCGLLKELQQVEASVRELHELIDS----FQFPLEEEKEEEVREAVEELARVCEALSQG 363 (389)
T ss_pred chHHHHHHHHHHHHHhhccccCcchHHHHHHHHHHHHHHHHHHHHh----ccCCcchhHHHHHHHHHHHHHHHHHHHHcc
Confidence 4444556778999999876 77999999999999999999977774 467777776667999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 038436 319 LKELEDHICLCFLTINRSRRLVLQE 343 (353)
Q Consensus 319 leeLeehv~lC~~tInraR~lVl~~ 343 (353)
|+.||.+|+.-|+.|-++|+-+|.-
T Consensus 364 LdpLerqVre~Fh~IV~sR~elLd~ 388 (389)
T PF05633_consen 364 LDPLERQVREVFHRIVRSRTELLDS 388 (389)
T ss_pred cHHHHHHHHHHHHHHHHhhHHHHhc
Confidence 9999999999999999999998863
No 3
>PF03087 DUF241: Arabidopsis protein of unknown function; InterPro: IPR004320 This family represents plant proteins of unknown function.
Probab=96.63 E-value=0.64 Score=43.96 Aligned_cols=49 Identities=8% Similarity=0.291 Sum_probs=42.7
Q ss_pred HHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcc
Q 038436 76 MIERLHFHHLLMDYFEASVEAYNVCQLLLRSVHQTRANYRRIQRVMKISE 125 (353)
Q Consensus 76 il~~~~l~~Lv~~YFd~S~~a~~~C~~L~~~I~~aR~~~~~i~~aL~~~~ 125 (353)
.|.++. ..+|++..|.|..-+|+|+.-...+-+.+.+.+-+|.+|..=+
T Consensus 25 al~~~~-~k~ve~lLd~sL~LLD~c~~~rd~ll~lKe~v~eLqsalRRr~ 73 (231)
T PF03087_consen 25 ALSHHQ-EKWVEELLDGSLRLLDACGTFRDALLQLKEHVQELQSALRRRD 73 (231)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 344444 7899999999999999999999999999999999998887754
No 4
>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants. This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].
Probab=91.28 E-value=18 Score=36.42 Aligned_cols=154 Identities=10% Similarity=0.092 Sum_probs=72.3
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcccc-cchHHHHHHHhhhhhcCCCCC---------h-
Q 038436 81 HFHHLLMDYFEASVEAYNVCQLLLRSVHQTRANYRRIQRVMKISENM-HDCRATFKHLAAFASSKNPLS---------I- 149 (353)
Q Consensus 81 ~l~~Lv~~YFd~S~~a~~~C~~L~~~I~~aR~~~~~i~~aL~~~~~~-~~~~~~~~eL~~F~~~~nPF~---------~- 149 (353)
++=..+.+|=++=.+-.++-..+....+....-...=..++++++.- ..|..+...|+.|..-..|-+ .
T Consensus 46 evv~~ile~~~di~~~~~L~~Lv~~YFd~S~~a~~~C~~L~k~I~~aR~~~~~I~~al~~~~~e~~~~d~g~~~~~~~~t 125 (336)
T PF05055_consen 46 EVVKVILECKKDIWKNPELFRLVSDYFDSSLEASDFCEALLKCIHRARDNYLPIRRALKQFEKESLDTDVGVSQKKYDKT 125 (336)
T ss_pred HHHHHHHHHHHHhhcChhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhccccccccccchhHHHH
Confidence 44444444433333445555555555555544443333333443221 237778888888865543321 0
Q ss_pred -hhHHHHH--------H-HHhchHHHHHHHHhhhHHHHHHh-hhhHHHhhhhhhhHHHHHHHH-HHHHHHHHHHHHHHHh
Q 038436 150 -ISMVQFR--------D-YHHGKMLLFSSLTSKGKKIRRRA-KFNKLLKKVGAYSLVISQTAL-LIALLVFVLHSMVGIV 217 (353)
Q Consensus 150 -~~~~~F~--------~-v~~~~~~Ll~~L~~~k~K~~~Kl-k~~r~~~~vs~~~~vaa~~~v-~i~~vv~aaha~a~l~ 217 (353)
.-...|. . ...++.++-++-.+..+|++.+- |+-|..|.+...--+++..-| +.++|++++.++++.+
T Consensus 126 l~eL~~F~~~~NPFs~~~~~~~F~~i~~~~~~Ll~kL~~~k~Kl~kklk~~r~~~kvs~v~fvaa~~aV~i~svv~aa~a 205 (336)
T PF05055_consen 126 LEELKKFKAAGNPFSDEEFFHQFQSIHDQQSSLLEKLDSRKKKLRKKLKLVRTWRKVSNVCFVAAFVAVAIASVVAAAHA 205 (336)
T ss_pred HHHHHhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 1112221 1 45666666666666666666433 233344444333333222222 2223334444445442
Q ss_pred hc-----ccccccchHHHHHHH
Q 038436 218 AA-----PGLMVPCLALFQRKL 234 (353)
Q Consensus 218 a~-----P~~~~~~~~~l~k~l 234 (353)
+. |+.+++|+++++||+
T Consensus 206 ~~~vv~~aa~~a~P~~~~gkw~ 227 (336)
T PF05055_consen 206 VPAVVALAAALAAPIGSVGKWC 227 (336)
T ss_pred hhHHHHHHHHHccchHHHhHHH
Confidence 22 223447888888883
No 5
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=84.75 E-value=29 Score=31.12 Aligned_cols=20 Identities=20% Similarity=0.122 Sum_probs=8.9
Q ss_pred hHHHhhhhhhhHHHHHHHHH
Q 038436 183 NKLLKKVGAYSLVISQTALL 202 (353)
Q Consensus 183 ~r~~~~vs~~~~vaa~~~v~ 202 (353)
+.....+.+++++++.++.+
T Consensus 7 ~~i~~iilgilli~~gI~~L 26 (191)
T PF04156_consen 7 ISIILIILGILLIASGIAAL 26 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444555444444443
No 6
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=79.40 E-value=70 Score=31.80 Aligned_cols=53 Identities=9% Similarity=0.109 Sum_probs=31.8
Q ss_pred hhhcCCcchH-HHHHHHHHHHhhhhhhhhhcccccHHHHHHHHHHHHHhhHHHH
Q 038436 237 LVRRGPKTSL-LQKFAAQLDVAAKGVYILVNDFDTISRMVRRLYDEVEHRKDIA 289 (353)
Q Consensus 237 ~~~~~~~~~~-l~k~~~qld~aakGtyil~~DldTIs~LV~RL~deIe~~~~~v 289 (353)
|+||...+.. ...+.+.++.|...--.+.+++.-++.++..|.+.-+..+.-+
T Consensus 135 YeWR~kllegLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~ 188 (312)
T smart00787 135 YEWRMKLLEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEEL 188 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554332222 2334456666777777788888888888776665544444433
No 7
>PF05461 ApoL: Apolipoprotein L; InterPro: IPR008405 Apo L belongs to the high density lipoprotein family that plays a central role in cholesterol transport. The cholesterol content of membranes is important in cellular processes such as modulating gene transcription and signal transduction both in the adult brain and during neurodevelopment. There are six apo L genes located in close proximity to each other on chromosome 22q12 in humans. 22q12 is a confirmed high-susceptibility locus for schizophrenia and close to the region associated with velocardiofacial syndrome that includes symptoms of schizophrenia []. The various functions of apoL are still not entirely clear. Apolipoprotein L-I has been identified as a trypanolytic agent [] and displays similar phylogenetic distribution to the programmed cell death protein Bcl-2 and BH-3 domain-containing proteins, suggesting a possible role in apoptosis [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region
Probab=77.84 E-value=78 Score=31.49 Aligned_cols=15 Identities=20% Similarity=0.018 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHH
Q 038436 196 ISQTALLIALLVFVL 210 (353)
Q Consensus 196 aa~~~v~i~~vv~aa 210 (353)
++.+++.|.+++.||
T Consensus 107 ~vsGilsIlGLaLAP 121 (313)
T PF05461_consen 107 AVSGILSILGLALAP 121 (313)
T ss_pred HHhhHHHHHhHHhcc
Confidence 333444444444443
No 8
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=76.90 E-value=55 Score=29.30 Aligned_cols=20 Identities=15% Similarity=0.197 Sum_probs=9.6
Q ss_pred hhhhhhHHHHHHHHHHHHHH
Q 038436 188 KVGAYSLVISQTALLIALLV 207 (353)
Q Consensus 188 ~vs~~~~vaa~~~v~i~~vv 207 (353)
++.+++++++...+++++++
T Consensus 5 ~i~~i~~iilgilli~~gI~ 24 (191)
T PF04156_consen 5 RIISIILIILGILLIASGIA 24 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44445554444444544444
No 9
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=70.44 E-value=25 Score=27.95 Aligned_cols=71 Identities=11% Similarity=0.173 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHhhHHHHHHHHhcccccchHHHHHHHhhhhhcCCCCCh-hhHHHHHHHHhchHHHHHHHHhhhHHHHH
Q 038436 102 LLLRSVHQTRANYRRIQRVMKISENMHDCRATFKHLAAFASSKNPLSI-ISMVQFRDYHHGKMLLFSSLTSKGKKIRR 178 (353)
Q Consensus 102 ~L~~~I~~aR~~~~~i~~aL~~~~~~~~~~~~~~eL~~F~~~~nPF~~-~~~~~F~~v~~~~~~Ll~~L~~~k~K~~~ 178 (353)
.+...|+.++.+|..+...|..... -+.++.......+||+. ++......+..+-..+-.+++.-++++.+
T Consensus 18 ~~~~~l~el~~sQ~~L~~~i~~~~~------~L~~~~~~~~~~~~~~~~~y~~KL~~ikkrm~~l~~~l~~lk~R~~~ 89 (92)
T PF14712_consen 18 RLDQQLQELRQSQEELLQQIDRLNE------KLKELNEVEQINEPFDLDPYVKKLVNIKKRMSNLHERLQKLKKRADK 89 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3467888899999888877765411 23444443344458865 56666788888888888888877777653
No 10
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=68.88 E-value=51 Score=26.10 Aligned_cols=20 Identities=15% Similarity=0.204 Sum_probs=8.4
Q ss_pred HHHHhchhhHHHHHHHHHHH
Q 038436 306 KEFHMHESSFLEQLKELEDH 325 (353)
Q Consensus 306 ~elkk~~~~f~~qleeLeeh 325 (353)
+.-.++...+.+.++++++-
T Consensus 64 ~~k~~~v~~~~~~v~~~g~~ 83 (90)
T PF06103_consen 64 NEKLEKVDPVFEAVADLGES 83 (90)
T ss_pred HHHHHhHHHHHHHHHHHHHH
