BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038439
(179 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 51/84 (60%), Gaps = 7/84 (8%)
Query: 56 VSYVKFLSNDE-LASASTDSTLRLWDVKENLPVRTFRGHMNEKN--FVGLTV-NSEYIAC 111
VS+VKF N + + +A+ D+TL+LWD + ++T+ GH NEK F +V ++I
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 257
Query: 112 GSESNEVYVYH---KEISKPVTWH 132
GSE N VY+++ KEI + + H
Sbjct: 258 GSEDNMVYIWNLQTKEIVQKLQGH 281
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 38 YIAKYQSTAPCVHGHKKAVSYVKFLSNDEL-ASASTDSTLRLWDVKENLPVRTFRGHMNE 96
Y K++ T + GHK +S V + S+ L SAS D TL++WDV ++T +GH N
Sbjct: 56 YDGKFEKT---ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY 112
Query: 97 KNFVGLTVNSEYIACGSESNEVYVY 121
S I GS V ++
Sbjct: 113 VFCCNFNPQSNLIVSGSFDESVRIW 137
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 51 GHKKAVSYVKFLSNDE-LASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYI 109
GH KAVS VKF N E LAS+S D +++W + +T GH + V + +S +
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 83
Query: 110 ACGSESNEVYVY 121
S+ + ++
Sbjct: 84 VSASDDKTLKIW 95
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 19/98 (19%)
Query: 81 VKENLPVR-TFRGHMNEKNFVGLTVNSEYIACGSESNEVYV---YHKEISKPVTWHRFSS 136
VK N + T GH + V + N E++A S + + Y + K ++ H+
Sbjct: 12 VKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG- 70
Query: 137 PDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKV 174
IS V W SDS +++A+ T+K+
Sbjct: 71 --------------ISDVAWSSDSNLLVSASDDKTLKI 94
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Query: 49 VHGHKKAVSYVKFLSNDEL-ASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSE 107
+ GH V F L S S D ++R+WDVK + ++T H + + V +
Sbjct: 106 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGS 165
Query: 108 YIACGS 113
I S
Sbjct: 166 LIVSSS 171
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 51/84 (60%), Gaps = 7/84 (8%)
Query: 56 VSYVKFLSNDE-LASASTDSTLRLWDVKENLPVRTFRGHMNEKN--FVGLTV-NSEYIAC 111
VS+VKF N + + +A+ D+TL+LWD + ++T+ GH NEK F +V ++I
Sbjct: 201 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 260
Query: 112 GSESNEVYVYH---KEISKPVTWH 132
GSE N VY+++ KEI + + H
Sbjct: 261 GSEDNLVYIWNLQTKEIVQKLQGH 284
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Query: 38 YIAKYQSTAPCVHGHKKAVSYVKFLSNDEL-ASASTDSTLRLWDVKENLPVRTFRGHMNE 96
Y K++ T + GHK +S V + S+ L SAS D TL++WDV ++T +GH N
Sbjct: 59 YDGKFEKT---ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY 115
Query: 97 KNFVGLTVNSEYIACGSESNEVYVYHKEISK 127
S I GS V ++ + K
Sbjct: 116 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGK 146
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 6/93 (6%)
Query: 30 KYNPGSSNYIAKYQSTAPCVHGHKKAVSYVKFLSNDE-LASASTDSTLRLWDVKENLPVR 88
K P NY K+ + GH KAVS VKF N E LAS+S D +++W + +
Sbjct: 11 KPTPVKPNYALKFT-----LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK 65
Query: 89 TFRGHMNEKNFVGLTVNSEYIACGSESNEVYVY 121
T GH + V + +S + S+ + ++
Sbjct: 66 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIW 98
Score = 30.8 bits (68), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 19/98 (19%)
Query: 81 VKENLPVR-TFRGHMNEKNFVGLTVNSEYIACGSESNEVYV---YHKEISKPVTWHRFSS 136
VK N ++ T GH + V + N E++A S + + Y + K ++ H+
Sbjct: 15 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG- 73
Query: 137 PDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKV 174
IS V W SDS +++A+ T+K+
Sbjct: 74 --------------ISDVAWSSDSNLLVSASDDKTLKI 97
Score = 26.9 bits (58), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Query: 49 VHGHKKAVSYVKFLSNDEL-ASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSE 107
+ GH V F L S S D ++R+WDVK ++T H + + V +
Sbjct: 109 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS 168
Query: 108 YIACGS 113
I S
Sbjct: 169 LIVSSS 174
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 51/84 (60%), Gaps = 7/84 (8%)
Query: 56 VSYVKFLSNDE-LASASTDSTLRLWDVKENLPVRTFRGHMNEKN--FVGLTV-NSEYIAC 111
VS+VKF N + + +A+ D+TL+LWD + ++T+ GH NEK F +V ++I
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 257
Query: 112 GSESNEVYVYH---KEISKPVTWH 132
GSE N VY+++ KEI + + H
Sbjct: 258 GSEDNLVYIWNLQTKEIVQKLQGH 281
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Query: 38 YIAKYQSTAPCVHGHKKAVSYVKFLSNDEL-ASASTDSTLRLWDVKENLPVRTFRGHMNE 96
Y K++ T + GHK +S V + S+ L SAS D TL++WDV ++T +GH N
Sbjct: 56 YDGKFEKT---ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY 112
Query: 97 KNFVGLTVNSEYIACGSESNEVYVYHKEISK 127
S I GS V ++ + K
Sbjct: 113 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGK 143
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Query: 37 NYIAKYQSTAPCVHGHKKAVSYVKFLSNDE-LASASTDSTLRLWDVKENLPVRTFRGHMN 95
NY K+ + GH KAVS VKF N E LAS+S D +++W + +T GH
Sbjct: 15 NYALKFT-----LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 69
Query: 96 EKNFVGLTVNSEYIACGSESNEVYVY 121
+ V + +S + S+ + ++
Sbjct: 70 GISDVAWSSDSNLLVSASDDKTLKIW 95
Score = 30.8 bits (68), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 19/98 (19%)
Query: 81 VKENLPVR-TFRGHMNEKNFVGLTVNSEYIACGSESNEVYV---YHKEISKPVTWHRFSS 136
VK N ++ T GH + V + N E++A S + + Y + K ++ H+
Sbjct: 12 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG- 70
Query: 137 PDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKV 174
IS V W SDS +++A+ T+K+
Sbjct: 71 --------------ISDVAWSSDSNLLVSASDDKTLKI 94
Score = 26.6 bits (57), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 49 VHGHKKAVSYVKFLSNDEL-ASASTDSTLRLWDVKENLPVRTFRGH 93
+ GH V F L S S D ++R+WDVK ++T H
Sbjct: 106 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 151
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 51/84 (60%), Gaps = 7/84 (8%)
Query: 56 VSYVKFLSNDE-LASASTDSTLRLWDVKENLPVRTFRGHMNEKN--FVGLTV-NSEYIAC 111
VS+VKF N + + +A+ D+TL+LWD + ++T+ GH NEK F +V ++I
Sbjct: 200 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 259
Query: 112 GSESNEVYVYH---KEISKPVTWH 132
GSE N VY+++ KEI + + H
Sbjct: 260 GSEDNLVYIWNLQTKEIVQKLQGH 283
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Query: 38 YIAKYQSTAPCVHGHKKAVSYVKFLSNDEL-ASASTDSTLRLWDVKENLPVRTFRGHMNE 96
Y K++ T + GHK +S V + S+ L SAS D TL++WDV ++T +GH N
Sbjct: 58 YDGKFEKT---ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY 114
Query: 97 KNFVGLTVNSEYIACGSESNEVYVYHKEISK 127
S I GS V ++ + K
Sbjct: 115 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGK 145
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 6/93 (6%)
Query: 30 KYNPGSSNYIAKYQSTAPCVHGHKKAVSYVKFLSNDE-LASASTDSTLRLWDVKENLPVR 88
K P NY K+ + GH KAVS VKF N E LAS+S D +++W + +
Sbjct: 10 KPTPVKPNYALKFT-----LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK 64
Query: 89 TFRGHMNEKNFVGLTVNSEYIACGSESNEVYVY 121
T GH + V + +S + S+ + ++
Sbjct: 65 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIW 97
Score = 30.8 bits (68), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 19/98 (19%)
Query: 81 VKENLPVR-TFRGHMNEKNFVGLTVNSEYIACGSESNEVYV---YHKEISKPVTWHRFSS 136
VK N ++ T GH + V + N E++A S + + Y + K ++ H+
Sbjct: 14 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG- 72
Query: 137 PDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKV 174
IS V W SDS +++A+ T+K+
Sbjct: 73 --------------ISDVAWSSDSNLLVSASDDKTLKI 96
Score = 26.9 bits (58), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Query: 49 VHGHKKAVSYVKFLSNDEL-ASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSE 107
+ GH V F L S S D ++R+WDVK ++T H + + V +
Sbjct: 108 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS 167
Query: 108 YIACGS 113
I S
Sbjct: 168 LIVSSS 173
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 51/84 (60%), Gaps = 7/84 (8%)
Query: 56 VSYVKFLSNDE-LASASTDSTLRLWDVKENLPVRTFRGHMNEKN--FVGLTV-NSEYIAC 111
VS+VKF N + + +A+ D+TL+LWD + ++T+ GH NEK F +V ++I
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 257
Query: 112 GSESNEVYVYH---KEISKPVTWH 132
GSE N VY+++ KEI + + H
Sbjct: 258 GSEDNLVYIWNLQTKEIVQKLQGH 281
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Query: 38 YIAKYQSTAPCVHGHKKAVSYVKFLSNDEL-ASASTDSTLRLWDVKENLPVRTFRGHMNE 96
Y K++ T + GHK +S V + S+ L SAS D TL++WDV ++T +GH N
Sbjct: 56 YDGKFEKT---ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY 112
Query: 97 KNFVGLTVNSEYIACGSESNEVYVYHKEISK 127
S I GS V ++ + K
Sbjct: 113 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGK 143
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Query: 37 NYIAKYQSTAPCVHGHKKAVSYVKFLSNDE-LASASTDSTLRLWDVKENLPVRTFRGHMN 95
NY K+ + GH KAVS VKF N E LAS+S D +++W + +T GH
Sbjct: 15 NYALKFT-----LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 69
Query: 96 EKNFVGLTVNSEYIACGSESNEVYVY 121
+ V + +S + S+ + ++
Sbjct: 70 GISDVAWSSDSNLLVSASDDKTLKIW 95
Score = 30.8 bits (68), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 19/98 (19%)
Query: 81 VKENLPVR-TFRGHMNEKNFVGLTVNSEYIACGSESNEVYV---YHKEISKPVTWHRFSS 136
VK N ++ T GH + V + N E++A S + + Y + K ++ H+
Sbjct: 12 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG- 70
Query: 137 PDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKV 174
IS V W SDS +++A+ T+K+
Sbjct: 71 --------------ISDVAWSSDSNLLVSASDDKTLKI 94
Score = 26.6 bits (57), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 49 VHGHKKAVSYVKFLSNDEL-ASASTDSTLRLWDVKENLPVRTFRGH 93
+ GH V F L S S D ++R+WDVK ++T H
Sbjct: 106 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 151
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 51/84 (60%), Gaps = 7/84 (8%)
Query: 56 VSYVKFLSNDE-LASASTDSTLRLWDVKENLPVRTFRGHMNEKN--FVGLTV-NSEYIAC 111
VS+VKF N + + +A+ D+TL+LWD + ++T+ GH NEK F +V ++I
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 257
Query: 112 GSESNEVYVYH---KEISKPVTWH 132
GSE N VY+++ KEI + + H
Sbjct: 258 GSEDNLVYIWNLQTKEIVQKLQGH 281
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Query: 38 YIAKYQSTAPCVHGHKKAVSYVKFLSNDEL-ASASTDSTLRLWDVKENLPVRTFRGHMNE 96
Y K++ T + GHK +S V + S+ L SAS D TL++WDV ++T +GH N
Sbjct: 56 YDGKFEKT---ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY 112
Query: 97 KNFVGLTVNSEYIACGSESNEVYVYHKEISK 127
S I GS V ++ + K
Sbjct: 113 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGK 143
