Query 038439
Match_columns 179
No_of_seqs 326 out of 1148
Neff 11.8
Searched_HMMs 46136
Date Fri Mar 29 11:05:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038439.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038439hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0263 Transcription initiati 100.0 7.9E-36 1.7E-40 214.1 17.8 165 1-178 470-649 (707)
2 KOG0272 U4/U6 small nuclear ri 100.0 1.5E-35 3.2E-40 200.1 12.3 166 1-178 238-418 (459)
3 KOG0272 U4/U6 small nuclear ri 100.0 4.1E-35 9E-40 197.9 12.5 166 1-178 194-375 (459)
4 KOG0286 G-protein beta subunit 100.0 5.6E-33 1.2E-37 180.2 18.2 166 1-179 74-260 (343)
5 KOG0279 G protein beta subunit 100.0 1.3E-32 2.9E-37 177.4 18.4 165 1-179 82-263 (315)
6 KOG0271 Notchless-like WD40 re 100.0 6.8E-33 1.5E-37 185.8 16.4 177 1-179 134-398 (480)
7 KOG0271 Notchless-like WD40 re 100.0 1E-31 2.2E-36 180.1 16.4 162 1-176 224-479 (480)
8 KOG0315 G-protein beta subunit 100.0 1.9E-30 4E-35 165.4 17.9 177 1-178 17-245 (311)
9 KOG0273 Beta-transducin family 100.0 5.9E-30 1.3E-34 175.3 15.9 166 1-179 254-483 (524)
10 KOG0263 Transcription initiati 100.0 3.9E-30 8.5E-35 185.1 14.7 147 21-179 449-608 (707)
11 KOG0266 WD40 repeat-containing 100.0 8E-29 1.7E-33 178.7 20.3 168 1-178 178-364 (456)
12 KOG0645 WD40 repeat protein [G 100.0 1.4E-28 3.1E-33 158.4 19.1 166 1-177 34-224 (312)
13 KOG0276 Vesicle coat complex C 100.0 2.2E-29 4.8E-34 178.0 16.8 166 1-178 74-257 (794)
14 KOG0279 G protein beta subunit 100.0 1.5E-28 3.3E-33 158.7 18.2 166 1-179 35-223 (315)
15 KOG0286 G-protein beta subunit 100.0 1.7E-28 3.7E-33 159.5 18.0 165 2-177 117-302 (343)
16 KOG0295 WD40 repeat-containing 100.0 1.8E-28 4E-33 163.4 17.9 165 1-178 212-406 (406)
17 KOG0315 G-protein beta subunit 100.0 2.2E-28 4.8E-33 156.0 17.0 168 1-179 102-289 (311)
18 KOG0284 Polyadenylation factor 100.0 2.9E-29 6.4E-34 169.3 12.1 164 2-178 116-294 (464)
19 KOG0643 Translation initiation 100.0 2.7E-28 5.9E-33 157.0 15.7 176 1-177 71-316 (327)
20 KOG0285 Pleiotropic regulator 100.0 2.7E-28 5.8E-33 162.7 14.7 165 1-178 170-348 (460)
21 KOG0318 WD40 repeat stress pro 100.0 1.3E-27 2.9E-32 165.9 18.0 168 3-179 80-266 (603)
22 KOG0273 Beta-transducin family 100.0 3.1E-27 6.7E-32 162.1 18.1 165 1-178 336-523 (524)
23 KOG0319 WD40-repeat-containing 100.0 9.6E-28 2.1E-32 172.1 16.3 163 1-176 431-617 (775)
24 KOG0291 WD40-repeat-containing 100.0 4.1E-27 9E-32 169.5 19.5 174 3-177 286-507 (893)
25 KOG0291 WD40-repeat-containing 100.0 3.7E-27 8.1E-32 169.8 18.8 178 1-179 369-613 (893)
26 KOG0266 WD40 repeat-containing 100.0 1.1E-26 2.3E-31 167.8 20.7 169 1-179 222-410 (456)
27 KOG0295 WD40 repeat-containing 100.0 9.2E-28 2E-32 160.1 13.9 179 1-179 127-365 (406)
28 KOG0284 Polyadenylation factor 100.0 4.6E-28 1E-32 163.6 11.8 164 1-176 199-378 (464)
29 PTZ00421 coronin; Provisional 100.0 6.1E-26 1.3E-30 164.0 22.4 168 1-179 95-291 (493)
30 KOG0282 mRNA splicing factor [ 100.0 2.8E-27 6.1E-32 162.6 13.9 164 1-176 277-503 (503)
31 KOG0281 Beta-TrCP (transducin 100.0 4.3E-28 9.4E-33 161.5 9.5 160 1-179 254-429 (499)
32 PTZ00420 coronin; Provisional 100.0 1E-25 2.2E-30 164.1 22.2 169 2-178 52-248 (568)
33 KOG0278 Serine/threonine kinas 100.0 3.8E-27 8.3E-32 150.6 12.9 175 2-178 79-297 (334)
34 KOG0772 Uncharacterized conser 100.0 1.7E-27 3.6E-32 165.3 11.9 171 1-179 186-395 (641)
35 KOG0316 Conserved WD40 repeat- 100.0 1.8E-26 3.8E-31 146.4 15.1 162 1-178 36-213 (307)
36 KOG0302 Ribosome Assembly prot 99.9 1.1E-26 2.3E-31 155.8 14.4 166 1-178 172-378 (440)
37 KOG0282 mRNA splicing factor [ 99.9 4E-27 8.6E-32 161.9 12.6 179 1-179 234-463 (503)
38 KOG0283 WD40 repeat-containing 99.9 8.8E-27 1.9E-31 168.9 14.2 116 49-178 365-481 (712)
39 PTZ00421 coronin; Provisional 99.9 6.1E-25 1.3E-29 158.8 22.6 147 21-178 73-245 (493)
40 KOG0319 WD40-repeat-containing 99.9 3.4E-26 7.3E-31 164.2 15.7 167 1-179 384-578 (775)
41 PLN00181 protein SPA1-RELATED; 99.9 6.8E-25 1.5E-29 168.2 23.3 177 1-177 595-792 (793)
42 KOG0277 Peroxisomal targeting 99.9 3.5E-25 7.7E-30 141.8 16.3 165 3-179 37-222 (311)
43 KOG1407 WD40 repeat protein [F 99.9 4E-25 8.7E-30 142.0 16.5 165 1-178 84-311 (313)
44 KOG0277 Peroxisomal targeting 99.9 1.1E-25 2.4E-30 144.1 12.9 165 1-176 124-307 (311)
45 KOG0292 Vesicle coat complex C 99.9 9.1E-26 2E-30 165.4 13.7 175 3-178 30-236 (1202)
46 cd00200 WD40 WD40 domain, foun 99.9 4.2E-24 9E-29 145.2 21.2 165 1-178 70-249 (289)
47 KOG0313 Microtubule binding pr 99.9 2.2E-25 4.8E-30 149.5 14.4 168 1-179 166-377 (423)
48 KOG0276 Vesicle coat complex C 99.9 2.4E-25 5.1E-30 157.9 15.2 162 1-174 116-295 (794)
49 cd00200 WD40 WD40 domain, foun 99.9 5E-24 1.1E-28 144.8 21.1 165 2-178 29-207 (289)
50 PTZ00420 coronin; Provisional 99.9 6.3E-24 1.4E-28 154.8 22.6 168 1-178 94-293 (568)
51 KOG0318 WD40 repeat stress pro 99.9 2.4E-24 5.2E-29 149.9 18.8 171 5-178 130-350 (603)
52 KOG0645 WD40 repeat protein [G 99.9 2.9E-24 6.3E-29 138.6 17.5 178 1-178 80-311 (312)
53 KOG0306 WD40-repeat-containing 99.9 7.5E-25 1.6E-29 158.0 15.5 164 1-177 473-663 (888)
54 PLN00181 protein SPA1-RELATED; 99.9 1.2E-23 2.6E-28 161.4 23.2 164 1-178 552-738 (793)
55 KOG0265 U5 snRNP-specific prot 99.9 1.1E-24 2.4E-29 142.3 14.5 145 21-178 45-204 (338)
56 KOG0300 WD40 repeat-containing 99.9 6.4E-25 1.4E-29 145.1 13.4 165 1-179 167-387 (481)
57 KOG0316 Conserved WD40 repeat- 99.9 4.9E-24 1.1E-28 135.4 16.0 164 1-178 78-257 (307)
58 KOG0264 Nucleosome remodeling 99.9 2.2E-24 4.9E-29 147.2 15.3 178 1-178 197-404 (422)
59 KOG0305 Anaphase promoting com 99.9 2.7E-24 5.8E-29 152.0 15.3 172 2-177 237-460 (484)
60 KOG0289 mRNA splicing factor [ 99.9 8.2E-24 1.8E-28 144.3 17.0 165 1-176 280-460 (506)
61 KOG0296 Angio-associated migra 99.9 2.4E-23 5.3E-28 139.2 18.8 132 1-133 83-229 (399)
62 KOG0275 Conserved WD40 repeat- 99.9 3.8E-25 8.2E-30 146.7 9.9 167 1-178 232-423 (508)
63 KOG0289 mRNA splicing factor [ 99.9 9.6E-24 2.1E-28 144.0 16.3 166 1-178 238-419 (506)
64 KOG0264 Nucleosome remodeling 99.9 6.3E-24 1.4E-28 145.1 15.5 166 2-178 145-347 (422)
65 KOG0269 WD40 repeat-containing 99.9 1.1E-24 2.3E-29 157.4 12.2 167 1-178 107-296 (839)
66 KOG0265 U5 snRNP-specific prot 99.9 1.2E-23 2.5E-28 137.5 15.2 166 1-179 66-247 (338)
67 KOG0292 Vesicle coat complex C 99.9 7.6E-24 1.7E-28 155.5 15.6 168 1-178 70-280 (1202)
68 KOG0640 mRNA cleavage stimulat 99.9 4.8E-24 1E-28 140.4 13.2 177 1-178 191-426 (430)
69 KOG0640 mRNA cleavage stimulat 99.9 6.4E-24 1.4E-28 139.9 13.6 146 21-176 110-289 (430)
70 KOG0285 Pleiotropic regulator 99.9 6.3E-24 1.4E-28 142.0 13.7 145 22-179 150-308 (460)
71 KOG1036 Mitotic spindle checkp 99.9 2.8E-23 6E-28 136.1 16.4 175 1-179 32-263 (323)
72 KOG1446 Histone H3 (Lys4) meth 99.9 1.6E-22 3.4E-27 133.0 19.4 166 1-177 33-216 (311)
73 KOG0646 WD40 repeat protein [G 99.9 2.6E-23 5.6E-28 142.7 16.4 176 2-178 101-307 (476)
74 KOG0310 Conserved WD40 repeat- 99.9 2.2E-23 4.7E-28 143.7 15.7 164 2-178 88-268 (487)
75 KOG0275 Conserved WD40 repeat- 99.9 1.2E-24 2.5E-29 144.4 8.6 146 21-179 211-379 (508)
76 KOG0281 Beta-TrCP (transducin 99.9 4E-24 8.6E-29 142.8 10.7 158 1-178 214-388 (499)
77 KOG0643 Translation initiation 99.9 4.9E-23 1.1E-27 132.9 15.2 152 17-179 4-221 (327)
78 KOG0313 Microtubule binding pr 99.9 7.8E-23 1.7E-27 137.4 16.4 164 1-179 122-331 (423)
79 KOG0293 WD40 repeat-containing 99.9 7.4E-24 1.6E-28 143.9 11.5 165 2-178 289-513 (519)
80 KOG0647 mRNA export protein (c 99.9 2.1E-22 4.6E-27 131.9 17.1 176 1-177 47-280 (347)
81 KOG0310 Conserved WD40 repeat- 99.9 2.6E-23 5.5E-28 143.4 13.5 159 5-178 49-225 (487)
82 KOG0296 Angio-associated migra 99.9 2.1E-22 4.6E-27 134.7 16.7 150 17-179 57-221 (399)
83 KOG0268 Sof1-like rRNA process 99.9 4.7E-23 1E-27 137.9 13.2 164 1-177 86-344 (433)
84 KOG0274 Cdc4 and related F-box 99.9 1E-22 2.2E-27 147.9 16.1 160 1-179 268-442 (537)
85 KOG0283 WD40 repeat-containing 99.9 3E-22 6.5E-27 145.7 17.5 168 1-178 387-576 (712)
86 KOG1407 WD40 repeat protein [F 99.9 2.1E-22 4.6E-27 129.6 13.8 166 1-178 39-261 (313)
87 KOG0274 Cdc4 and related F-box 99.9 1.1E-21 2.4E-26 142.6 19.3 162 1-179 225-401 (537)
88 KOG1274 WD40 repeat protein [G 99.9 6E-22 1.3E-26 145.6 17.3 168 1-178 73-262 (933)
89 KOG0641 WD40 repeat protein [G 99.9 1.6E-21 3.5E-26 123.7 16.4 117 49-178 179-303 (350)
90 KOG0278 Serine/threonine kinas 99.9 3E-22 6.5E-27 128.4 12.9 128 1-129 162-302 (334)
91 KOG0305 Anaphase promoting com 99.9 5.9E-22 1.3E-26 140.2 15.4 163 3-179 196-377 (484)
92 KOG0269 WD40 repeat-containing 99.9 7.2E-23 1.6E-27 148.1 9.7 143 25-178 89-250 (839)
93 KOG0306 WD40-repeat-containing 99.9 3.8E-21 8.2E-26 139.2 17.6 164 2-178 392-580 (888)
94 KOG0308 Conserved WD40 repeat- 99.9 2E-22 4.4E-27 143.5 10.9 166 1-178 44-243 (735)
95 KOG0772 Uncharacterized conser 99.9 3.4E-22 7.4E-27 139.2 11.8 163 1-176 288-485 (641)
96 KOG0639 Transducin-like enhanc 99.9 3.8E-22 8.2E-27 138.9 11.2 162 2-176 438-620 (705)
97 KOG0308 Conserved WD40 repeat- 99.9 2E-21 4.3E-26 138.6 14.9 166 1-179 92-286 (735)
98 KOG0267 Microtubule severing p 99.9 6E-23 1.3E-27 147.7 7.2 166 1-179 47-227 (825)
99 KOG0301 Phospholipase A2-activ 99.9 4.3E-21 9.4E-26 137.6 16.0 159 1-178 119-288 (745)
100 KOG0288 WD40 repeat protein Ti 99.9 2.5E-21 5.4E-26 131.5 13.2 163 1-175 238-458 (459)
101 KOG0288 WD40 repeat protein Ti 99.9 4.2E-22 9.1E-27 135.2 8.8 170 1-179 194-418 (459)
102 KOG0973 Histone transcription 99.9 2.9E-21 6.2E-26 144.0 13.4 160 2-168 35-239 (942)
103 KOG0270 WD40 repeat-containing 99.9 3.8E-20 8.2E-25 126.7 17.4 168 1-178 263-449 (463)
104 KOG0267 Microtubule severing p 99.9 2.9E-22 6.2E-27 144.3 7.5 157 1-170 89-260 (825)
105 KOG0293 WD40 repeat-containing 99.9 1E-20 2.3E-25 128.8 14.1 145 21-178 222-384 (519)
106 KOG0294 WD40 repeat-containing 99.9 4.4E-20 9.6E-25 121.8 16.5 176 1-178 60-281 (362)
107 KOG1332 Vesicle coat complex C 99.9 5.3E-21 1.1E-25 122.2 11.7 167 1-176 77-284 (299)
108 KOG1332 Vesicle coat complex C 99.9 1.4E-20 3.1E-25 120.3 13.2 166 1-177 30-240 (299)
109 KOG2096 WD40 repeat protein [G 99.9 4.8E-20 1E-24 122.1 15.6 167 1-178 105-308 (420)
110 KOG1539 WD repeat protein [Gen 99.9 1.6E-19 3.5E-24 132.0 19.5 125 54-179 449-607 (910)
111 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2.7E-19 5.8E-24 123.3 19.9 165 2-179 93-280 (300)
112 KOG0299 U3 snoRNP-associated p 99.9 6.3E-20 1.4E-24 126.2 16.0 177 1-179 221-411 (479)
113 KOG0647 mRNA export protein (c 99.9 5.3E-20 1.2E-24 120.8 14.4 142 22-179 26-185 (347)
114 KOG4283 Transcription-coupled 99.9 4.8E-20 1E-24 121.0 14.2 178 1-178 63-276 (397)
115 KOG1539 WD repeat protein [Gen 99.9 3E-20 6.5E-25 135.7 14.5 162 2-176 468-646 (910)
116 KOG0301 Phospholipase A2-activ 99.9 2.9E-20 6.3E-25 133.4 14.0 160 1-177 78-248 (745)
117 KOG4328 WD40 protein [Function 99.9 3.1E-20 6.7E-25 127.7 13.4 146 22-177 185-398 (498)
118 KOG2110 Uncharacterized conser 99.9 8.5E-19 1.8E-23 117.9 19.5 163 4-178 68-248 (391)
119 KOG0973 Histone transcription 99.8 3.1E-20 6.8E-25 138.6 13.8 145 22-178 12-201 (942)
120 KOG2919 Guanine nucleotide-bin 99.8 8E-20 1.7E-24 121.2 13.9 169 1-178 130-327 (406)
121 KOG0641 WD40 repeat protein [G 99.8 7.4E-19 1.6E-23 111.8 17.6 123 50-178 86-261 (350)
122 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 8.7E-19 1.9E-23 120.7 19.7 164 1-179 8-188 (300)
123 KOG4378 Nuclear protein COP1 [ 99.8 5.4E-20 1.2E-24 128.1 13.3 165 1-178 98-280 (673)
124 KOG1446 Histone H3 (Lys4) meth 99.8 4.7E-19 1E-23 116.8 16.8 152 14-179 4-171 (311)
125 KOG0303 Actin-binding protein 99.8 4E-20 8.7E-25 125.3 11.3 145 22-178 80-249 (472)
126 KOG2096 WD40 repeat protein [G 99.8 7.3E-19 1.6E-23 116.6 15.2 161 1-175 206-399 (420)
127 KOG0646 WD40 repeat protein [G 99.8 3.3E-19 7.2E-24 122.8 14.1 161 5-178 62-247 (476)
128 KOG0303 Actin-binding protein 99.8 1.2E-19 2.5E-24 123.1 10.8 118 49-179 77-204 (472)
129 KOG1408 WD40 repeat protein [F 99.8 1E-18 2.3E-23 126.6 16.3 166 1-178 523-713 (1080)
130 KOG2111 Uncharacterized conser 99.8 5.6E-18 1.2E-22 112.0 18.3 161 4-178 75-256 (346)
131 PF08662 eIF2A: Eukaryotic tra 99.8 3.5E-18 7.6E-23 110.4 17.1 109 53-178 59-179 (194)
132 KOG4283 Transcription-coupled 99.8 2.9E-19 6.2E-24 117.4 11.6 128 1-128 121-280 (397)
133 KOG0302 Ribosome Assembly prot 99.8 7.3E-19 1.6E-23 118.6 13.1 171 4-175 234-435 (440)
134 KOG0294 WD40 repeat-containing 99.8 1.5E-18 3.2E-23 114.7 14.2 110 22-134 42-167 (362)
135 KOG2106 Uncharacterized conser 99.8 8.5E-18 1.8E-22 117.4 17.9 159 2-178 265-477 (626)
136 KOG0299 U3 snoRNP-associated p 99.8 1.3E-18 2.8E-23 119.8 13.4 163 1-178 161-356 (479)
137 KOG1034 Transcriptional repres 99.8 3.7E-18 7.9E-23 113.5 13.9 169 2-178 113-383 (385)
138 KOG1036 Mitotic spindle checkp 99.8 1.2E-17 2.7E-22 109.9 15.8 142 22-179 12-164 (323)
139 KOG1408 WD40 repeat protein [F 99.8 3.8E-18 8.3E-23 123.8 14.7 145 24-178 460-671 (1080)
140 KOG0321 WD40 repeat-containing 99.8 7.9E-18 1.7E-22 120.2 15.9 176 2-179 72-302 (720)
141 KOG0650 WD40 repeat nucleolar 99.8 1.5E-17 3.3E-22 118.2 17.1 165 1-178 419-637 (733)
142 KOG2048 WD40 repeat protein [G 99.8 4.2E-17 9E-22 117.1 19.4 171 2-178 45-233 (691)
143 KOG1007 WD repeat protein TSSC 99.8 7.2E-18 1.6E-22 110.5 14.1 175 2-177 142-360 (370)
144 KOG1445 Tumor-specific antigen 99.8 1.6E-18 3.4E-23 124.3 11.9 166 2-177 601-797 (1012)
145 KOG1273 WD40 repeat protein [G 99.8 9.5E-18 2.1E-22 111.1 14.6 147 18-178 19-226 (405)
146 KOG1063 RNA polymerase II elon 99.8 8.9E-18 1.9E-22 120.9 15.1 122 49-178 521-648 (764)
147 KOG2055 WD40 repeat protein [G 99.8 4.6E-18 1E-22 117.3 13.0 169 1-178 322-512 (514)
148 KOG2394 WD40 protein DMR-N9 [G 99.8 1.8E-18 3.9E-23 121.5 11.0 124 22-157 218-383 (636)
149 KOG1188 WD40 repeat protein [G 99.8 2.8E-18 6E-23 114.4 11.1 175 1-176 91-344 (376)
150 KOG2445 Nuclear pore complex c 99.8 4E-17 8.6E-22 107.8 16.4 175 1-177 32-317 (361)
151 KOG2055 WD40 repeat protein [G 99.8 1.8E-17 3.9E-22 114.4 15.2 166 1-178 232-417 (514)
152 KOG0270 WD40 repeat-containing 99.8 5E-18 1.1E-22 116.5 12.4 144 22-178 242-404 (463)
153 KOG2048 WD40 repeat protein [G 99.8 7.8E-17 1.7E-21 115.8 18.6 164 2-178 88-275 (691)
154 KOG0307 Vesicle coat complex C 99.8 7.8E-19 1.7E-23 132.0 8.5 166 1-178 136-327 (1049)
155 KOG1273 WD40 repeat protein [G 99.8 5.8E-18 1.3E-22 112.2 10.9 124 56-179 26-184 (405)
156 KOG0300 WD40 repeat-containing 99.8 4.1E-17 8.8E-22 108.6 14.9 168 1-178 291-476 (481)
157 KOG1274 WD40 repeat protein [G 99.8 1E-16 2.2E-21 118.7 18.3 172 1-178 32-218 (933)
158 KOG0307 Vesicle coat complex C 99.8 2.8E-18 6E-23 129.1 9.6 167 1-179 87-285 (1049)
159 KOG1524 WD40 repeat-containing 99.8 2.6E-17 5.6E-22 116.0 12.9 147 1-174 123-282 (737)
160 KOG1007 WD repeat protein TSSC 99.8 2.3E-17 5.1E-22 108.1 11.3 144 22-177 122-288 (370)
161 KOG0649 WD40 repeat protein [G 99.8 4.3E-16 9.2E-21 100.1 16.8 171 2-179 30-236 (325)
162 KOG2110 Uncharacterized conser 99.7 9.3E-16 2E-20 103.5 18.5 122 4-125 106-249 (391)
163 KOG1034 Transcriptional repres 99.7 9.5E-17 2.1E-21 106.8 13.6 148 22-178 37-211 (385)
164 KOG0321 WD40 repeat-containing 99.7 1.5E-16 3.3E-21 113.8 15.4 171 1-179 119-348 (720)
165 KOG0639 Transducin-like enhanc 99.7 4.8E-17 1E-21 113.9 12.3 162 2-177 529-703 (705)
166 KOG1063 RNA polymerase II elon 99.7 4.3E-17 9.4E-22 117.4 12.2 148 19-177 521-698 (764)
167 KOG0642 Cell-cycle nuclear pro 99.7 1.1E-16 2.3E-21 113.0 13.7 166 1-178 313-561 (577)
168 KOG1523 Actin-related protein 99.7 1.1E-16 2.3E-21 106.2 12.8 147 22-176 9-174 (361)
169 KOG2106 Uncharacterized conser 99.7 1.9E-15 4.1E-20 105.9 18.5 173 1-177 387-625 (626)
170 KOG2919 Guanine nucleotide-bin 99.7 1.3E-16 2.8E-21 106.1 11.9 156 1-168 176-360 (406)
171 KOG0290 Conserved WD40 repeat- 99.7 3.9E-16 8.5E-21 102.5 13.9 175 4-178 73-318 (364)
172 KOG0771 Prolactin regulatory e 99.7 2E-16 4.4E-21 108.0 12.7 166 1-177 163-353 (398)
173 KOG1272 WD40-repeat-containing 99.7 2.5E-17 5.4E-22 114.0 8.1 156 4-176 191-360 (545)
174 KOG0268 Sof1-like rRNA process 99.7 3.8E-17 8.3E-22 110.0 8.2 128 1-129 207-350 (433)
175 KOG1272 WD40-repeat-containing 99.7 1.6E-17 3.4E-22 115.0 6.1 165 1-179 148-324 (545)
176 KOG0290 Conserved WD40 repeat- 99.7 3.1E-15 6.7E-20 98.4 15.5 158 3-174 120-361 (364)
177 KOG1188 WD40 repeat protein [G 99.7 6.5E-16 1.4E-20 103.3 12.2 126 43-178 58-196 (376)
178 KOG1009 Chromatin assembly com 99.7 2.7E-16 5.9E-21 107.1 10.6 124 1-125 33-196 (434)
179 KOG2139 WD40 repeat protein [G 99.7 5.2E-15 1.1E-19 100.0 16.3 153 2-168 118-300 (445)
180 KOG4328 WD40 protein [Function 99.7 1.8E-15 3.8E-20 104.6 14.2 122 49-177 318-449 (498)
181 COG2319 FOG: WD40 repeat [Gene 99.7 2.8E-14 6.1E-19 101.8 21.1 163 3-178 133-314 (466)
182 KOG1587 Cytoplasmic dynein int 99.7 1.2E-15 2.5E-20 111.1 13.8 166 1-178 312-516 (555)
183 KOG2445 Nuclear pore complex c 99.7 5.2E-15 1.1E-19 97.9 15.2 155 22-178 12-256 (361)
184 KOG1445 Tumor-specific antigen 99.7 1.7E-16 3.6E-21 114.2 7.5 114 53-178 627-750 (1012)
185 KOG1587 Cytoplasmic dynein int 99.7 1.1E-14 2.4E-19 106.2 16.2 163 4-178 222-472 (555)
186 PRK01742 tolB translocation pr 99.7 7.8E-15 1.7E-19 106.0 15.4 156 4-177 228-400 (429)
187 KOG0322 G-protein beta subunit 99.7 1.7E-15 3.6E-20 98.4 10.3 117 49-177 201-322 (323)
188 PRK11028 6-phosphogluconolacto 99.7 1.4E-13 2.9E-18 96.5 20.6 170 2-178 10-205 (330)
189 KOG1009 Chromatin assembly com 99.6 3.5E-15 7.5E-20 101.8 11.3 145 21-177 11-194 (434)
190 KOG1538 Uncharacterized conser 99.6 1.5E-14 3.2E-19 104.9 15.0 162 2-177 31-292 (1081)
191 KOG4378 Nuclear protein COP1 [ 99.6 1.3E-14 2.7E-19 101.8 13.9 119 49-178 117-239 (673)
192 KOG0650 WD40 repeat nucleolar 99.6 3.8E-15 8.2E-20 106.3 11.5 167 3-175 545-732 (733)
193 KOG1523 Actin-related protein 99.6 2.2E-14 4.7E-19 95.5 14.2 173 4-177 32-235 (361)
194 KOG2321 WD40 repeat protein [G 99.6 1.5E-14 3.3E-19 102.9 14.2 112 67-179 148-259 (703)
195 PRK01742 tolB translocation pr 99.6 2.6E-14 5.7E-19 103.3 15.8 160 3-178 183-361 (429)
196 KOG1963 WD40 repeat protein [G 99.6 6.4E-14 1.4E-18 103.5 17.7 114 51-177 203-321 (792)
197 KOG3881 Uncharacterized conser 99.6 6.4E-14 1.4E-18 95.4 16.1 167 2-179 123-321 (412)
198 KOG0642 Cell-cycle nuclear pro 99.6 3E-15 6.5E-20 105.8 9.5 127 49-178 290-426 (577)
199 KOG2394 WD40 protein DMR-N9 [G 99.6 7.4E-15 1.6E-19 103.6 11.1 113 54-178 220-362 (636)
200 KOG1517 Guanine nucleotide bin 99.6 2.7E-14 5.8E-19 107.9 14.5 170 2-178 1185-1381(1387)
201 PF08662 eIF2A: Eukaryotic tra 99.6 1.1E-13 2.3E-18 89.6 15.4 108 22-132 58-186 (194)
202 PRK04922 tolB translocation pr 99.6 9.7E-14 2.1E-18 100.5 16.9 161 4-178 184-368 (433)
203 COG2319 FOG: WD40 repeat [Gene 99.6 7.4E-13 1.6E-17 94.5 21.1 165 2-178 85-271 (466)
204 KOG2111 Uncharacterized conser 99.6 5.7E-13 1.2E-17 88.7 18.6 124 3-127 112-259 (346)
205 PRK03629 tolB translocation pr 99.6 3.3E-13 7E-18 97.6 18.6 161 4-178 179-363 (429)
206 KOG1524 WD40 repeat-containing 99.6 9.5E-15 2.1E-19 103.3 10.1 152 1-168 82-246 (737)
207 PRK05137 tolB translocation pr 99.6 3.2E-13 7E-18 97.9 18.3 161 4-178 182-366 (435)
208 KOG1310 WD40 repeat protein [G 99.6 1E-14 2.2E-19 103.4 9.6 129 49-179 46-179 (758)
209 KOG0771 Prolactin regulatory e 99.6 3E-14 6.5E-19 97.6 10.9 121 57-178 148-311 (398)
210 KOG0649 WD40 repeat protein [G 99.6 1E-13 2.2E-18 89.4 12.4 117 49-179 58-187 (325)
211 PRK02889 tolB translocation pr 99.6 6.5E-13 1.4E-17 96.0 17.5 161 4-178 176-360 (427)
212 KOG0974 WD-repeat protein WDR6 99.6 1.8E-13 3.8E-18 103.0 14.7 161 3-178 108-288 (967)
213 KOG1310 WD40 repeat protein [G 99.6 1.7E-14 3.7E-19 102.3 8.9 153 22-177 49-230 (758)
214 KOG1538 Uncharacterized conser 99.6 1.5E-14 3.4E-19 104.9 8.7 135 25-176 14-160 (1081)
215 PRK03629 tolB translocation pr 99.6 1.2E-12 2.6E-17 94.6 18.0 160 3-177 222-405 (429)
216 KOG4227 WD40 repeat protein [G 99.6 5.7E-14 1.2E-18 96.2 10.3 120 49-178 52-179 (609)
217 PRK11028 6-phosphogluconolacto 99.5 5.9E-12 1.3E-16 88.3 20.1 173 2-178 55-258 (330)
218 PRK05137 tolB translocation pr 99.5 2E-12 4.4E-17 93.8 18.0 161 3-178 225-412 (435)
219 KOG1240 Protein kinase contain 99.5 2.2E-13 4.7E-18 104.4 12.8 130 49-178 1044-1225(1431)
220 KOG4547 WD40 repeat-containing 99.5 2.7E-12 5.8E-17 91.6 16.8 162 2-177 13-219 (541)
221 TIGR02800 propeller_TolB tol-p 99.5 4.1E-12 8.9E-17 91.8 18.2 161 4-178 170-354 (417)
222 PRK04922 tolB translocation pr 99.5 4.5E-12 9.8E-17 91.9 17.9 159 4-177 228-410 (433)
223 KOG1409 Uncharacterized conser 99.5 1.5E-12 3.2E-17 87.8 13.8 78 49-126 193-272 (404)
224 KOG4227 WD40 repeat protein [G 99.5 1E-12 2.2E-17 90.2 13.2 147 21-178 54-225 (609)
225 KOG0644 Uncharacterized conser 99.5 1.7E-14 3.8E-19 106.6 4.5 114 49-178 186-300 (1113)
226 PRK02889 tolB translocation pr 99.5 6.2E-12 1.3E-16 91.0 16.9 152 4-170 220-392 (427)
227 KOG4497 Uncharacterized conser 99.5 3.4E-13 7.4E-18 90.5 8.8 153 2-176 69-238 (447)
228 KOG2139 WD40 repeat protein [G 99.5 2.2E-12 4.8E-17 87.5 12.4 140 24-177 99-267 (445)
229 KOG1517 Guanine nucleotide bin 99.5 8.7E-12 1.9E-16 94.8 16.6 170 1-178 1130-1333(1387)
230 KOG3881 Uncharacterized conser 99.5 2.7E-12 5.9E-17 87.6 12.6 131 4-134 173-330 (412)
231 PRK00178 tolB translocation pr 99.5 2.4E-11 5.2E-16 88.2 18.2 160 5-178 180-363 (430)
232 KOG0280 Uncharacterized conser 99.5 4.9E-12 1.1E-16 83.6 12.8 121 26-159 124-264 (339)
233 KOG2321 WD40 repeat protein [G 99.5 2.5E-12 5.4E-17 91.9 12.3 143 23-177 133-301 (703)
234 TIGR02800 propeller_TolB tol-p 99.5 2.9E-11 6.3E-16 87.4 17.9 152 4-170 214-386 (417)
235 PRK04792 tolB translocation pr 99.4 6.8E-11 1.5E-15 86.1 17.6 160 5-178 199-382 (448)
236 PRK01029 tolB translocation pr 99.4 9.3E-11 2E-15 84.8 17.7 161 5-178 212-403 (428)
237 KOG2315 Predicted translation 99.4 1.1E-10 2.5E-15 83.2 17.4 157 4-177 194-389 (566)
238 KOG2315 Predicted translation 99.4 2.4E-11 5.1E-16 86.5 13.7 127 4-133 251-398 (566)
239 KOG1354 Serine/threonine prote 99.4 9.1E-13 2E-17 88.8 6.3 155 22-177 163-358 (433)
240 KOG1963 WD40 repeat protein [G 99.4 1.2E-10 2.6E-15 86.7 17.6 172 4-178 181-375 (792)
241 KOG0644 Uncharacterized conser 99.4 4.9E-13 1.1E-17 99.2 5.3 98 22-124 189-300 (1113)
242 KOG1240 Protein kinase contain 99.4 5.5E-11 1.2E-15 91.7 16.2 168 1-179 1068-1274(1431)
243 KOG1064 RAVE (regulator of V-A 99.4 3.7E-12 8E-17 101.1 10.1 153 1-178 2227-2398(2439)
244 KOG0322 G-protein beta subunit 99.4 2.3E-12 5E-17 84.0 6.6 122 2-123 173-322 (323)
245 KOG4497 Uncharacterized conser 99.3 1.1E-10 2.4E-15 78.7 14.0 161 3-177 113-390 (447)
246 PRK00178 tolB translocation pr 99.3 5.9E-10 1.3E-14 81.0 17.7 159 4-177 223-405 (430)
247 PRK01029 tolB translocation pr 99.3 4.8E-10 1E-14 81.2 16.9 163 4-178 165-359 (428)
248 PF02239 Cytochrom_D1: Cytochr 99.3 3.2E-09 6.9E-14 75.4 20.0 165 2-178 14-202 (369)
249 PRK04792 tolB translocation pr 99.3 1.3E-09 2.8E-14 79.5 17.7 158 5-177 243-424 (448)
250 PF02239 Cytochrom_D1: Cytochr 99.2 3.8E-10 8.2E-15 80.0 12.2 99 68-179 10-109 (369)
251 TIGR02658 TTQ_MADH_Hv methylam 99.2 1.7E-08 3.6E-13 70.7 19.7 101 65-179 207-331 (352)
252 KOG4532 WD40-like repeat conta 99.2 3.5E-09 7.6E-14 69.7 15.1 165 1-169 135-323 (344)
253 COG2706 3-carboxymuconate cycl 99.2 1.6E-08 3.5E-13 69.0 18.2 167 3-178 15-221 (346)
254 PF00400 WD40: WD domain, G-be 99.2 8.5E-11 1.8E-15 55.9 5.3 38 85-122 2-39 (39)
255 KOG3914 WD repeat protein WDR4 99.2 6.7E-10 1.5E-14 76.4 11.4 95 72-179 130-224 (390)
256 KOG1334 WD40 repeat protein [G 99.2 2.8E-10 6.2E-15 80.1 9.3 170 1-176 161-364 (559)
257 KOG0280 Uncharacterized conser 99.2 6E-09 1.3E-13 69.3 14.7 112 57-179 125-242 (339)
258 PRK04043 tolB translocation pr 99.2 1.8E-08 3.9E-13 72.8 17.9 150 3-169 212-388 (419)
259 PF10282 Lactonase: Lactonase, 99.1 6.5E-08 1.4E-12 68.4 20.3 166 3-178 108-322 (345)
260 KOG1334 WD40 repeat protein [G 99.1 2.8E-09 6.1E-14 75.3 10.7 165 1-177 252-465 (559)
261 KOG0974 WD-repeat protein WDR6 99.1 4.4E-09 9.5E-14 80.0 11.7 100 65-177 146-245 (967)
262 COG5170 CDC55 Serine/threonine 99.0 4.1E-10 8.9E-15 75.6 5.2 154 22-176 171-365 (460)
263 COG5354 Uncharacterized protei 99.0 6.3E-08 1.4E-12 69.0 15.7 161 2-178 200-395 (561)
264 PLN02919 haloacid dehalogenase 99.0 4.1E-07 8.9E-12 72.7 21.8 124 56-179 742-889 (1057)
265 KOG3914 WD repeat protein WDR4 99.0 7.9E-09 1.7E-13 71.2 10.4 85 49-134 147-233 (390)
266 KOG2695 WD40 repeat protein [G 99.0 2.1E-09 4.5E-14 73.0 7.3 144 4-157 234-401 (425)
267 PF00400 WD40: WD domain, G-be 99.0 1.6E-09 3.5E-14 51.3 5.1 32 49-80 7-39 (39)
268 PF10282 Lactonase: Lactonase, 99.0 9.9E-07 2.2E-11 62.5 21.1 167 3-178 12-222 (345)
269 PF11768 DUF3312: Protein of u 99.0 1.1E-07 2.5E-12 68.9 16.1 74 51-126 257-331 (545)
270 KOG4714 Nucleoporin [Nuclear s 99.0 3.8E-09 8.3E-14 69.2 7.8 121 54-176 180-316 (319)
271 COG2706 3-carboxymuconate cycl 99.0 1.3E-06 2.9E-11 59.9 20.2 173 2-178 62-274 (346)
272 PRK04043 tolB translocation pr 99.0 4E-07 8.7E-12 65.9 18.8 157 5-178 170-357 (419)
273 KOG4547 WD40 repeat-containing 99.0 2.8E-07 6E-12 66.6 17.2 122 2-125 78-221 (541)
274 PF15492 Nbas_N: Neuroblastoma 99.0 5.5E-07 1.2E-11 60.0 17.3 153 26-179 46-260 (282)
275 KOG0309 Conserved WD40 repeat- 98.9 2.3E-09 5E-14 79.4 6.3 118 49-178 110-232 (1081)
276 KOG4190 Uncharacterized conser 98.9 4.7E-09 1E-13 75.8 7.3 134 1-135 754-917 (1034)
277 COG4946 Uncharacterized protei 98.9 4.5E-07 9.6E-12 64.6 16.6 117 49-178 355-477 (668)
278 KOG1064 RAVE (regulator of V-A 98.9 1.5E-08 3.2E-13 81.7 9.9 129 49-178 2204-2366(2439)
279 KOG4532 WD40-like repeat conta 98.9 8.7E-07 1.9E-11 58.8 16.4 117 56-179 161-283 (344)
280 KOG2041 WD40 repeat protein [G 98.9 2.1E-08 4.6E-13 74.5 9.0 144 21-178 12-186 (1189)
281 KOG4190 Uncharacterized conser 98.9 5.9E-09 1.3E-13 75.3 5.9 129 49-179 731-907 (1034)
282 PF11768 DUF3312: Protein of u 98.9 4.4E-08 9.6E-13 71.0 10.2 107 57-178 209-329 (545)
283 PF04762 IKI3: IKI3 family; I 98.8 9.7E-07 2.1E-11 69.6 17.5 113 55-178 211-333 (928)
284 KOG1275 PAB-dependent poly(A) 98.8 1.4E-07 3E-12 71.7 12.1 157 5-176 158-340 (1118)
285 KOG2041 WD40 repeat protein [G 98.8 9.3E-08 2E-12 71.2 10.9 111 54-174 15-141 (1189)
286 KOG2695 WD40 repeat protein [G 98.8 1.1E-08 2.5E-13 69.6 5.4 115 53-178 252-376 (425)
287 PRK02888 nitrous-oxide reducta 98.8 7.7E-07 1.7E-11 66.1 15.0 171 3-178 214-404 (635)
288 PLN02919 haloacid dehalogenase 98.8 9.6E-06 2.1E-10 65.2 21.2 119 57-178 686-833 (1057)
289 KOG1354 Serine/threonine prote 98.7 7.2E-08 1.6E-12 65.8 7.5 127 49-178 160-301 (433)
290 PF13360 PQQ_2: PQQ-like domai 98.7 7.9E-06 1.7E-10 54.7 16.9 132 2-134 1-150 (238)
291 KOG4640 Anaphase-promoting com 98.7 2.4E-07 5.2E-12 67.8 8.7 92 54-157 21-114 (665)
292 COG4946 Uncharacterized protei 98.6 1.1E-05 2.4E-10 57.8 16.3 136 20-168 356-508 (668)
293 KOG1912 WD40 repeat protein [G 98.6 1.3E-06 2.9E-11 65.7 12.2 139 24-176 16-184 (1062)
294 KOG2314 Translation initiation 98.6 1E-06 2.3E-11 63.8 11.3 125 26-164 213-362 (698)
295 TIGR02658 TTQ_MADH_Hv methylam 98.6 1.3E-05 2.8E-10 56.5 16.2 111 4-134 27-146 (352)
296 KOG0882 Cyclophilin-related pe 98.6 2.2E-06 4.8E-11 60.7 12.3 129 49-178 140-305 (558)
297 KOG0309 Conserved WD40 repeat- 98.6 2.1E-07 4.6E-12 69.5 7.3 108 21-128 112-236 (1081)
298 COG5354 Uncharacterized protei 98.6 4E-06 8.8E-11 60.1 12.7 121 4-126 255-397 (561)
299 PF07433 DUF1513: Protein of u 98.6 6.7E-05 1.4E-09 51.5 18.0 168 5-179 29-248 (305)
300 KOG4714 Nucleoporin [Nuclear s 98.5 2E-07 4.2E-12 61.4 5.0 72 96-178 181-254 (319)
301 KOG1409 Uncharacterized conser 98.5 2.1E-06 4.5E-11 58.8 9.7 165 1-178 43-270 (404)
302 PF08450 SGL: SMP-30/Gluconola 98.5 8.5E-05 1.8E-09 50.2 18.9 150 4-167 60-244 (246)
303 PF04762 IKI3: IKI3 family; I 98.5 1.7E-05 3.7E-10 62.8 16.1 170 4-177 237-455 (928)
304 KOG1645 RING-finger-containing 98.5 1.2E-06 2.7E-11 61.0 8.6 78 49-127 189-269 (463)
305 KOG2314 Translation initiation 98.5 1.3E-05 2.9E-10 58.3 13.9 110 54-177 446-572 (698)
306 KOG1645 RING-finger-containing 98.5 5.4E-07 1.2E-11 62.7 6.8 91 76-179 175-267 (463)
307 KOG3617 WD40 and TPR repeat-co 98.5 2.2E-06 4.7E-11 65.4 10.3 103 22-124 14-131 (1416)
308 KOG1832 HIV-1 Vpr-binding prot 98.5 1.7E-07 3.6E-12 71.5 4.5 155 2-179 1121-1292(1516)
309 KOG3621 WD40 repeat-containing 98.5 2.6E-06 5.6E-11 63.3 10.4 112 60-178 40-154 (726)
310 PF04053 Coatomer_WDAD: Coatom 98.5 3.3E-05 7.2E-10 56.3 16.0 133 22-176 31-171 (443)
311 KOG1920 IkappaB kinase complex 98.5 2.4E-05 5.2E-10 61.7 15.9 111 58-178 200-322 (1265)
312 PF13360 PQQ_2: PQQ-like domai 98.5 0.00011 2.5E-09 49.1 17.3 161 2-179 44-231 (238)
313 KOG2066 Vacuolar assembly/sort 98.5 3.2E-06 6.9E-11 63.7 10.1 99 65-178 84-187 (846)
314 PF07433 DUF1513: Protein of u 98.4 0.00017 3.7E-09 49.6 17.8 148 3-167 76-275 (305)
315 COG5170 CDC55 Serine/threonine 98.4 1.3E-06 2.8E-11 59.3 6.8 126 49-178 168-309 (460)
316 TIGR03300 assembly_YfgL outer 98.4 0.0001 2.2E-09 53.0 16.9 126 2-131 73-215 (377)
317 TIGR03300 assembly_YfgL outer 98.4 8.2E-05 1.8E-09 53.5 15.9 97 65-178 242-338 (377)
318 PF15492 Nbas_N: Neuroblastoma 98.3 0.00014 3.1E-09 48.9 14.6 114 22-135 146-270 (282)
319 PF03178 CPSF_A: CPSF A subuni 98.3 0.00031 6.7E-09 49.5 17.3 163 4-178 2-202 (321)
320 KOG1832 HIV-1 Vpr-binding prot 98.3 9.8E-07 2.1E-11 67.5 4.9 115 49-179 1097-1215(1516)
321 PF08450 SGL: SMP-30/Gluconola 98.3 0.00031 6.7E-09 47.5 20.7 159 4-177 22-212 (246)
322 KOG1008 Uncharacterized conser 98.3 6.6E-07 1.4E-11 65.9 3.0 166 2-178 78-275 (783)
323 smart00320 WD40 WD40 repeats. 98.3 3.7E-06 8E-11 38.6 4.7 38 85-122 3-40 (40)
324 KOG1912 WD40 repeat protein [G 98.3 0.00016 3.6E-09 55.0 15.0 120 4-123 35-185 (1062)
325 KOG4640 Anaphase-promoting com 98.2 6.4E-06 1.4E-10 60.7 7.5 73 94-179 20-93 (665)
326 PF08553 VID27: VID27 cytoplas 98.2 9.3E-05 2E-09 57.3 13.8 121 3-124 503-647 (794)
327 PF14783 BBS2_Mid: Ciliary BBS 98.2 0.00029 6.2E-09 41.0 13.6 100 56-174 2-110 (111)
328 KOG0882 Cyclophilin-related pe 98.1 4.8E-05 1E-09 54.2 9.6 174 3-179 29-232 (558)
329 KOG2066 Vacuolar assembly/sort 98.1 0.00035 7.5E-09 53.3 14.1 120 1-124 90-233 (846)
330 COG0823 TolB Periplasmic compo 98.1 6.8E-05 1.5E-09 54.5 10.3 123 5-128 219-362 (425)
331 COG0823 TolB Periplasmic compo 98.0 0.00028 6.1E-09 51.4 12.6 142 22-177 191-357 (425)
332 PF15390 DUF4613: Domain of un 98.0 0.00056 1.2E-08 50.7 13.6 142 23-176 19-184 (671)
333 smart00320 WD40 WD40 repeats. 98.0 2.4E-05 5.2E-10 35.8 4.5 32 49-80 8-40 (40)
334 PF08596 Lgl_C: Lethal giant l 98.0 0.00036 7.7E-09 50.4 12.1 86 88-178 80-173 (395)
335 KOG2079 Vacuolar assembly/sort 98.0 0.0001 2.2E-09 57.8 9.5 102 65-177 100-202 (1206)
336 KOG1275 PAB-dependent poly(A) 97.9 0.00028 6E-09 54.7 10.5 117 3-122 196-340 (1118)
337 PF12894 Apc4_WD40: Anaphase-p 97.8 0.00011 2.4E-09 35.9 5.2 34 94-128 11-44 (47)
338 PRK11138 outer membrane biogen 97.8 0.0043 9.2E-08 45.1 15.5 97 65-177 295-393 (394)
339 KOG1008 Uncharacterized conser 97.8 6.7E-06 1.5E-10 60.8 0.6 113 49-176 98-223 (783)
340 KOG4649 PQQ (pyrrolo-quinoline 97.8 0.0045 9.7E-08 41.7 14.6 70 65-134 64-133 (354)
341 PRK02888 nitrous-oxide reducta 97.7 0.0021 4.6E-08 48.6 12.9 59 105-178 287-351 (635)
342 KOG4649 PQQ (pyrrolo-quinoline 97.7 0.002 4.4E-08 43.3 11.4 103 61-178 18-123 (354)
343 KOG3617 WD40 and TPR repeat-co 97.7 8.8E-05 1.9E-09 57.1 5.7 107 57-177 19-130 (1416)
344 KOG2114 Vacuolar assembly/sort 97.7 0.0004 8.6E-09 53.4 9.0 115 61-176 31-153 (933)
345 KOG1920 IkappaB kinase complex 97.7 0.0046 9.9E-08 49.7 14.6 140 24-176 69-272 (1265)
346 PRK11138 outer membrane biogen 97.7 0.0031 6.7E-08 45.8 12.7 159 2-178 128-312 (394)
347 KOG2114 Vacuolar assembly/sort 97.6 0.0035 7.5E-08 48.6 12.4 119 49-178 60-201 (933)
348 PF12894 Apc4_WD40: Anaphase-p 97.6 0.00031 6.6E-09 34.3 4.7 31 148-178 11-41 (47)
349 PF06977 SdiA-regulated: SdiA- 97.6 0.0085 1.8E-07 40.6 12.7 150 22-176 20-199 (248)
350 PF03178 CPSF_A: CPSF A subuni 97.5 0.016 3.5E-07 40.9 17.2 118 4-124 62-202 (321)
351 PF08553 VID27: VID27 cytoplas 97.5 0.0033 7.3E-08 49.1 11.1 98 66-177 544-646 (794)
352 KOG2395 Protein involved in va 97.5 0.0047 1E-07 45.5 11.0 119 5-124 357-500 (644)
353 PF06977 SdiA-regulated: SdiA- 97.4 0.0098 2.1E-07 40.3 11.8 121 49-177 17-146 (248)
354 COG3391 Uncharacterized conser 97.4 0.024 5.1E-07 41.2 18.1 162 3-177 95-282 (381)
355 PF06433 Me-amine-dh_H: Methyl 97.4 0.02 4.3E-07 40.3 16.5 107 60-179 190-321 (342)
356 PRK13616 lipoprotein LpqB; Pro 97.4 0.019 4.2E-07 43.9 14.1 139 25-177 351-524 (591)
357 PF14583 Pectate_lyase22: Olig 97.4 0.026 5.6E-07 40.5 16.0 169 4-176 168-379 (386)
358 COG3391 Uncharacterized conser 97.3 0.033 7.1E-07 40.4 17.6 159 6-178 13-190 (381)
359 PF10168 Nup88: Nuclear pore c 97.3 0.017 3.7E-07 45.1 13.1 82 95-178 85-179 (717)
360 PRK13616 lipoprotein LpqB; Pro 97.3 0.0098 2.1E-07 45.5 11.6 115 52-174 348-472 (591)
361 COG3490 Uncharacterized protei 97.3 0.028 6.2E-07 38.5 13.9 140 13-166 57-243 (366)
362 COG3204 Uncharacterized protei 97.1 0.042 9.2E-07 37.8 14.0 151 23-176 85-261 (316)
363 KOG3621 WD40 repeat-containing 97.1 0.0055 1.2E-07 46.5 8.6 73 53-125 76-155 (726)
364 COG3204 Uncharacterized protei 97.1 0.044 9.5E-07 37.7 11.7 120 51-177 83-209 (316)
365 PF00930 DPPIV_N: Dipeptidyl p 97.1 0.039 8.5E-07 39.6 12.4 18 148-165 183-200 (353)
366 PF05694 SBP56: 56kDa selenium 97.0 0.037 8E-07 40.3 11.8 110 4-113 222-392 (461)
367 PF04053 Coatomer_WDAD: Coatom 97.0 0.048 1E-06 40.3 12.5 117 3-125 125-263 (443)
368 KOG4499 Ca2+-binding protein R 97.0 0.022 4.7E-07 38.0 9.3 99 57-167 161-273 (310)
369 PF12234 Rav1p_C: RAVE protein 97.0 0.013 2.9E-07 44.7 9.5 78 3-81 50-155 (631)
370 COG3490 Uncharacterized protei 96.9 0.073 1.6E-06 36.6 12.7 129 28-167 40-180 (366)
371 PF10313 DUF2415: Uncharacteri 96.9 0.006 1.3E-07 29.0 4.7 31 95-125 1-34 (43)
372 PF10313 DUF2415: Uncharacteri 96.8 0.006 1.3E-07 29.0 4.5 29 150-178 2-33 (43)
373 KOG2444 WD40 repeat protein [G 96.8 0.0077 1.7E-07 39.7 6.4 103 65-178 71-177 (238)
374 PF12234 Rav1p_C: RAVE protein 96.8 0.059 1.3E-06 41.4 11.7 95 71-176 48-154 (631)
375 PF00930 DPPIV_N: Dipeptidyl p 96.8 0.0054 1.2E-07 43.9 6.0 99 73-176 22-129 (353)
376 PF04841 Vps16_N: Vps16, N-ter 96.7 0.14 3.1E-06 37.6 14.7 41 94-134 216-256 (410)
377 PF02897 Peptidase_S9_N: Proly 96.7 0.051 1.1E-06 39.8 10.7 113 56-177 126-259 (414)
378 PF10168 Nup88: Nuclear pore c 96.7 0.038 8.3E-07 43.3 10.2 60 25-84 86-181 (717)
379 COG5167 VID27 Protein involved 96.6 0.097 2.1E-06 39.0 11.0 59 65-124 574-632 (776)
380 PF14783 BBS2_Mid: Ciliary BBS 96.5 0.064 1.4E-06 31.4 10.8 65 53-120 42-110 (111)
381 KOG3630 Nuclear pore complex, 96.5 0.039 8.5E-07 44.6 9.4 100 56-165 158-260 (1405)
382 cd00216 PQQ_DH Dehydrogenases 96.5 0.24 5.1E-06 37.4 16.0 105 66-179 303-425 (488)
383 PF07569 Hira: TUP1-like enhan 96.5 0.053 1.1E-06 36.1 8.9 73 102-177 18-94 (219)
384 COG3386 Gluconolactonase [Carb 96.4 0.084 1.8E-06 37.1 9.8 100 56-168 165-275 (307)
385 PF08596 Lgl_C: Lethal giant l 96.4 0.24 5.2E-06 36.2 12.4 76 49-124 82-173 (395)
386 KOG2395 Protein involved in va 96.4 0.049 1.1E-06 40.5 8.5 102 67-176 349-457 (644)
387 COG3386 Gluconolactonase [Carb 96.3 0.23 5E-06 35.0 15.7 70 55-124 112-193 (307)
388 PF05694 SBP56: 56kDa selenium 96.3 0.29 6.2E-06 36.0 16.7 121 57-178 184-342 (461)
389 KOG4460 Nuclear pore complex, 96.3 0.11 2.3E-06 38.9 9.8 82 96-178 105-198 (741)
390 KOG2079 Vacuolar assembly/sort 96.2 0.039 8.5E-07 44.3 7.9 69 53-123 130-202 (1206)
391 KOG1897 Damage-specific DNA bi 96.2 0.51 1.1E-05 38.1 17.8 159 5-175 751-939 (1096)
392 PF05096 Glu_cyclase_2: Glutam 96.0 0.28 6.2E-06 33.5 13.3 107 56-178 47-157 (264)
393 PF04841 Vps16_N: Vps16, N-ter 96.0 0.42 9.1E-06 35.2 15.8 29 148-176 216-244 (410)
394 KOG1900 Nuclear pore complex, 96.0 0.29 6.3E-06 40.5 11.7 122 2-125 97-273 (1311)
395 PHA02713 hypothetical protein; 95.9 0.55 1.2E-05 36.1 13.1 63 104-178 462-533 (557)
396 PF14870 PSII_BNR: Photosynthe 95.9 0.39 8.4E-06 33.8 15.9 112 49-169 140-253 (302)
397 KOG3630 Nuclear pore complex, 95.7 0.036 7.7E-07 44.9 5.9 109 55-176 102-226 (1405)
398 PF14655 RAB3GAP2_N: Rab3 GTPa 95.7 0.22 4.7E-06 36.6 9.5 86 49-134 303-408 (415)
399 PF00780 CNH: CNH domain; Int 95.5 0.48 1E-05 32.6 11.4 63 65-130 8-70 (275)
400 cd00216 PQQ_DH Dehydrogenases 95.2 0.96 2.1E-05 34.2 18.8 106 72-179 173-320 (488)
401 TIGR02604 Piru_Ver_Nterm putat 95.1 0.85 1.8E-05 33.1 12.4 57 56-113 74-142 (367)
402 PF07569 Hira: TUP1-like enhan 95.1 0.47 1E-05 31.7 8.9 62 65-127 23-98 (219)
403 PF14655 RAB3GAP2_N: Rab3 GTPa 95.1 0.75 1.6E-05 33.9 10.4 39 95-133 308-346 (415)
404 TIGR03074 PQQ_membr_DH membran 95.1 1.2 2.7E-05 35.6 12.3 69 65-133 195-287 (764)
405 TIGR02276 beta_rpt_yvtn 40-res 95.0 0.1 2.2E-06 24.4 4.2 31 104-134 1-32 (42)
406 PF12657 TFIIIC_delta: Transcr 94.9 0.5 1.1E-05 30.3 8.5 30 148-177 85-120 (173)
407 KOG1898 Splicing factor 3b, su 94.9 1.8 3.8E-05 35.6 16.5 156 5-176 854-1046(1205)
408 PF08728 CRT10: CRT10; InterP 94.8 1.6 3.4E-05 34.5 12.7 113 55-177 102-245 (717)
409 PF00780 CNH: CNH domain; Int 94.6 0.96 2.1E-05 31.1 11.9 108 54-178 36-165 (275)
410 PRK10115 protease 2; Provision 94.5 1.9 4.2E-05 34.2 13.6 70 55-126 128-209 (686)
411 PF10647 Gmad1: Lipoprotein Lp 94.5 0.99 2.2E-05 30.9 16.3 144 24-170 24-187 (253)
412 PF10647 Gmad1: Lipoprotein Lp 94.4 1 2.2E-05 30.8 13.3 111 55-175 25-141 (253)
413 PF05096 Glu_cyclase_2: Glutam 94.2 1.2 2.6E-05 30.6 14.9 160 4-168 68-250 (264)
414 PF14870 PSII_BNR: Photosynthe 94.2 1.4 3E-05 31.1 15.8 139 23-175 144-301 (302)
415 PHA03098 kelch-like protein; P 93.9 2.2 4.7E-05 32.6 15.3 102 65-178 391-511 (534)
416 KOG2444 WD40 repeat protein [G 93.9 0.19 4.2E-06 33.4 4.8 61 65-125 115-178 (238)
417 PF11715 Nup160: Nucleoporin N 93.7 0.45 9.7E-06 36.4 7.3 69 64-132 157-256 (547)
418 TIGR03075 PQQ_enz_alc_DH PQQ-d 93.7 2.3 5E-05 32.6 10.8 68 65-134 70-148 (527)
419 PF06433 Me-amine-dh_H: Methyl 93.4 2.1 4.5E-05 30.7 15.4 162 4-178 17-213 (342)
420 KOG2377 Uncharacterized conser 93.4 2.5 5.5E-05 31.5 11.8 73 93-175 65-137 (657)
421 PF11715 Nup160: Nucleoporin N 93.3 1.7 3.7E-05 33.4 9.8 76 104-179 156-249 (547)
422 PF07995 GSDH: Glucose / Sorbo 93.2 2.3 4.9E-05 30.5 10.9 49 56-105 4-59 (331)
423 PF03088 Str_synth: Strictosid 92.8 0.89 1.9E-05 25.6 5.8 42 112-166 33-74 (89)
424 PF10214 Rrn6: RNA polymerase 92.6 4.6 0.0001 32.6 13.4 95 54-159 146-257 (765)
425 PF13449 Phytase-like: Esteras 92.4 3 6.5E-05 29.8 12.9 71 97-168 87-166 (326)
426 PF07676 PD40: WD40-like Beta 92.3 0.57 1.2E-05 21.5 5.0 30 92-121 6-38 (39)
427 PF10214 Rrn6: RNA polymerase 92.3 5.1 0.00011 32.4 12.4 30 148-177 145-175 (765)
428 COG3823 Glutamine cyclotransfe 92.0 2.5 5.5E-05 28.1 11.2 102 65-167 141-247 (262)
429 COG4590 ABC-type uncharacteriz 91.7 3.1 6.7E-05 31.1 8.8 100 66-179 282-387 (733)
430 PHA02713 hypothetical protein; 91.6 5.2 0.00011 31.0 14.4 49 65-115 353-408 (557)
431 KOG2247 WD40 repeat-containing 91.6 0.075 1.6E-06 39.3 0.7 127 25-164 36-175 (615)
432 KOG4441 Proteins containing BT 91.2 6 0.00013 30.8 11.2 70 57-128 326-408 (571)
433 KOG2377 Uncharacterized conser 91.1 5.2 0.00011 30.0 11.9 102 52-167 65-172 (657)
434 KOG1916 Nuclear protein, conta 91.1 0.29 6.3E-06 39.2 3.4 125 49-177 128-264 (1283)
435 PF03088 Str_synth: Strictosid 90.9 1.4 3.1E-05 24.8 5.3 39 3-41 36-74 (89)
436 KOG1916 Nuclear protein, conta 90.8 1.2 2.6E-05 36.0 6.4 68 56-124 183-265 (1283)
437 smart00564 PQQ beta-propeller 90.7 0.68 1.5E-05 20.1 3.3 23 108-130 8-30 (33)
438 KOG4441 Proteins containing BT 90.3 7.2 0.00016 30.4 14.9 65 65-131 429-506 (571)
439 PF14761 HPS3_N: Hermansky-Pud 90.3 3.9 8.5E-05 27.2 10.3 49 65-114 29-79 (215)
440 PF14583 Pectate_lyase22: Olig 90.1 5.9 0.00013 29.0 15.5 99 53-165 187-299 (386)
441 PF14781 BBS2_N: Ciliary BBSom 90.0 3 6.5E-05 25.5 12.1 93 60-167 5-115 (136)
442 PF07250 Glyoxal_oxid_N: Glyox 90.0 2.8 6E-05 28.6 6.9 88 76-170 48-139 (243)
443 PF01011 PQQ: PQQ enzyme repea 89.8 1 2.3E-05 20.6 3.5 28 108-135 2-29 (38)
444 PRK13684 Ycf48-like protein; P 89.5 6.1 0.00013 28.4 12.1 109 54-173 173-283 (334)
445 PF02897 Peptidase_S9_N: Proly 89.1 7.4 0.00016 28.7 16.7 101 26-126 126-262 (414)
446 PF14781 BBS2_N: Ciliary BBSom 88.8 3.8 8.3E-05 25.1 8.2 64 101-178 5-81 (136)
447 KOG3616 Selective LIM binding 88.7 2.1 4.5E-05 34.1 6.2 40 94-133 14-53 (1636)
448 PHA03098 kelch-like protein; P 88.3 9.9 0.00021 29.2 10.5 62 65-128 344-418 (534)
449 PF12768 Rax2: Cortical protei 88.2 7 0.00015 27.4 9.9 54 74-127 16-75 (281)
450 PF14761 HPS3_N: Hermansky-Pud 87.4 6.6 0.00014 26.2 14.4 39 3-41 37-77 (215)
451 PF13570 PQQ_3: PQQ-like domai 87.2 1.3 2.7E-05 20.5 3.0 21 159-179 20-40 (40)
452 KOG4460 Nuclear pore complex, 87.2 12 0.00025 28.8 11.4 34 96-129 167-203 (741)
453 KOG2109 WD40 repeat protein [G 86.6 0.47 1E-05 36.6 1.8 95 76-171 297-391 (788)
454 TIGR03032 conserved hypothetic 86.5 9.7 0.00021 27.2 9.9 89 60-161 209-317 (335)
455 PF01436 NHL: NHL repeat; Int 86.5 1.7 3.6E-05 18.4 3.9 25 151-175 4-28 (28)
456 COG5276 Uncharacterized conser 86.3 9.6 0.00021 27.0 12.7 109 55-178 88-199 (370)
457 TIGR03074 PQQ_membr_DH membran 85.9 17 0.00038 29.5 20.2 105 73-179 335-478 (764)
458 PF08801 Nucleoporin_N: Nup133 85.4 13 0.00028 27.6 13.4 30 149-178 190-219 (422)
459 PF05935 Arylsulfotrans: Aryls 85.0 15 0.00032 28.0 11.4 115 59-176 153-299 (477)
460 PRK13684 Ycf48-like protein; P 85.0 12 0.00026 26.9 16.0 139 24-176 173-329 (334)
461 PF11635 Med16: Mediator compl 84.9 7.4 0.00016 31.5 7.6 77 95-173 260-345 (753)
462 COG5308 NUP170 Nuclear pore co 84.7 21 0.00046 29.5 11.4 71 54-126 182-277 (1263)
463 PHA02790 Kelch-like protein; P 84.6 16 0.00034 27.9 10.1 61 65-127 273-342 (480)
464 PF13449 Phytase-like: Esteras 84.4 13 0.00028 26.7 12.7 106 57-166 88-232 (326)
465 PF14269 Arylsulfotran_2: Aryl 84.4 5.1 0.00011 28.3 6.0 36 97-132 146-181 (299)
466 TIGR03075 PQQ_enz_alc_DH PQQ-d 84.2 17 0.00037 28.1 19.3 104 73-179 180-334 (527)
467 COG1520 FOG: WD40-like repeat 83.8 14 0.00031 26.8 10.1 70 65-135 69-140 (370)
468 PF14779 BBS1: Ciliary BBSome 83.7 7.2 0.00016 26.9 6.2 73 94-175 176-255 (257)
469 TIGR03118 PEPCTERM_chp_1 conse 83.5 14 0.0003 26.4 7.9 76 96-177 24-117 (336)
470 COG3823 Glutamine cyclotransfe 83.3 11 0.00023 25.4 6.5 71 65-135 57-130 (262)
471 KOG1900 Nuclear pore complex, 83.3 29 0.00062 29.9 10.8 31 148-178 242-272 (1311)
472 TIGR02171 Fb_sc_TIGR02171 Fibr 83.2 16 0.00034 30.1 8.6 52 74-126 329-387 (912)
473 COG5167 VID27 Protein involved 82.8 20 0.00042 27.7 12.0 60 105-177 572-631 (776)
474 smart00036 CNH Domain found in 82.7 13 0.00027 26.4 7.4 58 106-178 13-73 (302)
475 TIGR03606 non_repeat_PQQ dehyd 82.7 19 0.0004 27.3 12.4 55 52-106 28-90 (454)
476 PF01731 Arylesterase: Arylest 82.6 6.6 0.00014 22.0 5.3 29 150-178 55-84 (86)
477 PF01731 Arylesterase: Arylest 82.5 6.6 0.00014 22.0 6.4 49 74-125 36-85 (86)
478 PF14269 Arylsulfotran_2: Aryl 81.6 16 0.00035 25.9 9.7 68 56-123 146-219 (299)
479 KOG3616 Selective LIM binding 81.5 6 0.00013 31.8 5.7 67 54-123 15-82 (1636)
480 TIGR03118 PEPCTERM_chp_1 conse 81.1 17 0.00038 25.9 12.8 115 55-177 24-169 (336)
481 PHA02790 Kelch-like protein; P 80.9 23 0.00049 27.0 15.3 97 65-178 364-470 (480)
482 PF14779 BBS1: Ciliary BBSome 79.8 17 0.00038 25.1 8.4 67 54-121 177-255 (257)
483 KOG4499 Ca2+-binding protein R 79.1 18 0.00039 24.8 10.9 39 65-103 224-262 (310)
484 PF12341 DUF3639: Protein of u 77.4 4.6 0.0001 17.1 3.7 25 150-176 3-27 (27)
485 KOG3611 Semaphorins [Signal tr 76.7 39 0.00085 27.5 10.2 71 94-174 407-489 (737)
486 PF07995 GSDH: Glucose / Sorbo 76.7 15 0.00031 26.5 6.3 70 95-173 253-330 (331)
487 KOG2280 Vacuolar assembly/sort 76.3 40 0.00086 27.3 12.8 42 95-136 217-258 (829)
488 TIGR02604 Piru_Ver_Nterm putat 75.9 28 0.00061 25.4 11.9 19 149-167 124-142 (367)
489 PF08728 CRT10: CRT10; InterP 74.7 33 0.00071 27.7 7.9 71 53-123 163-245 (717)
490 KOG3522 Predicted guanine nucl 74.1 28 0.00062 28.4 7.4 72 52-126 625-699 (925)
491 TIGR02171 Fb_sc_TIGR02171 Fibr 74.0 14 0.00029 30.5 5.8 51 116-179 329-386 (912)
492 KOG1983 Tomosyn and related SN 73.9 17 0.00036 30.6 6.5 26 103-128 243-268 (993)
493 PF15390 DUF4613: Domain of un 73.8 42 0.00091 26.4 13.1 58 99-167 343-403 (671)
494 TIGR03606 non_repeat_PQQ dehyd 73.4 38 0.00083 25.7 10.6 63 93-160 28-90 (454)
495 KOG1896 mRNA cleavage and poly 72.6 63 0.0014 27.9 15.4 115 51-178 1095-1213(1366)
496 PF14727 PHTB1_N: PTHB1 N-term 72.0 40 0.00086 25.3 14.6 121 1-122 44-202 (418)
497 COG4257 Vgb Streptogramin lyas 71.7 33 0.00071 24.3 9.3 110 57-176 65-184 (353)
498 KOG2280 Vacuolar assembly/sort 71.5 53 0.0012 26.7 15.4 56 55-111 85-144 (829)
499 COG1770 PtrB Protease II [Amin 66.8 20 0.00043 28.4 5.2 58 97-168 131-193 (682)
500 TIGR03032 conserved hypothetic 65.5 19 0.00041 25.8 4.5 48 105-167 212-259 (335)
No 1
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=7.9e-36 Score=214.09 Aligned_cols=165 Identities=22% Similarity=0.384 Sum_probs=151.6
Q ss_pred CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe-----------CCCcee--eecccCceeEEEEeeC-C
Q 038439 1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY-----------QSTAPC--VHGHKKAVSYVKFLSN-D 65 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~--~~~~~~~i~~~~~~~~-~ 65 (179)
|+|+++++|++.+..++..+. |..||..++|+|.| ++++++ ....++ +.+|...|.|+.|+|+ .
