Query 038436
Match_columns 353
No_of_seqs 95 out of 107
Neff 5.7
Searched_HMMs 13730
Date Mon Mar 25 19:10:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038436.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/038436hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1tqga_ a.24.10.3 (A:) Chemota 26.3 1E+02 0.0073 21.7 9.4 87 84-170 5-104 (105)
2 d2htna1 a.25.1.1 (A:1-158) Bac 25.3 87 0.0064 23.5 6.9 48 276-323 92-142 (158)
3 d1seta1 a.2.7.1 (A:1-110) Sery 24.9 1E+02 0.0076 22.1 7.0 46 304-353 65-110 (110)
4 d1vcta1 a.7.12.1 (A:9-107) Hyp 24.7 1.1E+02 0.0077 21.4 7.6 29 270-298 5-33 (99)
5 d2nsza1 a.118.1.14 (A:322-450) 21.1 1.3E+02 0.0097 22.3 7.1 80 80-165 8-94 (129)
6 d1jgca_ a.25.1.1 (A:) Bacterio 20.9 1.2E+02 0.0088 22.8 7.0 46 274-319 90-138 (160)
7 d1sumb_ a.7.12.1 (B:) PhoU hom 19.1 1.6E+02 0.012 23.3 7.8 65 263-335 3-68 (225)
8 d1lgha_ f.3.1.1 (A:) Light-har 18.8 36 0.0026 22.0 2.5 7 215-221 36-42 (56)
9 d1j30a_ a.25.1.1 (A:) Hypothet 16.2 1.3E+02 0.0097 21.9 6.0 44 281-324 94-140 (141)
10 d2hyda2 f.37.1.1 (A:1-323) Put 16.1 2.4E+02 0.017 22.0 9.3 10 246-255 310-319 (323)
No 1
>d1tqga_ a.24.10.3 (A:) Chemotaxis protein CheA P1 domain {Thermotoga maritima [TaxId: 2336]}
Probab=26.34 E-value=1e+02 Score=21.69 Aligned_cols=87 Identities=9% Similarity=0.015 Sum_probs=50.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHhcccccc---hH------HHHHH-HhhhhhcCCCCChh
Q 038436 84 HLLMDYFEASVEAYNVCQLLLRSVHQTR---ANYRRIQRVMKISENMHD---CR------ATFKH-LAAFASSKNPLSII 150 (353)
Q Consensus 84 ~Lv~~YFd~S~~a~~~C~~L~~~I~~aR---~~~~~i~~aL~~~~~~~~---~~------~~~~e-L~~F~~~~nPF~~~ 150 (353)
.++..|.+.+.+-++-....+..+.+.- .....+.+++|.++..+. +. -.++. |......+-|++.+
T Consensus 5 E~l~~Fl~Ea~e~l~~l~~~l~~le~~~~~~~~~~~l~R~~HTLKG~a~~~gl~~i~~lah~lE~~l~~~~~~~~~~~~~ 84 (105)
T d1tqga_ 5 EYLGVFVDETKEYLQNLNDTLLELEKNPEDMELINEAFRALHTLKGMAGTMGFSSMAKLCHTLENILDKARNSEIKITSD 84 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTTSSCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCchhhcCHHHHHHHHHHHHHHHHHHHhCCCCCCHH
Confidence 4667777766666665555554443321 234567777788876532 11 11222 22233445577777
Q ss_pred hHHHHHHHHhchHHHHHHHH
Q 038436 151 SMVQFRDYHHGKMLLFSSLT 170 (353)
Q Consensus 151 ~~~~F~~v~~~~~~Ll~~L~ 170 (353)
....+....+....|++.+.