Confidence 33333334444444444443
No 11
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=68.10 E-value=63 Score=26.10 Aligned_cols=73 Identities=11% Similarity=0.116 Sum_probs=43.0
Q ss_pred cccHHHHHHHHHHHHHhhHHHHHHHHHcCCchHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038436 268 FDTISRMVRRLYDEVEHRKDIARMCFRSGNSEILKEVMKEFHMHESSFLEQLKELEDHICLCFLTINRSRRLV 340 (353)
Q Consensus 268 ldTIs~LV~RL~deIe~~~~~v~fav~~~~~~~vk~vv~elkk~~~~f~~qleeLeehv~lC~~tInraR~lV 340 (353)
...+..-+......|..-..-..-+++..+...+.++=++-+.....+..+++.|+.++..-..+|..+..++
T Consensus 30 ~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~~l~~l~~~~~~~e~~l 102 (127)
T smart00502 30 IQEVEENAADVEAQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESLTQKQEKLSHAINFTEEAL 102 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444443333334455444455555555666667888888888888887777777776654
No 12
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=67.61 E-value=58 Score=29.00 Aligned_cols=56 Identities=16% Similarity=0.211 Sum_probs=45.6
Q ss_pred hhHHHHHHHHHHhhHHHHHH---HHHHHHHHHHHHHhhHHHHHHHHhcccccchHHHHHHHh
Q 038436 80 LHFHHLLMDYFEASVEAYNV---CQLLLRSVHQTRANYRRIQRVMKISENMHDCRATFKHLA 138 (353)
Q Consensus 80 ~~l~~Lv~~YFd~S~~a~~~---C~~L~~~I~~aR~~~~~i~~aL~~~~~~~~~~~~~~eL~ 138 (353)
..|..|...|-..|.+|..| |+.|+.-=.+-..-...|..-|+.|+. .+.+.+.|+
T Consensus 28 ~~l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~---Ld~itr~Ln 86 (157)
T PF04136_consen 28 DQLDELQEQYNSVSEKTNSLHEACEQLLEEQTRLEELAEEISEKLQYFEE---LDPITRRLN 86 (157)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhh---HHHHHHHHc
Confidence 46889999999999999887 999999988888889999999998854 334555554
No 13
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=65.03 E-value=88 Score=28.33 Aligned_cols=42 Identities=17% Similarity=0.283 Sum_probs=34.0
Q ss_pred HHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038436 301 LKEVMKEFHMHESSFLEQLKELEDHICLCFLTINRSRRLVLQ 342 (353)
Q Consensus 301 vk~vv~elkk~~~~f~~qleeLeehv~lC~~tInraR~lVl~ 342 (353)
++.-+++|.+....+.+.+..++|--..-+..++|||.+++-
T Consensus 116 l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RARkl~~~ 157 (161)
T TIGR02894 116 LQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRARKLAVV 157 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 556677777777777777777788888899999999998864
No 14
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=62.63 E-value=28 Score=36.44 Aligned_cols=26 Identities=19% Similarity=0.100 Sum_probs=19.1
Q ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHH
Q 038436 185 LLKKVGAYSLVISQTALLIALLVFVL 210 (353)
Q Consensus 185 ~~~~vs~~~~vaa~~~v~i~~vv~aa 210 (353)
-+|.+--++|++-+++..|.++|+++
T Consensus 195 PfR~~R~f~y~a~~asa~ig~~i~~~ 220 (453)
T PLN03098 195 PFRGVRKFFYVAFTAAAGISTFFTVP 220 (453)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677888888888887777764
No 15
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=61.43 E-value=1.7e+02 Score=28.86 Aligned_cols=20 Identities=20% Similarity=0.400 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHhhHHH
Q 038436 98 NVCQLLLRSVHQTRANYRRI 117 (353)
Q Consensus 98 ~~C~~L~~~I~~aR~~~~~i 117 (353)
..|..|.+.|.+.|....-+
T Consensus 75 ~~c~EL~~~I~egr~~~~~~ 94 (325)
T PF08317_consen 75 FSCRELKKYISEGRQIFEEI 94 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 57999999999887764444
No 16
>PF05461 ApoL: Apolipoprotein L; InterPro: IPR008405 Apo L belongs to the high density lipoprotein family that plays a central role in cholesterol transport. The cholesterol content of membranes is important in cellular processes such as modulating gene transcription and signal transduction both in the adult brain and during neurodevelopment. There are six apo L genes located in close proximity to each other on chromosome 22q12 in humans. 22q12 is a confirmed high-susceptibility locus for schizophrenia and close to the region associated with velocardiofacial syndrome that includes symptoms of schizophrenia []. The various functions of apoL are still not entirely clear. Apolipoprotein L-I has been identified as a trypanolytic agent [] and displays similar phylogenetic distribution to the programmed cell death protein Bcl-2 and BH-3 domain-containing proteins, suggesting a possible role in apoptosis [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region
Probab=58.76 E-value=2e+02 Score=28.66 Aligned_cols=18 Identities=33% Similarity=0.357 Sum_probs=12.9
Q ss_pred HHHHHHhhcccccccchH
Q 038436 211 HSMVGIVAAPGLMVPCLA 228 (353)
Q Consensus 211 ha~a~l~a~P~~~~~~~~ 228 (353)
.++.|++-+|.-+|.++.
T Consensus 112 lsIlGLaLAPvT~G~SL~ 129 (313)
T PF05461_consen 112 LSILGLALAPVTAGGSLA 129 (313)
T ss_pred HHHHhHHhccccccchHH
Confidence 466777778877777763
No 17
>cd02434 Nodulin-21_like_3 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_3: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=57.66 E-value=51 Score=31.04 Aligned_cols=66 Identities=18% Similarity=0.246 Sum_probs=38.6
Q ss_pred Hhhhhhhhhhc-ccccHHHHHHHHHHHHHhhH-----HHHHHHHHcCCch-HHHHHHHHHHhchhhHHHHHHH
Q 038436 256 VAAKGVYILVN-DFDTISRMVRRLYDEVEHRK-----DIARMCFRSGNSE-ILKEVMKEFHMHESSFLEQLKE 321 (353)
Q Consensus 256 ~aakGtyil~~-DldTIs~LV~RL~deIe~~~-----~~v~fav~~~~~~-~vk~vv~elkk~~~~f~~qlee 321 (353)
+|+-|.|+-.+ +-|...+..+|-..++++.. .+.+.-..++-.+ ..+.+++++-++.+.|.+.+-.
T Consensus 48 SMa~GeYls~kse~d~~~~e~~re~~~i~~~pe~E~~el~~iy~~kG~~~~~a~~v~~~l~~~~~~~~~~m~~ 120 (225)
T cd02434 48 SMAAGEYVSTKAERDFLHSEKKREEWEIENYPEGEKSEMVEIYSLKGLSEEVADQVVELLSKYRKLFVDIMMT 120 (225)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCchhhHHHHHH
Confidence 35555555444 35556666666666665432 2334333443333 3778888898888887775544
No 18
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=52.86 E-value=55 Score=24.90 Aligned_cols=18 Identities=6% Similarity=0.165 Sum_probs=8.9
Q ss_pred hhhhhhhHHHHHHHHHHH
Q 038436 187 KKVGAYSLVISQTALLIA 204 (353)
Q Consensus 187 ~~vs~~~~vaa~~~v~i~ 204 (353)
|+...++.+++++.+++|
T Consensus 29 rRrc~~~v~~v~~~~~~c 46 (60)
T PF06072_consen 29 RRRCRLAVAIVFAVVALC 46 (60)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555554444444443
No 19
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=52.36 E-value=3.4e+02 Score=29.48 Aligned_cols=37 Identities=19% Similarity=0.256 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhhhhhhhhhcccccHHHHHHHHHHHHHhh
Q 038436 246 LLQKFAAQLDVAAKGVYILVNDFDTISRMVRRLYDEVEHR 285 (353)
Q Consensus 246 ~l~k~~~qld~aakGtyil~~DldTIs~LV~RL~deIe~~ 285 (353)
.+.+....++.+..|-+-++.++ ...+++|..+++..
T Consensus 86 ~l~~~~~~l~~~~~~~~~~~~~l---~~~~~~l~~~~~~~ 122 (779)
T PRK11091 86 RLSRLVAKLEEMRERDLELNVQL---KDNIAQLNQEIAER 122 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 35566777777777776666665 55666666666543
No 20
>PRK09546 zntB zinc transporter; Reviewed
Probab=51.50 E-value=2.4e+02 Score=27.51 Aligned_cols=93 Identities=15% Similarity=0.054 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHH----HHhhHHHHHHHHhcccc-cchHHHHHHHhhhhhcCCC-CChhhHHHH
Q 038436 82 FHHLLMDYFEASVEAYNVCQLLLRSVHQT----RANYRRIQRVMKISENM-HDCRATFKHLAAFASSKNP-LSIISMVQF 155 (353)
Q Consensus 82 l~~Lv~~YFd~S~~a~~~C~~L~~~I~~a----R~~~~~i~~aL~~~~~~-~~~~~~~~eL~~F~~~~nP-F~~~~~~~F 155 (353)
+..++..||+.-.+.-+=...|+..|.+- +..-..+++-+-.+... .+...++..|. ...+| ++.+....|
T Consensus 148 ld~ivd~~~~~l~~i~~~ld~lE~~l~~~~~~~~~~l~~lrr~l~~lrr~l~p~~~~l~~L~---~~~~~~~~~~~~~~l 224 (324)
T PRK09546 148 CDALTDHASEFIEELHDKIIDLEDNLLDQQIPPRGELALLRKQLIVMRRYMAPQRDVFARLA---SERLPWMSDDDRRRM 224 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCcccChHHHHHH
Confidence 45777788888777777777776666321 11111122222222111 11223344443 33444 455667789
Q ss_pred HHHHhchHHHHHHHHhhhHHHH
Q 038436 156 RDYHHGKMLLFSSLTSKGKKIR 177 (353)
Q Consensus 156 ~~v~~~~~~Ll~~L~~~k~K~~ 177 (353)
++++++...+++.+++.+..+.