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Query: 37 NYIAKYQSTAPCVHGHKKAVSYVKFLSNDE-LASASTDSTLRLWDVKENLPVRTFRGHMN 95
NY K+ + GH KAVS VKF N E LA++S D +++W + +T GH
Sbjct: 15 NYALKFT-----LAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKL 69
Query: 96 EKNFVGLTVNSEYIACGSESNEVYVY 121
+ V + +S + S+ + ++
Sbjct: 70 GISDVAWSSDSNLLVSASDDKTLKIW 95
Score = 30.8 bits (68), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 19/98 (19%)
Query: 81 VKENLPVR-TFRGHMNEKNFVGLTVNSEYIACGSESNEVYV---YHKEISKPVTWHRFSS 136
VK N ++ T GH + V + N E++A S + + Y + K ++ H+
Sbjct: 12 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLG- 70
Query: 137 PDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKV 174
IS V W SDS +++A+ T+K+
Sbjct: 71 --------------ISDVAWSSDSNLLVSASDDKTLKI 94
Score = 26.6 bits (57), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 49 VHGHKKAVSYVKFLSNDEL-ASASTDSTLRLWDVKENLPVRTFRGH 93
+ GH V F L S S D ++R+WDVK ++T H
Sbjct: 106 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 151
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 51/84 (60%), Gaps = 7/84 (8%)
Query: 56 VSYVKFLSNDE-LASASTDSTLRLWDVKENLPVRTFRGHMNEKN--FVGLTV-NSEYIAC 111
VS+VKF N + + +A+ D+TL+LWD + ++T+ GH NEK F +V ++I
Sbjct: 196 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 255
Query: 112 GSESNEVYVYH---KEISKPVTWH 132
GSE N VY+++ KEI + + H
Sbjct: 256 GSEDNLVYIWNLQTKEIVQKLQGH 279
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Query: 38 YIAKYQSTAPCVHGHKKAVSYVKFLSNDEL-ASASTDSTLRLWDVKENLPVRTFRGHMNE 96
Y K++ T + GHK +S V + S+ L SAS D TL++WDV ++T +GH N
Sbjct: 54 YDGKFEKT---ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY 110
Query: 97 KNFVGLTVNSEYIACGSESNEVYVYHKEISK 127
S I GS V ++ + K
Sbjct: 111 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGK 141
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 6/93 (6%)
Query: 30 KYNPGSSNYIAKYQSTAPCVHGHKKAVSYVKFLSNDE-LASASTDSTLRLWDVKENLPVR 88
K P NY K+ + GH KAVS VKF N E LAS+S D +++W + +
Sbjct: 6 KPTPVKPNYALKFT-----LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK 60
Query: 89 TFRGHMNEKNFVGLTVNSEYIACGSESNEVYVY 121
T GH + V + +S + S+ + ++
Sbjct: 61 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIW 93
Score = 30.8 bits (68), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 19/98 (19%)
Query: 81 VKENLPVR-TFRGHMNEKNFVGLTVNSEYIACGSESNEVYV---YHKEISKPVTWHRFSS 136
VK N ++ T GH + V + N E++A S + + Y + K ++ H+
Sbjct: 10 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG- 68
Query: 137 PDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKV 174
IS V W SDS +++A+ T+K+
Sbjct: 69 --------------ISDVAWSSDSNLLVSASDDKTLKI 92
Score = 26.9 bits (58), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Query: 49 VHGHKKAVSYVKFLSNDEL-ASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSE 107
+ GH V F L S S D ++R+WDVK ++T H + + V +
Sbjct: 104 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS 163
Query: 108 YIACGS 113
I S
Sbjct: 164 LIVSSS 169
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 51/84 (60%), Gaps = 7/84 (8%)
Query: 56 VSYVKFLSNDE-LASASTDSTLRLWDVKENLPVRTFRGHMNEKN--FVGLTV-NSEYIAC 111
VS+VKF N + + +A+ D+TL+LWD + ++T+ GH NEK F +V ++I
Sbjct: 201 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 260
Query: 112 GSESNEVYVYH---KEISKPVTWH 132
GSE N VY+++ KEI + + H
Sbjct: 261 GSEDNLVYIWNLQTKEIVQKLQGH 284
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Query: 38 YIAKYQSTAPCVHGHKKAVSYVKFLSNDEL-ASASTDSTLRLWDVKENLPVRTFRGHMNE 96
Y K++ T + GHK +S V + S+ L SAS D TL++WDV ++T +GH N
Sbjct: 59 YDGKFEKT---ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY 115
Query: 97 KNFVGLTVNSEYIACGSESNEVYVYHKEISK 127
S I GS V ++ + K
Sbjct: 116 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGK 146
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 6/93 (6%)
Query: 30 KYNPGSSNYIAKYQSTAPCVHGHKKAVSYVKFLSNDE-LASASTDSTLRLWDVKENLPVR 88
K P NY K+ + GH KAVS VKF N E LAS+S D +++W + +
Sbjct: 11 KPTPVKPNYALKFT-----LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK 65
Query: 89 TFRGHMNEKNFVGLTVNSEYIACGSESNEVYVY 121
T GH + V + +S + S+ + ++
Sbjct: 66 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIW 98
Score = 30.8 bits (68), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 19/98 (19%)
Query: 81 VKENLPVR-TFRGHMNEKNFVGLTVNSEYIACGSESNEVYV---YHKEISKPVTWHRFSS 136
VK N ++ T GH + V + N E++A S + + Y + K ++ H+
Sbjct: 15 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG- 73
Query: 137 PDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKV 174
IS V W SDS +++A+ T+K+
Sbjct: 74 --------------ISDVAWSSDSNLLVSASDDKTLKI 97
Score = 26.9 bits (58), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Query: 49 VHGHKKAVSYVKFLSNDEL-ASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSE 107
+ GH V F L S S D ++R+WDVK ++T H + + V +
Sbjct: 109 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS 168
Query: 108 YIACGS 113
I S
Sbjct: 169 LIVSSS 174
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 51/84 (60%), Gaps = 7/84 (8%)
Query: 56 VSYVKFLSNDE-LASASTDSTLRLWDVKENLPVRTFRGHMNEKN--FVGLTV-NSEYIAC 111
VS+VKF N + + +A+ D+TL+LWD + ++T+ GH NEK F +V ++I
Sbjct: 194 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 253
Query: 112 GSESNEVYVYH---KEISKPVTWH 132
GSE N VY+++ KEI + + H
Sbjct: 254 GSEDNLVYIWNLQTKEIVQKLQGH 277
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Query: 38 YIAKYQSTAPCVHGHKKAVSYVKFLSNDEL-ASASTDSTLRLWDVKENLPVRTFRGHMNE 96
Y K++ T + GHK +S V + S+ L SAS D TL++WDV ++T +GH N
Sbjct: 52 YDGKFEKT---ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY 108
Query: 97 KNFVGLTVNSEYIACGSESNEVYVYHKEISK 127
S I GS V ++ + K
Sbjct: 109 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGK 139
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 6/90 (6%)
Query: 33 PGSSNYIAKYQSTAPCVHGHKKAVSYVKFLSNDE-LASASTDSTLRLWDVKENLPVRTFR 91
P NY K+ + GH KAVS VKF N E LAS+S D +++W + +T
Sbjct: 7 PVKPNYALKFT-----LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS 61
Query: 92 GHMNEKNFVGLTVNSEYIACGSESNEVYVY 121
GH + V + +S + S+ + ++
Sbjct: 62 GHKLGISDVAWSSDSNLLVSASDDKTLKIW 91
Score = 30.8 bits (68), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 19/98 (19%)
Query: 81 VKENLPVR-TFRGHMNEKNFVGLTVNSEYIACGSESNEVYV---YHKEISKPVTWHRFSS 136
VK N ++ T GH + V + N E++A S + + Y + K ++ H+
Sbjct: 8 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG- 66
Query: 137 PDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKV 174
IS V W SDS +++A+ T+K+
Sbjct: 67 --------------ISDVAWSSDSNLLVSASDDKTLKI 90
Score = 26.6 bits (57), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Query: 49 VHGHKKAVSYVKFLSNDEL-ASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSE 107
+ GH V F L S S D ++R+WDVK ++T H + + V +
Sbjct: 102 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS 161
Query: 108 YIACGS 113
I S
Sbjct: 162 LIVSSS 167
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 51/84 (60%), Gaps = 7/84 (8%)
Query: 56 VSYVKFLSNDE-LASASTDSTLRLWDVKENLPVRTFRGHMNEKN--FVGLTV-NSEYIAC 111
VS+VKF N + + +A+ D+TL+LWD + ++T+ GH NEK F +V ++I
Sbjct: 195 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 254
Query: 112 GSESNEVYVYH---KEISKPVTWH 132
GSE N VY+++ KEI + + H
Sbjct: 255 GSEDNLVYIWNLQTKEIVQKLQGH 278
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Query: 38 YIAKYQSTAPCVHGHKKAVSYVKFLSNDEL-ASASTDSTLRLWDVKENLPVRTFRGHMNE 96
Y K++ T + GHK +S V + S+ L SAS D TL++WDV ++T +GH N
Sbjct: 53 YDGKFEKT---ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY 109
Query: 97 KNFVGLTVNSEYIACGSESNEVYVYHKEISK 127
S I GS V ++ + K
Sbjct: 110 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGK 140
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 6/93 (6%)
Query: 30 KYNPGSSNYIAKYQSTAPCVHGHKKAVSYVKFLSNDE-LASASTDSTLRLWDVKENLPVR 88
K P NY K+ + GH KAVS VKF N E LAS+S D +++W + +
Sbjct: 5 KPTPVKPNYALKFT-----LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK 59
Query: 89 TFRGHMNEKNFVGLTVNSEYIACGSESNEVYVY 121
T GH + V + +S + S+ + ++
Sbjct: 60 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIW 92
Score = 30.8 bits (68), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 19/98 (19%)
Query: 81 VKENLPVR-TFRGHMNEKNFVGLTVNSEYIACGSESNEVYV---YHKEISKPVTWHRFSS 136
VK N ++ T GH + V + N E++A S + + Y + K ++ H+
Sbjct: 9 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG- 67
Query: 137 PDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKV 174
IS V W SDS +++A+ T+K+
Sbjct: 68 --------------ISDVAWSSDSNLLVSASDDKTLKI 91
Score = 26.9 bits (58), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Query: 49 VHGHKKAVSYVKFLSNDEL-ASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSE 107
+ GH V F L S S D ++R+WDVK ++T H + + V +
Sbjct: 103 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS 162
Query: 108 YIACGS 113
I S
Sbjct: 163 LIVSSS 168
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 51/84 (60%), Gaps = 7/84 (8%)
Query: 56 VSYVKFLSNDE-LASASTDSTLRLWDVKENLPVRTFRGHMNEKN--FVGLTV-NSEYIAC 111
VS+VKF N + + +A+ D+TL+LWD + ++T+ GH NEK F +V ++I
Sbjct: 195 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 254
Query: 112 GSESNEVYVYH---KEISKPVTWH 132
GSE N VY+++ KEI + + H
Sbjct: 255 GSEDNLVYIWNLQTKEIVQKLQGH 278
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Query: 38 YIAKYQSTAPCVHGHKKAVSYVKFLSNDEL-ASASTDSTLRLWDVKENLPVRTFRGHMNE 96
Y K++ T + GHK +S V + S+ L SAS D TL++WDV ++T +GH N
Sbjct: 53 YDGKFEKT---ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY 109
Query: 97 KNFVGLTVNSEYIACGSESNEVYVYHKEISK 127
S I GS V ++ + K
Sbjct: 110 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGK 140
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 6/93 (6%)
Query: 30 KYNPGSSNYIAKYQSTAPCVHGHKKAVSYVKFLSNDE-LASASTDSTLRLWDVKENLPVR 88
K P NY K+ + GH KAVS VKF N E LAS+S D +++W + +
Sbjct: 5 KPTPVKPNYALKFT-----LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK 59
Query: 89 TFRGHMNEKNFVGLTVNSEYIACGSESNEVYVY 121
T GH + V + +S + S+ + ++
Sbjct: 60 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIW 92
