Query 038436
Match_columns 353
No_of_seqs 95 out of 107
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 19:10:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038436.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038436hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3twe_A Alpha4H; unknown functi 63.0 5 0.00017 24.1 2.2 16 166-181 10-25 (27)
2 1deq_A Fibrinogen (alpha chain 45.7 1.4E+02 0.0048 29.3 10.5 67 257-332 96-163 (390)
3 2iub_A CORA, divalent cation t 43.1 2.2E+02 0.0075 26.9 14.7 88 83-179 187-287 (363)
4 2r25_A Phosphorelay intermedia 41.5 90 0.0031 27.1 7.8 59 83-145 29-93 (167)
5 1tqg_A Chemotaxis protein CHEA 40.9 1.2E+02 0.004 23.1 9.6 89 81-169 2-103 (105)
6 3t98_B Nucleoporin NUP58/NUP45 37.6 33 0.0011 27.0 4.0 32 300-331 9-40 (93)
7 1deq_A Fibrinogen (alpha chain 31.4 2.2E+02 0.0075 27.9 9.4 34 301-334 97-130 (390)
8 3ck6_A Putative membrane trans 30.2 1.2E+02 0.0042 26.7 7.2 87 82-177 142-234 (252)
9 3nvo_A Zinc transport protein 29.8 2.9E+02 0.0099 24.3 10.5 88 82-178 153-252 (264)
10 2f93_B Sensory rhodopsin II tr 28.8 26 0.00091 29.0 2.1 26 246-273 88-113 (122)
11 4ev6_A Magnesium transport pro 28.6 3.6E+02 0.012 25.0 15.3 38 142-179 225-263 (339)
12 1lq7_A Alpha3W; three helix bu 28.0 63 0.0022 23.1 3.7 18 305-322 27-44 (67)
13 2nsz_A Programmed cell death p 26.8 2E+02 0.0067 23.2 7.2 80 81-166 9-95 (129)
14 3mtu_E Head morphogenesis prot 23.5 76 0.0026 24.2 3.6 26 302-327 29-54 (77)
15 3swk_A Vimentin; cytoskeleton, 22.5 2.3E+02 0.0079 21.6 6.4 77 249-327 4-80 (86)
16 3uoi_A Bacterioferritin, BFR; 22.3 2.5E+02 0.0085 22.6 7.1 48 276-323 94-144 (161)
17 3ol1_A Vimentin; structural ge 21.6 3.1E+02 0.011 21.9 8.6 80 246-327 21-100 (119)
18 2qqy_A Sigma B operon; dodecam 20.7 1.7E+02 0.0058 23.0 5.7 57 269-325 88-147 (149)
No 1
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=62.97 E-value=5 Score=24.14 Aligned_cols=16 Identities=19% Similarity=0.532 Sum_probs=9.8
Q ss_pred HHHHHhhhHHHHHHhh
Q 038436 166 FSSLTSKGKKIRRRAK 181 (353)
Q Consensus 166 l~~L~~~k~K~~~Klk 181 (353)
|+.|+.+-+|+++|++
T Consensus 10 ledlqerlrklrkklr 25 (27)
T 3twe_A 10 LEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3445555667777765
No 2
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=45.71 E-value=1.4e+02 Score=29.33 Aligned_cols=67 Identities=15% Similarity=0.159 Sum_probs=46.4
Q ss_pred hhhhhhhhhcccccH-HHHHHHHHHHHHhhHHHHHHHHHcCCchHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHH
Q 038436 257 AAKGVYILVNDFDTI-SRMVRRLYDEVEHRKDIARMCFRSGNSEILKEVMKEFHMHESSFLEQLKELEDHICLCFLT 332 (353)
Q Consensus 257 aakGtyil~~DldTI-s~LV~RL~deIe~~~~~v~fav~~~~~~~vk~vv~elkk~~~~f~~qleeLeehv~lC~~t 332 (353)
+=|+.....+|.|++ ...-.-|+..|+.++..|+-= +. -|+.|+.........|.-||.-|+.|.+.