T Consensus 225 ~Dv~d~~~~~~~~l~~~~~~~~ 246 (324)
T PRK09546 225 QDIADRLGRGLDDLDACIARTA 246 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998888888877766443
No 21
>cd02433 Nodulin-21_like_2 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_2: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=50.43 E-value=1.5e+02 Score=28.15 Aligned_cols=64 Identities=19% Similarity=0.227 Sum_probs=40.8
Q ss_pred Hhhhhhhhhhc-ccccHHHHHHHHHHHHHh-----hHHHHHHHHHcCCch-HHHHHHHHHHhchhhHHHHH
Q 038436 256 VAAKGVYILVN-DFDTISRMVRRLYDEVEH-----RKDIARMCFRSGNSE-ILKEVMKEFHMHESSFLEQL 319 (353)
Q Consensus 256 ~aakGtyil~~-DldTIs~LV~RL~deIe~-----~~~~v~fav~~~~~~-~vk~vv~elkk~~~~f~~ql 319 (353)
+|+-|-|+-.+ +-|.+...++|=+.++++ ...++++-.++|-++ ..+.+++++.++.+.|.+.+
T Consensus 65 SMa~GeYls~kse~d~~~~~~~re~~~i~~~p~~e~~el~~iy~~~G~~~~~a~~~~~~l~~~~~~~~~~~ 135 (234)
T cd02433 65 SMAAGEYVSVTSQRELLEASIPDERRELRKHPLEEAAELALIYRAKGLDEEEAKRVASQLMNDPEQALDTL 135 (234)
T ss_pred HHHhhhhhhhhhHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCcchhHHHH
Confidence 46666666555 366666667776666654 334555555555444 37888899988877776543
No 22
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=48.72 E-value=4.3e+02 Score=29.58 Aligned_cols=77 Identities=16% Similarity=0.106 Sum_probs=38.3
Q ss_pred hcccccHHHH-HHHHHHHHHhhHHHHHHHHHcCCchHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038436 265 VNDFDTISRM-VRRLYDEVEHRKDIARMCFRSGNSEILKEVMKEFHMHESSFLEQLKELEDHICLCFLTINRSRRLVLQE 343 (353)
Q Consensus 265 ~~DldTIs~L-V~RL~deIe~~~~~v~fav~~~~~~~vk~vv~elkk~~~~f~~qleeLeehv~lC~~tInraR~lVl~~ 343 (353)
..|||++..+ ..+++++++.... -.+++-.. +...|++.+.........+++|-+.....-..++..|+-+..-
T Consensus 212 ~~~L~~~~~~lg~~i~~~l~~~~~---~~L~~i~~--l~~~~~~~~~~L~~v~~~~~~L~~~~~qL~~~L~~vK~~L~~~ 286 (806)
T PF05478_consen 212 SSDLDNIGSLLGGDIQDQLGSNVY---PALDSILD--LAQAMQETKELLQNVNSSLKDLQEYQSQLRDGLRGVKRDLNNT 286 (806)
T ss_pred HHHHHhccchhhHHHHHHHhhhhH---HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777654 4566666653322 22222110 2225555555555555555555555555555555555555444
Q ss_pred Hhh
Q 038436 344 IMV 346 (353)
Q Consensus 344 I~~ 346 (353)
+..
T Consensus 287 l~~ 289 (806)
T PF05478_consen 287 LQD 289 (806)
T ss_pred HHh
Confidence 443
No 23
>COG5346 Predicted membrane protein [Function unknown]
Probab=47.22 E-value=1.2e+02 Score=26.53 Aligned_cols=37 Identities=11% Similarity=0.067 Sum_probs=29.5
Q ss_pred CCCCCh-hhHHHHHHHH----hchHHHHHHHHhhhHHHHHHh
Q 038436 144 KNPLSI-ISMVQFRDYH----HGKMLLFSSLTSKGKKIRRRA 180 (353)
Q Consensus 144 ~nPF~~-~~~~~F~~v~----~~~~~Ll~~L~~~k~K~~~Kl 180 (353)
..|+++ ...+++.+|+ ++.+-|-+|=+..|.++++|.
T Consensus 35 ~~~LPpp~~l~qYnsI~pnt~~rimaMAekEQahrH~~~~k~ 76 (136)
T COG5346 35 EHILPPPDLLSQYNSIYPNTLQRIMAMAEKEQAHRHAIDLKN 76 (136)
T ss_pred cccCCCHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 347776 4578888887 567889999999999999884
No 24
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=46.77 E-value=2.3e+02 Score=25.94 Aligned_cols=90 Identities=13% Similarity=0.260 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHhhhhhhhhhcccccHHHHHHHHHHHHHhhHHHHHHHHHcCCchHHHHHHH---HHHhchhhHHHHHHHH
Q 038436 246 LLQKFAAQLDVAAKGVYILVNDFDTISRMVRRLYDEVEHRKDIARMCFRSGNSEILKEVMK---EFHMHESSFLEQLKEL 322 (353)
Q Consensus 246 ~l~k~~~qld~aakGtyil~~DldTIs~LV~RL~deIe~~~~~v~fav~~~~~~~vk~vv~---elkk~~~~f~~qleeL 322 (353)
.+....+++..+.++.--+.-.-..+.+-++.+..+++.+-.-+..|+..|++..-++.+. ++......+..+++.+
T Consensus 31 ~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~~~~~~~ 110 (221)
T PF04012_consen 31 AIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAERLEQQLDQA 110 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666777777777777777778888888999999999999999999998765444333 3333444455555555
Q ss_pred HHHHHHHHHHHHH
Q 038436 323 EDHICLCFLTINR 335 (353)
Q Consensus 323 eehv~lC~~tInr 335 (353)
+.++..--..|.+
T Consensus 111 ~~~~~~l~~~l~~ 123 (221)
T PF04012_consen 111 EAQVEKLKEQLEE 123 (221)
T ss_pred HHHHHHHHHHHHH
Confidence 5554444444433
No 25
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=43.98 E-value=2e+02 Score=26.94 Aligned_cols=84 Identities=21% Similarity=0.260 Sum_probs=49.5
Q ss_pred HHHHHHHhhhhhhhhhcccccHHHHHHHHHHHHHhhHHHHHHHHHcCC-ch-HHHHHHHHHHhchhhHHHHHHHHHHHHH
Q 038436 250 FAAQLDVAAKGVYILVNDFDTISRMVRRLYDEVEHRKDIARMCFRSGN-SE-ILKEVMKEFHMHESSFLEQLKELEDHIC 327 (353)
Q Consensus 250 ~~~qld~aakGtyil~~DldTIs~LV~RL~deIe~~~~~v~fav~~~~-~~-~vk~vv~elkk~~~~f~~qleeLeehv~ 327 (353)
+.+.++.+..++---.++-+.-..||++ |.|.++.--+-=+..-+ .. -...-++.++...+...+|++-||.|.
T Consensus 108 Le~~l~~~~~~~~~~~~~~~~~~~lvk~---e~EqLL~YK~~ql~~~~~~~~~~~~~l~~v~~Dl~~ie~QV~~Le~~L- 183 (195)
T PF12761_consen 108 LEEKLSKVEQAAESRRSDTDSKPALVKR---EFEQLLDYKERQLRELEEGRSKSGKNLKSVREDLDTIEEQVDGLESHL- 183 (195)
T ss_pred HHHHHHHHHHHHHhcccCCcchHHHHHH---HHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3344444444433324556666677776 66666665443333311 01 133446777777788999999999998
Q ss_pred HHHHHHHHHHHHHHHHH
Q 038436 328 LCFLTINRSRRLVLQEI 344 (353)
Q Consensus 328 lC~~tInraR~lVl~~I 344 (353)
+.|..+|+..
T Consensus 184 -------~~k~~eL~~L 193 (195)
T PF12761_consen 184 -------SSKKQELQQL 193 (195)
T ss_pred -------HHHHHHHHHh
Confidence 5566666643
No 26
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=42.87 E-value=2.8e+02 Score=26.47 Aligned_cols=26 Identities=8% Similarity=0.316 Sum_probs=13.6
Q ss_pred HHHHHHHhhhhhhhhhcccccHHHHHHHHHH
Q 038436 250 FAAQLDVAAKGVYILVNDFDTISRMVRRLYD 280 (353)
Q Consensus 250 ~~~qld~aakGtyil~~DldTIs~LV~RL~d 280 (353)
+..+||+..+-+ ...-.+.++.+-.+
T Consensus 112 ~rk~l~~LK~e~-----~y~aT~~ii~ky~e 137 (251)
T COG5415 112 HRKKLEKLKEET-----HYNATSSIIQKYSE 137 (251)
T ss_pred HHHHHHHHhhhh-----hHHHHHHHHHHhcc
Confidence 456777765432 23345555555543
No 27
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=41.27 E-value=1.8e+02 Score=25.34 Aligned_cols=54 Identities=11% Similarity=0.166 Sum_probs=31.1
Q ss_pred ccHHHHHHHHHHHHHhhHHHHHHHHHcC--------CchHHHHHHHHHHhchhhHHHHHHHHH
Q 038436 269 DTISRMVRRLYDEVEHRKDIARMCFRSG--------NSEILKEVMKEFHMHESSFLEQLKELE 323 (353)
Q Consensus 269 dTIs~LV~RL~deIe~~~~~v~fav~~~--------~~~~vk~vv~elkk~~~~f~~qleeLe 323 (353)
|.+...|..+.+.+.+-..-++-+++.. ..+ .+.-|++|......+..+|+.|.
T Consensus 68 ~~~~~~~~~~~~~~~~~~dklE~~fd~rV~~aL~rLgvP-s~~dv~~L~~rId~L~~~v~~l~ 129 (132)
T PF05597_consen 68 DQVKSRVDDVKERATGQWDKLEQAFDERVARALNRLGVP-SRKDVEALSARIDQLTAQVERLA 129 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666777777776666555554444431 111 34456666666666666666654
No 28
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=40.63 E-value=4.1e+02 Score=30.62 Aligned_cols=94 Identities=18% Similarity=0.231 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHhhhhhh-----hhhcccccHHHHHHHHHHHHHhhHHHHHHH---HHc-CCchH-HHHHHHHHHhchhhH
Q 038436 246 LLQKFAAQLDVAAKGVY-----ILVNDFDTISRMVRRLYDEVEHRKDIARMC---FRS-GNSEI-LKEVMKEFHMHESSF 315 (353)
Q Consensus 246 ~l~k~~~qld~aakGty-----il~~DldTIs~LV~RL~deIe~~~~~v~fa---v~~-~~~~~-vk~vv~elkk~~~~f 315 (353)
-+..+++|+|++ -|.- ..-+-| ++..-|.-|+++|+-+-++-++= ++. .+-+. +++-++.++.+...+
T Consensus 432 ~iadlkEQVDAA-lGAE~MV~qLtdknl-nlEekVklLeetv~dlEalee~~EQL~Esn~ele~DLreEld~~~g~~kel 509 (1243)
T KOG0971|consen 432 TIADLKEQVDAA-LGAEEMVEQLTDKNL-NLEEKVKLLEETVGDLEALEEMNEQLQESNRELELDLREELDMAKGARKEL 509 (1243)
T ss_pred HHHHHHHHHHHh-hcHHHHHHHHHhhcc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 567788999974 2332 222333 46667888888888776665432 121 22222 666677777777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038436 316 LEQLKELEDHICLCFLTINRSRRLVL 341 (353)
Q Consensus 316 ~~qleeLeehv~lC~~tInraR~lVl 341 (353)
.++++.=-||+|-..-||-+-|-+|-
T Consensus 510 ~~r~~aaqet~yDrdqTI~KfRelva 535 (1243)
T KOG0971|consen 510 QKRVEAAQETVYDRDQTIKKFRELVA 535 (1243)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 88888889999999999999998874
No 29
>PF05508 Ran-binding: RanGTP-binding protein; InterPro: IPR008812 The small Ras-like GTPase Ran plays an essential role in the transport of macromolecules in and out of the nucleus and has been implicated in spindle and nuclear envelope formation during mitosis in higher eukaryotes. The Saccharomyces cerevisiae ORF YGL164c encoding a novel RanGTP-binding protein, termed Yrb30p was identified. The protein competes with S. cerevisiae RanBP1 (Yrb1p) for binding to the GTP-bound form of S. cerevisiae Ran (Gsp1p) and is, like Yrb1p, able to form trimeric complexes with RanGTP and some of the karyopherins [].