T Consensus 470 SED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~G-yYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~ 548 (707)
T KOG0263|consen 470 SEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRG-YYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSN 548 (707)
T ss_pred cCCcceeeeecccceeEEEecCCCcceeeEEecCCc-eEEEecCCCceeeeeecccCCchhhhcccccccceEEECCccc
Confidence 689999999999999988886 88999999999999 777776 333444 8899999999999999 9
Q ss_pred eEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCccc
Q 038439 66 ELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDED 145 (179)
Q Consensus 66 ~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 145 (179)
++++||.|.+||+||+.+|..++.|.+|.++|.+++|+|+|++|++|+.|+.|++||+.+++++..+. +
T Consensus 549 Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~-----------~ 617 (707)
T KOG0263|consen 549 YVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLK-----------G 617 (707)
T ss_pred ccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhh-----------c
Confidence 99999999999999999999999999999999999999999999999999999999999999887654 2
Q ss_pred CCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439 146 AGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 146 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
| .+.|.++.|+.+|..|++|+.|..|++||+.
T Consensus 618 H-t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~ 649 (707)
T KOG0263|consen 618 H-TGTIYSLSFSRDGNVLASGGADNSVRLWDLT 649 (707)
T ss_pred c-cCceeEEEEecCCCEEEecCCCCeEEEEEch
Confidence 3 7789999999999999999999999999974
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.5e-35 Score=200.10 Aligned_cols=166 Identities=23% Similarity=0.330 Sum_probs=148.1
Q ss_pred CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe----------CCCcee--eecccCceeEEEEeeC-Ce
Q 038439 1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY----------QSTAPC--VHGHKKAVSYVKFLSN-DE 66 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~----------~~~~~~--~~~~~~~i~~~~~~~~-~~ 66 (179)
+.||++++|++.+..++..+. |..+|..++|+|+|+.+..++ +++..+ ..+|...|.+++|+|+ .+
T Consensus 238 s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL 317 (459)
T KOG0272|consen 238 SADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSL 317 (459)
T ss_pred ccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCce
Confidence 579999999999988888886 889999999999996555555 444444 8899999999999999 99
Q ss_pred EEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccC
Q 038439 67 LASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDA 146 (179)
Q Consensus 67 l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 146 (179)
++||+.|..-||||+++++++..+.+|..+|..++|+|+|-.+++|+.|++++|||++..+++..+. .
T Consensus 318 ~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ip--A---------- 385 (459)
T KOG0272|consen 318 AATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIP--A---------- 385 (459)
T ss_pred eeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecc--c----------
Confidence 9999999999999999999999999999999999999999999999999999999999988754433 2
Q ss_pred CcceEEEEEEcc-CCCeEEEEeCCCcEEEEeec
Q 038439 147 GSYFISAVCWKS-DSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 147 ~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~ 178 (179)
|..-|+.++|+| .|.+|++++.|++++||..+
T Consensus 386 H~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~ 418 (459)
T KOG0272|consen 386 HSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTR 418 (459)
T ss_pred ccchhhheEecccCCeEEEEcccCcceeeecCC
Confidence 388899999998 78999999999999999754
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=4.1e-35 Score=197.95 Aligned_cols=166 Identities=23% Similarity=0.283 Sum_probs=149.7
Q ss_pred CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCC-CCeEEEEe-----------CCCcee--eecccCceeEEEEeeC-
Q 038439 1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPG-SSNYIAKY-----------QSTAPC--VHGHKKAVSYVKFLSN- 64 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~-~~~~~~~~-----------~~~~~~--~~~~~~~i~~~~~~~~- 64 (179)
|.+|.++||+..+...++++. |.+.|.++.|+|. ...-++++ ....++ +.+|...|..++|+|+
T Consensus 194 swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG 273 (459)
T KOG0272|consen 194 SWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSG 273 (459)
T ss_pred ecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCC
Confidence 568999999999998888885 9999999999998 34445554 344566 8999999999999999
Q ss_pred CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcc
Q 038439 65 DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDE 144 (179)
Q Consensus 65 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 144 (179)
.+|+|+|.|.+-++||++++..+....+|...|.+++|.|||..+++|+.|..-+|||+++++.+..+.
T Consensus 274 ~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~----------- 342 (459)
T KOG0272|consen 274 KFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLA----------- 342 (459)
T ss_pred ceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEec-----------
Confidence 999999999999999999999999999999999999999999999999999999999999999987654
Q ss_pred cCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439 145 DAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 145 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
+ |...|..+.|+|+|..|++|+.|++++|||++
T Consensus 343 g-H~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR 375 (459)
T KOG0272|consen 343 G-HIKEILSVAFSPNGYHLATGSSDNTCKVWDLR 375 (459)
T ss_pred c-cccceeeEeECCCceEEeecCCCCcEEEeeec
Confidence 2 28899999999999999999999999999986
No 4
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=5.6e-33 Score=180.24 Aligned_cols=166 Identities=20% Similarity=0.311 Sum_probs=149.6
Q ss_pred CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe-----------CCC--c---ee---eecccCceeEEE
Q 038439 1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY-----------QST--A---PC---VHGHKKAVSYVK 60 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~-----------~~~--~---~~---~~~~~~~i~~~~ 60 (179)
|.||.+.|||..+...++.+. ....|..++|+|.| +++++| ... + ++ +.+|++-+.|..
T Consensus 74 SqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg-~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~ 152 (343)
T KOG0286|consen 74 SQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSG-NFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCR 152 (343)
T ss_pred ccCCeEEEEEcccccceeEEecCceeEEEEEECCCC-CeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEE
Confidence 579999999999999988888 45679999999999 677777 111 1 22 889999999999
Q ss_pred EeeCCeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEee-CCCEEEEeccCCcEEEEEcCCCccccccccCCCCC
Q 038439 61 FLSNDELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTV-NSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDM 139 (179)
Q Consensus 61 ~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~ 139 (179)
|.+++.|+|+|.|.+..+||+++++.+..|.+|.+.|.+++++| +++.|++|+-|+..++||+|.+..++.+.-
T Consensus 153 f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~g----- 227 (343)
T KOG0286|consen 153 FLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEG----- 227 (343)
T ss_pred EcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecc-----
Confidence 99999999999999999999999999999999999999999999 899999999999999999999988877652
Q ss_pred CCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439 140 DDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA 179 (179)
Q Consensus 140 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 179 (179)
| ...|++++|.|+|.-+++|++|+++++||++.
T Consensus 228 ------h-esDINsv~ffP~G~afatGSDD~tcRlyDlRa 260 (343)
T KOG0286|consen 228 ------H-ESDINSVRFFPSGDAFATGSDDATCRLYDLRA 260 (343)
T ss_pred ------c-ccccceEEEccCCCeeeecCCCceeEEEeecC
Confidence 2 78899999999999999999999999999974
No 5
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-32 Score=177.36 Aligned_cols=165 Identities=19% Similarity=0.310 Sum_probs=140.6
Q ss_pred CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEeCC---------Ccee--eec--ccCceeEEEEeeC--
Q 038439 1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKYQS---------TAPC--VHG--HKKAVSYVKFLSN-- 64 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~---------~~~~--~~~--~~~~i~~~~~~~~-- 64 (179)
|.|+++++||+.+++..+.|. |...|.+++|+|+..+++...+. +.+. +.. +.+.|+|++|+|+
T Consensus 82 swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~ 161 (315)
T KOG0279|consen 82 SWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNES 161 (315)
T ss_pred cccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCC
Confidence 579999999999998888885 88999999999999665555411 2222 222 3778999999998
Q ss_pred -CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCc
Q 038439 65 -DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTD 143 (179)
Q Consensus 65 -~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~ 143 (179)
..|++++.|++|++||+++.+....+.+|.+.++.++++|||..+++|+.||.+.+||++.++.+..+..
T Consensus 162 ~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a--------- 232 (315)
T KOG0279|consen 162 NPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEA--------- 232 (315)
T ss_pred CcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccC---------
Confidence 6899999999999999999999999999999999999999999999999999999999999998766553
Q ss_pred ccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439 144 EDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA 179 (179)
Q Consensus 144 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 179 (179)
...|.+++|+|+.-+|+.+... .|+|||+.+
T Consensus 233 ----~~~v~sl~fspnrywL~~at~~-sIkIwdl~~ 263 (315)
T KOG0279|consen 233 ----FDIVNSLCFSPNRYWLCAATAT-SIKIWDLES 263 (315)
T ss_pred ----CCeEeeEEecCCceeEeeccCC-ceEEEeccc
Confidence 6789999999988777766655 599999864
No 6
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.8e-33 Score=185.75 Aligned_cols=177 Identities=21% Similarity=0.288 Sum_probs=146.0
Q ss_pred CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe-----------CCCcee---eecccCceeEEEEeeC-
Q 038439 1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY-----------QSTAPC---VHGHKKAVSYVKFLSN- 64 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~---~~~~~~~i~~~~~~~~- 64 (179)
|-|.++++||+.+..+.++.. |+..|.|++|+|||. .+++| .+++++ +.+|.+.|++++|.|-
T Consensus 134 sGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk-~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~h 212 (480)
T KOG0271|consen 134 SGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGK-KIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLH 212 (480)
T ss_pred CCCceEEeeccCCCCcceeecCCccEEEEEEECCCcc-hhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccc
Confidence 458899999999999999886 899999999999994 55555 466777 9999999999999874
Q ss_pred -----CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCC--
Q 038439 65 -----DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSP-- 137 (179)
Q Consensus 65 -----~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~-- 137 (179)
++|++++.||.++|||+..++++..+.+|..+|+|+.|--+| +|++|+.|++|++|+...|.....+.-..+
T Consensus 213 l~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHahwv 291 (480)
T KOG0271|consen 213 LVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAHWV 291 (480)
T ss_pred cCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccchhe
Confidence 789999999999999999999999999999999999997555 899999999999999877654433221111
Q ss_pred -----------------------------------------------------------------CCCCCcccCCcceEE
Q 038439 138 -----------------------------------------------------------------DMDDTDEDAGSYFIS 152 (179)
Q Consensus 138 -----------------------------------------------------------------~~~~~~~~~~~~~i~ 152 (179)
.........|...|+
T Consensus 292 N~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn 371 (480)
T KOG0271|consen 292 NHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVN 371 (480)
T ss_pred eeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhhee
Confidence 001112223477899
Q ss_pred EEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439 153 AVCWKSDSPTMLTANSQGTIKVLVLAA 179 (179)
Q Consensus 153 ~~~~~~~~~~l~~~~~dg~i~iwd~~~ 179 (179)
.+.|+||++++++++.|..|++||-++
T Consensus 372 ~V~fSPd~r~IASaSFDkSVkLW~g~t 398 (480)
T KOG0271|consen 372 HVSFSPDGRYIASASFDKSVKLWDGRT 398 (480)
T ss_pred eEEECCCccEEEEeecccceeeeeCCC
Confidence 999999999999999999999999754
No 7
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1e-31 Score=180.12 Aligned_cols=162 Identities=23% Similarity=0.396 Sum_probs=143.4
Q ss_pred CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe-------------------------------------
Q 038439 1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY------------------------------------- 42 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~------------------------------------- 42 (179)
|.||+|+|||+..++++..+. |..+|+|++|--+| ++.+|
T Consensus 224 skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g--liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~ 301 (480)
T KOG0271|consen 224 SKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG--LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYV 301 (480)
T ss_pred cCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc--eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhh
Confidence 579999999999999888875 89999999998665 55554
Q ss_pred -----------------------------------------------------CCCcee--eecccCceeEEEEeeC-Ce
Q 038439 43 -----------------------------------------------------QSTAPC--VHGHKKAVSYVKFLSN-DE 66 (179)
Q Consensus 43 -----------------------------------------------------~~~~~~--~~~~~~~i~~~~~~~~-~~ 66 (179)
...+++ +.+|...|+.+.|+|| .+
T Consensus 302 LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~ 381 (480)
T KOG0271|consen 302 LRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRY 381 (480)
T ss_pred hhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccE
Confidence 233444 6789999999999999 99
Q ss_pred EEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccC
Q 038439 67 LASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDA 146 (179)
Q Consensus 67 l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 146 (179)
++++|.|+.|++||-++|+.+.+|++|-..|+.++|+.|.+++++|+.|.++++||+++.+....+. . |
T Consensus 382 IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLp--G---------h 450 (480)
T KOG0271|consen 382 IASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLP--G---------H 450 (480)
T ss_pred EEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCC--C---------C
Confidence 9999999999999999999999999999999999999999999999999999999999987765433 2 2
Q ss_pred CcceEEEEEEccCCCeEEEEeCCCcEEEEe
Q 038439 147 GSYFISAVCWKSDSPTMLTANSQGTIKVLV 176 (179)
Q Consensus 147 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd 176 (179)
...|.++.|+|||..+++|+.|..+++|.
T Consensus 451 -~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 451 -ADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred -CceEEEEEecCCCceeecCCCceEEEeec
Confidence 77899999999999999999999999994
No 8
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.98 E-value=1.9e-30 Score=165.41 Aligned_cols=177 Identities=18% Similarity=0.202 Sum_probs=143.5
Q ss_pred CCCccEEEEEcCCceeEEeecCC-CceeEEEEcCCCCeEEEEe-----------CCCcee--eecccCceeEEEEeeC-C
Q 038439 1 MAYGKVKVWCTRQEASVLNIDMK-ANICCVKYNPGSSNYIAKY-----------QSTAPC--VHGHKKAVSYVKFLSN-D 65 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~-----------~~~~~~--~~~~~~~i~~~~~~~~-~ 65 (179)
|.|.+|++|...+|.+..+++|. +.|+.+...|++..+.++| ....|+ +.+|++.|+.+.|..+ +
T Consensus 17 ~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgr 96 (311)
T KOG0315|consen 17 GYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGR 96 (311)
T ss_pred cCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCe
Confidence 67999999999999999999975 5799999999997666666 233355 9999999999999999 9
Q ss_pred eEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCC--------
Q 038439 66 ELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSP-------- 137 (179)
Q Consensus 66 ~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~-------- 137 (179)
.+++|++||+++|||++...+.+.++ +.++|+++..+|+...|++|..+|.|++||+.+.........+..
T Consensus 97 WMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v 175 (311)
T KOG0315|consen 97 WMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTV 175 (311)
T ss_pred EEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEE
Confidence 99999999999999999976666665 679999999999999999999999999999986532221111100
Q ss_pred -----------------------------CCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439 138 -----------------------------DMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 138 -----------------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
.........|...+..+.+||++++|++++.|.+++||+++
T Consensus 176 ~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~ 245 (311)
T KOG0315|consen 176 MPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTD 245 (311)
T ss_pred cCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecC
Confidence 01111122347788899999999999999999999999875
No 9
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.97 E-value=5.9e-30 Score=175.35 Aligned_cols=166 Identities=17% Similarity=0.296 Sum_probs=144.1
Q ss_pred CCCccEEEEEcCCceeEEee-cCCCceeEEEEcCCCCeEEEEe-------------------------------------
Q 038439 1 MAYGKVKVWCTRQEASVLNI-DMKANICCVKYNPGSSNYIAKY------------------------------------- 42 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~------------------------------------- 42 (179)
+.||.+++|+.. +.++.++ .|++||.++.|+..|.++++.+
T Consensus 254 ~~~G~~riw~~~-G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F 332 (524)
T KOG0273|consen 254 SEDGEARIWNKD-GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEF 332 (524)
T ss_pred ecCcEEEEEecC-chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceE
Confidence 368999999955 5556666 4999999999999997777776
Q ss_pred --------------CCCcee--eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeC
Q 038439 43 --------------QSTAPC--VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVN 105 (179)
Q Consensus 43 --------------~~~~~~--~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 105 (179)
...+|+ +.+|.++|.++.|.|. .+|+++|.|++++||..........+..|...|..+.|+|.
T Consensus 333 ~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~ 412 (524)
T KOG0273|consen 333 ATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPT 412 (524)
T ss_pred eecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCC
Confidence 233455 7889999999999999 99999999999999999988889999999999999999996
Q ss_pred ---------CCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEe
Q 038439 106 ---------SEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLV 176 (179)
Q Consensus 106 ---------~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd 176 (179)
+..+++++.|++|++||+..+.++..+. . |..+|++++|+|+|+++++|+.||.|++|+
T Consensus 413 g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~-----------k-H~~pVysvafS~~g~ylAsGs~dg~V~iws 480 (524)
T KOG0273|consen 413 GPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLM-----------K-HQEPVYSVAFSPNGRYLASGSLDGCVHIWS 480 (524)
T ss_pred CCccCCCcCCceEEEeecCCeEEEEEccCCceeEeec-----------c-CCCceEEEEecCCCcEEEecCCCCeeEecc
Confidence 4568999999999999999999987753 1 288999999999999999999999999999
Q ss_pred ecC
Q 038439 177 LAA 179 (179)
Q Consensus 177 ~~~ 179 (179)
+++
T Consensus 481 ~~~ 483 (524)
T KOG0273|consen 481 TKT 483 (524)
T ss_pred ccc
Confidence 763
No 10
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.97 E-value=3.9e-30 Score=185.06 Aligned_cols=147 Identities=24% Similarity=0.373 Sum_probs=133.7
Q ss_pred cCCCceeEEEEcCCCCeEEEEe----------CCCcee--eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCcce
Q 038439 21 DMKANICCVKYNPGSSNYIAKY----------QSTAPC--VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPV 87 (179)
Q Consensus 21 ~~~~~v~~~~~~~~~~~~~~~~----------~~~~~~--~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~ 87 (179)
.|.++|..+.|+|+.+.++.++ .+..++ +++|..+|+.+.|+|- -+|+|+|.|++.++|......++
T Consensus 449 GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~Pl 528 (707)
T KOG0263|consen 449 GHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPL 528 (707)
T ss_pred cCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCch
Confidence 5889999999999997777776 333444 8899999999999999 88999999999999999999999
Q ss_pred eeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEe
Q 038439 88 RTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTAN 167 (179)
Q Consensus 88 ~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 167 (179)
+.+.+|.+.|.|++|+|+..|+++|+.|.+|++||..+|..+..+. +| ..+|.+++|+|+|++|++|+
T Consensus 529 RifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~-----------GH-~~~V~al~~Sp~Gr~LaSg~ 596 (707)
T KOG0263|consen 529 RIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFT-----------GH-KGPVTALAFSPCGRYLASGD 596 (707)
T ss_pred hhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEec-----------CC-CCceEEEEEcCCCceEeecc
Confidence 9999999999999999999999999999999999999998876653 33 88999999999999999999
Q ss_pred CCCcEEEEeecC
Q 038439 168 SQGTIKVLVLAA 179 (179)
Q Consensus 168 ~dg~i~iwd~~~ 179 (179)
.||.|++||+.+
T Consensus 597 ed~~I~iWDl~~ 608 (707)
T KOG0263|consen 597 EDGLIKIWDLAN 608 (707)
T ss_pred cCCcEEEEEcCC
Confidence 999999999864
No 11
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=8e-29 Score=178.73 Aligned_cols=168 Identities=19% Similarity=0.333 Sum_probs=142.6
Q ss_pred CCCccEEEEEcCCce--eEEee-cCCCceeEEEEcCCCCeEEEEe-----------CCCcee--eecccCceeEEEEeeC
Q 038439 1 MAYGKVKVWCTRQEA--SVLNI-DMKANICCVKYNPGSSNYIAKY-----------QSTAPC--VHGHKKAVSYVKFLSN 64 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~--~~~~~-~~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~--~~~~~~~i~~~~~~~~ 64 (179)
+.|+.+++|+..+.+ .+..+ .|...|.+++|+|++..++.++ ..+..+ +.+|...|++++|+|+
T Consensus 178 ~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~ 257 (456)
T KOG0266|consen 178 SSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPD 257 (456)
T ss_pred cCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCC
Confidence 368999999997776 55555 5889999999999996444444 222344 8899999999999999
Q ss_pred -CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCcc--ccccccCCCCCCC
Q 038439 65 -DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKP--VTWHRFSSPDMDD 141 (179)
Q Consensus 65 -~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~--~~~~~~~~~~~~~ 141 (179)
+++++|+.|++|++||+++++++..+..|...|.+++|++++++|++++.|+.|++||+.++.. ........
T Consensus 258 g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~----- 332 (456)
T KOG0266|consen 258 GNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAE----- 332 (456)
T ss_pred CCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCC-----
Confidence 8999999999999999999999999999999999999999999999999999999999999883 33322111
Q ss_pred CcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439 142 TDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 142 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
... .++.++|+|++.++++++.|+.+++||++
T Consensus 333 ----~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~ 364 (456)
T KOG0266|consen 333 ----NSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLR 364 (456)
T ss_pred ----CCC-ceeEEEECCCCcEEEEecCCCeEEEEEcc
Confidence 003 79999999999999999999999999986
No 12
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=1.4e-28 Score=158.35 Aligned_cols=166 Identities=17% Similarity=0.312 Sum_probs=138.0
Q ss_pred CCCccEEEEEcCC---ceeEEeec--CCCceeEEEEcCCCCeEEEEe-------------CCCcee--eecccCceeEEE
Q 038439 1 MAYGKVKVWCTRQ---EASVLNID--MKANICCVKYNPGSSNYIAKY-------------QSTAPC--VHGHKKAVSYVK 60 (179)
Q Consensus 1 ~~d~~i~vwd~~~---~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~-------------~~~~~~--~~~~~~~i~~~~ 60 (179)
|.|+.|++|+... ..+...+. |+..|++++|+|.|+ +++++ ...+++ +.+|+..|.|++
T Consensus 34 g~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~-~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Va 112 (312)
T KOG0645|consen 34 GTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGR-YLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVA 112 (312)
T ss_pred cCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCc-EEEEeeccceEEEeecCCCceeEEeeeeccccceeEEE
Confidence 5799999999885 34444443 889999999999995 66665 233555 899999999999
Q ss_pred EeeC-CeEEEecCCCcEEEEecCCC---cceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCC-CccccccccC
Q 038439 61 FLSN-DELASASTDSTLRLWDVKEN---LPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEI-SKPVTWHRFS 135 (179)
Q Consensus 61 ~~~~-~~l~~~~~d~~v~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~-~~~~~~~~~~ 135 (179)
|+++ ++|++++.|+.|.||.+... ++...+..|.+.|..+.|+|...+|++++.|++|++|+-.. ..-.....+.
T Consensus 113 ws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~ 192 (312)
T KOG0645|consen 113 WSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLD 192 (312)
T ss_pred EcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEec
Confidence 9999 99999999999999998753 56677889999999999999999999999999999998873 3333333443
Q ss_pred CCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439 136 SPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVL 177 (179)
Q Consensus 136 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 177 (179)
.+ ...|++++|++.|..|++++.|++++||-+
T Consensus 193 g~----------~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~ 224 (312)
T KOG0645|consen 193 GH----------ENTVWSLAFDNIGSRLVSCSDDGTVSIWRL 224 (312)
T ss_pred Cc----------cceEEEEEecCCCceEEEecCCcceEeeee
Confidence 33 568999999999999999999999999974
No 13
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.2e-29 Score=178.01 Aligned_cols=166 Identities=19% Similarity=0.281 Sum_probs=149.9
Q ss_pred CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe-----------CCCcee--eecccCceeEEEEeeC--
Q 038439 1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY-----------QSTAPC--VHGHKKAVSYVKFLSN-- 64 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~--~~~~~~~i~~~~~~~~-- 64 (179)
|+|..|+||++++++.++.++ |.+-|++++.||..+.++.++ +.-.+. +.+|+.-|.+++|.|.
T Consensus 74 sDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ 153 (794)
T KOG0276|consen 74 SDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDP 153 (794)
T ss_pred cCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCc
Confidence 689999999999999999997 889999999999998888877 112222 8899999999999998
Q ss_pred CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCC--CEEEEeccCCcEEEEEcCCCccccccccCCCCCCCC
Q 038439 65 DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNS--EYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDT 142 (179)
Q Consensus 65 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~ 142 (179)
+.++++|.|++|++|.+.+..+..++++|...|+++.+-+-| .++++|+.|..++|||.++..++++++-
T Consensus 154 ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeG-------- 225 (794)
T KOG0276|consen 154 NTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEG-------- 225 (794)
T ss_pred cceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhc--------
Confidence 999999999999999999999999999999999999998854 5899999999999999999999987652
Q ss_pred cccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439 143 DEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 143 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
| ...|..++|+|.-..+++|+.||+++||+-.
T Consensus 226 ---H-t~Nvs~v~fhp~lpiiisgsEDGTvriWhs~ 257 (794)
T KOG0276|consen 226 ---H-TNNVSFVFFHPELPIIISGSEDGTVRIWNSK 257 (794)
T ss_pred ---c-cccceEEEecCCCcEEEEecCCccEEEecCc
Confidence 2 7789999999999999999999999999854
No 14
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.97 E-value=1.5e-28 Score=158.71 Aligned_cols=166 Identities=17% Similarity=0.182 Sum_probs=140.0
Q ss_pred CCCccEEEEEcCC-----ceeEEeec-CCCceeEEEEcCCCCeEEEEe----------CCCcee--eecccCceeEEEEe
Q 038439 1 MAYGKVKVWCTRQ-----EASVLNID-MKANICCVKYNPGSSNYIAKY----------QSTAPC--VHGHKKAVSYVKFL 62 (179)
Q Consensus 1 ~~d~~i~vwd~~~-----~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~----------~~~~~~--~~~~~~~i~~~~~~ 62 (179)
+.|.++.+|++.. |.+++.+. |...|..+..+++|+..++++ ..+++. +.+|...|.+++|+
T Consensus 35 srDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s 114 (315)
T KOG0279|consen 35 SRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFS 114 (315)
T ss_pred ccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEec
Confidence 4689999998754 55677775 788999999999997666666 344454 89999999999999
Q ss_pred eC-CeEEEecCCCcEEEEecCCCcceeeecCC--CCCeEEEEEeeC--CCEEEEeccCCcEEEEEcCCCccccccccCCC
Q 038439 63 SN-DELASASTDSTLRLWDVKENLPVRTFRGH--MNEKNFVGLTVN--SEYIACGSESNEVYVYHKEISKPVTWHRFSSP 137 (179)
Q Consensus 63 ~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~--~~~v~~~~~~~~--~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~ 137 (179)
++ +++++||.|.+|++|+.-. .+..++..+ ...|.++.|+|+ ..+|++++.|++|++||+++.+....+.-
T Consensus 115 ~dn~qivSGSrDkTiklwnt~g-~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~g--- 190 (315)
T KOG0279|consen 115 TDNRQIVSGSRDKTIKLWNTLG-VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIG--- 190 (315)
T ss_pred CCCceeecCCCcceeeeeeecc-cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhcccc---
Confidence 99 9999999999999999874 445555443 678999999998 67899999999999999998887665432
Q ss_pred CCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439 138 DMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA 179 (179)
Q Consensus 138 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 179 (179)
| .+.++.+.++|||...++|+.||.+.+||++.
T Consensus 191 --------h-~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~ 223 (315)
T KOG0279|consen 191 --------H-SGYVNTVTVSPDGSLCASGGKDGEAMLWDLNE 223 (315)
T ss_pred --------c-cccEEEEEECCCCCEEecCCCCceEEEEEccC
Confidence 2 78899999999999999999999999999973
No 15
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.97 E-value=1.7e-28 Score=159.53 Aligned_cols=165 Identities=17% Similarity=0.282 Sum_probs=144.3
Q ss_pred CCccEEEEEcCCc------eeEEee-cCCCceeEEEEcCCCCeEEEEe----------CCCcee--eecccCceeEEEEe
Q 038439 2 AYGKVKVWCTRQE------ASVLNI-DMKANICCVKYNPGSSNYIAKY----------QSTAPC--VHGHKKAVSYVKFL 62 (179)
Q Consensus 2 ~d~~i~vwd~~~~------~~~~~~-~~~~~v~~~~~~~~~~~~~~~~----------~~~~~~--~~~~~~~i~~~~~~ 62 (179)
=|+...||++.+. +..+++ .|.+-+.++.|-+|+ +++..+ .+++.+ +.+|.+.|.++.++
T Consensus 117 LdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~ 195 (343)
T KOG0286|consen 117 LDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLS 195 (343)
T ss_pred cCceeEEEecccccccccceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEEEecCCcccEEEEecC
Confidence 4788899998855 223334 388999999999987 555544 556666 99999999999999
Q ss_pred e-C-CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCC
Q 038439 63 S-N-DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMD 140 (179)
Q Consensus 63 ~-~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~ 140 (179)
| + +.+++|+-|+..++||++.+.++++|.+|.+.|+++.|.|+|.-|++|+.|++.++||+|..+.+..+.....
T Consensus 196 p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~--- 272 (343)
T KOG0286|consen 196 PSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSI--- 272 (343)
T ss_pred CCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcc---
Confidence 9 5 9999999999999999999999999999999999999999999999999999999999999988877764332
Q ss_pred CCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439 141 DTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVL 177 (179)
Q Consensus 141 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 177 (179)
..+|++++|+..|++|++|..|.++.+||.
T Consensus 273 -------~~gitSv~FS~SGRlLfagy~d~~c~vWDt 302 (343)
T KOG0286|consen 273 -------ICGITSVAFSKSGRLLFAGYDDFTCNVWDT 302 (343)
T ss_pred -------cCCceeEEEcccccEEEeeecCCceeEeec
Confidence 668999999999999999999999999995
No 16
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.8e-28 Score=163.39 Aligned_cols=165 Identities=19% Similarity=0.275 Sum_probs=147.4
Q ss_pred CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe-----------CCCcee--eecccCceeEEEEeeC--
Q 038439 1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY-----------QSTAPC--VHGHKKAVSYVKFLSN-- 64 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~--~~~~~~~i~~~~~~~~-- 64 (179)
|.|.+|+.|++.++.+++++. |...|..++.+.|| .+++++ .++++. +++|+.+|.|++|.|.
T Consensus 212 srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DG-ti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~ 290 (406)
T KOG0295|consen 212 SRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDG-TIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESS 290 (406)
T ss_pred ccccceeEEecccceeEEeccCchHhEEEEEecCCe-eEEEecCCCceEEEEEeccchhhhhhhccccceEEEEeccccc
Confidence 579999999999999999996 78899999999999 677766 334333 8889999999999763
Q ss_pred --------------CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCcccc
Q 038439 65 --------------DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVT 130 (179)
Q Consensus 65 --------------~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~ 130 (179)
..+.+++.|++|++||+.++.++.++.+|...|+.++|+|.|+||+++..|+++++||+++.++..
T Consensus 291 ~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk 370 (406)
T KOG0295|consen 291 YPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMK 370 (406)
T ss_pred CcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeee
Confidence 268899999999999999999999999999999999999999999999999999999999999887
Q ss_pred ccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439 131 WHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
.++. + ...++++.|+.+..++++|+-|-.+++|..+
T Consensus 371 ~~~a--h----------~hfvt~lDfh~~~p~VvTGsVdqt~KvwEcr 406 (406)
T KOG0295|consen 371 TLEA--H----------EHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 406 (406)
T ss_pred ccCC--C----------cceeEEEecCCCCceEEeccccceeeeeecC
Confidence 7653 2 7789999999999999999999999999753
No 17
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.97 E-value=2.2e-28 Score=156.00 Aligned_cols=168 Identities=18% Similarity=0.264 Sum_probs=141.5
Q ss_pred CCCccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEeCCCcee-------------eecccCceeEEEEeeC-Ce
Q 038439 1 MAYGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKYQSTAPC-------------VHGHKKAVSYVKFLSN-DE 66 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~i~~~~~~~~-~~ 66 (179)
|+||+++|||++...+.+.+++.++|+++..+|+...|+++.+.+..- +..-...|.++...|+ ..
T Consensus 102 seDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsm 181 (311)
T KOG0315|consen 102 SEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSM 181 (311)
T ss_pred CCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcE
Confidence 689999999999999999999999999999999987777765322211 3444568999999999 89
Q ss_pred EEEecCCCcEEEEecCCC------cceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCC
Q 038439 67 LASASTDSTLRLWDVKEN------LPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMD 140 (179)
Q Consensus 67 l~~~~~d~~v~iwd~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~ 140 (179)
++.+...|...+|++... +++..++.|..-+..+.++|++++|++++.|.+++||+.++. ......+..+
T Consensus 182 l~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~-~kle~~l~gh--- 257 (311)
T KOG0315|consen 182 LAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF-FKLELVLTGH--- 257 (311)
T ss_pred EEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc-eeeEEEeecC---
Confidence 999999999999998653 456678889999999999999999999999999999999887 3333333322
Q ss_pred CCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439 141 DTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA 179 (179)
Q Consensus 141 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 179 (179)
...++..+||.+|+||++++.|+.+++|++++
T Consensus 258 -------~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~ 289 (311)
T KOG0315|consen 258 -------QRWVWDCAFSADGEYLVTASSDHTARLWDLSA 289 (311)
T ss_pred -------CceEEeeeeccCccEEEecCCCCceeeccccc
Confidence 67999999999999999999999999999863
No 18
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.96 E-value=2.9e-29 Score=169.33 Aligned_cols=164 Identities=18% Similarity=0.267 Sum_probs=137.3
Q ss_pred CCccEEEEEcCCceeEEee-cCCCceeEEEEcCCCCeEEEEeCCCcee------------eec-ccCceeEEEEeeC-Ce
Q 038439 2 AYGKVKVWCTRQEASVLNI-DMKANICCVKYNPGSSNYIAKYQSTAPC------------VHG-HKKAVSYVKFLSN-DE 66 (179)
Q Consensus 2 ~d~~i~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~------------~~~-~~~~i~~~~~~~~-~~ 66 (179)
+-|...||+..+..-...+ .|.++|+++.|++++. .+++|+.+..+ +.+ |...|.+++|+|+ ..
T Consensus 116 ~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~-wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDsk 194 (464)
T KOG0284|consen 116 QSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGT-WMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSK 194 (464)
T ss_pred ccccEEEecCceeeHHHHhhhhcccceeEEEccCCC-EEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCCCCce
Confidence 4577788886433222222 3899999999999994 55555222222 344 4589999999999 99
Q ss_pred EEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccC
Q 038439 67 LASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDA 146 (179)
Q Consensus 67 l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 146 (179)
|+++|.|++|+|||....+....+.+|.-.|.+++|+|.-.++++|+.|..|++||.+++.++.++..
T Consensus 195 F~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~------------ 262 (464)
T KOG0284|consen 195 FLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHG------------ 262 (464)
T ss_pred eEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhh------------
Confidence 99999999999999999888888899999999999999999999999999999999999999877542
Q ss_pred CcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439 147 GSYFISAVCWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 147 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
|+..|..+.|+|++++|++++.|..+++||++
T Consensus 263 HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR 294 (464)
T KOG0284|consen 263 HKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIR 294 (464)
T ss_pred ccceEEEEEEcCCCCeeEEccCCceEEEEehh
Confidence 28889999999999999999999999999987
No 19
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=2.7e-28 Score=156.96 Aligned_cols=176 Identities=12% Similarity=0.182 Sum_probs=147.7
Q ss_pred CCCccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe----------------------CCCcee--eecccCce
Q 038439 1 MAYGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY----------------------QSTAPC--VHGHKKAV 56 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----------------------~~~~~~--~~~~~~~i 56 (179)
|.|.+++|||+++|+++..+..+.+|..+.|+++|..++++. ...+|+ +..+...+
T Consensus 71 SAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~ski 150 (327)
T KOG0643|consen 71 SADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKI 150 (327)
T ss_pred cccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccce
Confidence 579999999999999999999999999999999997766665 133444 67778889
Q ss_pred eEEEEeeC-CeEEEecCCCcEEEEecCCCc-ceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCcccccccc
Q 038439 57 SYVKFLSN-DELASASTDSTLRLWDVKENL-PVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRF 134 (179)
Q Consensus 57 ~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~ 134 (179)
+.+-|.|- ..|++|..||.|.+||+++++ .+..-+.|...|+.+.++||..++++++.|.+-++||.++-+.+..+..
T Consensus 151 t~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t 230 (327)
T KOG0643|consen 151 TSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTT 230 (327)
T ss_pred eeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeee
Confidence 99999999 999999999999999999974 4455677999999999999999999999999999999998776666543
Q ss_pred CCC--------------------------------------------CCCCCcccCCcceEEEEEEccCCCeEEEEeCCC
Q 038439 135 SSP--------------------------------------------DMDDTDEDAGSYFISAVCWKSDSPTMLTANSQG 170 (179)
Q Consensus 135 ~~~--------------------------------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 170 (179)
..+ +......+ |-++|++++|+|+|+..++|+.||
T Consensus 231 e~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkG-HFGPINsvAfhPdGksYsSGGEDG 309 (327)
T KOG0643|consen 231 ERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKG-HFGPINSVAFHPDGKSYSSGGEDG 309 (327)
T ss_pred cccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccc-cccCcceeEECCCCcccccCCCCc
Confidence 333 01111233 488999999999999999999999
Q ss_pred cEEEEee
Q 038439 171 TIKVLVL 177 (179)
Q Consensus 171 ~i~iwd~ 177 (179)
.|++.-.
T Consensus 310 ~VR~h~F 316 (327)
T KOG0643|consen 310 YVRLHHF 316 (327)
T ss_pred eEEEEEe
Confidence 9998754
No 20
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.96 E-value=2.7e-28 Score=162.74 Aligned_cols=165 Identities=19% Similarity=0.275 Sum_probs=147.4
Q ss_pred CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe----------CCCcee--eecccCceeEEEEeeC-Ce
Q 038439 1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY----------QSTAPC--VHGHKKAVSYVKFLSN-DE 66 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~----------~~~~~~--~~~~~~~i~~~~~~~~-~~ 66 (179)
|.|++|+|||+.++++..++. |...|..+++|+-.++++.+| ...+.+ +.+|-..|.|++.+|. ..
T Consensus 170 s~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldv 249 (460)
T KOG0285|consen 170 SADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDV 249 (460)
T ss_pred CCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEecccccee
Confidence 579999999999999999887 889999999999999999998 223333 7789999999999999 99
Q ss_pred EEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccC
Q 038439 67 LASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDA 146 (179)
Q Consensus 67 l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 146 (179)
|++|+.|.++|+||+++...+..+.+|...|..+.+.|-...+++|+.|++|++||++.++-......
T Consensus 250 l~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~------------ 317 (460)
T KOG0285|consen 250 LVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTH------------ 317 (460)
T ss_pred EEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeec------------
Confidence 99999999999999999999999999999999999999888899999999999999999987765432
Q ss_pred CcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439 147 GSYFISAVCWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 147 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
|...+.+++.+|....+++++.|. |+-|++.
T Consensus 318 hkksvral~lhP~e~~fASas~dn-ik~w~~p 348 (460)
T KOG0285|consen 318 HKKSVRALCLHPKENLFASASPDN-IKQWKLP 348 (460)
T ss_pred ccceeeEEecCCchhhhhccCCcc-ceeccCC
Confidence 377899999999999999999884 8888764
No 21
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.96 E-value=1.3e-27 Score=165.93 Aligned_cols=168 Identities=24% Similarity=0.353 Sum_probs=145.5
Q ss_pred CccEEEEEcCCceeEE--eec-CCCceeEEEEcCCCCeEEEEe------------CCCcee--eecccCceeEEEEeeC-
Q 038439 3 YGKVKVWCTRQEASVL--NID-MKANICCVKYNPGSSNYIAKY------------QSTAPC--VHGHKKAVSYVKFLSN- 64 (179)
Q Consensus 3 d~~i~vwd~~~~~~~~--~~~-~~~~v~~~~~~~~~~~~~~~~------------~~~~~~--~~~~~~~i~~~~~~~~- 64 (179)
.|+|+|||....+.+. +++ ..++|..++|++++++++++| +++..+ +.+|...|+++.|-|.
T Consensus 80 sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsR 159 (603)
T KOG0318|consen 80 SGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSR 159 (603)
T ss_pred cCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCccceeeccceeEeeeeccCCC
Confidence 4899999987644333 333 568999999999999999999 455555 8899999999999999
Q ss_pred -CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCc
Q 038439 65 -DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTD 143 (179)
Q Consensus 65 -~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~ 143 (179)
=.++|+++|.+|.+|+=...+-..++..|...|+++.|+|||.+|++.+.||++.+||-.+++.+..+.-.
T Consensus 160 PfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~-------- 231 (603)
T KOG0318|consen 160 PFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDS-------- 231 (603)
T ss_pred ceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCC--------
Confidence 56899999999999997777777788889999999999999999999999999999999999988776531
Q ss_pred ccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439 144 EDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA 179 (179)
Q Consensus 144 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 179 (179)
..|.+.|..++|+||+..+++++.|.+++|||+.+
T Consensus 232 -~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~ 266 (603)
T KOG0318|consen 232 -DAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVST 266 (603)
T ss_pred -CCccccEEEEEECCCCceEEEecCCceEEEEEeec
Confidence 33488999999999999999999999999999864
No 22
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.96 E-value=3.1e-27 Score=162.14 Aligned_cols=165 Identities=25% Similarity=0.362 Sum_probs=146.0
Q ss_pred CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe----------CCCcee--eecccCceeEEEEeeC---
Q 038439 1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY----------QSTAPC--VHGHKKAVSYVKFLSN--- 64 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~----------~~~~~~--~~~~~~~i~~~~~~~~--- 64 (179)
+.|+.|+|+.+....++.++. |.++|.++.|+|.+..|+.++ ...... +.+|...|..+.|+|+
T Consensus 336 ~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v 415 (524)
T KOG0273|consen 336 STDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPV 415 (524)
T ss_pred CCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCc
Confidence 468999999999888888875 899999999999995555554 122222 8889999999999986
Q ss_pred -------CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCC
Q 038439 65 -------DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSP 137 (179)
Q Consensus 65 -------~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~ 137 (179)
..+++++.|++|++||+..+.++..|..|..+|++++|+|+|+++++|+.||.|.+|+.++++.++.+.-
T Consensus 416 ~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~--- 492 (524)
T KOG0273|consen 416 TSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG--- 492 (524)
T ss_pred cCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC---
Confidence 2589999999999999999999999999999999999999999999999999999999999999887764
Q ss_pred CCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439 138 DMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 138 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
...|..++|+.+|++|..+-.|+.+++.|++
T Consensus 493 ----------~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 493 ----------TGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred ----------CCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 5679999999999999999999999999986
No 23
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=9.6e-28 Score=172.07 Aligned_cols=163 Identities=19% Similarity=0.250 Sum_probs=143.0
Q ss_pred CCCccEEEEEcCCce-----eEEe-----ecCCCceeEEEEcCCCCeEEEEe-----------CCCcee--eecccCcee
Q 038439 1 MAYGKVKVWCTRQEA-----SVLN-----IDMKANICCVKYNPGSSNYIAKY-----------QSTAPC--VHGHKKAVS 57 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~-----~~~~-----~~~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~--~~~~~~~i~ 57 (179)
|.|+++++|++...+ .... ..|...|++++++|+. .++++| ...+.+ +.+|+..|.
T Consensus 431 S~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~nd-kLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw 509 (775)
T KOG0319|consen 431 SQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPND-KLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVW 509 (775)
T ss_pred cCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCC-ceEEecccccceeeecccCceEEEEeeCCccceE
Confidence 689999999987622 1111 1388999999999998 788887 222223 899999999
Q ss_pred EEEEeeC-CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCC
Q 038439 58 YVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSS 136 (179)
Q Consensus 58 ~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~ 136 (179)
|+.|+|. ..++|+|.|++|+||.+.+..++.++.+|...|..+.|-.+|+.|++++.||.+++|++++++++.++..
T Consensus 510 ~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~-- 587 (775)
T KOG0319|consen 510 CVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDA-- 587 (775)
T ss_pred EEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhh--
Confidence 9999999 9999999999999999999999999999999999999999999999999999999999999999877542
Q ss_pred CCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEe
Q 038439 137 PDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLV 176 (179)
Q Consensus 137 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd 176 (179)
|...|++++-+|...++++|+.||.|.+|.
T Consensus 588 ----------H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 588 ----------HNDRVWALSVSPLLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred ----------ccceeEEEeecCccceeEecCCCeEEEEee
Confidence 288999999999999999999999999995
No 24
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=4.1e-27 Score=169.52 Aligned_cols=174 Identities=13% Similarity=0.226 Sum_probs=146.8
Q ss_pred CccEEEEEcCCceeEEeecC-CCceeEEEEcCCCCeEEEEe-----------CCCcee--eecccCceeEEEEeeC-CeE
Q 038439 3 YGKVKVWCTRQEASVLNIDM-KANICCVKYNPGSSNYIAKY-----------QSTAPC--VHGHKKAVSYVKFLSN-DEL 67 (179)
Q Consensus 3 d~~i~vwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~-----------~~~~~~--~~~~~~~i~~~~~~~~-~~l 67 (179)
.|...+|.+....+++.+.. ..+|..++|+..|+.+...+ .....+ .++|...+++++++|| +++
T Consensus 286 sG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~i 365 (893)
T KOG0291|consen 286 SGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLI 365 (893)
T ss_pred CCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEE
Confidence 46677899999999998884 58899999999995444443 233333 6789999999999999 999
Q ss_pred EEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCC----------
Q 038439 68 ASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSP---------- 137 (179)
Q Consensus 68 ~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~---------- 137 (179)
++|+.|+.|+|||.+++-+..+|..|++.|+.+.|+..|+.+++.+.||+|+.||+...+...++..+.+
T Consensus 366 aTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~ 445 (893)
T KOG0291|consen 366 ATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDP 445 (893)
T ss_pred EeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcC
Confidence 9999999999999999999999999999999999999999999999999999999987766555543333
Q ss_pred -----------------------CCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439 138 -----------------------DMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVL 177 (179)
Q Consensus 138 -----------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 177 (179)
.......+| +++|.+++|+|.++.|++++.|.+|++||+
T Consensus 446 sGelV~AG~~d~F~IfvWS~qTGqllDiLsGH-EgPVs~l~f~~~~~~LaS~SWDkTVRiW~i 507 (893)
T KOG0291|consen 446 SGELVCAGAQDSFEIFVWSVQTGQLLDILSGH-EGPVSGLSFSPDGSLLASGSWDKTVRIWDI 507 (893)
T ss_pred CCCEEEeeccceEEEEEEEeecCeeeehhcCC-CCcceeeEEccccCeEEeccccceEEEEEe
Confidence 122233455 899999999999999999999999999996
No 25
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=3.7e-27 Score=169.76 Aligned_cols=178 Identities=19% Similarity=0.298 Sum_probs=143.6
Q ss_pred CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe-------------------------------------
Q 038439 1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY------------------------------------- 42 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~------------------------------------- 42 (179)
++||+|+|||..++-|..++. |++.|+.+.|+..+..++.++
T Consensus 369 ~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGe 448 (893)
T KOG0291|consen 369 AEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGE 448 (893)
T ss_pred cCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCC
Confidence 579999999999999999995 899999999999986666665
Q ss_pred -----------------CCCcee--eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCCC-cceeeecCCCCCeEEEE
Q 038439 43 -----------------QSTAPC--VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKEN-LPVRTFRGHMNEKNFVG 101 (179)
Q Consensus 43 -----------------~~~~~~--~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~-~~~~~~~~~~~~v~~~~ 101 (179)
.+++.+ +.+|+++|.++.|+|. ..|+++|.|.+||+||+-.. ..+.++. +.+.+..++
T Consensus 449 lV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vs 527 (893)
T KOG0291|consen 449 LVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVS 527 (893)
T ss_pred EEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEe-eccceeEEE
Confidence 667777 8999999999999999 99999999999999998654 3445554 577889999
Q ss_pred EeeCCCEEEEeccCCcEEEEEcCCCccccccccCCC--------CCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEE
Q 038439 102 LTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSP--------DMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIK 173 (179)
Q Consensus 102 ~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 173 (179)
|+|+|+.++++..||+|.+||.+.+.....+.-... +.............+.+++++||..+++|+..+.|+
T Consensus 528 frPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iC 607 (893)
T KOG0291|consen 528 FRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSIC 607 (893)
T ss_pred EcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEE
Confidence 999999999999999999999987655433321110 001111111145789999999999999999999999
Q ss_pred EEeecC
Q 038439 174 VLVLAA 179 (179)
Q Consensus 174 iwd~~~ 179 (179)
+|++++
T Consensus 608 iY~v~~ 613 (893)
T KOG0291|consen 608 IYDVPE 613 (893)
T ss_pred EEECch
Confidence 999864
No 26
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=1.1e-26 Score=167.78 Aligned_cols=169 Identities=17% Similarity=0.274 Sum_probs=141.1
Q ss_pred CCCccEEEEEc-CCceeEEeec-CCCceeEEEEcCCCCeEEEEe-----------CCCcee--eecccCceeEEEEeeC-
Q 038439 1 MAYGKVKVWCT-RQEASVLNID-MKANICCVKYNPGSSNYIAKY-----------QSTAPC--VHGHKKAVSYVKFLSN- 64 (179)
Q Consensus 1 ~~d~~i~vwd~-~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~--~~~~~~~i~~~~~~~~- 64 (179)
+.|++|+|||+ ..+..++++. |...|++++|+|++ +++++| +.++++ +.+|...|++++|+++
T Consensus 222 s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~ 300 (456)
T KOG0266|consen 222 SDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDG 300 (456)
T ss_pred cCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCC
Confidence 57999999999 4557888885 99999999999999 666666 456666 9999999999999999
Q ss_pred CeEEEecCCCcEEEEecCCCc--ceeeecCCCCC--eEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCC
Q 038439 65 DELASASTDSTLRLWDVKENL--PVRTFRGHMNE--KNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMD 140 (179)
Q Consensus 65 ~~l~~~~~d~~v~iwd~~~~~--~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~ 140 (179)
++|++++.|+.|++||+.++. ++..+..+... +.++.|+|++.+++++..|+.+++||++.+.....+......
T Consensus 301 ~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~-- 378 (456)
T KOG0266|consen 301 NLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNL-- 378 (456)
T ss_pred CEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCc--
Confidence 999999999999999999988 45666665544 899999999999999999999999999988877665432110
Q ss_pred CCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439 141 DTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA 179 (179)
Q Consensus 141 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 179 (179)
...+.+...++.+.++++|+.|+.|++||+.+
T Consensus 379 -------~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s 410 (456)
T KOG0266|consen 379 -------VRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSS 410 (456)
T ss_pred -------ceeEecccccCCCCeEEEEeCCceEEEEeCCc
Confidence 12455566688999999999999999999864
No 27
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=9.2e-28 Score=160.07 Aligned_cols=179 Identities=18% Similarity=0.224 Sum_probs=146.3
Q ss_pred CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEeCC-----------Ccee--eecccCceeEEEEeeC-C
Q 038439 1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKYQS-----------TAPC--VHGHKKAVSYVKFLSN-D 65 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~-----------~~~~--~~~~~~~i~~~~~~~~-~ 65 (179)
++|++|++||+.+++++..+. |...+.+++|+..|..++.+..+ .+++ +.+|...|.++.|-|. .
T Consensus 127 s~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd 206 (406)
T KOG0295|consen 127 SEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGD 206 (406)
T ss_pred cCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCC
Confidence 479999999999999988886 88889999999999555555411 2233 6789999999999999 9
Q ss_pred eEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCC--------
Q 038439 66 ELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSP-------- 137 (179)
Q Consensus 66 ~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~-------- 137 (179)
++++++.|.+|+.|++.++.++.++.+|...|+.++.+.||.++++++.|..|++|-+.++++...++.-.+
T Consensus 207 ~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wa 286 (406)
T KOG0295|consen 207 HILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWA 286 (406)
T ss_pred eeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEec
Confidence 999999999999999999999999999999999999999999999999999999999888754333321111
Q ss_pred -------------------------------------CCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439 138 -------------------------------------DMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA 179 (179)
Q Consensus 138 -------------------------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 179 (179)
.........|...|..++|+|.|+||+++.+|+++++||+++
T Consensus 287 p~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~ 365 (406)
T KOG0295|consen 287 PESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKN 365 (406)
T ss_pred ccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEecc
Confidence 000001122378899999999999999999999999999874
No 28
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.96 E-value=4.6e-28 Score=163.62 Aligned_cols=164 Identities=20% Similarity=0.278 Sum_probs=143.7
Q ss_pred CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe-----------CCCcee--eecccCceeEEEEeeC-C
Q 038439 1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY-----------QSTAPC--VHGHKKAVSYVKFLSN-D 65 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~--~~~~~~~i~~~~~~~~-~ 65 (179)
|+||+|+|||....+....+. |.-.|.+++|+|... ++++| +++.++ +.+|+..|..+.|+|+ +
T Consensus 199 SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kg-LiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N 277 (464)
T KOG0284|consen 199 SDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKG-LIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGN 277 (464)
T ss_pred cCCCeEEEEeccCCchhheeccCCCCcceeccCCccc-eeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCC
Confidence 689999999998877666665 778899999999984 55555 667777 8899999999999999 9
Q ss_pred eEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeC-CCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcc
Q 038439 66 ELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVN-SEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDE 144 (179)
Q Consensus 66 ~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 144 (179)
+|+++|.|..++++|+++-+.+..+++|...++++.|+|- ..+|.+|+.||.|..|.+...+++.....
T Consensus 278 ~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~---------- 347 (464)
T KOG0284|consen 278 WLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPP---------- 347 (464)
T ss_pred eeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCc----------
Confidence 9999999999999999988889999999999999999994 66788999999999999986666655442
Q ss_pred cCCcceEEEEEEccCCCeEEEEeCCCcEEEEe
Q 038439 145 DAGSYFISAVCWKSDSPTMLTANSQGTIKVLV 176 (179)
Q Consensus 145 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd 176 (179)
.|...|++++|+|-|..|++|+.|.++++|.
T Consensus 348 -AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 348 -AHDGEIWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred -ccccceeeeeccccceeEeecCCCcceeeec
Confidence 3378999999999999999999999999996
No 29
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=6.1e-26 Score=163.99 Aligned_cols=168 Identities=13% Similarity=0.246 Sum_probs=130.1
Q ss_pred CCCccEEEEEcCCce-------eEEeec-CCCceeEEEEcCCCCeEEEEe-----------CCCcee--eecccCceeEE
Q 038439 1 MAYGKVKVWCTRQEA-------SVLNID-MKANICCVKYNPGSSNYIAKY-----------QSTAPC--VHGHKKAVSYV 59 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~-------~~~~~~-~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~--~~~~~~~i~~~ 59 (179)
|.|++|++||+.++. ++..+. |...|.+++|+|++..+++++ ..++.+ +.+|...|.++
T Consensus 95 S~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sl 174 (493)
T PTZ00421 95 SEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSL 174 (493)
T ss_pred eCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEE
Confidence 579999999997652 344554 888999999999875566555 334444 77899999999
Q ss_pred EEeeC-CeEEEecCCCcEEEEecCCCcceeeecCCCCC-eEEEEEeeCCCEEEEec----cCCcEEEEEcCCCcc-cccc
Q 038439 60 KFLSN-DELASASTDSTLRLWDVKENLPVRTFRGHMNE-KNFVGLTVNSEYIACGS----ESNEVYVYHKEISKP-VTWH 132 (179)
Q Consensus 60 ~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~----~d~~v~vwd~~~~~~-~~~~ 132 (179)
+|+|+ .+|++++.|+.|++||+++++.+..+..|.+. ...+.|.+++..+++++ .|+.|++||+++... ....
T Consensus 175 a~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~ 254 (493)
T PTZ00421 175 EWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTV 254 (493)
T ss_pred EEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEe
Confidence 99999 89999999999999999999988888888764 34677888877777654 479999999987543 2222
Q ss_pred ccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeC-CCcEEEEeecC
Q 038439 133 RFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANS-QGTIKVLVLAA 179 (179)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~~ 179 (179)
... ....+....|++++++|++++. |+.|++||+++
T Consensus 255 ~~d-----------~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~ 291 (493)
T PTZ00421 255 DLD-----------QSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMN 291 (493)
T ss_pred ccC-----------CCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeC
Confidence 111 1345666789999999998874 99999999863
No 30
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.95 E-value=2.8e-27 Score=162.60 Aligned_cols=164 Identities=20% Similarity=0.325 Sum_probs=136.7
Q ss_pred CCCccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe-----------CCCcee--eecccCceeEEEEeeC-Ce
Q 038439 1 MAYGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY-----------QSTAPC--VHGHKKAVSYVKFLSN-DE 66 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~--~~~~~~~i~~~~~~~~-~~ 66 (179)
|.|+.|++||+++|+++..+.....++++.|+|++++++.+| ++++.+ +..|-+.|..+.|.++ ..
T Consensus 277 sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~r 356 (503)
T KOG0282|consen 277 SFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRR 356 (503)
T ss_pred ecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCce
Confidence 569999999999999999999999999999999997787777 444544 7778999999999999 99
Q ss_pred EEEecCCCcEEEEecCCCcce----------------------------------------------eeecCCC--CCeE
Q 038439 67 LASASTDSTLRLWDVKENLPV----------------------------------------------RTFRGHM--NEKN 98 (179)
Q Consensus 67 l~~~~~d~~v~iwd~~~~~~~----------------------------------------------~~~~~~~--~~v~ 98 (179)
+++++.|+.++||+.+..-++ ..+++|. +--.
T Consensus 357 FissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~ 436 (503)
T KOG0282|consen 357 FISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSC 436 (503)
T ss_pred EeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCcee
Confidence 999999999999998764111 1122332 2234
Q ss_pred EEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccC-CCeEEEEeCCCcEEEEe
Q 038439 99 FVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSD-SPTMLTANSQGTIKVLV 176 (179)
Q Consensus 99 ~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~iwd 176 (179)
.+.|||||++|++|..||.+.+||.++.+.+..+.. |...+..+.|+|. .+.+++++.||.|++||
T Consensus 437 ~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lka------------h~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 437 QVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKA------------HDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred eEEEcCCCCeEEeecCCccEEEeechhhhhhhcccc------------CCcceEEEEecCCCcceeEecccCceeEecC
Confidence 588999999999999999999999999888776553 2678999999994 46799999999999996
No 31
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.95 E-value=4.3e-28 Score=161.53 Aligned_cols=160 Identities=20% Similarity=0.340 Sum_probs=136.7
Q ss_pred CCCccEEEEEcCCceeEEee-cCCCceeEEEEcCCCCeEEEEe--------C----CCcee---eecccCceeEEEEeeC
Q 038439 1 MAYGKVKVWCTRQEASVLNI-DMKANICCVKYNPGSSNYIAKY--------Q----STAPC---VHGHKKAVSYVKFLSN 64 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~--------~----~~~~~---~~~~~~~i~~~~~~~~ 64 (179)
|.|.+|+|||++++++++++ .|.+.|..+.|+.. .++.++ + +...+ +.+|.+.|+.+.|+.
T Consensus 254 SSDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng--~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~- 330 (499)
T KOG0281|consen 254 SSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNG--YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD- 330 (499)
T ss_pred CCCceEEEEeccCCchhhHHhhhcceeEEEEEeCC--EEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc-
Confidence 57999999999999999887 57889999999863 455554 1 11111 789999999999865
Q ss_pred CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcc
Q 038439 65 DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDE 144 (179)
Q Consensus 65 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 144 (179)
.+++++|.|.+|++|+..+++.++++.+|...|.|+.+ .++++++|+.|.+|++||++.|.++..++
T Consensus 331 kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLe----------- 397 (499)
T KOG0281|consen 331 KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLE----------- 397 (499)
T ss_pred ceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHh-----------
Confidence 69999999999999999999999999999999988887 68999999999999999999999887754
Q ss_pred cCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439 145 DAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA 179 (179)
Q Consensus 145 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 179 (179)
+| +.-|.++.| +.+.+++|..||+|+|||+.+
T Consensus 398 GH-EeLvRciRF--d~krIVSGaYDGkikvWdl~a 429 (499)
T KOG0281|consen 398 GH-EELVRCIRF--DNKRIVSGAYDGKIKVWDLQA 429 (499)
T ss_pred ch-HHhhhheee--cCceeeeccccceEEEEeccc
Confidence 22 778999999 567899999999999999863
No 32
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=1e-25 Score=164.07 Aligned_cols=169 Identities=14% Similarity=0.205 Sum_probs=128.9
Q ss_pred CCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe-----------CCC--------cee--eecccCceeEE
Q 038439 2 AYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY-----------QST--------APC--VHGHKKAVSYV 59 (179)
Q Consensus 2 ~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~-----------~~~--------~~~--~~~~~~~i~~~ 59 (179)
.++.|++|+......+..+. |.++|.+++|+|+...++++| ..+ .++ +.+|...|.++
T Consensus 52 ~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sV 131 (568)
T PTZ00420 52 LIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISII 131 (568)
T ss_pred ceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEE
Confidence 46788999887766666665 889999999999744555555 111 122 67899999999
Q ss_pred EEeeC-C-eEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCC
Q 038439 60 KFLSN-D-ELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSP 137 (179)
Q Consensus 60 ~~~~~-~-~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~ 137 (179)
+|+|+ . .+++++.|+.|++||+++++.+..+. +...|.+++|+|+|.+|++++.|+.|++||+++++.+..+.. |
T Consensus 132 af~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~g--H 208 (568)
T PTZ00420 132 DWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHI--H 208 (568)
T ss_pred EECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEec--c
Confidence 99998 4 46789999999999999988777775 567899999999999999999999999999999887755432 2
Q ss_pred CCCCCcccCCcceEEEEEEccCCCeEEEEeCCC----cEEEEeec
Q 038439 138 DMDDTDEDAGSYFISAVCWKSDSPTMLTANSQG----TIKVLVLA 178 (179)
Q Consensus 138 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg----~i~iwd~~ 178 (179)
... .....++...|++++.+|++++.|+ .|+|||++
T Consensus 209 ~g~-----~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr 248 (568)
T PTZ00420 209 DGG-----KNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLK 248 (568)
T ss_pred cCC-----ceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECC
Confidence 100 0011233345678999999988774 79999987
No 33
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.95 E-value=3.8e-27 Score=150.65 Aligned_cols=175 Identities=15% Similarity=0.228 Sum_probs=136.9
Q ss_pred CCccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe-----------CCCcee--eecccCceeEEEEeeC-CeE
Q 038439 2 AYGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY-----------QSTAPC--VHGHKKAVSYVKFLSN-DEL 67 (179)
Q Consensus 2 ~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~--~~~~~~~i~~~~~~~~-~~l 67 (179)
.|=+-+|||.-++..+..++|+.-|.+++|+.|..+++..| +...+. +.+|.+.|..+.|... ..+
T Consensus 79 adftakvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~i 158 (334)
T KOG0278|consen 79 ADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCI 158 (334)
T ss_pred ccchhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceE
Confidence 46678999999999999999999999999999997777776 222222 8899999999999888 899
Q ss_pred EEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCC----------
Q 038439 68 ASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSP---------- 137 (179)
Q Consensus 68 ~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~---------- 137 (179)
++++.|++||+||.++++.++++. ..+.|.++.++++|+++.++. .+.|++||..+..++..+.....
T Consensus 159 LSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~-gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k 236 (334)
T KOG0278|consen 159 LSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAY-GSSVKFWDAKSFGLLKSYKMPCNVESASLHPKK 236 (334)
T ss_pred EeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEec-CceeEEeccccccceeeccCccccccccccCCC
Confidence 999999999999999999888876 466778888888887665543 45678888776655554432211
Q ss_pred -------------------CCC-CCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439 138 -------------------DMD-DTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 138 -------------------~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
..+ ......|.++|.++.|+|+|...++|+.||+|++|...
T Consensus 237 ~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~ 297 (334)
T KOG0278|consen 237 EFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTT 297 (334)
T ss_pred ceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEec
Confidence 011 11112237899999999999999999999999999864
No 34
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=1.7e-27 Score=165.31 Aligned_cols=171 Identities=16% Similarity=0.227 Sum_probs=130.1
Q ss_pred CCCccEEEEEcCCce----eEEeec--CCCceeEEEEcCCCCeEEEEe---------CC----------Ccee-----ee
Q 038439 1 MAYGKVKVWCTRQEA----SVLNID--MKANICCVKYNPGSSNYIAKY---------QS----------TAPC-----VH 50 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~----~~~~~~--~~~~v~~~~~~~~~~~~~~~~---------~~----------~~~~-----~~ 50 (179)
|-|.+|++||++... ..+.++ ....|++++|++.|..++++. +. .+.+ .+
T Consensus 186 s~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTK 265 (641)
T KOG0772|consen 186 SLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTK 265 (641)
T ss_pred cccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccC
Confidence 468899999998643 222232 456799999999998888776 11 1222 57
Q ss_pred cccCceeEEEEeeC--CeEEEecCCCcEEEEecCCCc-ceeeecC-----CCCCeEEEEEeeCCCEEEEeccCCcEEEEE
Q 038439 51 GHKKAVSYVKFLSN--DELASASTDSTLRLWDVKENL-PVRTFRG-----HMNEKNFVGLTVNSEYIACGSESNEVYVYH 122 (179)
Q Consensus 51 ~~~~~i~~~~~~~~--~~l~~~~~d~~v~iwd~~~~~-~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd 122 (179)
+|...++|.+|+|. +.|+|++.|+++|+||+...+ .++.++. ..-.+..++|+|+|..||+|+.||.|.+|+
T Consensus 266 GHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~ 345 (641)
T KOG0772|consen 266 GHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWD 345 (641)
T ss_pred CceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeee
Confidence 89999999999999 899999999999999998643 3333331 234678899999999999999999999999
Q ss_pred cCCCccccccccC-CCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439 123 KEISKPVTWHRFS-SPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA 179 (179)
Q Consensus 123 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 179 (179)
.........+... .|. ....|+++.|+++|++|++-+.|+++++|||+.