Score = 30.8 bits (68), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 19/98 (19%)
Query: 81 VKENLPVR-TFRGHMNEKNFVGLTVNSEYIACGSESNEVYV---YHKEISKPVTWHRFSS 136
VK N ++ T GH + V + N E++A S + + Y + K ++ H+
Sbjct: 9 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG- 67
Query: 137 PDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKV 174
IS V W SDS +++A+ T+K+
Sbjct: 68 --------------ISDVAWSSDSNLLVSASDDKTLKI 91
Score = 26.6 bits (57), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Query: 49 VHGHKKAVSYVKFLSNDEL-ASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSE 107
+ GH V F L S S D ++R+WDVK ++T H + + V +
Sbjct: 103 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS 162
Query: 108 YIACGS 113
I S
Sbjct: 163 LIVSSS 168
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 51/84 (60%), Gaps = 7/84 (8%)
Query: 56 VSYVKFLSNDE-LASASTDSTLRLWDVKENLPVRTFRGHMNEKN--FVGLTV-NSEYIAC 111
VS+VKF N + + +A+ D+TL+LWD + ++T+ GH NEK F +V ++I
Sbjct: 212 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 271
Query: 112 GSESNEVYVYH---KEISKPVTWH 132
GSE N VY+++ KEI + + H
Sbjct: 272 GSEDNLVYIWNLQTKEIVQKLQGH 295
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Query: 38 YIAKYQSTAPCVHGHKKAVSYVKFLSNDEL-ASASTDSTLRLWDVKENLPVRTFRGHMNE 96
Y K++ T + GHK +S V + S+ L SAS D TL++WDV ++T +GH N
Sbjct: 70 YDGKFEKT---ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY 126
Query: 97 KNFVGLTVNSEYIACGSESNEVYVYHKEISK 127
S I GS V ++ + K
Sbjct: 127 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGK 157
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 6/93 (6%)
Query: 30 KYNPGSSNYIAKYQSTAPCVHGHKKAVSYVKFLSNDE-LASASTDSTLRLWDVKENLPVR 88
K P NY K+ + GH KAVS VKF N E LAS+S D +++W + +
Sbjct: 22 KPTPVKPNYALKFT-----LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK 76
Query: 89 TFRGHMNEKNFVGLTVNSEYIACGSESNEVYVY 121
T GH + V + +S + S+ + ++
Sbjct: 77 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIW 109
Score = 30.8 bits (68), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 19/98 (19%)
Query: 81 VKENLPVR-TFRGHMNEKNFVGLTVNSEYIACGSESNEVYV---YHKEISKPVTWHRFSS 136
VK N ++ T GH + V + N E++A S + + Y + K ++ H+
Sbjct: 26 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG- 84
Query: 137 PDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKV 174
IS V W SDS +++A+ T+K+
Sbjct: 85 --------------ISDVAWSSDSNLLVSASDDKTLKI 108
Score = 26.6 bits (57), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 49 VHGHKKAVSYVKFLSNDEL-ASASTDSTLRLWDVKENLPVRTFRGH 93
+ GH V F L S S D ++R+WDVK ++T H
Sbjct: 120 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 165
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 51/84 (60%), Gaps = 7/84 (8%)
Query: 56 VSYVKFLSNDE-LASASTDSTLRLWDVKENLPVRTFRGHMNEKN--FVGLTV-NSEYIAC 111
VS+VKF N + + +A+ D+TL+LWD + ++T+ GH NEK F +V ++I
Sbjct: 219 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 278
Query: 112 GSESNEVYVYH---KEISKPVTWH 132
GSE N VY+++ KEI + + H
Sbjct: 279 GSEDNLVYIWNLQTKEIVQKLQGH 302
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Query: 38 YIAKYQSTAPCVHGHKKAVSYVKFLSNDEL-ASASTDSTLRLWDVKENLPVRTFRGHMNE 96
Y K++ T + GHK +S V + S+ L SAS D TL++WDV ++T +GH N
Sbjct: 77 YDGKFEKT---ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY 133
Query: 97 KNFVGLTVNSEYIACGSESNEVYVYHKEISK 127
S I GS V ++ + K
Sbjct: 134 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGK 164
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 6/93 (6%)
Query: 30 KYNPGSSNYIAKYQSTAPCVHGHKKAVSYVKFLSNDE-LASASTDSTLRLWDVKENLPVR 88
K P NY K+ + GH KAVS VKF N E LAS+S D +++W + +
Sbjct: 29 KPTPVKPNYALKFT-----LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK 83
Query: 89 TFRGHMNEKNFVGLTVNSEYIACGSESNEVYVY 121
T GH + V + +S + S+ + ++
Sbjct: 84 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIW 116
Score = 30.8 bits (68), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 19/98 (19%)
Query: 81 VKENLPVR-TFRGHMNEKNFVGLTVNSEYIACGSESNEVYV---YHKEISKPVTWHRFSS 136
VK N ++ T GH + V + N E++A S + + Y + K ++ H+
Sbjct: 33 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG- 91
Query: 137 PDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKV 174
IS V W SDS +++A+ T+K+
Sbjct: 92 --------------ISDVAWSSDSNLLVSASDDKTLKI 115
Score = 26.9 bits (58), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Query: 49 VHGHKKAVSYVKFLSNDEL-ASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSE 107
+ GH V F L S S D ++R+WDVK ++T H + + V +
Sbjct: 127 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS 186
Query: 108 YIACGS 113
I S
Sbjct: 187 LIVSSS 192
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 51/84 (60%), Gaps = 7/84 (8%)
Query: 56 VSYVKFLSNDE-LASASTDSTLRLWDVKENLPVRTFRGHMNEKN--FVGLTV-NSEYIAC 111
VS+VKF N + + +A+ D+TL+LWD + ++T+ GH NEK F +V ++I
Sbjct: 191 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 250
Query: 112 GSESNEVYVYH---KEISKPVTWH 132
GSE N VY+++ KEI + + H
Sbjct: 251 GSEDNLVYIWNLQTKEIVQKLQGH 274
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Query: 38 YIAKYQSTAPCVHGHKKAVSYVKFLSNDEL-ASASTDSTLRLWDVKENLPVRTFRGHMNE 96
Y K++ T + GHK +S V + S+ L SAS D TL++WDV ++T +GH N
Sbjct: 49 YDGKFEKT---ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY 105
Query: 97 KNFVGLTVNSEYIACGSESNEVYVYHKEISK 127
S I GS V ++ + K
Sbjct: 106 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGK 136
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 6/93 (6%)
Query: 30 KYNPGSSNYIAKYQSTAPCVHGHKKAVSYVKFLSNDE-LASASTDSTLRLWDVKENLPVR 88
K P NY K+ + GH KAVS VKF N E LAS+S D +++W + +
Sbjct: 1 KPTPVKPNYALKFT-----LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK 55
Query: 89 TFRGHMNEKNFVGLTVNSEYIACGSESNEVYVY 121
T GH + V + +S + S+ + ++
Sbjct: 56 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIW 88
Score = 30.8 bits (68), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 19/98 (19%)
Query: 81 VKENLPVR-TFRGHMNEKNFVGLTVNSEYIACGSESNEVYV---YHKEISKPVTWHRFSS 136
VK N ++ T GH + V + N E++A S + + Y + K ++ H+
Sbjct: 5 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG- 63
Query: 137 PDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKV 174
IS V W SDS +++A+ T+K+
Sbjct: 64 --------------ISDVAWSSDSNLLVSASDDKTLKI 87
Score = 26.9 bits (58), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Query: 49 VHGHKKAVSYVKFLSNDEL-ASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSE 107
+ GH V F L S S D ++R+WDVK ++T H + + V +
Sbjct: 99 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS 158
Query: 108 YIACGS 113
I S
Sbjct: 159 LIVSSS 164
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 51/84 (60%), Gaps = 7/84 (8%)
Query: 56 VSYVKFLSNDE-LASASTDSTLRLWDVKENLPVRTFRGHMNEKN--FVGLTV-NSEYIAC 111
VS+VKF N + + +A+ D+TL+LWD + ++T+ GH NEK F +V ++I
Sbjct: 201 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 260
Query: 112 GSESNEVYVYH---KEISKPVTWH 132
GSE N VY+++ KEI + + H
Sbjct: 261 GSEDNLVYIWNLQTKEIVQKLQGH 284
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Query: 38 YIAKYQSTAPCVHGHKKAVSYVKFLSNDEL-ASASTDSTLRLWDVKENLPVRTFRGHMNE 96
Y K++ T + GHK +S V + S+ L SAS D TL++WDV ++T +GH N
Sbjct: 59 YDGKFEKT---ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY 115
Query: 97 KNFVGLTVNSEYIACGSESNEVYVYHKEISK 127
S I GS V ++ + K
Sbjct: 116 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGK 146
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 6/93 (6%)
Query: 30 KYNPGSSNYIAKYQSTAPCVHGHKKAVSYVKFLSNDE-LASASTDSTLRLWDVKENLPVR 88
K P NY K+ + GH KAVS VKF N E LAS+S D +++W + +
Sbjct: 11 KPTPVKPNYALKFT-----LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK 65
Query: 89 TFRGHMNEKNFVGLTVNSEYIACGSESNEVYVY 121
T GH + V + +S + S+ + ++
Sbjct: 66 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIW 98
Score = 30.8 bits (68), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 19/98 (19%)
Query: 81 VKENLPVR-TFRGHMNEKNFVGLTVNSEYIACGSESNEVYV---YHKEISKPVTWHRFSS 136
VK N ++ T GH + V + N E++A S + + Y + K ++ H+
Sbjct: 15 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG- 73
Query: 137 PDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKV 174
IS V W SDS +++A+ T+K+
Sbjct: 74 --------------ISDVAWSSDSNLLVSASDDKTLKI 97
Score = 26.9 bits (58), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Query: 49 VHGHKKAVSYVKFLSNDEL-ASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSE 107
+ GH V F L S S D ++R+WDVK ++T H + + V +
Sbjct: 109 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS 168
Query: 108 YIACGS 113
I S
Sbjct: 169 LIVSSS 174
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 51/84 (60%), Gaps = 7/84 (8%)
Query: 56 VSYVKFLSNDE-LASASTDSTLRLWDVKENLPVRTFRGHMNEKN--FVGLTV-NSEYIAC 111
VS+VKF N + + +A+ D+TL+LWD + ++T+ GH NEK F +V ++I
Sbjct: 217 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 276
Query: 112 GSESNEVYVYH---KEISKPVTWH 132
GSE N VY+++ KEI + + H
Sbjct: 277 GSEDNLVYIWNLQTKEIVQKLQGH 300
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Query: 38 YIAKYQSTAPCVHGHKKAVSYVKFLSNDEL-ASASTDSTLRLWDVKENLPVRTFRGHMNE 96
Y K++ T + GHK +S V + S+ L SAS D TL++WDV ++T +GH N
Sbjct: 75 YDGKFEKT---ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY 131
Query: 97 KNFVGLTVNSEYIACGSESNEVYVYHKEISK 127
S I GS V ++ + K
Sbjct: 132 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGK 162
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 6/93 (6%)
Query: 30 KYNPGSSNYIAKYQSTAPCVHGHKKAVSYVKFLSNDE-LASASTDSTLRLWDVKENLPVR 88
K P NY K+ + GH KAVS VKF N E LAS+S D +++W + +
Sbjct: 27 KPTPVKPNYALKFT-----LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK 81
Query: 89 TFRGHMNEKNFVGLTVNSEYIACGSESNEVYVY 121
T GH + V + +S + S+ + ++
Sbjct: 82 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIW 114
Score = 30.8 bits (68), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 19/98 (19%)
Query: 81 VKENLPVR-TFRGHMNEKNFVGLTVNSEYIACGSESNEVYV---YHKEISKPVTWHRFSS 136
VK N ++ T GH + V + N E++A S + + Y + K ++ H+
Sbjct: 31 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG- 89
Query: 137 PDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKV 174