Probab=40.37 E-value=2.6e+02 Score=27.91 Aligned_cols=69 Identities=19% Similarity=0.231 Sum_probs=45.0
Q ss_pred hhhhhhhhhcccccHHHHHHHHHHHHHhhHHHHHHHHHcCC----chHHHHHHHHHHhchhhHHHHHHHHHHHHHHH
Q 038436 257 AAKGVYILVNDFDTISRMVRRLYDEVEHRKDIARMCFRSGN----SEILKEVMKEFHMHESSFLEQLKELEDHICLC 329 (353)
Q Consensus 257 aakGtyil~~DldTIs~LV~RL~deIe~~~~~v~fav~~~~----~~~vk~vv~elkk~~~~f~~qleeLeehv~lC 329 (353)
+++|. -.|++.-.|++.|+.+|.+.-..++-+...++ .+.-+..++.+.+....+...+||-===+.|+
T Consensus 72 aaRGN----t~Lesal~L~~~L~~eI~~f~~~l~~~~~~~e~~~~~~~~~~~i~~V~~~ik~LL~rId~aiPlinLa 144 (302)
T PF05508_consen 72 AARGN----TSLESALPLTKDLRREIDSFDERLEEAAEKEELSKSSENQKESIKKVERYIKDLLARIDDAIPLINLA 144 (302)
T ss_pred HhcCC----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCcchhHHHHHHHHHHHHHHHHHHHhhcchHHHH
Confidence 66885 45688889999999999998888877777322 22355555555555556666555543333333
No 30
>PF01616 Orbi_NS3: Orbivirus NS3; InterPro: IPR002565 This is a family of Orbivirus non structural protein of unknown function, but which may play a role in release of the virus from infected cells [].
Probab=40.12 E-value=3.2e+02 Score=25.57 Aligned_cols=38 Identities=11% Similarity=0.309 Sum_probs=25.9
Q ss_pred HHHHHHHHhhhHHHHHHhhhhHHHhhhhhhhHHHHHHH
Q 038436 163 MLLFSSLTSKGKKIRRRAKFNKLLKKVGAYSLVISQTA 200 (353)
Q Consensus 163 ~~Ll~~L~~~k~K~~~Klk~~r~~~~vs~~~~vaa~~~ 200 (353)
+..|.+|+...+++.||-.+++...-++.++-.+..+.
T Consensus 73 e~~L~~L~~el~~~kRk~~il~~~~li~a~v~l~ts~~ 110 (195)
T PF01616_consen 73 EQILPKLKHELRKLKRKRRILHIVELIAAIVALLTSVV 110 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788899999999998777776666555444433333
No 31
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=40.11 E-value=90 Score=24.68 Aligned_cols=29 Identities=10% Similarity=0.307 Sum_probs=14.1
Q ss_pred cccccHHHHHHHHHHHHHhhHHHHHHHHH
Q 038436 266 NDFDTISRMVRRLYDEVEHRKDIARMCFR 294 (353)
Q Consensus 266 ~DldTIs~LV~RL~deIe~~~~~v~fav~ 294 (353)
++.+.+-.-++.+-+.+++..+-++-..+
T Consensus 47 ~e~~~ll~~~n~l~~dv~~k~~~v~~~~~ 75 (90)
T PF06103_consen 47 KEINDLLHNTNELLEDVNEKLEKVDPVFE 75 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 44444445555555555555554444433
No 32
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=39.21 E-value=1.4e+02 Score=23.59 Aligned_cols=61 Identities=13% Similarity=0.261 Sum_probs=37.4
Q ss_pred ccHHHHHHHHHHHHHhhHHHHHHH---HHcCCchHHHHHHHHHHhchhhHHHHHHHHHHHHHHH
Q 038436 269 DTISRMVRRLYDEVEHRKDIARMC---FRSGNSEILKEVMKEFHMHESSFLEQLKELEDHICLC 329 (353)
Q Consensus 269 dTIs~LV~RL~deIe~~~~~v~fa---v~~~~~~~vk~vv~elkk~~~~f~~qleeLeehv~lC 329 (353)
++.+.++..|.||+.||+.--.-- .+.-+.-.-...=+.|..+...+.+.||-=++|||.-
T Consensus 13 ~~Ls~vl~~LqDE~~hm~~e~~~L~~~~~~~d~s~~~~~R~~L~~~l~~lv~~mE~K~dQI~~L 76 (79)
T PF06657_consen 13 EALSEVLKALQDEFGHMKMEHQELQDEYKQMDPSLGRRKRRDLEQELEELVKRMEAKADQIYKL 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345789999999999998643222 2222111122333555666667777777777777754
No 33
>PF03511 Fanconi_A: Fanconi anaemia group A protein; InterPro: IPR003516 Fanconi anaemia (FA) [, , ] is a recessive inherited disease characterised by defective DNA repair. FA cells are sensitive to DNA cross-linking agents that cause chromosomal instability and cell death. The disease is manifested clinically by progressive pancytopenia, variable physical anomalies, and predisposition to malignancy []. Four complementation groups have been identified, designated A to D. The FA group A gene (FAA) has been cloned [], but its function remains to be elucidated.
Probab=39.15 E-value=34 Score=26.23 Aligned_cols=37 Identities=19% Similarity=0.469 Sum_probs=28.0
Q ss_pred hHHHHHHHHHH-----hhHHHHHHHHHHHHHHHHHHHhhHHH
Q 038436 81 HFHHLLMDYFE-----ASVEAYNVCQLLLRSVHQTRANYRRI 117 (353)
Q Consensus 81 ~l~~Lv~~YFd-----~S~~a~~~C~~L~~~I~~aR~~~~~i 117 (353)
.|..|++.|.. .+.+|+|+|..+++|+++-+.+...+
T Consensus 12 SLM~LlSs~l~p~~~~d~~kaldiCaeIL~cLE~R~isWl~L 53 (64)
T PF03511_consen 12 SLMGLLSSYLAPKEGADSLKALDICAEILGCLEKRKISWLVL 53 (64)
T ss_pred HHHHHHHHhcCcccccccHHHHHHHHHHHHHHHhCCCcHHHh
Confidence 45566777763 56799999999999999877665443
No 34
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=38.84 E-value=2.3e+02 Score=23.54 Aligned_cols=61 Identities=11% Similarity=0.134 Sum_probs=25.9
Q ss_pred hhhhcccccHHHHHHHHHHHHHhhHHHHHHHHHcCCchHHHHHHHHHHhchhhHHHHHHHH
Q 038436 262 YILVNDFDTISRMVRRLYDEVEHRKDIARMCFRSGNSEILKEVMKEFHMHESSFLEQLKEL 322 (353)
Q Consensus 262 yil~~DldTIs~LV~RL~deIe~~~~~v~fav~~~~~~~vk~vv~elkk~~~~f~~qleeL 322 (353)
|++..|-+.+......+.+.........+---.....+.-+..++++++....|.+..+++
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~ 128 (181)
T PF12729_consen 68 YLLATDPEERQEIEKEIDEARAEIDEALEEYEKLILSPEEKQLLEEFKEAWKAYRKLRDQV 128 (181)
T ss_pred hhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555554444444444443333222222111223445555555555554444443
No 35
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=36.04 E-value=53 Score=27.43 Aligned_cols=13 Identities=38% Similarity=0.580 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHH
Q 038436 315 FLEQLKELEDHIC 327 (353)
Q Consensus 315 f~~qleeLeehv~ 327 (353)
-.++|++||+||+
T Consensus 88 ~~k~i~~le~~I~ 100 (100)
T PF04568_consen 88 HRKEIDELEKHIE 100 (100)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC
Confidence 5667777777763
No 36
>PF07730 HisKA_3: Histidine kinase; InterPro: IPR011712 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represetns the dimerisation and phosphoacceptor domain of a sub-family of histidine kinases. It shares sequence similarity with IPR003661 from INTERPRO and IPR011102 from INTERPRO.; GO: 0000155 two-component sensor activity, 0046983 protein dimerization activity, 0000160 two-component signal transduction system (phosphorelay), 0016021 integral to membrane; PDB: 3GIE_B 3GIG_A 3EHJ_B 3EHH_B 3GIF_B 3EHF_B 3EHG_A.
Probab=34.12 E-value=1.8e+02 Score=21.03 Aligned_cols=55 Identities=16% Similarity=0.262 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHcCCchHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHH
Q 038436 272 SRMVRRLYDEVEHRKDIARMCFRSGNSEILKEVMKEFHMHESSFLEQLKELEDHICLCFLTIN 334 (353)
Q Consensus 272 s~LV~RL~deIe~~~~~v~fav~~~~~~~vk~vv~elkk~~~~f~~qleeLeehv~lC~~tIn 334 (353)
.++..-|||.|-+.+..+.+-++. ....+.+..+...+.++++.+.+..+...+.