T Consensus 85 ~~~~l~~~~d~l~~~l~~l~ 104 (105)
T d1tqga_ 85 LLDKIFAGVDMITRMVDKIV 104 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 67777777888888877754
No 2
>d2htna1 a.25.1.1 (A:1-158) Bacterioferritin (cytochrome b1) {Escherichia coli [TaxId: 562]}
Probab=25.32 E-value=87 Score=23.49 Aligned_cols=48 Identities=8% Similarity=0.083 Sum_probs=31.9
Q ss_pred HHHHHHHHhhHHHHHHHHHcCCch---HHHHHHHHHHhchhhHHHHHHHHH
Q 038436 276 RRLYDEVEHRKDIARMCFRSGNSE---ILKEVMKEFHMHESSFLEQLKELE 323 (353)
Q Consensus 276 ~RL~deIe~~~~~v~fav~~~~~~---~vk~vv~elkk~~~~f~~qleeLe 323 (353)
..-...++.....++.|.+.+|.. ++..++++-.++...|.+.|+.++
T Consensus 92 ~~e~~~~~~~~~~~~~a~~~~D~~t~~~l~~il~eee~h~~~l~~~L~~~~ 142 (158)
T d2htna1 92 ALELDGAKNLREAIGYADSVHDYVSRDMMIEILRDEEGHIDWLETELDLIQ 142 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566777788887766654 366777777777777776666553
No 3
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=24.89 E-value=1e+02 Score=22.11 Aligned_cols=46 Identities=13% Similarity=0.070 Sum_probs=25.2
Q ss_pred HHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 038436 304 VMKEFHMHESSFLEQLKELEDHICLCFLTINRSRRLVLQEIMVHQDKSCP 353 (353)
Q Consensus 304 vv~elkk~~~~f~~qleeLeehv~lC~~tInraR~lVl~~I~~~~~~~~~ 353 (353)
-..++.+....+.+++.+||+.....-. ...-++-.|=.-|+.++|
T Consensus 65 ~~~~l~~~~k~lk~~i~~le~~~~~~~~----~l~~~ll~iPNi~~~~VP 110 (110)
T d1seta1 65 EKEALIARGKALGEEAKRLEEALREKEA----RLEALLLQVPLPPWPGAP 110 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHTTCCCCCCTTSC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHcCCCCCCccCc
Confidence 3445555566666777777776644333 333344444445556666
No 4
>d1vcta1 a.7.12.1 (A:9-107) Hypothetical protein PH0236, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}
Probab=24.75 E-value=1.1e+02 Score=21.40 Aligned_cols=29 Identities=21% Similarity=0.302 Sum_probs=17.2
Q ss_pred cHHHHHHHHHHHHHhhHHHHHHHHHcCCc
Q 038436 270 TISRMVRRLYDEVEHRKDIARMCFRSGNS 298 (353)
Q Consensus 270 TIs~LV~RL~deIe~~~~~v~fav~~~~~ 298 (353)
+++..+.+..+-+++|...+=-|+.+++.
T Consensus 5 ~i~~~l~~M~~~~~~ml~~a~~a~~~~D~ 33 (99)
T d1vcta1 5 SVKEIFIEMKDTVELMVDLAYASLLFGDK 33 (99)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHCCH
Confidence 45556666666666666666555555544
No 5
>d2nsza1 a.118.1.14 (A:322-450) Programmed cell death 4, PDCD4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.07 E-value=1.3e+02 Score=22.34 Aligned_cols=80 Identities=10% Similarity=0.097 Sum_probs=40.7
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh-cccccchH-----HHHHHHhhhhhcCCCCCh-hhH
Q 038436 80 LHFHHLLMDYFEASVEAYNVCQLLLRSVHQTRANYRRIQRVMKI-SENMHDCR-----ATFKHLAAFASSKNPLSI-ISM 152 (353)
Q Consensus 80 ~~l~~Lv~~YFd~S~~a~~~C~~L~~~I~~aR~~~~~i~~aL~~-~~~~~~~~-----~~~~eL~~F~~~~nPF~~-~~~ 152 (353)
.++..++.+||++. ..-+++..+.. ++.-..++..++.++.. ++....+. +.+..|. ..+-++. .+.
T Consensus 8 kk~~~ll~EY~~~~-D~~Ea~~~l~e-L~~p~~~~e~V~~~i~~ale~~~~~r~~~~~~Ll~~L~----~~~~is~~~i~ 81 (129)
T d2nsza1 8 KEIDMLLKEYLLSG-DISEAEHCLKE-LEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLW----KSSTITIDQMK 81 (129)
T ss_dssp HHHHHHHHHHHHHC-CHHHHHHHHHH-HTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHH----HTTCSCHHHHH
T ss_pred HHHHHHHHHHHhCC-CHHHHHHHHHH-cCCchhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH----HCCCCCHHHHH
Confidence 35789999999754 44444433332 22112234555555543 34432221 2233332 2456666 356