IS V W SDS +++A+ T+K+
Sbjct: 90 --------------ISDVAWSSDSNLLVSASDDKTLKI 113
Score = 26.9 bits (58), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Query: 49 VHGHKKAVSYVKFLSNDEL-ASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSE 107
+ GH V F L S S D ++R+WDVK ++T H + + V +
Sbjct: 125 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS 184
Query: 108 YIACGS 113
I S
Sbjct: 185 LIVSSS 190
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 49.7 bits (117), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 50/84 (59%), Gaps = 7/84 (8%)
Query: 56 VSYVKFLSNDE-LASASTDSTLRLWDVKENLPVRTFRGHMNEKN--FVGLTV-NSEYIAC 111
VS+VKF N + + +A+ D+ L+LWD + ++T+ GH NEK F +V ++I
Sbjct: 198 VSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 257
Query: 112 GSESNEVYVYH---KEISKPVTWH 132
GSE N VY+++ KEI + + H
Sbjct: 258 GSEDNMVYIWNLQTKEIVQKLQGH 281
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 38 YIAKYQSTAPCVHGHKKAVSYVKFLSNDEL-ASASTDSTLRLWDVKENLPVRTFRGHMNE 96
Y K++ T + GHK +S V + S+ L SAS D TL++WDV ++T +GH N
Sbjct: 56 YDGKFEKT---ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY 112
Query: 97 KNFVGLTVNSEYIACGSESNEVYVY 121
S I GS V ++
Sbjct: 113 VFCCNFNPQSNLIVSGSFDESVRIW 137
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 51 GHKKAVSYVKFLSNDE-LASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYI 109
GH KAVS VKF N E LAS+S D +++W + +T GH + V + +S +
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 83
Query: 110 ACGSESNEVYVY 121
S+ + ++
Sbjct: 84 VSASDDKTLKIW 95
Score = 29.6 bits (65), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 19/98 (19%)
Query: 81 VKENLPVR-TFRGHMNEKNFVGLTVNSEYIACGSESNEVYV---YHKEISKPVTWHRFSS 136
VK N + T GH + V + N E++A S + + Y + K ++ H+
Sbjct: 12 VKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG- 70
Query: 137 PDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKV 174
IS V W SDS +++A+ T+K+
Sbjct: 71 --------------ISDVAWSSDSNLLVSASDDKTLKI 94
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Query: 49 VHGHKKAVSYVKFLSNDEL-ASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSE 107
+ GH V F L S S D ++R+WDVK + ++T H + + V +
Sbjct: 106 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGS 165
Query: 108 YIACGS 113
I S
Sbjct: 166 LIVSSS 171
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 58/128 (45%), Gaps = 7/128 (5%)
Query: 51 GHKKAVSYVKFLSNDELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLT--VNSEY 108
GH V +K+ L S STD T+R+WD+K+ F GH + + + N +Y
Sbjct: 160 GHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKY 219
Query: 109 IACGSESNEVYVYH--KEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTA 166
I GS N ++V+ KE S P P + T E+ YF+ + + ++ T
Sbjct: 220 IVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEE-NPYFVGVL--RGHXASVRTV 276
Query: 167 NSQGTIKV 174
+ G I V
Sbjct: 277 SGHGNIVV 284
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 69 SASTDSTLRLWDVKENLPVRTFRGH 93
SAS D+T+R+WD++ T +GH
Sbjct: 327 SASXDTTIRIWDLENGELXYTLQGH 351
Score = 26.6 bits (57), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 7/91 (7%)
Query: 6 VKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKYQSTAPCVHGHKKAVSYVKFLSND 65
+ VW +E+SV + + + V + P + Y + GH +V V N
Sbjct: 229 LHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFV------GVLRGHXASVRTVSGHGN- 281
Query: 66 ELASASTDSTLRLWDVKENLPVRTFRGHMNE 96
+ S S D+TL +WDV + + GH +
Sbjct: 282 IVVSGSYDNTLIVWDVAQXKCLYILSGHTDR 312
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 58/128 (45%), Gaps = 7/128 (5%)
Query: 51 GHKKAVSYVKFLSNDELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLT--VNSEY 108
GH V +K+ L S STD T+R+WD+K+ F GH + + + N +Y
Sbjct: 160 GHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKY 219
Query: 109 IACGSESNEVYVYH--KEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTA 166
I GS N ++V+ KE S P P + T E+ YF+ + + ++ T
Sbjct: 220 IVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEE-NPYFVGVL--RGHMASVRTV 276
Query: 167 NSQGTIKV 174
+ G I V
Sbjct: 277 SGHGNIVV 284
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 69 SASTDSTLRLWDVKENLPVRTFRGH 93
SAS D+T+R+WD++ + T +GH
Sbjct: 327 SASMDTTIRIWDLENGELMYTLQGH 351
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 49 VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSE 107
+HGH VS V + N D + SAS D T+++W+V+ V+TF GH V +
Sbjct: 188 MHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGT 247
Query: 108 YIACGSESNEVYVY 121
IA S V V+
Sbjct: 248 LIASCSNDQTVRVW 261
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 8/102 (7%)
Query: 49 VHGHKKAVSYVKF-LSNDELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSE 107
+ GH +V + F S LAS S D T++LWD + +RT GH + + V + N +
Sbjct: 146 LKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGD 205
Query: 108 YIACGSESNEVYVYH-------KEISKPVTWHRFSSPDMDDT 142
+I S + ++ K + W R P+ D T
Sbjct: 206 HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGT 247
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Query: 44 STAPCVH---GHKKAVSYVKFLSNDE-LASASTDSTLRLWDVKENLPVRTFRGHMNEKNF 99
ST C+ GH V V F S + + S + D TLR+WD K ++T H +
Sbjct: 326 STGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTS 385
Query: 100 VGLTVNSEYIACGSESNEVYVY 121
+ + Y+ GS V V+
Sbjct: 386 LDFHKTAPYVVTGSVDQTVKVW 407
Score = 30.4 bits (67), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 48/111 (43%), Gaps = 18/111 (16%)
Query: 67 LASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVY---HK 123
L S S D T+++WDV + + T GH N V ++I ++ + V+ +K
Sbjct: 311 LLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK 370
Query: 124 EISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKV 174
K + H +F++++ + +P ++T + T+KV
Sbjct: 371 RCMKTLNAH---------------EHFVTSLDFHKTAPYVVTGSVDQTVKV 406
Score = 30.4 bits (67), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 51 GHKKAVSYVKFLS-NDELASASTDSTLRLWDVKENLPVRTFRGHMN 95
GH+ V+ V F + SAS D+T+++WD + RT +GH +
Sbjct: 106 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTD 151
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 49 VHGHKKAVSYVKFLSNDELA-SASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSE 107
+ GH VS V S+ + A S S D TLRLWD+ R F GH + V + ++
Sbjct: 59 LRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNR 118
Query: 108 YIACGSESNEVYVYH 122
I GS + +++
Sbjct: 119 QIVSGSRDKTIKLWN 133
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 49 VHGHKKAVSYVKFLSNDELA-SASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSE 107
+ GH VS V S+ + A S S D TLRLWD+ R F GH + V + ++
Sbjct: 82 LRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNR 141
Query: 108 YIACGSESNEVYVYH 122
I GS + +++
Sbjct: 142 QIVSGSRDKTIKLWN 156
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 51/117 (43%), Gaps = 2/117 (1%)
Query: 28 CVKYNPGSSNYIAKYQSTAPCVHGHKKAVSYVKFLSNDELASASTDSTLRLWDVK-ENLP 86
CV ++ + I+ + S P H + L+ + S S D+T+RLWD++ +
Sbjct: 182 CVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRA 241
Query: 87 VRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTD 143
VRT+ GH + N V + + GS+ ++ + + PD +D +
Sbjct: 242 VRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYN-REPDRNDNE 297
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 61/157 (38%), Gaps = 33/157 (21%)
Query: 6 VKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIA--------------------KYQST 45
V++W R L + ++ + V +PG YIA + S
Sbjct: 189 VRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSE 248
Query: 46 APCVHGHKKAVSYVKFLSNDE-LASASTDSTLRLWDVKE-------NLPVR-----TFRG 92
GHK +V V F + + + S S D +++LW+++ P T+ G
Sbjct: 249 NESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIG 308
Query: 93 HMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPV 129
H + V T N EYI GS+ V + K+ P+
Sbjct: 309 HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL 345
Score = 34.3 bits (77), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 49 VHGHKKAV-SYVKFLSNDELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSE 107
+ GH++ + S F S D+L S S D T+R+WD++ T + +
Sbjct: 161 LQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGK 220
Query: 108 YIACGSESNEVYVYHKE 124
YIA GS V V+ E
Sbjct: 221 YIAAGSLDRAVRVWDSE 237
Score = 33.1 bits (74), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 51 GHKKAVSYVKFLSNDE-LASASTDSTLRLWDVKENLPVRTFRGHMN 95
GHK V V NDE + S S D + WD K P+ +GH N
Sbjct: 308 GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN 353
Score = 26.9 bits (58), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/55 (21%), Positives = 26/55 (47%)
Query: 67 LASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVY 121
LA+ + D +R+WD++ V +GH + + + + + GS V ++
Sbjct: 138 LATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIW 192
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 60/132 (45%), Gaps = 15/132 (11%)
Query: 48 CVHGHKKAVSYVKFLSNDELA-SASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTV-- 104
C + H VS V LS+ A S S D +++WD+ + + + ++R H + V +
Sbjct: 122 CKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHK 181
Query: 105 NSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCW-KSDSPTM 163
+S +++C SE N + ++ KP + S+P Y +++ W S
Sbjct: 182 DSVFLSC-SEDNRILLWDTRCPKPASQIGCSAP----------GYLPTSLAWHPQQSEVF 230
Query: 164 LTANSQGTIKVL 175
+ + GT+ ++
Sbjct: 231 VFGDENGTVSLV 242
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 38.1 bits (87), Expect = 0.002, Method: Composition-based stats.
Identities = 32/127 (25%), Positives = 61/127 (48%), Gaps = 19/127 (14%)
Query: 51 GHKKAVSYVKFLSNDE-LASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYI 109
GH +V V F +D+ +ASAS D T++LW+ L ++T GH + V + + + I
Sbjct: 424 GHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQL-LQTLTGHSSSVRGVAFSPDGQTI 482
Query: 110 ACGSESNEVYVYHK--EISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTAN 167
A S+ V ++++ ++ + +T H S + V + D T+ +A+
Sbjct: 483 ASASDDKTVKLWNRNGQLLQTLTGHSSS---------------VRGVAFSPDGQTIASAS 527
Query: 168 SQGTIKV 174
T+K+
Sbjct: 528 DDKTVKL 534
Score = 37.0 bits (84), Expect = 0.006, Method: Composition-based stats.