T Consensus 3 ~rIAreLHD~v~q~L~~i~~~l~~--------~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~R 57 (68)
T PF07730_consen 3 RRIARELHDGVGQSLTAIKMQLEA--------LRRRLADDPEEAREELEEIRELLREALQELR 57 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHTTT-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHH--------HHhhhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367788999999999998766443 3334455556777888888877776655443
No 37
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=33.50 E-value=2.5e+02 Score=22.48 Aligned_cols=79 Identities=15% Similarity=0.223 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHH-HHHHHHHhhHHHHHHHHh-cccccc----hHHHHHHHhhhhhcCCCCCh-hhHH
Q 038436 81 HFHHLLMDYFEASVEAYNVCQLLLR-SVHQTRANYRRIQRVMKI-SENMHD----CRATFKHLAAFASSKNPLSI-ISMV 153 (353)
Q Consensus 81 ~l~~Lv~~YFd~S~~a~~~C~~L~~-~I~~aR~~~~~i~~aL~~-~~~~~~----~~~~~~eL~~F~~~~nPF~~-~~~~ 153 (353)
.++.++.+||++. ..-+.+..|.+ .+. ......+..++.. ++.... |...+..|. ..+..+. .+..
T Consensus 4 ~i~~~l~ey~~~~-d~~ea~~~l~el~~~--~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~----~~~~~~~~~~~~ 76 (113)
T PF02847_consen 4 KIFSILMEYFSSG-DVDEAVECLKELKLP--SQHHEVVKVILECALEEKKSYREYYSKLLSHLC----KRKLISKEQFQE 76 (113)
T ss_dssp HHHHHHHHHHHHT--HHHHHHHHHHTT-G--GGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHH----HTTSS-HHHHHH
T ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHhCCC--ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH----hcCCCCHHHHHH
Confidence 5788999999763 55566666655 122 3334555666654 344222 334444443 2455555 4566
Q ss_pred HHHHHHhchHHHH
Q 038436 154 QFRDYHHGKMLLF 166 (353)
Q Consensus 154 ~F~~v~~~~~~Ll 166 (353)
+|+.+.+...++.
T Consensus 77 gf~~~l~~l~Dl~ 89 (113)
T PF02847_consen 77 GFEDLLESLEDLE 89 (113)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHhHhhhcc
Confidence 6766666555543
No 38
>KOG0217 consensus Mismatch repair ATPase MSH6 (MutS family) [Replication, recombination and repair]
Probab=31.24 E-value=3.6e+02 Score=31.33 Aligned_cols=56 Identities=18% Similarity=0.274 Sum_probs=38.5
Q ss_pred ccHHHHHHHHHHHHHhhHHHHHHHHHcCCchHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHH
Q 038436 269 DTISRMVRRLYDEVEHRKDIARMCFRSGNSEILKEVMKEFHMHESSFLEQLKELEDHICLCFLT 332 (353)
Q Consensus 269 dTIs~LV~RL~deIe~~~~~v~fav~~~~~~~vk~vv~elkk~~~~f~~qleeLeehv~lC~~t 332 (353)
++++.+|.+|...-|+++..-.-+ .+-+..++-.+...++..+..+-.==|+|+.+
T Consensus 787 p~~~kli~~l~~aee~~~~~~~d~--------~~r~~~~f~~~~~~w~~tv~~~a~iD~l~sla 842 (1125)
T KOG0217|consen 787 PDLRKLIAHLDEAEERKKSSLSDL--------KRRLIVRFDEHYIIWQATVKALASIDCLLSLA 842 (1125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 678888888888888877776533 44456666677777887777776655555443
No 39
>cd02435 CCC1 CCC1. CCC1: This domain is present in the CCC1, an iron and manganese transporter of Saccharomyces cerevisiae. CCC1 is a transmembrane protein that is located in the vacuole and transfers the iron and manganese ions from the cytosol to the vacuole. This domain may be unique to certain fungi and plants.
Probab=31.23 E-value=2.8e+02 Score=26.47 Aligned_cols=63 Identities=14% Similarity=0.154 Sum_probs=29.4
Q ss_pred Hhhhhhhhhhcc-cccHHHHHHHHHHHHHhhHH------HHHHHHHcCCch-HHHHH-HHHHHhchhhHHHH
Q 038436 256 VAAKGVYILVND-FDTISRMVRRLYDEVEHRKD------IARMCFRSGNSE-ILKEV-MKEFHMHESSFLEQ 318 (353)
Q Consensus 256 ~aakGtyil~~D-ldTIs~LV~RL~deIe~~~~------~v~fav~~~~~~-~vk~v-v~elkk~~~~f~~q 318 (353)
+|+-|-|+-.+. -|.....++|-..++++..+ +.+.-.+++-.+ ....+ .+.+.++.+.+.+.
T Consensus 66 SMa~GeYlS~~sq~d~~~~~~~~e~~~i~~~~~~E~~e~l~~~~~~~G~~~~~~~~~~~~~l~~~~~~~~~~ 137 (241)
T cd02435 66 SMGLGGYLAAKSERDHYQREHKRKQEAVEASPSTEQEEIILYDLVQYGLVPLETAASTVTDLRKNPQALVDF 137 (241)
T ss_pred HHHHhhHHHhhhhHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhChhHHHHH
Confidence 455555554442 44555555555555544332 334444443333 23333 33566665444443
No 40
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=30.83 E-value=4.2e+02 Score=24.18 Aligned_cols=39 Identities=21% Similarity=0.249 Sum_probs=25.5
Q ss_pred HHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038436 308 FHMHESSFLEQLKELEDHICLCFLTINRSRRLVLQEIMV 346 (353)
Q Consensus 308 lkk~~~~f~~qleeLeehv~lC~~tInraR~lVl~~I~~ 346 (353)
+.......++++.||+-|+..-..+..++=.-.|.+|.+
T Consensus 83 l~d~inE~t~k~~El~~~i~el~~~~~Ks~~~~l~q~~~ 121 (165)
T PF09602_consen 83 LNDSINEWTDKLNELSAKIQELLLSPSKSSFSLLSQISK 121 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHh
Confidence 333344677777888888777666666676666666644
No 41
>cd07645 I-BAR_IMD_BAIAP2L1 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. BAIAP2L1 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1) is also known as IRTKS (Insulin Receptor Tyrosine Kinase Substrate). It is widely expressed, serves as a substrate for the insulin receptor, and binds the small GTPase Rac. It plays a role in regulating the actin cytoskeleton and colocalizes with F-actin, cortactin, VASP, and vinculin. BAIAP2L1 expression leads to the formation of short actin bundles, distinct from filopodia-like protrusions induced by the expression of the related protein IRSp53. It contains an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The IMD domain of
Probab=30.63 E-value=4.4e+02 Score=25.20 Aligned_cols=94 Identities=13% Similarity=0.150 Sum_probs=54.8
Q ss_pred hHHHHHHHHHHhhHHHHHH----------HHHHHHHHHHHHHhhHHHHHHHHhcccccchHHHHHHHhhhhhcCCCCChh
Q 038436 81 HFHHLLMDYFEASVEAYNV----------CQLLLRSVHQTRANYRRIQRVMKISENMHDCRATFKHLAAFASSKNPLSII 150 (353)
Q Consensus 81 ~l~~Lv~~YFd~S~~a~~~----------C~~L~~~I~~aR~~~~~i~~aL~~~~~~~~~~~~~~eL~~F~~~~nPF~~~ 150 (353)
.+...-..|||.-.+.=+. =..|-+-...=|..+..+...++.| +..++.+|-+=...+--|-..
T Consensus 38 a~~~A~~~y~dal~Kige~A~~s~~SkeLG~~L~qi~ev~r~i~~~le~~lK~F-----h~Ell~~LE~k~elD~kyi~a 112 (226)
T cd07645 38 AMVLAGKAYYDGVAKIGEIAAVSPVSKELGHVLMEISDVHKKLNDSLEENFKKF-----HREIIAELERKTDLDVKYMTA 112 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 3445557789887664332 2223322222223344444466666 334555554433333334345
Q ss_pred hHHHHHHHHhchHHHHHHHHhhhHHHHHH
Q 038436 151 SMVQFRDYHHGKMLLFSSLTSKGKKIRRR 179 (353)
Q Consensus 151 ~~~~F~~v~~~~~~Ll~~L~~~k~K~~~K 179 (353)
....|+.=|....+=|+|=++.-+|++||
T Consensus 113 ~~Kkyq~E~k~k~dsLeK~~seLKK~RRK 141 (226)
T cd07645 113 TLKRYQTEHKNKLDSLEKSQADLKKIRRK 141 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55678888888888888888888888888
No 42
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=29.78 E-value=6.3e+02 Score=25.91 Aligned_cols=58 Identities=14% Similarity=0.044 Sum_probs=29.1
Q ss_pred CCchHHHHHhhchhhHHHHHHHHHhhhhh-cccccCCC----CCCchhhhHHhhhhccCCChHH
Q 038436 14 SNINEEYTEAFRTKSYVEMWSKAQSQLAA-RTSFNGLS----STSSVSFYVHLSDYLLEPQQET 72 (353)
Q Consensus 14 ~nv~~eY~~a~rt~SY~~~~~~~~~~~~~-~s~~~~~~----~~~s~~s~~~~~~~LLep~qe~ 72 (353)
.+..+.+-..+.+-+ .++-+.+...++| ..|..++. .+.+-+.+.+..+.|-.-.+|+
T Consensus 191 ~~~~~~i~~~l~~le-~ema~lL~sLt~HfDqC~~a~~~~eg~~~~~~e~~e~l~Vl~~Da~El 253 (412)
T PF04108_consen 191 NPLMSTILKELHSLE-QEMASLLESLTNHFDQCVTAVRHTEGEPMSEEERQEMLEVLENDAQEL 253 (412)
T ss_pred cccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHcchhhH
Confidence 456666666666444 5555555656666 33321111 1222345666666654444443
No 43
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=29.74 E-value=1.1e+02 Score=30.75 Aligned_cols=44 Identities=20% Similarity=0.385 Sum_probs=38.0
Q ss_pred HHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038436 301 LKEVMKEFHMHESSFLEQLKELEDHICLCFLTINRSRRLVLQEIM 345 (353)
Q Consensus 301 vk~vv~elkk~~~~f~~qleeLeehv~lC~~tInraR~lVl~~I~ 345 (353)
+.+--++|.+.+..+.+.++|+++.-..|...|.+-|.-+ +++.