T Consensus 96 ~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q--------~~-~ir~Lq~~l~~q~~kiqRLE~~Id~c~~~ 163 (390)
T 1deq_A 96 LMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQ--------VQ-RINLLQKNVRDQLVDMKRLEVDIDIKIRS 163 (390)
T ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHH--------hH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 346777777777654 344445666666666666433 33 47788888888888899999999888764
No 3
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=43.13 E-value=2.2e+02 Score=26.86 Aligned_cols=88 Identities=16% Similarity=0.180 Sum_probs=50.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHH------------HHHhhHHHHHHHHhcccccchHHHHHHHhhhhhcCCCCCh-
Q 038436 83 HHLLMDYFEASVEAYNVCQLLLRSVHQ------------TRANYRRIQRVMKISENMHDCRATFKHLAAFASSKNPLSI- 149 (353)
Q Consensus 83 ~~Lv~~YFd~S~~a~~~C~~L~~~I~~------------aR~~~~~i~~aL~~~~~~~~~~~~~~eL~~F~~~~nPF~~- 149 (353)
..+++.||+.-.+--+--..|+..|.. .|..-..+++++.. -..++..|. ...+|+-.
T Consensus 187 d~ivd~y~~~l~~l~~~id~lE~~v~~~~~~~~l~~l~~lrr~l~~lrr~l~p------~~~vl~~L~---~~~~~~~~~ 257 (363)
T 2iub_A 187 DALVDDYFVLLEKIDDEIDVLEEEVLERPEKETVQRTHQLKRNLVELRKTIWP------LREVLSSLY---RDVPPLIEK 257 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHH---SCCSSSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHH---hcccccCCH
Confidence 366677777766666555555554432 12111222222111 122333333 34455443
Q ss_pred hhHHHHHHHHhchHHHHHHHHhhhHHHHHH
Q 038436 150 ISMVQFRDYHHGKMLLFSSLTSKGKKIRRR 179 (353)
Q Consensus 150 ~~~~~F~~v~~~~~~Ll~~L~~~k~K~~~K 179 (353)
+....|+++++....+.+.++.-+..+..-
T Consensus 258 ~~~~~lrDv~d~~~~~~e~~~~~re~l~~l 287 (363)
T 2iub_A 258 ETVPYFRDVYDHTIQIADTVETFRDIVSGL 287 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566678999999999999999888887754
No 4
>2r25_A Phosphorelay intermediate protein YPD1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: a.24.10.2 PDB: 1c03_A 1oxk_A 1oxb_A 1c02_A 1qsp_A
Probab=41.46 E-value=90 Score=27.08 Aligned_cols=59 Identities=5% Similarity=0.194 Sum_probs=38.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcccccc------hHHHHHHHhhhhhcCC
Q 038436 83 HHLLMDYFEASVEAYNVCQLLLRSVHQTRANYRRIQRVMKISENMHD------CRATFKHLAAFASSKN 145 (353)
Q Consensus 83 ~~Lv~~YFd~S~~a~~~C~~L~~~I~~aR~~~~~i~~aL~~~~~~~~------~~~~~~eL~~F~~~~n 145 (353)
..+|..||+.+.+.. ..|.+++. ....+..+..+.|.++..+. -...-.++..+...+|
T Consensus 29 ~elV~~F~edse~~l---~~L~~AL~-~~~D~~~L~~~aH~LKGSSAnLGA~rV~~~C~~le~~~r~~n 93 (167)
T 2r25_A 29 KGLIIQFIDQAQTTF---AQMQRQLD-GEKNLTELDNLGHFLKGSSAALGLQRIAWVCERIQNLGRKME 93 (167)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHH-TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhHHHHH---HHHHHHHh-cccCHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 689999999988653 34444444 22347888888999987642 1233455666666677
No 5
>1tqg_A Chemotaxis protein CHEA; histidine kinase, phosphotransfer, signal transduction, transferase; 0.98A {Thermotoga maritima} SCOP: a.24.10.3
Probab=40.89 E-value=1.2e+02 Score=23.14 Aligned_cols=89 Identities=8% Similarity=-0.002 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHH---HHhhHHHHHHHHhcccccc---hH------HHHHHHh-hhhhcCCCC
Q 038436 81 HFHHLLMDYFEASVEAYNVCQLLLRSVHQT---RANYRRIQRVMKISENMHD---CR------ATFKHLA-AFASSKNPL 147 (353)
Q Consensus 81 ~l~~Lv~~YFd~S~~a~~~C~~L~~~I~~a---R~~~~~i~~aL~~~~~~~~---~~------~~~~eL~-~F~~~~nPF 147 (353)
++..++..|++.+.+-++-....+..+.+. ......|.+++|.++.... +. ..++.+- ......-|.