Identities = 31/127 (24%), Positives = 62/127 (48%), Gaps = 19/127 (14%)
Query: 51 GHKKAVSYVKFLSNDE-LASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYI 109
GH +V V F + + +ASAS D T++LW+ L ++T GH + V + + + I
Sbjct: 178 GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQL-LQTLTGHSSSVRGVAFSPDGQTI 236
Query: 110 ACGSESNEVYVYHK--EISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTAN 167
A S+ V ++++ ++ + +T H S ++ V ++ D T+ +A+
Sbjct: 237 ASASDDKTVKLWNRNGQLLQTLTGHSSS---------------VNGVAFRPDGQTIASAS 281
Query: 168 SQGTIKV 174
T+K+
Sbjct: 282 DDKTVKL 288
Score = 34.7 bits (78), Expect = 0.027, Method: Composition-based stats.
Identities = 31/127 (24%), Positives = 60/127 (47%), Gaps = 19/127 (14%)
Query: 51 GHKKAVSYVKFLSNDE-LASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYI 109
GH +V V F + + +ASAS D T++LW+ L ++T GH + V + + + I
Sbjct: 342 GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQL-LQTLTGHSSSVRGVAFSPDGQTI 400
Query: 110 ACGSESNEVYVYHK--EISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTAN 167
A S+ V ++++ ++ + +T H S + V + D T+ +A+
Sbjct: 401 ASASDDKTVKLWNRNGQLLQTLTGHSSS---------------VWGVAFSPDDQTIASAS 445
Query: 168 SQGTIKV 174
T+K+
Sbjct: 446 DDKTVKL 452
Score = 34.3 bits (77), Expect = 0.039, Method: Composition-based stats.
Identities = 31/127 (24%), Positives = 60/127 (47%), Gaps = 19/127 (14%)
Query: 51 GHKKAVSYVKFLSNDE-LASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYI 109
GH +V V F + + +ASAS D T++LW+ L ++T GH + V + + + I
Sbjct: 96 GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL-LQTLTGHSSSVWGVAFSPDGQTI 154
Query: 110 ACGSESNEVYVYHK--EISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTAN 167
A S+ V ++++ ++ + +T H S + V + D T+ +A+
Sbjct: 155 ASASDDKTVKLWNRNGQLLQTLTGHSSS---------------VWGVAFSPDGQTIASAS 199
Query: 168 SQGTIKV 174
T+K+
Sbjct: 200 DDKTVKL 206
Score = 34.3 bits (77), Expect = 0.040, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 51 GHKKAVSYVKFLSNDE-LASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYI 109
GH +V+ V F + + +ASAS D T++LW+ L ++T GH + V + + + I
Sbjct: 260 GHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQL-LQTLTGHSSSVWGVAFSPDGQTI 318
Query: 110 ACGSESNEVYVYHK 123
A S+ V ++++
Sbjct: 319 ASASDDKTVKLWNR 332
Score = 33.1 bits (74), Expect = 0.082, Method: Composition-based stats.
Identities = 30/129 (23%), Positives = 60/129 (46%), Gaps = 19/129 (14%)
Query: 49 VHGHKKAVSYVKFLSNDE-LASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSE 107
+ H +V V F + + +ASAS D T++LW+ L ++T GH + V + + +
Sbjct: 12 LEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL-LQTLTGHSSSVWGVAFSPDGQ 70
Query: 108 YIACGSESNEVYVYHK--EISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLT 165
IA S+ V ++++ ++ + +T H S + V + D T+ +
Sbjct: 71 TIASASDDKTVKLWNRNGQLLQTLTGHSSS---------------VRGVAFSPDGQTIAS 115
Query: 166 ANSQGTIKV 174
A+ T+K+
Sbjct: 116 ASDDKTVKL 124
Score = 32.0 bits (71), Expect = 0.18, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 51 GHKKAVSYVKFLSNDE-LASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYI 109
GH +V V F + + +ASAS D T++LW+ L ++T GH + V + + + I
Sbjct: 506 GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL-LQTLTGHSSSVWGVAFSPDGQTI 564
Query: 110 ACGSESNEVYVYH 122
A S V +++
Sbjct: 565 ASASSDKTVKLWN 577
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Query: 51 GHKKAVSYVKFLSNDE-LASASTDSTLRLWDVK 82
GH +V++ +F +DE LAS S D TLRLWDV+
Sbjct: 748 GHTNSVNHCRFSPDDELLASCSADGTLRLWDVR 780
Score = 33.1 bits (74), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 20/102 (19%), Positives = 48/102 (47%), Gaps = 3/102 (2%)
Query: 66 ELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEI 125
+ +S S D T ++W P+ +GH +++ +A G ++ E+ +++ +
Sbjct: 1106 KFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWN--V 1163
Query: 126 SKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTAN 167
S H + +++ G + ++ VC+ DS T+++A
Sbjct: 1164 SDGQLLHSCAPISVEEGTATHGGW-VTDVCFSPDSKTLVSAG 1204
Score = 30.8 bits (68), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 49 VHGHKKAVSYVKFLSNDE-LASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSE 107
+ H+ V F S+D +A+ S D +++WD V T+ H + N T S
Sbjct: 660 IKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSN 719
Query: 108 YIACGSESNEVYV 120
++ + SN+ ++
Sbjct: 720 HLLLATGSNDFFL 732
Score = 30.8 bits (68), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 5/103 (4%)
Query: 67 LASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEIS 126
LA+ S D L+LWD+ + T GH N N + + E +A S + ++ +
Sbjct: 723 LATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSA 782
Query: 127 ---KPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTA 166
K + RF +D ED + W +D ++ A
Sbjct: 783 NERKSINVKRFFLSS-EDPPEDV-EVIVKCCSWSADGDKIIVA 823
Score = 30.4 bits (67), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 24/31 (77%), Gaps = 1/31 (3%)
Query: 51 GHKKAVSYVKFLSNDE-LASASTDSTLRLWD 80
GHKKAV +++F ++ + L S+S DS +++W+
Sbjct: 1008 GHKKAVRHIQFTADGKTLISSSEDSVIQVWN 1038
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Query: 51 GHKKAVSYVKFLSNDELAS-ASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYI 109
GH + Y F D LA A + + LW++ L V RGH++ + V + +
Sbjct: 845 GHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSF 904
Query: 110 ACGSESNEVYVY 121
S+ + V+
Sbjct: 905 LTASDDQTIRVW 916
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 49 VHGHKKAVSYVKFLSNDELASASTDSTLRLWDVKENLPVRTFRGH 93
+ H++ V + L + L S S D T+++W+V R F H
Sbjct: 1047 LQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCH 1091
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Query: 51 GHKKAVSYVKFLSNDE-LASASTDSTLRLWDVK 82
GH +V++ +F +DE LAS S D TLRLWDV+
Sbjct: 741 GHTNSVNHCRFSPDDELLASCSADGTLRLWDVR 773
Score = 33.1 bits (74), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 20/102 (19%), Positives = 48/102 (47%), Gaps = 3/102 (2%)
Query: 66 ELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEI 125
+ +S S D T ++W P+ +GH +++ +A G ++ E+ +++ +
Sbjct: 1099 KFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWN--V 1156
Query: 126 SKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTAN 167
S H + +++ G + ++ VC+ DS T+++A
Sbjct: 1157 SDGQLLHSCAPISVEEGTATHGGW-VTDVCFSPDSKTLVSAG 1197
Score = 30.8 bits (68), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 49 VHGHKKAVSYVKFLSNDE-LASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSE 107
+ H+ V F S+D +A+ S D +++WD V T+ H + N T S
Sbjct: 653 IKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSN 712
Query: 108 YIACGSESNEVYV 120
++ + SN+ ++
Sbjct: 713 HLLLATGSNDFFL 725
Score = 30.8 bits (68), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 5/103 (4%)
Query: 67 LASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEIS 126
LA+ S D L+LWD+ + T GH N N + + E +A S + ++ +
Sbjct: 716 LATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSA 775
Query: 127 ---KPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTA 166
K + RF +D ED + W +D ++ A
Sbjct: 776 NERKSINVKRFFLSS-EDPPEDV-EVIVKCCSWSADGDKIIVA 816
Score = 30.4 bits (67), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 24/31 (77%), Gaps = 1/31 (3%)
Query: 51 GHKKAVSYVKFLSNDE-LASASTDSTLRLWD 80
GHKKAV +++F ++ + L S+S DS +++W+
Sbjct: 1001 GHKKAVRHIQFTADGKTLISSSEDSVIQVWN 1031
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Query: 51 GHKKAVSYVKFLSNDELAS-ASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYI 109
GH + Y F D LA A + + LW++ L V RGH++ + V + +
Sbjct: 838 GHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSF 897
Query: 110 ACGSESNEVYVY 121
S+ + V+
Sbjct: 898 LTASDDQTIRVW 909
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 49 VHGHKKAVSYVKFLSNDELASASTDSTLRLWDVKENLPVRTFRGH 93
+ H++ V + L + L S S D T+++W+V R F H
Sbjct: 1040 LQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCH 1084
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 67/171 (39%), Gaps = 41/171 (23%)
Query: 5 KVKVWCTRQEASVL---NIDMKANICCVKYNPGSSNYIAKYQSTAPCVHGHKKAVSYVKF 61
K K+W +L + D K + VKY+ + I TA HKKA+ V +
Sbjct: 14 KEKIWSFDFSQGILATGSTDRKIKLVSVKYDDFT--LIDVLDETA-----HKKAIRSVAW 66
Query: 62 LSNDEL-ASASTDSTLRLWDVKENLPVRTFR--------GHMNEKNFVGLTVNSEYIACG 112
+ L A+ S DST+ +W KE RTF GH NE V + + Y+A
Sbjct: 67 RPHTSLLAAGSFDSTVSIW-AKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATC 125
Query: 113 SESNEVYVY-----------------HKEISKPVTWH----RFSSPDMDDT 142
S V+++ H + K V WH +S DDT
Sbjct: 126 SRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDT 176
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 49 VHGHKKAVSYVKFLSNDELA-SASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSE 107
+ GH VS V +N A SAS D +LRLW+++ F GH + V + ++
Sbjct: 63 LEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNR 122
Query: 108 YIACGSESNEVYVYH 122
I G N + V++
Sbjct: 123 QIVSGGRDNALRVWN 137
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 8/70 (11%)
Query: 34 GSSNYIAKYQSTAPCVH-----GHKKAVSYVKF---LSNDELASASTDSTLRLWDVKENL 85
G N + + C+H H VS V+F L + S D+ +++WD+
Sbjct: 128 GRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGR 187
Query: 86 PVRTFRGHMN 95
V +GH N
Sbjct: 188 LVTDLKGHTN 197
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 51 GHKKAVSYVKFLSNDELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIA 110
GH+ AV+ V F + + SAS D T+++W+ VRT GH ++ L +
Sbjct: 254 GHRAAVNVVDF-DDKYIVSASGDRTIKVWNTSTCEFVRTLNGH--KRGIACLQYRDRLVV 310
Query: 111 CGSESNEVYVYHKE 124
GS N + ++ E
Sbjct: 311 SGSSDNTIRLWDIE 324
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 50/93 (53%), Gaps = 8/93 (8%)
Query: 34 GSSNYIAKYQSTAPC-----VHGHKKAVSYVKFLSNDELASASTDSTLRLWDVKENLPVR 88
S + K +T+ C ++GHK+ ++ +++ + + S S+D+T+RLWD++ +R
Sbjct: 272 ASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY-RDRLVVSGSSDNTIRLWDIECGACLR 330
Query: 89 TFRGHMNEKNFVGLTVNSEYIACGSESNEVYVY 121
GH E+ + +++ I G+ ++ V+
Sbjct: 331 VLEGH--EELVRCIRFDNKRIVSGAYDGKIKVW 361
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 51 GHKKAVSYVKFLSNDELA-SASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYI 109
GH V V S+ + A S S D LRLWD+ + R F GH + V ++++ I
Sbjct: 428 GHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQI 487
Query: 110 ACGSESNEVYVYH 122
S + +++
Sbjct: 488 VSASRDRTIKLWN 500
Score = 30.0 bits (66), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 50 HGHKKAVSYVKFLSN---DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNS 106
GH+ VS V+F N + SAS D T+++W++ T GH + V ++ +
Sbjct: 514 EGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDG 573
Query: 107 EYIACGSESNEVYVY 121
A G + V ++
Sbjct: 574 SLCASGGKDGVVLLW 588
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/161 (20%), Positives = 71/161 (44%), Gaps = 24/161 (14%)
Query: 24 ANICCVKYN-----PGSSNYIAKY--QSTAPCVH---GHKKAVSYVKFLSNDELASASTD 73
A + CV+Y+ G+ +++ K T C+H GH V ++F + S S D
Sbjct: 240 AAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF-DGIHVVSGSLD 298
Query: 74 STLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHR 133
+++R+WDV+ + T GH + + G+ + + G+ + V ++ +I
Sbjct: 299 TSIRVWDVETGNCIHTLTGHQSLTS--GMELKDNILVSGNADSTVKIW--DIKTGQCLQT 354