T Consensus 9 L~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrL-k~L~ 52 (330)
T PF07851_consen 9 LQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRL-KELK 52 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 6677899999999999999999999999999999987754 4443
No 44
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=29.68 E-value=5.2e+02 Score=28.76 Aligned_cols=27 Identities=19% Similarity=0.399 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhchhhHHHHHHHHHHHH
Q 038436 300 ILKEVMKEFHMHESSFLEQLKELEDHI 326 (353)
Q Consensus 300 ~vk~vv~elkk~~~~f~~qleeLeehv 326 (353)
.+++++++.-++-....++++.+..|+
T Consensus 689 ~I~~iL~~~~~~I~~~v~~ik~i~~~~ 715 (717)
T PF10168_consen 689 TIKEILKQQGEEIDELVKQIKNIKKIV 715 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 377777777777777777777777765
No 45
>PRK10698 phage shock protein PspA; Provisional
Probab=29.21 E-value=4.8e+02 Score=24.43 Aligned_cols=89 Identities=9% Similarity=0.143 Sum_probs=55.5
Q ss_pred HHHHHHHHhhhhhhhhhcccccHHHHHHHHHHHHHhhHHHHHHHHHcCCchHHH----------HHHHHHHhchhhHHHH
Q 038436 249 KFAAQLDVAAKGVYILVNDFDTISRMVRRLYDEVEHRKDIARMCFRSGNSEILK----------EVMKEFHMHESSFLEQ 318 (353)
Q Consensus 249 k~~~qld~aakGtyil~~DldTIs~LV~RL~deIe~~~~~v~fav~~~~~~~vk----------~vv~elkk~~~~f~~q 318 (353)
...+++..+..++=-++-+-..+.+-+..+...++.+-.-+..|+..|+...-+ .-+..|+........+
T Consensus 35 em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~ 114 (222)
T PRK10698 35 EMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATLEHEVTLVDET 114 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444555677888888899999999999999998865333 3444555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 038436 319 LKELEDHICLCFLTINRSR 337 (353)
Q Consensus 319 leeLeehv~lC~~tInraR 337 (353)
++.|..++..-=..|..+|
T Consensus 115 ~~~L~~~l~~L~~ki~eak 133 (222)
T PRK10698 115 LARMKKEIGELENKLSETR 133 (222)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555555555555554443
No 46
>PF04222 DUF416: Protein of unknown function (DUF416); InterPro: IPR007338 This is a bacterial family of uncharacterised proteins.; PDB: 2Q9R_A 3F7C_A.
Probab=28.77 E-value=2e+02 Score=26.70 Aligned_cols=55 Identities=11% Similarity=0.155 Sum_probs=31.8
Q ss_pred hhhhHHhhhhccCCChHHHHHHHhh---------------hhHHHHHHHHHHh--------hHHHHHHHHHHHHHHHHH
Q 038436 55 VSFYVHLSDYLLEPQQETLMKMIER---------------LHFHHLLMDYFEA--------SVEAYNVCQLLLRSVHQT 110 (353)
Q Consensus 55 ~~s~~~~~~~LLep~qe~v~~il~~---------------~~l~~Lv~~YFd~--------S~~a~~~C~~L~~~I~~a 110 (353)
+|.|..|.+.-=-.+..+.+.||+. .-|..| +++.-+ ..=|.|.|-+|-..++..
T Consensus 27 ~PNY~lF~e~t~~gd~~~~r~~LdlvWe~L~~k~~kinfe~qLekl-E~~iPd~~d~d~yGv~pAlDa~~aL~~~l~~~ 104 (191)
T PF04222_consen 27 YPNYQLFCEVTEFGDAKVYRNILDLVWEYLTVKKAKINFERQLEKL-EEIIPDPDDFDSYGVYPALDACVALSSLLHAI 104 (191)
T ss_dssp HHHHHHHHHHCT-S-HHHHHHHHHHHHHHCCSTT-GGGHHHHHHHH-HHC---GGG--STTHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHCCCCHHHHHHHHHHHHHHHhcccccccHHHHHHHH-HHhCCChhhcchhhhHHHHHHHHHHHHHHHHH
Confidence 5667776666555666777777765 112222 222222 445999999999999843
No 47
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=28.57 E-value=4.5e+02 Score=23.80 Aligned_cols=25 Identities=12% Similarity=0.194 Sum_probs=13.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 038436 313 SSFLEQLKELEDHICLCFLTINRSR 337 (353)
Q Consensus 313 ~~f~~qleeLeehv~lC~~tInraR 337 (353)
++..+.++|.++-++.....+.+--
T Consensus 156 ~~~~~~l~e~~~~L~~l~~~f~~~~ 180 (199)
T PF10112_consen 156 EEIKQSLEEIEETLDTLNQAFEKDL 180 (199)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555544433
No 48
>PF10157 DUF2365: Uncharacterized conserved protein (DUF2365); InterPro: IPR019314 This entry is found in a highly conserved family of proteins which have no known function.
Probab=27.91 E-value=1.2e+02 Score=26.97 Aligned_cols=24 Identities=21% Similarity=0.483 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHhhhhhhhhhcccc
Q 038436 246 LLQKFAAQLDVAAKGVYILVNDFD 269 (353)
Q Consensus 246 ~l~k~~~qld~aakGtyil~~Dld 269 (353)
+..++++-+|+.-||+|-++.=.+
T Consensus 96 sv~~~cdsvD~sik~~y~liakce 119 (149)
T PF10157_consen 96 SVDKLCDSVDASIKSMYTLIAKCE 119 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666788888888888887655433
No 49
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=27.37 E-value=1.2e+02 Score=24.36 Aligned_cols=27 Identities=26% Similarity=0.272 Sum_probs=13.6
Q ss_pred HHHHHHHHHhchhhHHHHHHHHHHHHH
Q 038436 301 LKEVMKEFHMHESSFLEQLKELEDHIC 327 (353)
Q Consensus 301 vk~vv~elkk~~~~f~~qleeLeehv~ 327 (353)
.+..-++|+........+|+||++-|.
T Consensus 37 ~~~~~~eL~~~l~~ie~~L~DL~~aV~ 63 (97)
T PF09177_consen 37 LKWLKRELRNALQSIEWDLEDLEEAVR 63 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555443
No 50
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=27.09 E-value=5.8e+02 Score=24.97 Aligned_cols=83 Identities=13% Similarity=0.033 Sum_probs=52.2
Q ss_pred hhhcccccHHHHHHHHHHHHHhhHHHHHHHHHcCCchHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038436 263 ILVNDFDTISRMVRRLYDEVEHRKDIARMCFRSGNSEILKEVMKEFHMHESSFLEQLKELEDHICLCFLTINRSRRLVLQ 342 (353)
Q Consensus 263 il~~DldTIs~LV~RL~deIe~~~~~v~fav~~~~~~~vk~vv~elkk~~~~f~~qleeLeehv~lC~~tInraR~lVl~ 342 (353)
-..+++-..++.+-+++.-+-...+.+.+..+...+.. =++.+..-......+.-+-+++..+...++.-...-+.
T Consensus 177 ~~l~~l~~l~~~l~~lr~~l~~~~~~l~~l~~~~~~~~----~~~~~~~l~dv~~~~~~~~~~~~~~~~~l~~l~d~~~s 252 (322)
T COG0598 177 EELERLGELRRSLVYLRRALAPLRDVLLRLARRPLDWL----SEEDREYLRDVLDHLTQLIEMLEALRERLSSLLDAYLS 252 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCcccC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788889999999999999999999888888764211 12222222333334444555555555666666666665
Q ss_pred HHhhccc
Q 038436 343 EIMVHQD 349 (353)
Q Consensus 343 ~I~~~~~ 349 (353)
.|+..+|
T Consensus 253 ~is~~~N 259 (322)
T COG0598 253 LINNNQN 259 (322)
T ss_pred HHHHHHH
Confidence 5555444
No 51
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=26.57 E-value=4.2e+02 Score=22.96 Aligned_cols=24 Identities=8% Similarity=0.243 Sum_probs=14.2
Q ss_pred HHHHHHHHHhchhhHHHHHHHHHH
Q 038436 301 LKEVMKEFHMHESSFLEQLKELED 324 (353)
Q Consensus 301 vk~vv~elkk~~~~f~~qleeLee 324 (353)
++.-++.++.-...+...|.++|+
T Consensus 101 i~~dv~~v~~~V~~Le~ki~~ie~ 124 (126)
T PF07889_consen 101 IGDDVDSVQQMVEGLEGKIDEIEE 124 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 555555555555666666666665
No 52
>PRK11020 hypothetical protein; Provisional
Probab=26.50 E-value=2.7e+02 Score=23.94 Aligned_cols=50 Identities=14% Similarity=0.290 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHcCCchHHHHHHHHHHhchhhHHHHHHHHHH
Q 038436 271 ISRMVRRLYDEVEHRKDIARMCFRSGNSEILKEVMKEFHMHESSFLEQLKELED 324 (353)
Q Consensus 271 Is~LV~RL~deIe~~~~~v~fav~~~~~~~vk~vv~elkk~~~~f~~qleeLee 324 (353)
+..-+.+|+|.++..+.--+-+..+++. +++.++.+....+..+|+-|-.
T Consensus 3 ~K~Eiq~L~drLD~~~~Klaaa~~rgd~----~~i~qf~~E~~~l~k~I~~lk~ 52 (118)
T PRK11020 3 EKNEIKRLSDRLDAIRHKLAAASLRGDA----EKYAQFEKEKATLEAEIARLKE 52 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445678888888888888888888887 5566666666667776666643
No 53
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].
Probab=26.12 E-value=4.7e+02 Score=25.94 Aligned_cols=46 Identities=13% Similarity=0.176 Sum_probs=37.0
Q ss_pred HHHHHHHHHH----hhhhhhhhhcccccHHHHHHHHHHHHHhhHHHHHHH
Q 038436 247 LQKFAAQLDV----AAKGVYILVNDFDTISRMVRRLYDEVEHRKDIARMC 292 (353)
Q Consensus 247 l~k~~~qld~----aakGtyil~~DldTIs~LV~RL~deIe~~~~~v~fa 292 (353)
.+.+++|+|. ..+|--.+.+|-.++..|-..+.+.+..+...+..+
T Consensus 93 y~sv~~qId~I~~~L~~~~~~L~~d~~~L~~l~~~n~~~~~~L~~~I~ag 142 (333)
T PF05816_consen 93 YQSVQSQIDKIIAELESGQDELLRDNAMLDQLYEKNWEYYQELEKYIAAG 142 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677776 458888999999999999999999888888777655
No 54
>PF07243 Phlebovirus_G1: Phlebovirus glycoprotein G1; InterPro: IPR010826 This domain is found in several Phlebovirus glycoprotein G1 sequences. Members of the Bunyaviridae family acquire an envelope by budding through the lipid bilayer of the Golgi complex. The budding compartment is thought to be determined by the accumulation of the two heterodimeric membrane glycoproteins G1 and G2 in the Golgi [].; GO: 0016021 integral to membrane, 0019012 virion
Probab=26.04 E-value=2.4e+02 Score=30.21 Aligned_cols=16 Identities=31% Similarity=0.696 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHhhHH
Q 038436 272 SRMVRRLYDEVEHRKD 287 (353)
Q Consensus 272 s~LV~RL~deIe~~~~ 287 (353)
+++++|++++|-..-.