Q ss_pred HHHHHHHhchHHH
Q 038436 153 VQFRDYHHGKMLL 165 (353)
Q Consensus 153 ~~F~~v~~~~~~L 165 (353)
.+|..+.+...++
T Consensus 82 ~Gf~~~l~~l~Dl 94 (129)
T d2nsza1 82 RGYERIYNEIPDI 94 (129)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHhhCcHH
Confidence 6677776665554
No 6
>d1jgca_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1) {Rhodobacter capsulatus [TaxId: 1061]}
Probab=20.93 E-value=1.2e+02 Score=22.84 Aligned_cols=46 Identities=13% Similarity=0.200 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhhHHHHHHHHHcCCch---HHHHHHHHHHhchhhHHHHH
Q 038436 274 MVRRLYDEVEHRKDIARMCFRSGNSE---ILKEVMKEFHMHESSFLEQL 319 (353)
Q Consensus 274 LV~RL~deIe~~~~~v~fav~~~~~~---~vk~vv~elkk~~~~f~~ql 319 (353)
.+..-+..++..+..++.|-+.+|.. ++..++++-.++...|.++|
T Consensus 90 ~l~~E~~~~~~~~~~~~~a~~~~D~~t~~~l~~~l~eee~h~~~l~~~l 138 (160)
T d1jgca_ 90 DLAGEHDALKLYREARDYCAEVGDIVSKNIFESLITDEEGHVDFLETQI 138 (160)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566677788888887777754 36677777777666664443
No 7
>d1sumb_ a.7.12.1 (B:) PhoU homolog TM1734 {Thermotoga maritima [TaxId: 2336]}
Probab=19.14 E-value=1.6e+02 Score=23.25 Aligned_cols=65 Identities=14% Similarity=0.081 Sum_probs=0.0
Q ss_pred hhhcccccHHHHHHHHHHHHHhhHHHHHHHHHcCCchHHHHHHHHHHhchhhHHHHHHHHHHHH-HHHHHHHHH
Q 038436 263 ILVNDFDTISRMVRRLYDEVEHRKDIARMCFRSGNSEILKEVMKEFHMHESSFLEQLKELEDHI-CLCFLTINR 335 (353)
Q Consensus 263 il~~DldTIs~LV~RL~deIe~~~~~v~fav~~~~~~~vk~vv~elkk~~~~f~~qleeLeehv-~lC~~tInr 335 (353)
.+.++|+.++.-|-|+.+-++.+...+--|+..++.+..++|+ ..-+.++.++.-| ..|...|.+
T Consensus 3 ~~~~~l~~l~~~i~~M~~~v~~~l~~a~~al~~~D~~~a~~V~--------~~d~~Id~l~~~I~~~~~~~la~ 68 (225)
T d1sumb_ 3 LLNEKVEEFKKGVLKAGWFIEKMFRNSISSLVERNESLAREVI--------ADEEVVDQMEVEIQEKAMEVLGL 68 (225)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHH--------HhHHHHHHHHHHHHHHHHHHHhc
No 8
>d1lgha_ f.3.1.1 (A:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=18.81 E-value=36 Score=21.96 Aligned_cols=7 Identities=57% Similarity=1.160 Sum_probs=3.6
Q ss_pred HHhhccc
Q 038436 215 GIVAAPG 221 (353)
Q Consensus 215 ~l~a~P~ 221 (353)
+++|+|+
T Consensus 36 avlaapg 42 (56)
T d1lgha_ 36 AVLAAPG 42 (56)
T ss_dssp HHHHSGG
T ss_pred HHHhcCC
Confidence 4455553
No 9
>d1j30a_ a.25.1.1 (A:) Hypothetical rubrerythrin {Archaeon Sulfolobus tokodaii [TaxId: 111955]}
Probab=16.16 E-value=1.3e+02 Score=21.86 Aligned_cols=44 Identities=18% Similarity=0.249 Sum_probs=32.6
Q ss_pred HHHhhHHHHHHHHHcCCch---HHHHHHHHHHhchhhHHHHHHHHHH
Q 038436 281 EVEHRKDIARMCFRSGNSE---ILKEVMKEFHMHESSFLEQLKELED 324 (353)
Q Consensus 281 eIe~~~~~v~fav~~~~~~---~vk~vv~elkk~~~~f~~qleeLee 324 (353)
.++.....++.|-+.++.. ++...+++-+.+...|.+.|+.|++
T Consensus 94 ~~~~y~~~~~~A~~e~d~~~~~~~~~i~~~E~~H~~~f~~~l~~l~~ 140 (141)
T d1j30a_ 94 WTQMYPGFAKVAREEGFPEVAEWFETLARAEKSHAEKFQNVLKQLKG 140 (141)
T ss_dssp HHTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3444566778887777654 3777888888888999999998874
No 10
>d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}
Probab=16.14 E-value=2.4e+02 Score=22.05 Aligned_cols=10 Identities=10% Similarity=0.262 Sum_probs=4.8
Q ss_pred HHHHHHHHHH
Q 038436 246 LLQKFAAQLD 255 (353)
Q Consensus 246 ~l~k~~~qld 255 (353)
+.+|..+.+|
T Consensus 310 s~~Ri~elLd 319 (323)
T d2hyda2 310 SMDRVFQLID 319 (323)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHC
Confidence 4445554444
Done!