Query: 134 FSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKV 174
P+ + + C + + ++T++ GT+K+
Sbjct: 355 LQGPNKHQS---------AVTCLQFNKNFVITSSDDGTVKL 386
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Query: 45 TAPCVH---GHKKAVSYVKFLSNDELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVG 101
T C+H GH+ S ++ L ++ L S + DST+++WD+K ++T +G ++ V
Sbjct: 308 TGNCIHTLTGHQSLTSGME-LKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVT 366
Query: 102 -LTVNSEYIACGSESNEVYVY 121
L N ++ S+ V ++
Sbjct: 367 CLQFNKNFVITSSDDGTVKLW 387
Score = 33.5 bits (75), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 11/53 (20%)
Query: 42 YQSTAPCVHGHKKAVSYVKFLSNDELASASTDSTLRLWDVKENLPVRTFRGHM 94
+ ST C+H H+K V S S D+TLR+WD++ + GH+
Sbjct: 198 HTSTVRCMHLHEKRV-----------VSGSRDATLRVWDIETGQCLHVLMGHV 239
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 8/108 (7%)
Query: 25 NICCVKYNPGSSNYIAKYQS--TAPCVH---GHKKAVSYVKFLSNDELASASTDSTLRLW 79
C + GS + K S T C+ GH V + + ++ + S STD TL++W
Sbjct: 126 QFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV-WSSQMRDNIIISGSTDRTLKVW 184
Query: 80 DVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISK 127
+ + + T GH + + L + + + GS + V+ E +
Sbjct: 185 NAETGECIHTLYGHTSTVRCMHL--HEKRVVSGSRDATLRVWDIETGQ 230
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 52 HKKAVSYVKFLSNDELASASTDSTLRLWDVKENLPVRTF 90
H+ AV+ ++F N + S S D T++LWD+K +R
Sbjct: 361 HQSAVTCLQFNKNFVITS-SDDGTVKLWDLKTGEFIRNL 398
Score = 26.9 bits (58), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 10/73 (13%)
Query: 31 YNPGSSNYIAKYQ----------STAPCVHGHKKAVSYVKFLSNDELASASTDSTLRLWD 80
++P S YI +++ + + GH V + + S S D+TL++W
Sbjct: 86 HSPWKSAYIRQHRIDTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWS 145
Query: 81 VKENLPVRTFRGH 93
+RT GH
Sbjct: 146 AVTGKCLRTLVGH 158
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 49/119 (41%), Gaps = 17/119 (14%)
Query: 26 ICCVKYNPGSSNYIAKY------------QSTA--PCVHGHKKAVSYVKFLSNDE---LA 68
+ CV +NP + A QST G ++ V+YV + + +
Sbjct: 143 VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI 202
Query: 69 SASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISK 127
+AS D T+++WD + V T GHM+ +F I GSE + +++ K
Sbjct: 203 TASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK 261
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 49/119 (41%), Gaps = 17/119 (14%)
Query: 26 ICCVKYNPGSSNYIAKY------------QSTA--PCVHGHKKAVSYVKFLSNDE---LA 68
+ CV +NP + A QST G ++ V+YV + + +
Sbjct: 143 VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI 202
Query: 69 SASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISK 127
+AS D T+++WD + V T GHM+ +F I GSE + +++ K
Sbjct: 203 TASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK 261
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 49/119 (41%), Gaps = 17/119 (14%)
Query: 26 ICCVKYNPGSSNYIAKY------------QSTA--PCVHGHKKAVSYVKFLSNDE---LA 68
+ CV +NP + A QST G ++ V+YV + + +
Sbjct: 143 VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI 202
Query: 69 SASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISK 127
+AS D T+++WD + V T GHM+ +F I GSE + +++ K
Sbjct: 203 TASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK 261
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 49/119 (41%), Gaps = 17/119 (14%)
Query: 26 ICCVKYNPGSSNYIAKY------------QSTA--PCVHGHKKAVSYVKFLSNDE---LA 68
+ CV +NP + A QST G ++ V+YV + + +
Sbjct: 143 VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI 202
Query: 69 SASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISK 127
+AS D T+++WD + V T GHM+ +F I GSE + +++ K
Sbjct: 203 TASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK 261
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Query: 52 HKKAVSYVKFLSNDELA-------SASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTV 104
HK + F+S+ L+ S+S D TLRLWD++ + F GH +E V +
Sbjct: 69 HKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSP 128
Query: 105 NSEYIACGSESNEVYVYH 122
++ I E+ +++
Sbjct: 129 DNRQILSAGAEREIKLWN 146
Score = 34.7 bits (78), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 26/99 (26%)
Query: 26 ICCVKYNP--GSSNYIAKYQSTAPCVHGHKKAVSYVKFLSNDELASASTDSTLRLWDVKE 83
+ CV+Y+P S+N K Q AP AS D L++W+
Sbjct: 165 VSCVRYSPIMKSAN---KVQPFAPY------------------FASVGWDGRLKVWNT-- 201
Query: 84 NLPVR-TFRGHMNEKNFVGLTVNSEYIACGSESNEVYVY 121
N +R TF+ H + N + ++ N +YIA G + ++ ++
Sbjct: 202 NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIW 240
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 35.4 bits (80), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 51/108 (47%), Gaps = 6/108 (5%)
Query: 66 ELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEI 125
+ +S S D T ++W LP+ RGH +V+S +A G ++ E+ +++ +
Sbjct: 1105 KFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWN--V 1162
Query: 126 SKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIK 173
S H +P ++ G + ++ +C+ D +++A G IK
Sbjct: 1163 SNGELLH-LCAPLSEEGAATHGGW-VTDLCFSPDGKMLISAG--GYIK 1206
Score = 30.0 bits (66), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 45/103 (43%), Gaps = 5/103 (4%)
Query: 67 LASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEIS 126
LA+ S+D L+LWD+ + T GH N N + + + +A S + ++ +
Sbjct: 722 LATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSA 781
Query: 127 ---KPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTA 166
K + +F +++D ED + W +D ++ A
Sbjct: 782 NERKSINVKQF-FLNLEDPQEDM-EVIVKCCSWSADGARIMVA 822
Score = 26.6 bits (57), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 52 HKKAVSYVKFLSNDE-LASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIA 110
HKK V +++F ++++ L S+S D+ +++W+ + + + RGH L NS ++
Sbjct: 1008 HKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCI-FLRGHQETVKDFRLLKNSRLLS 1066
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 35.4 bits (80), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 25/37 (67%)
Query: 48 CVHGHKKAVSYVKFLSNDELASASTDSTLRLWDVKEN 84
C +GH +++ ++ +D++ S S D ++RLW +K+N
Sbjct: 284 CFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQN 320
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Query: 33 PGSSNYIAKYQSTAPC----VHGHKKAVSYVKF-LSNDELASASTDSTLRLWDVKENLPV 87
PG I YQ T + GH +S ++F +N L SAS D TLR+W
Sbjct: 223 PGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQ 282
Query: 88 RTFRGH 93
F GH
Sbjct: 283 NCFYGH 288
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 35.0 bits (79), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 10/83 (12%)
Query: 50 HGHKKAVSYVKFLSND--ELASASTDSTLRLWDVKENLPVRTFRGH-MNEKNF-VGLTVN 105
GH S + +SND +L + D+T+R WD++E R + H + F +G
Sbjct: 180 QGHTDGASCID-ISNDGTKLWTGGLDNTVRSWDLREG---RQLQQHDFTSQIFSLGYCPT 235
Query: 106 SEYIACGSESNEVYVYHKEISKP 128
E++A G ES+ V V H ++KP
Sbjct: 236 GEWLAVGMESSNVEVLH--VNKP 256
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/68 (22%), Positives = 31/68 (45%)
Query: 69 SASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKP 128
S +D + +WD+ VR F+GH + + + ++ + + G N V + +
Sbjct: 158 SCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQ 217
Query: 129 VTWHRFSS 136
+ H F+S
Sbjct: 218 LQQHDFTS 225
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 35.0 bits (79), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%)
Query: 69 SASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVY 121
SAS D TLRLWDV + F GH ++ V + + I GS + V+
Sbjct: 82 SASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVW 134
Score = 33.1 bits (74), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Query: 67 LASASTDSTLRLW-----DVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVY 121
L SAS D TL W D K +PVR+F+GH + LT + Y S + ++
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 92
Query: 122 HKEISKPVTWHRF 134
+++ T+ RF
Sbjct: 93 --DVATGETYQRF 103
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/79 (21%), Positives = 36/79 (45%), Gaps = 7/79 (8%)
Query: 51 GHKKAVSYVKFLSNDE-------LASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLT 103
GH VS V+ + N++ + SA D ++ W++ + F GH + N + +
Sbjct: 146 GHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTAS 205
Query: 104 VNSEYIACGSESNEVYVYH 122
+ IA + E+ +++
Sbjct: 206 PDGTLIASAGKDGEIXLWN 224
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 34.7 bits (78), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%)
Query: 69 SASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVY 121
SAS D TLRLWDV + F GH ++ V + + I GS + V+
Sbjct: 76 SASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW 128
Score = 33.1 bits (74), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Query: 67 LASASTDSTLRLW-----DVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVY 121
L SAS D TL W D K +PVR+F+GH + LT + Y S + ++
Sbjct: 27 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 86
Query: 122 HKEISKPVTWHRF 134
+++ T+ RF
Sbjct: 87 --DVATGETYQRF 97
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/86 (20%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
Query: 51 GHKKAVSYVKFLSNDE-------LASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLT 103
GH VS V+ + N++ + SA D ++ W++ + F GH + N + +
Sbjct: 140 GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTAS 199
Query: 104 VNSEYIACGSESNEVYVYHKEISKPV 129
+ IA + E+ +++ K +
Sbjct: 200 PDGTLIASAGKDGEIMLWNLAAKKAM 225
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 34.7 bits (78), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%)
Query: 69 SASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVY 121
SAS D TLRLWDV + F GH ++ V + + I GS + V+
Sbjct: 82 SASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW 134
Score = 33.1 bits (74), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Query: 67 LASASTDSTLRLW-----DVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVY 121
L SAS D TL W D K +PVR+F+GH + LT + Y S + ++
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 92
Query: 122 HKEISKPVTWHRF 134
+++ T+ RF
Sbjct: 93 --DVATGETYQRF 103
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/86 (20%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
Query: 51 GHKKAVSYVKFLSNDE-------LASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLT 103
GH VS V+ + N++ + SA D ++ W++ + F GH + N + +
Sbjct: 146 GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTAS 205
Query: 104 VNSEYIACGSESNEVYVYHKEISKPV 129
+ IA + E+ +++ K +
Sbjct: 206 PDGTLIASAGKDGEIMLWNLAAKKAM 231
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 34.7 bits (78), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%)
Query: 69 SASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVY 121
SAS D TLRLWDV + F GH ++ V + + I GS + V+
Sbjct: 82 SASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW 134
Score = 33.1 bits (74), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Query: 67 LASASTDSTLRLW-----DVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVY 121
L SAS D TL W D K +PVR+F+GH + LT + Y S + ++
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 92
Query: 122 HKEISKPVTWHRF 134
+++ T+ RF
Sbjct: 93 --DVATGETYQRF 103