T Consensus 477 ~r~i~rIN~~IGW~~~ 492 (526)
T PF07243_consen 477 RRLIRRINNEIGWRDR 492 (526)
T ss_pred HHHHHHHHHhhCCCCc
Confidence 4667777777755443
No 55
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=25.91 E-value=4.2e+02 Score=22.68 Aligned_cols=11 Identities=18% Similarity=0.329 Sum_probs=7.2
Q ss_pred HHHHHHhhccc
Q 038436 211 HSMVGIVAAPG 221 (353)
Q Consensus 211 ha~a~l~a~P~ 221 (353)
.+++|++.+|-
T Consensus 18 Ga~aaLL~AP~ 28 (115)
T COG4980 18 GAAAALLFAPK 28 (115)
T ss_pred HHHHHHHhCCc
Confidence 45667777773
No 56
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=25.25 E-value=71 Score=29.29 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=19.7
Q ss_pred HHHHHhchhhHHHHHHHHHHHHHHH
Q 038436 305 MKEFHMHESSFLEQLKELEDHICLC 329 (353)
Q Consensus 305 v~elkk~~~~f~~qleeLeehv~lC 329 (353)
++.-|+....|++|++|||.|+-.+
T Consensus 107 lq~mr~~ln~FR~qm~dlE~~l~~Q 131 (179)
T PF14723_consen 107 LQQMRRSLNSFREQMMDLELHLMRQ 131 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5666777789999999999887543
No 57
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=24.64 E-value=5.7e+02 Score=23.69 Aligned_cols=53 Identities=17% Similarity=0.242 Sum_probs=31.1
Q ss_pred HHHHHhhhhhhhhhcccccHHHHHHHHHHHHHhhHHHHHHHHHcCCchHHHHH
Q 038436 252 AQLDVAAKGVYILVNDFDTISRMVRRLYDEVEHRKDIARMCFRSGNSEILKEV 304 (353)
Q Consensus 252 ~qld~aakGtyil~~DldTIs~LV~RL~deIe~~~~~v~fav~~~~~~~vk~v 304 (353)
+.|..+.+..--++-.-.-..+-+..+...++.+-.-+..|+..|++..-+++
T Consensus 38 ~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~A 90 (219)
T TIGR02977 38 DTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAA 90 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 34444443333333333445566677777777788888888888876543333
No 58
>PF04888 SseC: Secretion system effector C (SseC) like family ; InterPro: IPR006972 SseC is a secreted protein that forms a complex together with SecB and SecD on the surface of Salmonella typhimurium. All these proteins are secreted by the type III secretion system []. Many mucosal pathogens use type III secretion systems for the injection of effector proteins into target cells. SecB, SseC and SecD are inserted into the target cell membrane. where they form a small pore or translocon [, ]. In addition to SseC, this family includes the bacterial secreted proteins PopB, PepB, YopB and EspD which are thought to be directly involved in pore formation, and type III secretion system translocon.; GO: 0009405 pathogenesis
Probab=23.93 E-value=4.2e+02 Score=25.60 Aligned_cols=11 Identities=9% Similarity=-0.000 Sum_probs=5.0
Q ss_pred HHHHHHHhchH
Q 038436 153 VQFRDYHHGKM 163 (353)
Q Consensus 153 ~~F~~v~~~~~ 163 (353)
.+++..++.+.
T Consensus 22 ~~~~~~~~~~~ 32 (306)
T PF04888_consen 22 EQIERASEAQE 32 (306)
T ss_pred HHHHHHHHHHH
Confidence 34444444444
No 59
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=23.82 E-value=4.4e+02 Score=25.26 Aligned_cols=48 Identities=4% Similarity=0.028 Sum_probs=32.4
Q ss_pred HHHHHHHHhhhhhhhhhcccccHHHHHHHHHHHHHhhHHHHHHHHHcC
Q 038436 249 KFAAQLDVAAKGVYILVNDFDTISRMVRRLYDEVEHRKDIARMCFRSG 296 (353)
Q Consensus 249 k~~~qld~aakGtyil~~DldTIs~LV~RL~deIe~~~~~v~fav~~~ 296 (353)
++..+++.-..+-.=+.+.+|.+..-|++|+..||....-++-..++.
T Consensus 44 ~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq 91 (263)
T PRK10803 44 QLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQ 91 (263)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 334455554555566678888888889999888888776665554443
No 60
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=23.71 E-value=7.3e+02 Score=24.62 Aligned_cols=38 Identities=18% Similarity=0.190 Sum_probs=29.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 038436 312 ESSFLEQLKELEDHICLCFLTINRSRRLVLQEIMVHQD 349 (353)
Q Consensus 312 ~~~f~~qleeLeehv~lC~~tInraR~lVl~~I~~~~~ 349 (353)
...+.+.++.+.+|+...+-.++......+..|+..+|
T Consensus 216 ~~~~~~Di~~l~~~~~~~~~~~~~l~d~~~~~i~~~~N 253 (316)
T PRK11085 216 AREILRDIESLLPHNESLFQKVNFLMQAAMGFINIEQN 253 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 35677888888999988888888888777777776655
No 61
>PF12363 DUF3647: Phage protein ; InterPro: IPR024410 Proteins in this entry are frequently annotated as phage proteins, however there is little accompanying literature to back this up or to describe the nature of these phage proteins.
Probab=23.50 E-value=3.3e+02 Score=22.79 Aligned_cols=61 Identities=15% Similarity=0.186 Sum_probs=45.5
Q ss_pred hHHhhhhccCCChHHHHHHHhh-----------hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHH
Q 038436 58 YVHLSDYLLEPQQETLMKMIER-----------LHFHHLLMDYFEASVEAYNVCQLLLRSVHQTRANYRRIQ 118 (353)
Q Consensus 58 ~~~~~~~LLep~qe~v~~il~~-----------~~l~~Lv~~YFd~S~~a~~~C~~L~~~I~~aR~~~~~i~ 118 (353)
+..+-..|++-|..++-.++.+ .++...++++|+.-...-.+|..+++-++..-.-+..++
T Consensus 38 ~~~l~~~l~~~d~~al~d~i~~a~~~~~~~~s~~eIe~~ie~~~e~~~~~~~l~~~vl~el~~s~~~k~~~k 109 (113)
T PF12363_consen 38 LSQLVPGLLQGDPVALADIIYAATAHEKKRPSREEIEDYIEDIIEDEDDIEELFDEVLKELKKSNFFKRAVK 109 (113)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhChhHHHHHH
Confidence 4456677788899888888887 367788888888776688899999988876644444444
No 62
>PF13887 MRF_C1: Myelin gene regulatory factor -C-terminal domain 1
Probab=22.62 E-value=86 Score=21.48 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=19.5
Q ss_pred HHHHHHHhchhhHHHHHHHHHH
Q 038436 303 EVMKEFHMHESSFLEQLKELED 324 (353)
Q Consensus 303 ~vv~elkk~~~~f~~qleeLee 324 (353)
-+++||.|-..++...++|||.
T Consensus 14 ~AvqeLck~t~~Le~rI~ele~ 35 (36)
T PF13887_consen 14 GAVQELCKLTDNLETRIDELER 35 (36)
T ss_pred HHHHHHHHHhccHHHHHHHHhh
Confidence 4689999999999999999985
No 63
>cd02432 Nodulin-21_like_1 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_1: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=22.05 E-value=5.5e+02 Score=24.04 Aligned_cols=56 Identities=21% Similarity=0.312 Sum_probs=24.7
Q ss_pred hhhhhhhhhc-ccccHHHHHHHHHHHHHhh-----HHHHHHHHHcCCch-HHHHHHHHHHhch
Q 038436 257 AAKGVYILVN-DFDTISRMVRRLYDEVEHR-----KDIARMCFRSGNSE-ILKEVMKEFHMHE 312 (353)
Q Consensus 257 aakGtyil~~-DldTIs~LV~RL~deIe~~-----~~~v~fav~~~~~~-~vk~vv~elkk~~ 312 (353)
|+-|-|+-.+ +-|.....++|=+.+|++. ..+.+.-..++-++ ....+++++-++.