T Consensus 346 ~~~~~v~p~~~vk~AH~--------~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq 395 (641)
T KOG0772|consen 346 KGSRTVRPVMKVKDAHL--------PGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQ 395 (641)
T ss_pred cCCcccccceEeeeccC--------CCCceeEEEeccccchhhhccCCCceeeeeccc
Confidence 8653332222221 111 044899999999999999999999999999974
No 35
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.8e-26 Score=146.44 Aligned_cols=162 Identities=19% Similarity=0.243 Sum_probs=144.1
Q ss_pred CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe----------CCCcee--eecccCceeEEEEeeC-Ce
Q 038439 1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY----------QSTAPC--VHGHKKAVSYVKFLSN-DE 66 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~----------~~~~~~--~~~~~~~i~~~~~~~~-~~ 66 (179)
|+|++|++|+...+.+++++. |..+|..++.+.|...+.++| ++++.+ +.+|.+.|+.++|+.+ ..
T Consensus 36 GsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSV 115 (307)
T KOG0316|consen 36 GSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSV 115 (307)
T ss_pred CCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceE
Confidence 579999999999999999996 888999999999987887777 677777 9999999999999999 99
Q ss_pred EEEecCCCcEEEEecCC--CcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcc
Q 038439 67 LASASTDSTLRLWDVKE--NLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDE 144 (179)
Q Consensus 67 l~~~~~d~~v~iwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 144 (179)
+++|+.|..+++||.++ .++++.+......|.++..+ +..|++|+.||+++.||++.+....-+.
T Consensus 116 v~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~----------- 182 (307)
T KOG0316|consen 116 VASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYF----------- 182 (307)
T ss_pred EEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceeehhhc-----------
Confidence 99999999999999986 47788887777788888774 6689999999999999999998765543
Q ss_pred cCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439 145 DAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 145 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
..+|++++|+++++..++++-|+++++.|-.
T Consensus 183 ---g~pit~vs~s~d~nc~La~~l~stlrLlDk~ 213 (307)
T KOG0316|consen 183 ---GHPITSVSFSKDGNCSLASSLDSTLRLLDKE 213 (307)
T ss_pred ---CCcceeEEecCCCCEEEEeeccceeeecccc
Confidence 7789999999999999999999999998744
No 36
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.95 E-value=1.1e-26 Score=155.79 Aligned_cols=166 Identities=17% Similarity=0.360 Sum_probs=129.4
Q ss_pred CCCccEEEEEcCC----------------ceeEEeec-CCCceeEEEEcCCCCeEEEEe-----------CCCc----ee
Q 038439 1 MAYGKVKVWCTRQ----------------EASVLNID-MKANICCVKYNPGSSNYIAKY-----------QSTA----PC 48 (179)
Q Consensus 1 ~~d~~i~vwd~~~----------------~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~-----------~~~~----~~ 48 (179)
++.|.|+||++.. .+++.++. |+..=+.++|||-..-.+.+| .++. ..
T Consensus 172 se~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~ 251 (440)
T KOG0302|consen 172 SENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQR 251 (440)
T ss_pred cccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCc
Confidence 4679999999753 13455554 777889999999443334444 1111 11
Q ss_pred -eecccCceeEEEEeeC--CeEEEecCCCcEEEEecCCCc--ceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEc
Q 038439 49 -VHGHKKAVSYVKFLSN--DELASASTDSTLRLWDVKENL--PVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHK 123 (179)
Q Consensus 49 -~~~~~~~i~~~~~~~~--~~l~~~~~d~~v~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~ 123 (179)
+.+|+..|-.+.|+|. +.|++||-|++|+|||++.+. .....+.|.+.|+-++|+.+-.+|++|+.||+++|||+
T Consensus 252 Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDL 331 (440)
T KOG0302|consen 252 PFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDL 331 (440)
T ss_pred cccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEh
Confidence 6679999999999999 899999999999999999872 22334789999999999998889999999999999999
Q ss_pred CCCc---cccccccCCCCCCCCcccCCcceEEEEEEccC-CCeEEEEeCCCcEEEEeec
Q 038439 124 EISK---PVTWHRFSSPDMDDTDEDAGSYFISAVCWKSD-SPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 124 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~iwd~~ 178 (179)
|+-+ ++..++. |..+|+++.|+|. ...|++++.|..|.+||+.
T Consensus 332 R~~~~~~pVA~fk~------------Hk~pItsieW~p~e~s~iaasg~D~QitiWDls 378 (440)
T KOG0302|consen 332 RQFKSGQPVATFKY------------HKAPITSIEWHPHEDSVIAASGEDNQITIWDLS 378 (440)
T ss_pred hhccCCCcceeEEe------------ccCCeeEEEeccccCceEEeccCCCcEEEEEee
Confidence 9743 3434332 3889999999994 5678889999999999985
No 37
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.95 E-value=4e-27 Score=161.89 Aligned_cols=179 Identities=14% Similarity=0.242 Sum_probs=145.3
Q ss_pred CCCccEEEEEcCC-ceeEEeec-CCCceeEEEEcCCCCeEEEEe----------CCCceeeec-ccCceeEEEEeeC--C
Q 038439 1 MAYGKVKVWCTRQ-EASVLNID-MKANICCVKYNPGSSNYIAKY----------QSTAPCVHG-HKKAVSYVKFLSN--D 65 (179)
Q Consensus 1 ~~d~~i~vwd~~~-~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~----------~~~~~~~~~-~~~~i~~~~~~~~--~ 65 (179)
|-|+.|+||++-. ++++.++. |..+|.+++|+++|..++.++ .+++++..- -...++|+.|+|+ +
T Consensus 234 gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n 313 (503)
T KOG0282|consen 234 GMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQN 313 (503)
T ss_pred CCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCceeeecCCCCCc
Confidence 4699999999876 88999986 889999999999999999998 667776333 3456789999999 7
Q ss_pred eEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCC--------
Q 038439 66 ELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSP-------- 137 (179)
Q Consensus 66 ~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~-------- 137 (179)
.+++|..|+.|+.||+++++.++.+..|-+.+..+.|-++|+++++.+.|+.++||+.+.+-++........
T Consensus 314 ~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~ 393 (503)
T KOG0282|consen 314 IFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTL 393 (503)
T ss_pred EEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceec
Confidence 899999999999999999999999999999999999999999999999999999999887654433221100
Q ss_pred ---------------------------CCCCCcccCC-cceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439 138 ---------------------------DMDDTDEDAG-SYFISAVCWKSDSPTMLTANSQGTIKVLVLAA 179 (179)
Q Consensus 138 ---------------------------~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 179 (179)
.....+.+|. .+.-..+.|||||++|++|+.||.+.+||.++
T Consensus 394 ~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt 463 (503)
T KOG0282|consen 394 HPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKT 463 (503)
T ss_pred CCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechh
Confidence 0111122221 23456789999999999999999999999764
No 38
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=8.8e-27 Score=168.95 Aligned_cols=116 Identities=23% Similarity=0.401 Sum_probs=106.8
Q ss_pred eecccCceeEEEEeeCCeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEee-CCCEEEEeccCCcEEEEEcCCCc
Q 038439 49 VHGHKKAVSYVKFLSNDELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTV-NSEYIACGSESNEVYVYHKEISK 127 (179)
Q Consensus 49 ~~~~~~~i~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~d~~v~vwd~~~~~ 127 (179)
+.+|.+.|..+.|+.+++|+++|.|++||+|++...+++..|. |...|+|++|+| |.+||++|+-|+.|+||++...+
T Consensus 365 f~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~ 443 (712)
T KOG0283|consen 365 FKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKK 443 (712)
T ss_pred hhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccceEEeecCcCe
Confidence 7899999999999999999999999999999999999998885 899999999999 78999999999999999999887
Q ss_pred cccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439 128 PVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
.+.-..+ ..-|++++|.|+|+..+.|+.+|.+++|+..
T Consensus 444 Vv~W~Dl-------------~~lITAvcy~PdGk~avIGt~~G~C~fY~t~ 481 (712)
T KOG0283|consen 444 VVDWNDL-------------RDLITAVCYSPDGKGAVIGTFNGYCRFYDTE 481 (712)
T ss_pred eEeehhh-------------hhhheeEEeccCCceEEEEEeccEEEEEEcc
Confidence 7655544 5679999999999999999999999999864
No 39
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=6.1e-25 Score=158.85 Aligned_cols=147 Identities=19% Similarity=0.294 Sum_probs=119.4
Q ss_pred cCCCceeEEEEcC-CCCeEEEEe----------CCC-------cee--eecccCceeEEEEeeC--CeEEEecCCCcEEE
Q 038439 21 DMKANICCVKYNP-GSSNYIAKY----------QST-------APC--VHGHKKAVSYVKFLSN--DELASASTDSTLRL 78 (179)
Q Consensus 21 ~~~~~v~~~~~~~-~~~~~~~~~----------~~~-------~~~--~~~~~~~i~~~~~~~~--~~l~~~~~d~~v~i 78 (179)
.|.+.|.+++|+| ++..+++++ ... .++ +.+|...|.+++|+|+ +.|++++.|+.|++
T Consensus 73 GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrI 152 (493)
T PTZ00421 73 GQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNV 152 (493)
T ss_pred CCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEE
Confidence 4788999999999 664444444 111 233 7889999999999998 68999999999999
Q ss_pred EecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEcc
Q 038439 79 WDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKS 158 (179)
Q Consensus 79 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 158 (179)
||+++++.+..+..|...|.+++|+|+|.+|++++.|+.|++||+++++.+..+.. + .......+.|.+
T Consensus 153 WDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~--H---------~~~~~~~~~w~~ 221 (493)
T PTZ00421 153 WDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEA--H---------ASAKSQRCLWAK 221 (493)
T ss_pred EECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEec--C---------CCCcceEEEEcC
Confidence 99999998889999999999999999999999999999999999999887655432 1 123345678999
Q ss_pred CCCeEEEEe----CCCcEEEEeec
Q 038439 159 DSPTMLTAN----SQGTIKVLVLA 178 (179)
Q Consensus 159 ~~~~l~~~~----~dg~i~iwd~~ 178 (179)
++..+++++ .|+.|++||++
T Consensus 222 ~~~~ivt~G~s~s~Dr~VklWDlr 245 (493)
T PTZ00421 222 RKDLIITLGCSKSQQRQIMLWDTR 245 (493)
T ss_pred CCCeEEEEecCCCCCCeEEEEeCC
Confidence 888777654 47899999986
No 40
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=3.4e-26 Score=164.24 Aligned_cols=167 Identities=16% Similarity=0.263 Sum_probs=144.5
Q ss_pred CCCccEEEEEcCCcee----EEee-cCCCceeEEEEcCCCCeEEEEe---------------CCCcee-------eeccc
Q 038439 1 MAYGKVKVWCTRQEAS----VLNI-DMKANICCVKYNPGSSNYIAKY---------------QSTAPC-------VHGHK 53 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~~----~~~~-~~~~~v~~~~~~~~~~~~~~~~---------------~~~~~~-------~~~~~ 53 (179)
|.|+++++|.++++.. +... .|...|.+++++..+..+++++ .+..++ ...|.
T Consensus 384 sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHd 463 (775)
T KOG0319|consen 384 SKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHD 463 (775)
T ss_pred cCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhc
Confidence 5799999998854432 2222 4889999999998887788777 111122 35799
Q ss_pred CceeEEEEeeC-CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCcccccc
Q 038439 54 KAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWH 132 (179)
Q Consensus 54 ~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~ 132 (179)
+.|++++++|+ .+++|||.|++.++|++.+.+....+.+|...++++.|+|..+.+++++.|.+|+||.+.+..++.++
T Consensus 464 KdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~ 543 (775)
T KOG0319|consen 464 KDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTF 543 (775)
T ss_pred ccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeee
Confidence 99999999999 99999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred ccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439 133 RFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA 179 (179)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 179 (179)
. +| ...|..+.|-.++..|++++.||-+++|++.+
T Consensus 544 e-----------GH-~~aVlra~F~~~~~qliS~~adGliKlWnikt 578 (775)
T KOG0319|consen 544 E-----------GH-TSAVLRASFIRNGKQLISAGADGLIKLWNIKT 578 (775)
T ss_pred c-----------Cc-cceeEeeeeeeCCcEEEeccCCCcEEEEeccc
Confidence 5 22 88899999999999999999999999999864
No 41
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.95 E-value=6.8e-25 Score=168.17 Aligned_cols=177 Identities=46% Similarity=0.778 Sum_probs=139.9
Q ss_pred CCCccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe-----------CCCc-ee--eecccCceeEEEEeeCCe
Q 038439 1 MAYGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY-----------QSTA-PC--VHGHKKAVSYVKFLSNDE 66 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----------~~~~-~~--~~~~~~~i~~~~~~~~~~ 66 (179)
|.||+|++||+.+++.+..+.+...+.++.|++....++++| +..+ ++ +.+|...|.++.|.+...
T Consensus 595 s~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~ 674 (793)
T PLN00181 595 SDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSST 674 (793)
T ss_pred cCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCE
Confidence 579999999999999888888778899999965433555555 2222 33 678999999999974489
Q ss_pred EEEecCCCcEEEEecCC------CcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCC
Q 038439 67 LASASTDSTLRLWDVKE------NLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMD 140 (179)
Q Consensus 67 l~~~~~d~~v~iwd~~~------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~ 140 (179)
+++++.|+.|++||++. .+++..+.+|...+..++|+|++.+|++|+.|+.|++|+.....++..+........
T Consensus 675 lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~ 754 (793)
T PLN00181 675 LVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPV 754 (793)
T ss_pred EEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcc
Confidence 99999999999999974 356788889999999999999999999999999999999887665544333221110
Q ss_pred -CCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439 141 -DTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVL 177 (179)
Q Consensus 141 -~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 177 (179)
......+...|.+++|+|++..|++|+.||.|+||++
T Consensus 755 ~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 755 SGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred cccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 0011222567999999999999999999999999996
No 42
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=3.5e-25 Score=141.80 Aligned_cols=165 Identities=15% Similarity=0.224 Sum_probs=137.2
Q ss_pred CccEEEEEcCCceeE---EeecCCCceeEEEEcCCCCeEEEEe------------CCCcee--eecccCceeEEEEeeC-
Q 038439 3 YGKVKVWCTRQEASV---LNIDMKANICCVKYNPGSSNYIAKY------------QSTAPC--VHGHKKAVSYVKFLSN- 64 (179)
Q Consensus 3 d~~i~vwd~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~------------~~~~~~--~~~~~~~i~~~~~~~~- 64 (179)
.|++.|.++...+-+ ..+.-.+.+..++|++.....++++ ....|+ ++.|...|.++.|++.
T Consensus 37 ~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~ 116 (311)
T KOG0277|consen 37 NGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVR 116 (311)
T ss_pred CceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEecccccc
Confidence 588999998644433 3455788999999999876655554 334566 8999999999999998
Q ss_pred -CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeC-CCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCC
Q 038439 65 -DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVN-SEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDT 142 (179)
Q Consensus 65 -~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~ 142 (179)
..++++|.|++|++|+...++.+.++.+|...|....|+|. ++.+++++.|+.+++||++.......++.
T Consensus 117 r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~a-------- 188 (311)
T KOG0277|consen 117 RRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEA-------- 188 (311)
T ss_pred ceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEe--------
Confidence 67888899999999999989999999999999999999995 78899999999999999997544433332
Q ss_pred cccCCcceEEEEEEcc-CCCeEEEEeCCCcEEEEeecC
Q 038439 143 DEDAGSYFISAVCWKS-DSPTMLTANSQGTIKVLVLAA 179 (179)
Q Consensus 143 ~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~ 179 (179)
|...+.++.|+. +.+.|++|+.|+.|++||+++
T Consensus 189 ----h~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~ 222 (311)
T KOG0277|consen 189 ----HNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRN 222 (311)
T ss_pred ----ccceeEeecccccCCcEEEecCCCceEEEEehhh
Confidence 266899999997 778899999999999999874
No 43
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=4e-25 Score=142.01 Aligned_cols=165 Identities=19% Similarity=0.279 Sum_probs=143.0
Q ss_pred CCCccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe--------------------------------------
Q 038439 1 MAYGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY-------------------------------------- 42 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-------------------------------------- 42 (179)
+.|.+|++||.+.+++...+..+.+=.-+.|+|+|.++++.+
T Consensus 84 s~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Ff 163 (313)
T KOG1407|consen 84 SGDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFF 163 (313)
T ss_pred cCCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEE
Confidence 468999999999999999998777777789999996665555
Q ss_pred -------------CCCcee--eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCC
Q 038439 43 -------------QSTAPC--VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNS 106 (179)
Q Consensus 43 -------------~~~~~~--~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 106 (179)
..-+++ +++|.....||.|+|+ ++|++|+.|..+.+||+..--+++.+..+.-+|+.++|+.+|
T Consensus 164 lt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg 243 (313)
T KOG1407|consen 164 LTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDG 243 (313)
T ss_pred EecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCc
Confidence 222344 7889999999999999 999999999999999999888889999899999999999999
Q ss_pred CEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCC---------CcEEEEee
Q 038439 107 EYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQ---------GTIKVLVL 177 (179)
Q Consensus 107 ~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---------g~i~iwd~ 177 (179)
++||++++|..|-|=++++|..+..+.. .++...++|+|...+||-++.| |.+++|-+
T Consensus 244 ~~lASaSEDh~IDIA~vetGd~~~eI~~-------------~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~ 310 (313)
T KOG1407|consen 244 RMLASASEDHFIDIAEVETGDRVWEIPC-------------EGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGL 310 (313)
T ss_pred ceeeccCccceEEeEecccCCeEEEeec-------------cCCceeEEecCCCceeeEEecCCCCccccccceeEEecC
Confidence 9999999999999999999999877765 6678999999999988877663 57888866
Q ss_pred c
Q 038439 178 A 178 (179)
Q Consensus 178 ~ 178 (179)
.
T Consensus 311 ~ 311 (313)
T KOG1407|consen 311 S 311 (313)
T ss_pred C
Confidence 4
No 44
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.1e-25 Score=144.08 Aligned_cols=165 Identities=18% Similarity=0.281 Sum_probs=142.2
Q ss_pred CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe------------CCCcee-eecccCceeEEEEeeC--
Q 038439 1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY------------QSTAPC-VHGHKKAVSYVKFLSN-- 64 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~------------~~~~~~-~~~~~~~i~~~~~~~~-- 64 (179)
|.|++||+|+...++.+.++. |...|...+|+|..+.+++.. ..++.+ +..|...|.|+.|+.-
T Consensus 124 SWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~ 203 (311)
T KOG0277|consen 124 SWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNH 203 (311)
T ss_pred ccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCC
Confidence 689999999999999999986 888999999999988888876 446666 8899999999999976
Q ss_pred CeEEEecCCCcEEEEecCC-CcceeeecCCCCCeEEEEEeeC-CCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCC
Q 038439 65 DELASASTDSTLRLWDVKE-NLPVRTFRGHMNEKNFVGLTVN-SEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDT 142 (179)
Q Consensus 65 ~~l~~~~~d~~v~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~ 142 (179)
..++||+.|+.|+.||++. ..++..+.+|.-.|+.+.|+|. ...|++++.|-++++||...........
T Consensus 204 ~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~--------- 274 (311)
T KOG0277|consen 204 NVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETV--------- 274 (311)
T ss_pred cEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhh---------
Confidence 8899999999999999987 5677888899999999999996 5678999999999999998654432221
Q ss_pred cccCCcceEEEEEEcc-CCCeEEEEeCCCcEEEEe
Q 038439 143 DEDAGSYFISAVCWKS-DSPTMLTANSQGTIKVLV 176 (179)
Q Consensus 143 ~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd 176 (179)
.+|...+..+.|++ ++.++|+++.|+.++||+
T Consensus 275 --~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 275 --DHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred --hccceEEeccccccccCceeeecccccceeeec
Confidence 24488899999998 678899999999999998
No 45
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=9.1e-26 Score=165.41 Aligned_cols=175 Identities=15% Similarity=0.213 Sum_probs=146.9
Q ss_pred CccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe----------CCCcee--eecccCceeEEEEeeC-CeEE
Q 038439 3 YGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY----------QSTAPC--VHGHKKAVSYVKFLSN-DELA 68 (179)
Q Consensus 3 d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~----------~~~~~~--~~~~~~~i~~~~~~~~-~~l~ 68 (179)
.|.|++||++-+.++..|. |.++|..++|+|+++.+++.| ...+++ +.+|..-|..+.|++. ..++
T Consensus 30 sG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIl 109 (1202)
T KOG0292|consen 30 SGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWIL 109 (1202)
T ss_pred CceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEE
Confidence 5899999999999999885 999999999999997666666 455666 8899999999999999 9999
Q ss_pred EecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCcccccccc--------------
Q 038439 69 SASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRF-------------- 134 (179)
Q Consensus 69 ~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~-------------- 134 (179)
++|.|.+||||+..+++++..+.+|..-|.|.+|+|....+++++.|-+|+|||+..-+.......
T Consensus 110 SASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~d 189 (1202)
T KOG0292|consen 110 SASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSD 189 (1202)
T ss_pred EccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchh
Confidence 999999999999999999999999999999999999999999999999999999864322211110
Q ss_pred --CCC--CCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439 135 --SSP--DMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 135 --~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
... .......+| ...|+-++|+|.-..+++|++|..|++|.++
T Consensus 190 Lfg~~DaVVK~VLEGH-DRGVNwaAfhpTlpliVSG~DDRqVKlWrmn 236 (1202)
T KOG0292|consen 190 LFGQTDAVVKHVLEGH-DRGVNWAAFHPTLPLIVSGADDRQVKLWRMN 236 (1202)
T ss_pred hcCCcCeeeeeeeccc-ccccceEEecCCcceEEecCCcceeeEEEec
Confidence 000 011112333 7889999999999999999999999999875
No 46
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.94 E-value=4.2e-24 Score=145.18 Aligned_cols=165 Identities=21% Similarity=0.343 Sum_probs=137.6
Q ss_pred CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe-----------CCCcee--eecccCceeEEEEeeC-C
Q 038439 1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY-----------QSTAPC--VHGHKKAVSYVKFLSN-D 65 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~--~~~~~~~i~~~~~~~~-~ 65 (179)
+.||.|++||+.+++.+..+. +...+.++.|+|++. +++++ ...+.+ +..|...+.++.|+|+ .
T Consensus 70 ~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 148 (289)
T cd00200 70 SSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGR-ILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGT 148 (289)
T ss_pred cCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCC-EEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCC
Confidence 358999999999877777665 667899999999974 55544 223333 5568889999999998 7
Q ss_pred eEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCccc
Q 038439 66 ELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDED 145 (179)
Q Consensus 66 ~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 145 (179)
++++++.++.+++||++.++.+..+..+...+.++.|+|+++.+++++.++.+++||+++++.+..+.. +
T Consensus 149 ~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~--~-------- 218 (289)
T cd00200 149 FVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRG--H-------- 218 (289)
T ss_pred EEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhh--c--------
Confidence 788877799999999998888888888888999999999999999999999999999998777655431 1
Q ss_pred CCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439 146 AGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 146 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
...+.+++|+|++.++++++.||.+++||+.
T Consensus 219 --~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~ 249 (289)
T cd00200 219 --ENGVNSVAFSPDGYLLASGSEDGTIRVWDLR 249 (289)
T ss_pred --CCceEEEEEcCCCcEEEEEcCCCcEEEEEcC
Confidence 5589999999998888888889999999985
No 47
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.94 E-value=2.2e-25 Score=149.52 Aligned_cols=168 Identities=16% Similarity=0.289 Sum_probs=139.2
Q ss_pred CCCccEEEEEcCCceeEEee-----cCCCceeEEEEcCCCCeEEEEe---------------------------------
Q 038439 1 MAYGKVKVWCTRQEASVLNI-----DMKANICCVKYNPGSSNYIAKY--------------------------------- 42 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~--------------------------------- 42 (179)
|.|.++++|-.+.++..... .|+..|-+++..++|..++..+
T Consensus 166 s~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~ 245 (423)
T KOG0313|consen 166 SMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREK 245 (423)
T ss_pred cCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhh
Confidence 57999999998877543222 5899999999999996665554
Q ss_pred --CCCcee--eecccCceeEEEEeeCCeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcE
Q 038439 43 --QSTAPC--VHGHKKAVSYVKFLSNDELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEV 118 (179)
Q Consensus 43 --~~~~~~--~~~~~~~i~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v 118 (179)
..+.|+ +.+|+.+|.++.|++...++++|.|.+|+.||+.++....++.. .....+++++|..++|++|+.|..+
T Consensus 246 ~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~i 324 (423)
T KOG0313|consen 246 EGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHI 324 (423)
T ss_pred cccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCce
Confidence 233455 89999999999998888999999999999999999998888875 5678999999999999999999999
Q ss_pred EEEEcCCCcc-ccccccCCCCCCCCcccCCcceEEEEEEcc-CCCeEEEEeCCCcEEEEeecC
Q 038439 119 YVYHKEISKP-VTWHRFSSPDMDDTDEDAGSYFISAVCWKS-DSPTMLTANSQGTIKVLVLAA 179 (179)
Q Consensus 119 ~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~ 179 (179)
++||.+++.- +..+.+-+| ...|.++.|+| +...|++|+.|+++++||+++
T Consensus 325 rl~DPR~~~gs~v~~s~~gH----------~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS 377 (423)
T KOG0313|consen 325 RLWDPRTGDGSVVSQSLIGH----------KNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRS 377 (423)
T ss_pred eecCCCCCCCceeEEeeecc----------hhhhhheecCCCCceEEEEEecCCeEEEEEecc
Confidence 9999998643 333444333 77999999999 456788999999999999975
No 48
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=2.4e-25 Score=157.87 Aligned_cols=162 Identities=22% Similarity=0.326 Sum_probs=141.9
Q ss_pred CCCccEEEEEcCC-ceeEEeec-CCCceeEEEEcCCCCeEEEEe---------CCCce--e--eecccCceeEEEEeeC-
Q 038439 1 MAYGKVKVWCTRQ-EASVLNID-MKANICCVKYNPGSSNYIAKY---------QSTAP--C--VHGHKKAVSYVKFLSN- 64 (179)
Q Consensus 1 ~~d~~i~vwd~~~-~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~---------~~~~~--~--~~~~~~~i~~~~~~~~- 64 (179)
|+|-+|++||.+. ..+.++++ |..-|.+++|+|..+.-++++ .-+++ . +.+|...|+|+.|-+.
T Consensus 116 SDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~g 195 (794)
T KOG0276|consen 116 SDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGG 195 (794)
T ss_pred CCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCC
Confidence 6899999999986 46777886 888899999999888888777 22222 2 8899999999999876
Q ss_pred --CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCC
Q 038439 65 --DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDT 142 (179)
Q Consensus 65 --~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~ 142 (179)
.+|++|+.|.+++|||.++..+++++.+|...|..+.|+|.-..|++|++||++++|+-.+.+....+.+.
T Consensus 196 dkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~g------- 268 (794)
T KOG0276|consen 196 DKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYG------- 268 (794)
T ss_pred CcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcC-------
Confidence 69999999999999999999999999999999999999999999999999999999999998877776654
Q ss_pred cccCCcceEEEEEEccCCCeEEEEeCCCcEEE
Q 038439 143 DEDAGSYFISAVCWKSDSPTMLTANSQGTIKV 174 (179)
Q Consensus 143 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 174 (179)
..++++++-.+.++.++.|.+.|.|.+
T Consensus 269 -----leRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 269 -----LERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred -----CceEEEEeecCCCCeEEEeccCCcEEE
Confidence 668999999998888999998887654
No 49
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.94 E-value=5e-24 Score=144.78 Aligned_cols=165 Identities=23% Similarity=0.350 Sum_probs=138.8
Q ss_pred CCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe----------CCCcee--eecccCceeEEEEeeC-CeE
Q 038439 2 AYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY----------QSTAPC--VHGHKKAVSYVKFLSN-DEL 67 (179)
Q Consensus 2 ~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~----------~~~~~~--~~~~~~~i~~~~~~~~-~~l 67 (179)
.||.|++|++.+++....+. +...+..+.|+|++..+++++ ..++.+ +..|...+.++.|+|+ .++
T Consensus 29 ~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 108 (289)
T cd00200 29 GDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRIL 108 (289)
T ss_pred cCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEE
Confidence 58999999999887666664 677889999999996666665 222233 6678889999999999 788
Q ss_pred EEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCC
Q 038439 68 ASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAG 147 (179)
Q Consensus 68 ~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (179)
++++.++.+++||+++++....+..|...+.++.|+|++.++++++.++.|++||+++++....+.. +
T Consensus 109 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~--~---------- 176 (289)
T cd00200 109 SSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTG--H---------- 176 (289)
T ss_pred EEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEec--C----------
Confidence 8888899999999998888888888888999999999999999888899999999998777655542 1
Q ss_pred cceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439 148 SYFISAVCWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 148 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
...+.++.|+|+++.+++++.++.+++||++
T Consensus 177 ~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~ 207 (289)
T cd00200 177 TGEVNSVAFSPDGEKLLSSSSDGTIKLWDLS 207 (289)
T ss_pred ccccceEEECCCcCEEEEecCCCcEEEEECC
Confidence 5579999999999999999999999999986
No 50
>PTZ00420 coronin; Provisional
Probab=99.94 E-value=6.3e-24 Score=154.75 Aligned_cols=168 Identities=15% Similarity=0.170 Sum_probs=124.3
Q ss_pred CCCccEEEEEcCCce--------eEEee-cCCCceeEEEEcCCCCeEEEEe-----------CCCcee-eecccCceeEE
Q 038439 1 MAYGKVKVWCTRQEA--------SVLNI-DMKANICCVKYNPGSSNYIAKY-----------QSTAPC-VHGHKKAVSYV 59 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~--------~~~~~-~~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~-~~~~~~~i~~~ 59 (179)
|.|++|+|||+.++. ++..+ .|...|.+++|+|++..+++++ ..++.+ ...|...|.++
T Consensus 94 S~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~Sl 173 (568)
T PTZ00420 94 SEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSL 173 (568)
T ss_pred eCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEE
Confidence 579999999997642 22334 3788999999999987776654 223333 12356789999
Q ss_pred EEeeC-CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEE-----EEeeCCCEEEEeccCC----cEEEEEcCC-Ccc
Q 038439 60 KFLSN-DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFV-----GLTVNSEYIACGSESN----EVYVYHKEI-SKP 128 (179)
Q Consensus 60 ~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~-----~~~~~~~~~~~~~~d~----~v~vwd~~~-~~~ 128 (179)
+|+|+ .+|++++.|+.|++||+++++.+..+.+|.+.+... .|++++.++++++.++ .|++||++. .++
T Consensus 174 swspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~p 253 (568)
T PTZ00420 174 KWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSA 253 (568)
T ss_pred EECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCc
Confidence 99999 889999999999999999999999998888754432 3458888999877664 799999995 555
Q ss_pred ccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439 129 VTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
+........ ...+.-....+++.++++|+.|+.|++|++.
T Consensus 254 l~~~~ld~~----------~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~ 293 (568)
T PTZ00420 254 LVTMSIDNA----------SAPLIPHYDESTGLIYLIGKGDGNCRYYQHS 293 (568)
T ss_pred eEEEEecCC----------ccceEEeeeCCCCCEEEEEECCCeEEEEEcc
Confidence 554443221 2233333335568899999999999999975
No 51
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.94 E-value=2.4e-24 Score=149.95 Aligned_cols=171 Identities=19% Similarity=0.228 Sum_probs=142.4
Q ss_pred cEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe--------CCCcee-----eecccCceeEEEEeeC-CeEEE
Q 038439 5 KVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY--------QSTAPC-----VHGHKKAVSYVKFLSN-DELAS 69 (179)
Q Consensus 5 ~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~--------~~~~~~-----~~~~~~~i~~~~~~~~-~~l~~ 69 (179)
.+.+|| ++..+-.+. |...|++++|-|..+.-++++ -.+.|. +..|.+-|.|++|+|| .++++
T Consensus 130 ~~F~~D--SG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat 207 (603)
T KOG0318|consen 130 HVFLWD--SGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFAT 207 (603)
T ss_pred EEEEec--CCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEE
Confidence 445555 556666664 788899999999998888887 223333 6679999999999999 99999
Q ss_pred ecCCCcEEEEecCCCcceeeec---CCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCC---------
Q 038439 70 ASTDSTLRLWDVKENLPVRTFR---GHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSP--------- 137 (179)
Q Consensus 70 ~~~d~~v~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~--------- 137 (179)
++.|+.+.+||=.+++.+..+. +|.+.|+.++|+||+..+++++.|.+++|||+.+.+.+.++.....
T Consensus 208 ~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~l 287 (603)
T KOG0318|consen 208 AGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCL 287 (603)
T ss_pred ecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEE
Confidence 9999999999999999999887 7999999999999999999999999999999998877666543322
Q ss_pred -----------------------CCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439 138 -----------------------DMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 138 -----------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
.......+| ...|+++..+|++.+|++|+.||.|.-|+..
T Consensus 288 Wqkd~lItVSl~G~in~ln~~d~~~~~~i~GH-nK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~ 350 (603)
T KOG0318|consen 288 WQKDHLITVSLSGTINYLNPSDPSVLKVISGH-NKSITALTVSPDGKTIYSGSYDGHINSWDSG 350 (603)
T ss_pred EeCCeEEEEEcCcEEEEecccCCChhheeccc-ccceeEEEEcCCCCEEEeeccCceEEEEecC
Confidence 222334455 7889999999999999999999999999975
No 52
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2.9e-24 Score=138.63 Aligned_cols=178 Identities=16% Similarity=0.238 Sum_probs=136.7
Q ss_pred CCCccEEEEEcCC--ceeEEeec-CCCceeEEEEcCCCCeEEEEe-------------CCCcee--eecccCceeEEEEe
Q 038439 1 MAYGKVKVWCTRQ--EASVLNID-MKANICCVKYNPGSSNYIAKY-------------QSTAPC--VHGHKKAVSYVKFL 62 (179)
Q Consensus 1 ~~d~~i~vwd~~~--~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~-------------~~~~~~--~~~~~~~i~~~~~~ 62 (179)
|-|.++.||.-.. .+++..++ |..+|.+++|+++|..|..++ ...+++ ++.|+..|..+.|+
T Consensus 80 SFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WH 159 (312)
T KOG0645|consen 80 SFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWH 159 (312)
T ss_pred eccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEc
Confidence 4688999998654 46777776 889999999999995444444 122333 88999999999999
Q ss_pred eC-CeEEEecCCCcEEEEecC---CCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCc------ccccc
Q 038439 63 SN-DELASASTDSTLRLWDVK---ENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISK------PVTWH 132 (179)
Q Consensus 63 ~~-~~l~~~~~d~~v~iwd~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~------~~~~~ 132 (179)
|. .+|+++|.|.+|++|.-. .-++++++.+|...|.+++|++.|..+++++.|++++||.+.+.- .+...
T Consensus 160 Pt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~~~~sr~~Y~v 239 (312)
T KOG0645|consen 160 PTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLSGMHSRALYDV 239 (312)
T ss_pred CCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcchhcccceEee
Confidence 99 999999999999999876 246788999999999999999999999999999999999854321 11101
Q ss_pred ccC-------------------C----C--CCCCCcccCCcceEEEEEEccC-CCeEEEEeCCCcEEEEeec
Q 038439 133 RFS-------------------S----P--DMDDTDEDAGSYFISAVCWKSD-SPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 133 ~~~-------------------~----~--~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~iwd~~ 178 (179)
... . + .........|+..|+++.|.|. .+.|++|+.||.|++|.+.
T Consensus 240 ~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 240 PWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred eecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 000 0 0 0011123445779999999994 6889999999999999875
No 53
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.93 E-value=7.5e-25 Score=157.97 Aligned_cols=164 Identities=13% Similarity=0.215 Sum_probs=141.1
Q ss_pred CCCccEEEEEcCC-----c--eeE------EeecCCCceeEEEEcCCCCeEEEEe-----------CCCcee--eecccC
Q 038439 1 MAYGKVKVWCTRQ-----E--ASV------LNIDMKANICCVKYNPGSSNYIAKY-----------QSTAPC--VHGHKK 54 (179)
Q Consensus 1 ~~d~~i~vwd~~~-----~--~~~------~~~~~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~--~~~~~~ 54 (179)
|.|.+|++||..- + +.+ .+++....|.|+++|||| .+++++ ++-+.. +.+|.-
T Consensus 473 saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdg-k~LaVsLLdnTVkVyflDtlKFflsLYGHkL 551 (888)
T KOG0306|consen 473 SADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDG-KLLAVSLLDNTVKVYFLDTLKFFLSLYGHKL 551 (888)
T ss_pred cCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCC-cEEEEEeccCeEEEEEecceeeeeeeccccc
Confidence 6799999999641 1 111 234567889999999999 677777 333333 889999
Q ss_pred ceeEEEEeeC-CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccc
Q 038439 55 AVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHR 133 (179)
Q Consensus 55 ~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~ 133 (179)
||.|+..+|+ ..++|||.|+.|++|-+.-|.+-..+.+|...|.++.|.|+...+++++.|+.|+-||-...+.++.+.
T Consensus 552 PV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~ 631 (888)
T KOG0306|consen 552 PVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLD 631 (888)
T ss_pred ceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeec
Confidence 9999999999 999999999999999999999999999999999999999999999999999999999998887776654
Q ss_pred cCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439 134 FSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVL 177 (179)
Q Consensus 134 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 177 (179)
.| ...|++++.+|+|.++++++.|..|++|.-
T Consensus 632 -----------~H-~~ev~cLav~~~G~~vvs~shD~sIRlwE~ 663 (888)
T KOG0306|consen 632 -----------GH-HSEVWCLAVSPNGSFVVSSSHDKSIRLWER 663 (888)
T ss_pred -----------cc-hheeeeeEEcCCCCeEEeccCCceeEeeec
Confidence 22 678999999999999999999999999974
No 54
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.93 E-value=1.2e-23 Score=161.36 Aligned_cols=164 Identities=19% Similarity=0.293 Sum_probs=129.9
Q ss_pred CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe-----------CCCcee--eecccCceeEEEEeeC--
Q 038439 1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY-----------QSTAPC--VHGHKKAVSYVKFLSN-- 64 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~--~~~~~~~i~~~~~~~~-- 64 (179)
+.||+|+|||+.+++.+..+. |...|.+++|+|....++++| +.+..+ +. +...+.++.|++.
T Consensus 552 ~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~g 630 (793)
T PLN00181 552 NFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK-TKANICCVQFPSESG 630 (793)
T ss_pred eCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe-cCCCeEEEEEeCCCC
Confidence 469999999999998888775 889999999997433455544 223333 33 3357889999654
Q ss_pred CeEEEecCCCcEEEEecCCCc-ceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCc------cccccccCCC
Q 038439 65 DELASASTDSTLRLWDVKENL-PVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISK------PVTWHRFSSP 137 (179)
Q Consensus 65 ~~l~~~~~d~~v~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~------~~~~~~~~~~ 137 (179)
..+++|+.|+.|++||++..+ .+..+.+|...|..+.|. ++.++++++.|+.|++||++.+. ++.. +.
T Consensus 631 ~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~--~~-- 705 (793)
T PLN00181 631 RSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHS--FM-- 705 (793)
T ss_pred CEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEE--Ec--
Confidence 789999999999999998765 566778899999999997 78899999999999999998542 2211 21
Q ss_pred CCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439 138 DMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 138 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
+| ...+..++|+|++++|++|+.|+.|++|+..
T Consensus 706 -------gh-~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~ 738 (793)
T PLN00181 706 -------GH-TNVKNFVGLSVSDGYIATGSETNEVFVYHKA 738 (793)
T ss_pred -------CC-CCCeeEEEEcCCCCEEEEEeCCCEEEEEECC
Confidence 22 6678899999999999999999999999853
No 55
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.93 E-value=1.1e-24 Score=142.27 Aligned_cols=145 Identities=21% Similarity=0.350 Sum_probs=125.1
Q ss_pred cCCCceeEEEEcCCCCeEEEEe-----------CCCcee--eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCcc
Q 038439 21 DMKANICCVKYNPGSSNYIAKY-----------QSTAPC--VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLP 86 (179)
Q Consensus 21 ~~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~--~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~ 86 (179)
.|++.|..+.|+|+|..++..| ...+.. +++|.+.|..+.|.++ +.+++++.|++++.||.++++.
T Consensus 45 gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~ 124 (338)
T KOG0265|consen 45 GHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKR 124 (338)
T ss_pred CCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEeccccee
Confidence 4889999999999996555555 111222 7899999999999999 9999999999999999999999
Q ss_pred eeeecCCCCCeEEEEEeeCCC-EEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEE
Q 038439 87 VRTFRGHMNEKNFVGLTVNSE-YIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLT 165 (179)
Q Consensus 87 ~~~~~~~~~~v~~~~~~~~~~-~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 165 (179)
++.++.|...++.+.-+.-|. ++.+++.|+++++||+|+.+.++.++. ...++++.|..++..+.+
T Consensus 125 ~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~-------------kyqltAv~f~d~s~qv~s 191 (338)
T KOG0265|consen 125 IRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN-------------KYQLTAVGFKDTSDQVIS 191 (338)
T ss_pred eehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcccc-------------ceeEEEEEecccccceee
Confidence 999999999999988554454 467889999999999999998887754 668999999999999999
Q ss_pred EeCCCcEEEEeec
Q 038439 166 ANSQGTIKVLVLA 178 (179)
Q Consensus 166 ~~~dg~i~iwd~~ 178 (179)
|+-|+.|++||++
T Consensus 192 ggIdn~ikvWd~r 204 (338)
T KOG0265|consen 192 GGIDNDIKVWDLR 204 (338)
T ss_pred ccccCceeeeccc
Confidence 9999999999985
No 56
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=6.4e-25 Score=145.15 Aligned_cols=165 Identities=18% Similarity=0.325 Sum_probs=140.4
Q ss_pred CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe-------------------------------------
Q 038439 1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY------------------------------------- 42 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~------------------------------------- 42 (179)
|.|.+.+||.++++.|+..+. |.+.|++++|++.+. ++.++
T Consensus 167 SADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~-L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe 245 (481)
T KOG0300|consen 167 SADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGL-LLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDE 245 (481)
T ss_pred ccccceeEEeeccccceeeecccccceeeEEeccccc-eEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccc
Confidence 578999999999999999996 889999999999984 54444
Q ss_pred --------------CCCcee--eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeC
Q 038439 43 --------------QSTAPC--VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVN 105 (179)
Q Consensus 43 --------------~~~~~~--~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 105 (179)
....|+ +.+|...|.+..|... ..+++++.|.+..+||+++++++..+.+|....+.++-+|.
T Consensus 246 ~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHpt 325 (481)
T KOG0300|consen 246 HNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPT 325 (481)
T ss_pred cccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCc
Confidence 011233 8899999999999988 99999999999999999999999999999999999999999
Q ss_pred CCEEEEeccCCcEEEEEcCCCccccccc-cCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439 106 SEYIACGSESNEVYVYHKEISKPVTWHR-FSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA 179 (179)
Q Consensus 106 ~~~~~~~~~d~~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 179 (179)
.+++++.+.|.+.++||.+. .++... +. +| ...|+++.|..+.+ +++|+.|.+|+|||+++
T Consensus 326 QrLVvTsSrDtTFRLWDFRe--aI~sV~VFQ---------GH-tdtVTS~vF~~dd~-vVSgSDDrTvKvWdLrN 387 (481)
T KOG0300|consen 326 QRLVVTSSRDTTFRLWDFRE--AIQSVAVFQ---------GH-TDTVTSVVFNTDDR-VVSGSDDRTVKVWDLRN 387 (481)
T ss_pred ceEEEEeccCceeEeccchh--hcceeeeec---------cc-ccceeEEEEecCCc-eeecCCCceEEEeeecc
Confidence 99999999999999999983 233222 22 23 77899999987655 88999999999999975
No 57
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=4.9e-24 Score=135.44 Aligned_cols=164 Identities=16% Similarity=0.220 Sum_probs=136.2
Q ss_pred CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe-------------CCCcee--eecccCceeEEEEeeC
Q 038439 1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY-------------QSTAPC--VHGHKKAVSYVKFLSN 64 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~-------------~~~~~~--~~~~~~~i~~~~~~~~ 64 (179)
|.|+.+.+||+++++.+..+. |.+.|+.++|+.+. .+++.| +..+|+ +......|.++....
T Consensus 78 GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNees-SVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~- 155 (307)
T KOG0316|consen 78 GGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEES-SVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAE- 155 (307)
T ss_pred CCCceEEEEEcccCeeeeecccccceeeEEEecCcc-eEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecc-
Confidence 468999999999999999996 88999999999988 455555 556666 667777888887654
Q ss_pred CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcc
Q 038439 65 DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDE 144 (179)
Q Consensus 65 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 144 (179)
..+++||.||++|.||++.++....+- ..+|+++.|+++++..+.++.|+.+++.|-.+++.+..+.-...
T Consensus 156 heIvaGS~DGtvRtydiR~G~l~sDy~--g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn------- 226 (307)
T KOG0316|consen 156 HEIVAGSVDGTVRTYDIRKGTLSSDYF--GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKN------- 226 (307)
T ss_pred cEEEeeccCCcEEEEEeecceeehhhc--CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhccccc-------
Confidence 688999999999999999998766554 45799999999999999999999999999999999887653211
Q ss_pred cCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439 145 DAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 145 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
...-...+++.....+++|+.||.+++|||.
T Consensus 227 ---~eykldc~l~qsdthV~sgSEDG~Vy~wdLv 257 (307)
T KOG0316|consen 227 ---MEYKLDCCLNQSDTHVFSGSEDGKVYFWDLV 257 (307)
T ss_pred ---ceeeeeeeecccceeEEeccCCceEEEEEec
Confidence 2334556777788899999999999999985
No 58
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.93 E-value=2.2e-24 Score=147.22 Aligned_cols=178 Identities=19% Similarity=0.272 Sum_probs=134.6
Q ss_pred CCCccEEEEEcCCcee-------EEee-cCCCceeEEEEcCCCCeEEEEe-----------C--CCcee--eecccCcee
Q 038439 1 MAYGKVKVWCTRQEAS-------VLNI-DMKANICCVKYNPGSSNYIAKY-----------Q--STAPC--VHGHKKAVS 57 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~~-------~~~~-~~~~~v~~~~~~~~~~~~~~~~-----------~--~~~~~--~~~~~~~i~ 57 (179)
++|++|.+||+..... ...+ .|...|..++|+|....++++. + ..++- ..+|.+.|+
T Consensus 197 ~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn 276 (422)
T KOG0264|consen 197 SDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVN 276 (422)
T ss_pred cCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCcee
Confidence 5799999999875332 2233 3889999999999776666654 3 22222 778999999
Q ss_pred EEEEeeC--CeEEEecCCCcEEEEecCC-CcceeeecCCCCCeEEEEEeeC-CCEEEEeccCCcEEEEEcCCCccccccc
Q 038439 58 YVKFLSN--DELASASTDSTLRLWDVKE-NLPVRTFRGHMNEKNFVGLTVN-SEYIACGSESNEVYVYHKEISKPVTWHR 133 (179)
Q Consensus 58 ~~~~~~~--~~l~~~~~d~~v~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~d~~v~vwd~~~~~~~~~~~ 133 (179)
|++|+|- ..|||||.|++|++||+|. .+++.++.+|...|..+.|+|+ ...+++++.|+.+.+||+..-...+...
T Consensus 277 ~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~e 356 (422)
T KOG0264|consen 277 CVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPE 356 (422)
T ss_pred EEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChh
Confidence 9999998 7889999999999999997 4678899999999999999997 4568899999999999998643332211
Q ss_pred c--CCCCCCCCcccCCcceEEEEEEccCCCe-EEEEeCCCcEEEEeec
Q 038439 134 F--SSPDMDDTDEDAGSYFISAVCWKSDSPT-MLTANSQGTIKVLVLA 178 (179)
Q Consensus 134 ~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~dg~i~iwd~~ 178 (179)
. ..+.......+.|...|..+.|+|+..+ +++.+.|+.+.||.+.
T Consensus 357 da~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 357 DAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred hhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 1 1111111122233888999999998765 5678889999999875
No 59
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.7e-24 Score=151.98 Aligned_cols=172 Identities=16% Similarity=0.268 Sum_probs=140.1
Q ss_pred CCccEEEEEcCCceeEEeec--CCCceeEEEEcCCCCeEEEEe-----------CCCcee---eecccCceeEEEEeeC-
Q 038439 2 AYGKVKVWCTRQEASVLNID--MKANICCVKYNPGSSNYIAKY-----------QSTAPC---VHGHKKAVSYVKFLSN- 64 (179)
Q Consensus 2 ~d~~i~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~---~~~~~~~i~~~~~~~~- 64 (179)
.+|.|.|||..+.+.+..+. |...|-+++|+. ..+.+| +..+.+ +.+|...|..++|+++
T Consensus 237 ~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~---~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~ 313 (484)
T KOG0305|consen 237 SDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNS---SVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDG 313 (484)
T ss_pred cCCeEEEEehhhccccccccCCcCceeEEEeccC---ceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCC
Confidence 57999999999888877775 688999999994 566666 222222 6789999999999999
Q ss_pred CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeC-CCEEEEec--cCCcEEEEEcCCCccccccccCCC----
Q 038439 65 DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVN-SEYIACGS--ESNEVYVYHKEISKPVTWHRFSSP---- 137 (179)
Q Consensus 65 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~--~d~~v~vwd~~~~~~~~~~~~~~~---- 137 (179)
.++++|+.|..+.|||....+++..+..|...|..++|+|- ...||+|+ .|+.|++||..++..+........
T Consensus 314 ~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL 393 (484)
T KOG0305|consen 314 NQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSL 393 (484)
T ss_pred CeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeE
Confidence 99999999999999999888899999999999999999995 66788875 499999999988766554332221
Q ss_pred ----------------------------CCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439 138 ----------------------------DMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVL 177 (179)
Q Consensus 138 ----------------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 177 (179)
.......+ |...|..++++|||..+++|+.|.++++|++
T Consensus 394 ~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~g-H~~RVl~la~SPdg~~i~t~a~DETlrfw~~ 460 (484)
T KOG0305|consen 394 IWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLG-HTSRVLYLALSPDGETIVTGAADETLRFWNL 460 (484)
T ss_pred EEcCCCCEEEEecCCCCCcEEEEeccccceeeeecC-CcceeEEEEECCCCCEEEEecccCcEEeccc
Confidence 11122233 4888999999999999999999999999986
No 60
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.93 E-value=8.2e-24 Score=144.32 Aligned_cols=165 Identities=13% Similarity=0.225 Sum_probs=137.9
Q ss_pred CCCccEEEEEcCCceeEEe-ecCCCceeEEEEcCCCCeEEEEe----------CCCcee-eecc---cCceeEEEEeeC-
Q 038439 1 MAYGKVKVWCTRQEASVLN-IDMKANICCVKYNPGSSNYIAKY----------QSTAPC-VHGH---KKAVSYVKFLSN- 64 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~----------~~~~~~-~~~~---~~~i~~~~~~~~- 64 (179)
|.|..|+||.......... ..|.++|+.+..+|.|.+++.+. +.+..+ ...+ .-.+++++|+||
T Consensus 280 Sad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDg 359 (506)
T KOG0289|consen 280 SADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDG 359 (506)
T ss_pred CCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCc
Confidence 4688999999876654433 45999999999999998888876 445555 2222 234899999999
Q ss_pred CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcc
Q 038439 65 DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDE 144 (179)
Q Consensus 65 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 144 (179)
..|.+|..|+.|++||+.+...+..|.+|.++|..++|+.+|=+++++..|+.|++||+|..+..+.+....
T Consensus 360 Lifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~-------- 431 (506)
T KOG0289|consen 360 LIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDE-------- 431 (506)
T ss_pred eEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccc--------
Confidence 788899999999999999998899999999999999999999999999999999999999988777776532
Q ss_pred cCCcceEEEEEEccCCCeEEEEeCCCcEEEEe
Q 038439 145 DAGSYFISAVCWKSDSPTMLTANSQGTIKVLV 176 (179)
Q Consensus 145 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd 176 (179)
...+.+++|.+.|.+|+.++.|=+|++++
T Consensus 432 ---~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 432 ---KKEVNSLSFDQSGTYLGIAGSDLQVYICK 460 (506)
T ss_pred ---cccceeEEEcCCCCeEEeecceeEEEEEe
Confidence 34699999999999999998876676665
No 61
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.93 E-value=2.4e-23 Score=139.15 Aligned_cols=132 Identities=13% Similarity=0.259 Sum_probs=112.1
Q ss_pred CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEeC-CCcee------------eecccCceeEEEEeeC-C
Q 038439 1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKYQ-STAPC------------VHGHKKAVSYVKFLSN-D 65 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~-~~~~~------------~~~~~~~i~~~~~~~~-~ 65 (179)
|.|..-.||+..+++....+. |+..|+++.|+.+| .++|+|. .++.. +...-..|.-+.|+|. .
T Consensus 83 GgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fshdg-tlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~ 161 (399)
T KOG0296|consen 83 GGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDG-TLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAH 161 (399)
T ss_pred CCCceEEEEEccCCcceeEecCCCCceEEEEEccCc-eEEEecCCCccEEEEEcccCceEEEeecccCceEEEEeccccc
Confidence 467889999999999777774 99999999999999 7888882 22222 3233455677889999 9
Q ss_pred eEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccc
Q 038439 66 ELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHR 133 (179)
Q Consensus 66 ~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~ 133 (179)
.|+.|+.||.+.+|.+.+....+.+.+|..++++=.|.|+|+.++++..||+|++||+.+++++....
T Consensus 162 illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~ 229 (399)
T KOG0296|consen 162 ILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKIT 229 (399)
T ss_pred EEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEec
Confidence 99999999999999999877888999999999999999999999999999999999999998876554
No 62
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.93 E-value=3.8e-25 Score=146.66 Aligned_cols=167 Identities=20% Similarity=0.330 Sum_probs=144.8
Q ss_pred CCCccEEEEEcCCceeEEeec---------CCCceeEEEEcCCCCeEEEEe-----------CCCcee--e-ecccCcee
Q 038439 1 MAYGKVKVWCTRQEASVLNID---------MKANICCVKYNPGSSNYIAKY-----------QSTAPC--V-HGHKKAVS 57 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~~~~~~~---------~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~--~-~~~~~~i~ 57 (179)
|-||.|.+||+-+|+..+.+. +..+|.|+.|+.|. ..+++| .++.++ + ++|+..|+
T Consensus 232 SvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDs-EMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt 310 (508)
T KOG0275|consen 232 SVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDS-EMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVT 310 (508)
T ss_pred cccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccH-HHhhccCcCCcEEEEEEecchHHHHhhhhhccCee
Confidence 469999999999988665542 57889999999998 567776 556666 3 48999999
Q ss_pred EEEEeeC-CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCC
Q 038439 58 YVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSS 136 (179)
Q Consensus 58 ~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~ 136 (179)
|+.|+.| ..+++++.|.++|+.-+.+++++..+++|.+.|+.+.|.++|..+++++.||+|++|+.++.+++.+++...
T Consensus 311 ~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~ 390 (508)
T KOG0275|consen 311 CLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLG 390 (508)
T ss_pred EEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCC
Confidence 9999999 999999999999999999999999999999999999999999999999999999999999999998887654
Q ss_pred CCCCCCcccCCcceEEEEEEcc-CCCeEEEEeCCCcEEEEeec
Q 038439 137 PDMDDTDEDAGSYFISAVCWKS-DSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 137 ~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~ 178 (179)
. ...|+++..-| +...++++...++++|.++.
T Consensus 391 ~----------d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q 423 (508)
T KOG0275|consen 391 T----------DYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ 423 (508)
T ss_pred C----------cccceeEEEcCCCCceEEEEcCCCeEEEEecc
Confidence 3 56788887776 55678888888899988764
No 63
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.92 E-value=9.6e-24 Score=143.99 Aligned_cols=166 Identities=15% Similarity=0.173 Sum_probs=140.9
Q ss_pred CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe-----------CCCcee-eecccCceeEEEEeeC-Ce
Q 038439 1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY-----------QSTAPC-VHGHKKAVSYVKFLSN-DE 66 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~-~~~~~~~i~~~~~~~~-~~ 66 (179)
|.|.++.++|....+.+..+. |...|+.+.|+|+....+... ....+. ...|..+|+.+..+|. .+
T Consensus 238 G~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeY 317 (506)
T KOG0289|consen 238 GEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEY 317 (506)
T ss_pred CCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcE
Confidence 568899999999999988886 788899999999875444443 122333 7889999999999999 99
Q ss_pred EEEecCCCcEEEEecCCCcceeeecCC--CCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcc
Q 038439 67 LASASTDSTLRLWDVKENLPVRTFRGH--MNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDE 144 (179)
Q Consensus 67 l~~~~~d~~v~iwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 144 (179)
|++++.|++..+.|++++..+...... .-.+++.+|+|||-.|.+|..|+.|++||+.+...+..+.
T Consensus 318 llsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fp----------- 386 (506)
T KOG0289|consen 318 LLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFP----------- 386 (506)
T ss_pred EEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCC-----------
Confidence 999999999999999999887766542 2358899999999999999999999999999887554433
Q ss_pred cCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439 145 DAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 145 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
+ |.++|..++|+.+|-+|++++.|+.|++|||+
T Consensus 387 g-ht~~vk~i~FsENGY~Lat~add~~V~lwDLR 419 (506)
T KOG0289|consen 387 G-HTGPVKAISFSENGYWLATAADDGSVKLWDLR 419 (506)
T ss_pred C-CCCceeEEEeccCceEEEEEecCCeEEEEEeh
Confidence 2 28899999999999999999999999999997
No 64
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.92 E-value=6.3e-24 Score=145.05 Aligned_cols=166 Identities=19% Similarity=0.277 Sum_probs=129.5
Q ss_pred CCccEEEEEcCCcee-----------EEeecCCCceeEEEEcCCCCeEEEEe---------------CCCc---ee--ee
Q 038439 2 AYGKVKVWCTRQEAS-----------VLNIDMKANICCVKYNPGSSNYIAKY---------------QSTA---PC--VH 50 (179)
Q Consensus 2 ~d~~i~vwd~~~~~~-----------~~~~~~~~~v~~~~~~~~~~~~~~~~---------------~~~~---~~--~~ 50 (179)
..+.|.|||+.+..- +.-..|+..-++++|++.....++++ ...+ +. +.
T Consensus 145 ~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~ 224 (422)
T KOG0264|consen 145 SSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFS 224 (422)
T ss_pred CCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEee
Confidence 567899999765321 12234667788899999765555555 1111 22 88
Q ss_pred cccCceeEEEEeeC--CeEEEecCCCcEEEEecC--CCcceeeecCCCCCeEEEEEeeC-CCEEEEeccCCcEEEEEcCC
Q 038439 51 GHKKAVSYVKFLSN--DELASASTDSTLRLWDVK--ENLPVRTFRGHMNEKNFVGLTVN-SEYIACGSESNEVYVYHKEI 125 (179)
Q Consensus 51 ~~~~~i~~~~~~~~--~~l~~~~~d~~v~iwd~~--~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~d~~v~vwd~~~ 125 (179)
+|+..|..++|++. .+|.+++.|+.+.|||.| +.++....++|.+.+.+++|+|. +..||+|+.|++|.+||+|+
T Consensus 225 ~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRn 304 (422)
T KOG0264|consen 225 GHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRN 304 (422)
T ss_pred cCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechh
Confidence 99999999999998 889999999999999999 56667778899999999999996 45578999999999999998
Q ss_pred CccccccccCCCCCCCCcccCCcceEEEEEEccCC-CeEEEEeCCCcEEEEeec
Q 038439 126 SKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDS-PTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~ 178 (179)
... ....+.. |...|.++.|+|.. ..|++++.|+.+.|||+.
T Consensus 305 L~~-~lh~~e~----------H~dev~~V~WSPh~etvLASSg~D~rl~vWDls 347 (422)
T KOG0264|consen 305 LNK-PLHTFEG----------HEDEVFQVEWSPHNETVLASSGTDRRLNVWDLS 347 (422)
T ss_pred ccc-CceeccC----------CCcceEEEEeCCCCCceeEecccCCcEEEEecc
Confidence 544 2222322 28899999999954 678888999999999985
No 65
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.1e-24 Score=157.44 Aligned_cols=167 Identities=16% Similarity=0.277 Sum_probs=134.7
Q ss_pred CCCccEEEEEcCC---ceeEEee-cCCCceeEEEEcCCCCeEEEEe-----------CCCcee--eecccCceeEEEEee
Q 038439 1 MAYGKVKVWCTRQ---EASVLNI-DMKANICCVKYNPGSSNYIAKY-----------QSTAPC--VHGHKKAVSYVKFLS 63 (179)
Q Consensus 1 ~~d~~i~vwd~~~---~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~--~~~~~~~i~~~~~~~ 63 (179)
+..|.|.+||+.. .+.+..+ +|...++++.|++..++++++| +..+.. +.+....|..+.|+|
T Consensus 107 s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp 186 (839)
T KOG0269|consen 107 STNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSP 186 (839)
T ss_pred cCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeecc
Confidence 4579999999987 3344445 4999999999999999999998 112222 556778899999999
Q ss_pred C--CeEEEecCCCcEEEEecCCC-cceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCC
Q 038439 64 N--DELASASTDSTLRLWDVKEN-LPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMD 140 (179)
Q Consensus 64 ~--~~l~~~~~d~~v~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~ 140 (179)
. ..|+++...|.+++||++.. ++...+..|.++|.++.|+|++.+||+|+.|+.|+|||..+++.........
T Consensus 187 ~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInT---- 262 (839)
T KOG0269|consen 187 GYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINT---- 262 (839)
T ss_pred CCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEee----
Confidence 8 88999999999999999974 5667888999999999999999999999999999999998766544333321
Q ss_pred CCcccCCcceEEEEEEccCCCe-EEEEeC--CCcEEEEeec
Q 038439 141 DTDEDAGSYFISAVCWKSDSPT-MLTANS--QGTIKVLVLA 178 (179)
Q Consensus 141 ~~~~~~~~~~i~~~~~~~~~~~-l~~~~~--dg~i~iwd~~ 178 (179)
..++.++.|-|..++ |++++. |-.|+|||++
T Consensus 263 -------iapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvr 296 (839)
T KOG0269|consen 263 -------IAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVR 296 (839)
T ss_pred -------cceeeeeeeccCccchhhhhhccccceEEEEeec
Confidence 568999999997665 455443 7789999985
No 66
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.92 E-value=1.2e-23 Score=137.54 Aligned_cols=166 Identities=15% Similarity=0.229 Sum_probs=138.8
Q ss_pred CCCccEEEEEcCCce-eEEee-cCCCceeEEEEcCCCCeEEEEe----------CCCcee--eecccCceeEEEEeeC--
Q 038439 1 MAYGKVKVWCTRQEA-SVLNI-DMKANICCVKYNPGSSNYIAKY----------QSTAPC--VHGHKKAVSYVKFLSN-- 64 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~-~~~~~-~~~~~v~~~~~~~~~~~~~~~~----------~~~~~~--~~~~~~~i~~~~~~~~-- 64 (179)
|.|..|.+|++.... -...+ .|.++|..+.|.+++..++.+| .+++.+ .++|..-++.+.-+.-
T Consensus 66 G~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~ 145 (338)
T KOG0265|consen 66 GSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGP 145 (338)
T ss_pred CCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCC
Confidence 579999999965432 22223 4899999999999999999988 566666 8889988888872222
Q ss_pred CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcc
Q 038439 65 DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDE 144 (179)
Q Consensus 65 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 144 (179)
.++.+++.|+++++||+++..+++++.. .-+++++.|...+..+.+|+-|+.|++||++..+......
T Consensus 146 ~lv~SgsdD~t~kl~D~R~k~~~~t~~~-kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~ls----------- 213 (338)
T KOG0265|consen 146 QLVCSGSDDGTLKLWDIRKKEAIKTFEN-KYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLS----------- 213 (338)
T ss_pred eEEEecCCCceEEEEeecccchhhcccc-ceeEEEEEecccccceeeccccCceeeeccccCcceEEee-----------
Confidence 5677899999999999999998888864 5678999999999999999999999999999888776544
Q ss_pred cCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439 145 DAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA 179 (179)
Q Consensus 145 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 179 (179)
+| ...|+.+..+|+|.++.+-+.|.++++||+++
T Consensus 214 Gh-~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp 247 (338)
T KOG0265|consen 214 GH-ADTITGLSLSRYGSFLLSNSMDNTVRVWDVRP 247 (338)
T ss_pred cc-cCceeeEEeccCCCccccccccceEEEEEecc
Confidence 22 77899999999999999999999999999875
No 67
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=7.6e-24 Score=155.48 Aligned_cols=168 Identities=19% Similarity=0.272 Sum_probs=143.1
Q ss_pred CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe----------CCCcee--eecccCceeEEEEeeC-Ce
Q 038439 1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY----------QSTAPC--VHGHKKAVSYVKFLSN-DE 66 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~----------~~~~~~--~~~~~~~i~~~~~~~~-~~ 66 (179)
|+|-.|+||++.+.+++.++- |-+-|..+.|++.-+.+++++ .+++++ +.+|..-|.|..|+|. ..
T Consensus 70 GDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDl 149 (1202)
T KOG0292|consen 70 GDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDL 149 (1202)
T ss_pred CCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccce
Confidence 689999999999999998885 889999999999988888887 566677 9999999999999998 99
Q ss_pred EEEecCCCcEEEEecCCCc-----------------------------ceeeecCCCCCeEEEEEeeCCCEEEEeccCCc
Q 038439 67 LASASTDSTLRLWDVKENL-----------------------------PVRTFRGHMNEKNFVGLTVNSEYIACGSESNE 117 (179)
Q Consensus 67 l~~~~~d~~v~iwd~~~~~-----------------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~ 117 (179)
++++|.|.+||+||+..-+ ..+.+.+|...|+-++|+|.-..|++|+.|+.
T Consensus 150 IVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRq 229 (1202)
T KOG0292|consen 150 IVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQ 229 (1202)
T ss_pred EEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcce
Confidence 9999999999999985310 11335678889999999999999999999999
Q ss_pred EEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439 118 VYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 118 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
|++|.+...+....-... +| ...|.++-|+|..+.+++.+.|+.|+|||+.
T Consensus 230 VKlWrmnetKaWEvDtcr---------gH-~nnVssvlfhp~q~lIlSnsEDksirVwDm~ 280 (1202)
T KOG0292|consen 230 VKLWRMNETKAWEVDTCR---------GH-YNNVSSVLFHPHQDLILSNSEDKSIRVWDMT 280 (1202)
T ss_pred eeEEEeccccceeehhhh---------cc-cCCcceEEecCccceeEecCCCccEEEEecc
Confidence 999998765543222222 22 7789999999999999999999999999985
No 68
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.92 E-value=4.8e-24 Score=140.43 Aligned_cols=177 Identities=15% Similarity=0.164 Sum_probs=141.3
Q ss_pred CCCccEEEEEcCCcee---EEeecCCCceeEEEEcCCCCeEEEEe----------CCCcee-----eecccCceeEEEEe
Q 038439 1 MAYGKVKVWCTRQEAS---VLNIDMKANICCVKYNPGSSNYIAKY----------QSTAPC-----VHGHKKAVSYVKFL 62 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~----------~~~~~~-----~~~~~~~i~~~~~~ 62 (179)
+.|++|+++|+.+... .+.++...+|.++.|+|.|..+++.. ++.++. -.+|++.|+++.++
T Consensus 191 srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys 270 (430)
T KOG0640|consen 191 SRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYS 270 (430)
T ss_pred cCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEec
Confidence 5799999999886543 34456778999999999996555444 334444 45799999999999
Q ss_pred eC-CeEEEecCCCcEEEEecCCCcceeeecC-C-CCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCC--
Q 038439 63 SN-DELASASTDSTLRLWDVKENLPVRTFRG-H-MNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSP-- 137 (179)
Q Consensus 63 ~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~-~-~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~-- 137 (179)
+. ++.+++|.||.|++||--+++++.++.. | .+.|.+..|..+|+|+++.+.|..+++|.+.+++++..+.-.+.