T Consensus 2 d~~~l~~~F~~e~~e~l~~l~~~l~~le~~~~~~~~~~~l~r~~HtLKGsa~~~G~~~l~~la~~lE~~l~~~r~~~~~~ 81 (105)
T 1tqg_A 2 SHMEYLGVFVDETKEYLQNLNDTLLELEKNPEDMELINEAFRALHTLKGMAGTMGFSSMAKLCHTLENILDKARNSEIKI 81 (105)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTTSSCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhhhHHHHhcChHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 467889999998877665544444433332 3345678888888876532 11 2233322 111222344
Q ss_pred ChhhHHHHHHHHhchHHHHHHH
Q 038436 148 SIISMVQFRDYHHGKMLLFSSL 169 (353)
Q Consensus 148 ~~~~~~~F~~v~~~~~~Ll~~L 169 (353)
+......+...++....++..+
T Consensus 82 ~~~~~~~l~~~~d~l~~~l~~~ 103 (105)
T 1tqg_A 82 TSDLLDKIFAGVDMITRMVDKI 103 (105)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHh
Confidence 4555556666666666666554
No 6
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=37.61 E-value=33 Score=27.01 Aligned_cols=32 Identities=19% Similarity=0.433 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhchhhHHHHHHHHHHHHHHHHH
Q 038436 300 ILKEVMKEFHMHESSFLEQLKELEDHICLCFL 331 (353)
Q Consensus 300 ~vk~vv~elkk~~~~f~~qleeLeehv~lC~~ 331 (353)
+....+.++++....+..+||++|.|+.-.+.
T Consensus 9 yF~~lv~~fe~rL~~Yr~~IeelE~~L~s~s~ 40 (93)
T 3t98_B 9 YFRVLVQQFEVQLQQYRQQIEELENHLATQAN 40 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 45677899999999999999999999987653
No 7
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=31.42 E-value=2.2e+02 Score=27.95 Aligned_cols=34 Identities=9% Similarity=0.155 Sum_probs=20.0
Q ss_pred HHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHH
Q 038436 301 LKEVMKEFHMHESSFLEQLKELEDHICLCFLTIN 334 (353)
Q Consensus 301 vk~vv~elkk~~~~f~~qleeLeehv~lC~~tIn 334 (353)
++..+++...++..|.+-.+|||.|+-.-=.+|+
T Consensus 97 lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~ 130 (390)
T 1deq_A 97 MRGDFAKANNNDNTFKQINEDLRSRIEILRRKVI 130 (390)
T ss_pred HHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555566666666666666666655444443
No 8
>3ck6_A Putative membrane transport protein; APC91421.1, ZNTB, cytoplasmic domain, PSI-2, protein structure initiative; HET: MSE; 1.90A {Vibrio parahaemolyticus rimd 2210633} PDB: 3bhc_A*
Probab=30.22 E-value=1.2e+02 Score=26.66 Aligned_cols=87 Identities=10% Similarity=-0.020 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHH------HHHHHHHHhhHHHHHHHHhcccccchHHHHHHHhhhhhcCCCCChhhHHHH
Q 038436 82 FHHLLMDYFEASVEAYNVCQLLL------RSVHQTRANYRRIQRVMKISENMHDCRATFKHLAAFASSKNPLSIISMVQF 155 (353)
Q Consensus 82 l~~Lv~~YFd~S~~a~~~C~~L~------~~I~~aR~~~~~i~~aL~~~~~~~~~~~~~~eL~~F~~~~nPF~~~~~~~F 155 (353)
+..++..||+.-.+.-+=-..|+ ..|.+.|..-..+++++.-. ..++..|. ....|++.+....|
T Consensus 142 ld~ivd~y~~~l~~l~~~id~lE~~~~~~~~l~~lrr~l~~lrr~l~p~------r~~l~~L~---r~~~~~~~~~~~~~ 212 (252)
T 3ck6_A 142 IEGLNGKIDLYLDTIEETLNEFDVNDESTYNHIAAQKALISIKRFIRPQ------QYAIRDLI---ESESELVTSRPHQY 212 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCTTCGGGCCHHHHHHHHHHHHHHHHHH------HHHHHHHH---HTTCHHHHTSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH---hCCCCCCHHHHHHH
Confidence 44666777765554444333332 23333333333333333221 12233332 33344434556678
Q ss_pred HHHHhchHHHHHHHHhhhHHHH
Q 038436 156 RDYHHGKMLLFSSLTSKGKKIR 177 (353)
Q Consensus 156 ~~v~~~~~~Ll~~L~~~k~K~~ 177 (353)
++++++...+.+.+++-+..+.