T Consensus 54 Ma~G~yls~~sq~d~~~~~~~~e~~~i~~~p~~e~~el~~~~~~~G~~~~~a~~~a~~l~~~~ 116 (218)
T cd02432 54 MAAGEYVSVSSQRDTEKADIAKERRELAEDPEAELEELADIYEERGLSPELARQVADELMAKD 116 (218)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcC
Confidence 4444444333 2344444444555555543 22333333333222 3666666666553
No 64
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=21.97 E-value=4e+02 Score=21.39 Aligned_cols=79 Identities=11% Similarity=0.148 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh-cccccc----hHHHHHHHhhhhhcCCCCCh-hhHHH
Q 038436 81 HFHHLLMDYFEASVEAYNVCQLLLRSVHQTRANYRRIQRVMKI-SENMHD----CRATFKHLAAFASSKNPLSI-ISMVQ 154 (353)
Q Consensus 81 ~l~~Lv~~YFd~S~~a~~~C~~L~~~I~~aR~~~~~i~~aL~~-~~~~~~----~~~~~~eL~~F~~~~nPF~~-~~~~~ 154 (353)
.++.++.+||.+. ...+.+.-|.+ ++--...+..+..+|.. ++.... |...+..|.+ .++.+. .+..+
T Consensus 4 ~i~~~l~ey~~~~-D~~ea~~~l~~-L~~~~~~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~----~~~~~~~~~~~~ 77 (113)
T smart00544 4 KIFLIIEEYLSSG-DTDEAVHCLLE-LKLPEQHHEVVKVLLTCALEEKRTYREMYSVLLSRLCQ----ANVISTKQFEKG 77 (113)
T ss_pred HHHHHHHHHHHcC-CHHHHHHHHHH-hCCCcchHHHHHHHHHHHHcCCccHHHHHHHHHHHHHH----cCCcCHHHHHHH
Confidence 4678999999553 44444444433 11112334555566654 344222 4444555542 466766 46666
Q ss_pred HHHHHhchHHH
Q 038436 155 FRDYHHGKMLL 165 (353)
Q Consensus 155 F~~v~~~~~~L 165 (353)
|+.+.+....+
T Consensus 78 f~~~~~~l~dl 88 (113)
T smart00544 78 FWRLLEDIEDL 88 (113)
T ss_pred HHHHHhhChhh
Confidence 77766665543
No 65
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=21.39 E-value=4.9e+02 Score=25.16 Aligned_cols=55 Identities=22% Similarity=0.414 Sum_probs=37.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHcCCchHHHHHHHHHHhchhhHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 038436 275 VRRLYDEVEHRKDIARMCFRSGNSEILKEVMKEFHMHESSFLE---QLKELEDHICLCFLTINRSRRLV 340 (353)
Q Consensus 275 V~RL~deIe~~~~~v~fav~~~~~~~vk~vv~elkk~~~~f~~---qleeLeehv~lC~~tInraR~lV 340 (353)
++++.+.+.+.++.| -+.+.+++.++.+.|.+ .+.+|++.+..+...|...|..+
T Consensus 33 i~~~~ekLs~~ldvV-----------e~~L~~~I~~~s~~f~~a~~~v~el~~~l~~a~~~~~~~R~~L 90 (291)
T PF10475_consen 33 IEELQEKLSHYLDVV-----------EKKLSREISEKSDSFFQAMSSVQELQDELEEALVICKNLRRNL 90 (291)
T ss_pred HHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555555555 33557778888888865 45677888888888888888764
No 66
>cd07646 I-BAR_IMD_IRSp53 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Insulin Receptor tyrosine kinase Substrate p53. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. IRSp53 (Insulin Receptor tyrosine kinase Substrate p53) is also known as BAIAP2 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2). It is a scaffolding protein that takes part in many signaling pathways including Cdc42-induced filopodia formation, Rac-mediated lamellipodia extension, and spine morphogenesis. IRSp53 exists as multiple splicing variants that differ mainly at the C-termini. One variant (T-form) is expressed exclusively in human breast cancer cells. The gene encoding IRSp53 is a putative susceptibility gene for Gilles de la Tourette syndrome. IRSp53 contains an N-terminal IMD, a CRIB (Cdc42 and Rac interactive binding motif), an SH3 domain, and a WASP
Probab=21.23 E-value=7.4e+02 Score=23.80 Aligned_cols=94 Identities=14% Similarity=0.205 Sum_probs=53.0
Q ss_pred hHHHHHHHHHHhhHHHH----------HHHHHHHHHHHHHHHhhHHHHHHHHhcccccchHHHHHHHhhhhhcCCCCChh
Q 038436 81 HFHHLLMDYFEASVEAY----------NVCQLLLRSVHQTRANYRRIQRVMKISENMHDCRATFKHLAAFASSKNPLSII 150 (353)
Q Consensus 81 ~l~~Lv~~YFd~S~~a~----------~~C~~L~~~I~~aR~~~~~i~~aL~~~~~~~~~~~~~~eL~~F~~~~nPF~~~ 150 (353)
.+..--..|||...+.= +|=.+|-+-...=|.-+..+...++.|. ...+.+|-+=...+--|-..
T Consensus 40 a~~~a~~~y~dAl~Kige~A~~s~gSkeLG~~L~~m~~~hr~i~~~le~~lk~Fh-----~eli~pLE~k~E~D~k~i~a 114 (232)
T cd07646 40 SVTFAAKGYFDALVKMGELASESQGSKELGDVLFQMAEVHRQIQNQLEEMLKSFH-----NELLTQLEQKVELDSRYLTA 114 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Confidence 34445567888766543 3444444433444444455555666663 33444444322333333334
Q ss_pred hHHHHHHHHhchHHHHHHHHhhhHHHHHH
Q 038436 151 SMVQFRDYHHGKMLLFSSLTSKGKKIRRR 179 (353)
Q Consensus 151 ~~~~F~~v~~~~~~Ll~~L~~~k~K~~~K 179 (353)
....|+.=|..-..=++|=++.-+|++||
T Consensus 115 ~~Kky~~e~k~k~~sleK~qseLKKlRrK 143 (232)
T cd07646 115 ALKKYQTEHRSKGESLEKCQAELKKLRKK 143 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55677777777777778877777788777
No 67
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=21.17 E-value=3.4e+02 Score=29.89 Aligned_cols=61 Identities=23% Similarity=0.299 Sum_probs=47.7
Q ss_pred hhHHHHHHHHhchHHHHHHHHhhhHHHHHHhhhhHHHhhhhhhh-HHHHHHHHHHHHHHHHHHHHHH
Q 038436 150 ISMVQFRDYHHGKMLLFSSLTSKGKKIRRRAKFNKLLKKVGAYS-LVISQTALLIALLVFVLHSMVG 215 (353)
Q Consensus 150 ~~~~~F~~v~~~~~~Ll~~L~~~k~K~~~Klk~~r~~~~vs~~~-~vaa~~~v~i~~vv~aaha~a~ 215 (353)
.-+..|...-+..++|...| |+-|-||+-|..||.-+++ |+||...+++|.-+++||-+|-
T Consensus 308 Di~naF~~~degI~SLFSaL-----KVVRLLRLGRVaRKLD~YlEYGAA~LvLLlC~y~lvAHWlAC 369 (971)
T KOG0501|consen 308 DIFNAFERDDEGIGSLFSAL-----KVVRLLRLGRVARKLDHYLEYGAAVLVLLLCVYGLVAHWLAC 369 (971)
T ss_pred HHHHHhhcccccHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 34567888888888888775 4677888899999998665 8888888888888888885544
No 68
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=21.09 E-value=3.4e+02 Score=22.10 Aligned_cols=28 Identities=18% Similarity=0.452 Sum_probs=21.2
Q ss_pred ccHHHHHHHHHHHHHhhHHHHHHHHHcC
Q 038436 269 DTISRMVRRLYDEVEHRKDIARMCFRSG 296 (353)
Q Consensus 269 dTIs~LV~RL~deIe~~~~~v~fav~~~ 296 (353)
.....-+.=|.+.|||.=.+.+||+++-
T Consensus 27 ~~L~eEI~~Lr~qve~nPevtr~A~EN~ 54 (86)
T PF12711_consen 27 EALKEEIQLLREQVEHNPEVTRFAMENI 54 (86)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 4445556667888888889999999983
No 69
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=20.70 E-value=3.6e+02 Score=21.10 Aligned_cols=27 Identities=33% Similarity=0.399 Sum_probs=12.7
Q ss_pred hhHHHHHHHHHHHHHHHHHH--HHHHHhh
Q 038436 192 YSLVISQTALLIALLVFVLH--SMVGIVA 218 (353)
Q Consensus 192 ~~~vaa~~~v~i~~vv~aah--a~a~l~a 218 (353)
++.+....++++++++++.. +++|++.
T Consensus 46 ~~~~v~gl~llv~G~~~~~~~~~v~G~~v 74 (82)
T PF11239_consen 46 VLLVVVGLALLVAGVVLSQPPLGVAGFVV 74 (82)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 33344445555555554443 3455443
No 70
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=20.67 E-value=1.8e+02 Score=19.88 Aligned_cols=33 Identities=9% Similarity=0.373 Sum_probs=24.3
Q ss_pred hhHHhhhhccCCChHHHHHHHhh--hhHHHHHHHHHHhh
Q 038436 57 FYVHLSDYLLEPQQETLMKMIER--LHFHHLLMDYFEAS 93 (353)
Q Consensus 57 s~~~~~~~LLep~qe~v~~il~~--~~l~~Lv~~YFd~S 93 (353)
.++.+|++ +.++....|+. -.|...|..||++.
T Consensus 6 ~F~~iTg~----~~~~A~~~L~~~~wdle~Av~~y~~~~ 40 (43)
T PF14555_consen 6 QFMSITGA----DEDVAIQYLEANNWDLEAAVNAYFDDG 40 (43)
T ss_dssp HHHHHH-S----SHHHHHHHHHHTTT-HHHHHHHHHHSS
T ss_pred HHHHHHCc----CHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 46677775 55777788887 58999999999864
No 71
>KOG4191 consensus Histone acetyltransferases PCAF/SAGA/ADA, subunit TADA3L/NGG1 [Chromatin structure and dynamics]
Probab=20.27 E-value=4.7e+02 Score=27.67 Aligned_cols=75 Identities=20% Similarity=0.265 Sum_probs=51.0
Q ss_pred hhhhhhhcccccHHHHHHHHHHHHHhhHHHHHHHHHcCCchHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 038436 259 KGVYILVNDFDTISRMVRRLYDEVEHRKDIARMCFRSGNSEILKEVMKEFHMHESSFLEQLKELEDHICLCFLTINRSRR 338 (353)
Q Consensus 259 kGtyil~~DldTIs~LV~RL~deIe~~~~~v~fav~~~~~~~vk~vv~elkk~~~~f~~qleeLeehv~lC~~tInraR~ 338 (353)
-|-+-.-.|-|-|+.-.++|..++.-.-+-- -++. ...+..+=+|+.. ..|.+-|++|..+|..|+.-+||+|.
T Consensus 394 ded~pasdddDEvlaeLR~lqaeLk~vS~~N---~k~k-~~Ll~la~eE~a~--qe~~q~lddlDkqI~qaYvKr~r~~k 467 (516)
T KOG4191|consen 394 DEDRPASDDDDEVLAELRKLQAELKAVSAHN---RKKK-HDLLRLAPEEMAR--QEFQQVLDDLDKQIEQAYVKRNRSRK 467 (516)
T ss_pred ccCCCcccchHHHHHHHHHHHHHHHHHHhhh---HHHH-HHHHHhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555667788888888888888876443321 1111 1123334444443 46899999999999999999999986
Q ss_pred H
Q 038436 339 L 339 (353)
Q Consensus 339 l 339 (353)
.
T Consensus 468 k 468 (516)
T KOG4191|consen 468 K 468 (516)
T ss_pred h
Confidence 4
No 72
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=20.25 E-value=4.7e+02 Score=29.84 Aligned_cols=75 Identities=15% Similarity=0.195 Sum_probs=48.1
Q ss_pred hhhcccccHHHHHHHHHHHHHhhHHHHHHHHHcCCch--HHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 038436 263 ILVNDFDTISRMVRRLYDEVEHRKDIARMCFRSGNSE--ILKEVMKEFHMHESSFLEQLKELEDHICLCFLTINRSR 337 (353)
Q Consensus 263 il~~DldTIs~LV~RL~deIe~~~~~v~fav~~~~~~--~vk~vv~elkk~~~~f~~qleeLeehv~lC~~tInraR 337 (353)
.+.+.|||...-+.|-.-.+|.-.+.+..+...-..+ .++..+.|-|.+.++|-+.+.|||..=+.-.+++.+-+
T Consensus 295 ~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~ 371 (1265)
T KOG0976|consen 295 ELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQ 371 (1265)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHH
Confidence 3444555555555554444444444443333221111 27888899999999999999999998888888776654
Done!