T Consensus 271 ~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tg 350 (430)
T KOG0640|consen 271 STGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTG 350 (430)
T ss_pred CCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCccc
Confidence 99 9999999999999999999999988853 4 45688899999999999999999999999999988776542211
Q ss_pred ------------------------------------CCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439 138 ------------------------------------DMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 138 ------------------------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
.......+ |.+.+..+.-+|.+.-+++++.|-..++|--+
T Consensus 351 rq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slg-Hn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 351 RQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLG-HNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred chhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccC-CCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence 01111223 37788999999999999999999999999643
No 69
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.92 E-value=6.4e-24 Score=139.85 Aligned_cols=146 Identities=19% Similarity=0.299 Sum_probs=122.7
Q ss_pred cCCCceeEEEEcCCCCeEEEEe----------------------------CCCcee---eecccCceeEEEEeeC-CeEE
Q 038439 21 DMKANICCVKYNPGSSNYIAKY----------------------------QSTAPC---VHGHKKAVSYVKFLSN-DELA 68 (179)
Q Consensus 21 ~~~~~v~~~~~~~~~~~~~~~~----------------------------~~~~~~---~~~~~~~i~~~~~~~~-~~l~ 68 (179)
.|++++.+.+|+||| .++++| ....|+ +..|..+|+++.|+|. ..|+
T Consensus 110 ~HK~~cR~aafs~DG-~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILi 188 (430)
T KOG0640|consen 110 SHKSPCRAAAFSPDG-SLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILI 188 (430)
T ss_pred ecccceeeeeeCCCC-cEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEE
Confidence 589999999999999 788888 122244 7789999999999999 9999
Q ss_pred EecCCCcEEEEecCCCcceeeec--CCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccC
Q 038439 69 SASTDSTLRLWDVKENLPVRTFR--GHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDA 146 (179)
Q Consensus 69 ~~~~d~~v~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 146 (179)
+++.|++|++||+......+.++ ....+|++++|+|.|.++++|..-..+++||+.+.++........ .
T Consensus 189 S~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~--------q- 259 (430)
T KOG0640|consen 189 SGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDD--------Q- 259 (430)
T ss_pred eccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccc--------c-
Confidence 99999999999998743333222 346789999999999999999999999999999988765443221 2
Q ss_pred CcceEEEEEEccCCCeEEEEeCCCcEEEEe
Q 038439 147 GSYFISAVCWKSDSPTMLTANSQGTIKVLV 176 (179)
Q Consensus 147 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd 176 (179)
|...|+++.+++.+++.++++.||.|++||
T Consensus 260 ht~ai~~V~Ys~t~~lYvTaSkDG~IklwD 289 (430)
T KOG0640|consen 260 HTGAITQVRYSSTGSLYVTASKDGAIKLWD 289 (430)
T ss_pred cccceeEEEecCCccEEEEeccCCcEEeec
Confidence 288999999999999999999999999998
No 70
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.92 E-value=6.3e-24 Score=142.04 Aligned_cols=145 Identities=19% Similarity=0.315 Sum_probs=130.0
Q ss_pred CCCceeEEEEcCCCCeEEEEe-----------CCCcee--eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCcce
Q 038439 22 MKANICCVKYNPGSSNYIAKY-----------QSTAPC--VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPV 87 (179)
Q Consensus 22 ~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~--~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~ 87 (179)
|.+.|.|+++.|.. ..+++| .+++.. +.+|...+..+++++- .++++++.|+.|+-||+...+.+
T Consensus 150 HlgWVr~vavdP~n-~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvI 228 (460)
T KOG0285|consen 150 HLGWVRSVAVDPGN-EWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVI 228 (460)
T ss_pred ccceEEEEeeCCCc-eeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhH
Confidence 78899999999986 677777 344444 8899999999999999 99999999999999999999999
Q ss_pred eeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEe
Q 038439 88 RTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTAN 167 (179)
Q Consensus 88 ~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 167 (179)
+.+.+|-+.|.+++.+|.-..|++|+.|..+++||+++...+..+. +| ...|.++.+.|-...+++|+
T Consensus 229 R~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~-----------GH-~~~V~~V~~~~~dpqvit~S 296 (460)
T KOG0285|consen 229 RHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLS-----------GH-TNPVASVMCQPTDPQVITGS 296 (460)
T ss_pred HHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEec-----------CC-CCcceeEEeecCCCceEEec
Confidence 9999999999999999999999999999999999999988776654 22 78899999999888899999
Q ss_pred CCCcEEEEeecC
Q 038439 168 SQGTIKVLVLAA 179 (179)
Q Consensus 168 ~dg~i~iwd~~~ 179 (179)
.|++|++||++.
T Consensus 297 ~D~tvrlWDl~a 308 (460)
T KOG0285|consen 297 HDSTVRLWDLRA 308 (460)
T ss_pred CCceEEEeeecc
Confidence 999999999863
No 71
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=2.8e-23 Score=136.12 Aligned_cols=175 Identities=15% Similarity=0.201 Sum_probs=133.8
Q ss_pred CCCccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe----------CCCcee-eecccCceeEEEEeeC-CeEE
Q 038439 1 MAYGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY----------QSTAPC-VHGHKKAVSYVKFLSN-DELA 68 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----------~~~~~~-~~~~~~~i~~~~~~~~-~~l~ 68 (179)
++||++++||+........+.++.++.+++|.++. ..++.+ +++... +..|..+|.|+.+.+. +.++
T Consensus 32 sWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~-~~~~G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vI 110 (323)
T KOG1036|consen 32 SWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADES-TIVTGGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVI 110 (323)
T ss_pred eccCcEEEEeccchhhhhheecCCceeeeeccCCc-eEEEeccCceEEEEEecCCcceeeccCCCceEEEEeeccCCeEE
Confidence 58999999999999888889999999999999865 555555 333333 7789999999999998 9999
Q ss_pred EecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccC------------C
Q 038439 69 SASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFS------------S 136 (179)
Q Consensus 69 ~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~------------~ 136 (179)
+|+.|++|++||.+.......+.. ...|.++.. .++.|++|+.+..+.+||+++.+...+.+.. .
T Consensus 111 sgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~p 187 (323)
T KOG1036|consen 111 SGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVP 187 (323)
T ss_pred EcccCccEEEEecccccccccccc-CceEEEEec--cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEec
Confidence 999999999999998666666653 447777766 5778999999999999999975433211100 0
Q ss_pred --C------------------C-----CCCCcccC--------CcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439 137 --P------------------D-----MDDTDEDA--------GSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA 179 (179)
Q Consensus 137 --~------------------~-----~~~~~~~~--------~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 179 (179)
. . ....+.-| --.+|++++|+|-.+.|++|+.||.|.+||+.+
T Consensus 188 n~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~ 263 (323)
T KOG1036|consen 188 NGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFN 263 (323)
T ss_pred CCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcc
Confidence 0 0 00011111 034789999999999999999999999999854
No 72
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.6e-22 Score=132.97 Aligned_cols=166 Identities=17% Similarity=0.194 Sum_probs=134.6
Q ss_pred CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe------------CCCcee--eecccCceeEEEEeeC-
Q 038439 1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY------------QSTAPC--VHGHKKAVSYVKFLSN- 64 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~------------~~~~~~--~~~~~~~i~~~~~~~~- 64 (179)
++|.+++|||..++++++++. ++..+..++|......++.+. .+.+.+ +.||...|+.++.+|-
T Consensus 33 s~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~ 112 (311)
T KOG1446|consen 33 SEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKD 112 (311)
T ss_pred cCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCC
Confidence 467899999999999999997 556788888876664555554 344555 8999999999999999
Q ss_pred CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCC--ccccccccCCCCCCCC
Q 038439 65 DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEIS--KPVTWHRFSSPDMDDT 142 (179)
Q Consensus 65 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~--~~~~~~~~~~~~~~~~ 142 (179)
..+++++.|++|++||++..++...+..... ..++|.|+|-++|++.....|++||+|+. .+...+.+....
T Consensus 113 d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~---- 186 (311)
T KOG1446|consen 113 DTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--PIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDND---- 186 (311)
T ss_pred CeEEecccCCeEEeeEecCCCCceEEecCCC--cceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCC----
Confidence 9999999999999999998777666653333 45899999999999998889999999984 445555443221
Q ss_pred cccCCcceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439 143 DEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVL 177 (179)
Q Consensus 143 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 177 (179)
....+.+.|+|||++|+.++..+.+++.|-
T Consensus 187 -----~~ew~~l~FS~dGK~iLlsT~~s~~~~lDA 216 (311)
T KOG1446|consen 187 -----EAEWTDLEFSPDGKSILLSTNASFIYLLDA 216 (311)
T ss_pred -----ccceeeeEEcCCCCEEEEEeCCCcEEEEEc
Confidence 567899999999999999999999998773
No 73
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=2.6e-23 Score=142.74 Aligned_cols=176 Identities=17% Similarity=0.248 Sum_probs=140.7
Q ss_pred CCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe-------------------CCCcee--eecccCceeEE
Q 038439 2 AYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY-------------------QSTAPC--VHGHKKAVSYV 59 (179)
Q Consensus 2 ~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~-------------------~~~~~~--~~~~~~~i~~~ 59 (179)
-.|.|++|.+.+|+.+..+. |-..|+++.|+.||..++.+| .+.+++ +.+|+-+|+++
T Consensus 101 i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl 180 (476)
T KOG0646|consen 101 ISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDL 180 (476)
T ss_pred ccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEE
Confidence 45899999999999988886 889999999999997777776 234455 88999999999
Q ss_pred EEeeC---CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCcc--c--ccc
Q 038439 60 KFLSN---DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKP--V--TWH 132 (179)
Q Consensus 60 ~~~~~---~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~--~--~~~ 132 (179)
...+. ..++|+|.|.++++||+..+..+.++. ....+.+++..|-++.++.|+++|.|.+.++..... . ...
T Consensus 181 ~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k 259 (476)
T KOG0646|consen 181 QIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQK 259 (476)
T ss_pred EecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCCcceEEeeehhcCCccccccccc
Confidence 88766 789999999999999999999988886 467789999999999999999999999988765331 1 000
Q ss_pred -ccCCCCCCCCcccC-CcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439 133 -RFSSPDMDDTDEDA-GSYFISAVCWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 133 -~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
..........+.+| +...|+|++.+-||..|++|+.||.++|||+.
T Consensus 260 ~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~ 307 (476)
T KOG0646|consen 260 GRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIY 307 (476)
T ss_pred ccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecc
Confidence 01111112222233 12489999999999999999999999999975
No 74
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=2.2e-23 Score=143.72 Aligned_cols=164 Identities=19% Similarity=0.247 Sum_probs=135.2
Q ss_pred CCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEeCCC-----------c-ee-eecccCceeEEEEeeC--C
Q 038439 2 AYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKYQST-----------A-PC-VHGHKKAVSYVKFLSN--D 65 (179)
Q Consensus 2 ~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~-----------~-~~-~~~~~~~i~~~~~~~~--~ 65 (179)
+.|.|+|+|..+...+..+. |+.++..+.|+|.+..+++.|..+ . .+ +.+|+..|.|.+|+|. .
T Consensus 88 ~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~h 167 (487)
T KOG0310|consen 88 ESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDH 167 (487)
T ss_pred CcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCe
Confidence 46899999977655666664 999999999999998898888211 1 22 8899999999999998 5
Q ss_pred eEEEecCCCcEEEEecCCC-cceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcc
Q 038439 66 ELASASTDSTLRLWDVKEN-LPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDE 144 (179)
Q Consensus 66 ~l~~~~~d~~v~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 144 (179)
.++||+.||.|++||.+.. ..+.++. |..+|..+.+-|.|..|++++. +.|++||+-+|........
T Consensus 168 ivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~---------- 235 (487)
T KOG0310|consen 168 IVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMF---------- 235 (487)
T ss_pred EEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhh----------
Confidence 7999999999999999986 5666664 8899999999999999998874 6799999997655433222
Q ss_pred cCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439 145 DAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 145 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
. |...|+|+++..++..|++++-|+.+++||+.
T Consensus 236 ~-H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t 268 (487)
T KOG0310|consen 236 N-HNKTVTCLRLASDSTRLLSGSLDRHVKVFDTT 268 (487)
T ss_pred c-ccceEEEEEeecCCceEeecccccceEEEEcc
Confidence 1 26689999999999999999999999999964
No 75
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.92 E-value=1.2e-24 Score=144.36 Aligned_cols=146 Identities=20% Similarity=0.348 Sum_probs=126.4
Q ss_pred cCCCceeEEEEcCCCCeEEEEe-----------CCCc---ee-------eecccCceeEEEEeeC-CeEEEecCCCcEEE
Q 038439 21 DMKANICCVKYNPGSSNYIAKY-----------QSTA---PC-------VHGHKKAVSYVKFLSN-DELASASTDSTLRL 78 (179)
Q Consensus 21 ~~~~~v~~~~~~~~~~~~~~~~-----------~~~~---~~-------~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~i 78 (179)
..++.+.|..|+|||+ ++++| .+++ .+ +--+..+|.|+.|+.| ..+++|+.||.|++
T Consensus 211 g~KSh~EcA~FSPDgq-yLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKv 289 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQ-YLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKV 289 (508)
T ss_pred ccccchhheeeCCCCc-eEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEE
Confidence 3567789999999995 55555 1121 11 3346789999999999 99999999999999
Q ss_pred EecCCCcceeeec-CCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEc
Q 038439 79 WDVKENLPVRTFR-GHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWK 157 (179)
Q Consensus 79 wd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 157 (179)
|.++++.+++.|. .|...|+++.|+.|+..+++++.|.++++.-+++|+.+..++ +| ...|+...|.
T Consensus 290 Wri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfr-----------GH-sSyvn~a~ft 357 (508)
T KOG0275|consen 290 WRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFR-----------GH-SSYVNEATFT 357 (508)
T ss_pred EEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhc-----------Cc-cccccceEEc
Confidence 9999999999997 799999999999999999999999999999999999987765 22 8889999999
Q ss_pred cCCCeEEEEeCCCcEEEEeecC
Q 038439 158 SDSPTMLTANSQGTIKVLVLAA 179 (179)
Q Consensus 158 ~~~~~l~~~~~dg~i~iwd~~~ 179 (179)
++|..+++++.||+|++|+..+
T Consensus 358 ~dG~~iisaSsDgtvkvW~~Kt 379 (508)
T KOG0275|consen 358 DDGHHIISASSDGTVKVWHGKT 379 (508)
T ss_pred CCCCeEEEecCCccEEEecCcc
Confidence 9999999999999999999753
No 76
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.91 E-value=4e-24 Score=142.80 Aligned_cols=158 Identities=18% Similarity=0.319 Sum_probs=133.7
Q ss_pred CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe-----------CCCcee--eecccCceeEEEEeeCCe
Q 038439 1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY-----------QSTAPC--VHGHKKAVSYVKFLSNDE 66 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~--~~~~~~~i~~~~~~~~~~ 66 (179)
..|++|+|||.++..+++.+. |.+.|.|+.|.. .++++| ++++++ +..|...|..+.|+. ++
T Consensus 214 lrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~---rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~n-g~ 289 (499)
T KOG0281|consen 214 LRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDE---RVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSN-GY 289 (499)
T ss_pred cccCceEEeccccHHHHHhhhcCCCcEEeeeccc---eEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeC-CE
Confidence 369999999999999888874 999999999975 466666 778888 888999999999875 79
Q ss_pred EEEecCCCcEEEEecCCCc---ceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCc
Q 038439 67 LASASTDSTLRLWDVKENL---PVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTD 143 (179)
Q Consensus 67 l~~~~~d~~v~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~ 143 (179)
++++|.|.++.+||+.... +.+.+.+|...|+.+.|+ .++|++++.|++|++|+..+++.+..+.-
T Consensus 290 mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~g--------- 358 (499)
T KOG0281|consen 290 MVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNG--------- 358 (499)
T ss_pred EEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhhc---------
Confidence 9999999999999998754 334567899999999984 56999999999999999999998876532
Q ss_pred ccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439 144 EDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 144 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
| ...|-|+.+ .++++++|+.|.+|++||++
T Consensus 359 --H-kRGIAClQY--r~rlvVSGSSDntIRlwdi~ 388 (499)
T KOG0281|consen 359 --H-KRGIACLQY--RDRLVVSGSSDNTIRLWDIE 388 (499)
T ss_pred --c-cccceehhc--cCeEEEecCCCceEEEEecc
Confidence 2 667877766 68999999999999999975
No 77
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.91 E-value=4.9e-23 Score=132.94 Aligned_cols=152 Identities=18% Similarity=0.211 Sum_probs=125.5
Q ss_pred EEeecCCCceeEEEEcCCCCeEEEEe----------CCCcee--eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCC
Q 038439 17 VLNIDMKANICCVKYNPGSSNYIAKY----------QSTAPC--VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKE 83 (179)
Q Consensus 17 ~~~~~~~~~v~~~~~~~~~~~~~~~~----------~~~~~~--~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~ 83 (179)
+....|..+++.+.|+.+|+.++.++ .+++.+ +.+|++.|+|+...-+ ..+++|+.|.++++||+.+
T Consensus 4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~t 83 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVET 83 (327)
T ss_pred cccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCC
Confidence 33345899999999999998888888 456777 8999999999999888 9999999999999999998
Q ss_pred Cccee-----------------------------------------------------eecCCCCCeEEEEEeeCCCEEE
Q 038439 84 NLPVR-----------------------------------------------------TFRGHMNEKNFVGLTVNSEYIA 110 (179)
Q Consensus 84 ~~~~~-----------------------------------------------------~~~~~~~~v~~~~~~~~~~~~~ 110 (179)
++++. .+..+.+.++.+-|.|-+++|+
T Consensus 84 Gk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii 163 (327)
T KOG0643|consen 84 GKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETII 163 (327)
T ss_pred CcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEE
Confidence 74322 2233445677788999999999
Q ss_pred EeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439 111 CGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA 179 (179)
Q Consensus 111 ~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 179 (179)
+|.+||.|..||+++++....-. . . |...|+.++++|+..++++++.|.+-++||+++
T Consensus 164 ~Ghe~G~is~~da~~g~~~v~s~-~---------~-h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~t 221 (327)
T KOG0643|consen 164 AGHEDGSISIYDARTGKELVDSD-E---------E-HSSKINDLQFSRDRTYFITGSKDTTAKLVDVRT 221 (327)
T ss_pred EecCCCcEEEEEcccCceeeech-h---------h-hccccccccccCCcceEEecccCccceeeeccc
Confidence 99999999999999986543221 1 1 277899999999999999999999999999764
No 78
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.91 E-value=7.8e-23 Score=137.43 Aligned_cols=164 Identities=19% Similarity=0.251 Sum_probs=133.8
Q ss_pred CCCccEEEEEcCCceeEEee-cCCCceeEEEEcCCCCe---EEEEe----------CCCcee------eecccCceeEEE
Q 038439 1 MAYGKVKVWCTRQEASVLNI-DMKANICCVKYNPGSSN---YIAKY----------QSTAPC------VHGHKKAVSYVK 60 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~---~~~~~----------~~~~~~------~~~~~~~i~~~~ 60 (179)
++||.+++||.. |+..+.+ .|.++|.+++|.-..+. +++++ +.++.. ..+|.+.|.+++
T Consensus 122 sYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVs 200 (423)
T KOG0313|consen 122 SYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVS 200 (423)
T ss_pred ecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEE
Confidence 479999999965 5555555 59999998888543322 55555 222221 459999999999
Q ss_pred EeeC-CeEEEecCCCcEEEEecCC-------------------------CcceeeecCCCCCeEEEEEeeCCCEEEEecc
Q 038439 61 FLSN-DELASASTDSTLRLWDVKE-------------------------NLPVRTFRGHMNEKNFVGLTVNSEYIACGSE 114 (179)
Q Consensus 61 ~~~~-~~l~~~~~d~~v~iwd~~~-------------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 114 (179)
..++ ..+++||.|.++.+|+... +.++.++.+|..+|.++.|++ ...+++++.
T Consensus 201 v~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~Sw 279 (423)
T KOG0313|consen 201 VDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSW 279 (423)
T ss_pred ecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecc
Confidence 9999 9999999999999999321 135677889999999999998 678999999
Q ss_pred CCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439 115 SNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA 179 (179)
Q Consensus 115 d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 179 (179)
|.+|+.||+.+++.+..... ...++++..+|..++|++|+.|..|++||.++
T Consensus 280 DHTIk~WDletg~~~~~~~~-------------~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~ 331 (423)
T KOG0313|consen 280 DHTIKVWDLETGGLKSTLTT-------------NKSLNCISYSPLSKLLASGSSDRHIRLWDPRT 331 (423)
T ss_pred cceEEEEEeecccceeeeec-------------CcceeEeecccccceeeecCCCCceeecCCCC
Confidence 99999999999998877654 66799999999999999999999999999874
No 79
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=7.4e-24 Score=143.93 Aligned_cols=165 Identities=18% Similarity=0.318 Sum_probs=127.2
Q ss_pred CCccEEEEEcCCceeEEeecCC--CceeEEEEcCCCCeEEEEe--------------------------------CCCce
Q 038439 2 AYGKVKVWCTRQEASVLNIDMK--ANICCVKYNPGSSNYIAKY--------------------------------QSTAP 47 (179)
Q Consensus 2 ~d~~i~vwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~--------------------------------~~~~~ 47 (179)
.|..+.+||+.++.+...+.+. ..+.+++|.|||..+++.+ ..++.
T Consensus 289 ~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~ 368 (519)
T KOG0293|consen 289 FDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKY 368 (519)
T ss_pred chHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcE
Confidence 4667899999999998888755 7799999999996655554 11111
Q ss_pred e---------------------eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEE--Ee
Q 038439 48 C---------------------VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVG--LT 103 (179)
Q Consensus 48 ~---------------------~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~ 103 (179)
+ +..-..+|+++..+.+ .++++.-.+..+++||++..+.++.+.+|...-.-+. |-
T Consensus 369 vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFg 448 (519)
T KOG0293|consen 369 VLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFG 448 (519)
T ss_pred EEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccC
Confidence 1 1112346778888888 6677777788899999998888888988876544443 33
Q ss_pred e-CCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEcc-CCCeEEEEeCCCcEEEEeec
Q 038439 104 V-NSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKS-DSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 104 ~-~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~ 178 (179)
- +..++++|++|+.|+||+..+++++..+. +| ...|++++|+| +..++|++++||+|+||-..
T Consensus 449 g~~~~fiaSGSED~kvyIWhr~sgkll~~Ls-----------GH-s~~vNcVswNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 449 GGNDKFIASGSEDSKVYIWHRISGKLLAVLS-----------GH-SKTVNCVSWNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred CCCcceEEecCCCceEEEEEccCCceeEeec-----------CC-cceeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence 2 45789999999999999999999987754 22 77899999999 56789999999999999764
No 80
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=2.1e-22 Score=131.89 Aligned_cols=176 Identities=20% Similarity=0.257 Sum_probs=128.4
Q ss_pred CCCccEEEEEcCC-ceeEE--eecCCCceeEEEEcCCCCeEEEEe----------CCCcee-eecccCceeEEEEeeC--
Q 038439 1 MAYGKVKVWCTRQ-EASVL--NIDMKANICCVKYNPGSSNYIAKY----------QSTAPC-VHGHKKAVSYVKFLSN-- 64 (179)
Q Consensus 1 ~~d~~i~vwd~~~-~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~----------~~~~~~-~~~~~~~i~~~~~~~~-- 64 (179)
|.||+|++|+++. +..+- ...+.++|.+++|+.+|...++.+ .+++.. +..|.++|..++|-+.
T Consensus 47 SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~ 126 (347)
T KOG0647|consen 47 SWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMN 126 (347)
T ss_pred ccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeeeeeecccceeEEEEecCCC
Confidence 6899999999987 34332 235899999999999997777766 344444 7889999999999988
Q ss_pred -CeEEEecCCCcEEEEecCCCcceeeecC-------------------------------------C----CCCeEEEEE
Q 038439 65 -DELASASTDSTLRLWDVKENLPVRTFRG-------------------------------------H----MNEKNFVGL 102 (179)
Q Consensus 65 -~~l~~~~~d~~v~iwd~~~~~~~~~~~~-------------------------------------~----~~~v~~~~~ 102 (179)
..|+|||.|++|+.||.+...++.++.- + .-.+++++.
T Consensus 127 ~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~ 206 (347)
T KOG0647|consen 127 YQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVAC 206 (347)
T ss_pred cceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEE
Confidence 4899999999999999998654433321 1 114566777
Q ss_pred eeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439 103 TVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVL 177 (179)
Q Consensus 103 ~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 177 (179)
..|...++.|+-+|.+.+..+..+.+...+.+.-|........ .-..|++++|+|....|++++.||++.+||-
T Consensus 207 f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~-~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDk 280 (347)
T KOG0647|consen 207 FQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVND-DVYAVNSIAFHPVHGTLVTAGSDGTFSFWDK 280 (347)
T ss_pred EecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCC-ceEEecceEeecccceEEEecCCceEEEecc
Confidence 7776666777777777777776654444444443322111111 1346889999999999999999999999984
No 81
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=2.6e-23 Score=143.40 Aligned_cols=159 Identities=16% Similarity=0.246 Sum_probs=132.1
Q ss_pred cEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe---------C-CCcee---eecccCceeEEEEeeC--CeEE
Q 038439 5 KVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY---------Q-STAPC---VHGHKKAVSYVKFLSN--DELA 68 (179)
Q Consensus 5 ~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~---------~-~~~~~---~~~~~~~i~~~~~~~~--~~l~ 68 (179)
.+.||+..+....+.+. .+..+.++.|-.|| .++++| + ..+.+ +.+|+.++..+.|+|. ..++
T Consensus 49 rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG-~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~ 127 (487)
T KOG0310|consen 49 RVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDG-RLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLV 127 (487)
T ss_pred EEEEEecchhhhhhhHHhhccceeEEEeecCC-eEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEE
Confidence 57788887777777664 78899999999999 788877 1 11112 7899999999999999 6788
Q ss_pred EecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeC-CCEEEEeccCCcEEEEEcCCC-ccccccccCCCCCCCCcccC
Q 038439 69 SASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVN-SEYIACGSESNEVYVYHKEIS-KPVTWHRFSSPDMDDTDEDA 146 (179)
Q Consensus 69 ~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~d~~v~vwd~~~~-~~~~~~~~~~~~~~~~~~~~ 146 (179)
+|+.|+.+++||+.+......+.+|...|++.+|+|- +..+++|+.||.|++||.+.. ..+.++..
T Consensus 128 s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnh------------ 195 (487)
T KOG0310|consen 128 SGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNH------------ 195 (487)
T ss_pred ecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecC------------
Confidence 9999999999999998865688899999999999996 557899999999999999987 44444433
Q ss_pred CcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439 147 GSYFISAVCWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 147 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
+.+|..+.+-|.|..+++++. +.++|||+-
T Consensus 196 -g~pVe~vl~lpsgs~iasAgG-n~vkVWDl~ 225 (487)
T KOG0310|consen 196 -GCPVESVLALPSGSLIASAGG-NSVKVWDLT 225 (487)
T ss_pred -CCceeeEEEcCCCCEEEEcCC-CeEEEEEec
Confidence 778999999999998888775 479999985
No 82
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.91 E-value=2.1e-22 Score=134.72 Aligned_cols=150 Identities=15% Similarity=0.223 Sum_probs=128.2
Q ss_pred EEee-cCCCceeEEEEcCCCCeEEEEe-----------CCCcee--eecccCceeEEEEeeC-CeEEEecCCCcEEEEec
Q 038439 17 VLNI-DMKANICCVKYNPGSSNYIAKY-----------QSTAPC--VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDV 81 (179)
Q Consensus 17 ~~~~-~~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~--~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~ 81 (179)
+..| .|+.+|.+++.+|+. +++++| .++... +.+|+..|+++.|+.+ .+|+||..+|.|+||+.
T Consensus 57 ~~tF~~H~~svFavsl~P~~-~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~ 135 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHPNN-NLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV 135 (399)
T ss_pred eeehhhcCCceEEEEeCCCC-ceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence 3344 499999999999955 788887 344444 8999999999999999 99999999999999999
Q ss_pred CCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCC
Q 038439 82 KENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSP 161 (179)
Q Consensus 82 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 161 (179)
.++.....+...-..+.=+.|+|.+..|+.|+.||.+.+|.+.+....+.+. +| ..++++-.|.|+|+
T Consensus 136 stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~-----------Gh-~~~ct~G~f~pdGK 203 (399)
T KOG0296|consen 136 STGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMS-----------GH-NSPCTCGEFIPDGK 203 (399)
T ss_pred ccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEec-----------CC-CCCcccccccCCCc
Confidence 9998887776556677889999999999999999999999999865544433 22 77899999999999
Q ss_pred eEEEEeCCCcEEEEeecC
Q 038439 162 TMLTANSQGTIKVLVLAA 179 (179)
Q Consensus 162 ~l~~~~~dg~i~iwd~~~ 179 (179)
.++++..||+|++||+.+
T Consensus 204 r~~tgy~dgti~~Wn~kt 221 (399)
T KOG0296|consen 204 RILTGYDDGTIIVWNPKT 221 (399)
T ss_pred eEEEEecCceEEEEecCC
Confidence 999999999999999864
No 83
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=4.7e-23 Score=137.94 Aligned_cols=164 Identities=15% Similarity=0.249 Sum_probs=126.8
Q ss_pred CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe-------------------------------------
Q 038439 1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY------------------------------------- 42 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~------------------------------------- 42 (179)
|-||.|+|||+.+.+++.++. |.+.|..+++.. + .++.+|
T Consensus 86 s~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~-~-~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~Fa 163 (433)
T KOG0268|consen 86 SCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ-T-SFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFA 163 (433)
T ss_pred ccCceEEEEehhhhhhhheeecccCceeeEEecc-c-ceEEecCCcceeeeeccCCcceeeecccccccccccccccccc
Confidence 469999999999999999987 778999999987 2 566666
Q ss_pred CCCcee-------------eecccCceeEEEEeeC--CeEEEecCCCcEEEEecCCCcce--------------------
Q 038439 43 QSTAPC-------------VHGHKKAVSYVKFLSN--DELASASTDSTLRLWDVKENLPV-------------------- 87 (179)
Q Consensus 43 ~~~~~~-------------~~~~~~~i~~~~~~~~--~~l~~~~~d~~v~iwd~~~~~~~-------------------- 87 (179)
.-|+.+ +.=....|.++.|+|. ..|+++..|+.|.+||+++..++
T Consensus 164 TcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafn 243 (433)
T KOG0268|consen 164 TCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFN 243 (433)
T ss_pred ccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCccccc
Confidence 011111 1112345677888888 77888889999999999876433
Q ss_pred ----------------------eeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCccc
Q 038439 88 ----------------------RTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDED 145 (179)
Q Consensus 88 ----------------------~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 145 (179)
..+++|.+.|.+++|+|.|+.|++|+.|.+|+||..+.+.....+....
T Consensus 244 F~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkR--------- 314 (433)
T KOG0268|consen 244 FVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKR--------- 314 (433)
T ss_pred eeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhh---------
Confidence 2344577789999999999999999999999999998765544333221
Q ss_pred CCcceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439 146 AGSYFISAVCWKSDSPTMLTANSQGTIKVLVL 177 (179)
Q Consensus 146 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 177 (179)
-..|.++.|+.|.+++++|+.|+.|++|.-
T Consensus 315 --Mq~V~~Vk~S~Dskyi~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 315 --MQHVFCVKYSMDSKYIISGSDDGNVRLWKA 344 (433)
T ss_pred --hheeeEEEEeccccEEEecCCCcceeeeec
Confidence 346999999999999999999999999964
No 84
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.91 E-value=1e-22 Score=147.91 Aligned_cols=160 Identities=17% Similarity=0.269 Sum_probs=134.1
Q ss_pred CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe-----------CCCcee--eecccCceeEEEEeeCCe
Q 038439 1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY-----------QSTAPC--VHGHKKAVSYVKFLSNDE 66 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~--~~~~~~~i~~~~~~~~~~ 66 (179)
|.|.++++||..++++...+. |.+.|.++...+. +++.| .++..+ +.+|..+|.++... ..+
T Consensus 268 S~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~---~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~-~~~ 343 (537)
T KOG0274|consen 268 STDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPF---LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD-EPL 343 (537)
T ss_pred ecCCcEEeEecCCCcEEEEecCCCceEEEEEccCc---eEeeccCCceEEEEeccCcceEEEeccccccEEEEEec-CCE
Confidence 469999999999999999997 8889999988763 34443 556666 66699999999887 589
Q ss_pred EEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCC-ccccccccCCCCCCCCccc
Q 038439 67 LASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEIS-KPVTWHRFSSPDMDDTDED 145 (179)
Q Consensus 67 l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~-~~~~~~~~~~~~~~~~~~~ 145 (179)
+++|+.|++|++||+.+++++..+.+|...|.++.+.+. ..+++|+.|+.|++||+++. +++..+..
T Consensus 344 lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~----------- 411 (537)
T KOG0274|consen 344 LVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQG----------- 411 (537)
T ss_pred EEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcC-----------
Confidence 999999999999999999999999999999999987654 88999999999999999999 77766542
Q ss_pred CCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439 146 AGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA 179 (179)
Q Consensus 146 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 179 (179)
|..-+..+ ...++.|++++.|+.|++||.++
T Consensus 412 -h~~~v~~l--~~~~~~Lvs~~aD~~Ik~WD~~~ 442 (537)
T KOG0274|consen 412 -HTSLVSSL--LLRDNFLVSSSADGTIKLWDAEE 442 (537)
T ss_pred -Cccccccc--ccccceeEeccccccEEEeeccc
Confidence 14445444 34688999999999999999753
No 85
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=3e-22 Score=145.71 Aligned_cols=168 Identities=11% Similarity=0.153 Sum_probs=134.7
Q ss_pred CCCccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe-----------CCCcee-eecccCceeEEEEeeC-CeE
Q 038439 1 MAYGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY-----------QSTAPC-VHGHKKAVSYVKFLSN-DEL 67 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~-~~~~~~~i~~~~~~~~-~~l 67 (179)
|-|.+|+||++...++++.|.|.+-|+|++|+|...++++.| ...+.+ ...-..-|++++|.|+ +..
T Consensus 387 SMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~a 466 (712)
T KOG0283|consen 387 SMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGA 466 (712)
T ss_pred cccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceE
Confidence 459999999999999999999999999999999888899988 122222 4444578999999999 899
Q ss_pred EEecCCCcEEEEecCCCcceeeecC--C------CCCeEEEEEeeC-CCEEEEeccCCcEEEEEcCCCccccccccCCCC
Q 038439 68 ASASTDSTLRLWDVKENLPVRTFRG--H------MNEKNFVGLTVN-SEYIACGSESNEVYVYHKEISKPVTWHRFSSPD 138 (179)
Q Consensus 68 ~~~~~d~~v~iwd~~~~~~~~~~~~--~------~~~v~~~~~~~~-~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~ 138 (179)
+.|+.+|..++|+....+....+.. + ...|+.+.|.|. ...+++.+.|..|+|+|.+..+++..++-...
T Consensus 467 vIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n- 545 (712)
T KOG0283|consen 467 VIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRN- 545 (712)
T ss_pred EEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhccccc-
Confidence 9999999999999987665543321 1 226999999984 44688889999999999988888776653211
Q ss_pred CCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439 139 MDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 139 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
...-....|+.||++|++++.|..|++|++.
T Consensus 546 ---------~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 546 ---------TSSQISASFSSDGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred ---------CCcceeeeEccCCCEEEEeecCceEEEEeCC
Confidence 2233557789999999999999999999963
No 86
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.90 E-value=2.1e-22 Score=129.58 Aligned_cols=166 Identities=13% Similarity=0.182 Sum_probs=128.8
Q ss_pred CCCccEEEEEcCCceeEEee---cCCCceeEEEEcCCCCeEEEEe-----------CCCcee-eecccCceeEEEEeeC-
Q 038439 1 MAYGKVKVWCTRQEASVLNI---DMKANICCVKYNPGSSNYIAKY-----------QSTAPC-VHGHKKAVSYVKFLSN- 64 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~-~~~~~~~i~~~~~~~~- 64 (179)
+.|+++.+|+++..+..+.. .|.+.|-.++|+|..+.++++. +.++++ ....++.=..+.|+|+
T Consensus 39 s~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g 118 (313)
T KOG1407|consen 39 SFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENINITWSPDG 118 (313)
T ss_pred ccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcceEEEEcCCC
Confidence 46899999999887655554 3778899999999887777776 444444 2222222335678888
Q ss_pred CeEEEecCCCcEEEEecCCC-----------------------------------------cceeeecCCCCCeEEEEEe
Q 038439 65 DELASASTDSTLRLWDVKEN-----------------------------------------LPVRTFRGHMNEKNFVGLT 103 (179)
Q Consensus 65 ~~l~~~~~d~~v~iwd~~~~-----------------------------------------~~~~~~~~~~~~v~~~~~~ 103 (179)
++++.++.|..|...|.++. +++..++.|.....|+.|+
T Consensus 119 ~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~ 198 (313)
T KOG1407|consen 119 EYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFD 198 (313)
T ss_pred CEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEEC
Confidence 88888888888888777653 4567778899999999999
Q ss_pred eCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439 104 VNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 104 ~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
|+|++||+|+.|..+.+||+...-++..+... .-+|..++|+.+|++||+++.|..|-|=+++
T Consensus 199 p~GryfA~GsADAlvSLWD~~ELiC~R~isRl------------dwpVRTlSFS~dg~~lASaSEDh~IDIA~ve 261 (313)
T KOG1407|consen 199 PDGRYFATGSADALVSLWDVDELICERCISRL------------DWPVRTLSFSHDGRMLASASEDHFIDIAEVE 261 (313)
T ss_pred CCCceEeeccccceeeccChhHhhhheeeccc------------cCceEEEEeccCcceeeccCccceEEeEecc
Confidence 99999999999999999999875555443321 6689999999999999999999988775544
No 87
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.90 E-value=1.1e-21 Score=142.56 Aligned_cols=162 Identities=20% Similarity=0.266 Sum_probs=139.2
Q ss_pred CCCccEEEEEcCCceeEEe-ec-CCCceeEEEEcCCCCeEEEEe-----------CCCcee--eecccCceeEEEEeeCC
Q 038439 1 MAYGKVKVWCTRQEASVLN-ID-MKANICCVKYNPGSSNYIAKY-----------QSTAPC--VHGHKKAVSYVKFLSND 65 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~~~~~-~~-~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~--~~~~~~~i~~~~~~~~~ 65 (179)
+.|++|++||..++..+.. +. |.+.|.++++..-+ .+++.| .+++++ +.+|...|.++...+ .
T Consensus 225 s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~-~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~-~ 302 (537)
T KOG0274|consen 225 SDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGG-DKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDP-F 302 (537)
T ss_pred CCCceeEEeecccceEEEeeccCCCCCceeEEEecCC-CEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccC-c
Confidence 4688999999999988777 64 99999999998744 555555 566777 889999999987654 5
Q ss_pred eEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCccc
Q 038439 66 ELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDED 145 (179)
Q Consensus 66 ~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 145 (179)
.+++|+.|.+|++|++.++..+..+.+|..+|+++..+ +.++++|+.|+.|++||+.+++++..+.-
T Consensus 303 ~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~g----------- 369 (537)
T KOG0274|consen 303 LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSG----------- 369 (537)
T ss_pred eEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecC-----------
Confidence 77788999999999999999999999999999999997 88999999999999999999998877652
Q ss_pred CCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439 146 AGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA 179 (179)
Q Consensus 146 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 179 (179)
|...|.++.+.+. +.+++|+.|+.|++||+++
T Consensus 370 -H~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~ 401 (537)
T KOG0274|consen 370 -HTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRT 401 (537)
T ss_pred -CcceEEEEEecCc-ceEEeeeeccceEeecCCc
Confidence 2889999988655 8899999999999999874
No 88
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=6e-22 Score=145.61 Aligned_cols=168 Identities=16% Similarity=0.156 Sum_probs=136.6
Q ss_pred CCCccEEEEEcCCceeEEee-cCCCceeEEEEcCCCCeEEEEe-----------CCCcee-eecccCceeEEEEeeC-Ce
Q 038439 1 MAYGKVKVWCTRQEASVLNI-DMKANICCVKYNPGSSNYIAKY-----------QSTAPC-VHGHKKAVSYVKFLSN-DE 66 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~-~~~~~~~i~~~~~~~~-~~ 66 (179)
+.+++|.+|...+++.--.+ ...-++++++|+-+|..+++.+ +..... +.+|.++|.++.|+|. .+
T Consensus 73 s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~f 152 (933)
T KOG1274|consen 73 SEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNF 152 (933)
T ss_pred eccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCE
Confidence 46788999988887755333 4677899999999995555554 122222 8899999999999999 99
Q ss_pred EEEecCCCcEEEEecCCCcceeeecCC--------CCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCC
Q 038439 67 LASASTDSTLRLWDVKENLPVRTFRGH--------MNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPD 138 (179)
Q Consensus 67 l~~~~~d~~v~iwd~~~~~~~~~~~~~--------~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~ 138 (179)
|++.+.||.|++||+.++.+..++..- ...+..++|+|+|..++..+.|+.|++|+..+.+....+.....
T Consensus 153 LAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~- 231 (933)
T KOG1274|consen 153 LAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLS- 231 (933)
T ss_pred EEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeeccccc-
Confidence 999999999999999998776665431 34566789999988888889999999999999888776665432
Q ss_pred CCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439 139 MDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 139 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
...+..+.|+|+|+|||+++.+|.|.|||..
T Consensus 232 ---------ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~ 262 (933)
T KOG1274|consen 232 ---------SSKFSDLQWSPNGKYIAASTLDGQILVWNVD 262 (933)
T ss_pred ---------ccceEEEEEcCCCcEEeeeccCCcEEEEecc
Confidence 4559999999999999999999999999986
No 89
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.6e-21 Score=123.72 Aligned_cols=117 Identities=22% Similarity=0.273 Sum_probs=98.8
Q ss_pred eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCcceeeecC-------CCCCeEEEEEeeCCCEEEEeccCCcEEE
Q 038439 49 VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRG-------HMNEKNFVGLTVNSEYIACGSESNEVYV 120 (179)
Q Consensus 49 ~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~d~~v~v 120 (179)
+.+|++.|.++- +-+ -.+++|+.|.+||+||++-..++..+.. ..+.|..++..|.|+++++|-.|....+
T Consensus 179 ~sghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~l 257 (350)
T KOG0641|consen 179 LSGHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCML 257 (350)
T ss_pred ecCCcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEE
Confidence 667777776653 223 6789999999999999998877776643 2367889999999999999999999999
Q ss_pred EEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439 121 YHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 121 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
||++.+++++.+.. |...|.++.|+|.-.++++++.|..|++-|++
T Consensus 258 ydirg~r~iq~f~p------------hsadir~vrfsp~a~yllt~syd~~ikltdlq 303 (350)
T KOG0641|consen 258 YDIRGGRMIQRFHP------------HSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ 303 (350)
T ss_pred EEeeCCceeeeeCC------------CccceeEEEeCCCceEEEEecccceEEEeecc
Confidence 99999999887653 27889999999999999999999999998875
No 90
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.89 E-value=3e-22 Score=128.43 Aligned_cols=128 Identities=13% Similarity=0.240 Sum_probs=110.1
Q ss_pred CCCccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe----------CCCcee-eecccCceeEEEEeeC-CeEE
Q 038439 1 MAYGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY----------QSTAPC-VHGHKKAVSYVKFLSN-DELA 68 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----------~~~~~~-~~~~~~~i~~~~~~~~-~~l~ 68 (179)
++|++|++||..+++.++++..+.+|+++.++++| .+++.+ .....+ -..-...|.+...+|+ +.++
T Consensus 162 add~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG-~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fV 240 (334)
T KOG0278|consen 162 ADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDG-RILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFV 240 (334)
T ss_pred ccCCceEEEEeccCcEEEEEecCCCCcceeeccCC-CEEEEecCceeEEeccccccceeeccCccccccccccCCCceEE
Confidence 47999999999999999999999999999999999 565555 222222 2233456888899999 9999
Q ss_pred EecCCCcEEEEecCCCcceeee-cCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccc
Q 038439 69 SASTDSTLRLWDVKENLPVRTF-RGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPV 129 (179)
Q Consensus 69 ~~~~d~~v~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~ 129 (179)
.|+.|..++.||..+++.+..+ ++|.++|.++.|+|+|...++|++||+|++|....++..
T Consensus 241 aGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 241 AGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred ecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence 9999999999999999988886 899999999999999999999999999999998766554
No 91
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=5.9e-22 Score=140.21 Aligned_cols=163 Identities=18% Similarity=0.271 Sum_probs=132.2
Q ss_pred CccEEEEEcCCceeEEeecC-CCceeEEEEcCCCCeEEEEe-----------CCCcee--eec-ccCceeEEEEeeCCeE
Q 038439 3 YGKVKVWCTRQEASVLNIDM-KANICCVKYNPGSSNYIAKY-----------QSTAPC--VHG-HKKAVSYVKFLSNDEL 67 (179)
Q Consensus 3 d~~i~vwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~-----------~~~~~~--~~~-~~~~i~~~~~~~~~~l 67 (179)
...|++|+..+++.....+. ...|+++.|+++| .++++| ...+.+ +.+ |...|.+++|. ...+
T Consensus 196 g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G-~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~-~~~l 273 (484)
T KOG0305|consen 196 GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDG-SHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN-SSVL 273 (484)
T ss_pred cceEEEEecCCCceEEeEecCCCceEEEEECCCC-CEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc-CceE
Confidence 34799999998886555543 7889999999999 566666 122222 556 89999999998 4688
Q ss_pred EEecCCCcEEEEecCCCcceee-ecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccC
Q 038439 68 ASASTDSTLRLWDVKENLPVRT-FRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDA 146 (179)
Q Consensus 68 ~~~~~d~~v~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 146 (179)
.+|+.++.|..+|++..+.... +.+|...|..+.|++|+.++|+|+.|+.+.|||....+++..+. +|
T Consensus 274 ssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~-----------~H 342 (484)
T KOG0305|consen 274 SSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFT-----------EH 342 (484)
T ss_pred EEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEe-----------cc
Confidence 8999999999999998766554 78899999999999999999999999999999997666655443 22
Q ss_pred CcceEEEEEEcc-CCCeEEEEe--CCCcEEEEeecC
Q 038439 147 GSYFISAVCWKS-DSPTMLTAN--SQGTIKVLVLAA 179 (179)
Q Consensus 147 ~~~~i~~~~~~~-~~~~l~~~~--~dg~i~iwd~~~ 179 (179)
...|..++|+| ....||+|+ .|+.|++||..+
T Consensus 343 -~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~ 377 (484)
T KOG0305|consen 343 -TAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNT 377 (484)
T ss_pred -ceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCC
Confidence 88999999999 667788855 499999999753
No 92
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=7.2e-23 Score=148.13 Aligned_cols=143 Identities=17% Similarity=0.271 Sum_probs=119.4
Q ss_pred ceeEEEEcCCCCeEEEEe------------C--CCcee--eecccCceeEEEEeeC--CeEEEecCCCcEEEEecCCCcc
Q 038439 25 NICCVKYNPGSSNYIAKY------------Q--STAPC--VHGHKKAVSYVKFLSN--DELASASTDSTLRLWDVKENLP 86 (179)
Q Consensus 25 ~v~~~~~~~~~~~~~~~~------------~--~~~~~--~~~~~~~i~~~~~~~~--~~l~~~~~d~~v~iwd~~~~~~ 86 (179)
.+..++|+.-..++++++ + ..+.+ +..|+..++++.|++. .+|++||.||+|++||++..+.
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S 168 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS 168 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence 356778876555666666 1 12222 8899999999999998 8999999999999999999988
Q ss_pred eeeecCCCCCeEEEEEeeC-CCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEE
Q 038439 87 VRTFRGHMNEKNFVGLTVN-SEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLT 165 (179)
Q Consensus 87 ~~~~~~~~~~v~~~~~~~~-~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 165 (179)
..++.+....|+.+.|+|. +.+|+++...|.+++||+|..+... .++.. |.++|.++.|+|++.+||+
T Consensus 169 ~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~-~k~~A----------H~GpV~c~nwhPnr~~lAT 237 (839)
T KOG0269|consen 169 KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCE-KKLTA----------HNGPVLCLNWHPNREWLAT 237 (839)
T ss_pred cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHH-HHhhc----------ccCceEEEeecCCCceeee
Confidence 8999888889999999995 7789999999999999999765432 22322 3889999999999999999
Q ss_pred EeCCCcEEEEeec
Q 038439 166 ANSQGTIKVLVLA 178 (179)
Q Consensus 166 ~~~dg~i~iwd~~ 178 (179)
|+.|+.|+|||+.
T Consensus 238 GGRDK~vkiWd~t 250 (839)
T KOG0269|consen 238 GGRDKMVKIWDMT 250 (839)
T ss_pred cCCCccEEEEecc
Confidence 9999999999975
No 93
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.89 E-value=3.8e-21 Score=139.16 Aligned_cols=164 Identities=18% Similarity=0.253 Sum_probs=133.1
Q ss_pred CCccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEeCCCcee------------eecccCceeEEEEeeC-CeEE
Q 038439 2 AYGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKYQSTAPC------------VHGHKKAVSYVKFLSN-DELA 68 (179)
Q Consensus 2 ~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~i~~~~~~~~-~~l~ 68 (179)
..+.+++|+..+.+++.++... -+.+..|-|.+.+++...++++.. +++|.+.|++++.+|+ ..++
T Consensus 392 a~~SikiWn~~t~kciRTi~~~-y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~v 470 (888)
T KOG0306|consen 392 AGESIKIWNRDTLKCIRTITCG-YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFV 470 (888)
T ss_pred CCCcEEEEEccCcceeEEeccc-cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceE
Confidence 4689999999999999999876 789999999885444444554322 6789999999999999 8999
Q ss_pred EecCCCcEEEEecCC-----Cc--ceeeec-----CCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCC
Q 038439 69 SASTDSTLRLWDVKE-----NL--PVRTFR-----GHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSS 136 (179)
Q Consensus 69 ~~~~d~~v~iwd~~~-----~~--~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~ 136 (179)
+||.|.+|++||+.- +. .+..++ .-...|.++++||||++++++-.|++|+||-+.+.+...++.
T Consensus 471 T~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLY--- 547 (888)
T KOG0306|consen 471 TGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLY--- 547 (888)
T ss_pred EecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeec---
Confidence 999999999999742 11 111111 124578999999999999999999999999999877654432
Q ss_pred CCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439 137 PDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 137 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
+| .-+|.++..+||++.+++|+.|..|++|-+.
T Consensus 548 --------GH-kLPV~smDIS~DSklivTgSADKnVKiWGLd 580 (888)
T KOG0306|consen 548 --------GH-KLPVLSMDISPDSKLIVTGSADKNVKIWGLD 580 (888)
T ss_pred --------cc-ccceeEEeccCCcCeEEeccCCCceEEeccc
Confidence 22 8899999999999999999999999999763
No 94
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=2e-22 Score=143.51 Aligned_cols=166 Identities=17% Similarity=0.297 Sum_probs=135.6
Q ss_pred CCCccEEEEEcCCce------eEEeec-CCCceeEEEEcCCCCeEEEEe----------CCC--cee--eecccCceeEE
Q 038439 1 MAYGKVKVWCTRQEA------SVLNID-MKANICCVKYNPGSSNYIAKY----------QST--APC--VHGHKKAVSYV 59 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~------~~~~~~-~~~~v~~~~~~~~~~~~~~~~----------~~~--~~~--~~~~~~~i~~~ 59 (179)
|.||.|++|+..... .+..++ |.+.|+.+....++..++.++ ... -++ +..|...|.|+
T Consensus 44 GRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcl 123 (735)
T KOG0308|consen 44 GRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCL 123 (735)
T ss_pred CCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheee
Confidence 679999999976432 244554 778899999988887788777 111 222 78899999999
Q ss_pred EE-eeC-CeEEEecCCCcEEEEecCCCc--ceee--------ec-CCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCC
Q 038439 60 KF-LSN-DELASASTDSTLRLWDVKENL--PVRT--------FR-GHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEIS 126 (179)
Q Consensus 60 ~~-~~~-~~l~~~~~d~~v~iwd~~~~~--~~~~--------~~-~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~ 126 (179)
++ .++ .++++|+.|+.|.+||+..+. .+.+ +. ++...|++++.++.|..|++|+..+.+++||.+++
T Consensus 124 a~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~ 203 (735)
T KOG0308|consen 124 AYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTC 203 (735)
T ss_pred eecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccc
Confidence 99 566 889999999999999999762 2222 22 56778999999999999999999999999999999
Q ss_pred ccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439 127 KPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
+.+..+. +| ...|..+..++||..+++++.||+|++|||.
T Consensus 204 ~kimkLr--GH----------TdNVr~ll~~dDGt~~ls~sSDgtIrlWdLg 243 (735)
T KOG0308|consen 204 KKIMKLR--GH----------TDNVRVLLVNDDGTRLLSASSDGTIRLWDLG 243 (735)
T ss_pred cceeeee--cc----------ccceEEEEEcCCCCeEeecCCCceEEeeecc
Confidence 8876654 22 7789999999999999999999999999985
No 95
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.89 E-value=3.4e-22 Score=139.24 Aligned_cols=163 Identities=16% Similarity=0.307 Sum_probs=126.1
Q ss_pred CCCccEEEEEcCCce-eEEeec------CCCceeEEEEcCCCCeEEEEe-------------CCCcee---eecccC--c
Q 038439 1 MAYGKVKVWCTRQEA-SVLNID------MKANICCVKYNPGSSNYIAKY-------------QSTAPC---VHGHKK--A 55 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~-~~~~~~------~~~~v~~~~~~~~~~~~~~~~-------------~~~~~~---~~~~~~--~ 55 (179)
|+||+++|||++..+ .++.+. ..-++++++|+|+|. ++|+| ...++. -.+|.. .
T Consensus 288 s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~-~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~ 366 (641)
T KOG0772|consen 288 SYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGK-LIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQD 366 (641)
T ss_pred cCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcc-hhhhcccCCceeeeecCCcccccceEeeeccCCCCc
Confidence 689999999998654 333333 234689999999995 56666 111222 557877 8
Q ss_pred eeEEEEeeC-CeEEEecCCCcEEEEecCCC-cceeeecCC--CCCeEEEEEeeCCCEEEEecc------CCcEEEEEcCC
Q 038439 56 VSYVKFLSN-DELASASTDSTLRLWDVKEN-LPVRTFRGH--MNEKNFVGLTVNSEYIACGSE------SNEVYVYHKEI 125 (179)
Q Consensus 56 i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~-~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~------d~~v~vwd~~~ 125 (179)
|+|+.|+++ ++|++-+.|+++++||++.. +++....+- .-+-+.++|+|+.++|++|.. .|.+.+||..+
T Consensus 367 Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t 446 (641)
T KOG0772|consen 367 ITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMT 446 (641)
T ss_pred eeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccc
Confidence 999999999 99999999999999999975 344433322 234567899999999999854 57899999999
Q ss_pred CccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEe
Q 038439 126 SKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLV 176 (179)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd 176 (179)
.+.+..+.+. ...|..+.|+|.-+.|++|+.||.+++|-
T Consensus 447 ~d~v~ki~i~------------~aSvv~~~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 447 LDTVYKIDIS------------TASVVRCLWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred eeeEEEecCC------------CceEEEEeecchhhheeeecCCCceEEEE
Confidence 8888776653 55788999999999999999999999974
No 96
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.88 E-value=3.8e-22 Score=138.92 Aligned_cols=162 Identities=19% Similarity=0.296 Sum_probs=134.5
Q ss_pred CCccEEEEEcCCc---eeEEeec---CCCceeEEEEcCCCCeEEEEeCCC-----------cee---eecccCceeEEEE
Q 038439 2 AYGKVKVWCTRQE---ASVLNID---MKANICCVKYNPGSSNYIAKYQST-----------APC---VHGHKKAVSYVKF 61 (179)
Q Consensus 2 ~d~~i~vwd~~~~---~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~-----------~~~---~~~~~~~i~~~~~ 61 (179)
-.|.|+|||+... .++..+. ...-|.++...|+|+.+++.|... ..+ +....-....++.
T Consensus 438 GkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~ 517 (705)
T KOG0639|consen 438 GKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAI 517 (705)
T ss_pred CCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhc
Confidence 3589999998753 2333343 456799999999998888887210 011 2222334567889
Q ss_pred eeC-CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCC
Q 038439 62 LSN-DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMD 140 (179)
Q Consensus 62 ~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~ 140 (179)
+|| ...+++..||.|.|||+.....++.|++|...+.|+..++||..|-+|+.|++|+.||+++++.++...+
T Consensus 518 spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF------ 591 (705)
T KOG0639|consen 518 SPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDF------ 591 (705)
T ss_pred CCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhh------
Confidence 999 8899999999999999999999999999999999999999999999999999999999999999888877
Q ss_pred CCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEe
Q 038439 141 DTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLV 176 (179)
Q Consensus 141 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd 176 (179)
...|.++-.+|++.+|++|-.++.+.|-.
T Consensus 592 -------~SQIfSLg~cP~~dWlavGMens~vevlh 620 (705)
T KOG0639|consen 592 -------SSQIFSLGYCPTGDWLAVGMENSNVEVLH 620 (705)
T ss_pred -------hhhheecccCCCccceeeecccCcEEEEe
Confidence 77899999999999999999999887754
No 97
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=2e-21 Score=138.55 Aligned_cols=166 Identities=16% Similarity=0.237 Sum_probs=140.9
Q ss_pred CCCccEEEEEcCCc--eeEEeec-CCCceeEEEE-cCCCCeEEEEe-----------CCC--------cee----ee-cc
Q 038439 1 MAYGKVKVWCTRQE--ASVLNID-MKANICCVKY-NPGSSNYIAKY-----------QST--------APC----VH-GH 52 (179)
Q Consensus 1 ~~d~~i~vwd~~~~--~~~~~~~-~~~~v~~~~~-~~~~~~~~~~~-----------~~~--------~~~----~~-~~ 52 (179)
|.|-+|++|+...+ -++.++. |++-|.|+++ .++. .++++| +.+ ..+ +. ++
T Consensus 92 SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~-~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~ 170 (735)
T KOG0308|consen 92 SSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNN-ELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGP 170 (735)
T ss_pred cCCceEEEeecccCcchhHhhhhcccchheeeeecccCc-eeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCC
Confidence 57899999999877 4666664 9999999999 5555 666666 211 111 33 78
Q ss_pred cCceeEEEEeeC-CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccc
Q 038439 53 KKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTW 131 (179)
Q Consensus 53 ~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~ 131 (179)
..+|.+++.++. ..+++|+..+.+++||.++++.+..+++|...|+.+..++||+.+++++.||+|++||+...+++.+
T Consensus 171 k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T 250 (735)
T KOG0308|consen 171 KDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLAT 250 (735)
T ss_pred ccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeee
Confidence 889999999888 7889999999999999999999999999999999999999999999999999999999998888877
Q ss_pred cccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439 132 HRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA 179 (179)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 179 (179)
+... ...|+++..+|+-..+++|+.||.|..=|+++
T Consensus 251 ~~vH------------~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n 286 (735)
T KOG0308|consen 251 YIVH------------KEGVWALQSSPSFTHVYSGGRDGNIYRTDLRN 286 (735)
T ss_pred EEec------------cCceEEEeeCCCcceEEecCCCCcEEecccCC
Confidence 6542 66799999999999999999999999888764
No 98
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=6e-23 Score=147.68 Aligned_cols=166 Identities=17% Similarity=0.311 Sum_probs=142.9
Q ss_pred CCCccEEEEEcCCceeEEee-cCCCceeEEEEcCCCCeEEEEeC-----------CCcee--eecccCceeEEEEeeC-C
Q 038439 1 MAYGKVKVWCTRQEASVLNI-DMKANICCVKYNPGSSNYIAKYQ-----------STAPC--VHGHKKAVSYVKFLSN-D 65 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~-----------~~~~~--~~~~~~~i~~~~~~~~-~ 65 (179)
|+|..+-||.......+..+ .|..+|.++.|++.. .++++|. ..+.+ +.+|...+.++.|+|- .
T Consensus 47 g~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E-~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~ 125 (825)
T KOG0267|consen 47 GEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSE-RLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGE 125 (825)
T ss_pred CCceeeccccccCCchhheeeccCCcceeeecCcch-hhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceE
Confidence 35667778887777666665 489999999999988 6777761 22223 7799999999999999 8
Q ss_pred eEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCccc
Q 038439 66 ELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDED 145 (179)
Q Consensus 66 ~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 145 (179)
+++.++.|..+++||++..-+...+++|...+..+.|+|+|+++++|++|..+++||+..++....+..
T Consensus 126 ~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~----------- 194 (825)
T KOG0267|consen 126 FFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKS----------- 194 (825)
T ss_pred EeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccccccccccccc-----------
Confidence 889999999999999998889999999999999999999999999999999999999999998876552
Q ss_pred CCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439 146 AGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA 179 (179)
Q Consensus 146 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 179 (179)
|...+..+.|+|..-++++|+.|+++++||+++
T Consensus 195 -~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dlet 227 (825)
T KOG0267|consen 195 -HEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLET 227 (825)
T ss_pred -ccccccccccCchhhhhccCCCCceeeeeccce
Confidence 177889999999999999999999999999874
No 99
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.88 E-value=4.3e-21 Score=137.59 Aligned_cols=159 Identities=19% Similarity=0.324 Sum_probs=133.8
Q ss_pred CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe--------CCCcee--eecccCceeEEEEeeCCeEEE
Q 038439 1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY--------QSTAPC--VHGHKKAVSYVKFLSNDELAS 69 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~--------~~~~~~--~~~~~~~i~~~~~~~~~~l~~ 69 (179)
|.|.++++|-.. ++...++ |+..|.+++.-|.+ .++..+ ..++.+ +.+|+..|..+++.++..|++
T Consensus 119 SWD~TakvW~~~--~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~~~l~tf~gHtD~VRgL~vl~~~~flS 195 (745)
T KOG0301|consen 119 SWDSTAKVWRIG--ELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGGTLLKTFSGHTDCVRGLAVLDDSHFLS 195 (745)
T ss_pred ccccceEEecch--hhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccCCchhhhhccchhheeeeEEecCCCeEe
Confidence 679999999854 4444454 99999999999988 555554 445555 899999999999999989999
Q ss_pred ecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcc
Q 038439 70 ASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSY 149 (179)
Q Consensus 70 ~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (179)
++.||.|++|++ +++.+..+.+|++-+++++..+++..++++++|+++++|+.. ++.+.+.+. ..
T Consensus 196 csNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lP------------tt 260 (745)
T KOG0301|consen 196 CSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLP------------TT 260 (745)
T ss_pred ecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecC------------cc
Confidence 999999999999 688899999999999999988889999999999999999987 555555543 55
Q ss_pred eEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439 150 FISAVCWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 150 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
.|+++.+-++|. +++|+.||.|+||...
T Consensus 261 siWsa~~L~NgD-Ivvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 261 SIWSAKVLLNGD-IVVGGSDGRVRVFTVD 288 (745)
T ss_pred ceEEEEEeeCCC-EEEeccCceEEEEEec
Confidence 799999988888 7789999999999754
No 100
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.88 E-value=2.5e-21 Score=131.52 Aligned_cols=163 Identities=18% Similarity=0.283 Sum_probs=127.1
Q ss_pred CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe-------------------------------------
Q 038439 1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY------------------------------------- 42 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~------------------------------------- 42 (179)
++|+.+++|++...+...++. |.+.|+++.|...... ++.|
T Consensus 238 s~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~-vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~ 316 (459)
T KOG0288|consen 238 SNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSR-VVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVI 316 (459)
T ss_pred cCCCceeeeeccchhhhhhhcccccceeeehhhccccc-eeeccccchhhhhhhhhhheeccccccccccceEecceeee
Confidence 578888999988888777775 8888888888776543 4444
Q ss_pred -------------CCCcee--eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCcceeeecCC----CCCeEEEEE
Q 038439 43 -------------QSTAPC--VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRGH----MNEKNFVGL 102 (179)
Q Consensus 43 -------------~~~~~~--~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~----~~~v~~~~~ 102 (179)
+...++ ... .+.|+++..+++ ..+++++.|.++.+.|+++.+....+... .+..+.+.|
T Consensus 317 SgH~DkkvRfwD~Rs~~~~~sv~~-gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvf 395 (459)
T KOG0288|consen 317 SGHFDKKVRFWDIRSADKTRSVPL-GGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVF 395 (459)
T ss_pred ecccccceEEEeccCCceeeEeec-CcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEE
Confidence 111111 112 236888888888 77888899999999999988777776542 234678899
Q ss_pred eeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEE
Q 038439 103 TVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVL 175 (179)
Q Consensus 103 ~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw 175 (179)
+|++.|+++|+.||.|+||++.+++.......... ...|++++|+|.|..|++++.++.+.+|
T Consensus 396 Spd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s----------~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 396 SPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTS----------NAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred CCCCceeeeccCCCcEEEEEccCceEEEEeccCCC----------CcceEEEEEcCCCchhhcccCCcceEec
Confidence 99999999999999999999999998776655322 3379999999999999999999999999
No 101
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.87 E-value=4.2e-22 Score=135.21 Aligned_cols=170 Identities=15% Similarity=0.223 Sum_probs=126.7
Q ss_pred CCCccEEEEEcCCce--eEEeec-CCCceeEEEEcCCCCeEEEEeCCC----------cee--eecccCceeEEEEeeC-
Q 038439 1 MAYGKVKVWCTRQEA--SVLNID-MKANICCVKYNPGSSNYIAKYQST----------APC--VHGHKKAVSYVKFLSN- 64 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~--~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~----------~~~--~~~~~~~i~~~~~~~~- 64 (179)
|.|..|++|++...+ ...++. ..++|++++|.+++..+++.++.+ +.. +.+|+..|+++.|...
T Consensus 194 g~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~ 273 (459)
T KOG0288|consen 194 GSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSH 273 (459)
T ss_pred chhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccc
Confidence 468899999987665 444454 568899999999998888888222 222 7889988888877665
Q ss_pred CeEEEecCCCcEEEEecC---------------------------------------CCcceeeecCCCCCeEEEEEeeC
Q 038439 65 DELASASTDSTLRLWDVK---------------------------------------ENLPVRTFRGHMNEKNFVGLTVN 105 (179)
Q Consensus 65 ~~l~~~~~d~~v~iwd~~---------------------------------------~~~~~~~~~~~~~~v~~~~~~~~ 105 (179)
..+++|+.|.+++.||+. +..+...+.. .+.|+++..+++
T Consensus 274 ~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~-gg~vtSl~ls~~ 352 (459)
T KOG0288|consen 274 SRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPL-GGRVTSLDLSMD 352 (459)
T ss_pred cceeeccccchhhhhhhhhhheeccccccccccceEecceeeeecccccceEEEeccCCceeeEeec-CcceeeEeeccC
Confidence 335566666555555554 4444444433 347888999999
Q ss_pred CCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439 106 SEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA 179 (179)
Q Consensus 106 ~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 179 (179)
+..+.+++.|..+.+.|+++.+....+....... ....+.+.|+|++.|+++|+.||.|+||++.+
T Consensus 353 g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~--------asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~t 418 (459)
T KOG0288|consen 353 GLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKC--------ASDWTRVVFSPDGSYVAAGSADGSVYIWSVFT 418 (459)
T ss_pred CeEEeeecCCCceeeeecccccEEEEeecccccc--------ccccceeEECCCCceeeeccCCCcEEEEEccC
Confidence 9999999999999999999988776665432210 44588999999999999999999999999753
No 102
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.87 E-value=2.9e-21 Score=144.04 Aligned_cols=160 Identities=20% Similarity=0.349 Sum_probs=124.1
Q ss_pred CCccEEEEEcCC------------ceeEEee-cCCCceeEEEEcCCCCeEEEEe----------C---------------
Q 038439 2 AYGKVKVWCTRQ------------EASVLNI-DMKANICCVKYNPGSSNYIAKY----------Q--------------- 43 (179)
Q Consensus 2 ~d~~i~vwd~~~------------~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~----------~--------------- 43 (179)
.|+.+.||+.+. .+.+.+. .|.+.|+|+.|+||| .++|.| .