T Consensus 213 rdv~d~~~~~~e~i~~~re~~~ 234 (252)
T 3ck6_A 213 RFAHNNITRINETIEFYLGEVA 234 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999887764
No 9
>3nvo_A Zinc transport protein ZNTB; alpha-beta-alpha sandwich, zinc efflux system, membrane, TRA protein; 2.30A {Salmonella enterica} PDB: 3nwi_A
Probab=29.77 E-value=2.9e+02 Score=24.31 Aligned_cols=88 Identities=16% Similarity=0.015 Sum_probs=53.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHH-----------HHhhHHHHHHHHhcccccchHHHHHHHhhhhhcCCCC-Ch
Q 038436 82 FHHLLMDYFEASVEAYNVCQLLLRSVHQT-----------RANYRRIQRVMKISENMHDCRATFKHLAAFASSKNPL-SI 149 (353)
Q Consensus 82 l~~Lv~~YFd~S~~a~~~C~~L~~~I~~a-----------R~~~~~i~~aL~~~~~~~~~~~~~~eL~~F~~~~nPF-~~ 149 (353)
+..++..||+.-.+.-+--..|+..|... |..-..+++++.. -..++..|. ...+|+ +.
T Consensus 153 ld~ivd~y~~~l~~l~~~id~lE~~l~~~~~~~l~~l~~lrr~l~~lrr~l~p------~~~vl~~L~---~~~~~~~~~ 223 (264)
T 3nvo_A 153 CDALTDHASEFIEELHDKIIDLEDNLLDQQIPPRGFLALLRKQLIVMRRYMAP------QRDVYARLA---SERLPWMSD 223 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC----CCCCTTHHHHHHHHHHHHHHHHHH------HHHHHHHHT---TSCCTTSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHh------HHHHHHHHH---hCCCccCCh
Confidence 45788888888777777777776665432 2222222222221 122334443 344554 44
Q ss_pred hhHHHHHHHHhchHHHHHHHHhhhHHHHH
Q 038436 150 ISMVQFRDYHHGKMLLFSSLTSKGKKIRR 178 (353)
Q Consensus 150 ~~~~~F~~v~~~~~~Ll~~L~~~k~K~~~ 178 (353)
+....|++++++...+.+.++.-+..+..
T Consensus 224 ~~~~~l~Dv~d~~~~~~e~~~~~re~l~~ 252 (264)
T 3nvo_A 224 DHRRRMQDIADRLGRGLDEIDACIARTGI 252 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67778999999999999999988877653
No 10
>2f93_B Sensory rhodopsin II transducer; menbrane protein complex, signal transduction, photocycle ST membrane protein; HET: BOG RET; 2.00A {Natronomonas pharaonis} SCOP: f.17.4.1
Probab=28.83 E-value=26 Score=29.04 Aligned_cols=26 Identities=23% Similarity=0.238 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhhhhhhcccccHHH
Q 038436 246 LLQKFAAQLDVAAKGVYILVNDFDTISR 273 (353)
Q Consensus 246 ~l~k~~~qld~aakGtyil~~DldTIs~ 273 (353)
.|.++.+..+.++-|. +.-|++|-+|
T Consensus 88 pL~rLs~~A~aIa~Gd--LDVdiet~RR 113 (122)
T 2f93_B 88 SLSTLAAKASRMGDGD--LDVELETRRE 113 (122)
T ss_dssp ----------------------------
T ss_pred HHHHHHHHHHHHHcCC--CCCccccccc
Confidence 6778888889999998 4456666554
No 11
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=28.57 E-value=3.6e+02 Score=25.01 Aligned_cols=38 Identities=11% Similarity=0.088 Sum_probs=28.6
Q ss_pred hcCCCCC-hhhHHHHHHHHhchHHHHHHHHhhhHHHHHH
Q 038436 142 SSKNPLS-IISMVQFRDYHHGKMLLFSSLTSKGKKIRRR 179 (353)
Q Consensus 142 ~~~nPF~-~~~~~~F~~v~~~~~~Ll~~L~~~k~K~~~K 179 (353)
....|+. .+....|+++++....+.+.++..+..+..-
T Consensus 225 ~~~~~~~~~~~~~~l~dv~~~~~~l~e~~~~~~e~l~~l 263 (339)
T 4ev6_A 225 RKYLPITTKEDRENFEDLYYDTLQLIDMSATYREVLTSM 263 (339)