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/86 (20%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
Query: 51 GHKKAVSYVKFLSNDE-------LASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLT 103
GH VS V+ + N++ + SA D ++ W++ + F GH + N + +
Sbjct: 146 GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTAS 205
Query: 104 VNSEYIACGSESNEVYVYHKEISKPV 129
+ IA + E+ +++ K +
Sbjct: 206 PDGTLIASAGKDGEIMLWNLAAKKAM 231
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 34.7 bits (78), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%)
Query: 69 SASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVY 121
SAS D TLRLWDV + F GH ++ V + + I GS + V+
Sbjct: 82 SASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW 134
Score = 33.9 bits (76), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 12/108 (11%)
Query: 34 GSSNYIAKYQSTAPCVHGHKKAVSYVKFLSNDE--LASASTDSTLRLW-----DVKENLP 86
G+SN + + T + GH V+ + + L SAS D TL W D K +P
Sbjct: 1 GASNEVLVLRGT---LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVP 57
Query: 87 VRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRF 134
VR+F+GH + LT + Y S + ++ +++ T+ RF
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW--DVATGETYQRF 103
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/86 (20%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
Query: 51 GHKKAVSYVKFLSNDE-------LASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLT 103
GH VS V+ + N++ + SA D ++ W++ + F GH + N + +
Sbjct: 146 GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTAS 205
Query: 104 VNSEYIACGSESNEVYVYHKEISKPV 129
+ IA + E+ +++ K +
Sbjct: 206 PDGTLIASAGKDGEIMLWNLAAKKAM 231
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 34.7 bits (78), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%)
Query: 69 SASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVY 121
SAS D TLRLWDV + F GH ++ V + + I GS + V+
Sbjct: 82 SASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW 134
Score = 33.5 bits (75), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 12/108 (11%)
Query: 34 GSSNYIAKYQSTAPCVHGHKKAVSYVKFLSNDE--LASASTDSTLRLW-----DVKENLP 86
G+SN + + T + GH V+ + + L SAS D TL W D K +P
Sbjct: 1 GASNEVLVLRGT---LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVP 57
Query: 87 VRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRF 134
VR+F+GH + LT + Y S + ++ +++ T+ RF
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW--DVATGETYQRF 103
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/86 (20%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
Query: 51 GHKKAVSYVKFLSNDE-------LASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLT 103
GH VS V+ + N++ + SA D ++ W++ + F GH + N + +
Sbjct: 146 GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTAS 205
Query: 104 VNSEYIACGSESNEVYVYHKEISKPV 129
+ IA + E+ +++ K +
Sbjct: 206 PDGTLIASAGKDGEIMLWNLAAKKAM 231
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 34.3 bits (77), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 52 HKKAVSYVKFLSNDELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIAC 111
H V ++ + + S S D ++L D +RT+ GH + + L N + ++C
Sbjct: 183 HNDVVRHLAVVDDGHFISCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGDIVSC 242
Query: 112 GSESNEVYVYHKE 124
G E V ++ KE
Sbjct: 243 G-EDRTVRIWSKE 254
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 51 GHKKAVSYVKFLSNDELASASTDSTLRLWDVKENLPVR 88
GH+ V +K L N ++ S D T+R+W KEN ++
Sbjct: 223 GHESFVYCIKLLPNGDIVSCGEDRTVRIWS-KENGSLK 259
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 49/107 (45%), Gaps = 13/107 (12%)
Query: 20 IDMKANICCVKYN-----PGSSNYIAKYQSTAPCVH---GHKKAV--SYVKFLSNDELAS 69
I + N+C + + GS + AK V+ H +V + V S ++ +
Sbjct: 101 IGHQGNVCSLSFQDGVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFSENKFLT 160
Query: 70 ASTDSTLRLWDVKENLPVRTFRG-HMNEKNFVGLTVNSEYIACGSES 115
AS D T++LW + + ++TF G H + + + + +I+C ++
Sbjct: 161 ASADKTIKLW--QNDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDG 205
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 33.5 bits (75), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 22/111 (19%), Positives = 48/111 (43%), Gaps = 12/111 (10%)
Query: 68 ASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISK 127
AS+S D+ +RLWD++ +++ + + + +S+Y+A G+ +V ++ E K
Sbjct: 96 ASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGK 155
Query: 128 PVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA 178
+ D FI ++ + D + + G I + +A
Sbjct: 156 K------------EYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIA 194
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 38 YIAKYQSTAPCVHGHKKAVSYVKFLSND-ELASASTDSTLRLWDVKENLPVRTFRGHMNE 96
Y ++ + A + GH V V F +D S+S+D ++++WDV V TF H ++
Sbjct: 233 YDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQ 292
Query: 97 KNFVGLTVNSEYIACGSESNEVYVY 121
V N I + E+++Y
Sbjct: 293 VWGVKYNGNGSKIVSVGDDQEIHIY 317
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 33.1 bits (74), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 26/129 (20%), Positives = 57/129 (44%), Gaps = 12/129 (9%)
Query: 51 GHKKAVSYVKFLSNDELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIA 110
GH +S +FL ++++ ++S D+T LWD++ TF GH + + L ++
Sbjct: 141 GHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFV 200
Query: 111 CGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQG 170
G+ ++ ++ + + F+ + D I+A+C+ + T +
Sbjct: 201 SGACDASAKLW--DVREGMCRQTFTGHESD----------INAICFFPNGNAFATGSDDA 248
Query: 171 TIKVLVLAA 179
T ++ L A
Sbjct: 249 TCRLFDLRA 257
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 51 GHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTF 90
GH+ ++ + F N + A+ S D+T RL+D++ + + T+
Sbjct: 224 GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY 264
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 33.1 bits (74), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 26/129 (20%), Positives = 57/129 (44%), Gaps = 12/129 (9%)
Query: 51 GHKKAVSYVKFLSNDELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIA 110
GH +S +FL ++++ ++S D+T LWD++ TF GH + + L ++
Sbjct: 141 GHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFV 200
Query: 111 CGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQG 170
G+ ++ ++ + + F+ + D I+A+C+ + T +
Sbjct: 201 SGACDASAKLW--DVREGMCRQTFTGHESD----------INAICFFPNGNAFATGSDDA 248
Query: 171 TIKVLVLAA 179
T ++ L A
Sbjct: 249 TCRLFDLRA 257
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 51 GHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTF 90
GH+ ++ + F N + A+ S D+T RL+D++ + + T+
Sbjct: 224 GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY 264
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 33.1 bits (74), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 51 GHKKAVSYVKFLSNDE--LASASTDSTLRLWDVKENLPVRTF---RGHMNE 96
GH A++ +KF D L S S D LRLW+++ + V F GH +E
Sbjct: 149 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDE 199
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 33.1 bits (74), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 26/129 (20%), Positives = 57/129 (44%), Gaps = 12/129 (9%)
Query: 51 GHKKAVSYVKFLSNDELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIA 110
GH +S +FL ++++ ++S D+T LWD++ TF GH + + L ++
Sbjct: 152 GHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFV 211
Query: 111 CGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQG 170
G+ ++ ++ + + F+ + D I+A+C+ + T +
Sbjct: 212 SGACDASAKLW--DVREGMCRQTFTGHESD----------INAICFFPNGNAFATGSDDA 259
Query: 171 TIKVLVLAA 179
T ++ L A
Sbjct: 260 TCRLFDLRA 268
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 51 GHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTF 90
GH+ ++ + F N + A+ S D+T RL+D++ + + T+
Sbjct: 235 GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY 275
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 33.1 bits (74), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 26/129 (20%), Positives = 57/129 (44%), Gaps = 12/129 (9%)
Query: 51 GHKKAVSYVKFLSNDELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIA 110
GH +S +FL ++++ ++S D+T LWD++ TF GH + + L ++
Sbjct: 141 GHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFV 200
Query: 111 CGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQG 170
G+ ++ ++ + + F+ + D I+A+C+ + T +
Sbjct: 201 SGACDASAKLW--DVREGMCRQTFTGHESD----------INAICFFPNGNAFATGSDDA 248
Query: 171 TIKVLVLAA 179
T ++ L A
Sbjct: 249 TCRLFDLRA 257
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 51 GHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTF 90
GH+ ++ + F N + A+ S D+T RL+D++ + + T+
Sbjct: 224 GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY 264
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 33.1 bits (74), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 26/129 (20%), Positives = 57/129 (44%), Gaps = 12/129 (9%)
Query: 51 GHKKAVSYVKFLSNDELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIA 110
GH +S +FL ++++ ++S D+T LWD++ TF GH + + L ++
Sbjct: 141 GHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFV 200
Query: 111 CGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQG 170
G+ ++ ++ + + F+ + D I+A+C+ + T +
Sbjct: 201 SGACDASAKLW--DVREGMCRQTFTGHESD----------INAICFFPNGNAFATGSDDA 248
Query: 171 TIKVLVLAA 179
T ++ L A
Sbjct: 249 TCRLFDLRA 257
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 51 GHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTF 90
GH+ ++ + F N + A+ S D+T RL+D++ + + T+
Sbjct: 224 GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY 264
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 33.1 bits (74), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 51 GHKKAVSYVKFLSNDE--LASASTDSTLRLWDVKENLPVRTF---RGHMNE 96
GH A++ +KF D L S S D LRLW+++ + V F GH +E
Sbjct: 113 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDE 163
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 33.1 bits (74), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 51 GHKKAVSYVKFLSNDE--LASASTDSTLRLWDVKENLPVRTF---RGHMNE 96
GH A++ +KF D L S S D LRLW+++ + V F GH +E
Sbjct: 112 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDE 162
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 33.1 bits (74), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 51 GHKKAVSYVKFLSNDE--LASASTDSTLRLWDVKENLPVRTF---RGHMNE 96
GH A++ +KF D L S S D LRLW+++ + V F GH +E
Sbjct: 112 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDE 162
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 33.1 bits (74), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 51 GHKKAVSYVKFLSNDE--LASASTDSTLRLWDVKENLPVRTF---RGHMNE 96
GH A++ +KF D L S S D LRLW+++ + V F GH +E
Sbjct: 108 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDE 158
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 37 NYIAKYQSTAPCVHGHKKAVSYVKFLSND-ELASASTDSTLRLWDVKENLPVRTFRGH 93
N AK +S A H +S F ++D ++ +AS D T LWDV+ +++F GH
Sbjct: 142 NMAAKKKSVAM----HTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGH 195
Score = 27.3 bits (59), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/83 (21%), Positives = 32/83 (38%), Gaps = 3/83 (3%)