T Consensus 35 ~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG-~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~ 113 (942)
T KOG0973|consen 35 LDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDG-SYLASGSDDRLVMIWERAEIGSGTVFGSTGGA 113 (942)
T ss_pred ccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCC-CeEeeccCcceEEEeeecccCCcccccccccc
Confidence 478888998642 1122223 488999999999999 455555 0
Q ss_pred ----CCcee--eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCC
Q 038439 44 ----STAPC--VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESN 116 (179)
Q Consensus 44 ----~~~~~--~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~ 116 (179)
.-+.+ +.+|...|..++|+|+ .++++++.|++|.+|+.++.+.+..+++|.+.|..+.|.|-|+||++-+.|+
T Consensus 114 ~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDr 193 (942)
T KOG0973|consen 114 KNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDR 193 (942)
T ss_pred cccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCc
Confidence 01122 8899999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeC
Q 038439 117 EVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANS 168 (179)
Q Consensus 117 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 168 (179)
+|++|+..+-.......- +... .........+.|+|||.+|++...
T Consensus 194 tikvwrt~dw~i~k~It~--pf~~----~~~~T~f~RlSWSPDG~~las~nA 239 (942)
T KOG0973|consen 194 TLKVWRTSDWGIEKSITK--PFEE----SPLTTFFLRLSWSPDGHHLASPNA 239 (942)
T ss_pred eEEEEEcccceeeEeecc--chhh----CCCcceeeecccCCCcCeecchhh
Confidence 999999766433322211 1000 001557889999999999998654
No 103
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=3.8e-20 Score=126.74 Aligned_cols=168 Identities=14% Similarity=0.217 Sum_probs=133.2
Q ss_pred CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEeCCCcee--ee-----------cccCceeEEEEeeC--
Q 038439 1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKYQSTAPC--VH-----------GHKKAVSYVKFLSN-- 64 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~--~~-----------~~~~~i~~~~~~~~-- 64 (179)
|.|.+|++||+.++++..++. |...|.+++|+|..+.++..|...+.+ .. .-.+.|-.+.|.|.
T Consensus 263 saD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se 342 (463)
T KOG0270|consen 263 SADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSE 342 (463)
T ss_pred CCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCc
Confidence 679999999999999999997 788999999999988888888332222 11 23467888999998
Q ss_pred CeEEEecCCCcEEEEecCC-CcceeeecCCCCCeEEEEEeeC-CCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCC
Q 038439 65 DELASASTDSTLRLWDVKE-NLPVRTFRGHMNEKNFVGLTVN-SEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDT 142 (179)
Q Consensus 65 ~~l~~~~~d~~v~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~ 142 (179)
..++++..||+|+-+|+|. ++++.+++.|..+|.++++++. ..++++++.|+.|++|++....+.........
T Consensus 343 ~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~----- 417 (463)
T KOG0270|consen 343 NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFK----- 417 (463)
T ss_pred eeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccccccccc-----
Confidence 7788889999999999997 4899999999999999999986 45688999999999999986555333221100
Q ss_pred cccCCcceEEEEEEccCCC-eEEEEeCCCcEEEEeec
Q 038439 143 DEDAGSYFISAVCWKSDSP-TMLTANSQGTIKVLVLA 178 (179)
Q Consensus 143 ~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~iwd~~ 178 (179)
-+...|.++.|+-. .++.|+..+.++|||+.
T Consensus 418 -----~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~ 449 (463)
T KOG0270|consen 418 -----LGRLHCFALDPDVAFTLAFGGEKAVLRVWDIF 449 (463)
T ss_pred -----ccceeecccCCCcceEEEecCccceEEEeecc
Confidence 23466777777654 56778888889999974
No 104
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=2.9e-22 Score=144.25 Aligned_cols=157 Identities=18% Similarity=0.308 Sum_probs=135.6
Q ss_pred CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe-----------CCCcee--eecccCceeEEEEeeC-C
Q 038439 1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY-----------QSTAPC--VHGHKKAVSYVKFLSN-D 65 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~--~~~~~~~i~~~~~~~~-~ 65 (179)
+.||+|++||++..+.++++- |...+.++.|+|-+ .+++.| +...+. +.+|...+.+++|+|+ .
T Consensus 89 sasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~-~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr 167 (825)
T KOG0267|consen 89 SASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYG-EFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGR 167 (825)
T ss_pred ccCCceeeeehhhhhhhhhhhccccCcceeeeccce-EEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCc
Confidence 468999999999999888774 88999999999999 566666 222333 7789999999999999 7
Q ss_pred eEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCccc
Q 038439 66 ELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDED 145 (179)
Q Consensus 66 ~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 145 (179)
+++.++.|..++|||+..++.+..|+.|...+..+.|+|..-.+++|+.|+.+++||+++.+.+......
T Consensus 168 ~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~---------- 237 (825)
T KOG0267|consen 168 WVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE---------- 237 (825)
T ss_pred eeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc----------
Confidence 9999999999999999999999999999999999999999988999999999999999988777654432
Q ss_pred CCcceEEEEEEccCCCeEEEEeCCC
Q 038439 146 AGSYFISAVCWKSDSPTMLTANSQG 170 (179)
Q Consensus 146 ~~~~~i~~~~~~~~~~~l~~~~~dg 170 (179)
...|.++.|+|++..+++|....
T Consensus 238 --~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 238 --TDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred --cCCceeeeecCCceeeecCchhh
Confidence 55799999999999998887653
No 105
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=1e-20 Score=128.80 Aligned_cols=145 Identities=14% Similarity=0.176 Sum_probs=120.1
Q ss_pred cCCCceeEEEEcCCCCeEEEEe------------CCCc--ee--eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCC
Q 038439 21 DMKANICCVKYNPGSSNYIAKY------------QSTA--PC--VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKE 83 (179)
Q Consensus 21 ~~~~~v~~~~~~~~~~~~~~~~------------~~~~--~~--~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~ 83 (179)
.|..+|..+.||++| +++|++ ...+ .. +.+|..+|..+.|+|| +++++++.+..+.+||+.+
T Consensus 222 ~htdEVWfl~FS~nG-kyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~t 300 (519)
T KOG0293|consen 222 DHTDEVWFLQFSHNG-KYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDT 300 (519)
T ss_pred hCCCcEEEEEEcCCC-eeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCc
Confidence 388999999999999 555555 1111 12 7789999999999999 9999999999999999999
Q ss_pred CcceeeecCC-CCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCe
Q 038439 84 NLPVRTFRGH-MNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPT 162 (179)
Q Consensus 84 ~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 162 (179)
+...+.+... .-.+.+.+|.|||..+++|+.|+.+..||+.... ...++... ...|.+++..+||++
T Consensus 301 gd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr-----------~~~v~dlait~Dgk~ 368 (519)
T KOG0293|consen 301 GDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-LGNWEGVR-----------DPKVHDLAITYDGKY 368 (519)
T ss_pred chhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch-hhcccccc-----------cceeEEEEEcCCCcE
Confidence 9988877543 4678899999999999999999999999997543 33333211 346999999999999
Q ss_pred EEEEeCCCcEEEEeec
Q 038439 163 MLTANSQGTIKVLVLA 178 (179)
Q Consensus 163 l~~~~~dg~i~iwd~~ 178 (179)
+++.+.|..|++|+.+
T Consensus 369 vl~v~~d~~i~l~~~e 384 (519)
T KOG0293|consen 369 VLLVTVDKKIRLYNRE 384 (519)
T ss_pred EEEEecccceeeechh
Confidence 9999999999999865
No 106
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=4.4e-20 Score=121.77 Aligned_cols=176 Identities=15% Similarity=0.184 Sum_probs=120.2
Q ss_pred CCCccEEEEEcCCceeEEee-cCCCceeEEEEcCCCC--eEEEEeCC----------Ccee--eecccCceeEEEEeeC-
Q 038439 1 MAYGKVKVWCTRQEASVLNI-DMKANICCVKYNPGSS--NYIAKYQS----------TAPC--VHGHKKAVSYVKFLSN- 64 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~--~~~~~~~~----------~~~~--~~~~~~~i~~~~~~~~- 64 (179)
|.|.+|+|||..+...+..+ .|.+.|+++.|.+... .++++... -..+ +++|.+.|+.++.+|.
T Consensus 60 ssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~ 139 (362)
T KOG0294|consen 60 SSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSG 139 (362)
T ss_pred CCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCC
Confidence 67999999999988877766 5889999999998764 67777622 2334 8899999999999999
Q ss_pred CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccC---------
Q 038439 65 DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFS--------- 135 (179)
Q Consensus 65 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~--------- 135 (179)
.+-++.+.|+.+++||+-.++.-..+.- ......+.|+|.|.+|+.++.+ .|-+|.+.+..........
T Consensus 140 KLALsVg~D~~lr~WNLV~Gr~a~v~~L-~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~~r~l~~~~l 217 (362)
T KOG0294|consen 140 KLALSVGGDQVLRTWNLVRGRVAFVLNL-KNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENPKRILCATFL 217 (362)
T ss_pred ceEEEEcCCceeeeehhhcCccceeecc-CCcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhccccceeeeec
Confidence 7778899999999999988754333221 1222346666766666555543 3555555432211111100
Q ss_pred -------------------CCCCCCCcccCCcceEEEEEE--ccCCCeEEEEeCCCcEEEEeec
Q 038439 136 -------------------SPDMDDTDEDAGSYFISAVCW--KSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 136 -------------------~~~~~~~~~~~~~~~i~~~~~--~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
...........|..+|-.+.+ .|++.+|++++.||.|+|||++
T Consensus 218 ~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~ 281 (362)
T KOG0294|consen 218 DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDID 281 (362)
T ss_pred CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcc
Confidence 001111122334778888874 4678899999999999999986
No 107
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=5.3e-21 Score=122.23 Aligned_cols=167 Identities=17% Similarity=0.231 Sum_probs=127.6
Q ss_pred CCCccEEEEEcCCceeEEeec---CCCceeEEEEcCCCC-eEEEEe------------CCC----ceeeecccCceeEEE
Q 038439 1 MAYGKVKVWCTRQEASVLNID---MKANICCVKYNPGSS-NYIAKY------------QST----APCVHGHKKAVSYVK 60 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~~~~~~~---~~~~v~~~~~~~~~~-~~~~~~------------~~~----~~~~~~~~~~i~~~~ 60 (179)
+.||.|.||.-.+++-.+... |...|++++|.|.+- .+++++ ..+ +.+..+|.-.+++++
T Consensus 77 sYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVs 156 (299)
T KOG1332|consen 77 SYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVS 156 (299)
T ss_pred ecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceee
Confidence 579999999988886544443 788999999999753 345554 111 111678999999999
Q ss_pred EeeC--C-------------eEEEecCCCcEEEEecCCCc--ceeeecCCCCCeEEEEEeeC----CCEEEEeccCCcEE
Q 038439 61 FLSN--D-------------ELASASTDSTLRLWDVKENL--PVRTFRGHMNEKNFVGLTVN----SEYIACGSESNEVY 119 (179)
Q Consensus 61 ~~~~--~-------------~l~~~~~d~~v~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~----~~~~~~~~~d~~v~ 119 (179)
|.|. . .|++|+.|..|+||+...++ .-.++.+|...|+.++|.|. ..+|++++.||.|.
T Consensus 157 wapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~vi 236 (299)
T KOG1332|consen 157 WAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVI 236 (299)
T ss_pred ecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEE
Confidence 9986 2 49999999999999998753 33558899999999999996 34699999999999
Q ss_pred EEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEe
Q 038439 120 VYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLV 176 (179)
Q Consensus 120 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd 176 (179)
||-.+.........+.... ...++.++|++.|+.|++++.|+.+.+|.
T Consensus 237 Iwt~~~e~e~wk~tll~~f---------~~~~w~vSWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 237 IWTKDEEYEPWKKTLLEEF---------PDVVWRVSWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred EEEecCccCcccccccccC---------CcceEEEEEeccccEEEEecCCcEEEEEE
Confidence 9987732222111111110 55799999999999999999999999995
No 108
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=1.4e-20 Score=120.25 Aligned_cols=166 Identities=15% Similarity=0.187 Sum_probs=128.9
Q ss_pred CCCccEEEEEcCCce---eEEeec-CCCceeEEEEcC--CCCeEEEEe-CCCcee--------------eecccCceeEE
Q 038439 1 MAYGKVKVWCTRQEA---SVLNID-MKANICCVKYNP--GSSNYIAKY-QSTAPC--------------VHGHKKAVSYV 59 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~---~~~~~~-~~~~v~~~~~~~--~~~~~~~~~-~~~~~~--------------~~~~~~~i~~~ 59 (179)
|.|++|+|+.++... ++.++. |.+||..++|.. .| .+++.+ -.++.+ ...|...|+++
T Consensus 30 sSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G-~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV 108 (299)
T KOG1332|consen 30 SSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFG-TILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSV 108 (299)
T ss_pred cCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccC-cEeeEeecCceEEEEecCCCchhhhhhhhhhcccceee
Confidence 579999999987643 455554 899999999964 45 566665 222222 56789999999
Q ss_pred EEeeC---CeEEEecCCCcEEEEecCCC---cceeeecCCCCCeEEEEEeeC---C-----------CEEEEeccCCcEE
Q 038439 60 KFLSN---DELASASTDSTLRLWDVKEN---LPVRTFRGHMNEKNFVGLTVN---S-----------EYIACGSESNEVY 119 (179)
Q Consensus 60 ~~~~~---~~l~~~~~d~~v~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~---~-----------~~~~~~~~d~~v~ 119 (179)
+|.|. -.|++++.||.|.|.+++.. ........|.-.|++++|.|- | +.|++|+.|+.|+
T Consensus 109 ~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~Vk 188 (299)
T KOG1332|consen 109 AWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVK 188 (299)
T ss_pred cccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCcccee
Confidence 99998 46788999999999998764 222345678889999999985 4 5699999999999
Q ss_pred EEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCC----CeEEEEeCCCcEEEEee
Q 038439 120 VYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDS----PTMLTANSQGTIKVLVL 177 (179)
Q Consensus 120 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~l~~~~~dg~i~iwd~ 177 (179)
||+..+++-+....+..| ...|+.++|.|.- .+|++++.||++.||-.
T Consensus 189 iW~~~~~~w~~e~~l~~H----------~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~ 240 (299)
T KOG1332|consen 189 IWKFDSDSWKLERTLEGH----------KDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTK 240 (299)
T ss_pred eeecCCcchhhhhhhhhc----------chhhhhhhhccccCCCceeeEEecCCCcEEEEEe
Confidence 999998754444334333 8899999999954 57999999999999964
No 109
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=4.8e-20 Score=122.08 Aligned_cols=167 Identities=14% Similarity=0.204 Sum_probs=125.8
Q ss_pred CCCccEEEEEcCCceeE-----EeecCCCceeEEEEcCCCCeEEEEeCCCcee-------------------------ee
Q 038439 1 MAYGKVKVWCTRQEASV-----LNIDMKANICCVKYNPGSSNYIAKYQSTAPC-------------------------VH 50 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-------------------------~~ 50 (179)
+.|++|+||+++..+.. +..-.-+..+.++|+||...+++....+..+ -+
T Consensus 105 ~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~ 184 (420)
T KOG2096|consen 105 SGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFER 184 (420)
T ss_pred eCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccch
Confidence 47999999999874321 1111224678899999987666655111111 22
Q ss_pred cccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCc--
Q 038439 51 GHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISK-- 127 (179)
Q Consensus 51 ~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~-- 127 (179)
.|...|..+-...+ .++++++.|..|.+|+++ |+.+..+.......+..+.+|+|+++++++-..-|++|.+--.+
T Consensus 185 kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG 263 (420)
T KOG2096|consen 185 KHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDG 263 (420)
T ss_pred hcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCc
Confidence 34555666666666 889999999999999999 88899998877788889999999999999999999999864321
Q ss_pred ----cccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439 128 ----PVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 128 ----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
....+.+..| ...|..++|+++...+++.+.||+++|||+.
T Consensus 264 ~fqev~rvf~LkGH----------~saV~~~aFsn~S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 264 TFQEVKRVFSLKGH----------QSAVLAAAFSNSSTRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred chhhhhhhheeccc----------hhheeeeeeCCCcceeEEEecCCcEEEeecc
Confidence 2223334333 8899999999999999999999999999964
No 110
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.86 E-value=1.6e-19 Score=131.99 Aligned_cols=125 Identities=10% Similarity=0.092 Sum_probs=105.1
Q ss_pred CceeEEEEeeC-CeEEEecCCCcEEEEecCCCcceeee---cCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccc
Q 038439 54 KAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTF---RGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPV 129 (179)
Q Consensus 54 ~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~ 129 (179)
..+++++.++. ++.+.|+..|.|-+|++++|-....+ ..|.++|+.++...-++.+++++.+|.+++||......+
T Consensus 449 ~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~ 528 (910)
T KOG1539|consen 449 INATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLK 528 (910)
T ss_pred cceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCccee
Confidence 45778888888 88889999999999999999887787 478999999999888899999999999999999887655
Q ss_pred cccccCCC------------------------------CCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439 130 TWHRFSSP------------------------------DMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA 179 (179)
Q Consensus 130 ~~~~~~~~------------------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 179 (179)
..+.+... ...+.+.+| +..|++++|||||++|++++.|++|++||+.+
T Consensus 529 ~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh-~nritd~~FS~DgrWlisasmD~tIr~wDlpt 607 (910)
T KOG1539|consen 529 KSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGH-GNRITDMTFSPDGRWLISASMDSTIRTWDLPT 607 (910)
T ss_pred eeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhcc-ccceeeeEeCCCCcEEEEeecCCcEEEEeccC
Confidence 55444332 133445555 88999999999999999999999999999864
No 111
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.86 E-value=2.7e-19 Score=123.26 Aligned_cols=165 Identities=15% Similarity=0.140 Sum_probs=119.0
Q ss_pred CCccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEeCCCcee--ee----------cccCceeEEEEeeC-CeEE
Q 038439 2 AYGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKYQSTAPC--VH----------GHKKAVSYVKFLSN-DELA 68 (179)
Q Consensus 2 ~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~--~~----------~~~~~i~~~~~~~~-~~l~ 68 (179)
.|+.|++||+.+.+.+..+.....+.+++|+|++..++++......+ +. ........+.|+|+ ..++
T Consensus 93 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~ 172 (300)
T TIGR03866 93 DDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELW 172 (300)
T ss_pred CCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEE
Confidence 57899999999988888887666789999999996665554221111 11 11234567889999 6664
Q ss_pred -EecCCCcEEEEecCCCcceeeecCCC-------CCeEEEEEeeCCCEEEE-eccCCcEEEEEcCCCccccccccCCCCC
Q 038439 69 -SASTDSTLRLWDVKENLPVRTFRGHM-------NEKNFVGLTVNSEYIAC-GSESNEVYVYHKEISKPVTWHRFSSPDM 139 (179)
Q Consensus 69 -~~~~d~~v~iwd~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~~~-~~~d~~v~vwd~~~~~~~~~~~~~~~~~ 139 (179)
++..++.|++||+++++.+..+..+. .....++|+|+++++++ ...++.+.+||+++++.......
T Consensus 173 ~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~----- 247 (300)
T TIGR03866 173 VSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLV----- 247 (300)
T ss_pred EEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEe-----
Confidence 44568999999999887766554221 12346889999998554 45567899999988776544322
Q ss_pred CCCcccCCcceEEEEEEccCCCeEEEEe-CCCcEEEEeecC
Q 038439 140 DDTDEDAGSYFISAVCWKSDSPTMLTAN-SQGTIKVLVLAA 179 (179)
Q Consensus 140 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~ 179 (179)
...+.+++|+|++++|+++. .+|.|.+||+++
T Consensus 248 --------~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~ 280 (300)
T TIGR03866 248 --------GQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAA 280 (300)
T ss_pred --------CCCcceEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence 34688999999999998864 589999999864
No 112
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.86 E-value=6.3e-20 Score=126.16 Aligned_cols=177 Identities=18% Similarity=0.310 Sum_probs=138.7
Q ss_pred CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEeCC----------Ccee--eecccCceeEEEEeeC-Ce
Q 038439 1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKYQS----------TAPC--VHGHKKAVSYVKFLSN-DE 66 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~----------~~~~--~~~~~~~i~~~~~~~~-~~ 66 (179)
+-|..|.||+..+.+.++.+. |.+.|.+++|-.....+++++.. ...+ +.+|...|..|....- ..
T Consensus 221 g~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~ 300 (479)
T KOG0299|consen 221 GRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERC 300 (479)
T ss_pred CCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccce
Confidence 357789999999999999975 88999999998777678887711 1122 7789999999987766 55
Q ss_pred EEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccC
Q 038439 67 LASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDA 146 (179)
Q Consensus 67 l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 146 (179)
+-.|+.|+++++|++... ....+.++.+.+-|++|-. ...|++|+.+|.|.+|++...+++.......+.......-.
T Consensus 301 vtVGgrDrT~rlwKi~ee-sqlifrg~~~sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~ 378 (479)
T KOG0299|consen 301 VTVGGRDRTVRLWKIPEE-SQLIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVN 378 (479)
T ss_pred EEeccccceeEEEecccc-ceeeeeCCCCCeeeEEEec-ccceeeccCCceEEEeeecccCceeEeeccccccCCccccc
Confidence 555669999999999543 3446677888899999865 45689999999999999999999887765544332221122
Q ss_pred CcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439 147 GSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA 179 (179)
Q Consensus 147 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 179 (179)
+...|++++..|..+++++|+.+|.|++|-+++
T Consensus 379 ~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~ 411 (479)
T KOG0299|consen 379 GNFWITSLAVIPGSDLLASGSWSGCVRLWKIED 411 (479)
T ss_pred cccceeeeEecccCceEEecCCCCceEEEEecC
Confidence 245899999999999999999999999998753
No 113
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.86 E-value=5.3e-20 Score=120.76 Aligned_cols=142 Identities=18% Similarity=0.228 Sum_probs=119.5
Q ss_pred CCCceeEEEEcCCCCeEEEEe------------CCCcee---eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCc
Q 038439 22 MKANICCVKYNPGSSNYIAKY------------QSTAPC---VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENL 85 (179)
Q Consensus 22 ~~~~v~~~~~~~~~~~~~~~~------------~~~~~~---~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~ 85 (179)
..+.|.+++|||....++++| +.+..+ ...|.++|.+++|+.+ ..+++|+.|+.+++||+.++
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~- 104 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG- 104 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC-
Confidence 456799999999766777676 333333 6679999999999999 99999999999999999998
Q ss_pred ceeeecCCCCCeEEEEEeeCCC--EEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeE
Q 038439 86 PVRTFRGHMNEKNFVGLTVNSE--YIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTM 163 (179)
Q Consensus 86 ~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 163 (179)
++.++..|..+|..+.|-+... .|++|+.|.+|+.||.|...++..+.+ ...++++.. -..++
T Consensus 105 Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L-------------PeRvYa~Dv--~~pm~ 169 (347)
T KOG0647|consen 105 QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL-------------PERVYAADV--LYPMA 169 (347)
T ss_pred CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec-------------cceeeehhc--cCcee
Confidence 5678888999999999987655 699999999999999999999888877 556776655 35678
Q ss_pred EEEeCCCcEEEEeecC
Q 038439 164 LTANSQGTIKVLVLAA 179 (179)
Q Consensus 164 ~~~~~dg~i~iwd~~~ 179 (179)
+++..+..|.+|+|++
T Consensus 170 vVata~r~i~vynL~n 185 (347)
T KOG0647|consen 170 VVATAERHIAVYNLEN 185 (347)
T ss_pred EEEecCCcEEEEEcCC
Confidence 8899999999999963
No 114
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.86 E-value=4.8e-20 Score=120.97 Aligned_cols=178 Identities=15% Similarity=0.148 Sum_probs=133.0
Q ss_pred CCCccEEEEEcCCce----------eEEee------cCCCceeEEEEcCCCCeEEEEe-----------CCCcee-eecc
Q 038439 1 MAYGKVKVWCTRQEA----------SVLNI------DMKANICCVKYNPGSSNYIAKY-----------QSTAPC-VHGH 52 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~----------~~~~~------~~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~-~~~~ 52 (179)
+.||.|.|||++... .+..+ .|+..|.++.|-|-..-++.++ ++-+.. ....
T Consensus 63 gadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~m 142 (397)
T KOG4283|consen 63 GADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKM 142 (397)
T ss_pred CCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeec
Confidence 579999999997532 11111 2667899999999776777777 222222 2334
Q ss_pred cCceeEEEEeeC----CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCE-EEEeccCCcEEEEEcCCC-
Q 038439 53 KKAVSYVKFLSN----DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEY-IACGSESNEVYVYHKEIS- 126 (179)
Q Consensus 53 ~~~i~~~~~~~~----~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~d~~v~vwd~~~~- 126 (179)
++.|.+-+++|- -++++|..+-.|++.|+.+|..-+++.+|...|.++.|+|..++ |++|+.||.|++||++..
T Consensus 143 e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRras 222 (397)
T KOG4283|consen 143 EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRAS 222 (397)
T ss_pred CceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeeccc
Confidence 567777788886 46778888999999999999999999999999999999999887 689999999999999864
Q ss_pred ccccccccCC--CCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439 127 KPVTWHRFSS--PDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 127 ~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
.+...+.... ..........|.+.++.++|..++.++++.+.|.++++|+..
T Consensus 223 gcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~ 276 (397)
T KOG4283|consen 223 GCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNME 276 (397)
T ss_pred ceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecc
Confidence 2222211110 111111233448899999999999999999999999999975
No 115
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.86 E-value=3e-20 Score=135.74 Aligned_cols=162 Identities=12% Similarity=0.117 Sum_probs=139.4
Q ss_pred CCccEEEEEcCCceeEEee----cCCCceeEEEEcCCCCeEEEEeCCCcee-----------eecccCceeEEEEeeC-C
Q 038439 2 AYGKVKVWCTRQEASVLNI----DMKANICCVKYNPGSSNYIAKYQSTAPC-----------VHGHKKAVSYVKFLSN-D 65 (179)
Q Consensus 2 ~d~~i~vwd~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~i~~~~~~~~-~ 65 (179)
..|+|.+|+.++|-....+ .|+++|+.++...-++.+++++..|-.. --.-...+.++.++.. .
T Consensus 468 S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~ 547 (910)
T KOG1539|consen 468 SKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSD 547 (910)
T ss_pred cCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhh
Confidence 4689999999999988888 4899999999988876677776222221 1112356778888888 8
Q ss_pred eEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCccc
Q 038439 66 ELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDED 145 (179)
Q Consensus 66 ~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 145 (179)
.++.+..|-.|+++|..+.+.++.+.+|...++.++|||||+++++++.|++|++||+.++..+..+..
T Consensus 548 l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~v----------- 616 (910)
T KOG1539|consen 548 LLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLV----------- 616 (910)
T ss_pred hhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEec-----------
Confidence 899999999999999999999999999999999999999999999999999999999999999888776
Q ss_pred CCcceEEEEEEccCCCeEEEEeCC-CcEEEEe
Q 038439 146 AGSYFISAVCWKSDSPTMLTANSQ-GTIKVLV 176 (179)
Q Consensus 146 ~~~~~i~~~~~~~~~~~l~~~~~d-g~i~iwd 176 (179)
..++.++.|+|+|.+||+...| .-|++|-
T Consensus 617 --d~~~~sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 617 --DSPCTSLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred --CCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence 6678999999999999999998 6799994
No 116
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.85 E-value=2.9e-20 Score=133.40 Aligned_cols=160 Identities=15% Similarity=0.246 Sum_probs=136.2
Q ss_pred CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe--------CCCcee--eecccCceeEEEEeeCCeEEE
Q 038439 1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY--------QSTAPC--VHGHKKAVSYVKFLSNDELAS 69 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~--------~~~~~~--~~~~~~~i~~~~~~~~~~l~~ 69 (179)
+.|.+|.+|...+..++..+. |+..|.++....++ .++..+ ..+++. +.+|+..|+++...|.+.++|
T Consensus 78 ~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~-~~iSgSWD~TakvW~~~~l~~~l~gH~asVWAv~~l~e~~~vT 156 (745)
T KOG0301|consen 78 GMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDG-TLISGSWDSTAKVWRIGELVYSLQGHTASVWAVASLPENTYVT 156 (745)
T ss_pred cccceEEEEecCCCCchhhhhccccceeeeecCCcC-ceEecccccceEEecchhhhcccCCcchheeeeeecCCCcEEe
Confidence 468999999999999998885 99999999988887 344444 444444 899999999999999999999
Q ss_pred ecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcc
Q 038439 70 ASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSY 149 (179)
Q Consensus 70 ~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (179)
||.|++|++|.- ++.+++|.+|...|+.+++-+++ .|++++.||.|+.|++ +++.+..+. + |..
T Consensus 157 gsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~-----------g-htn 220 (745)
T KOG0301|consen 157 GSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMH-----------G-HTN 220 (745)
T ss_pred ccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeee-----------c-cce
Confidence 999999999985 67889999999999999998875 4788999999999999 566664432 1 277
Q ss_pred eEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439 150 FISAVCWKSDSPTMLTANSQGTIKVLVL 177 (179)
Q Consensus 150 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 177 (179)
.+++++...++..+++++.|++++||+.
T Consensus 221 ~vYsis~~~~~~~Ivs~gEDrtlriW~~ 248 (745)
T KOG0301|consen 221 FVYSISMALSDGLIVSTGEDRTLRIWKK 248 (745)
T ss_pred EEEEEEecCCCCeEEEecCCceEEEeec
Confidence 8999998888999999999999999985
No 117
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.85 E-value=3.1e-20 Score=127.68 Aligned_cols=146 Identities=18% Similarity=0.206 Sum_probs=114.3
Q ss_pred CCCceeEEEEcCCCC-eEEEEe---------CC-------Ccee-eecccCceeEEEEeeC--CeEEEecCCCcEEEEec
Q 038439 22 MKANICCVKYNPGSS-NYIAKY---------QS-------TAPC-VHGHKKAVSYVKFLSN--DELASASTDSTLRLWDV 81 (179)
Q Consensus 22 ~~~~v~~~~~~~~~~-~~~~~~---------~~-------~~~~-~~~~~~~i~~~~~~~~--~~l~~~~~d~~v~iwd~ 81 (179)
+.++|++++|+|... .++++| +- ...+ +..|..+|.++.|+|. ..+++.|.||+|+.-|+
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~ 264 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDF 264 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeee
Confidence 678999999999887 788888 11 1111 7789999999999998 89999999999998887
Q ss_pred CCCc---------------------------------------------ceeeecCCCCCeEEEEEeeC-CCEEEEeccC
Q 038439 82 KENL---------------------------------------------PVRTFRGHMNEKNFVGLTVN-SEYIACGSES 115 (179)
Q Consensus 82 ~~~~---------------------------------------------~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~d 115 (179)
+... ....+..|...|..++++|. ..++++++.|
T Consensus 265 ~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D 344 (498)
T KOG4328|consen 265 EGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLD 344 (498)
T ss_pred cchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccC
Confidence 6430 01122335668999999996 5568999999
Q ss_pred CcEEEEEcCCCccccc--cccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439 116 NEVYVYHKEISKPVTW--HRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVL 177 (179)
Q Consensus 116 ~~v~vwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 177 (179)
++++|||++.-..... +.. ..|...|.+..|+|++-.|++.+.|.+|+|||.
T Consensus 345 ~T~kIWD~R~l~~K~sp~lst----------~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~ds 398 (498)
T KOG4328|consen 345 QTAKIWDLRQLRGKASPFLST----------LPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDS 398 (498)
T ss_pred cceeeeehhhhcCCCCcceec----------ccccceeeeeEEcCCCCceEeeccCCceEEeec
Confidence 9999999997544332 222 123789999999998888999999999999996
No 118
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.85 E-value=8.5e-19 Score=117.86 Aligned_cols=163 Identities=17% Similarity=0.197 Sum_probs=132.8
Q ss_pred ccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe---------CCCcee-----eecccCceeEEEEeeC-CeEE
Q 038439 4 GKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY---------QSTAPC-----VHGHKKAVSYVKFLSN-DELA 68 (179)
Q Consensus 4 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~---------~~~~~~-----~~~~~~~i~~~~~~~~-~~l~ 68 (179)
+.+++.+++++..+..+....+|.++.++.+ +++++- +..+.+ ...+...+.++..++. .+++
T Consensus 68 r~Lkv~~~Kk~~~ICe~~fpt~IL~VrmNr~--RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylA 145 (391)
T KOG2110|consen 68 RKLKVVHFKKKTTICEIFFPTSILAVRMNRK--RLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLA 145 (391)
T ss_pred ceEEEEEcccCceEEEEecCCceEEEEEccc--eEEEEEcccEEEEecccceeehhhhccCCCccceEeeccCCCCceEE
Confidence 4688889888888888888999999999986 566654 334444 2234445555555554 4666
Q ss_pred Ee--cCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCc-EEEEEcCCCccccccccCCCCCCCCccc
Q 038439 69 SA--STDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNE-VYVYHKEISKPVTWHRFSSPDMDDTDED 145 (179)
Q Consensus 69 ~~--~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~-v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 145 (179)
.- ...|.|.+||..+-+++..+..|.+.+.+++|+++|.++|++++.|+ |+|+.+.+++.+.+++....
T Consensus 146 yp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~-------- 217 (391)
T KOG2110|consen 146 YPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY-------- 217 (391)
T ss_pred ecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce--------
Confidence 43 24689999999999999999999999999999999999999999987 68999999999988876433
Q ss_pred CCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439 146 AGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 146 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
...|.+++|+|++++|++.+..++|+||.+.
T Consensus 218 --~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 218 --PVSIYSLSFSPDSQFLAASSNTETVHIFKLE 248 (391)
T ss_pred --eeEEEEEEECCCCCeEEEecCCCeEEEEEec
Confidence 5679999999999999999999999999875
No 119
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.85 E-value=3.1e-20 Score=138.60 Aligned_cols=145 Identities=19% Similarity=0.282 Sum_probs=121.6
Q ss_pred CCCceeEEEEcCCCCeEEEEe------------------------CCCcee--eecccCceeEEEEeeC-CeEEEecCCC
Q 038439 22 MKANICCVKYNPGSSNYIAKY------------------------QSTAPC--VHGHKKAVSYVKFLSN-DELASASTDS 74 (179)
Q Consensus 22 ~~~~v~~~~~~~~~~~~~~~~------------------------~~~~~~--~~~~~~~i~~~~~~~~-~~l~~~~~d~ 74 (179)
++..|.+++.+|++..+.+.| .-.+.+ +..|.+.|+|+.|+|| .+|++||+|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~ 91 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR 91 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence 445699999999995544444 012222 6789999999999999 9999999999
Q ss_pred cEEEEecCC------------------CcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCC
Q 038439 75 TLRLWDVKE------------------NLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSS 136 (179)
Q Consensus 75 ~v~iwd~~~------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~ 136 (179)
.|.||.... .+.+..+.+|.+.|..++|+|++.++++++.|++|.+|+.++.+.+..+.
T Consensus 92 ~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~--- 168 (942)
T KOG0973|consen 92 LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLR--- 168 (942)
T ss_pred eEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeee---
Confidence 999999772 13566788999999999999999999999999999999999996665543
Q ss_pred CCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439 137 PDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 137 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
+| ...|-.+.|.|-|++|++-+.|++|+||.+.
T Consensus 169 --------~H-~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~ 201 (942)
T KOG0973|consen 169 --------GH-QSLVKGVSWDPIGKYFASQSDDRTLKVWRTS 201 (942)
T ss_pred --------cc-cccccceEECCccCeeeeecCCceEEEEEcc
Confidence 22 7789999999999999999999999999853
No 120
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.85 E-value=8e-20 Score=121.16 Aligned_cols=169 Identities=14% Similarity=0.259 Sum_probs=128.7
Q ss_pred CCCccEEEEEcCCceeEEeec---CCC---ceeEEEEcCCCCeEEEEe----------CCCcee---------eecccCc
Q 038439 1 MAYGKVKVWCTRQEASVLNID---MKA---NICCVKYNPGSSNYIAKY----------QSTAPC---------VHGHKKA 55 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~~~~~~~---~~~---~v~~~~~~~~~~~~~~~~----------~~~~~~---------~~~~~~~ 55 (179)
+.|.-|++||.-+++....+. |.+ ...+++|+|||.++++.- +.++.. -.+..+-
T Consensus 130 sr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~gi 209 (406)
T KOG2919|consen 130 SRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGI 209 (406)
T ss_pred cccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccce
Confidence 457889999999999887764 444 357999999997666654 222211 1123567
Q ss_pred eeEEEEeeC--CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEecc-CCcEEEEEcCCCc-cccc
Q 038439 56 VSYVKFLSN--DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSE-SNEVYVYHKEISK-PVTW 131 (179)
Q Consensus 56 i~~~~~~~~--~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-d~~v~vwd~~~~~-~~~~ 131 (179)
|.+++|+|. ..++.++....+-||.-....++..+.+|.+.|+.+.|.++|+.|++|.. |..|..||+|..+ ++..
T Consensus 210 isc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~ 289 (406)
T KOG2919|consen 210 ISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYA 289 (406)
T ss_pred eeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhh
Confidence 889999998 68999999999999988888999999999999999999999999999876 7789999999754 3333
Q ss_pred cccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439 132 HRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
+..+.. .. ..+| -....|++++|++|+.||.|++||+.
T Consensus 290 --L~rhv~-----~T-NQRI-~FDld~~~~~LasG~tdG~V~vwdlk 327 (406)
T KOG2919|consen 290 --LERHVG-----DT-NQRI-LFDLDPKGEILASGDTDGSVRVWDLK 327 (406)
T ss_pred --hhhhcc-----Cc-cceE-EEecCCCCceeeccCCCccEEEEecC
Confidence 322210 00 1122 24457899999999999999999985
No 121
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=7.4e-19 Score=111.77 Aligned_cols=123 Identities=14% Similarity=0.185 Sum_probs=87.1
Q ss_pred ecccCceeEEEEeeC-CeEEEecCCCcEEEEecC----------------------------------------------
Q 038439 50 HGHKKAVSYVKFLSN-DELASASTDSTLRLWDVK---------------------------------------------- 82 (179)
Q Consensus 50 ~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~---------------------------------------------- 82 (179)
+.|.+.|.|.+|+|+ .++++|+.|++|++.-+.
T Consensus 86 khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~i 165 (350)
T KOG0641|consen 86 KHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKI 165 (350)
T ss_pred cccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceE
Confidence 345666777777777 667777777766654332
Q ss_pred ------CCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEE
Q 038439 83 ------ENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCW 156 (179)
Q Consensus 83 ------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 156 (179)
.++..+.+.+|.+-|..+ ++-+|-.|++|+.|.+|++||++-...+.......+.. +-.+..|..++.
T Consensus 166 y~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~-----glessavaav~v 239 (350)
T KOG0641|consen 166 YITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDG-----GLESSAVAAVAV 239 (350)
T ss_pred EEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCC-----CcccceeEEEEE
Confidence 223444455566555443 34467789999999999999999887776654433321 111578999999
Q ss_pred ccCCCeEEEEeCCCcEEEEeec
Q 038439 157 KSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 157 ~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
.|.|++|++|-.|..+.+||++
T Consensus 240 dpsgrll~sg~~dssc~lydir 261 (350)
T KOG0641|consen 240 DPSGRLLASGHADSSCMLYDIR 261 (350)
T ss_pred CCCcceeeeccCCCceEEEEee
Confidence 9999999999999999999986
No 122
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.85 E-value=8.7e-19 Score=120.71 Aligned_cols=164 Identities=9% Similarity=0.015 Sum_probs=120.8
Q ss_pred CCCccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe-----------CCCcee--eecccCceeEEEEeeC-Ce
Q 038439 1 MAYGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY-----------QSTAPC--VHGHKKAVSYVKFLSN-DE 66 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~--~~~~~~~i~~~~~~~~-~~ 66 (179)
+.|+.|++||+.+++.+..+.....+.+++|+|++..+++++ ..++.+ +..+. .+..+.|+|+ +.
T Consensus 8 ~~d~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~~g~~ 86 (300)
T TIGR03866 8 EKDNTISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP-DPELFALHPNGKI 86 (300)
T ss_pred cCCCEEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC-CccEEEECCCCCE
Confidence 468999999999999888888666688999999997766655 222222 22232 3567889999 65
Q ss_pred EE-EecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCC-cEEEEEcCCCccccccccCCCCCCCCcc
Q 038439 67 LA-SASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESN-EVYVYHKEISKPVTWHRFSSPDMDDTDE 144 (179)
Q Consensus 67 l~-~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~-~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 144 (179)
++ +++.++.+++||+++.+.+..+.. ...+..++|+|++.+++++..++ .+.+||.++++.......
T Consensus 87 l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~---------- 155 (300)
T TIGR03866 87 LYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV---------- 155 (300)
T ss_pred EEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc----------
Confidence 54 445689999999998877776653 33467899999999999888765 567789887765543322
Q ss_pred cCCcceEEEEEEccCCCeEEEEe-CCCcEEEEeecC
Q 038439 145 DAGSYFISAVCWKSDSPTMLTAN-SQGTIKVLVLAA 179 (179)
Q Consensus 145 ~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~ 179 (179)
...+..++|+|++++|++++ .++.|++||+++
T Consensus 156 ---~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~ 188 (300)
T TIGR03866 156 ---DQRPRFAEFTADGKELWVSSEIGGTVSVIDVAT 188 (300)
T ss_pred ---CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCc
Confidence 23456789999999886554 589999999863
No 123
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.85 E-value=5.4e-20 Score=128.11 Aligned_cols=165 Identities=16% Similarity=0.209 Sum_probs=129.2
Q ss_pred CCCccEEEEEcCCceeEEee-cCCCceeEEEEcCCCCeEEEEeCCCcee------------eec-ccCceeEEEEeeC--
Q 038439 1 MAYGKVKVWCTRQEASVLNI-DMKANICCVKYNPGSSNYIAKYQSTAPC------------VHG-HKKAVSYVKFLSN-- 64 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~------------~~~-~~~~i~~~~~~~~-- 64 (179)
|..++|+|||++...+.+.+ .|++.|+++.++-...++.++...+..+ +.. ....+.-+.|+|.
T Consensus 98 G~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr 177 (673)
T KOG4378|consen 98 GQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKR 177 (673)
T ss_pred CcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccc
Confidence 45689999999965555555 4889999999998875444443222222 221 2345668899998
Q ss_pred CeEEEecCCCcEEEEecCCCcceeee-cCCCCCeEEEEEeeC-CCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCC
Q 038439 65 DELASASTDSTLRLWDVKENLPVRTF-RGHMNEKNFVGLTVN-SEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDT 142 (179)
Q Consensus 65 ~~l~~~~~d~~v~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~-~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~ 142 (179)
.+|.+++.+|.|.+||+....++..+ +.|..+...++|+|. ..+|++.+.|..|.+||.+..+....+..
T Consensus 178 ~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y-------- 249 (673)
T KOG4378|consen 178 FLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY-------- 249 (673)
T ss_pred eeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeee--------
Confidence 66788999999999999877666554 568889999999995 55678899999999999997666655554
Q ss_pred cccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439 143 DEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 143 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
..+...++|.++|-+|+.|+..|.|..||++
T Consensus 250 -----~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R 280 (673)
T KOG4378|consen 250 -----SHPLSTVAFSECGTYLCAGNSKGELIAYDMR 280 (673)
T ss_pred -----cCCcceeeecCCceEEEeecCCceEEEEecc
Confidence 6678999999999999999999999999987
No 124
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=4.7e-19 Score=116.76 Aligned_cols=152 Identities=17% Similarity=0.217 Sum_probs=123.2
Q ss_pred ceeEEeec-CCCceeEEEEcCCCCeEEEEe----------CCCcee--eecccCceeEEEEeeC-CeEEEecC--CCcEE
Q 038439 14 EASVLNID-MKANICCVKYNPGSSNYIAKY----------QSTAPC--VHGHKKAVSYVKFLSN-DELASAST--DSTLR 77 (179)
Q Consensus 14 ~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~----------~~~~~~--~~~~~~~i~~~~~~~~-~~l~~~~~--d~~v~ 77 (179)
.++.+.+. ....|+++.|+++|..++++. ..++.+ +..++-.+..++|... ..++.++. |.+||
T Consensus 4 ~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIr 83 (311)
T KOG1446|consen 4 FRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIR 83 (311)
T ss_pred cccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceE
Confidence 34445554 478899999999998777765 333444 5556667788888776 66666666 88999
Q ss_pred EEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEc
Q 038439 78 LWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWK 157 (179)
Q Consensus 78 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 157 (179)
..++.+.+.++-|.+|...|.+++.+|-+..+++++.|++|++||++..++.-.+... . -...+|.
T Consensus 84 yLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~------------~--~pi~AfD 149 (311)
T KOG1446|consen 84 YLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS------------G--RPIAAFD 149 (311)
T ss_pred EEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecC------------C--CcceeEC
Confidence 9999999999999999999999999999999999999999999999987776555432 2 2347899
Q ss_pred cCCCeEEEEeCCCcEEEEeecC
Q 038439 158 SDSPTMLTANSQGTIKVLVLAA 179 (179)
Q Consensus 158 ~~~~~l~~~~~dg~i~iwd~~~ 179 (179)
|+|-++|++...+.|++||++.
T Consensus 150 p~GLifA~~~~~~~IkLyD~Rs 171 (311)
T KOG1446|consen 150 PEGLIFALANGSELIKLYDLRS 171 (311)
T ss_pred CCCcEEEEecCCCeEEEEEecc
Confidence 9999999999988999999874
No 125
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.84 E-value=4e-20 Score=125.28 Aligned_cols=145 Identities=17% Similarity=0.205 Sum_probs=122.1
Q ss_pred CCCceeEEEEcCCCCeEEEEe------------------CCCcee--eecccCceeEEEEeeC--CeEEEecCCCcEEEE
Q 038439 22 MKANICCVKYNPGSSNYIAKY------------------QSTAPC--VHGHKKAVSYVKFLSN--DELASASTDSTLRLW 79 (179)
Q Consensus 22 ~~~~v~~~~~~~~~~~~~~~~------------------~~~~~~--~~~~~~~i~~~~~~~~--~~l~~~~~d~~v~iw 79 (179)
|+++|..++|+|..+..+|+| ...+++ +.+|...|.-+.|+|. +.|++++.|..|.+|
T Consensus 80 Ht~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iW 159 (472)
T KOG0303|consen 80 HTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIW 159 (472)
T ss_pred ccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEE
Confidence 788999999999998999987 223445 8999999999999999 899999999999999
Q ss_pred ecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccC
Q 038439 80 DVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSD 159 (179)
Q Consensus 80 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 159 (179)
|+.+++.+.+++ |...|.++.|+.||.++++.+.|..|+|||.++++.+.... .| .+.....+.|-.+
T Consensus 160 nv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~--~h---------eG~k~~Raifl~~ 227 (472)
T KOG0303|consen 160 NVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGV--AH---------EGAKPARAIFLAS 227 (472)
T ss_pred eccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecc--cc---------cCCCcceeEEecc
Confidence 999999999987 99999999999999999999999999999999999887652 11 1445566778888
Q ss_pred CCeEEEEeC---CCcEEEEeec
Q 038439 160 SPTMLTANS---QGTIKVLVLA 178 (179)
Q Consensus 160 ~~~l~~~~~---dg~i~iwd~~ 178 (179)
+..+.+|-. +..+-+||..
T Consensus 228 g~i~tTGfsr~seRq~aLwdp~ 249 (472)
T KOG0303|consen 228 GKIFTTGFSRMSERQIALWDPN 249 (472)
T ss_pred CceeeeccccccccceeccCcc
Confidence 885544433 6678888754
No 126
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=7.3e-19 Score=116.56 Aligned_cols=161 Identities=17% Similarity=0.203 Sum_probs=121.8
Q ss_pred CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe-------------CCC------cee-eecccCceeEE
Q 038439 1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY-------------QST------APC-VHGHKKAVSYV 59 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~-------------~~~------~~~-~~~~~~~i~~~ 59 (179)
|.|.+|.||+++ |+.+..++ ....-+..+.||+|+.++++| +.+ +.. +++|...|..+
T Consensus 206 s~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~ 284 (420)
T KOG2096|consen 206 SLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAA 284 (420)
T ss_pred cCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeee
Confidence 468899999998 88888887 445677889999997666666 111 122 89999999999
Q ss_pred EEeeC-CeEEEecCCCcEEEEecCC-------Ccceeeec----CCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCc
Q 038439 60 KFLSN-DELASASTDSTLRLWDVKE-------NLPVRTFR----GHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISK 127 (179)
Q Consensus 60 ~~~~~-~~l~~~~~d~~v~iwd~~~-------~~~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~ 127 (179)
+|+|+ ..+++.|.||..++||..- .+.+.... .-.+....++++|.|+.|+... ...++++..++++
T Consensus 285 aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~ 363 (420)
T KOG2096|consen 285 AFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGK 363 (420)
T ss_pred eeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCc
Confidence 99999 9999999999999999753 12222221 1123334799999999887654 4679999999988
Q ss_pred cccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEE
Q 038439 128 PVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVL 175 (179)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw 175 (179)
....++- .|+..|.+++|+++|+++++++ |..++++
T Consensus 364 ~~~~~e~-----------~h~~~Is~is~~~~g~~~atcG-dr~vrv~ 399 (420)
T KOG2096|consen 364 DYPELED-----------IHSTTISSISYSSDGKYIATCG-DRYVRVI 399 (420)
T ss_pred cchhHHH-----------hhcCceeeEEecCCCcEEeeec-ceeeeee
Confidence 7766542 2378899999999999999887 4466664
No 127
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=3.3e-19 Score=122.80 Aligned_cols=161 Identities=15% Similarity=0.221 Sum_probs=134.3
Q ss_pred cEEEEEcCCceeEE-eecCCCceeEEEEcCCCCeEEEEe----------CCCcee--eecccCceeEEEEeeC-CeEEEe
Q 038439 5 KVKVWCTRQEASVL-NIDMKANICCVKYNPGSSNYIAKY----------QSTAPC--VHGHKKAVSYVKFLSN-DELASA 70 (179)
Q Consensus 5 ~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~----------~~~~~~--~~~~~~~i~~~~~~~~-~~l~~~ 70 (179)
.|.+|.+....... .+-.+++|.+++-+|.|..+++.+ .+++.+ +.+|-..|+|+.|+.| .+|++|
T Consensus 62 ~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTg 141 (476)
T KOG0646|consen 62 LLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITG 141 (476)
T ss_pred cccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEec
Confidence 56777776554444 334788999999999994444443 666666 8889999999999999 999999
Q ss_pred cCCCcEEEEecCC---------CcceeeecCCCCCeEEEEEeeC--CCEEEEeccCCcEEEEEcCCCccccccccCCCCC
Q 038439 71 STDSTLRLWDVKE---------NLPVRTFRGHMNEKNFVGLTVN--SEYIACGSESNEVYVYHKEISKPVTWHRFSSPDM 139 (179)
Q Consensus 71 ~~d~~v~iwd~~~---------~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~ 139 (179)
+.||.|.+|++.. .++++.+..|.-+|+.+...+- ..++++++.|.++++||+..+..+....+
T Consensus 142 skDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f----- 216 (476)
T KOG0646|consen 142 SKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITF----- 216 (476)
T ss_pred CCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEec-----
Confidence 9999999998742 4677888899999999988764 45799999999999999999998888776
Q ss_pred CCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439 140 DDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 140 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
...+.+++..|-+..+++|+.+|.|.+.++.
T Consensus 217 --------p~si~av~lDpae~~~yiGt~~G~I~~~~~~ 247 (476)
T KOG0646|consen 217 --------PSSIKAVALDPAERVVYIGTEEGKIFQNLLF 247 (476)
T ss_pred --------CCcceeEEEcccccEEEecCCcceEEeeehh
Confidence 6679999999999999999999999987753
No 128
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.83 E-value=1.2e-19 Score=123.09 Aligned_cols=118 Identities=18% Similarity=0.298 Sum_probs=105.2
Q ss_pred eecccCceeEEEEeeC--CeEEEecCCCcEEEEecCCC-------cceeeecCCCCCeEEEEEeeC-CCEEEEeccCCcE
Q 038439 49 VHGHKKAVSYVKFLSN--DELASASTDSTLRLWDVKEN-------LPVRTFRGHMNEKNFVGLTVN-SEYIACGSESNEV 118 (179)
Q Consensus 49 ~~~~~~~i~~~~~~~~--~~l~~~~~d~~v~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~d~~v 118 (179)
+.+|+++|..+.|+|. ..+++||.|.+|.||++... +++..+.+|...|..++|+|. .+.|++++.|+.|
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v 156 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTV 156 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceE
Confidence 7899999999999998 88999999999999998763 456778899999999999997 4568899999999
Q ss_pred EEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439 119 YVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA 179 (179)
Q Consensus 119 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 179 (179)
.+|++.+++.+..+.. ...|++++|+.+|.+|++++.|..|+|||.++
T Consensus 157 ~iWnv~tgeali~l~h-------------pd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~ 204 (472)
T KOG0303|consen 157 SIWNVGTGEALITLDH-------------PDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRR 204 (472)
T ss_pred EEEeccCCceeeecCC-------------CCeEEEEEeccCCceeeeecccceeEEEcCCC
Confidence 9999999998766442 77899999999999999999999999999764
No 129
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.83 E-value=1e-18 Score=126.62 Aligned_cols=166 Identities=17% Similarity=0.221 Sum_probs=137.0
Q ss_pred CCCccEEEEEcCC-ceeEEeec-CCCceeEEEEcCCC--CeEEEEe-------CCCc-----eeeecc-----cCceeEE
Q 038439 1 MAYGKVKVWCTRQ-EASVLNID-MKANICCVKYNPGS--SNYIAKY-------QSTA-----PCVHGH-----KKAVSYV 59 (179)
Q Consensus 1 ~~d~~i~vwd~~~-~~~~~~~~-~~~~v~~~~~~~~~--~~~~~~~-------~~~~-----~~~~~~-----~~~i~~~ 59 (179)
|.|+-|.|+|+.. ..+++++. |...|+++.|.-.| .+++.+| +..+ .++..| ...+..+
T Consensus 523 srdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm 602 (1080)
T KOG1408|consen 523 SRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDM 602 (1080)
T ss_pred cCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEe
Confidence 5789999999864 44666775 78999999998877 5677777 1111 112222 3467899
Q ss_pred EEeeC-CeEEEecCCCcEEEEecCCCcceeeecC---CCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccC
Q 038439 60 KFLSN-DELASASTDSTLRLWDVKENLPVRTFRG---HMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFS 135 (179)
Q Consensus 60 ~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~ 135 (179)
+..|. .++++++.|..|+|||++++++.+.|++ |.+....+...|.|.|+++.+.|.++.++|.-+++++....
T Consensus 603 ~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~-- 680 (1080)
T KOG1408|consen 603 AVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMT-- 680 (1080)
T ss_pred eeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhc--
Confidence 99999 9999999999999999999999999985 45667778899999999999999999999999999986653
Q ss_pred CCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439 136 SPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 136 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
+| ...|+.+.|.+|.+.|++.+.||.|.||.+.
T Consensus 681 ---------GH-sE~VTG~kF~nDCkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 681 ---------GH-SEAVTGVKFLNDCKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred ---------Cc-chheeeeeecccchhheeecCCceEEEEECc
Confidence 22 8899999999999999999999999999874
No 130
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.82 E-value=5.6e-18 Score=112.03 Aligned_cols=161 Identities=15% Similarity=0.261 Sum_probs=125.8
Q ss_pred ccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe----------CCCcee--e--ecccCceeEEEEeeC---Ce
Q 038439 4 GKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY----------QSTAPC--V--HGHKKAVSYVKFLSN---DE 66 (179)
Q Consensus 4 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----------~~~~~~--~--~~~~~~i~~~~~~~~---~~ 66 (179)
++|-|||-...+++.++....+|.++.+.++ +++++- +..+.+ + ....+.+. +..|. ..
T Consensus 75 NkviIWDD~k~~~i~el~f~~~I~~V~l~r~--riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC--~~~~~~~k~~ 150 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELSFNSEIKAVKLRRD--RIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLC--SLCPTSNKSL 150 (346)
T ss_pred ceEEEEecccCcEEEEEEeccceeeEEEcCC--eEEEEecCeEEEEEcCCChhheeeeecccCCCceE--eecCCCCceE
Confidence 5789999888889999999999999999987 455554 122222 1 11122222 23344 34
Q ss_pred EEE-ecCCCcEEEEecCCCcc--eeeecCCCCCeEEEEEeeCCCEEEEeccCCc-EEEEEcCCCccccccccCCCCCCCC
Q 038439 67 LAS-ASTDSTLRLWDVKENLP--VRTFRGHMNEKNFVGLTVNSEYIACGSESNE-VYVYHKEISKPVTWHRFSSPDMDDT 142 (179)
Q Consensus 67 l~~-~~~d~~v~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~-v~vwd~~~~~~~~~~~~~~~~~~~~ 142 (179)
|+. |-.-|.|+|-|+...+. ...+..|.+.|.+++++-+|..+|+++..|+ |+|||.+++.+++.++....
T Consensus 151 LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d----- 225 (346)
T KOG2111|consen 151 LAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVD----- 225 (346)
T ss_pred EEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCc-----
Confidence 443 34568999999987554 4678899999999999999999999999997 78999999999988776443
Q ss_pred cccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439 143 DEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 143 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
...|.+++|+|+..+|+++++.|+++||.++
T Consensus 226 -----~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~ 256 (346)
T KOG2111|consen 226 -----RADIYCIAFSPNSSWLAVSSDKGTLHIFSLR 256 (346)
T ss_pred -----hheEEEEEeCCCccEEEEEcCCCeEEEEEee
Confidence 6789999999999999999999999999875
No 131
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.82 E-value=3.5e-18 Score=110.36 Aligned_cols=109 Identities=17% Similarity=0.294 Sum_probs=86.7
Q ss_pred cCceeEEEEeeC-CeEEE--ecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEecc---CCcEEEEEcCCC
Q 038439 53 KKAVSYVKFLSN-DELAS--ASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSE---SNEVYVYHKEIS 126 (179)
Q Consensus 53 ~~~i~~~~~~~~-~~l~~--~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---d~~v~vwd~~~~ 126 (179)
.++|.+++|+|+ ..|+. |..+..|.+||++ ++.+..+. ...+..+.|+|+|+++++++. .|.|.+||.++.
T Consensus 59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~ 135 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK 135 (194)
T ss_pred CCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 456999999999 66544 4467799999997 66666664 456788999999999998864 467999999987
Q ss_pred ccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeC------CCcEEEEeec
Q 038439 127 KPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANS------QGTIKVLVLA 178 (179)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------dg~i~iwd~~ 178 (179)
+.+.... ...++.++|+|+|+++++++. |+.++||+..
T Consensus 136 ~~i~~~~--------------~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 136 KKISTFE--------------HSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred EEeeccc--------------cCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 7776544 335789999999999998875 7889999863
No 132
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.82 E-value=2.9e-19 Score=117.38 Aligned_cols=128 Identities=23% Similarity=0.344 Sum_probs=105.4
Q ss_pred CCCccEEEEEcCCceeEEeecCCCceeEEEEcCCC--CeEEEEe-----------CCCcee--eecccCceeEEEEeeC-
Q 038439 1 MAYGKVKVWCTRQEASVLNIDMKANICCVKYNPGS--SNYIAKY-----------QSTAPC--VHGHKKAVSYVKFLSN- 64 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~-----------~~~~~~--~~~~~~~i~~~~~~~~- 64 (179)
|-|.+++|||+++.+....|..++.|.+-+++|-. ..++|+| ..+..- +.+|...|.++.|+|.
T Consensus 121 SFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~ 200 (397)
T KOG4283|consen 121 SFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSS 200 (397)
T ss_pred cccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCc
Confidence 45899999999999999999999999999999943 2577777 233333 8899999999999999
Q ss_pred -CeEEEecCCCcEEEEecCCC-cceee--------------ecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCcc
Q 038439 65 -DELASASTDSTLRLWDVKEN-LPVRT--------------FRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKP 128 (179)
Q Consensus 65 -~~l~~~~~d~~v~iwd~~~~-~~~~~--------------~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~ 128 (179)
=.|++|+.||.|++||++.. -+... -..|.+.++.++|..++.++++++.|..+++|+..+|+.
T Consensus 201 e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~n 280 (397)
T KOG4283|consen 201 EWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRN 280 (397)
T ss_pred eeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcc
Confidence 45789999999999999863 12211 224677899999999999999999999999999987753
No 133
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.82 E-value=7.3e-19 Score=118.59 Aligned_cols=171 Identities=17% Similarity=0.278 Sum_probs=124.0
Q ss_pred ccEEEEEcCCceeEEe----ecCCCceeEEEEcCCCCeEEEEe-----------CCC---cee-eecccCceeEEEEeeC
Q 038439 4 GKVKVWCTRQEASVLN----IDMKANICCVKYNPGSSNYIAKY-----------QST---APC-VHGHKKAVSYVKFLSN 64 (179)
Q Consensus 4 ~~i~vwd~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~-----------~~~---~~~-~~~~~~~i~~~~~~~~ 64 (179)
+.|++|...++..... ..|+..|..++|||....+++++ +.+ .++ .++|...|+.|.|+..
T Consensus 234 ~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~ 313 (440)
T KOG0302|consen 234 KGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRR 313 (440)
T ss_pred cceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCC
Confidence 4688888877654321 24889999999999988888887 333 344 7899999999999999
Q ss_pred -CeEEEecCCCcEEEEecCC---CcceeeecCCCCCeEEEEEeeC-CCEEEEeccCCcEEEEEcCCCcccccc---ccCC
Q 038439 65 -DELASASTDSTLRLWDVKE---NLPVRTFRGHMNEKNFVGLTVN-SEYIACGSESNEVYVYHKEISKPVTWH---RFSS 136 (179)
Q Consensus 65 -~~l~~~~~d~~v~iwd~~~---~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~d~~v~vwd~~~~~~~~~~---~~~~ 136 (179)
.+|++|+.||+++|||+++ ++++.+|+-|..+|+++.|+|. ...|++++.|.+|.+||+....-.... ....
T Consensus 314 ~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~ 393 (440)
T KOG0302|consen 314 EPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEG 393 (440)
T ss_pred cceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccc
Confidence 9999999999999999986 5678899999999999999996 556888999999999998753221100 0000
Q ss_pred --CCCCCCcccC-CcceEEEEEEccCC-CeEEEEeCCCcEEEE
Q 038439 137 --PDMDDTDEDA-GSYFISAVCWKSDS-PTMLTANSQGTIKVL 175 (179)
Q Consensus 137 --~~~~~~~~~~-~~~~i~~~~~~~~~-~~l~~~~~dg~i~iw 175 (179)
........-| +...+..+.|+++- .++++.+.|| +.||
T Consensus 394 L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 394 LQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred hhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 0000011111 24567789999854 4677777787 4444
No 134
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=1.5e-18 Score=114.67 Aligned_cols=110 Identities=13% Similarity=0.193 Sum_probs=93.7
Q ss_pred CCCceeEEEEcCCCCeEEEEeCC-----------Ccee--eecccCceeEEEEeeC---CeEEEecCCCcEEEEecCCCc
Q 038439 22 MKANICCVKYNPGSSNYIAKYQS-----------TAPC--VHGHKKAVSYVKFLSN---DELASASTDSTLRLWDVKENL 85 (179)
Q Consensus 22 ~~~~v~~~~~~~~~~~~~~~~~~-----------~~~~--~~~~~~~i~~~~~~~~---~~l~~~~~d~~v~iwd~~~~~ 85 (179)
|.++|++++.+- .++++|.+ ...+ +-.|.+.|+++.|.++ +.|++|+.||.|.+|+....+
T Consensus 42 H~~sitavAVs~---~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~ 118 (362)
T KOG0294|consen 42 HAGSITALAVSG---PYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWE 118 (362)
T ss_pred cccceeEEEecc---eeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeE
Confidence 788999999874 56666622 2222 6678999999999998 499999999999999999999
Q ss_pred ceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCcccccccc
Q 038439 86 PVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRF 134 (179)
Q Consensus 86 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~ 134 (179)
++.+++.|.+.|+.++.+|.+++.++.+.|+.+++||+-+++.-....+
T Consensus 119 ~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L 167 (362)
T KOG0294|consen 119 LLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL 167 (362)
T ss_pred EeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc
Confidence 9999999999999999999999999999999999999988876554444
No 135
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.81 E-value=8.5e-18 Score=117.39 Aligned_cols=159 Identities=14% Similarity=0.222 Sum_probs=127.6
Q ss_pred CCccEEEEEcCCceeEEee-cCCCceeEEEEcCCCCeEEEEe--------------------------------------
Q 038439 2 AYGKVKVWCTRQEASVLNI-DMKANICCVKYNPGSSNYIAKY-------------------------------------- 42 (179)
Q Consensus 2 ~d~~i~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~-------------------------------------- 42 (179)
++|.|.||+..+.+..+.. .|++.|.+++.-.+| .++..|
T Consensus 265 S~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~G-tllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~ 343 (626)
T KOG2106|consen 265 SGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDG-TLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDIL 343 (626)
T ss_pred CCceEEEEeCCCceEEeEeeecCCceEEEEEecCc-cEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEE
Confidence 4789999998776655444 588999999999988 677744
Q ss_pred -------------CCCcee-eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCC
Q 038439 43 -------------QSTAPC-VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSE 107 (179)
Q Consensus 43 -------------~~~~~~-~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 107 (179)
..+-.+ ..+|......++.+|+ ++++|++.|+.+++|+ ..+++.+.. -..++.+++|+|.|
T Consensus 344 vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg- 419 (626)
T KOG2106|consen 344 VGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG- 419 (626)
T ss_pred EeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcc-
Confidence 111111 5678888899999999 9999999999999999 445554433 35568899999999
Q ss_pred EEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439 108 YIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 108 ~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
.++.|...|...+.|.++...+....- ..+++.++|+|+|.+||.|+.|+.|+||-+.
T Consensus 420 ~va~Gt~~G~w~V~d~e~~~lv~~~~d-------------~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs 477 (626)
T KOG2106|consen 420 VVAVGTATGRWFVLDTETQDLVTIHTD-------------NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVS 477 (626)
T ss_pred eEEEeeccceEEEEecccceeEEEEec-------------CCceEEEEEcCCCCEEEEecCCCeEEEEEEC
Confidence 899999999999999998666655443 5679999999999999999999999999764
No 136
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.81 E-value=1.3e-18 Score=119.76 Aligned_cols=163 Identities=18% Similarity=0.269 Sum_probs=130.0
Q ss_pred CCCccEEEEEcCCceeE----Ee-------------e--cCCCceeEEEEcCCCCeEEEEe-----------CCCcee--
Q 038439 1 MAYGKVKVWCTRQEASV----LN-------------I--DMKANICCVKYNPGSSNYIAKY-----------QSTAPC-- 48 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~~~----~~-------------~--~~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~-- 48 (179)
+.|++|.=|++.+++.. .. - .|...+.+++.+||+ .++++| ++.+++
T Consensus 161 sk~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg-kylatgg~d~~v~Iw~~~t~ehv~~ 239 (479)
T KOG0299|consen 161 SKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG-KYLATGGRDRHVQIWDCDTLEHVKV 239 (479)
T ss_pred CCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC-cEEEecCCCceEEEecCcccchhhc
Confidence 46788888998877633 11 0 245679999999999 455555 455566
Q ss_pred eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCc
Q 038439 49 VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISK 127 (179)
Q Consensus 49 ~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~ 127 (179)
+.+|.+.|.+++|-.. ..+++++.|+.|++|++.....+.++.+|+..|..+.-...++.+-+|+.|+++++|++....
T Consensus 240 ~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ees 319 (479)
T KOG0299|consen 240 FKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEES 319 (479)
T ss_pred ccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccc
Confidence 7899999999999988 999999999999999999988899999999999999887778888888899999999995432
Q ss_pred cccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439 128 PVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
.+. +.. + ...+-+++|-. ...+++|+.+|.|.+|++.