T ss_dssp HSCBTTBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445544 3667778999999999999998888877643
No 12
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=28.03 E-value=63 Score=23.09 Aligned_cols=18 Identities=17% Similarity=0.361 Sum_probs=12.4
Q ss_pred HHHHHhchhhHHHHHHHH
Q 038436 305 MKEFHMHESSFLEQLKEL 322 (353)
Q Consensus 305 v~elkk~~~~f~~qleeL 322 (353)
++||+|+.+.+.+.++||
T Consensus 27 ieelkkkweelkkkieel 44 (67)
T 1lq7_A 27 IEELKKKWEELKKKIEEL 44 (67)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 566777777777777665
No 13
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=26.79 E-value=2e+02 Score=23.24 Aligned_cols=80 Identities=8% Similarity=0.095 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHH---HHhhHHHHHHHH-hccccc-c-hHHHHHHHhhhhhcCCCCCh-hhHH
Q 038436 81 HFHHLLMDYFEASVEAYNVCQLLLRSVHQT---RANYRRIQRVMK-ISENMH-D-CRATFKHLAAFASSKNPLSI-ISMV 153 (353)
Q Consensus 81 ~l~~Lv~~YFd~S~~a~~~C~~L~~~I~~a---R~~~~~i~~aL~-~~~~~~-~-~~~~~~eL~~F~~~~nPF~~-~~~~ 153 (353)
.+..++.+||.+. ..-+.| +||+.. ..++..+..++. .++... . -..+..-|... ...+-++. .+..
T Consensus 9 ki~~ll~EY~~~~-D~~Ea~----~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L-~~~~~is~~q~~~ 82 (129)
T 2nsz_A 9 EIDMLLKEYLLSG-DISEAE----HCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSL-WKSSTITIDQMKR 82 (129)
T ss_dssp HHHHHHHHHHHHC-CHHHHH----HHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHH-HHTTCSCHHHHHH
T ss_pred HHHHHHHHHHcCC-CHHHHH----HHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH-HHCCCcCHHHHHH
Confidence 5678999999863 333333 333333 234566666664 456532 2 22333333333 34677777 4677
Q ss_pred HHHHHHhchHHHH
Q 038436 154 QFRDYHHGKMLLF 166 (353)
Q Consensus 154 ~F~~v~~~~~~Ll 166 (353)
+|..+.+....+-
T Consensus 83 Gf~~v~~~l~Dl~ 95 (129)
T 2nsz_A 83 GYERIYNEIPDIN 95 (129)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHhhChHhh
Confidence 7877777766654
No 14
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=23.48 E-value=76 Score=24.24 Aligned_cols=26 Identities=19% Similarity=0.562 Sum_probs=23.2
Q ss_pred HHHHHHHHhchhhHHHHHHHHHHHHH
Q 038436 302 KEVMKEFHMHESSFLEQLKELEDHIC 327 (353)
Q Consensus 302 k~vv~elkk~~~~f~~qleeLeehv~ 327 (353)
-+.+.+||-+-.+|.+.|++||+-++
T Consensus 29 ~~~~~~~~~~~~~~EKTIDDLEDkL~ 54 (77)
T 3mtu_E 29 TEALQQLRVNYGSFVSEYNDLEEKVA 54 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999763
No 15
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=22.48 E-value=2.3e+02 Score=21.56 Aligned_cols=77 Identities=9% Similarity=0.155 Sum_probs=40.7
Q ss_pred HHHHHHHHhhhhhhhhhcccccHHHHHHHHHHHHHhhHHHHHHHHHcCCchHHHHHHHHHHhchhhHHHHHHHHHHHHH
Q 038436 249 KFAAQLDVAAKGVYILVNDFDTISRMVRRLYDEVEHRKDIARMCFRSGNSEILKEVMKEFHMHESSFLEQLKELEDHIC 327 (353)
Q Consensus 249 k~~~qld~aakGtyil~~DldTIs~LV~RL~deIe~~~~~v~fav~~~~~~~vk~vv~elkk~~~~f~~qleeLeehv~ 327 (353)
.++.|++.+..-.--+.-++|++.-.|..+...-|.-...-.-+ ++. -..++.++++.--.-..+..+++-|-+.+.