Query: 50 HGHKKAVSYVKFL---SNDELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNS 106
HGH V + + + S D +WD++ V+ F H ++ N V +
Sbjct: 193 HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSG 252
Query: 107 EYIACGSESNEVYVYHKEISKPV 129
+ A GS+ +Y + V
Sbjct: 253 DAFASGSDDATCRLYDLRADREV 275
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 50 HGHKKAVSYVKFL-SNDELASASTDSTLRLWDVKENLPVRTFRGH 93
H ++ +KF S + L S+S D L++W VK+ RT GH
Sbjct: 133 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGH 177
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 51 GHKKAVSYVKFLSNDE-LASASTDSTLRLWDVKENLPVRTF 90
GH+ V+ + + + SAS D T+RLW+ + TF
Sbjct: 176 GHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTF 216
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 32.0 bits (71), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 50 HGHKKAVSYVKFL-SNDELASASTDSTLRLWDVKENLPVRTFRGH 93
H ++ +KF S + L S+S D L++W VK+ RT GH
Sbjct: 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGH 180
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 51 GHKKAVSYVKFLSNDE-LASASTDSTLRLWDVKENLPVRTF 90
GH+ V+ + + + SAS D T+RLW+ + TF
Sbjct: 179 GHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTF 219
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 30.4 bits (67), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 46/114 (40%), Gaps = 33/114 (28%)
Query: 5 KVKVWCTRQ----EASVLNIDMKANICCVKYNPGSSNYIAKYQSTAPCVHGHKKAVSYVK 60
K+ +W TR + S L A + C+ +NP Y +
Sbjct: 253 KLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNP------------------------YSE 288
Query: 61 FLSNDELASASTDSTLRLWDVKE-NLPVRTFRGHMNEKNFVGLTVNSEYIACGS 113
F+ LA+ S D T+ LWD++ L + TF H +E V + ++E I S
Sbjct: 289 FI----LATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASS 338
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 30.4 bits (67), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 46/114 (40%), Gaps = 33/114 (28%)
Query: 5 KVKVWCTRQ----EASVLNIDMKANICCVKYNPGSSNYIAKYQSTAPCVHGHKKAVSYVK 60
K+ +W TR + S L A + C+ +NP Y +
Sbjct: 253 KLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNP------------------------YSE 288
Query: 61 FLSNDELASASTDSTLRLWDVKE-NLPVRTFRGHMNEKNFVGLTVNSEYIACGS 113
F+ LA+ S D T+ LWD++ L + TF H +E V + ++E I S
Sbjct: 289 FI----LATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASS 338
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 30.4 bits (67), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 15/98 (15%)
Query: 6 VKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIA------------KYQSTAPC--VHG 51
+++W A + +D + +C + ++P I+ KY + A + G
Sbjct: 303 IRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKG 362
Query: 52 H-KKAVSYVKFLSNDELASASTDSTLRLWDVKENLPVR 88
H + +S +ASA+ D TLRLW E P R
Sbjct: 363 HTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPAR 400
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 55 AVSYVKFLSNDELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSE 114
+V+++K + LA ++ + ++LWDV++ +R H L+ NS ++ GS
Sbjct: 152 SVAWIK--EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSH--SARVGSLSWNSYILSSGSR 207
Query: 115 SNEVYVYHKEI 125
S +++H ++
Sbjct: 208 SG--HIHHHDV 216
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 30.4 bits (67), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 15/98 (15%)
Query: 6 VKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIA------------KYQSTAPC--VHG 51
+++W A + +D + +C + ++P I+ KY + A + G
Sbjct: 314 IRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKG 373
Query: 52 H-KKAVSYVKFLSNDELASASTDSTLRLWDVKENLPVR 88
H + +S +ASA+ D TLRLW E P R
Sbjct: 374 HTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPAR 411
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 55 AVSYVKFLSNDELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSE 114
+V+++K + LA ++ + ++LWDV++ +R H L+ NS ++ GS
Sbjct: 163 SVAWIK--EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSH--SARVGSLSWNSYILSSGSR 218
Query: 115 SNEVYVYHKEI 125
S +++H ++
Sbjct: 219 SG--HIHHHDV 227
>pdb|2HUJ|A Chain A, Crystal Structure Of A Protein Of Uknown Function
(np_471338.1) From Listeria Innocua At 1.74 A Resolution
Length = 140
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 102 LTVNSEYIACGSESN-EVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCW-KSD 159
L + +E + +E N E+Y+ ++E KP +++ P +D+ A + A+ W ++
Sbjct: 22 LLIRTEQLLLQNEKNWELYLSNREEEKPFDFYKDXKPFVDEAKRCADDFLELAIPWVNTE 81
Query: 160 SPTML 164
P L
Sbjct: 82 RPPYL 86
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 58 YVKFLSNDELASASTDSTLRLWDVKE-NLPVRTFRGHMNEKNFVGLTVNSEYIACGS 113
Y +F+ LA+ S D T+ LWD++ L + +F H +E V + ++E I S
Sbjct: 284 YSEFI----LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASS 336
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 15/96 (15%)
Query: 6 VKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIA------------KYQSTAPC--VHG 51
+++W A + +D + +C + ++P I+ KY + A + G
Sbjct: 223 IRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKG 282
Query: 52 H-KKAVSYVKFLSNDELASASTDSTLRLWDVKENLP 86
H + +S +ASA+ D TLRLW E P
Sbjct: 283 HTSRVLSLTMSPDGATVASAAADETLRLWRCFELDP 318
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 55 AVSYVKFLSNDELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSE 114
+V+++K + LA ++ + ++LWDV++ +R H L+ NS ++ GS
Sbjct: 72 SVAWIK--EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSH--SARVGSLSWNSYILSSGSR 127
Query: 115 SNEVYVYHKEI 125
S +++H ++
Sbjct: 128 SG--HIHHHDV 136
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 58 YVKFLSNDELASASTDSTLRLWDVKE-NLPVRTFRGHMNEKNFVGLTVNSEYIACGS 113
Y +F+ LA+ S D T+ LWD++ L + +F H +E V + ++E I S
Sbjct: 290 YSEFI----LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASS 342
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 58 YVKFLSNDELASASTDSTLRLWDVKE-NLPVRTFRGHMNEKNFVGLTVNSEYIACGS 113
Y +F+ LA+ S D T+ LWD++ L + +F H +E V + ++E I S
Sbjct: 288 YSEFI----LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASS 340
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 58 YVKFLSNDELASASTDSTLRLWDVKE-NLPVRTFRGHMNEKNFVGLTVNSEYIACGS 113
Y +F+ LA+ S D T+ LWD++ L + +F H +E V + ++E I S
Sbjct: 292 YSEFI----LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASS 344
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 52 HKKAVSYVKF--LSNDELASASTDSTLRLWDVKENLPVRTF---RGHMNEKNFVGLTVNS 106
HKK V++V + LA+AS D T+++WD+++ +F H + N + +
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 308
Query: 107 EYIACGSESNEVYVY 121
+ + +E+ VY
Sbjct: 309 ARLLTTDQKSEIRVY 323
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 52 HKKAVSYVKF--LSNDELASASTDSTLRLWDVKENLPVRTF---RGHMNEKNFVGLTVNS 106
HKK V++V + LA+AS D T+++WD+++ +F H + N + +
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 308
Query: 107 EYIACGSESNEVYVY 121
+ + +E+ VY
Sbjct: 309 ARLLTTDQKSEIRVY 323
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 52 HKKAVSYVKF--LSNDELASASTDSTLRLWDVKENLPVRTF---RGHMNEKNFVGLTVNS 106
HKK V++V + LA+AS D T+++WD+++ +F H + N + +
Sbjct: 250 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 309
Query: 107 EYIACGSESNEVYVY 121
+ + +E+ VY
Sbjct: 310 ARLLTTDQKSEIRVY 324
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 41 KYQSTAPCVHGHKKAVSYVKFLSNDE--LASASTDSTLRLWDVKE 83
K S + + GH++ + V + + LA+AS DS ++LWDV+
Sbjct: 174 KSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRR 218
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 27.3 bits (59), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 17 VLNIDMKANICCVKYNPGSSNYIAKYQSTAPCVHGHKKAVSYVKFLSNDELASASTDSTL 76
V+ + I C ++ S ++ + V G A+S+ L + + A+ D+T+
Sbjct: 222 VITVGSDRKISC--FDGKSGEFLKYIEDDQEPVQGGIFALSW---LDSQKFATVGADATI 276
Query: 77 RLWDV 81
R+WDV
Sbjct: 277 RVWDV 281
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 17 VLNIDMKANICCVKYNPGSSNYIAKYQSTAPCVHGHKKAVSYVKFLSNDELASASTDSTL 76
V+ + I C ++ S ++ + V G A+S+ L + + A+ D+T+
Sbjct: 222 VITVGSDRKISC--FDGKSGEFLKYIEDDQEPVQGGIFALSW---LDSQKFATVGADATI 276
Query: 77 RLWDV 81
R+WDV
Sbjct: 277 RVWDV 281
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 48 CVHGHKKAVSYVKFLSND-ELASASTDSTLRLWDVKENLPVRTFRGH 93
+ GH V + + S+ +LAS D+ +++WD + ++P T H
Sbjct: 212 TLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNH 258
>pdb|3O3R|A Chain A, Crystal Structure Of Akr1b14 In Complex With Nadp
pdb|3O3R|B Chain B, Crystal Structure Of Akr1b14 In Complex With Nadp
Length = 316
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 52 HKKAVSYVKFLSNDELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVG-LTVNSEYIA 110
HKK ++ V + + A ++ L +KEN+ V F+ ++E++ L++N + A
Sbjct: 241 HKKTIAQVLIRFHVQRNVAVIPKSVTLSHIKENIQVFDFQ--LSEEDMAAILSLNRNWRA 298
Query: 111 CG---SESNEVYVYHKE 124
CG + E + +H+E
Sbjct: 299 CGLFVTSDEEDFPFHEE 315
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 63 SNDELASASTDSTLRLWDVKENLPVRTFRGHMNE 96
S + L SA D LR WDVK + T H ++
Sbjct: 302 SGETLCSAGWDGKLRFWDVKTKERITTLNMHCDD 335
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 27.3 bits (59), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 63 SNDELASASTDSTLRLWDVKENLPVRTFRGHMNE 96
S + L SA D LR WDVK + T H ++
Sbjct: 312 SGETLCSAGWDGKLRFWDVKTKERITTLNMHCDD 345
>pdb|3E2V|A Chain A, Crystal Structure Of An Uncharacterized Amidohydrolase
From Saccharomyces Cerevisiae
pdb|3E2V|B Chain B, Crystal Structure Of An Uncharacterized Amidohydrolase
From Saccharomyces Cerevisiae
Length = 401
Score = 26.9 bits (58), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 67 LASASTDSTLRLWDVKENLPVRTFRGHMNEKNF 99
L S +TDS L+ +D+ NL F G N K +
Sbjct: 3 LTSTATDSPLKYYDIGLNLTDPMFHGIYNGKQY 35
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 26.9 bits (58), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
Query: 52 HKKAVSYVKFLSNDE--LASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLT----VN 105
HK V++ +F + +A++S D+T++LWD++ ++ M + V +
Sbjct: 202 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTD 261
Query: 106 SEYIACGSESNEVYVYHK-EISKP 128
S + + NE+ VY + SKP
Sbjct: 262 STKLLTTDQRNEIRVYSSYDWSKP 285
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 26.6 bits (57), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
Query: 52 HKKAVSYVKFLSNDE--LASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLT----VN 105
HK V++ +F + +A++S D+T++LWD++ ++ M + V +
Sbjct: 203 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTD 262
Query: 106 SEYIACGSESNEVYVYHK-EISKP 128
S + + NE+ VY + SKP
Sbjct: 263 STKLLTTDQRNEIRVYSSYDWSKP 286
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.128 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,374,212
Number of Sequences: 62578
Number of extensions: 210703
Number of successful extensions: 775
Number of sequences better than 100.0: 86
Number of HSP's better than 100.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 441
Number of HSP's gapped (non-prelim): 289
length of query: 179
length of database: 14,973,337
effective HSP length: 93
effective length of query: 86
effective length of database: 9,153,583
effective search space: 787208138
effective search space used: 787208138
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)