T Consensus 320 qli-frg-----------~-~~sidcv~~In-~~HfvsGSdnG~IaLWs~~ 356 (479)
T KOG0299|consen 320 QLI-FRG-----------G-EGSIDCVAFIN-DEHFVSGSDNGSIALWSLL 356 (479)
T ss_pred eee-eeC-----------C-CCCeeeEEEec-ccceeeccCCceEEEeeec
Confidence 221 111 1 66788999874 5668999999999999974
No 137
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.80 E-value=3.7e-18 Score=113.46 Aligned_cols=169 Identities=20% Similarity=0.310 Sum_probs=128.7
Q ss_pred CCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe-----------CCCcee-----eecccCceeEEEEeeC
Q 038439 2 AYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY-----------QSTAPC-----VHGHKKAVSYVKFLSN 64 (179)
Q Consensus 2 ~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~-----~~~~~~~i~~~~~~~~ 64 (179)
.-|.|+|.|+.++++...+. |...|+.+.++|+.++++.++ ++..++ +.+|...|.++.|+++
T Consensus 113 ~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~ 192 (385)
T KOG1034|consen 113 YLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLD 192 (385)
T ss_pred ceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCC
Confidence 34789999999998888775 889999999999988888887 455555 6789999999999999
Q ss_pred -CeEEEecCCCcEEEEecCCCc----------------------------------------------------------
Q 038439 65 -DELASASTDSTLRLWDVKENL---------------------------------------------------------- 85 (179)
Q Consensus 65 -~~l~~~~~d~~v~iwd~~~~~---------------------------------------------------------- 85 (179)
.++++++.|..+++|++...+
T Consensus 193 gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscena 272 (385)
T KOG1034|consen 193 GDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENA 272 (385)
T ss_pred CCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhheeecccCce
Confidence 999999999999999987310
Q ss_pred ------------------------ceeeecCCCCCeEEEEE--eeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCC
Q 038439 86 ------------------------PVRTFRGHMNEKNFVGL--TVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDM 139 (179)
Q Consensus 86 ------------------------~~~~~~~~~~~v~~~~~--~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~ 139 (179)
.+..++-....++.+.| .|.++.|+.|...|.|.+||++..++...-.+....
T Consensus 273 I~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~- 351 (385)
T KOG1034|consen 273 IVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSK- 351 (385)
T ss_pred EEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEecc-
Confidence 00111111234445554 455788999999999999999998774222221110
Q ss_pred CCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439 140 DDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 140 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
....|.+.+|+.|+..|+..++|++|.-||-.
T Consensus 352 -------~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 352 -------SGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred -------ccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 15679999999999999999999999999853
No 138
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=1.2e-17 Score=109.88 Aligned_cols=142 Identities=12% Similarity=0.153 Sum_probs=116.0
Q ss_pred CCCceeEEEEcCCCCeEEEEe----------CCCcee-eecccCceeEEEEeeCCeEEEecCCCcEEEEecCCCcceeee
Q 038439 22 MKANICCVKYNPGSSNYIAKY----------QSTAPC-VHGHKKAVSYVKFLSNDELASASTDSTLRLWDVKENLPVRTF 90 (179)
Q Consensus 22 ~~~~v~~~~~~~~~~~~~~~~----------~~~~~~-~~~~~~~i~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~ 90 (179)
....|.++.|+|.++.|+++. ...... .-.|..++.+.+|.++..+++|+.|+.|+.+|+.+++. ..+
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~-~~i 90 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNE-DQI 90 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCCceEEEeccCceEEEEEecCCcc-eee
Confidence 467799999999988888887 111111 44688999999999888999999999999999998764 455
Q ss_pred cCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCC
Q 038439 91 RGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQG 170 (179)
Q Consensus 91 ~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 170 (179)
..|..+++++.+++....+++|+.|+.|++||.+.......+.. ...|.++.. .++.|++|+.+.
T Consensus 91 gth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-------------~kkVy~~~v--~g~~LvVg~~~r 155 (323)
T KOG1036|consen 91 GTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-------------GKKVYCMDV--SGNRLVVGTSDR 155 (323)
T ss_pred ccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-------------CceEEEEec--cCCEEEEeecCc
Confidence 67899999999999888899999999999999998554444332 447877766 578899999999
Q ss_pred cEEEEeecC
Q 038439 171 TIKVLVLAA 179 (179)
Q Consensus 171 ~i~iwd~~~ 179 (179)
.+.+||+++
T Consensus 156 ~v~iyDLRn 164 (323)
T KOG1036|consen 156 KVLIYDLRN 164 (323)
T ss_pred eEEEEEccc
Confidence 999999975
No 139
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.80 E-value=3.8e-18 Score=123.76 Aligned_cols=145 Identities=18% Similarity=0.186 Sum_probs=111.3
Q ss_pred CceeEEEEcCCCCeEEEEeCCC-----------cee--eecccCceeEEEEeeC----CeEEEecCCCcEEEEecCCC-c
Q 038439 24 ANICCVKYNPGSSNYIAKYQST-----------APC--VHGHKKAVSYVKFLSN----DELASASTDSTLRLWDVKEN-L 85 (179)
Q Consensus 24 ~~v~~~~~~~~~~~~~~~~~~~-----------~~~--~~~~~~~i~~~~~~~~----~~l~~~~~d~~v~iwd~~~~-~ 85 (179)
-.+.+++.+|+| +.+++|+.+ +.+ +.+|+..|.|+.|+.. .+|++++.|..|.+||+... .
T Consensus 460 ~G~R~~~vSp~g-qhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~ 538 (1080)
T KOG1408|consen 460 FGFRALAVSPDG-QHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYD 538 (1080)
T ss_pred cceEEEEECCCc-ceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccc
Confidence 458999999999 566776111 111 7899999999999855 68999999999999998542 2
Q ss_pred ceeeecCCCC-------------------------------------------------CeEEEEEeeCCCEEEEeccCC
Q 038439 86 PVRTFRGHMN-------------------------------------------------EKNFVGLTVNSEYIACGSESN 116 (179)
Q Consensus 86 ~~~~~~~~~~-------------------------------------------------~v~~~~~~~~~~~~~~~~~d~ 116 (179)
+++++.+|.+ .++.++..|..+++++++.|+
T Consensus 539 l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDr 618 (1080)
T KOG1408|consen 539 LVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDR 618 (1080)
T ss_pred hhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEeccc
Confidence 2222222222 355677778888889999999
Q ss_pred cEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439 117 EVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 117 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
.|+|||+++++....++-... |.+....+...|.|.|+++.+.|.++.++|.-
T Consensus 619 nirif~i~sgKq~k~FKgs~~---------~eG~lIKv~lDPSgiY~atScsdktl~~~Df~ 671 (1080)
T KOG1408|consen 619 NIRIFDIESGKQVKSFKGSRD---------HEGDLIKVILDPSGIYLATSCSDKTLCFVDFV 671 (1080)
T ss_pred ceEEEeccccceeeeeccccc---------CCCceEEEEECCCccEEEEeecCCceEEEEec
Confidence 999999999998877664321 15677889999999999999999999999974
No 140
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.80 E-value=7.9e-18 Score=120.24 Aligned_cols=176 Identities=15% Similarity=0.183 Sum_probs=121.4
Q ss_pred CCccEEEEEcCCcee-------EEeecCCCceeEEEEcCCCCeEEEEe-----------CCCcee----eecccCceeEE
Q 038439 2 AYGKVKVWCTRQEAS-------VLNIDMKANICCVKYNPGSSNYIAKY-----------QSTAPC----VHGHKKAVSYV 59 (179)
Q Consensus 2 ~d~~i~vwd~~~~~~-------~~~~~~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~----~~~~~~~i~~~ 59 (179)
+||.|.++|.....- ..-+.|...|..+.|.| |...++.. ...+.+ +.+|...+.++
T Consensus 72 E~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~ 150 (720)
T KOG0321|consen 72 EDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSE 150 (720)
T ss_pred CCCceeeecchhhhcchhhhhhcccccccceeEeeccCC-CceeEEEccCCceeeeeeeccceeecceeecccccccchh
Confidence 689999999765332 12234899999999999 44555443 222333 67899999999
Q ss_pred EEeeC--CeEEEecCCCcEEEEecCCCc---------------------------ceeeecCCCCCeEE---EEEeeCCC
Q 038439 60 KFLSN--DELASASTDSTLRLWDVKENL---------------------------PVRTFRGHMNEKNF---VGLTVNSE 107 (179)
Q Consensus 60 ~~~~~--~~l~~~~~d~~v~iwd~~~~~---------------------------~~~~~~~~~~~v~~---~~~~~~~~ 107 (179)
+|.|. ..|++|+.|+.+.|||++-.. .+..-+.+...+.+ +.+..|..
T Consensus 151 cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~ 230 (720)
T KOG0321|consen 151 CFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDES 230 (720)
T ss_pred hhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccc
Confidence 99999 789999999999999987421 01112223444554 56677888
Q ss_pred EEEEecc-CCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439 108 YIACGSE-SNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA 179 (179)
Q Consensus 108 ~~~~~~~-d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 179 (179)
.|++++. |+.|+|||++...................... ...+.++.....|.+|++.+.|+.|+.||+.+
T Consensus 231 tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skr-s~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s 302 (720)
T KOG0321|consen 231 TLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKR-SVGQVNLILDSSGTYLFASCTDNSIYFYNMRS 302 (720)
T ss_pred eeeeccCCCcceEEEeecccccccccCCCcccCccCcccc-eeeeEEEEecCCCCeEEEEecCCcEEEEeccc
Confidence 8998888 99999999997654332221111000000011 44678888888899999999999999999863
No 141
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=1.5e-17 Score=118.21 Aligned_cols=165 Identities=18% Similarity=0.234 Sum_probs=132.8
Q ss_pred CCCccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeE-EEEe-------------------------------------
Q 038439 1 MAYGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNY-IAKY------------------------------------- 42 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~------------------------------------- 42 (179)
|+||+|+||.+.++.++.++...+.|.|++|+|.+..- ++++
T Consensus 419 sdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~ 498 (733)
T KOG0650|consen 419 SDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAA 498 (733)
T ss_pred CCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCccc
Confidence 68999999999999999999999999999999987543 3333
Q ss_pred ------------CCCceeeecccCceeEEEEeeC-CeEEEecCC---CcEEEEecCCCcceeeecCCCCCeEEEEEeeCC
Q 038439 43 ------------QSTAPCVHGHKKAVSYVKFLSN-DELASASTD---STLRLWDVKENLPVRTFRGHMNEKNFVGLTVNS 106 (179)
Q Consensus 43 ------------~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~d---~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 106 (179)
..+-++.-.|...|..+.|+.. .+|++...+ ..|.|.++...+....|+...+.+.++.|+|..
T Consensus 499 ~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~ 578 (733)
T KOG0650|consen 499 VVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSK 578 (733)
T ss_pred ceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCC
Confidence 0000113457788999999999 888887653 478899998776666676667789999999998
Q ss_pred CEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439 107 EYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 107 ~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
.++++++. ..|++||+...+.+..+... ...|..++.+|.|..|+.|+.|+.+..||+.
T Consensus 579 p~lfVaTq-~~vRiYdL~kqelvKkL~tg------------~kwiS~msihp~GDnli~gs~d~k~~WfDld 637 (733)
T KOG0650|consen 579 PYLFVATQ-RSVRIYDLSKQELVKKLLTG------------SKWISSMSIHPNGDNLILGSYDKKMCWFDLD 637 (733)
T ss_pred ceEEEEec-cceEEEehhHHHHHHHHhcC------------CeeeeeeeecCCCCeEEEecCCCeeEEEEcc
Confidence 88888774 67999999887666655432 6689999999999999999999999999974
No 142
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=4.2e-17 Score=117.13 Aligned_cols=171 Identities=12% Similarity=0.142 Sum_probs=127.6
Q ss_pred CCccEEEEEcCCceeE-Eee--cCCCceeEEEEcCCCCeEEEEe----------CCCcee--eecccCceeEEEEeeC-C
Q 038439 2 AYGKVKVWCTRQEASV-LNI--DMKANICCVKYNPGSSNYIAKY----------QSTAPC--VHGHKKAVSYVKFLSN-D 65 (179)
Q Consensus 2 ~d~~i~vwd~~~~~~~-~~~--~~~~~v~~~~~~~~~~~~~~~~----------~~~~~~--~~~~~~~i~~~~~~~~-~ 65 (179)
.||.|.+|++...=.. ..+ ...+.|.+++|++.+ +|+.+| .+.+++ +....+.|++++.+|. .
T Consensus 45 t~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~-RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~ 123 (691)
T KOG2048|consen 45 TDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGG-RLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENT 123 (691)
T ss_pred cCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCC-eEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccc
Confidence 5899999999875332 233 356789999999776 899888 333444 6667789999999999 8
Q ss_pred eEEEecCCCcEEEEecCCCccee--eecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCc
Q 038439 66 ELASASTDSTLRLWDVKENLPVR--TFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTD 143 (179)
Q Consensus 66 ~l~~~~~d~~v~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~ 143 (179)
.++.|+.||.+..++...++... .+....+.+.+++|+|++..++.|+.||.|++||...+..+......-.. ..
T Consensus 124 ~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~---l~ 200 (691)
T KOG2048|consen 124 ILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDR---LS 200 (691)
T ss_pred eEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccc---cc
Confidence 99999999977777766654432 23334678999999999999999999999999999998876632221111 00
Q ss_pred ccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439 144 EDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 144 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
... ..-|+++.|-.+ ..|++|...|+|.+||..
T Consensus 201 k~~-~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~ 233 (691)
T KOG2048|consen 201 KRE-PTIVWSVLFLRD-STIASGDSAGTVTFWDSI 233 (691)
T ss_pred cCC-ceEEEEEEEeec-CcEEEecCCceEEEEccc
Confidence 001 556888888755 568999999999999964
No 143
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.80 E-value=7.2e-18 Score=110.51 Aligned_cols=175 Identities=16% Similarity=0.301 Sum_probs=126.5
Q ss_pred CCccEEEEEcCCcee-EEee------cCCCceeEEEEcC--CCCeEEEEe---------CCCcee---eecccCceeEEE
Q 038439 2 AYGKVKVWCTRQEAS-VLNI------DMKANICCVKYNP--GSSNYIAKY---------QSTAPC---VHGHKKAVSYVK 60 (179)
Q Consensus 2 ~d~~i~vwd~~~~~~-~~~~------~~~~~v~~~~~~~--~~~~~~~~~---------~~~~~~---~~~~~~~i~~~~ 60 (179)
.|+.|.+|++..+.. +..+ .+....++-+|+| ++..+.+++ ++.+.. -.+|...+..+.
T Consensus 142 ~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlD 221 (370)
T KOG1007|consen 142 DDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLD 221 (370)
T ss_pred ccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeecc
Confidence 478899999987654 3333 2456688999999 554555554 333333 567888999999
Q ss_pred EeeC--CeEEEecCCCcEEEEecCC-CcceeeecCCCCCeEEEEEeeC-CCEEEEeccCCcEEEEEcCCCccccccccCC
Q 038439 61 FLSN--DELASASTDSTLRLWDVKE-NLPVRTFRGHMNEKNFVGLTVN-SEYIACGSESNEVYVYHKEISKPVTWHRFSS 136 (179)
Q Consensus 61 ~~~~--~~l~~~~~d~~v~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~ 136 (179)
|+|+ -.|++|+.|+.|++||.+. ..+++.+.+|...|+++.|+|. .+++++|+.|..|.+|...+-...+.+....
T Consensus 222 fNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~ 301 (370)
T KOG1007|consen 222 FNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFED 301 (370)
T ss_pred CCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEecccccccccccccc
Confidence 9999 6789999999999999986 5678899999999999999995 6778999999999999865432111111111
Q ss_pred C------------------CCCCCcccCCcceEEEEEEcc-CCCeEEEEeCCCcEEEEee
Q 038439 137 P------------------DMDDTDEDAGSYFISAVCWKS-DSPTMLTANSQGTIKVLVL 177 (179)
Q Consensus 137 ~------------------~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~ 177 (179)
. ........ |...|++++|+. +.=.+++-+.||++.|=.+
T Consensus 302 dese~e~~dseer~kpL~dg~l~tyde-hEDSVY~~aWSsadPWiFASLSYDGRviIs~V 360 (370)
T KOG1007|consen 302 DESESEDEDSEERVKPLQDGQLETYDE-HEDSVYALAWSSADPWIFASLSYDGRVIISSV 360 (370)
T ss_pred ccccCcchhhHHhcccccccccccccc-cccceEEEeeccCCCeeEEEeccCceEEeecC
Confidence 0 01112233 388999999987 4456678899999887443
No 144
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.79 E-value=1.6e-18 Score=124.35 Aligned_cols=166 Identities=15% Similarity=0.208 Sum_probs=128.3
Q ss_pred CCccEEEEEcCCcee-----EEeecCCCceeEEEEcCCCCeEEEEe--------------------CCCceeeecccCce
Q 038439 2 AYGKVKVWCTRQEAS-----VLNIDMKANICCVKYNPGSSNYIAKY--------------------QSTAPCVHGHKKAV 56 (179)
Q Consensus 2 ~d~~i~vwd~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~i 56 (179)
.-|.|-||+++..-. +-.+..+..|+.+.|.|-...-++++ .+.+.++..|...|
T Consensus 601 ~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI 680 (1012)
T KOG1445|consen 601 SGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKI 680 (1012)
T ss_pred CCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceE
Confidence 457889999876432 23344677899999999666666655 11122288999999
Q ss_pred eEEEEeeC--CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCcccccccc
Q 038439 57 SYVKFLSN--DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRF 134 (179)
Q Consensus 57 ~~~~~~~~--~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~ 134 (179)
+++.|+|- ..|++++.|-+|++||++..+....+.+|...|..++|+|+|+.+++.+.||.|++|..++++... ++-
T Consensus 681 ~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv-~Eg 759 (1012)
T KOG1445|consen 681 TSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPV-YEG 759 (1012)
T ss_pred EEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCcc-ccC
Confidence 99999998 899999999999999999999888999999999999999999999999999999999999865421 222
Q ss_pred CCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCC----cEEEEee
Q 038439 135 SSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQG----TIKVLVL 177 (179)
Q Consensus 135 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg----~i~iwd~ 177 (179)
..+. +..--.+.|..+|+++++.+.|. .|.+||.
T Consensus 760 ~gpv---------gtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~A 797 (1012)
T KOG1445|consen 760 KGPV---------GTRGARILWACDGRIVIVVGFDKSSERQVQMYDA 797 (1012)
T ss_pred CCCc---------cCcceeEEEEecCcEEEEecccccchhhhhhhhh
Confidence 2211 23345577888999998887764 4556653
No 145
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=9.5e-18 Score=111.15 Aligned_cols=147 Identities=17% Similarity=0.304 Sum_probs=115.7
Q ss_pred EeecCCCceeEEEEcCCCCeEEEEe-CCCcee------------eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCC
Q 038439 18 LNIDMKANICCVKYNPGSSNYIAKY-QSTAPC------------VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKE 83 (179)
Q Consensus 18 ~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~------------~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~ 83 (179)
.++.+.. ..|+.|++-| .++|+| ..++.+ +.+|..+|++++|+++ +.|+|+|.|..+.+||+..
T Consensus 19 ~tld~~~-a~~~~Fs~~G-~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~ 96 (405)
T KOG1273|consen 19 HTLDNPL-AECCQFSRWG-DYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLK 96 (405)
T ss_pred eeccCCc-cceEEeccCc-ceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccC
Confidence 3444444 8899999999 677776 333332 7789999999999999 9999999999999999998
Q ss_pred CcceeeecCCCC-----------------------------------------------CeEEEEEeeCCCEEEEeccCC
Q 038439 84 NLPVRTFRGHMN-----------------------------------------------EKNFVGLTVNSEYIACGSESN 116 (179)
Q Consensus 84 ~~~~~~~~~~~~-----------------------------------------------~v~~~~~~~~~~~~~~~~~d~ 116 (179)
+.+++.+.- .+ ...+..|.+.|++|++|...|
T Consensus 97 gs~l~rirf-~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKG 175 (405)
T KOG1273|consen 97 GSPLKRIRF-DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKG 175 (405)
T ss_pred CCceeEEEc-cCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcc
Confidence 865544321 00 011123667789999999999
Q ss_pred cEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439 117 EVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 117 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
.+.++|..+.+++..++... ...|.++.++..|+.|+.-+.|..|+.|+++
T Consensus 176 kllv~~a~t~e~vas~rits-----------~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~ 226 (405)
T KOG1273|consen 176 KLLVYDAETLECVASFRITS-----------VQAIKQIIVSRKGRFLIINTSDRVIRTYEIS 226 (405)
T ss_pred eEEEEecchheeeeeeeech-----------heeeeEEEEeccCcEEEEecCCceEEEEehh
Confidence 99999999998888777642 2578899999999999999999999999975
No 146
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.79 E-value=8.9e-18 Score=120.91 Aligned_cols=122 Identities=23% Similarity=0.330 Sum_probs=102.2
Q ss_pred eecccCceeEEEEeeC-CeEEEecCCC-----cEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEE
Q 038439 49 VHGHKKAVSYVKFLSN-DELASASTDS-----TLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYH 122 (179)
Q Consensus 49 ~~~~~~~i~~~~~~~~-~~l~~~~~d~-----~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd 122 (179)
+.+|...|.+++.+|+ +++++++... .|++|+..+...++.+..|.-.|+.++|+|||++|++.+.|+++.+|.
T Consensus 521 LYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~ 600 (764)
T KOG1063|consen 521 LYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYE 600 (764)
T ss_pred hccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeee
Confidence 6688899999999999 8999987644 589999998888888999999999999999999999999999999999
Q ss_pred cCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439 123 KEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
...... ..+.+.. ...|..-|++..|+|++.++++++.|.+|++|...
T Consensus 601 ~~~~~~-~e~~fa~-------~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~ 648 (764)
T KOG1063|consen 601 VQEDIK-DEFRFAC-------LKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEP 648 (764)
T ss_pred eecccc-hhhhhcc-------ccccceEEEEcccCcccceeEEecCCceEEEEecc
Confidence 854322 2222111 13348889999999999999999999999999764
No 147
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=4.6e-18 Score=117.30 Aligned_cols=169 Identities=12% Similarity=0.182 Sum_probs=132.4
Q ss_pred CCCccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEeCCCcee-e----------ecccCce--eEEEEeeC-Ce
Q 038439 1 MAYGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKYQSTAPC-V----------HGHKKAV--SYVKFLSN-DE 66 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~----------~~~~~~i--~~~~~~~~-~~ 66 (179)
|..|.|.|....+++.+.++...+.|..++|+.++..+++++.+++.. + ..-.+.| ++++.+++ .+
T Consensus 322 G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~y 401 (514)
T KOG2055|consen 322 GNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSY 401 (514)
T ss_pred ccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCce
Confidence 467889999999999999999999999999999999999988444332 0 0112223 45666777 99
Q ss_pred EEEecCCCcEEEEecCC------CcceeeecCCCCCeEEEEEeeCCCEEEEecc--CCcEEEEEcCCCccccccccCCCC
Q 038439 67 LASASTDSTLRLWDVKE------NLPVRTFRGHMNEKNFVGLTVNSEYIACGSE--SNEVYVYHKEISKPVTWHRFSSPD 138 (179)
Q Consensus 67 l~~~~~d~~v~iwd~~~------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--d~~v~vwd~~~~~~~~~~~~~~~~ 138 (179)
|++||..|.|.|||..+ .+++..+..-...|.++.|+|+++.++.++. ...+++-.+.+......+......
T Consensus 402 lA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~ 481 (514)
T KOG2055|consen 402 LATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTK 481 (514)
T ss_pred EEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCc
Confidence 99999999999999754 4566666666778999999999999887765 677999888776555444332111
Q ss_pred CCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439 139 MDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 139 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
-+.++|++|+|.+.+|+.|..+|++.+|.|.
T Consensus 482 ---------vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 482 ---------VGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred ---------ccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 4579999999999999999999999999874
No 148
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.79 E-value=1.8e-18 Score=121.47 Aligned_cols=124 Identities=22% Similarity=0.354 Sum_probs=96.9
Q ss_pred CCCceeEEEEcCCCCeEEEEe---------------------------------------CCCcee--eecccCceeEEE
Q 038439 22 MKANICCVKYNPGSSNYIAKY---------------------------------------QSTAPC--VHGHKKAVSYVK 60 (179)
Q Consensus 22 ~~~~v~~~~~~~~~~~~~~~~---------------------------------------~~~~~~--~~~~~~~i~~~~ 60 (179)
.+..|++++|-|.++.++.+. ....|+ +.--...|+.++
T Consensus 218 ~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~ 297 (636)
T KOG2394|consen 218 NKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFA 297 (636)
T ss_pred cccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEecccccccee
Confidence 347799999998776666655 111233 222345788999
Q ss_pred EeeC-CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCC
Q 038439 61 FLSN-DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDM 139 (179)
Q Consensus 61 ~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~ 139 (179)
|+|| .+|++.+.||.+||||+.+.+++..++..-+...|++|+|||+||++|++|..|.||.+...+.+..-.
T Consensus 298 FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGq------ 371 (636)
T KOG2394|consen 298 FSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQ------ 371 (636)
T ss_pred EcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecc------
Confidence 9999 999999999999999999888887888778889999999999999999999999999998877654321
Q ss_pred CCCcccCCcceEEEEEEc
Q 038439 140 DDTDEDAGSYFISAVCWK 157 (179)
Q Consensus 140 ~~~~~~~~~~~i~~~~~~ 157 (179)
+ |...|+.++|.
T Consensus 372 -----G-HkSWVs~VaFD 383 (636)
T KOG2394|consen 372 -----G-HKSWVSVVAFD 383 (636)
T ss_pred -----c-cccceeeEeec
Confidence 1 15566666665
No 149
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=2.8e-18 Score=114.42 Aligned_cols=175 Identities=18% Similarity=0.284 Sum_probs=128.0
Q ss_pred CCCccEEEEEcCCceeEEeec---C-CCceeEEEEcCCCCeEEEEe---------------CCCce-e---eecccCcee
Q 038439 1 MAYGKVKVWCTRQEASVLNID---M-KANICCVKYNPGSSNYIAKY---------------QSTAP-C---VHGHKKAVS 57 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~~~~~~~---~-~~~v~~~~~~~~~~~~~~~~---------------~~~~~-~---~~~~~~~i~ 57 (179)
+.||+|++||++.......+. + ..+..+++.+..+ +++++| +..+. + ...|...|+
T Consensus 91 ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~-~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT 169 (376)
T KOG1188|consen 91 SSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKK-NIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVT 169 (376)
T ss_pred ccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcC-CeEEeccccccCceEEEEEEeccccchhhhhhhhccCcce
Confidence 479999999999876554443 2 2467788877666 688887 33333 4 678999999
Q ss_pred EEEEeeC--CeEEEecCCCcEEEEecCCC---cceeeecCCCCCeEEEEEeeCC-CEEEEeccCCcEEEEEcCCCccccc
Q 038439 58 YVKFLSN--DELASASTDSTLRLWDVKEN---LPVRTFRGHMNEKNFVGLTVNS-EYIACGSESNEVYVYHKEISKPVTW 131 (179)
Q Consensus 58 ~~~~~~~--~~l~~~~~d~~v~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~d~~v~vwd~~~~~~~~~ 131 (179)
+++|+|. ++|++||.||.|.+||+... ..+...-.+.+.|..+.|..++ +.|.+-+..+...+|+++.+.+...
T Consensus 170 ~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~ 249 (376)
T KOG1188|consen 170 QLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETW 249 (376)
T ss_pred eEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhc
Confidence 9999999 89999999999999999753 2333444567789999998876 4578888899999999987764433
Q ss_pred cccCCC--------------------------------------------------CCCCCcccCCcceEEEEEEccCCC
Q 038439 132 HRFSSP--------------------------------------------------DMDDTDEDAGSYFISAVCWKSDSP 161 (179)
Q Consensus 132 ~~~~~~--------------------------------------------------~~~~~~~~~~~~~i~~~~~~~~~~ 161 (179)
.+.... .......++|..-|+++.|...+.
T Consensus 250 ~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~ 329 (376)
T KOG1188|consen 250 LENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKND 329 (376)
T ss_pred ccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccc
Confidence 221110 111122333456677778887889
Q ss_pred eEEEEeCCCcEEEEe
Q 038439 162 TMLTANSQGTIKVLV 176 (179)
Q Consensus 162 ~l~~~~~dg~i~iwd 176 (179)
.+++|+.||.+.+|.
T Consensus 330 ~l~TGGEDG~l~~Wk 344 (376)
T KOG1188|consen 330 VLYTGGEDGLLQAWK 344 (376)
T ss_pred eeeccCCCceEEEEe
Confidence 999999999999997
No 150
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=4e-17 Score=107.75 Aligned_cols=175 Identities=16% Similarity=0.278 Sum_probs=115.9
Q ss_pred CCCccEEEEEcCCc--e--eEEeec-CCCceeEEEEcC-CCCeEEEEe-----------------CCCc----ee-eecc
Q 038439 1 MAYGKVKVWCTRQE--A--SVLNID-MKANICCVKYNP-GSSNYIAKY-----------------QSTA----PC-VHGH 52 (179)
Q Consensus 1 ~~d~~i~vwd~~~~--~--~~~~~~-~~~~v~~~~~~~-~~~~~~~~~-----------------~~~~----~~-~~~~ 52 (179)
|.|++|+|||..+. + +..... |.+.|..+.|.+ .-.+++|+. ..++ .. +...
T Consensus 32 SsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~Ds 111 (361)
T KOG2445|consen 32 SSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDS 111 (361)
T ss_pred cCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecC
Confidence 57899999996433 2 333333 788899999954 323556655 0010 11 4455
Q ss_pred cCceeEEEEeeC---CeEEEecCCCcEEEEecCCC---------------------------------------------
Q 038439 53 KKAVSYVKFLSN---DELASASTDSTLRLWDVKEN--------------------------------------------- 84 (179)
Q Consensus 53 ~~~i~~~~~~~~---~~l~~~~~d~~v~iwd~~~~--------------------------------------------- 84 (179)
...|+.+.|.|. -.+++++.||.+|||+....
T Consensus 112 rssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs 191 (361)
T KOG2445|consen 112 RSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGS 191 (361)
T ss_pred CcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEc
Confidence 677889999988 35788888999999876431
Q ss_pred ----------------------cceeeecCCCCCeEEEEEeeC-C---CEEEEeccCCcEEEEEcCCCc-cccccccCCC
Q 038439 85 ----------------------LPVRTFRGHMNEKNFVGLTVN-S---EYIACGSESNEVYVYHKEISK-PVTWHRFSSP 137 (179)
Q Consensus 85 ----------------------~~~~~~~~~~~~v~~~~~~~~-~---~~~~~~~~d~~v~vwd~~~~~-~~~~~~~~~~ 137 (179)
..+.++..|..+|+.++|.|+ | ..||+++.|| |+||.++... .+..-+...+
T Consensus 192 ~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~ 270 (361)
T KOG2445|consen 192 DEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAP 270 (361)
T ss_pred ccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCC
Confidence 011223356778999999997 3 4589999999 9999998522 1111000000
Q ss_pred --------CCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439 138 --------DMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVL 177 (179)
Q Consensus 138 --------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 177 (179)
.......+| .+.|+.++|+-.|..|++.+.||.+++|..
T Consensus 271 ~~~~~l~v~~vs~~~~H-~~~VWrv~wNmtGtiLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 271 DLMTDLPVEKVSELDDH-NGEVWRVRWNMTGTILSSTGDDGCVRLWKA 317 (361)
T ss_pred CCccccceEEeeeccCC-CCceEEEEEeeeeeEEeecCCCceeeehhh
Confidence 011112333 889999999999999999999999999963
No 151
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=1.8e-17 Score=114.44 Aligned_cols=166 Identities=13% Similarity=0.170 Sum_probs=130.6
Q ss_pred CCCccEEEEEcCC--ceeEEeec-CCCceeEEEEcCCCC-eEEEEe----------CCCc--ee--eecc-cCceeEEEE
Q 038439 1 MAYGKVKVWCTRQ--EASVLNID-MKANICCVKYNPGSS-NYIAKY----------QSTA--PC--VHGH-KKAVSYVKF 61 (179)
Q Consensus 1 ~~d~~i~vwd~~~--~~~~~~~~-~~~~v~~~~~~~~~~-~~~~~~----------~~~~--~~--~~~~-~~~i~~~~~ 61 (179)
|-||+++||-+.. ...++.+. .+.+|.+.+|+|+|. .++++| .+.+ .+ ..++ ...+..+..
T Consensus 232 G~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeV 311 (514)
T KOG2055|consen 232 GLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEV 311 (514)
T ss_pred cCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEe
Confidence 4689999998764 34555665 678999999999998 455554 1111 11 2333 345677888
Q ss_pred eeC-CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCC
Q 038439 62 LSN-DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMD 140 (179)
Q Consensus 62 ~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~ 140 (179)
+++ ++++..+..|.|.+.-..+++.+.+++. .+.+..+.|+.|++.|++++.+|.|.+||++...++..+...+
T Consensus 312 Shd~~fia~~G~~G~I~lLhakT~eli~s~Ki-eG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G---- 386 (514)
T KOG2055|consen 312 SHDSNFIAIAGNNGHIHLLHAKTKELITSFKI-EGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDG---- 386 (514)
T ss_pred cCCCCeEEEcccCceEEeehhhhhhhhheeee-ccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecC----
Confidence 999 9999999999999999999999999874 7789999999999999999999999999999987776665421
Q ss_pred CCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439 141 DTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 141 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
.-.-++++.++++.+||+|+..|.|.|||.+
T Consensus 387 -------~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~ 417 (514)
T KOG2055|consen 387 -------SVHGTSLCISLNGSYLATGSDSGIVNIYDGN 417 (514)
T ss_pred -------ccceeeeeecCCCceEEeccCcceEEEeccc
Confidence 2234567778999999999999999999964
No 152
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.78 E-value=5e-18 Score=116.49 Aligned_cols=144 Identities=19% Similarity=0.228 Sum_probs=116.0
Q ss_pred CCCceeEEEEcCCCCeEEEEe-----------CCCcee--eecccCceeEEEEeeC--CeEEEecCCCcEEEEecCCCcc
Q 038439 22 MKANICCVKYNPGSSNYIAKY-----------QSTAPC--VHGHKKAVSYVKFLSN--DELASASTDSTLRLWDVKENLP 86 (179)
Q Consensus 22 ~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~--~~~~~~~i~~~~~~~~--~~l~~~~~d~~v~iwd~~~~~~ 86 (179)
|+..|.++.|+..-..++++| ..++|. +..|++.|.++.|+|. ..|++|+.|++|.+.|.+....
T Consensus 242 HTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~ 321 (463)
T KOG0270|consen 242 HTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSN 321 (463)
T ss_pred chHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccc
Confidence 677889999999988899998 556666 7779999999999999 8899999999999999995322
Q ss_pred e-eeecCCCCCeEEEEEeeCCC-EEEEeccCCcEEEEEcCCC-ccccccccCCCCCCCCcccCCcceEEEEEEccC-CCe
Q 038439 87 V-RTFRGHMNEKNFVGLTVNSE-YIACGSESNEVYVYHKEIS-KPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSD-SPT 162 (179)
Q Consensus 87 ~-~~~~~~~~~v~~~~~~~~~~-~~~~~~~d~~v~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~ 162 (179)
. ..++ ..+.|..++|.|... .++++..||.|+-+|+|.. +++.+.. . |...|.++++++. ..+
T Consensus 322 s~~~wk-~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~--A----------Hd~~ISgl~~n~~~p~~ 388 (463)
T KOG0270|consen 322 SGKEWK-FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLK--A----------HDDEISGLSVNIQTPGL 388 (463)
T ss_pred cCceEE-eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEE--e----------ccCCcceEEecCCCCcc
Confidence 2 2222 356789999999754 5778889999999999985 5554433 2 2778999999874 467
Q ss_pred EEEEeCCCcEEEEeec
Q 038439 163 MLTANSQGTIKVLVLA 178 (179)
Q Consensus 163 l~~~~~dg~i~iwd~~ 178 (179)
+++++.|+.+++|++.
T Consensus 389 l~t~s~d~~Vklw~~~ 404 (463)
T KOG0270|consen 389 LSTASTDKVVKLWKFD 404 (463)
T ss_pred eeeccccceEEEEeec
Confidence 8899999999999974
No 153
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=7.8e-17 Score=115.75 Aligned_cols=164 Identities=18% Similarity=0.210 Sum_probs=130.8
Q ss_pred CCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEeCCC----------cee----eecccCceeEEEEeeC-C
Q 038439 2 AYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKYQST----------APC----VHGHKKAVSYVKFLSN-D 65 (179)
Q Consensus 2 ~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~----------~~~----~~~~~~~i~~~~~~~~-~ 65 (179)
-+|+|.-||+.++++...++ ..+.|.+++.+|.+..+.+.++.+ +.. +...++.|.++.|+|+ .
T Consensus 88 ~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~ 167 (691)
T KOG2048|consen 88 LSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGT 167 (691)
T ss_pred CCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCcc
Confidence 47899999999999999887 567899999999985555554333 111 3345678999999999 7
Q ss_pred eEEEecCCCcEEEEecCCCcceeeecC--------CCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCC
Q 038439 66 ELASASTDSTLRLWDVKENLPVRTFRG--------HMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSP 137 (179)
Q Consensus 66 ~l~~~~~d~~v~iwd~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~ 137 (179)
.+++|+.||.|++||..++..+..... ..--|+++.|-.++ .|++|...|.|++||...+..++.+...
T Consensus 168 ~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h-- 244 (691)
T KOG2048|consen 168 KIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCH-- 244 (691)
T ss_pred EEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhh--
Confidence 799999999999999998876652211 22346677766554 6899999999999999999988877642
Q ss_pred CCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439 138 DMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 138 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
...|.+++..++++++++++.|+.|..|...
T Consensus 245 ----------~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~ 275 (691)
T KOG2048|consen 245 ----------DADVLALAVADNEDRVFSAGVDPKIIQYSLT 275 (691)
T ss_pred ----------hcceeEEEEcCCCCeEEEccCCCceEEEEec
Confidence 7789999999999999999999998887654
No 154
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=7.8e-19 Score=132.01 Aligned_cols=166 Identities=17% Similarity=0.322 Sum_probs=133.4
Q ss_pred CCCccEEEEEcCCceeEEee---cCCCceeEEEEcCCCCeEEEEe-----------CCCcee--eecccC--ceeEEEEe
Q 038439 1 MAYGKVKVWCTRQEASVLNI---DMKANICCVKYNPGSSNYIAKY-----------QSTAPC--VHGHKK--AVSYVKFL 62 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~--~~~~~~--~i~~~~~~ 62 (179)
++||.|.|||+++.+.-... ...+.|.+++|+..-+++++.+ +..+++ +..+.. .+..+.|+
T Consensus 136 a~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~Wh 215 (1049)
T KOG0307|consen 136 ADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWH 215 (1049)
T ss_pred CCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeC
Confidence 47999999999986654444 2467899999999888888887 233344 444433 46789999
Q ss_pred eC--CeEEEecCCC---cEEEEecCC-CcceeeecCCCCCeEEEEEeeCC-CEEEEeccCCcEEEEEcCCCccccccccC
Q 038439 63 SN--DELASASTDS---TLRLWDVKE-NLPVRTFRGHMNEKNFVGLTVNS-EYIACGSESNEVYVYHKEISKPVTWHRFS 135 (179)
Q Consensus 63 ~~--~~l~~~~~d~---~v~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~d~~v~vwd~~~~~~~~~~~~~ 135 (179)
|+ ..+++++.|. .|.+||+|. ..+++.+.+|...|.++.|++.+ +++++++.|+.|.+|+.++++.+..+...
T Consensus 216 P~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~ 295 (1049)
T KOG0307|consen 216 PDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQ 295 (1049)
T ss_pred CCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCC
Confidence 99 7788877654 689999986 45677888999999999999965 88999999999999999999988776542
Q ss_pred CCCCCCCcccCCcceEEEEEEccCCC-eEEEEeCCCcEEEEeec
Q 038439 136 SPDMDDTDEDAGSYFISAVCWKSDSP-TMLTANSQGTIKVLVLA 178 (179)
Q Consensus 136 ~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~iwd~~ 178 (179)
...+..+.|+|... .+++++-||.|.||.+.
T Consensus 296 ------------~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~ 327 (1049)
T KOG0307|consen 296 ------------GNWCFDVQWCPRNPSVMAAASFDGKISIYSLQ 327 (1049)
T ss_pred ------------CcceeeeeecCCCcchhhhheeccceeeeeee
Confidence 67899999999554 78889999999999875
No 155
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=5.8e-18 Score=112.15 Aligned_cols=124 Identities=15% Similarity=0.154 Sum_probs=100.2
Q ss_pred eeEEEEeeC-CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCcccccccc
Q 038439 56 VSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRF 134 (179)
Q Consensus 56 i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~ 134 (179)
..|+.|++. .+++.|+.||.|.|||+.+...-+.+.+|..+|.+++|+++|++|++++.|..+.+||+..+.+++.+.+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf 105 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF 105 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEc
Confidence 678999999 9999999999999999999988888999999999999999999999999999999999999988887776
Q ss_pred CCCCCCCC----------------------cc-c-C----------CcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439 135 SSPDMDDT----------------------DE-D-A----------GSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA 179 (179)
Q Consensus 135 ~~~~~~~~----------------------~~-~-~----------~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 179 (179)
..+...-. +. . | -.....+..|.+.|+++++|...|.+.++|..+
T Consensus 106 ~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t 184 (405)
T KOG1273|consen 106 DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAET 184 (405)
T ss_pred cCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecch
Confidence 65510000 00 0 0 001112234778899999999999999998653
No 156
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.77 E-value=4.1e-17 Score=108.57 Aligned_cols=168 Identities=15% Similarity=0.276 Sum_probs=132.4
Q ss_pred CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe---------CCCce---e--eecccCceeEEEEeeCC
Q 038439 1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY---------QSTAP---C--VHGHKKAVSYVKFLSND 65 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~---------~~~~~---~--~~~~~~~i~~~~~~~~~ 65 (179)
|+|++..+||+++++++..+. |..+.+.++-+|.. .+++++ +-.+. + +++|+..|+++.|.-+.
T Consensus 291 SWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQ-rLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd 369 (481)
T KOG0300|consen 291 SWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQ-RLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD 369 (481)
T ss_pred eccccceeeeeccCceeccccCcchhccccccCCcc-eEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC
Confidence 579999999999999999885 88999999999987 566655 11122 2 89999999999999888
Q ss_pred eEEEecCCCcEEEEecCC-CcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcc
Q 038439 66 ELASASTDSTLRLWDVKE-NLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDE 144 (179)
Q Consensus 66 ~l~~~~~d~~v~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 144 (179)
.+++|+.|.+|++||++. ..++.+++ ..++++.++.+..+..|+.--.++.|++||+...+. ..+.... ..
T Consensus 370 ~vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~Rl-aRlPrts------Rq 441 (481)
T KOG0300|consen 370 RVVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRL-ARLPRTS------RQ 441 (481)
T ss_pred ceeecCCCceEEEeeeccccCcceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCcc-ccCCccc------cc
Confidence 899999999999999987 45667776 467788999998888888888899999999975443 2222111 11
Q ss_pred cCCcceEEEEEEccCC--CeEEEEeCCCcEEEEeec
Q 038439 145 DAGSYFISAVCWKSDS--PTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 145 ~~~~~~i~~~~~~~~~--~~l~~~~~dg~i~iwd~~ 178 (179)
+ |...|.+++|..+. .-|++++.|..+.-|.++
T Consensus 442 g-HrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in 476 (481)
T KOG0300|consen 442 G-HRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKIN 476 (481)
T ss_pred c-cceeeeeeeccccCcccccccccccceeeeeEec
Confidence 2 27789999997533 347889999999999875
No 157
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=1e-16 Score=118.66 Aligned_cols=172 Identities=13% Similarity=0.198 Sum_probs=135.1
Q ss_pred CCCccEEEEEcCCc-eeEEeec-CCCceeEEEEcCCCCeEEEEeC----------CCc--eeeecccCceeEEEEeeC-C
Q 038439 1 MAYGKVKVWCTRQE-ASVLNID-MKANICCVKYNPGSSNYIAKYQ----------STA--PCVHGHKKAVSYVKFLSN-D 65 (179)
Q Consensus 1 ~~d~~i~vwd~~~~-~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~----------~~~--~~~~~~~~~i~~~~~~~~-~ 65 (179)
+.||.|++|+.... +.-.++. +...|.+++-... .++++.. .++ -++...+-++.+++|+.+ .
T Consensus 32 gsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~--~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~ 109 (933)
T KOG1274|consen 32 GSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSN--HFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGK 109 (933)
T ss_pred cCCCceEEeecCCcccCCchhhccCceeEEEeeccc--ceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCc
Confidence 57899999998766 4444555 7778888876554 4555441 111 114455678999999999 8
Q ss_pred eEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCccc
Q 038439 66 ELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDED 145 (179)
Q Consensus 66 ~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 145 (179)
.++.||.|-.|++-+..+......+++|..+|.++.|+|+++++|+.+-||.|++||+.++.....+..-........
T Consensus 110 ~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~-- 187 (933)
T KOG1274|consen 110 MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFIL-- 187 (933)
T ss_pred EEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccc--
Confidence 999999999999999999988999999999999999999999999999999999999999887766543322211110
Q ss_pred CCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439 146 AGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 146 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
...+..++|+|++..++..+.|+.|++|+..
T Consensus 188 --s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~ 218 (933)
T KOG1274|consen 188 --SRICTRLAWHPKGGTLAVPPVDNTVKVYSRK 218 (933)
T ss_pred --cceeeeeeecCCCCeEEeeccCCeEEEEccC
Confidence 4467889999999999999999999999854
No 158
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=2.8e-18 Score=129.11 Aligned_cols=167 Identities=11% Similarity=0.204 Sum_probs=126.8
Q ss_pred CCCccEEEEEcCCc---e---eEEee-cCCCceeEEEEcCCCCeEEEEe-CCCcee---e-----------ecccCceeE
Q 038439 1 MAYGKVKVWCTRQE---A---SVLNI-DMKANICCVKYNPGSSNYIAKY-QSTAPC---V-----------HGHKKAVSY 58 (179)
Q Consensus 1 ~~d~~i~vwd~~~~---~---~~~~~-~~~~~v~~~~~~~~~~~~~~~~-~~~~~~---~-----------~~~~~~i~~ 58 (179)
.+||.|.+||...- . .+.+. .|++.|..+.|++...++++.| +.++.+ + ......|.+
T Consensus 87 ~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~ 166 (1049)
T KOG0307|consen 87 LEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKC 166 (1049)
T ss_pred ccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceE
Confidence 37999999997652 2 22333 3899999999999998899998 333322 1 113457999
Q ss_pred EEEeeC--CeEEEecCCCcEEEEecCCCcceeeecCCCC--CeEEEEEeeCC-CEEEEeccC---CcEEEEEcCCC-ccc
Q 038439 59 VKFLSN--DELASASTDSTLRLWDVKENLPVRTFRGHMN--EKNFVGLTVNS-EYIACGSES---NEVYVYHKEIS-KPV 129 (179)
Q Consensus 59 ~~~~~~--~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~--~v~~~~~~~~~-~~~~~~~~d---~~v~vwd~~~~-~~~ 129 (179)
++|+.. ..|++++.++.+.|||++..+++..+..+.. .+..++|+|+. ..+++++.| -.|.+||+|.- .++
T Consensus 167 lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~ 246 (1049)
T KOG0307|consen 167 LSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPL 246 (1049)
T ss_pred eccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCch
Confidence 999988 7788999999999999999888887765544 46789999985 446666654 35999999863 344
Q ss_pred cccccCCCCCCCCcccCCcceEEEEEEccCC-CeEEEEeCCCcEEEEeecC
Q 038439 130 TWHRFSSPDMDDTDEDAGSYFISAVCWKSDS-PTMLTANSQGTIKVLVLAA 179 (179)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~ 179 (179)
+.++ +|...|.++.|++.+ .+|++++.|+.|.+|+.++
T Consensus 247 k~~~------------~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~t 285 (1049)
T KOG0307|consen 247 KILE------------GHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNT 285 (1049)
T ss_pred hhhc------------ccccceeeeccCCCCchhhhcccCCCCeeEecCCC
Confidence 4432 227789999999965 8899999999999999764
No 159
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.76 E-value=2.6e-17 Score=115.99 Aligned_cols=147 Identities=19% Similarity=0.278 Sum_probs=115.6
Q ss_pred CCCccEEEEEcCCceeEEee-cCCCceeEEEEcCCCCeEEEEe----------CCCcee-eecccCceeEEEEeeC-CeE
Q 038439 1 MAYGKVKVWCTRQEASVLNI-DMKANICCVKYNPGSSNYIAKY----------QSTAPC-VHGHKKAVSYVKFLSN-DEL 67 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~----------~~~~~~-~~~~~~~i~~~~~~~~-~~l 67 (179)
|+||.|++|+-. |-...++ +...+|.|++|.|+...++.+. ...+++ .++|.+-|.++.|++. +.+
T Consensus 123 GEDG~iKiWSrs-GMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI 201 (737)
T KOG1524|consen 123 GEDGVIKIWSRS-GMLRSTVVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNII 201 (737)
T ss_pred cCCceEEEEecc-chHHHHHhhcCceeEEEEECCCCCceEEecCCeEEEeecccccceeEEeccCcEEEEeecCccccce
Confidence 689999999944 4333333 4678899999999988777765 334455 8899999999999999 999
Q ss_pred EEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCC
Q 038439 68 ASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAG 147 (179)
Q Consensus 68 ~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (179)
++|+.|-..++||-. |..+.+-..|..+|++++|+|+ +.++.++. ++++ +..+.
T Consensus 202 ~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~-nt~R--------------~~~p~--------- 255 (737)
T KOG1524|consen 202 ASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE-KDYLLWSY-NTAR--------------FSSPR--------- 255 (737)
T ss_pred eecCCceeEEeeccc-CcccccCChhccceeeeeeccc-cceeeeee-eeee--------------ecCCC---------
Confidence 999999999999976 5667777788999999999999 66666554 2333 11111
Q ss_pred cceEEEEEEccCCCeEEEEeCCCcEEE
Q 038439 148 SYFISAVCWKSDSPTMLTANSQGTIKV 174 (179)
Q Consensus 148 ~~~i~~~~~~~~~~~l~~~~~dg~i~i 174 (179)
.+.|..++|++||..+++|+..|.+.+
T Consensus 256 ~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 256 VGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred ccceEEEEEcCCCceeeccccCceEEE
Confidence 567999999999999999999987654
No 160
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.76 E-value=2.3e-17 Score=108.14 Aligned_cols=144 Identities=16% Similarity=0.294 Sum_probs=108.7
Q ss_pred CCCceeEEEEcCCCCeEEEEeC----------CCc---ee----eecccCceeEEEEeeC--CeEEEecCCCcEEEEecC
Q 038439 22 MKANICCVKYNPGSSNYIAKYQ----------STA---PC----VHGHKKAVSYVKFLSN--DELASASTDSTLRLWDVK 82 (179)
Q Consensus 22 ~~~~v~~~~~~~~~~~~~~~~~----------~~~---~~----~~~~~~~i~~~~~~~~--~~l~~~~~d~~v~iwd~~ 82 (179)
+-+.|.|+.|.|++.++++..+ ..+ .+ -.++....++-+|+|. ...+....|++++.||++
T Consensus 122 avg~i~cvew~Pns~klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~R 201 (370)
T KOG1007|consen 122 AVGKINCVEWEPNSDKLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLR 201 (370)
T ss_pred HhCceeeEEEcCCCCeeEEeccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEEcc
Confidence 3458999999999988887761 111 11 2235667788899995 444444568999999999
Q ss_pred CCcceeeec-CCCCCeEEEEEeeCCC-EEEEeccCCcEEEEEcCCCc-cccccccCCCCCCCCcccCCcceEEEEEEccC
Q 038439 83 ENLPVRTFR-GHMNEKNFVGLTVNSE-YIACGSESNEVYVYHKEISK-PVTWHRFSSPDMDDTDEDAGSYFISAVCWKSD 159 (179)
Q Consensus 83 ~~~~~~~~~-~~~~~v~~~~~~~~~~-~~~~~~~d~~v~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 159 (179)
+.++...+. .|...++.+.|+|+-+ +|++|+.||.|++||.|..+ +++.+ .. |...++++.|+|.
T Consensus 202 T~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el--~~----------HsHWvW~VRfn~~ 269 (370)
T KOG1007|consen 202 TMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQEL--PG----------HSHWVWAVRFNPE 269 (370)
T ss_pred chhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcccccc--CC----------CceEEEEEEecCc
Confidence 876666554 5788899999999865 47899999999999999744 44433 22 2889999999994
Q ss_pred -CCeEEEEeCCCcEEEEee
Q 038439 160 -SPTMLTANSQGTIKVLVL 177 (179)
Q Consensus 160 -~~~l~~~~~dg~i~iwd~ 177 (179)
.+++++|+.|..|.+|..
T Consensus 270 hdqLiLs~~SDs~V~Lsca 288 (370)
T KOG1007|consen 270 HDQLILSGGSDSAVNLSCA 288 (370)
T ss_pred cceEEEecCCCceeEEEec
Confidence 567889999999999864
No 161
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=4.3e-16 Score=100.14 Aligned_cols=171 Identities=13% Similarity=0.142 Sum_probs=123.2
Q ss_pred CCccEEEEEcCCc----------eeEEee-cCCCceeEEEEcCCCCeEEEEeC---------------CCcee----eec
Q 038439 2 AYGKVKVWCTRQE----------ASVLNI-DMKANICCVKYNPGSSNYIAKYQ---------------STAPC----VHG 51 (179)
Q Consensus 2 ~d~~i~vwd~~~~----------~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~---------------~~~~~----~~~ 51 (179)
.+|.|.+..+++. ..+... .|.++|+.++|+.+ .++++|. .-+++ ...
T Consensus 30 ~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~--~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~ 107 (325)
T KOG0649|consen 30 LFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDD--FLLSGGDGLVYGWEWNEEEESLATKRLWEVKIPM 107 (325)
T ss_pred CCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehh--heeeccCceEEEeeehhhhhhccchhhhhhcCcc
Confidence 5788888887641 123332 38899999999954 5777760 11111 222
Q ss_pred cc-----CceeEEEEeeC-CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCC
Q 038439 52 HK-----KAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEI 125 (179)
Q Consensus 52 ~~-----~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~ 125 (179)
|. ..|+++...|. +-+++++.|+.+.-||+++++..+.+++|+.-+.++.-......+++|++||++++||.++
T Consensus 108 ~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt 187 (325)
T KOG0649|consen 108 QVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKT 187 (325)
T ss_pred ccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccc
Confidence 22 35888988988 7788888999999999999999999999999999998855566789999999999999999
Q ss_pred CccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439 126 SKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA 179 (179)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 179 (179)
.+.++.+....+. .....+.+..|-+++- +..+|++|+ ...+.+|.+++
T Consensus 188 ~k~v~~ie~yk~~--~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwhLrs 236 (325)
T KOG0649|consen 188 QKHVSMIEPYKNP--NLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRS 236 (325)
T ss_pred cceeEEeccccCh--hhcCcccCceeEEEec--cCceEEecC-CCceeEEeccC
Confidence 9998876654332 2222333555655554 566777665 45789998864
No 162
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.75 E-value=9.3e-16 Score=103.47 Aligned_cols=122 Identities=18% Similarity=0.306 Sum_probs=98.6
Q ss_pred ccEEEEEcCCceeEEeec----CCCceeEEEEcCCCCeEEEEe------------CCCcee--eecccCceeEEEEeeC-
Q 038439 4 GKVKVWCTRQEASVLNID----MKANICCVKYNPGSSNYIAKY------------QSTAPC--VHGHKKAVSYVKFLSN- 64 (179)
Q Consensus 4 ~~i~vwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~------------~~~~~~--~~~~~~~i~~~~~~~~- 64 (179)
..|+|||+++.+.+.++. +...+.++.+++.+.++..-+ .+-+++ +..|++++.+++|+++
T Consensus 106 e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G 185 (391)
T KOG2110|consen 106 ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDG 185 (391)
T ss_pred ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCC
Confidence 469999999999999886 334466666666553333333 233444 8899999999999999
Q ss_pred CeEEEecCCCc-EEEEecCCCcceeeecCCC--CCeEEEEEeeCCCEEEEeccCCcEEEEEcCC
Q 038439 65 DELASASTDST-LRLWDVKENLPVRTFRGHM--NEKNFVGLTVNSEYIACGSESNEVYVYHKEI 125 (179)
Q Consensus 65 ~~l~~~~~d~~-v~iwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~ 125 (179)
.+|+|+|..|+ |||+.+.+++.+.+|+... ..|.+++|+|++++|.+.+..++|++|.+..
T Consensus 186 ~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 186 TLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred CEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 99999999986 7999999999999997543 3578999999999999999999999999875
No 163
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.75 E-value=9.5e-17 Score=106.84 Aligned_cols=148 Identities=14% Similarity=0.152 Sum_probs=119.9
Q ss_pred CCCceeEEEEcC----CCCeEEEEe-----------CCC--cee----eecccCceeEEEEeeC-----CeEEEecCCCc
Q 038439 22 MKANICCVKYNP----GSSNYIAKY-----------QST--APC----VHGHKKAVSYVKFLSN-----DELASASTDST 75 (179)
Q Consensus 22 ~~~~v~~~~~~~----~~~~~~~~~-----------~~~--~~~----~~~~~~~i~~~~~~~~-----~~l~~~~~d~~ 75 (179)
|+.+|..++|++ +....+++. ..+ +.+ -..|......++|+-+ .+++.++.-|.
T Consensus 37 ~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~Gv 116 (385)
T KOG1034|consen 37 HNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGV 116 (385)
T ss_pred CCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeE
Confidence 678899999985 333444443 111 111 2236677778888876 47888899999
Q ss_pred EEEEecCCCcceeeecCCCCCeEEEEEeeC-CCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEE
Q 038439 76 LRLWDVKENLPVRTFRGHMNEKNFVGLTVN-SEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAV 154 (179)
Q Consensus 76 v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 154 (179)
|+|.|+.++++...+.+|...|+.+.+.|+ .+++++++.|..|++|++++..++..+-- . +.|...|.++
T Consensus 117 IrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG--~-------egHrdeVLSv 187 (385)
T KOG1034|consen 117 IRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGG--V-------EGHRDEVLSV 187 (385)
T ss_pred EEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecc--c-------ccccCcEEEE
Confidence 999999999999999999999999999996 57899999999999999999988876532 1 2237889999
Q ss_pred EEccCCCeEEEEeCCCcEEEEeec
Q 038439 155 CWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 155 ~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
.|+++|.++++++.|..|++|+++
T Consensus 188 D~~~~gd~i~ScGmDhslk~W~l~ 211 (385)
T KOG1034|consen 188 DFSLDGDRIASCGMDHSLKLWRLN 211 (385)
T ss_pred EEcCCCCeeeccCCcceEEEEecC
Confidence 999999999999999999999986
No 164
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.75 E-value=1.5e-16 Score=113.80 Aligned_cols=171 Identities=18% Similarity=0.277 Sum_probs=117.4
Q ss_pred CCCccEEEEEcCCceeEEe---ecCCCceeEEEEcCCCCeEEEEe-----------------------------CCC---
Q 038439 1 MAYGKVKVWCTRQEASVLN---IDMKANICCVKYNPGSSNYIAKY-----------------------------QST--- 45 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~-----------------------------~~~--- 45 (179)
+-|.++++||+++.++... +.|.+.|.+++|.|..+.++++| ..+
T Consensus 119 sGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~pt 198 (720)
T KOG0321|consen 119 SGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPT 198 (720)
T ss_pred cCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCC
Confidence 3588999999999887654 56999999999999998999988 011
Q ss_pred --cee------eecccCceeE---EEEeeC-CeEEEecC-CCcEEEEecCCCccee------e--ecCC---CCCeEEEE
Q 038439 46 --APC------VHGHKKAVSY---VKFLSN-DELASAST-DSTLRLWDVKENLPVR------T--FRGH---MNEKNFVG 101 (179)
Q Consensus 46 --~~~------~~~~~~~i~~---~~~~~~-~~l~~~~~-d~~v~iwd~~~~~~~~------~--~~~~---~~~v~~~~ 101 (179)
+++ -.++...|.+ +.+..| ..|++++. |+.|+|||++...... . +.-+ .-.+.++.
T Consensus 199 pskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~ 278 (720)
T KOG0321|consen 199 PSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLI 278 (720)
T ss_pred CCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEE
Confidence 111 2233334444 444556 88999888 9999999998743221 1 1112 22455566
Q ss_pred EeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439 102 LTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA 179 (179)
Q Consensus 102 ~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 179 (179)
....|.++++.+.|+.|++|++.+...-....+..... ...-..-..+|++.++++|+.|+..++|.+.+
T Consensus 279 lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~--------~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~ 348 (720)
T KOG0321|consen 279 LDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLN--------SSFYVKSELSPDDCSLLSGSSDEQAYIWVVSS 348 (720)
T ss_pred ecCCCCeEEEEecCCcEEEEeccccCcCchhhccCccc--------ceeeeeeecCCCCceEeccCCCcceeeeeecC
Confidence 66668998888889999999998765433333322210 22222334689999999999999999998753
No 165
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.74 E-value=4.8e-17 Score=113.87 Aligned_cols=162 Identities=10% Similarity=0.128 Sum_probs=137.5
Q ss_pred CCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe----------CCCcee-eecccCceeEEEEeeC-CeEE
Q 038439 2 AYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY----------QSTAPC-VHGHKKAVSYVKFLSN-DELA 68 (179)
Q Consensus 2 ~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~----------~~~~~~-~~~~~~~i~~~~~~~~-~~l~ 68 (179)
.||.|.|||+.+...+..++ |.+.+.|+..+++|.++-..| +.++.+ .......|.++.++|+ ..++
T Consensus 529 sdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWla 608 (705)
T KOG0639|consen 529 SDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLA 608 (705)
T ss_pred cCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCcccee
Confidence 58999999999999999997 899999999999998888877 222332 3344678999999999 9999
Q ss_pred EecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCc
Q 038439 69 SASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGS 148 (179)
Q Consensus 69 ~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (179)
.|-.++.+.+...... ....+..|.+.|-++.|.+.|+++++.+.|+.+..|...-|..+...+- .
T Consensus 609 vGMens~vevlh~skp-~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE-------------~ 674 (705)
T KOG0639|consen 609 VGMENSNVEVLHTSKP-EKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE-------------S 674 (705)
T ss_pred eecccCcEEEEecCCc-cceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccc-------------c
Confidence 9999999988876643 3456667899999999999999999999999999999988877655442 6
Q ss_pred ceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439 149 YFISAVCWKSDSPTMLTANSQGTIKVLVL 177 (179)
Q Consensus 149 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 177 (179)
..|.++..+.|.+++++|+.|..-.||.+
T Consensus 675 SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 675 SSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred CcceeeeeccCceEEEecCCCcceEEEEE
Confidence 68999999999999999999999999876
No 166
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.74 E-value=4.3e-17 Score=117.45 Aligned_cols=148 Identities=19% Similarity=0.240 Sum_probs=116.0
Q ss_pred eecCCCceeEEEEcCCCCeEEEEe--------------C--CCcee--eecccCceeEEEEeeC-CeEEEecCCCcEEEE
Q 038439 19 NIDMKANICCVKYNPGSSNYIAKY--------------Q--STAPC--VHGHKKAVSYVKFLSN-DELASASTDSTLRLW 79 (179)
Q Consensus 19 ~~~~~~~v~~~~~~~~~~~~~~~~--------------~--~~~~~--~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iw 79 (179)
-+.|...|++++.+|++ +++|++ + +-..+ +.+|.-.|+.++|+|+ .+|++.|.|+++.+|
T Consensus 521 LYGHGyEv~~l~~s~~g-nliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~ 599 (764)
T KOG1063|consen 521 LYGHGYEVYALAISPTG-NLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLY 599 (764)
T ss_pred hccCceeEEEEEecCCC-CEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEee
Confidence 34688999999999999 566665 1 11112 7889999999999999 999999999999999
Q ss_pred ecCCCcc----eeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCC--ccccccccCCCCCCCCcccCCcceEEE
Q 038439 80 DVKENLP----VRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEIS--KPVTWHRFSSPDMDDTDEDAGSYFISA 153 (179)
Q Consensus 80 d~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~ 153 (179)
....... ....+.|...|+..+|+|++.+|++++.|.+|++|..... +.+..+..... +..|+.
T Consensus 600 ~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~----------~~aVTA 669 (764)
T KOG1063|consen 600 EVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKF----------SLAVTA 669 (764)
T ss_pred eeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhcc----------CCceee
Confidence 9764321 2236778999999999999999999999999999998877 33333211111 678999
Q ss_pred EEEcc-----CCCeEEEEeCCCcEEEEee
Q 038439 154 VCWKS-----DSPTMLTANSQGTIKVLVL 177 (179)
Q Consensus 154 ~~~~~-----~~~~l~~~~~dg~i~iwd~ 177 (179)
+++.| .+..+++|-..|.|.+|..
T Consensus 670 v~~~~~~~~e~~~~vavGle~GeI~l~~~ 698 (764)
T KOG1063|consen 670 VAYLPVDHNEKGDVVAVGLEKGEIVLWRR 698 (764)
T ss_pred EEeeccccccccceEEEEecccEEEEEec
Confidence 99876 2337888999999999974
No 167
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=1.1e-16 Score=113.01 Aligned_cols=166 Identities=19% Similarity=0.330 Sum_probs=130.6
Q ss_pred CCCccEEEEEcCC--------ceeEEeec-CCCceeEEEEcCCCCeEEEEeCC-----------------Cce--e---e
Q 038439 1 MAYGKVKVWCTRQ--------EASVLNID-MKANICCVKYNPGSSNYIAKYQS-----------------TAP--C---V 49 (179)
Q Consensus 1 ~~d~~i~vwd~~~--------~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~-----------------~~~--~---~ 49 (179)
+.||+|++|++++ -+++.++. |.++|.|+++.+.+..++..|.. ..+ + +
T Consensus 313 sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l 392 (577)
T KOG0642|consen 313 SEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTL 392 (577)
T ss_pred ccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccce
Confidence 4689999999943 24566665 99999999999999888887711 111 2 8
Q ss_pred ecccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCcc------------------------------------------
Q 038439 50 HGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLP------------------------------------------ 86 (179)
Q Consensus 50 ~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~------------------------------------------ 86 (179)
.||+..++.+++++. ..|++++.||+++.|+.....+
T Consensus 393 ~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~ 472 (577)
T KOG0642|consen 393 LGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVV 472 (577)
T ss_pred eccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhh
Confidence 899999999999999 8899999999999998754321
Q ss_pred --eeeecC-------CCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEc
Q 038439 87 --VRTFRG-------HMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWK 157 (179)
Q Consensus 87 --~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 157 (179)
+..+.. ....+..+.++|.+.+.+++..|+.|+++|..+++++..... |...++++++.
T Consensus 473 s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a------------~~~svtslai~ 540 (577)
T KOG0642|consen 473 SDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVA------------HKDSVTSLAID 540 (577)
T ss_pred hheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheee------------ccceecceeec
Confidence 000100 012345577888888999999999999999999998876543 16789999999
Q ss_pred cCCCeEEEEeCCCcEEEEeec
Q 038439 158 SDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 158 ~~~~~l~~~~~dg~i~iwd~~ 178 (179)
|+|.+|++++.|+.+++|.+.