T Consensus 4 eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~-E~d-~~~LrkdvD~a~l~r~dLE~kvesL~eEl~ 80 (86)
T 3swk_A 4 ELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEA-ENT-LQSFRQDVDNASLARLDLERKVESLQEEIA 80 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-HHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-HHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666553222333466677777766666555544333222 110 012555666666666666666666666554
No 16
>3uoi_A Bacterioferritin, BFR; structural genomics, TB structural genomics consortium, TBSG ferroxidation and iron storage, cytosol; HET: HEM; 1.90A {Mycobacterium tuberculosis} PDB: 3uof_A* 3qb9_A* 2wtl_A* 3bkn_A*
Probab=22.25 E-value=2.5e+02 Score=22.58 Aligned_cols=48 Identities=19% Similarity=0.273 Sum_probs=30.0
Q ss_pred HHHHHHHHhhHHHHHHHHHcCCch---HHHHHHHHHHhchhhHHHHHHHHH
Q 038436 276 RRLYDEVEHRKDIARMCFRSGNSE---ILKEVMKEFHMHESSFLEQLKELE 323 (353)
Q Consensus 276 ~RL~deIe~~~~~v~fav~~~~~~---~vk~vv~elkk~~~~f~~qleeLe 323 (353)
.--...++..+..++.|-+.++.. ++...+++..++...|..+|+.++
T Consensus 94 ~~E~~~~~~~~~~~~~A~~~~D~~t~~~l~~~~~eee~h~~~l~~~l~~i~ 144 (161)
T 3uoi_A 94 AIEYDVLNRLKPGIVMCREKQDTTSAVLLEKIVADEEEHIDYLETQLELMD 144 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333455666677777787666654 366667777777766666655544
No 17
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=21.62 E-value=3.1e+02 Score=21.93 Aligned_cols=80 Identities=9% Similarity=0.140 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHhhhhhhhhhcccccHHHHHHHHHHHHHhhHHHHHHHHHcCCchHHHHHHHHHHhchhhHHHHHHHHHHH
Q 038436 246 LLQKFAAQLDVAAKGVYILVNDFDTISRMVRRLYDEVEHRKDIARMCFRSGNSEILKEVMKEFHMHESSFLEQLKELEDH 325 (353)
Q Consensus 246 ~l~k~~~qld~aakGtyil~~DldTIs~LV~RL~deIe~~~~~v~fav~~~~~~~vk~vv~elkk~~~~f~~qleeLeeh 325 (353)
.+..++.|+|.+.+..--+.-++|++...++.+...-|.-..+-. .+++. -..++.++++.--....+..+++-|.|-
T Consensus 21 ~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~-~~E~d-i~~lrK~lD~~~l~r~dLE~~iesL~eE 98 (119)
T 3ol1_A 21 EMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQRE-EAENT-LQSFRQDVDNASLARLDLERKVESLQEE 98 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-HHHHH-HHHhhhcccHHHHHHHHHHHHHHHHHHH
Confidence 466677888887765555566788888888777766665443321 11210 1125556666555555666666666655
Q ss_pred HH
Q 038436 326 IC 327 (353)
Q Consensus 326 v~ 327 (353)
+.
T Consensus 99 l~ 100 (119)
T 3ol1_A 99 IA 100 (119)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 18
>2qqy_A Sigma B operon; dodecameric alpha-helical, ferritin fold, structural genomic protein structure initiative; 2.00A {Bacillus anthracis str}
Probab=20.69 E-value=1.7e+02 Score=22.98 Aligned_cols=57 Identities=9% Similarity=0.107 Sum_probs=32.9
Q ss_pred ccHHHHHHHHHHHHHhhHHHHHHHHHcCCch---HHHHHHHHHHhchhhHHHHHHHHHHH
Q 038436 269 DTISRMVRRLYDEVEHRKDIARMCFRSGNSE---ILKEVMKEFHMHESSFLEQLKELEDH 325 (353)
Q Consensus 269 dTIs~LV~RL~deIe~~~~~v~fav~~~~~~---~vk~vv~elkk~~~~f~~qleeLeeh 325 (353)
+.+...+..-...++..+..++.|-+.++.. ++...+++..++...|...+++..-|
T Consensus 88 e~l~~~l~~E~~~~~~~~~~~~~a~~~~D~~t~~~l~~~~~eee~h~~~l~~~l~~~~~~ 147 (149)
T 2qqy_A 88 EMLEYARQSEYETIKRYEKRKEQAANLNMTELVVKLEDMIADETNHMEELDRLLNDKAMV 147 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 4455556666666777777888776655543 35556666666666666666554443
Done!