T Consensus 541 ~ng~~l~s~s~d~sv~l~kld 561 (577)
T KOG0642|consen 541 PNGPYLMSGSHDGSVRLWKLD 561 (577)
T ss_pred CCCceEEeecCCceeehhhcc
Confidence 999999999999999999863
No 168
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.74 E-value=1.1e-16 Score=106.25 Aligned_cols=147 Identities=14% Similarity=0.231 Sum_probs=114.7
Q ss_pred CCCceeEEEEcCCCCeEEEEeCC-------------Ccee--eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCC-C
Q 038439 22 MKANICCVKYNPGSSNYIAKYQS-------------TAPC--VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKE-N 84 (179)
Q Consensus 22 ~~~~v~~~~~~~~~~~~~~~~~~-------------~~~~--~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~-~ 84 (179)
...+|+|.+|++++..+.++.++ -++. +..|...|+.+.|+|. +.|++++.|....+|...+ +
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence 46789999999999544444311 1222 7789999999999999 9999999999999999843 3
Q ss_pred --cceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCe
Q 038439 85 --LPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPT 162 (179)
Q Consensus 85 --~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 162 (179)
++...+..+....+++.|+|.++.|++|+....|.||-++....--.-+.-. ......|.++.|+|++-+
T Consensus 89 ~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhik--------kPirStv~sldWhpnnVL 160 (361)
T KOG1523|consen 89 TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIK--------KPIRSTVTSLDWHPNNVL 160 (361)
T ss_pred eeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhC--------CccccceeeeeccCCcce
Confidence 3444555678889999999999999999999999999887654321111100 011667999999999999
Q ss_pred EEEEeCCCcEEEEe
Q 038439 163 MLTANSQGTIKVLV 176 (179)
Q Consensus 163 l~~~~~dg~i~iwd 176 (179)
|++|+.|+.++||.
T Consensus 161 laaGs~D~k~rVfS 174 (361)
T KOG1523|consen 161 LAAGSTDGKCRVFS 174 (361)
T ss_pred ecccccCcceeEEE
Confidence 99999999999985
No 169
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.73 E-value=1.9e-15 Score=105.89 Aligned_cols=173 Identities=15% Similarity=0.254 Sum_probs=127.2
Q ss_pred CCCccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe-----------CCCcee-eecccCceeEEEEeeC-CeE
Q 038439 1 MAYGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY-----------QSTAPC-VHGHKKAVSYVKFLSN-DEL 67 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~-~~~~~~~i~~~~~~~~-~~l 67 (179)
|.|+.++||+ ..+++.+.....++.|+.|+|.| .+++| .+...+ +...+.++++++|+|+ .+|
T Consensus 387 gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~l 462 (626)
T KOG2106|consen 387 GQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSG--VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFL 462 (626)
T ss_pred cCcceEEEcc--CCceeEEEEecCceeEeeccCcc--eEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEE
Confidence 5799999999 66677777788999999999998 55555 222233 3334789999999999 999
Q ss_pred EEecCCCcEEEEecCCC-cceeee-cCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccc------------
Q 038439 68 ASASTDSTLRLWDVKEN-LPVRTF-RGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHR------------ 133 (179)
Q Consensus 68 ~~~~~d~~v~iwd~~~~-~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~------------ 133 (179)
+.|+.|+.|.+|-+... .....+ +.+.++|+.+.|++|++++.+-+.|-.|..|.....+.....+
T Consensus 463 Avgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lG 542 (626)
T KOG2106|consen 463 AVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLG 542 (626)
T ss_pred EEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEE
Confidence 99999999999998753 333333 2344889999999999999999999999999544322221110
Q ss_pred ---------------------------------------cCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEE
Q 038439 134 ---------------------------------------FSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKV 174 (179)
Q Consensus 134 ---------------------------------------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 174 (179)
...+.........|+..|.+++|..+...+++.+.|..|..
T Consensus 543 F~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~q 622 (626)
T KOG2106|consen 543 FEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQ 622 (626)
T ss_pred EEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEE
Confidence 00001222233345788999999988888888779999999
Q ss_pred Eee
Q 038439 175 LVL 177 (179)
Q Consensus 175 wd~ 177 (179)
|++
T Consensus 623 W~l 625 (626)
T KOG2106|consen 623 WRL 625 (626)
T ss_pred EEe
Confidence 987
No 170
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.73 E-value=1.3e-16 Score=106.15 Aligned_cols=156 Identities=21% Similarity=0.312 Sum_probs=115.7
Q ss_pred CCCccEEEEEc-CCceeE---Eeec-----CCCceeEEEEcCCCCeEEEEe-----------CCCcee--eecccCceeE
Q 038439 1 MAYGKVKVWCT-RQEASV---LNID-----MKANICCVKYNPGSSNYIAKY-----------QSTAPC--VHGHKKAVSY 58 (179)
Q Consensus 1 ~~d~~i~vwd~-~~~~~~---~~~~-----~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~--~~~~~~~i~~ 58 (179)
|..++|+++|+ +.+..- .++. ..+-|.+++|+|.....+++| ...+++ +.+|.+.|+.
T Consensus 176 GykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvTh 255 (406)
T KOG2919|consen 176 GYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTH 255 (406)
T ss_pred cccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeee
Confidence 45789999998 444311 1122 356689999999988888888 445566 7899999999
Q ss_pred EEEeeC-CeEEEecC-CCcEEEEecCC-CcceeeecCCCC-CeEE--EEEeeCCCEEEEeccCCcEEEEEcCC-Cccccc
Q 038439 59 VKFLSN-DELASAST-DSTLRLWDVKE-NLPVRTFRGHMN-EKNF--VGLTVNSEYIACGSESNEVYVYHKEI-SKPVTW 131 (179)
Q Consensus 59 ~~~~~~-~~l~~~~~-d~~v~iwd~~~-~~~~~~~~~~~~-~v~~--~~~~~~~~~~~~~~~d~~v~vwd~~~-~~~~~~ 131 (179)
+.|.++ +.|++|+. |..|-.||++. +.++..+..|.. .-.. ....|++++|++|+.||.|++||++. +.++..
T Consensus 256 L~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv 335 (406)
T KOG2919|consen 256 LQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSV 335 (406)
T ss_pred EEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccc
Confidence 999999 88888876 77899999986 455556655544 2233 44567899999999999999999998 554544
Q ss_pred cccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeC
Q 038439 132 HRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANS 168 (179)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 168 (179)
+... +..++.++++|--.++++++.
T Consensus 336 ~~~~------------sd~vNgvslnP~mpilatssG 360 (406)
T KOG2919|consen 336 TGNY------------SDTVNGVSLNPIMPILATSSG 360 (406)
T ss_pred cccc------------cccccceecCcccceeeeccC
Confidence 3321 667888999998776766654
No 171
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.73 E-value=3.9e-16 Score=102.52 Aligned_cols=175 Identities=14% Similarity=0.152 Sum_probs=123.3
Q ss_pred ccEEEEEc--CCceeEE--eecCCCceeEEEEcCCCC----eEEEEe-------CC---Ccee----------eecccCc
Q 038439 4 GKVKVWCT--RQEASVL--NIDMKANICCVKYNPGSS----NYIAKY-------QS---TAPC----------VHGHKKA 55 (179)
Q Consensus 4 ~~i~vwd~--~~~~~~~--~~~~~~~v~~~~~~~~~~----~~~~~~-------~~---~~~~----------~~~~~~~ 55 (179)
+.|.|..+ .+++.+. .++|..+++.+.|.|+.. .++|+. +. ...+ -..+.++
T Consensus 73 Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aP 152 (364)
T KOG0290|consen 73 NKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAP 152 (364)
T ss_pred CeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcccCeEEEEeccCcCCceehhhhhccCcccccCCc
Confidence 44555443 3344333 357889999999999862 355554 11 1111 2345678
Q ss_pred eeEEEEeeC--CeEEEecCCCcEEEEecCCCc---ceeeecCCCCCeEEEEEeeCC-CEEEEeccCCcEEEEEcCCCccc
Q 038439 56 VSYVKFLSN--DELASASTDSTLRLWDVKENL---PVRTFRGHMNEKNFVGLTVNS-EYIACGSESNEVYVYHKEISKPV 129 (179)
Q Consensus 56 i~~~~~~~~--~~l~~~~~d~~v~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~d~~v~vwd~~~~~~~ 129 (179)
++++.|+.- +++.++|-|-+..|||++++. ...++-.|..+|..++|...+ +.|++.+.||.|++||+|..+..
T Consensus 153 lTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHS 232 (364)
T KOG0290|consen 153 LTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHS 232 (364)
T ss_pred ccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccc
Confidence 999999876 899999999999999999863 356677899999999999865 45899999999999999865422
Q ss_pred ccc-ccCC------------C-----------------------CCCCCcccCCcceEEEEEEcc-CCCeEEEEeCCCcE
Q 038439 130 TWH-RFSS------------P-----------------------DMDDTDEDAGSYFISAVCWKS-DSPTMLTANSQGTI 172 (179)
Q Consensus 130 ~~~-~~~~------------~-----------------------~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i 172 (179)
..+ +... . .........|...|+.++|.| ....|++++.|...
T Consensus 233 TIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qa 312 (364)
T KOG0290|consen 233 TIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQA 312 (364)
T ss_pred eEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceE
Confidence 111 1100 0 111112223488999999999 55789999999999
Q ss_pred EEEeec
Q 038439 173 KVLVLA 178 (179)
Q Consensus 173 ~iwd~~ 178 (179)
.+||+.
T Consensus 313 liWDl~ 318 (364)
T KOG0290|consen 313 LIWDLQ 318 (364)
T ss_pred EEEecc
Confidence 999986
No 172
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=2e-16 Score=107.97 Aligned_cols=166 Identities=16% Similarity=0.243 Sum_probs=119.4
Q ss_pred CCCccEEEEEcCCceeEEee-cCCCceeEEEEcCCCCeEEEEeCC---------Ccee--e--ecccCceeEEEEeeCC-
Q 038439 1 MAYGKVKVWCTRQEASVLNI-DMKANICCVKYNPGSSNYIAKYQS---------TAPC--V--HGHKKAVSYVKFLSND- 65 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~---------~~~~--~--~~~~~~i~~~~~~~~~- 65 (179)
+.||++|||+.++.+.+... .|...|.++.|+|||..++..+.. +.++ . .+....+..++|+.++
T Consensus 163 g~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~ 242 (398)
T KOG0771|consen 163 GTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGADSARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNA 242 (398)
T ss_pred cccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCCceEEEEeccCchhhhcCCcccchhhhhceecccCC
Confidence 57999999998877665544 599999999999999777777722 2222 1 1223345667777663
Q ss_pred ----eEEEe-cCCCcEEEEecCCCc-----ceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccC
Q 038439 66 ----ELASA-STDSTLRLWDVKENL-----PVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFS 135 (179)
Q Consensus 66 ----~l~~~-~~d~~v~iwd~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~ 135 (179)
++++. ..-+.|+.||+.... ...+.......|.+++.+++|++++.|+.||.|-+++..+.+.++..+
T Consensus 243 ~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk-- 320 (398)
T KOG0771|consen 243 QETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVK-- 320 (398)
T ss_pred CceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeeh--
Confidence 33332 334567777664321 112222234568999999999999999999999999999887766544
Q ss_pred CCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439 136 SPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVL 177 (179)
Q Consensus 136 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 177 (179)
..|...|+.+.|+|+.+++++.+.|....|..+
T Consensus 321 ---------~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l 353 (398)
T KOG0771|consen 321 ---------EAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKL 353 (398)
T ss_pred ---------hhheeeeeeEEEcCCcCcccccccCCceeEEEE
Confidence 223779999999999999999999988887655
No 173
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.72 E-value=2.5e-17 Score=113.99 Aligned_cols=156 Identities=10% Similarity=0.113 Sum_probs=121.2
Q ss_pred ccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe-----------CCCcee--eecccCceeEEEEeeC-CeEEE
Q 038439 4 GKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY-----------QSTAPC--VHGHKKAVSYVKFLSN-DELAS 69 (179)
Q Consensus 4 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~--~~~~~~~i~~~~~~~~-~~l~~ 69 (179)
+.++||| ..|..++++....+|..+.|-|.. .|++++ ..++.+ +....+.+..++-+|- ..+-+
T Consensus 191 ~y~yvYD-~~GtElHClk~~~~v~rLeFLPyH-fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~ 268 (545)
T KOG1272|consen 191 KYVYVYD-NNGTELHCLKRHIRVARLEFLPYH-FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHL 268 (545)
T ss_pred ceEEEec-CCCcEEeehhhcCchhhhcccchh-heeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEE
Confidence 4567777 446666777777788888888887 555555 344444 5555667778888888 78889
Q ss_pred ecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcc
Q 038439 70 ASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSY 149 (179)
Q Consensus 70 ~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (179)
|...|+|.+|.....+++-.+-+|.++|.++++.++|+|+++.+.|+.++|||+++...+.++.. ..
T Consensus 269 GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-------------p~ 335 (545)
T KOG1272|consen 269 GHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-------------PH 335 (545)
T ss_pred cCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-------------CC
Confidence 99999999999999999999999999999999999999999999999999999999876665543 34
Q ss_pred eEEEEEEccCCCeEEEEeCCCcEEEEe
Q 038439 150 FISAVCWKSDSPTMLTANSQGTIKVLV 176 (179)
Q Consensus 150 ~i~~~~~~~~~~~l~~~~~dg~i~iwd 176 (179)
....+++|..| +++.+....+.||.
T Consensus 336 ~a~~ls~Sqkg--lLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 336 PASNLSLSQKG--LLALSYGDHVQIWK 360 (545)
T ss_pred Ccccccccccc--ceeeecCCeeeeeh
Confidence 56778887655 44455555788883
No 174
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.72 E-value=3.8e-17 Score=109.96 Aligned_cols=128 Identities=20% Similarity=0.316 Sum_probs=105.3
Q ss_pred CCCccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe------------CCCcee--eecccCceeEEEEeeC-C
Q 038439 1 MAYGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY------------QSTAPC--VHGHKKAVSYVKFLSN-D 65 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------------~~~~~~--~~~~~~~i~~~~~~~~-~ 65 (179)
+.|+.|.|||.+++.+++.+-.+-.-+.++|+|.+ ..++++ ...+++ ..+|...|.++.|+|. .
T Consensus 207 ~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPea-fnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~ 285 (433)
T KOG0268|consen 207 ASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEA-FNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQ 285 (433)
T ss_pred ccCCceEEEecccCCccceeeeeccccceecCccc-cceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcc
Confidence 47999999999999999988888888999999966 555555 233444 7889999999999999 9
Q ss_pred eEEEecCCCcEEEEecCCCcceeeecC-CCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccc
Q 038439 66 ELASASTDSTLRLWDVKENLPVRTFRG-HMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPV 129 (179)
Q Consensus 66 ~l~~~~~d~~v~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~ 129 (179)
.|++||.|.+||||..+.+..-..+.. ..+.|.++.|+.|.+|+++|+.|+.|++|.....+.+
T Consensus 286 EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asekl 350 (433)
T KOG0268|consen 286 EFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKL 350 (433)
T ss_pred hhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhc
Confidence 999999999999999987654333321 2356899999999999999999999999987765443
No 175
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.71 E-value=1.6e-17 Score=114.99 Aligned_cols=165 Identities=15% Similarity=0.149 Sum_probs=140.6
Q ss_pred CCCccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe---------CCCcee--eecccCceeEEEEeeC-CeEE
Q 038439 1 MAYGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY---------QSTAPC--VHGHKKAVSYVKFLSN-DELA 68 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~---------~~~~~~--~~~~~~~i~~~~~~~~-~~l~ 68 (179)
|..|.|-.+|..++++...+.....|.++.|-.+. +++|++ +.+..+ ++.| ..|..+.|.|- -+|+
T Consensus 148 GrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHne-q~~AVAQK~y~yvYD~~GtElHClk~~-~~v~rLeFLPyHfLL~ 225 (545)
T KOG1272|consen 148 GRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNE-QFFAVAQKKYVYVYDNNGTELHCLKRH-IRVARLEFLPYHFLLV 225 (545)
T ss_pred CCccceeeeecccceeeeeeehhhhhhhhhhhcch-HHHHhhhhceEEEecCCCcEEeehhhc-Cchhhhcccchhheee
Confidence 35678889999999999999999999999998776 566665 444444 3333 45788899999 7788
Q ss_pred EecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCc
Q 038439 69 SASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGS 148 (179)
Q Consensus 69 ~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (179)
+++..|.++--|+..|+.+..+....+.+..+.-+|-+..+-+|...|+|.+|...+.+++..+.. |.
T Consensus 226 ~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLc------------H~ 293 (545)
T KOG1272|consen 226 AASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILC------------HR 293 (545)
T ss_pred ecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHh------------cC
Confidence 999999999999999999999988888888999999988999999999999999999888755432 28
Q ss_pred ceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439 149 YFISAVCWKSDSPTMLTANSQGTIKVLVLAA 179 (179)
Q Consensus 149 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 179 (179)
++|.++++.++|+++++.+.|..++|||+++
T Consensus 294 g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~ 324 (545)
T KOG1272|consen 294 GPVSSIAVDRGGRYMATTGLDRKVKIWDLRN 324 (545)
T ss_pred CCcceEEECCCCcEEeecccccceeEeeecc
Confidence 8999999999999999999999999999974
No 176
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.70 E-value=3.1e-15 Score=98.37 Aligned_cols=158 Identities=16% Similarity=0.260 Sum_probs=116.5
Q ss_pred CccEEEEEcCC--ceeE--Ee------ecCCCceeEEEEcCCCCeEEEEe-----------CCCce--e---eecccCce
Q 038439 3 YGKVKVWCTRQ--EASV--LN------IDMKANICCVKYNPGSSNYIAKY-----------QSTAP--C---VHGHKKAV 56 (179)
Q Consensus 3 d~~i~vwd~~~--~~~~--~~------~~~~~~v~~~~~~~~~~~~~~~~-----------~~~~~--~---~~~~~~~i 56 (179)
+-.++||.+.. .+.. .. -++..++++..|+.-.++++.++ ..+.. + +-+|.+.|
T Consensus 120 ~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV 199 (364)
T KOG0290|consen 120 SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEV 199 (364)
T ss_pred cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcce
Confidence 45789998873 2211 11 13567899999998887887776 22211 2 77899999
Q ss_pred eEEEEeeC--CeEEEecCCCcEEEEecCCC------------------------------------------------cc
Q 038439 57 SYVKFLSN--DELASASTDSTLRLWDVKEN------------------------------------------------LP 86 (179)
Q Consensus 57 ~~~~~~~~--~~l~~~~~d~~v~iwd~~~~------------------------------------------------~~ 86 (179)
..++|... +.|++.+.||.||+||++.. .+
T Consensus 200 ~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tp 279 (364)
T KOG0290|consen 200 YDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTP 279 (364)
T ss_pred eEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcc
Confidence 99999997 89999999999999999863 13
Q ss_pred eeeecCCCCCeEEEEEeeC-CCEEEEeccCCcEEEEEcCCCcc------ccccccCCCCCCCCcccCCcceEEEEEEcc-
Q 038439 87 VRTFRGHMNEKNFVGLTVN-SEYIACGSESNEVYVYHKEISKP------VTWHRFSSPDMDDTDEDAGSYFISAVCWKS- 158 (179)
Q Consensus 87 ~~~~~~~~~~v~~~~~~~~-~~~~~~~~~d~~v~vwd~~~~~~------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~- 158 (179)
+..++.|.+.|+.++|.|. ...|.+++.|.++.+||+.+... +..+.. ++.|+.+.|++
T Consensus 280 va~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a-------------~~EVNqi~Ws~~ 346 (364)
T KOG0290|consen 280 VARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTA-------------GGEVNQIQWSSS 346 (364)
T ss_pred eehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhc-------------cceeeeeeeccc
Confidence 4456779999999999997 56799999999999999986432 222221 67899999997
Q ss_pred CCCeEEEEeCCCcEEE
Q 038439 159 DSPTMLTANSQGTIKV 174 (179)
Q Consensus 159 ~~~~l~~~~~dg~i~i 174 (179)
.+.+++.+.. +++.+
T Consensus 347 ~~Dwiai~~~-kklei 361 (364)
T KOG0290|consen 347 QPDWIAICFG-KKLEI 361 (364)
T ss_pred CCCEEEEEec-CeeeE
Confidence 5567766654 34443
No 177
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=6.5e-16 Score=103.28 Aligned_cols=126 Identities=18% Similarity=0.319 Sum_probs=95.4
Q ss_pred CCCcee--eecccCceeEEEEeeC---CeEEEecCCCcEEEEecCCCcce--eeecCCC-CCeEEEEEeeCCCEEEEecc
Q 038439 43 QSTAPC--VHGHKKAVSYVKFLSN---DELASASTDSTLRLWDVKENLPV--RTFRGHM-NEKNFVGLTVNSEYIACGSE 114 (179)
Q Consensus 43 ~~~~~~--~~~~~~~i~~~~~~~~---~~l~~~~~d~~v~iwd~~~~~~~--~~~~~~~-~~v~~~~~~~~~~~~~~~~~ 114 (179)
.+++.+ ++++...++.++|..+ ..+.+++.||+|++||+|..... ..+..+. .+..+++.+-+++.+++|.+
T Consensus 58 ~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE 137 (376)
T KOG1188|consen 58 GTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTE 137 (376)
T ss_pred cchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccc
Confidence 334455 8888888999999874 77899999999999999975443 3344444 34556666667778888754
Q ss_pred ----CCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEcc-CCCeEEEEeCCCcEEEEeec
Q 038439 115 ----SNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKS-DSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 115 ----d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~ 178 (179)
+..|.+||.|+.+......... |...|++++|+| +.++|++|+.||-+.+||+.
T Consensus 138 ~~~s~A~v~lwDvR~~qq~l~~~~eS----------H~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~ 196 (376)
T KOG1188|consen 138 LTRSDASVVLWDVRSEQQLLRQLNES----------HNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTK 196 (376)
T ss_pred cccCceEEEEEEeccccchhhhhhhh----------ccCcceeEEecCCCCCeEEeecccceEEeeecC
Confidence 6789999999877632222322 377899999999 56899999999999999975
No 178
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.70 E-value=2.7e-16 Score=107.09 Aligned_cols=124 Identities=17% Similarity=0.326 Sum_probs=99.4
Q ss_pred CCCccEEEEEcCCcee------E---Eee-cCCCceeEEEEcCCCCeEEEEe-----------C--------C-----Cc
Q 038439 1 MAYGKVKVWCTRQEAS------V---LNI-DMKANICCVKYNPGSSNYIAKY-----------Q--------S-----TA 46 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~~------~---~~~-~~~~~v~~~~~~~~~~~~~~~~-----------~--------~-----~~ 46 (179)
|-|..|++|-++..+. + ..+ .|+..|+.+.|+|+| .++++| . + .+
T Consensus 33 G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~g-elLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke 111 (434)
T KOG1009|consen 33 GGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDG-ELLASGGDGGEVFLWKQGDVRIFDADTEADLNKE 111 (434)
T ss_pred cCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCc-CeeeecCCCceEEEEEecCcCCccccchhhhCcc
Confidence 4688999998765332 1 122 388999999999999 566665 1 1 10
Q ss_pred -e-e---eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEE
Q 038439 47 -P-C---VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYV 120 (179)
Q Consensus 47 -~-~---~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~v 120 (179)
- + +.+|...|..++|+|+ .++++++.|..+++||+..+..+..+..|..-+..++|.|.++++++-+.|...+.
T Consensus 112 ~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~ 191 (434)
T KOG1009|consen 112 KWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEG 191 (434)
T ss_pred ceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccce
Confidence 1 1 6678889999999999 99999999999999999999999999999999999999999999999888886666
Q ss_pred EEcCC
Q 038439 121 YHKEI 125 (179)
Q Consensus 121 wd~~~ 125 (179)
+.+..
T Consensus 192 ~~~~~ 196 (434)
T KOG1009|consen 192 FSAKL 196 (434)
T ss_pred eeeee
Confidence 65543
No 179
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=5.2e-15 Score=99.97 Aligned_cols=153 Identities=14% Similarity=0.251 Sum_probs=111.8
Q ss_pred CCccEEEEEcCCceeEEeec--CCCceeEEEEcCCCCeEEEEe--------------CCCce----------e--eeccc
Q 038439 2 AYGKVKVWCTRQEASVLNID--MKANICCVKYNPGSSNYIAKY--------------QSTAP----------C--VHGHK 53 (179)
Q Consensus 2 ~d~~i~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~--------------~~~~~----------~--~~~~~ 53 (179)
.|-.|++|+-.. ++...+. ....|++++|-|.+..-+++| +..++ + ..+|
T Consensus 118 nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh- 195 (445)
T KOG2139|consen 118 NDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH- 195 (445)
T ss_pred cCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCcccccccccccccccchhheeCCCC-
Confidence 578899999766 4444444 456799999999887777776 11111 1 3344
Q ss_pred CceeEEEEeeC-CeEEEecC-CCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccc
Q 038439 54 KAVSYVKFLSN-DELASAST-DSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTW 131 (179)
Q Consensus 54 ~~i~~~~~~~~-~~l~~~~~-d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~ 131 (179)
.+|+++.|.+| ..+++++. |..|+|||..++..+.......+.+.-+.|+|||.+|+.+.-|+..++|+.....-...
T Consensus 196 ~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~er 275 (445)
T KOG2139|consen 196 NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKER 275 (445)
T ss_pred ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecc
Confidence 68999999999 88888875 66899999998876654433456788899999999999999999999996554322212
Q ss_pred cccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeC
Q 038439 132 HRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANS 168 (179)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 168 (179)
+... .+.|...+|+|+|+.|+....
T Consensus 276 w~lg------------sgrvqtacWspcGsfLLf~~s 300 (445)
T KOG2139|consen 276 WILG------------SGRVQTACWSPCGSFLLFACS 300 (445)
T ss_pred eecc------------CCceeeeeecCCCCEEEEEEc
Confidence 2221 558999999999997765543
No 180
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.69 E-value=1.8e-15 Score=104.65 Aligned_cols=122 Identities=19% Similarity=0.220 Sum_probs=90.4
Q ss_pred eecccCceeEEEEeeC--CeEEEecCCCcEEEEecCCC--c--ceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEE
Q 038439 49 VHGHKKAVSYVKFLSN--DELASASTDSTLRLWDVKEN--L--PVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYH 122 (179)
Q Consensus 49 ~~~~~~~i~~~~~~~~--~~l~~~~~d~~v~iwd~~~~--~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd 122 (179)
+.-|...|..++++|. .+|+|++.|++++|||++.- + +......|...|.++.|+|.+-.|++.+.|..|+|||
T Consensus 318 ~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~d 397 (498)
T KOG4328|consen 318 LRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFD 397 (498)
T ss_pred hhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEee
Confidence 4457778999999999 78999999999999999862 2 2233346889999999999877799999999999999
Q ss_pred cC----CCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439 123 KE----ISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVL 177 (179)
Q Consensus 123 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 177 (179)
.. .-.+...+...... +. --......|.|+.+++++|..-..|-|+|-
T Consensus 398 ss~~sa~~~p~~~I~Hn~~t------~R-wlT~fKA~W~P~~~li~vg~~~r~IDv~~~ 449 (498)
T KOG4328|consen 398 SSCISAKDEPLGTIPHNNRT------GR-WLTPFKAAWDPDYNLIVVGRYPRPIDVFDG 449 (498)
T ss_pred cccccccCCccceeeccCcc------cc-cccchhheeCCCccEEEEeccCcceeEEcC
Confidence 84 22233333221110 00 012345679999999999999888888874
No 181
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.69 E-value=2.8e-14 Score=101.78 Aligned_cols=163 Identities=22% Similarity=0.401 Sum_probs=127.1
Q ss_pred CccEEEEEcCC-ceeEEee-cCCCceeEEEEcCCCCeEEEEeC-----------CCcee--eecccCceeEEEEeeC-C-
Q 038439 3 YGKVKVWCTRQ-EASVLNI-DMKANICCVKYNPGSSNYIAKYQ-----------STAPC--VHGHKKAVSYVKFLSN-D- 65 (179)
Q Consensus 3 d~~i~vwd~~~-~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~-----------~~~~~--~~~~~~~i~~~~~~~~-~- 65 (179)
|+.+.+|+... ......+ .|...|..++|+|++..+++.+. ....+ +.+|...+.+++|+|+ .
T Consensus 133 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 212 (466)
T COG2319 133 DGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGL 212 (466)
T ss_pred CccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcce
Confidence 88999999997 5555554 58889999999999974554431 12233 6678999999999988 5
Q ss_pred eEEEecCCCcEEEEecCCCccee-eecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCcc-ccccccCCCCCCCCc
Q 038439 66 ELASASTDSTLRLWDVKENLPVR-TFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKP-VTWHRFSSPDMDDTD 143 (179)
Q Consensus 66 ~l~~~~~d~~v~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~-~~~~~~~~~~~~~~~ 143 (179)
.+++++.|+.+++||...+..+. .+..|.... ...|+|++.++++++.|+.+++|+.+.... .... ..
T Consensus 213 ~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--~~------- 282 (466)
T COG2319 213 LIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL--SG------- 282 (466)
T ss_pred EEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE--ec-------
Confidence 55555999999999988777777 577777665 448999998889999999999999997665 2222 11
Q ss_pred ccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439 144 EDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 144 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
| ...+.++.|.|++..+++++.|+.+.+||+.
T Consensus 283 --~-~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~ 314 (466)
T COG2319 283 --H-SSSVLSVAFSPDGKLLASGSSDGTVRLWDLE 314 (466)
T ss_pred --C-CccEEEEEECCCCCEEEEeeCCCcEEEEEcC
Confidence 1 6689999999988888888889889999875
No 182
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.69 E-value=1.2e-15 Score=111.14 Aligned_cols=166 Identities=15% Similarity=0.164 Sum_probs=124.4
Q ss_pred CCCccEEEEEcCCcee-EE-----eec-------CCCceeEEEEcCCCCeEEEEe--------------CCCc-----ee
Q 038439 1 MAYGKVKVWCTRQEAS-VL-----NID-------MKANICCVKYNPGSSNYIAKY--------------QSTA-----PC 48 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~~-~~-----~~~-------~~~~v~~~~~~~~~~~~~~~~--------------~~~~-----~~ 48 (179)
|.||.|..|+++.... .. ... ....+++++|.|..+..+++| .... ..
T Consensus 312 ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~ 391 (555)
T KOG1587|consen 312 SSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGH 391 (555)
T ss_pred ecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccccccc
Confidence 4699999998765322 11 111 224589999999887777777 1111 12
Q ss_pred --eecccCceeEEEEeeC-CeEEEecCCCcEEEEecC-CCcceeeecCCCCCeEEEEEeeC-CCEEEEeccCCcEEEEEc
Q 038439 49 --VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVK-ENLPVRTFRGHMNEKNFVGLTVN-SEYIACGSESNEVYVYHK 123 (179)
Q Consensus 49 --~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~-~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~d~~v~vwd~ 123 (179)
...|.++|.++.++|- ..++..+.|.+|+||... ...++..+..+...+++++|||- ...|+++..||.+.+||+
T Consensus 392 ~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDL 471 (555)
T KOG1587|consen 392 STFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDL 471 (555)
T ss_pred ccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhh
Confidence 5567889999999998 444444449999999987 67788888877778999999995 567889999999999999
Q ss_pred CCCcc--ccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439 124 EISKP--VTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 124 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
..... +...... ....+.+.|+++|+.|++|...|++++|++.
T Consensus 472 l~~~~~Pv~s~~~~------------~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 472 LQDDEEPVLSQKVC------------SPALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred hccccCCccccccc------------ccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 87543 3333322 4456778899999999999999999999985
No 183
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=5.2e-15 Score=97.91 Aligned_cols=155 Identities=14% Similarity=0.142 Sum_probs=110.6
Q ss_pred CCCceeEEEEcCCCCeEEEEe--------C------CCcee--eecccCceeEEEEeeC---CeEEEecCCCcEEEEecC
Q 038439 22 MKANICCVKYNPGSSNYIAKY--------Q------STAPC--VHGHKKAVSYVKFLSN---DELASASTDSTLRLWDVK 82 (179)
Q Consensus 22 ~~~~v~~~~~~~~~~~~~~~~--------~------~~~~~--~~~~~~~i~~~~~~~~---~~l~~~~~d~~v~iwd~~ 82 (179)
|++-|.++.|.+.|+++.+++ + +-.+. .+.|.+.|..+.|.+. +.++++|.|+++.||.-.
T Consensus 12 h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~ 91 (361)
T KOG2445|consen 12 HKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQ 91 (361)
T ss_pred CcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeec
Confidence 677899999999997776666 1 11122 6789999999999766 678999999999999863
Q ss_pred C---------CcceeeecCCCCCeEEEEEeeC--CCEEEEeccCCcEEEEEcCCCccccccccCC-----------C---
Q 038439 83 E---------NLPVRTFRGHMNEKNFVGLTVN--SEYIACGSESNEVYVYHKEISKPVTWHRFSS-----------P--- 137 (179)
Q Consensus 83 ~---------~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~-----------~--- 137 (179)
. -....++....+.|..+.|.|. |-.+++++.||.++||+....-.+..+.+.. +
T Consensus 92 ~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~ 171 (361)
T KOG2445|consen 92 EKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQP 171 (361)
T ss_pred ccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCc
Confidence 2 1233456667889999999995 7789999999999999864321111111000 0
Q ss_pred ------------------------------------------CCCCCcccCCcceEEEEEEccC----CCeEEEEeCCCc
Q 038439 138 ------------------------------------------DMDDTDEDAGSYFISAVCWKSD----SPTMLTANSQGT 171 (179)
Q Consensus 138 ------------------------------------------~~~~~~~~~~~~~i~~~~~~~~----~~~l~~~~~dg~ 171 (179)
.......+ +..+|+.++|.|+ -..||+++.||
T Consensus 172 ~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d-~~dpI~di~wAPn~Gr~y~~lAvA~kDg- 249 (361)
T KOG2445|consen 172 CFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPD-HTDPIRDISWAPNIGRSYHLLAVATKDG- 249 (361)
T ss_pred ceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCC-CCCcceeeeeccccCCceeeEEEeecCc-
Confidence 00011122 3778999999994 35789999999
Q ss_pred EEEEeec
Q 038439 172 IKVLVLA 178 (179)
Q Consensus 172 i~iwd~~ 178 (179)
|+||.+.
T Consensus 250 v~I~~v~ 256 (361)
T KOG2445|consen 250 VRIFKVK 256 (361)
T ss_pred EEEEEEe
Confidence 9999975
No 184
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.67 E-value=1.7e-16 Score=114.19 Aligned_cols=114 Identities=18% Similarity=0.261 Sum_probs=98.2
Q ss_pred cCceeEEEEeeC--CeEEEecCCCcEEEEecCCC-------cceeeecCCCCCeEEEEEeeC-CCEEEEeccCCcEEEEE
Q 038439 53 KKAVSYVKFLSN--DELASASTDSTLRLWDVKEN-------LPVRTFRGHMNEKNFVGLTVN-SEYIACGSESNEVYVYH 122 (179)
Q Consensus 53 ~~~i~~~~~~~~--~~l~~~~~d~~v~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~d~~v~vwd 122 (179)
...|+.+.|.|- ..|+.++.|+.|++|.+..+ .+...++.|...|+++.|+|- ...+++++.|-+|++||
T Consensus 627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWD 706 (1012)
T KOG1445|consen 627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWD 706 (1012)
T ss_pred CceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeee
Confidence 456899999997 88999999999999998753 345567789999999999995 56789999999999999
Q ss_pred cCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439 123 KEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
+++++....+. +| ...|..++|+|+|+.+++.+.||+|++|+.+
T Consensus 707 l~~~~~~~~l~-----------gH-tdqIf~~AWSpdGr~~AtVcKDg~~rVy~Pr 750 (1012)
T KOG1445|consen 707 LANAKLYSRLV-----------GH-TDQIFGIAWSPDGRRIATVCKDGTLRVYEPR 750 (1012)
T ss_pred hhhhhhhheec-----------cC-cCceeEEEECCCCcceeeeecCceEEEeCCC
Confidence 99988765543 22 7889999999999999999999999999865
No 185
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.67 E-value=1.1e-14 Score=106.17 Aligned_cols=163 Identities=21% Similarity=0.356 Sum_probs=121.2
Q ss_pred ccEEEEEcCCc-eeEEeecCCCceeEEEEcCCCCeEEEEe------------CC----Ccee---eecccCceeEEEEee
Q 038439 4 GKVKVWCTRQE-ASVLNIDMKANICCVKYNPGSSNYIAKY------------QS----TAPC---VHGHKKAVSYVKFLS 63 (179)
Q Consensus 4 ~~i~vwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~------------~~----~~~~---~~~~~~~i~~~~~~~ 63 (179)
+.+.||++... ++...+....+|++++|+|..+.++++| .. ..++ ...|..+++.+.|..
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~ 301 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ 301 (555)
T ss_pred ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence 47899999876 6777788999999999999999999998 11 1122 456888999999988
Q ss_pred C-C--eEEEecCCCcEEEEecCCCc-------------------------------------------------------
Q 038439 64 N-D--ELASASTDSTLRLWDVKENL------------------------------------------------------- 85 (179)
Q Consensus 64 ~-~--~l~~~~~d~~v~iwd~~~~~------------------------------------------------------- 85 (179)
+ . .++++|.||.|+.|+++.-.
T Consensus 302 ~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~ 381 (555)
T KOG1587|consen 302 NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYT 381 (555)
T ss_pred cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCc
Confidence 8 3 48899999999999875310
Q ss_pred --c------eeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcC-CCccccccccCCCCCCCCcccCCcceEEEEEE
Q 038439 86 --P------VRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKE-ISKPVTWHRFSSPDMDDTDEDAGSYFISAVCW 156 (179)
Q Consensus 86 --~------~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 156 (179)
. ...+..|.+.|+.+.++|-+..++..+.|..+++|... ...++..+... ...+++++|
T Consensus 382 ~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~------------~~~v~~vaW 449 (555)
T KOG1587|consen 382 PAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSS------------PDYVTDVAW 449 (555)
T ss_pred ccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhc------------cceeeeeEE
Confidence 0 11233456788888888876554444448999999887 55565554431 445999999
Q ss_pred ccCCC-eEEEEeCCCcEEEEeec
Q 038439 157 KSDSP-TMLTANSQGTIKVLVLA 178 (179)
Q Consensus 157 ~~~~~-~l~~~~~dg~i~iwd~~ 178 (179)
||... .++++..||.+.+|||.
T Consensus 450 SptrpavF~~~d~~G~l~iWDLl 472 (555)
T KOG1587|consen 450 SPTRPAVFATVDGDGNLDIWDLL 472 (555)
T ss_pred cCcCceEEEEEcCCCceehhhhh
Confidence 99664 56777779999999985
No 186
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=7.8e-15 Score=105.99 Aligned_cols=156 Identities=10% Similarity=0.111 Sum_probs=103.9
Q ss_pred ccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe-CCC------------cee-eecccCceeEEEEeeC-CeEE
Q 038439 4 GKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY-QST------------APC-VHGHKKAVSYVKFLSN-DELA 68 (179)
Q Consensus 4 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~------------~~~-~~~~~~~i~~~~~~~~-~~l~ 68 (179)
..|++||+.+++........+....++|+|+|+.++.+. ..+ +.. +..+...+....|+|+ ..++
T Consensus 228 ~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~ 307 (429)
T PRK01742 228 SQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSIL 307 (429)
T ss_pred cEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEE
Confidence 479999998876543333344456789999997776654 121 111 3345556778999999 6555
Q ss_pred Ee-cCCCcEEEEecCCC-cceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccC
Q 038439 69 SA-STDSTLRLWDVKEN-LPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDA 146 (179)
Q Consensus 69 ~~-~~d~~v~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 146 (179)
.+ ..++..++|++... .....+ .+.. ....|+|+|++++..+.++ +.+||+.+++......
T Consensus 308 f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~------------- 370 (429)
T PRK01742 308 FTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSS------------- 370 (429)
T ss_pred EEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecC-------------
Confidence 44 46788888876532 222333 2332 4578999999998877765 5569998876542211
Q ss_pred CcceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439 147 GSYFISAVCWKSDSPTMLTANSQGTIKVLVL 177 (179)
Q Consensus 147 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 177 (179)
......+.|+|+|++|+.++.++.+.+|++
T Consensus 371 -~~~~~~~~~sPdG~~i~~~s~~g~~~~l~~ 400 (429)
T PRK01742 371 -TFLDESPSISPNGIMIIYSSTQGLGKVLQL 400 (429)
T ss_pred -CCCCCCceECCCCCEEEEEEcCCCceEEEE
Confidence 111245779999999999999998888875
No 187
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.66 E-value=1.7e-15 Score=98.36 Aligned_cols=117 Identities=18% Similarity=0.228 Sum_probs=96.6
Q ss_pred eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCCC--cc--eeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEc
Q 038439 49 VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKEN--LP--VRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHK 123 (179)
Q Consensus 49 ~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~--~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~ 123 (179)
...|..++.++.|.+. ..=++++.+..+.+|++... .+ -....-....+..+...||++.+|+++.|+.++||..
T Consensus 201 ~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVysw 280 (323)
T KOG0322|consen 201 NASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSW 280 (323)
T ss_pred hhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEe
Confidence 5678999999999877 66678888888899988653 11 1122223456788999999999999999999999999
Q ss_pred CCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439 124 EISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVL 177 (179)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 177 (179)
++.+++..+.. |+..|++++|+|+.+.+|+++.|++|.+|++
T Consensus 281 rtl~pLAVLky------------Hsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 281 RTLNPLAVLKY------------HSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred ccCCchhhhhh------------hhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 99999887764 2788999999999999999999999999986
No 188
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.66 E-value=1.4e-13 Score=96.54 Aligned_cols=170 Identities=8% Similarity=0.095 Sum_probs=111.5
Q ss_pred CCccEEEEEcCC-ce--eEEeecCCCceeEEEEcCCCCeEEEEeCCCcee----ee-----------cccCceeEEEEee
Q 038439 2 AYGKVKVWCTRQ-EA--SVLNIDMKANICCVKYNPGSSNYIAKYQSTAPC----VH-----------GHKKAVSYVKFLS 63 (179)
Q Consensus 2 ~d~~i~vwd~~~-~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~----~~-----------~~~~~i~~~~~~~ 63 (179)
.|+.|++||+.+ ++ .+..+...+....++++|+++.+++++.....+ +. ........+.++|
T Consensus 10 ~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~ 89 (330)
T PRK11028 10 ESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDH 89 (330)
T ss_pred CCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECC
Confidence 589999999964 33 556666667788999999997776665111111 11 1122446788999
Q ss_pred C-CeEEEec-CCCcEEEEecCC-Cc---ceeeecCCCCCeEEEEEeeCCCEEEEe-ccCCcEEEEEcCCCccccccccCC
Q 038439 64 N-DELASAS-TDSTLRLWDVKE-NL---PVRTFRGHMNEKNFVGLTVNSEYIACG-SESNEVYVYHKEISKPVTWHRFSS 136 (179)
Q Consensus 64 ~-~~l~~~~-~d~~v~iwd~~~-~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~d~~v~vwd~~~~~~~~~~~~~~ 136 (179)
+ +.+++++ .++.|.+|++.+ +. .+..+. +......++++|++++++++ ..++.|.+||+.+...+.......
T Consensus 90 ~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~ 168 (330)
T PRK11028 90 QGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAE 168 (330)
T ss_pred CCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCc
Confidence 9 7776665 488999999974 22 222222 23346778899999988655 456999999998743321100000
Q ss_pred CCCCCCcccCCcceEEEEEEccCCCeEEEEeC-CCcEEEEeec
Q 038439 137 PDMDDTDEDAGSYFISAVCWKSDSPTMLTANS-QGTIKVLVLA 178 (179)
Q Consensus 137 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~ 178 (179)
... .. ......+.|+|++++++++.. ++.|.+|+++
T Consensus 169 ~~~-----~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~ 205 (330)
T PRK11028 169 VTT-----VE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLK 205 (330)
T ss_pred eec-----CC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEe
Confidence 000 00 334677899999999988877 8999999985
No 189
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.65 E-value=3.5e-15 Score=101.81 Aligned_cols=145 Identities=17% Similarity=0.284 Sum_probs=116.7
Q ss_pred cCCCceeEEEEcCCCCeEEEEe--------------CC-C--cee-----eecccCceeEEEEeeC-CeEEEecCCCcEE
Q 038439 21 DMKANICCVKYNPGSSNYIAKY--------------QS-T--APC-----VHGHKKAVSYVKFLSN-DELASASTDSTLR 77 (179)
Q Consensus 21 ~~~~~v~~~~~~~~~~~~~~~~--------------~~-~--~~~-----~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~ 77 (179)
....++.++.|.++....+++| .. + ..+ +..|...|+++.|+|+ ..|++|+.++.|.
T Consensus 11 H~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~ 90 (434)
T KOG1009|consen 11 HDHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVF 90 (434)
T ss_pred cCCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEE
Confidence 3567899999999876466655 11 1 122 7889999999999999 9999999999999
Q ss_pred EEecC--------C--------CcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCC
Q 038439 78 LWDVK--------E--------NLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDD 141 (179)
Q Consensus 78 iwd~~--------~--------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~ 141 (179)
+|-.. + ......+.+|...+..++|+|++.++++++.|+.+++||+..++......-
T Consensus 91 lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~d------- 163 (434)
T KOG1009|consen 91 LWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDD------- 163 (434)
T ss_pred EEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccc-------
Confidence 99765 2 112334567889999999999999999999999999999999988766432
Q ss_pred CcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439 142 TDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVL 177 (179)
Q Consensus 142 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 177 (179)
|...+..++|.|-++++++-+.|...+.+.+
T Consensus 164 -----h~~yvqgvawDpl~qyv~s~s~dr~~~~~~~ 194 (434)
T KOG1009|consen 164 -----HEHYVQGVAWDPLNQYVASKSSDRHPEGFSA 194 (434)
T ss_pred -----cccccceeecchhhhhhhhhccCcccceeee
Confidence 2778999999999999999888876666654
No 190
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.65 E-value=1.5e-14 Score=104.93 Aligned_cols=162 Identities=17% Similarity=0.255 Sum_probs=109.7
Q ss_pred CCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEeCCCcee-----------eecccCc--------------
Q 038439 2 AYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKYQSTAPC-----------VHGHKKA-------------- 55 (179)
Q Consensus 2 ~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~-------------- 55 (179)
.+..+.+||++.|..++++. |++.|.+++|+.+| ..+++|...+.+ -..|+..
T Consensus 31 Ag~rlliyD~ndG~llqtLKgHKDtVycVAys~dG-krFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~La 109 (1081)
T KOG1538|consen 31 AGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDG-KRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLA 109 (1081)
T ss_pred cCCEEEEEeCCCcccccccccccceEEEEEEccCC-ceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhh
Confidence 46789999999999999986 89999999999999 566666111111 1123333
Q ss_pred -------------------------eeEEEEeeC-CeEEEecCCCcEEEEecCCC------------cce----------
Q 038439 56 -------------------------VSYVKFLSN-DELASASTDSTLRLWDVKEN------------LPV---------- 87 (179)
Q Consensus 56 -------------------------i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~------------~~~---------- 87 (179)
+.+.+|..| .+++.|-.+|+|.+-+-... .++
T Consensus 110 sCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg 189 (1081)
T KOG1538|consen 110 SCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSG 189 (1081)
T ss_pred hcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCC
Confidence 344555555 66677777777765543210 000
Q ss_pred ------------------eeecC--------CCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCC
Q 038439 88 ------------------RTFRG--------HMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDD 141 (179)
Q Consensus 88 ------------------~~~~~--------~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~ 141 (179)
.++.+ -.-...|+.+.++|++++.|+.|+.+++|-.+ |-.+-+. ...
T Consensus 190 ~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~-GvrLGTv--g~~---- 262 (1081)
T KOG1538|consen 190 EGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRD-GVRLGTV--GEQ---- 262 (1081)
T ss_pred CCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCCCceEEEeec-CeEEeec--ccc----
Confidence 00111 11134578899999999999999999999754 3222222 111
Q ss_pred CcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439 142 TDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVL 177 (179)
Q Consensus 142 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 177 (179)
...|+.++..|++++++.|+.||+|-.|++
T Consensus 263 ------D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 263 ------DSWIWTVQAKPNSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred ------ceeEEEEEEccCCceEEEEEccCeeehhhh
Confidence 779999999999999999999999998886
No 191
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.64 E-value=1.3e-14 Score=101.82 Aligned_cols=119 Identities=14% Similarity=0.287 Sum_probs=94.4
Q ss_pred eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCcceeeecCC-CCCeEEEEEeeCCCE-EEEeccCCcEEEEEcCC
Q 038439 49 VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRGH-MNEKNFVGLTVNSEY-IACGSESNEVYVYHKEI 125 (179)
Q Consensus 49 ~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~-~~~~~~d~~v~vwd~~~ 125 (179)
+++|...|+++.|+.. .+|++++..|.|.|..+.++....+|... ...++-+.|+|..++ |.+++.+|.|.+||+..
T Consensus 117 lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g 196 (673)
T KOG4378|consen 117 LKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQG 196 (673)
T ss_pred ccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccC
Confidence 6677888888888777 88888888888888888877766677654 345678999997665 56789999999999998
Q ss_pred CccccccccCCCCCCCCcccCCcceEEEEEEccC-CCeEEEEeCCCcEEEEeec
Q 038439 126 SKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSD-SPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~iwd~~ 178 (179)
..++..+. ..|..+...++|+|. ..+|++.+.|.+|.+||++
T Consensus 197 ~sp~~~~~-----------~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~ 239 (673)
T KOG4378|consen 197 MSPIFHAS-----------EAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIR 239 (673)
T ss_pred CCcccchh-----------hhccCCcCcceecCCccceEEEecccceEEEeecc
Confidence 77776553 223788899999994 5677889999999999975
No 192
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=3.8e-15 Score=106.29 Aligned_cols=167 Identities=20% Similarity=0.282 Sum_probs=126.6
Q ss_pred CccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEeCCC---------cee--eecccCceeEEEEeeC-CeEEE
Q 038439 3 YGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKYQST---------APC--VHGHKKAVSYVKFLSN-DELAS 69 (179)
Q Consensus 3 d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~---------~~~--~~~~~~~i~~~~~~~~-~~l~~ 69 (179)
...|.|+++.....+..|. .++-|.++.|+|...+++++.... +.+ +......|..++.+|. ..|+.
T Consensus 545 ~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~ 624 (733)
T KOG0650|consen 545 NKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLIL 624 (733)
T ss_pred cceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEE
Confidence 3567777777766665563 677899999999998888876211 111 3334567899999998 88999
Q ss_pred ecCCCcEEEEecCC-CcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCC-------CccccccccCCCCCCC
Q 038439 70 ASTDSTLRLWDVKE-NLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEI-------SKPVTWHRFSSPDMDD 141 (179)
Q Consensus 70 ~~~d~~v~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~-------~~~~~~~~~~~~~~~~ 141 (179)
++.|+.++.+|+.- .++.++++.|...+++++|++.-.+|++|+.||.+.|+.-.- ...+....+..|...
T Consensus 625 gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~- 703 (733)
T KOG0650|consen 625 GSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKT- 703 (733)
T ss_pred ecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceee-
Confidence 99999999999874 467788888999999999999999999999999999985321 112222223222111
Q ss_pred CcccCCcceEEEEEEccCCCeEEEEeCCCcEEEE
Q 038439 142 TDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVL 175 (179)
Q Consensus 142 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw 175 (179)
....|..+.|+|...+|++++.||+|++|
T Consensus 704 -----~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 704 -----NDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred -----cccceEeecccCCCceEEecCCCceEEee
Confidence 14468899999999999999999999998
No 193
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.64 E-value=2.2e-14 Score=95.45 Aligned_cols=173 Identities=11% Similarity=0.126 Sum_probs=122.3
Q ss_pred ccEEEEEcCCce---eEEeec-CCCceeEEEEcCCCCeEEEEe-------------CCCcee--eecccCceeEEEEeeC
Q 038439 4 GKVKVWCTRQEA---SVLNID-MKANICCVKYNPGSSNYIAKY-------------QSTAPC--VHGHKKAVSYVKFLSN 64 (179)
Q Consensus 4 ~~i~vwd~~~~~---~~~~~~-~~~~v~~~~~~~~~~~~~~~~-------------~~~~~~--~~~~~~~i~~~~~~~~ 64 (179)
..|.||...... ...++. |...|+.++|+|..++++.++ ..-++. +..++...+++.|+|.
T Consensus 32 ~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~ 111 (361)
T KOG1523|consen 32 HEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPK 111 (361)
T ss_pred ceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCc
Confidence 356677655443 455554 888999999999998888888 111222 6778999999999999
Q ss_pred -CeEEEecCCCcEEEEecCCCcce----eeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcC-----CCcccccccc
Q 038439 65 -DELASASTDSTLRLWDVKENLPV----RTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKE-----ISKPVTWHRF 134 (179)
Q Consensus 65 -~~l~~~~~d~~v~iwd~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~-----~~~~~~~~~~ 134 (179)
+.|++||....|.||-++...-- +.-+.+.+.|.+++|+|++-++++|+.|+..+++..- .......+.-
T Consensus 112 enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgs 191 (361)
T KOG1523|consen 112 ENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGS 191 (361)
T ss_pred CceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCcc
Confidence 99999999999999988754221 1223457789999999999999999999999998632 1100000000
Q ss_pred CCC--CCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439 135 SSP--DMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVL 177 (179)
Q Consensus 135 ~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 177 (179)
..+ ....+.. ...+.+..+.|+|+|+.|+-.+.|..+.+-|-
T Consensus 192 k~PFG~lm~E~~-~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da 235 (361)
T KOG1523|consen 192 KMPFGQLMSEAS-SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDA 235 (361)
T ss_pred CCcHHHHHHhhc-cCCCceeeeEeCCCCCEeeEecCCCceEEeec
Confidence 000 0000000 11678999999999999999999999888663
No 194
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=1.5e-14 Score=102.86 Aligned_cols=112 Identities=19% Similarity=0.235 Sum_probs=89.1
Q ss_pred EEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccC
Q 038439 67 LASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDA 146 (179)
Q Consensus 67 l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 146 (179)
|+.++....|.-+++..|+-+..+....+.++++..++...+|++|+.+|.|..||.++...+..+..............
T Consensus 148 ly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~ 227 (703)
T KOG2321|consen 148 LYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDA 227 (703)
T ss_pred EEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccc
Confidence 44444455677789999999999988889999999999988999999999999999999877766655433211111111
Q ss_pred CcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439 147 GSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA 179 (179)
Q Consensus 147 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 179 (179)
...|+++.|+.+|-.+++|+.+|.+.||||++
T Consensus 228 -~~svTal~F~d~gL~~aVGts~G~v~iyDLRa 259 (703)
T KOG2321|consen 228 -APSVTALKFRDDGLHVAVGTSTGSVLIYDLRA 259 (703)
T ss_pred -cCcceEEEecCCceeEEeeccCCcEEEEEccc
Confidence 44699999999999999999999999999974
No 195
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=2.6e-14 Score=103.27 Aligned_cols=160 Identities=15% Similarity=0.071 Sum_probs=104.6
Q ss_pred CccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe-C------------CCcee-eecccCceeEEEEeeC-CeE
Q 038439 3 YGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY-Q------------STAPC-VHGHKKAVSYVKFLSN-DEL 67 (179)
Q Consensus 3 d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~------------~~~~~-~~~~~~~i~~~~~~~~-~~l 67 (179)
+..|.+||...........+...+.+.+|+|+|+.++.++ . .++.. +....+....++|+|+ ..|
T Consensus 183 ~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~L 262 (429)
T PRK01742 183 PYEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRL 262 (429)
T ss_pred eEEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEE
Confidence 5789999987665444345777899999999998777665 1 11111 1112223446899999 777
Q ss_pred EEe-cCCCcEEEE--ecCCCcceeeecCCCCCeEEEEEeeCCCEEEEec-cCCcEEEEEcCCCccccccccCCCCCCCCc
Q 038439 68 ASA-STDSTLRLW--DVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGS-ESNEVYVYHKEISKPVTWHRFSSPDMDDTD 143 (179)
Q Consensus 68 ~~~-~~d~~v~iw--d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~ 143 (179)
+.+ +.++.+.|| |+.+++ ...+..+...+....|+|||+.|+..+ .++...+|++......... .. .
T Consensus 263 a~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~-l~-~------ 333 (429)
T PRK01742 263 AFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASL-VG-G------ 333 (429)
T ss_pred EEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-ec-C------
Confidence 665 467766655 665554 455555666778899999999876544 5788888887543221111 11 1
Q ss_pred ccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439 144 EDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 144 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
.. ....|+|+|++|+..+.++ +.+||+.
T Consensus 334 ----~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~ 361 (429)
T PRK01742 334 ----RG--YSAQISADGKTLVMINGDN-VVKQDLT 361 (429)
T ss_pred ----CC--CCccCCCCCCEEEEEcCCC-EEEEECC
Confidence 21 3578999999998887765 5568875
No 196
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=6.4e-14 Score=103.55 Aligned_cols=114 Identities=17% Similarity=0.228 Sum_probs=95.1
Q ss_pred cccCceeEEEEeeC-CeEEEecCCCcEEEEecCC----CcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCC
Q 038439 51 GHKKAVSYVKFLSN-DELASASTDSTLRLWDVKE----NLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEI 125 (179)
Q Consensus 51 ~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~ 125 (179)
.|...+++.+++|+ ++++++..||.|.+|.--. ....+.+.=|...|.+++|+++|.++++|+.++.+-+|.+.+
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T 282 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET 282 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecC
Confidence 35667899999999 9999999999999996322 223445666788999999999999999999999999999999
Q ss_pred CccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439 126 SKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVL 177 (179)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 177 (179)
+++...-++ ...|..+.++||+.+.+....|+.|.+-..
T Consensus 283 ~~kqfLPRL-------------gs~I~~i~vS~ds~~~sl~~~DNqI~li~~ 321 (792)
T KOG1963|consen 283 GKKQFLPRL-------------GSPILHIVVSPDSDLYSLVLEDNQIHLIKA 321 (792)
T ss_pred CCccccccc-------------CCeeEEEEEcCCCCeEEEEecCceEEEEec
Confidence 884333233 778999999999999999999999988754
No 197
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.64 E-value=6.4e-14 Score=95.37 Aligned_cols=167 Identities=13% Similarity=0.215 Sum_probs=130.1
Q ss_pred CCccEEEEEcCCc----eeEEeecCCCceeEEEEcCCCCeEEEEeC-------------CCceeeeccc-----------
Q 038439 2 AYGKVKVWCTRQE----ASVLNIDMKANICCVKYNPGSSNYIAKYQ-------------STAPCVHGHK----------- 53 (179)
Q Consensus 2 ~d~~i~vwd~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~----------- 53 (179)
.+|.+.+|..+.+ ..+..+.....+..+.-+|..+.++++|. ..++++.+..
T Consensus 123 ~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVP 202 (412)
T KOG3881|consen 123 SSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVP 202 (412)
T ss_pred cCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceee
Confidence 4688899987743 23444556677888888888888888771 1122221111
Q ss_pred CceeEEEEeeC---CeEEEecCCCcEEEEecCC-CcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccc
Q 038439 54 KAVSYVKFLSN---DELASASTDSTLRLWDVKE-NLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPV 129 (179)
Q Consensus 54 ~~i~~~~~~~~---~~l~~~~~d~~v~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~ 129 (179)
-.++++.|.+. ..|++++.-+.+|+||.+. .+++.++.-...++.++...|.++++++|..-+.+..||++.++..
T Consensus 203 vW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~ 282 (412)
T KOG3881|consen 203 VWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLL 282 (412)
T ss_pred eeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceee
Confidence 12467788776 7899999999999999986 5678888877889999999999999999999999999999998765
Q ss_pred cccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439 130 TWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA 179 (179)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 179 (179)
... +... .+.|+++..+|+++++++++-|..++|+|+.+
T Consensus 283 g~~-~kg~----------tGsirsih~hp~~~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 283 GCG-LKGI----------TGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred ccc-cCCc----------cCCcceEEEcCCCceEEeeccceeEEEeeccc
Confidence 442 2222 67899999999999999999999999999864
No 198
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.63 E-value=3e-15 Score=105.82 Aligned_cols=127 Identities=20% Similarity=0.276 Sum_probs=101.7
Q ss_pred eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCC--------CcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEE
Q 038439 49 VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKE--------NLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVY 119 (179)
Q Consensus 49 ~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~ 119 (179)
+..|...|..+.|.|. ..|++++.|+++.+|+++. -+++.+|++|.++|-|+++.++++.+++|+.||.|+
T Consensus 290 l~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~ 369 (577)
T KOG0642|consen 290 LRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIR 369 (577)
T ss_pred eecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceee
Confidence 5567788889999998 9999999999999999943 257889999999999999999999999999999999
Q ss_pred EEEcCCCcc-ccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439 120 VYHKEISKP-VTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 120 vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
.|++....- ...+ ..........+| ...++.+++++....|++++.||++++|+..
T Consensus 370 ~w~~p~n~dp~ds~--dp~vl~~~l~Gh-tdavw~l~~s~~~~~Llscs~DgTvr~w~~~ 426 (577)
T KOG0642|consen 370 CWNLPPNQDPDDSY--DPSVLSGTLLGH-TDAVWLLALSSTKDRLLSCSSDGTVRLWEPT 426 (577)
T ss_pred eeccCCCCCccccc--Ccchhccceecc-ccceeeeeecccccceeeecCCceEEeeccC
Confidence 998763221 1111 011112223344 8899999999999999999999999999853
No 199
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.62 E-value=7.4e-15 Score=103.62 Aligned_cols=113 Identities=16% Similarity=0.252 Sum_probs=90.5
Q ss_pred CceeEEEEeeC--CeEEEecCCCcEEEEecCCC----------------------------cceeeecCCCCCeEEEEEe
Q 038439 54 KAVSYVKFLSN--DELASASTDSTLRLWDVKEN----------------------------LPVRTFRGHMNEKNFVGLT 103 (179)
Q Consensus 54 ~~i~~~~~~~~--~~l~~~~~d~~v~iwd~~~~----------------------------~~~~~~~~~~~~v~~~~~~ 103 (179)
..++|++|.|. ..++.+-.+|.+.+||.... .++..+......|...+|+
T Consensus 220 tsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS 299 (636)
T KOG2394|consen 220 SSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFS 299 (636)
T ss_pred cceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEc
Confidence 57899999998 78888889999999976321 0111111124477889999
Q ss_pred eCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439 104 VNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 104 ~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
|||++||+.+.||.++|||..+.+.+..++-. -+...|++|+|||++|++|++|.-|.||.+.
T Consensus 300 ~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSY------------FGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~ 362 (636)
T KOG2394|consen 300 PDGKYLATVSQDGFLRIFDFDTQELLGVMKSY------------FGGLLCVCWSPDGKYIVTGGEDDLVTVWSFE 362 (636)
T ss_pred CCCceEEEEecCceEEEeeccHHHHHHHHHhh------------ccceEEEEEcCCccEEEecCCcceEEEEEec
Confidence 99999999999999999999987776554321 5678999999999999999999999999875
No 200
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=2.7e-14 Score=107.92 Aligned_cols=170 Identities=14% Similarity=0.190 Sum_probs=125.4
Q ss_pred CCccEEEEEcCCceeEEeec--CCCceeEEEEcCCCCeEEEEe--------------CCCcee--eecccCc--eeEEEE
Q 038439 2 AYGKVKVWCTRQEASVLNID--MKANICCVKYNPGSSNYIAKY--------------QSTAPC--VHGHKKA--VSYVKF 61 (179)
Q Consensus 2 ~d~~i~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~--------------~~~~~~--~~~~~~~--i~~~~~ 61 (179)
+-+.|+|||.....++..+. ....|+++.-+..+..++++| .....+ .+.|+.. |..+.+
T Consensus 1185 d~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~sl 1264 (1387)
T KOG1517|consen 1185 DVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSL 1264 (1387)
T ss_pred CeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEe
Confidence 44689999999888888876 445678877766655788888 111223 7788877 999999
Q ss_pred eeC--CeEEEecCCCcEEEEecCCCcceee--ecCC---CCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCcccccccc
Q 038439 62 LSN--DELASASTDSTLRLWDVKENLPVRT--FRGH---MNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRF 134 (179)
Q Consensus 62 ~~~--~~l~~~~~d~~v~iwd~~~~~~~~~--~~~~---~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~ 134 (179)
.+. +.|++|+.+|.|++||++....... +..| .+..+++..+++...+|+|+. +.|+||++... .+..+..
T Consensus 1265 q~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~-~l~~~k~ 1342 (1387)
T KOG1517|consen 1265 QRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGE-QLNIIKY 1342 (1387)
T ss_pred ecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChh-hhccccc
Confidence 996 7899999999999999997422222 2222 235899999999999999998 99999998743 3433332
Q ss_pred CCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439 135 SSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 135 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
... +.......+.+++|+|-.-.+++|+.|.+|.||...
T Consensus 1343 n~~-----F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~ 1381 (1387)
T KOG1517|consen 1343 NPG-----FMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCE 1381 (1387)
T ss_pred Ccc-----cccCcCCCcceeeecchhHhhhhccCCceEEEeecC
Confidence 211 111114567999999999999999999999999753
No 201
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.62 E-value=1.1e-13 Score=89.60 Aligned_cols=108 Identities=14% Similarity=0.242 Sum_probs=80.0
Q ss_pred CCCceeEEEEcCCCCeEEEE-eC----------CCceeeecccCceeEEEEeeC-CeEEEecC---CCcEEEEecCCCcc
Q 038439 22 MKANICCVKYNPGSSNYIAK-YQ----------STAPCVHGHKKAVSYVKFLSN-DELASAST---DSTLRLWDVKENLP 86 (179)
Q Consensus 22 ~~~~v~~~~~~~~~~~~~~~-~~----------~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~---d~~v~iwd~~~~~~ 86 (179)
..++|.+++|+|+|..++++ |. ..+++..-+...++.+.|+|+ +++++++. .|.+.+||.++.+.
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~ 137 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKK 137 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCcccEeEeecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEE
Confidence 45679999999999887655 31 122222223567789999999 88888764 46799999998888
Q ss_pred eeeecCCCCCeEEEEEeeCCCEEEEecc------CCcEEEEEcCCCcccccc
Q 038439 87 VRTFRGHMNEKNFVGLTVNSEYIACGSE------SNEVYVYHKEISKPVTWH 132 (179)
Q Consensus 87 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~------d~~v~vwd~~~~~~~~~~ 132 (179)
+.+... ..+..++|+|+|++++++.. |+.++||+.. |+.+...
T Consensus 138 i~~~~~--~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 138 ISTFEH--SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred eecccc--CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEec
Confidence 777653 34689999999999998764 6789999985 5555443
No 202
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=9.7e-14 Score=100.52 Aligned_cols=161 Identities=12% Similarity=0.112 Sum_probs=106.2
Q ss_pred ccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe-------------CCCcee-eecccCceeEEEEeeC-CeEE
Q 038439 4 GKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY-------------QSTAPC-VHGHKKAVSYVKFLSN-DELA 68 (179)
Q Consensus 4 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-------------~~~~~~-~~~~~~~i~~~~~~~~-~~l~ 68 (179)
..|.+||...........+...+.+.+|+|+|+.++.+. ..++.. +....+......|+|+ +.++
T Consensus 184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~ 263 (433)
T PRK04922 184 YALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLA 263 (433)
T ss_pred EEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEE
Confidence 468899987655555456778899999999998777665 111111 2223334457899999 6554
Q ss_pred -EecCCC--cEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEecc-CCc--EEEEEcCCCccccccccCCCCCCCC
Q 038439 69 -SASTDS--TLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSE-SNE--VYVYHKEISKPVTWHRFSSPDMDDT 142 (179)
Q Consensus 69 -~~~~d~--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-d~~--v~vwd~~~~~~~~~~~~~~~~~~~~ 142 (179)
+.+.++ .|.+||+.+++. ..+..+.......+|+|||++++..+. ++. |+++|+.+++... +...
T Consensus 264 ~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~------- 334 (433)
T PRK04922 264 LTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQ------- 334 (433)
T ss_pred EEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecC-------
Confidence 555555 599999987764 445555555567899999998876653 444 6666776655322 2111
Q ss_pred cccCCcceEEEEEEccCCCeEEEEeCCC---cEEEEeec
Q 038439 143 DEDAGSYFISAVCWKSDSPTMLTANSQG---TIKVLVLA 178 (179)
Q Consensus 143 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~iwd~~ 178 (179)
.......+|+|+|++++..+.++ .|.+||+.
T Consensus 335 -----g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~ 368 (433)
T PRK04922 335 -----GNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLS 368 (433)
T ss_pred -----CCCccCEEECCCCCEEEEEECCCCceeEEEEECC
Confidence 22344689999999998765543 58899875
No 203
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.62 E-value=7.4e-13 Score=94.49 Aligned_cols=165 Identities=21% Similarity=0.402 Sum_probs=124.9
Q ss_pred CCccEEEEEcCCce-eEEeecC-C-CceeEEEE-cCCCCeEEEE-e-----------CC-Ccee--eecccCceeEEEEe
Q 038439 2 AYGKVKVWCTRQEA-SVLNIDM-K-ANICCVKY-NPGSSNYIAK-Y-----------QS-TAPC--VHGHKKAVSYVKFL 62 (179)
Q Consensus 2 ~d~~i~vwd~~~~~-~~~~~~~-~-~~v~~~~~-~~~~~~~~~~-~-----------~~-~~~~--~~~~~~~i~~~~~~ 62 (179)
.|+.+.+|+..... ....+.. . ..+..+.+ ++++..+++. + .. .... +..|...|..+.|+
T Consensus 85 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 164 (466)
T COG2319 85 SDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFS 164 (466)
T ss_pred CCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEEC
Confidence 48899999998876 5555543 3 36777777 7777533333 2 11 2233 77899999999999
Q ss_pred eC-CeEEEecC-CCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCC-EEEEeccCCcEEEEEcCCCccccccccCCCCC
Q 038439 63 SN-DELASAST-DSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSE-YIACGSESNEVYVYHKEISKPVTWHRFSSPDM 139 (179)
Q Consensus 63 ~~-~~l~~~~~-d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~ 139 (179)
|+ ..+++++. |+.+++|++..++.+..+..|...+.+++|+|++. .+++++.|+.+++||...+..... ....+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~-~~~~~-- 241 (466)
T COG2319 165 PDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRS-TLSGH-- 241 (466)
T ss_pred CCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEee-ecCCC--
Confidence 99 77888875 99999999998888888888999999999999998 555558999999998886655542 11111
Q ss_pred CCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439 140 DDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 140 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
.... -..|+|++..+++++.|+.+++|+++
T Consensus 242 --------~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~ 271 (466)
T COG2319 242 --------SDSV-VSSFSPDGSLLASGSSDGTIRLWDLR 271 (466)
T ss_pred --------Ccce-eEeECCCCCEEEEecCCCcEEEeeec
Confidence 2222 22899999889999999999999975
No 204
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.62 E-value=5.7e-13 Score=88.71 Aligned_cols=124 Identities=17% Similarity=0.308 Sum_probs=92.9
Q ss_pred CccEEEEEcC-CceeEEeecC---CCceeEEEEcCCCCeEEEEe---------------CCCcee-eecccCceeEEEEe
Q 038439 3 YGKVKVWCTR-QEASVLNIDM---KANICCVKYNPGSSNYIAKY---------------QSTAPC-VHGHKKAVSYVKFL 62 (179)
Q Consensus 3 d~~i~vwd~~-~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~---------------~~~~~~-~~~~~~~i~~~~~~ 62 (179)
+++|+||... +.+.++.++- +....+++-+... .+++.- ..+.+. +.+|...|.|++.+
T Consensus 112 ~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k-~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln 190 (346)
T KOG2111|consen 112 ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNK-SLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALN 190 (346)
T ss_pred cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCc-eEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEc
Confidence 4678999887 5566666642 2333333222222 333332 222345 88999999999999
Q ss_pred eC-CeEEEecCCCc-EEEEecCCCcceeeecCC--CCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCc
Q 038439 63 SN-DELASASTDST-LRLWDVKENLPVRTFRGH--MNEKNFVGLTVNSEYIACGSESNEVYVYHKEISK 127 (179)
Q Consensus 63 ~~-~~l~~~~~d~~-v~iwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~ 127 (179)
-+ ..++|+|..|+ |||||..+++++..++.. ...+.+++|+|+..++++.+..|+++|+.++...
T Consensus 191 ~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 191 LQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred CCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence 99 89999999996 899999999999998753 4579999999999999999999999999988643
No 205
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=3.3e-13 Score=97.57 Aligned_cols=161 Identities=16% Similarity=0.068 Sum_probs=104.1
Q ss_pred ccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe-------------CCCcee-eecccCceeEEEEeeC-CeEE
Q 038439 4 GKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY-------------QSTAPC-VHGHKKAVSYVKFLSN-DELA 68 (179)
Q Consensus 4 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-------------~~~~~~-~~~~~~~i~~~~~~~~-~~l~ 68 (179)
..|.++|....+......+...+.+.+|+|+|+.++.+. ..++.. +....+.+..+.|+|+ ..|+
T Consensus 179 ~~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La 258 (429)
T PRK03629 179 YELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLA 258 (429)
T ss_pred eeEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEE
Confidence 368888887666555456777899999999998776654 112111 2222333456899999 6666
Q ss_pred Ee-cCCC--cEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccC-Cc--EEEEEcCCCccccccccCCCCCCCC
Q 038439 69 SA-STDS--TLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSES-NE--VYVYHKEISKPVTWHRFSSPDMDDT 142 (179)
Q Consensus 69 ~~-~~d~--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d-~~--v~vwd~~~~~~~~~~~~~~~~~~~~ 142 (179)
.. +.++ .|.+||+.+++.. .+..+...+....|+|||+.|+..+.+ +. |.++|+.+++... +...
T Consensus 259 ~~~~~~g~~~I~~~d~~tg~~~-~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~-lt~~------- 329 (429)
T PRK03629 259 FALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQR-ITWE------- 329 (429)
T ss_pred EEEcCCCCcEEEEEECCCCCEE-EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEE-eecC-------
Confidence 43 4444 5888999877654 344444567789999999988766543 44 4455666654322 2111
Q ss_pred cccCCcceEEEEEEccCCCeEEEEeCC---CcEEEEeec
Q 038439 143 DEDAGSYFISAVCWKSDSPTMLTANSQ---GTIKVLVLA 178 (179)
Q Consensus 143 ~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~iwd~~ 178 (179)
........|+|+|++|+..+.+ ..|.+||+.
T Consensus 330 -----~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~ 363 (429)
T PRK03629 330 -----GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLA 363 (429)
T ss_pred -----CCCccCEEECCCCCEEEEEEccCCCceEEEEECC
Confidence 2234568899999998876553 357788865
No 206
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.60 E-value=9.5e-15 Score=103.31 Aligned_cols=152 Identities=13% Similarity=0.178 Sum_probs=112.8
Q ss_pred CCCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEeCCCcee-----------eecccCceeEEEEeeC-CeE
Q 038439 1 MAYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKYQSTAPC-----------VHGHKKAVSYVKFLSN-DEL 67 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~i~~~~~~~~-~~l 67 (179)
++||.+.|.+ +.++....+. |.+.+.+-.|+|+|.-++.+|..+... +.....+|.|++|.|+ +.+
T Consensus 82 s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~v 160 (737)
T KOG1524|consen 82 SNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSI 160 (737)
T ss_pred cCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCce
Confidence 4678888877 4455555565 888999999999999999998443222 4456778999999999 544
Q ss_pred EEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCC
Q 038439 68 ASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAG 147 (179)
Q Consensus 68 ~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (179)
+.+-. +.+.|=-+.....+...+.|.+-|-+++|++....+++|++|-..++||-.. +++..-.. |
T Consensus 161 l~c~g-~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G-~~Lf~S~~------------~ 226 (737)
T KOG1524|consen 161 VFCQG-GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG-ANLFTSAA------------E 226 (737)
T ss_pred EEecC-CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccC-cccccCCh------------h
Confidence 44332 3455555555556677889999999999999999999999999999999764 33322111 2
Q ss_pred cceEEEEEEccCCCeEEEEeC
Q 038439 148 SYFISAVCWKSDSPTMLTANS 168 (179)
Q Consensus 148 ~~~i~~~~~~~~~~~l~~~~~ 168 (179)
..+|++++|+|+ ..++.++.
T Consensus 227 ey~ITSva~npd-~~~~v~S~ 246 (737)
T KOG1524|consen 227 EYAITSVAFNPE-KDYLLWSY 246 (737)
T ss_pred ccceeeeeeccc-cceeeeee
Confidence 778999999999 55666654
No 207
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=3.2e-13 Score=97.89 Aligned_cols=161 Identities=12% Similarity=0.117 Sum_probs=108.3
Q ss_pred ccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe-------------CCCcee-eecccCceeEEEEeeC-CeEE
Q 038439 4 GKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY-------------QSTAPC-VHGHKKAVSYVKFLSN-DELA 68 (179)
Q Consensus 4 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-------------~~~~~~-~~~~~~~i~~~~~~~~-~~l~ 68 (179)
..|.++|...........+...+.+.+|+|+|+.++.+. ..++.. +..+.+.+....|+|+ ..++
T Consensus 182 ~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la 261 (435)
T PRK05137 182 KRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVV 261 (435)
T ss_pred eEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEE
Confidence 478888886665554456778999999999998776665 122222 3345556678899999 6554
Q ss_pred -EecCCCc--EEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEecc-C--CcEEEEEcCCCccccccccCCCCCCCC
Q 038439 69 -SASTDST--LRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSE-S--NEVYVYHKEISKPVTWHRFSSPDMDDT 142 (179)
Q Consensus 69 -~~~~d~~--v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-d--~~v~vwd~~~~~~~~~~~~~~~~~~~~ 142 (179)
+.+.++. |.+||+.+++. ..+..+........|+|||+.++..+. + ..|+++|+.+++.... ...
T Consensus 262 ~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~l-t~~------- 332 (435)
T PRK05137 262 MSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRI-SFG------- 332 (435)
T ss_pred EEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEe-ecC-------
Confidence 5555554 77778887654 455555556677899999998876653 3 3688888876544322 111
Q ss_pred cccCCcceEEEEEEccCCCeEEEEeCC---CcEEEEeec
Q 038439 143 DEDAGSYFISAVCWKSDSPTMLTANSQ---GTIKVLVLA 178 (179)
Q Consensus 143 ~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~iwd~~ 178 (179)
...+....|+|+|+.|+....+ ..|.+||+.
T Consensus 333 -----~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~ 366 (435)
T PRK05137 333 -----GGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPD 366 (435)
T ss_pred -----CCcccCeEECCCCCEEEEEEcCCCceEEEEEECC
Confidence 2345667899999999876653 357777753
No 208
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=1e-14 Score=103.43 Aligned_cols=129 Identities=18% Similarity=0.245 Sum_probs=101.2
Q ss_pred eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCcceeeec-CCCCCeEEEEEeeC--CCEEEEeccCCcEEEEEcC
Q 038439 49 VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTFR-GHMNEKNFVGLTVN--SEYIACGSESNEVYVYHKE 124 (179)
Q Consensus 49 ~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~--~~~~~~~~~d~~v~vwd~~ 124 (179)
+.+|++-|+++.|+.+ .+|++||.|-.+.|||.-..++++.+. +|...|.++.|-|. .+.+++|..|..|+++|+.
T Consensus 46 L~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~ 125 (758)
T KOG1310|consen 46 LTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLD 125 (758)
T ss_pred hccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecc
Confidence 8899999999999999 999999999999999998888887764 78999999999994 6778999999999999998
Q ss_pred CCccccccccCCCCCCCCcccCCcceEEEEEEccCC-CeEEEEeCCCcEEEEeecC
Q 038439 125 ISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDS-PTMLTANSQGTIKVLVLAA 179 (179)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~ 179 (179)
..+.-.. ... ..........|...|..++-.|++ +.+.+++.||+|+-||++.
T Consensus 126 ~~~~~~~-d~~-~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiRE 179 (758)
T KOG1310|consen 126 SSKEGGM-DHG-MEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIRE 179 (758)
T ss_pred ccccccc-ccC-ccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccC
Confidence 5322100 000 000000011226678888888988 7899999999999999874
No 209
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=3e-14 Score=97.56 Aligned_cols=121 Identities=17% Similarity=0.198 Sum_probs=94.7
Q ss_pred eEEEEeeC-CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccC
Q 038439 57 SYVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFS 135 (179)
Q Consensus 57 ~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~ 135 (179)
.+++|+.+ ..+++++.||++|+|+..+-..+.....|...|.++.|+|||++|++-+.| ..+||+.+++..+......
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 67899999 999999999999999987777777777889999999999999999999999 8999999988544433311
Q ss_pred CC------------C---------------C---------------CCCcccCCcceEEEEEEccCCCeEEEEeCCCcEE
Q 038439 136 SP------------D---------------M---------------DDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIK 173 (179)
Q Consensus 136 ~~------------~---------------~---------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 173 (179)
.. . . ...........|++++.+++|++++.|+.||.|-
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa 306 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA 306 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence 00 0 0 0000000023688999999999999999999999
Q ss_pred EEeec
Q 038439 174 VLVLA 178 (179)
Q Consensus 174 iwd~~ 178 (179)
|++..
T Consensus 307 i~~~~ 311 (398)
T KOG0771|consen 307 IYDAK 311 (398)
T ss_pred EEEec
Confidence 99864
No 210
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=1e-13 Score=89.42 Aligned_cols=117 Identities=18% Similarity=0.243 Sum_probs=87.5
Q ss_pred eecccCceeEEEEeeCCeEEEecCCCcEEEEecCCCcc------eeeecC-------CCCCeEEEEEeeCCCEEEEeccC
Q 038439 49 VHGHKKAVSYVKFLSNDELASASTDSTLRLWDVKENLP------VRTFRG-------HMNEKNFVGLTVNSEYIACGSES 115 (179)
Q Consensus 49 ~~~~~~~i~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~------~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~d 115 (179)
.++|.++|..++|. +.+|++++ ||.|+=|..+.... +...+. .-..|+++...|..+-++.++.|
T Consensus 58 eqahdgpiy~~~f~-d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD 135 (325)
T KOG0649|consen 58 EQAHDGPIYYLAFH-DDFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGD 135 (325)
T ss_pred ccccCCCeeeeeee-hhheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCC
Confidence 68999999999998 45666666 59999887654211 111111 22468889999987777777789
Q ss_pred CcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439 116 NEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA 179 (179)
Q Consensus 116 ~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 179 (179)
+.++-||+++|+....++ +| ...+.++.--.....+++|+.||++++||+++
T Consensus 136 ~~~y~~dlE~G~i~r~~r-----------GH-tDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt 187 (325)
T KOG0649|consen 136 GVIYQVDLEDGRIQREYR-----------GH-TDYVHSVVGRNANGQILSGAEDGTVRVWDTKT 187 (325)
T ss_pred eEEEEEEecCCEEEEEEc-----------CC-cceeeeeeecccCcceeecCCCccEEEEeccc
Confidence 999999999998776654 22 77899988855455688999999999999875
No 211
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=6.5e-13 Score=96.05 Aligned_cols=161 Identities=12% Similarity=0.096 Sum_probs=101.4
Q ss_pred ccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe-C------------CCcee-eecccCceeEEEEeeC-CeEE
Q 038439 4 GKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY-Q------------STAPC-VHGHKKAVSYVKFLSN-DELA 68 (179)
Q Consensus 4 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~------------~~~~~-~~~~~~~i~~~~~~~~-~~l~ 68 (179)
..|.++|...........+...+.+.+|+|+|+.++.+. . .++.. +....+.+....|+|+ +.++
T Consensus 176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la 255 (427)
T PRK02889 176 YQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLA 255 (427)
T ss_pred cEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEE
Confidence 357777765444444445778899999999997776665 1 11111 2223344567899999 6665
Q ss_pred -EecCCCcEEEEe--cCCCcceeeecCCCCCeEEEEEeeCCCEEEEecc-CCcEEEEEc--CCCccccccccCCCCCCCC
Q 038439 69 -SASTDSTLRLWD--VKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSE-SNEVYVYHK--EISKPVTWHRFSSPDMDDT 142 (179)
Q Consensus 69 -~~~~d~~v~iwd--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-d~~v~vwd~--~~~~~~~~~~~~~~~~~~~ 142 (179)
+.+.++...+|. +..+. ...+..+........|+|||+.++..+. ++...+|.+ .+++.. .....
T Consensus 256 ~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~-~lt~~------- 326 (427)
T PRK02889 256 VALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ-RVTFT------- 326 (427)
T ss_pred EEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE-EEecC-------
Confidence 567787766665 44443 4555555555667889999998775553 456666655 343322 11111
Q ss_pred cccCCcceEEEEEEccCCCeEEEEeCCC---cEEEEeec
Q 038439 143 DEDAGSYFISAVCWKSDSPTMLTANSQG---TIKVLVLA 178 (179)
Q Consensus 143 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~iwd~~ 178 (179)
........|+|+|++|+..+.++ .|.+||+.
T Consensus 327 -----g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~ 360 (427)
T PRK02889 327 -----GSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLA 360 (427)
T ss_pred -----CCCcCceEECCCCCEEEEEEccCCcEEEEEEECC
Confidence 22234578999999998777654 58999875
No 212
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.57 E-value=1.8e-13 Score=102.96 Aligned_cols=161 Identities=16% Similarity=0.154 Sum_probs=124.9
Q ss_pred CccEEEEEcCCceeEEeecCCCce-----eEEEEcCCCCeEEEEe------------CCCcee-eecccCceeEEEEeeC
Q 038439 3 YGKVKVWCTRQEASVLNIDMKANI-----CCVKYNPGSSNYIAKY------------QSTAPC-VHGHKKAVSYVKFLSN 64 (179)
Q Consensus 3 d~~i~vwd~~~~~~~~~~~~~~~v-----~~~~~~~~~~~~~~~~------------~~~~~~-~~~~~~~i~~~~~~~~ 64 (179)
++.+-+||...+.....+.+.+.+ .-+.++++. ..+++| ....++ +.+|.+.|..+.|+.+
T Consensus 108 ~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~-~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~d 186 (967)
T KOG0974|consen 108 RNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEE-LYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLD 186 (967)
T ss_pred CceEEEEecccCceehhcCCCceEEEEeEEEEeccCcE-EEEEeccccccEEEEeccccCCcceecccCCceEEEEEccC
Confidence 567778887777776666665542 223345544 445555 344555 8899999999999999
Q ss_pred -CeEEEecCCCcEEEEecCCCccee-eecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCC
Q 038439 65 -DELASASTDSTLRLWDVKENLPVR-TFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDT 142 (179)
Q Consensus 65 -~~l~~~~~d~~v~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~ 142 (179)
+++++.|+|.++|+|++.+.+... ...+|...++.+.|.|+ .+++++.|-+.++|+....+ +..+ .
T Consensus 187 g~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~~-l~~y--~------- 254 (967)
T KOG0974|consen 187 GRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNGTQ-LEVY--D------- 254 (967)
T ss_pred CcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecccce-ehhh--h-------
Confidence 999999999999999999987765 56689999999999998 89999999999999655333 2222 2
Q ss_pred cccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439 143 DEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 143 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
+|-...++.++..++...+++++.|+.+++|++.
T Consensus 255 --~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~ 288 (967)
T KOG0974|consen 255 --EHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLN 288 (967)
T ss_pred --hhhhcceeEEEEcCCceEEEeeccCcchhhhhhh
Confidence 2226679999999999999999999999999874
No 213
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=1.7e-14 Score=102.34 Aligned_cols=153 Identities=13% Similarity=0.160 Sum_probs=111.5
Q ss_pred CCCceeEEEEcCCCCeEEEEe-----------CCCcee---eecccCceeEEEEeeC---CeEEEecCCCcEEEEecCC-
Q 038439 22 MKANICCVKYNPGSSNYIAKY-----------QSTAPC---VHGHKKAVSYVKFLSN---DELASASTDSTLRLWDVKE- 83 (179)
Q Consensus 22 ~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~---~~~~~~~i~~~~~~~~---~~l~~~~~d~~v~iwd~~~- 83 (179)
|.+.|++++|+.+| .++++| -..+++ -.+|.+.|.++.|.|. ..+++|+.|..|+++|+..
T Consensus 49 H~GCVN~LeWn~dG-~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~ 127 (758)
T KOG1310|consen 49 HTGCVNCLEWNADG-ELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSS 127 (758)
T ss_pred ccceecceeecCCC-CEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccc
Confidence 88899999999999 566666 112222 5689999999999997 7889999999999999984
Q ss_pred ---------CcceeeecCCCCCeEEEEEeeCC-CEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEE
Q 038439 84 ---------NLPVRTFRGHMNEKNFVGLTVNS-EYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISA 153 (179)
Q Consensus 84 ---------~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 153 (179)
.+....+.+|...|..++..|++ ..+.++++||+++-+|++.......-. ..+........ .--...+
T Consensus 128 ~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~-~~~~~l~ny~~-~lielk~ 205 (758)
T KOG1310|consen 128 KEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDE-DCPSILVNYNP-QLIELKC 205 (758)
T ss_pred cccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccc-cccHHHHHhch-hhheeee
Confidence 23445567788899999999987 778999999999999998632211100 00000000000 0234678
Q ss_pred EEEccC-CCeEEEEeCCCcEEEEee
Q 038439 154 VCWKSD-SPTMLTANSQGTIKVLVL 177 (179)
Q Consensus 154 ~~~~~~-~~~l~~~~~dg~i~iwd~ 177 (179)
+..+|. ..+|++|+.|...++||.
T Consensus 206 ltisp~rp~~laVGgsdpfarLYD~ 230 (758)
T KOG1310|consen 206 LTISPSRPYYLAVGGSDPFARLYDR 230 (758)
T ss_pred eeecCCCCceEEecCCCchhhhhhh
Confidence 889985 468899999999999994
No 214
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.57 E-value=1.5e-14 Score=104.85 Aligned_cols=135 Identities=20% Similarity=0.291 Sum_probs=109.7
Q ss_pred ceeEEEEcCCCCeEEEEe---------CCCcee--eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCcceeeecC
Q 038439 25 NICCVKYNPGSSNYIAKY---------QSTAPC--VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRG 92 (179)
Q Consensus 25 ~v~~~~~~~~~~~~~~~~---------~~~~~~--~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~ 92 (179)
.|..++|-|||..++.++ +.+..+ +++|+..|.|++|+.+ ..+++|+.|+.|.+|...- +-+..+ .
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl-EG~LkY-S 91 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL-EGILKY-S 91 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccc-cceeee-c
Confidence 789999999998887766 455555 9999999999999999 9999999999999998653 223344 5
Q ss_pred CCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcE
Q 038439 93 HMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTI 172 (179)
Q Consensus 93 ~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 172 (179)
|...|.|+.|+|-...+++++... .-+|........ .++. ...+.+.+|..||++++.|-.+|+|
T Consensus 92 H~D~IQCMsFNP~~h~LasCsLsd-FglWS~~qK~V~-K~ks-------------s~R~~~CsWtnDGqylalG~~nGTI 156 (1081)
T KOG1538|consen 92 HNDAIQCMSFNPITHQLASCSLSD-FGLWSPEQKSVS-KHKS-------------SSRIICCSWTNDGQYLALGMFNGTI 156 (1081)
T ss_pred cCCeeeEeecCchHHHhhhcchhh-ccccChhhhhHH-hhhh-------------heeEEEeeecCCCcEEEEeccCceE
Confidence 888999999999999999887643 457887654333 3332 6689999999999999999999999
Q ss_pred EEEe
Q 038439 173 KVLV 176 (179)
Q Consensus 173 ~iwd 176 (179)
.+-+
T Consensus 157 siRN 160 (1081)
T KOG1538|consen 157 SIRN 160 (1081)
T ss_pred Eeec
Confidence 8754
No 215
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=1.2e-12 Score=94.62 Aligned_cols=160 Identities=8% Similarity=0.090 Sum_probs=102.4
Q ss_pred CccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe-------------CCCcee-eecccCceeEEEEeeC-CeE
Q 038439 3 YGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY-------------QSTAPC-VHGHKKAVSYVKFLSN-DEL 67 (179)
Q Consensus 3 d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-------------~~~~~~-~~~~~~~i~~~~~~~~-~~l 67 (179)
+..|.+|++.+++..........+...+|+|+|+.++.+. ..++.. +..+...+....|+|+ +.|
T Consensus 222 ~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I 301 (429)
T PRK03629 222 RSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNL 301 (429)
T ss_pred CcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEE
Confidence 3468888988876554444555566799999998777653 111222 3333446678899999 777
Q ss_pred EEecC-CCcEEE--EecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccC---CcEEEEEcCCCccccccccCCCCCCC
Q 038439 68 ASAST-DSTLRL--WDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSES---NEVYVYHKEISKPVTWHRFSSPDMDD 141 (179)
Q Consensus 68 ~~~~~-d~~v~i--wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d---~~v~vwd~~~~~~~~~~~~~~~~~~~ 141 (179)
+..+. ++...+ +|+.+++. ..+...........|+|||++++..+.+ ..|.+||+.+++.... ..
T Consensus 302 ~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~L-t~------- 372 (429)
T PRK03629 302 AYTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVL-TD------- 372 (429)
T ss_pred EEEeCCCCCceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEe-CC-------
Confidence 66654 344444 46665543 3343334445678899999998765543 3588899988764322 11
Q ss_pred CcccCCcceEEEEEEccCCCeEEEEeCCCc---EEEEee
Q 038439 142 TDEDAGSYFISAVCWKSDSPTMLTANSQGT---IKVLVL 177 (179)
Q Consensus 142 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~---i~iwd~ 177 (179)
........|+|||++|+.++.++. +.++++
T Consensus 373 ------~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~ 405 (429)
T PRK03629 373 ------TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVST 405 (429)
T ss_pred ------CCCCCCceECCCCCEEEEEEcCCCceEEEEEEC
Confidence 111235779999999999888764 555554
No 216
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=5.7e-14 Score=96.22 Aligned_cols=120 Identities=15% Similarity=0.195 Sum_probs=103.7
Q ss_pred eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCC------CcceeeecC-CCCCeEEEEEeeCCCEEEEeccCCcEEE
Q 038439 49 VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKE------NLPVRTFRG-HMNEKNFVGLTVNSEYIACGSESNEVYV 120 (179)
Q Consensus 49 ~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~------~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~d~~v~v 120 (179)
+.+|.+.|+++.|+.+ ++|++|+.|..+++|.+.. .+++..... |.+.|.+++|...++++++|..+++|..
T Consensus 52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~ 131 (609)
T KOG4227|consen 52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIK 131 (609)
T ss_pred hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEe
Confidence 7789999999999999 9999999999999999854 345544433 4588999999999999999999999999
Q ss_pred EEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439 121 YHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 121 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
.|+++.+.+..+..... .+.|+.+..+|..+.+++.+.++.|.+||.+
T Consensus 132 HDiEt~qsi~V~~~~~~----------~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~R 179 (609)
T KOG4227|consen 132 HDIETKQSIYVANENNN----------RGDVYHMDQHPTDNTLIVVTRAKLVSFIDNR 179 (609)
T ss_pred eecccceeeeeecccCc----------ccceeecccCCCCceEEEEecCceEEEEecc
Confidence 99999888766654322 6689999999999999999999999999986
No 217
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.55 E-value=5.9e-12 Score=88.34 Aligned_cols=173 Identities=9% Similarity=0.098 Sum_probs=107.9
Q ss_pred CCccEEEEEcCC-ce--eEEeecCCCceeEEEEcCCCCeEEEEeCCCc---------------ee-eecccCceeEEEEe
Q 038439 2 AYGKVKVWCTRQ-EA--SVLNIDMKANICCVKYNPGSSNYIAKYQSTA---------------PC-VHGHKKAVSYVKFL 62 (179)
Q Consensus 2 ~d~~i~vwd~~~-~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~---------------~~-~~~~~~~i~~~~~~ 62 (179)
.++.|.+|++.. ++ .+...........++|+|+++.++++..... .+ ...+......+.++
T Consensus 55 ~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 134 (330)
T PRK11028 55 PEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANID 134 (330)
T ss_pred CCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeC
Confidence 367888999863 33 2333344556789999999977777651111 11 11122335677899
Q ss_pred eC-CeEE-EecCCCcEEEEecCCCcceee-----ec-CCCCCeEEEEEeeCCCEEEEecc-CCcEEEEEcCC--Cccccc
Q 038439 63 SN-DELA-SASTDSTLRLWDVKENLPVRT-----FR-GHMNEKNFVGLTVNSEYIACGSE-SNEVYVYHKEI--SKPVTW 131 (179)
Q Consensus 63 ~~-~~l~-~~~~d~~v~iwd~~~~~~~~~-----~~-~~~~~v~~~~~~~~~~~~~~~~~-d~~v~vwd~~~--~~~~~~ 131 (179)
|+ ++++ +...++.|.+||+.+...+.. .. ........+.|+|+|++++++.. ++.|.+||+.. ++....
T Consensus 135 p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~ 214 (330)
T PRK11028 135 PDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECV 214 (330)
T ss_pred CCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEE
Confidence 99 6665 455679999999976332211 11 12334678999999999988776 89999999974 222111
Q ss_pred cccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeC-CCcEEEEeec
Q 038439 132 HRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANS-QGTIKVLVLA 178 (179)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~ 178 (179)
......... ..+......+.++|++++++++.. ++.|.+|+++
T Consensus 215 ~~~~~~p~~----~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~ 258 (330)
T PRK11028 215 QTLDMMPAD----FSDTRWAADIHITPDGRHLYACDRTASLISVFSVS 258 (330)
T ss_pred EEEecCCCc----CCCCccceeEEECCCCCEEEEecCCCCeEEEEEEe
Confidence 111110000 000223446889999999999865 7899999874
No 218
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=2e-12 Score=93.78 Aligned_cols=161 Identities=9% Similarity=0.096 Sum_probs=105.4
Q ss_pred CccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe-------------CCCcee-eecccCceeEEEEeeC-CeE
Q 038439 3 YGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY-------------QSTAPC-VHGHKKAVSYVKFLSN-DEL 67 (179)
Q Consensus 3 d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-------------~~~~~~-~~~~~~~i~~~~~~~~-~~l 67 (179)
+..|.+||+.+++........+.+...+|+|+|+.++.+. ..++.. +..+........|+|+ ..+
T Consensus 225 ~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i 304 (435)
T PRK05137 225 RPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQI 304 (435)
T ss_pred CCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEE
Confidence 4679999998887655445667788999999998776554 111122 3444555667899999 767
Q ss_pred EEecC-CC--cEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccC---CcEEEEEcCCCccccccccCCCCCCC
Q 038439 68 ASAST-DS--TLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSES---NEVYVYHKEISKPVTWHRFSSPDMDD 141 (179)
Q Consensus 68 ~~~~~-d~--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d---~~v~vwd~~~~~~~~~~~~~~~~~~~ 141 (179)
+..+. ++ .|.++|+..++. +.+......+....|+|+|++|+....+ ..|.+||+.++.. ..+..
T Consensus 305 ~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~------- 375 (435)
T PRK05137 305 VFESDRSGSPQLYVMNADGSNP-RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTS------- 375 (435)
T ss_pred EEEECCCCCCeEEEEECCCCCe-EEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccC-------
Confidence 66553 33 577888776543 3443334456678899999998776543 3588888765443 22211
Q ss_pred CcccCCcceEEEEEEccCCCeEEEEeCC------CcEEEEeec
Q 038439 142 TDEDAGSYFISAVCWKSDSPTMLTANSQ------GTIKVLVLA 178 (179)
Q Consensus 142 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~i~iwd~~ 178 (179)
...+..+.|+|||+.|+..+.+ ..+.++|+.
T Consensus 376 ------~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~ 412 (435)
T PRK05137 376 ------GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLT 412 (435)
T ss_pred ------CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECC
Confidence 2235668899999988775543 246666653
No 219
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.54 E-value=2.2e-13 Score=104.37 Aligned_cols=130 Identities=16% Similarity=0.179 Sum_probs=93.9
Q ss_pred eecccCceeEEEEeeC--CeEEEecCCCcEEEEecCCC-------cceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEE
Q 038439 49 VHGHKKAVSYVKFLSN--DELASASTDSTLRLWDVKEN-------LPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVY 119 (179)
Q Consensus 49 ~~~~~~~i~~~~~~~~--~~l~~~~~d~~v~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~ 119 (179)
+..|...+..++.++. .+|++||.||+|++||.++- +...++....+.+..+.+.+.+..+|+++.||.|+
T Consensus 1044 L~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~ 1123 (1431)
T KOG1240|consen 1044 LHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVR 1123 (1431)
T ss_pred hhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEE
Confidence 7778888888888777 89999999999999998752 22234443467788999999999999999999999
Q ss_pred EEEcCCCc--ccc---ccccC------------------CC--------------------CCCCCcccCCcceEEEEEE
Q 038439 120 VYHKEISK--PVT---WHRFS------------------SP--------------------DMDDTDEDAGSYFISAVCW 156 (179)
Q Consensus 120 vwd~~~~~--~~~---~~~~~------------------~~--------------------~~~~~~~~~~~~~i~~~~~ 156 (179)
+.++.-.. ... ..... .+ ..-........+.|++++.
T Consensus 1124 ~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~i 1203 (1431)
T KOG1240|consen 1124 VLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVI 1203 (1431)
T ss_pred EEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEe
Confidence 99876521 000 00000 00 0000000111457999999
Q ss_pred ccCCCeEEEEeCCCcEEEEeec
Q 038439 157 KSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 157 ~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
+|.+++++.|+..|.+.+||++
T Consensus 1204 dp~~~WlviGts~G~l~lWDLR 1225 (1431)
T KOG1240|consen 1204 DPWCNWLVIGTSRGQLVLWDLR 1225 (1431)
T ss_pred cCCceEEEEecCCceEEEEEee
Confidence 9999999999999999999986
No 220
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.53 E-value=2.7e-12 Score=91.56 Aligned_cols=162 Identities=12% Similarity=0.157 Sum_probs=123.3
Q ss_pred CCccEEEEEcCCceeEEeec----CCCceeEEEEc------C-------------CCCeEEEEe-----------CCCce
Q 038439 2 AYGKVKVWCTRQEASVLNID----MKANICCVKYN------P-------------GSSNYIAKY-----------QSTAP 47 (179)
Q Consensus 2 ~d~~i~vwd~~~~~~~~~~~----~~~~v~~~~~~------~-------------~~~~~~~~~-----------~~~~~ 47 (179)
.||.+++|++.+++....+. -.+..++..|. | .+...++.| ..++.
T Consensus 13 ~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys~~~g~i 92 (541)
T KOG4547|consen 13 GDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLYSVAGGEI 92 (541)
T ss_pred CCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEEEecCCeE
Confidence 68999999999998877774 23445555553 2 122234444 11221
Q ss_pred e----eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEE
Q 038439 48 C----VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYH 122 (179)
Q Consensus 48 ~----~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd 122 (179)
. -.+|.++|.++.++.+ +.|.+++.|+.+..|+....+.++..++....+.+++.+|||..+++++ ++|++||
T Consensus 93 t~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~ 170 (541)
T KOG4547|consen 93 TAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLD 170 (541)
T ss_pred EEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEE
Confidence 1 3578899999999988 9999999999999999999999999998888999999999999998887 6899999
Q ss_pred cCCCccccccccCCCCCCCCcccCCcceEEEEEEccC-----CCeEEEEeC-CCcEEEEee
Q 038439 123 KEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSD-----SPTMLTANS-QGTIKVLVL 177 (179)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~l~~~~~-dg~i~iwd~ 177 (179)
+++++.+..+. + |.++|+++.|-.+ |.+++++.. +..+.+|-+
T Consensus 171 ~~~kevv~~ft-----------g-h~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v 219 (541)
T KOG4547|consen 171 IETKEVVITFT-----------G-HGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVV 219 (541)
T ss_pred ccCceEEEEec-----------C-CCcceEEEEEEEeccccccceeeeccccccceeEEEE
Confidence 99999887754 2 2889999999776 666665443 445666644
No 221
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.53 E-value=4.1e-12 Score=91.80 Aligned_cols=161 Identities=14% Similarity=0.144 Sum_probs=105.6
Q ss_pred ccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe-------------CCCcee-eecccCceeEEEEeeC-CeEE
Q 038439 4 GKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY-------------QSTAPC-VHGHKKAVSYVKFLSN-DELA 68 (179)
Q Consensus 4 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-------------~~~~~~-~~~~~~~i~~~~~~~~-~~l~ 68 (179)
..|.++|....+......+...+.+.+|+|+|+.++.+. .+++.. +..+...+.+++|+|+ ..|+
T Consensus 170 ~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~ 249 (417)
T TIGR02800 170 YELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLA 249 (417)
T ss_pred ceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEE
Confidence 357788876555544456677899999999997766554 111111 2334445667899999 6554
Q ss_pred -EecCCC--cEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEecc-CC--cEEEEEcCCCccccccccCCCCCCCC
Q 038439 69 -SASTDS--TLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSE-SN--EVYVYHKEISKPVTWHRFSSPDMDDT 142 (179)
Q Consensus 69 -~~~~d~--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-d~--~v~vwd~~~~~~~~~~~~~~~~~~~~ 142 (179)
+.+.++ .|.+||+.+++. ..+..+........|+|+|+.|+..+. .+ .|+++|+.+++... +...
T Consensus 250 ~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~-l~~~------- 320 (417)
T TIGR02800 250 VSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRR-LTFR------- 320 (417)
T ss_pred EEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecC-------
Confidence 445444 588889887653 344444444556789999998876544 33 57788887665322 1111
Q ss_pred cccCCcceEEEEEEccCCCeEEEEeCCC---cEEEEeec
Q 038439 143 DEDAGSYFISAVCWKSDSPTMLTANSQG---TIKVLVLA 178 (179)
Q Consensus 143 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~iwd~~ 178 (179)
......+.|+|++++++.++.++ .|.+||+.
T Consensus 321 -----~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~ 354 (417)
T TIGR02800 321 -----GGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLD 354 (417)
T ss_pred -----CCCccCeEECCCCCEEEEEEccCCceEEEEEeCC
Confidence 33456788999999999888775 78888865
No 222
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=4.5e-12 Score=91.91 Aligned_cols=159 Identities=9% Similarity=0.028 Sum_probs=100.4
Q ss_pred ccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe-CC------------Ccee-eecccCceeEEEEeeC-CeEE
Q 038439 4 GKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY-QS------------TAPC-VHGHKKAVSYVKFLSN-DELA 68 (179)
Q Consensus 4 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~------------~~~~-~~~~~~~i~~~~~~~~-~~l~ 68 (179)
..|.+||+.+++........+...+.+|+|+|+.++.+. .. ++.. +..+........|+|+ ..++
T Consensus 228 ~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~ 307 (433)
T PRK04922 228 SAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIY 307 (433)
T ss_pred cEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEE
Confidence 468999998877654444555566899999998776543 11 1111 3334344567899999 7776
Q ss_pred Eec-CCCc--EEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCC---cEEEEEcCCCccccccccCCCCCCCC
Q 038439 69 SAS-TDST--LRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESN---EVYVYHKEISKPVTWHRFSSPDMDDT 142 (179)
Q Consensus 69 ~~~-~d~~--v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~---~v~vwd~~~~~~~~~~~~~~~~~~~~ 142 (179)
..+ .++. |.++|+.+++.. .+..........+|+|+|++|+..+.++ .|.+||+.+++... +..
T Consensus 308 f~sd~~g~~~iy~~dl~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~-Lt~-------- 377 (433)
T PRK04922 308 FTSDRGGRPQIYRVAASGGSAE-RLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRT-LTP-------- 377 (433)
T ss_pred EEECCCCCceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEE-CCC--------
Confidence 655 3444 666677665533 3322233345689999999988664432 59999998876542 221
Q ss_pred cccCCcceEEEEEEccCCCeEEEEeCC---CcEEEEee
Q 038439 143 DEDAGSYFISAVCWKSDSPTMLTANSQ---GTIKVLVL 177 (179)
Q Consensus 143 ~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~iwd~ 177 (179)
........|+|||++++..+.+ +.|.++++
T Consensus 378 -----~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~ 410 (433)
T PRK04922 378 -----GSLDESPSFAPNGSMVLYATREGGRGVLAAVST 410 (433)
T ss_pred -----CCCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 1123456899999988776653 34666665
No 223
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.51 E-value=1.5e-12 Score=87.77 Aligned_cols=78 Identities=17% Similarity=0.360 Sum_probs=67.1
Q ss_pred eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCcc-eeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCC
Q 038439 49 VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLP-VRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEIS 126 (179)
Q Consensus 49 ~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~ 126 (179)
+.+|.+.+.++.|.|. +.+++|..|..+.+||+--++- ...+.+|...|..+...+.-+.+++++.||.|.+||....
T Consensus 193 ~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 193 FNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred EcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence 7789999999999999 9999999999999999875433 3455678888988888888889999999999999998643
No 224
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=1e-12 Score=90.20 Aligned_cols=147 Identities=10% Similarity=0.126 Sum_probs=115.4
Q ss_pred cCCCceeEEEEcCCCCeEEEEe-----------------CCCcee-eec--ccCceeEEEEeeC-CeEEEecCCCcEEEE
Q 038439 21 DMKANICCVKYNPGSSNYIAKY-----------------QSTAPC-VHG--HKKAVSYVKFLSN-DELASASTDSTLRLW 79 (179)
Q Consensus 21 ~~~~~v~~~~~~~~~~~~~~~~-----------------~~~~~~-~~~--~~~~i~~~~~~~~-~~l~~~~~d~~v~iw 79 (179)
.|.+.|.++.|+.++ ++++.| ++.+|+ +.+ |...|.|++|... .++++|..+++|.+.
T Consensus 54 ~H~GCiNAlqFS~N~-~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~H 132 (609)
T KOG4227|consen 54 EHTGCINALQFSHND-RFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKH 132 (609)
T ss_pred hhccccceeeeccCC-eEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEee
Confidence 377889999999998 555555 455777 443 5678999999988 899999999999999
Q ss_pred ecCCCcceeeecC--CCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCc-cccccccCCCCCCCCcccCCcceEEEEEE
Q 038439 80 DVKENLPVRTFRG--HMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISK-PVTWHRFSSPDMDDTDEDAGSYFISAVCW 156 (179)
Q Consensus 80 d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 156 (179)
|+.+.+.+..+.. ..+.|+.+..+|-.+.|++.+.++.|.+||.+..+ +...+.+... ......+-|
T Consensus 133 DiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~----------~~~F~t~~F 202 (609)
T KOG4227|consen 133 DIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANS----------GKNFYTAEF 202 (609)
T ss_pred ecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCC----------Cccceeeee
Confidence 9999877766542 24589999999998899999999999999999765 3333322221 456788899
Q ss_pred ccC-CCeEEEEeCCCcEEEEeec
Q 038439 157 KSD-SPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 157 ~~~-~~~l~~~~~dg~i~iwd~~ 178 (179)
+|- ..+|++.+..+-+.+||.+
T Consensus 203 ~P~~P~Li~~~~~~~G~~~~D~R 225 (609)
T KOG4227|consen 203 HPETPALILVNSETGGPNVFDRR 225 (609)
T ss_pred cCCCceeEEeccccCCCCceeec
Confidence 994 4677888888889999975
No 225
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.50 E-value=1.7e-14 Score=106.58 Aligned_cols=114 Identities=19% Similarity=0.349 Sum_probs=104.4
Q ss_pred eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCc
Q 038439 49 VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISK 127 (179)
Q Consensus 49 ~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~ 127 (179)
+.+|...|.|+.|... .++++|+.|..++||...++.++..+.+|.+.++.++.+.++.++++++.|..|++|.+..+.
T Consensus 186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~ 265 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGA 265 (1113)
T ss_pred HHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCc
Confidence 7789999999999888 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439 128 PVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
++..+. +| .+.|++++|+|-. +.+.||++++||.+
T Consensus 266 pvsvLr-----------gh-tgavtaiafsP~~----sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 266 PVSVLR-----------GH-TGAVTAIAFSPRA----SSSDDGTCRIWDAR 300 (1113)
T ss_pred hHHHHh-----------cc-ccceeeeccCccc----cCCCCCceEecccc
Confidence 987754 22 8899999999943 78889999999965
No 226
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=6.2e-12 Score=91.00 Aligned_cols=152 Identities=9% Similarity=0.058 Sum_probs=96.7
Q ss_pred ccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe-CCC------------cee-eecccCceeEEEEeeC-CeEE
Q 038439 4 GKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY-QST------------APC-VHGHKKAVSYVKFLSN-DELA 68 (179)
Q Consensus 4 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~------------~~~-~~~~~~~i~~~~~~~~-~~l~ 68 (179)
..|.+||+.+++........+.+.+.+|+|+|+.++.+. ..+ ... +..+........|+|+ ..++
T Consensus 220 ~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~ 299 (427)
T PRK02889 220 PVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIY 299 (427)
T ss_pred cEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEE
Confidence 458999998887655444556677899999998776544 111 111 3334444567889999 6666
Q ss_pred EecC-CCcEEEEec--CCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCC---cEEEEEcCCCccccccccCCCCCCCC
Q 038439 69 SAST-DSTLRLWDV--KENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESN---EVYVYHKEISKPVTWHRFSSPDMDDT 142 (179)
Q Consensus 69 ~~~~-d~~v~iwd~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~---~v~vwd~~~~~~~~~~~~~~~~~~~~ 142 (179)
..+. ++...+|.+ ..++. ..+..........+|+|+|++++..+.++ .|.+||+.+++......
T Consensus 300 f~s~~~g~~~Iy~~~~~~g~~-~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~--------- 369 (427)
T PRK02889 300 FTSDRGGAPQIYRMPASGGAA-QRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTD--------- 369 (427)
T ss_pred EEecCCCCcEEEEEECCCCce-EEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccC---------
Confidence 5553 456666654 44432 22222222334678999999988766543 59999998876443211
Q ss_pred cccCCcceEEEEEEccCCCeEEEEeCCC
Q 038439 143 DEDAGSYFISAVCWKSDSPTMLTANSQG 170 (179)
Q Consensus 143 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg 170 (179)
........|+|||+.|+..+.++
T Consensus 370 -----~~~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 370 -----TTRDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred -----CCCccCceECCCCCEEEEEEecC
Confidence 11235678999999888777544
No 227
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.48 E-value=3.4e-13 Score=90.47 Aligned_cols=153 Identities=15% Similarity=0.182 Sum_probs=107.3
Q ss_pred CCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe-----------CCCcee-eecccCceeEEEEeeC-CeE
Q 038439 2 AYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY-----------QSTAPC-VHGHKKAVSYVKFLSN-DEL 67 (179)
Q Consensus 2 ~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~-~~~~~~~i~~~~~~~~-~~l 67 (179)
.|+.|.+|++...+.-..++ ...++.+++|||+|+.++.+. .+.+.. ++--+..+..++|+|+ ++.
T Consensus 69 k~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ 148 (447)
T KOG4497|consen 69 KDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFC 148 (447)
T ss_pred ccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCcee
Confidence 47899999999888888886 667899999999998888887 333333 3333455688999999 665
Q ss_pred EEecCCC---cEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcc
Q 038439 68 ASASTDS---TLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDE 144 (179)
Q Consensus 68 ~~~~~d~---~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 144 (179)
+.++.-. .+.+.....-..+..++-.+...+.+.|+|||..++ +||---.-.+..++.
T Consensus 149 ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~la---------Vwd~~Leykv~aYe~---------- 209 (447)
T KOG4497|consen 149 AILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLA---------VWDNVLEYKVYAYER---------- 209 (447)
T ss_pred eeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEE---------Eecchhhheeeeeee----------
Confidence 5555432 233332233345566666677788899999998776 455322112212222
Q ss_pred cCCcceEEEEEEccCCCeEEEEeCCCcEEEEe
Q 038439 145 DAGSYFISAVCWKSDSPTMLTANSQGTIKVLV 176 (179)
Q Consensus 145 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd 176 (179)
+..+..+.|+|.+++|+.|+.|+.++|.+
T Consensus 210 ---~lG~k~v~wsP~~qflavGsyD~~lrvln 238 (447)
T KOG4497|consen 210 ---GLGLKFVEWSPCNQFLAVGSYDQMLRVLN 238 (447)
T ss_pred ---ccceeEEEeccccceEEeeccchhhhhhc
Confidence 45788999999999999999999998854
No 228
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.47 E-value=2.2e-12 Score=87.49 Aligned_cols=140 Identities=14% Similarity=0.214 Sum_probs=99.5
Q ss_pred CceeEEEEcCCCCeEEEEe----------CCCcee-e-ecccCceeEEEEeeC--CeEEEecCCCcEEEEecCCC----c
Q 038439 24 ANICCVKYNPGSSNYIAKY----------QSTAPC-V-HGHKKAVSYVKFLSN--DELASASTDSTLRLWDVKEN----L 85 (179)
Q Consensus 24 ~~v~~~~~~~~~~~~~~~~----------~~~~~~-~-~~~~~~i~~~~~~~~--~~l~~~~~d~~v~iwd~~~~----~ 85 (179)
..+..++|++.-..+++.+ +...+. + ......|+|++|-|. ..|+.|+..| |++|..... +
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r 177 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANR 177 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCccccccc
Confidence 4578899998542222222 111111 2 234567999999999 6777777654 899986531 1
Q ss_pred ----------ceeeecCCCCCeEEEEEeeCCCEEEEecc-CCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEE
Q 038439 86 ----------PVRTFRGHMNEKNFVGLTVNSEYIACGSE-SNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAV 154 (179)
Q Consensus 86 ----------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 154 (179)
.+....+| ..|++++|++||..+++++. +..|.|||+.++..+...... .+.++-+
T Consensus 178 ~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~g------------lgg~slL 244 (445)
T KOG2139|consen 178 NIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKG------------LGGFSLL 244 (445)
T ss_pred ccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccC------------CCceeeE
Confidence 11122233 57999999999999998875 678999999998876554332 5578889
Q ss_pred EEccCCCeEEEEeCCCcEEEEee
Q 038439 155 CWKSDSPTMLTANSQGTIKVLVL 177 (179)
Q Consensus 155 ~~~~~~~~l~~~~~dg~i~iwd~ 177 (179)
.|+||+.+|++++-|+..++|+.
T Consensus 245 kwSPdgd~lfaAt~davfrlw~e 267 (445)
T KOG2139|consen 245 KWSPDGDVLFAATCDAVFRLWQE 267 (445)
T ss_pred EEcCCCCEEEEecccceeeeehh
Confidence 99999999999999999999954
No 229
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.47 E-value=8.7e-12 Score=94.80 Aligned_cols=170 Identities=14% Similarity=0.200 Sum_probs=113.5
Q ss_pred CCCccEEEEEc-CC----ceeEEeec--------CCCceeEEEEcCCCCeEEEEeCCC----------cee---eecccC
Q 038439 1 MAYGKVKVWCT-RQ----EASVLNID--------MKANICCVKYNPGSSNYIAKYQST----------APC---VHGHKK 54 (179)
Q Consensus 1 ~~d~~i~vwd~-~~----~~~~~~~~--------~~~~v~~~~~~~~~~~~~~~~~~~----------~~~---~~~~~~ 54 (179)
+.||.|+||+- .. .+.+.... ..+.-.-++|......++++|... ..+ -.+...
T Consensus 1130 s~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t 1209 (1387)
T KOG1517|consen 1130 SSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSST 1209 (1387)
T ss_pred ccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCc
Confidence 57999999973 22 22222221 111125577887776888888211 111 122333
Q ss_pred ceeEEEEeeC--CeEEEecCCCcEEEEecCCCc---ceeeecCCCCC--eEEEEEeeCCC-EEEEeccCCcEEEEEcCCC
Q 038439 55 AVSYVKFLSN--DELASASTDSTLRLWDVKENL---PVRTFRGHMNE--KNFVGLTVNSE-YIACGSESNEVYVYHKEIS 126 (179)
Q Consensus 55 ~i~~~~~~~~--~~l~~~~~d~~v~iwd~~~~~---~~~~~~~~~~~--v~~~~~~~~~~-~~~~~~~d~~v~vwd~~~~ 126 (179)
.++++.-.-. +.++.|..||.|++||.+... .+...+.|... |..+.+.++|- .+++|+.+|.|++||+++.
T Consensus 1210 ~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~ 1289 (1387)
T KOG1517|consen 1210 LVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMS 1289 (1387)
T ss_pred cceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccC
Confidence 4555543322 789999999999999988643 45666777766 88899988754 4999999999999999986
Q ss_pred ccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439 127 KPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
..........+. +. ++..+++..+++...+|+|+. +.|+||++.
T Consensus 1290 ~~e~~~~iv~~~------~y-Gs~lTal~VH~hapiiAsGs~-q~ikIy~~~ 1333 (1387)
T KOG1517|consen 1290 SKETFLTIVAHW------EY-GSALTALTVHEHAPIIASGSA-QLIKIYSLS 1333 (1387)
T ss_pred cccccceeeecc------cc-CccceeeeeccCCCeeeecCc-ceEEEEecC
Confidence 333222222110 00 335899999999999999998 899999974
No 230
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.47 E-value=2.7e-12 Score=87.61 Aligned_cols=131 Identities=11% Similarity=0.149 Sum_probs=104.6
Q ss_pred ccEEEEEcCCceeEEeec----------CCCceeEEEEcCC--CCeEEEEe-----------CCCcee--eecccCceeE
Q 038439 4 GKVKVWCTRQEASVLNID----------MKANICCVKYNPG--SSNYIAKY-----------QSTAPC--VHGHKKAVSY 58 (179)
Q Consensus 4 ~~i~vwd~~~~~~~~~~~----------~~~~v~~~~~~~~--~~~~~~~~-----------~~~~~~--~~~~~~~i~~ 58 (179)
+.++|||++..+++.+-. .+-.++++.|-|. ...++++. ...+|+ +.--+.+|++
T Consensus 173 n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~ 252 (412)
T KOG3881|consen 173 NELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISS 252 (412)
T ss_pred cceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCccee
Confidence 568999999886655432 2334788999876 43444443 334555 5556778999
Q ss_pred EEEeeC-CeEEEecCCCcEEEEecCCCcceee-ecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCcccccccc
Q 038439 59 VKFLSN-DELASASTDSTLRLWDVKENLPVRT-FRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRF 134 (179)
Q Consensus 59 ~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~ 134 (179)
+...|. +++++|..-+.+..||++.++.+.. +++..+.++++..+|...++++++-|++|+|+|+++.+++.....
T Consensus 253 ~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYv 330 (412)
T KOG3881|consen 253 TGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYV 330 (412)
T ss_pred eeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhh
Confidence 999999 9999999999999999999887765 788889999999999999999999999999999999777766555
No 231
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=2.4e-11 Score=88.20 Aligned_cols=160 Identities=11% Similarity=0.099 Sum_probs=102.6
Q ss_pred cEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe-CCCc-ee------------eecccCceeEEEEeeC-CeEE-
Q 038439 5 KVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY-QSTA-PC------------VHGHKKAVSYVKFLSN-DELA- 68 (179)
Q Consensus 5 ~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~-~~------------~~~~~~~i~~~~~~~~-~~l~- 68 (179)
.|.++|...++......+...+.+.+|+|+|+.++.+. +.+. .+ +....+.+....|+|+ ..++
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~ 259 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAF 259 (430)
T ss_pred EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEE
Confidence 47777877665555556778899999999998777665 1111 11 2222333456899999 6665
Q ss_pred EecCCC--cEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEecc-CC--cEEEEEcCCCccccccccCCCCCCCCc
Q 038439 69 SASTDS--TLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSE-SN--EVYVYHKEISKPVTWHRFSSPDMDDTD 143 (179)
Q Consensus 69 ~~~~d~--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-d~--~v~vwd~~~~~~~~~~~~~~~~~~~~~ 143 (179)
+.+.++ .|.++|+.+++. ..+..+........|+|||+.++..+. ++ .|+++|+.+++.... ...
T Consensus 260 ~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~l-t~~-------- 329 (430)
T PRK00178 260 VLSKDGNPEIYVMDLASRQL-SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERV-TFV-------- 329 (430)
T ss_pred EEccCCCceEEEEECCCCCe-EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe-ecC--------
Confidence 454454 588889987654 345445555667889999998765543 33 577778777654322 111
Q ss_pred ccCCcceEEEEEEccCCCeEEEEeCC-C--cEEEEeec
Q 038439 144 EDAGSYFISAVCWKSDSPTMLTANSQ-G--TIKVLVLA 178 (179)
Q Consensus 144 ~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~i~iwd~~ 178 (179)
........|+|+|++|+..+.+ + .|.+||+.
T Consensus 330 ----~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~ 363 (430)
T PRK00178 330 ----GNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQ 363 (430)
T ss_pred ----CCCccceEECCCCCEEEEEEccCCceEEEEEECC
Confidence 1123456899999999877653 3 47777764
No 232
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.46 E-value=4.9e-12 Score=83.62 Aligned_cols=121 Identities=13% Similarity=0.130 Sum_probs=93.1
Q ss_pred eeEEEEcCCCCeEEEEeCC---------Ccee-----eecccCceeEEEEeeC--CeEEEecCCCcEEEEecCC-Cccee
Q 038439 26 ICCVKYNPGSSNYIAKYQS---------TAPC-----VHGHKKAVSYVKFLSN--DELASASTDSTLRLWDVKE-NLPVR 88 (179)
Q Consensus 26 v~~~~~~~~~~~~~~~~~~---------~~~~-----~~~~~~~i~~~~~~~~--~~l~~~~~d~~v~iwd~~~-~~~~~ 88 (179)
..++.|++.+..+++.-.. ...+ .+.|..+++-.+|+.. +.+.+|+.|+.+.-||++. ++.+.
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~ 203 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW 203 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence 5678888888665554311 1111 6778999999999877 7899999999999999993 33333
Q ss_pred e-ecCCCCCeEEEEEee-CCCEEEEeccCCcEEEEEcCC-CccccccccCCCCCCCCcccCCcceEEEEEEccC
Q 038439 89 T-FRGHMNEKNFVGLTV-NSEYIACGSESNEVYVYHKEI-SKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSD 159 (179)
Q Consensus 89 ~-~~~~~~~v~~~~~~~-~~~~~~~~~~d~~v~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 159 (179)
. .+.|...|.++.-+| .+.+|++|+.|..|++||.|+ ++++..... .+.|+.+.++|.
T Consensus 204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v-------------~GGVWRi~~~p~ 264 (339)
T KOG0280|consen 204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKV-------------GGGVWRIKHHPE 264 (339)
T ss_pred ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCcc-------------ccceEEEEecch
Confidence 2 456888899998876 588999999999999999994 777766554 678999999984
No 233
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.46 E-value=2.5e-12 Score=91.91 Aligned_cols=143 Identities=15% Similarity=0.213 Sum_probs=106.3
Q ss_pred CCceeEEEEcCCCCeEEEEe----------CCCcee--eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCcceee
Q 038439 23 KANICCVKYNPGSSNYIAKY----------QSTAPC--VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRT 89 (179)
Q Consensus 23 ~~~v~~~~~~~~~~~~~~~~----------~~~~~~--~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~ 89 (179)
+..-..++++.-...++.+| ..++.+ +.-..+.++++..++. ++|++|+.+|.|..||.+....+.+
T Consensus 133 P~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~ 212 (703)
T KOG2321|consen 133 PKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGT 212 (703)
T ss_pred CcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhhee
Confidence 34456777776555566655 344444 5555688999999999 9999999999999999998766655
Q ss_pred ecC------CCC-----CeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEcc
Q 038439 90 FRG------HMN-----EKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKS 158 (179)
Q Consensus 90 ~~~------~~~-----~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 158 (179)
+.. +.+ .|+++.|+-+|-.+++|..+|.+.+||+++.+++....... ..+|..+.|.+
T Consensus 213 l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~-----------e~pi~~l~~~~ 281 (703)
T KOG2321|consen 213 LDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGY-----------ELPIKKLDWQD 281 (703)
T ss_pred eecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCC-----------ccceeeecccc
Confidence 542 222 48999999999999999999999999999999876544321 56899999977
Q ss_pred C--CCeEEEEeCCCcEEEEee
Q 038439 159 D--SPTMLTANSQGTIKVLVL 177 (179)
Q Consensus 159 ~--~~~l~~~~~dg~i~iwd~ 177 (179)
. ++.+++ .....++|||-
T Consensus 282 ~~~q~~v~S-~Dk~~~kiWd~ 301 (703)
T KOG2321|consen 282 TDQQNKVVS-MDKRILKIWDE 301 (703)
T ss_pred cCCCceEEe-cchHHhhhccc
Confidence 5 344443 44557899984
No 234
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.45 E-value=2.9e-11 Score=87.40 Aligned_cols=152 Identities=9% Similarity=0.038 Sum_probs=99.3
Q ss_pred ccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe-C------------CCcee-eecccCceeEEEEeeC-CeEE
Q 038439 4 GKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY-Q------------STAPC-VHGHKKAVSYVKFLSN-DELA 68 (179)
Q Consensus 4 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~------------~~~~~-~~~~~~~i~~~~~~~~-~~l~ 68 (179)
..|++||+.+++......+...+.+++|+|+++.++.+. . .+... +..+........|+|+ ..|+
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~ 293 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIA 293 (417)
T ss_pred cEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEE
Confidence 478999998886655445666777899999997776654 1 11111 2233333456789999 6666
Q ss_pred EecC-CC--cEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCC---cEEEEEcCCCccccccccCCCCCCCC
Q 038439 69 SAST-DS--TLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESN---EVYVYHKEISKPVTWHRFSSPDMDDT 142 (179)
Q Consensus 69 ~~~~-d~--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~---~v~vwd~~~~~~~~~~~~~~~~~~~~ 142 (179)
..+. .+ .|.++|+.+++. ..+..+........|+|+|++++.+..++ .|.+||+.++.......
T Consensus 294 ~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~--------- 363 (417)
T TIGR02800 294 FTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTD--------- 363 (417)
T ss_pred EEECCCCCceEEEEECCCCCE-EEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccC---------
Confidence 5543 33 577778776653 34443445566789999999988877765 78899988754322111
Q ss_pred cccCCcceEEEEEEccCCCeEEEEeCCC
Q 038439 143 DEDAGSYFISAVCWKSDSPTMLTANSQG 170 (179)
Q Consensus 143 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg 170 (179)
........|+|++++|+..+.++
T Consensus 364 -----~~~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 364 -----TGLDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred -----CCCCCCceECCCCCEEEEEEeCC
Confidence 11123457999999888877654
No 235
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.41 E-value=6.8e-11 Score=86.06 Aligned_cols=160 Identities=13% Similarity=0.097 Sum_probs=98.7
Q ss_pred cEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe-CC------------Ccee-eecccCceeEEEEeeC-CeEE-
Q 038439 5 KVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY-QS------------TAPC-VHGHKKAVSYVKFLSN-DELA- 68 (179)
Q Consensus 5 ~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~------------~~~~-~~~~~~~i~~~~~~~~-~~l~- 68 (179)
.|.++|....+..........+.+..|+|+|+.++.+. .. ++.. +....+......|+|+ ..|+
T Consensus 199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~ 278 (448)
T PRK04792 199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLAL 278 (448)
T ss_pred EEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEE
Confidence 56667766555444456777899999999998777664 11 1111 1112223346789999 6555
Q ss_pred EecCCCc--EEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEecc-CC--cEEEEEcCCCccccccccCCCCCCCCc
Q 038439 69 SASTDST--LRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSE-SN--EVYVYHKEISKPVTWHRFSSPDMDDTD 143 (179)
Q Consensus 69 ~~~~d~~--v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-d~--~v~vwd~~~~~~~~~~~~~~~~~~~~~ 143 (179)
+.+.++. |.++|+.+++. ..+..+.......+|+|||+.++..+. ++ .|.++|+.+++.... ...
T Consensus 279 ~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L-t~~-------- 348 (448)
T PRK04792 279 VLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL-TFE-------- 348 (448)
T ss_pred EEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE-ecC--------
Confidence 4555664 77778877654 444445555677899999998765543 33 466677776654322 111
Q ss_pred ccCCcceEEEEEEccCCCeEEEEeC-CCc--EEEEeec
Q 038439 144 EDAGSYFISAVCWKSDSPTMLTANS-QGT--IKVLVLA 178 (179)
Q Consensus 144 ~~~~~~~i~~~~~~~~~~~l~~~~~-dg~--i~iwd~~ 178 (179)
.......+|+|+|++|+..+. ++. |.++|+.
T Consensus 349 ----g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~ 382 (448)
T PRK04792 349 ----GEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLE 382 (448)
T ss_pred ----CCCCcCeeECCCCCEEEEEEecCCceEEEEEECC
Confidence 112334689999999877655 343 4445543
No 236
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=9.3e-11 Score=84.81 Aligned_cols=161 Identities=12% Similarity=0.136 Sum_probs=98.9
Q ss_pred cEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEeC-C-----------------Ccee-ee-cccCceeEEEEeeC
Q 038439 5 KVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKYQ-S-----------------TAPC-VH-GHKKAVSYVKFLSN 64 (179)
Q Consensus 5 ~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~-----------------~~~~-~~-~~~~~i~~~~~~~~ 64 (179)
.|.+.++.+++........+.....+|+|||+.++.+.. . +++. +. ..........|+|+
T Consensus 212 ~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPD 291 (428)
T PRK01029 212 KIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPD 291 (428)
T ss_pred eEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCC
Confidence 456667766665444445556677899999987776551 1 1111 11 11223456799999
Q ss_pred -CeEEEec-CCCcEEEE--ecCC-CcceeeecCCCCCeEEEEEeeCCCEEEEeccC---CcEEEEEcCCCccccccccCC
Q 038439 65 -DELASAS-TDSTLRLW--DVKE-NLPVRTFRGHMNEKNFVGLTVNSEYIACGSES---NEVYVYHKEISKPVTWHRFSS 136 (179)
Q Consensus 65 -~~l~~~~-~d~~v~iw--d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d---~~v~vwd~~~~~~~~~~~~~~ 136 (179)
..|+..+ .++...+| ++.. +.....+......+....|+|||+.|+....+ ..|.+||+.+++.......
T Consensus 292 G~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~-- 369 (428)
T PRK01029 292 GTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTS-- 369 (428)
T ss_pred CCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCC--
Confidence 6666554 46655555 4432 22334444444556788999999988765443 4689999988865432211
Q ss_pred CCCCCCcccCCcceEEEEEEccCCCeEEEEeC---CCcEEEEeec
Q 038439 137 PDMDDTDEDAGSYFISAVCWKSDSPTMLTANS---QGTIKVLVLA 178 (179)
Q Consensus 137 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~iwd~~ 178 (179)
...+....|+|||+.|+.... ...|.++|+.
T Consensus 370 -----------~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~ 403 (428)
T PRK01029 370 -----------PENKESPSWAIDSLHLVYSAGNSNESELYLISLI 403 (428)
T ss_pred -----------CCCccceEECCCCCEEEEEECCCCCceEEEEECC
Confidence 223566889999998875443 3457777764
No 237
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=1.1e-10 Score=83.18 Aligned_cols=157 Identities=16% Similarity=0.238 Sum_probs=107.7
Q ss_pred ccEEEEEcCCceeEEeec----CCCceeEEEEcCCCCeEEEEe-----CCC------cee----eec--------ccCce
Q 038439 4 GKVKVWCTRQEASVLNID----MKANICCVKYNPGSSNYIAKY-----QST------APC----VHG--------HKKAV 56 (179)
Q Consensus 4 ~~i~vwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~-----~~~------~~~----~~~--------~~~~i 56 (179)
+.|+||.......-..+. ....=..+.|++-|.-+++.. .++ +.+ +.+ ..++|
T Consensus 194 a~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPV 273 (566)
T KOG2315|consen 194 ASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPV 273 (566)
T ss_pred cEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCc
Confidence 457777665322211111 223345688998887776665 110 111 222 36899
Q ss_pred eEEEEeeC-CeEE--EecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEecc---CCcEEEEEcCCCcccc
Q 038439 57 SYVKFLSN-DELA--SASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSE---SNEVYVYHKEISKPVT 130 (179)
Q Consensus 57 ~~~~~~~~-~~l~--~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---d~~v~vwd~~~~~~~~ 130 (179)
.++.|+|+ ..++ .|-+-..+.|||++ +.++..+ ..++=+++-|+|.|++++.++- .|.+.+||+.+.+.+.
T Consensus 274 hdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~ 350 (566)
T KOG2315|consen 274 HDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIA 350 (566)
T ss_pred eEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhcc
Confidence 99999999 5544 45567789999987 5566555 3555678999999999887655 5889999999977776
Q ss_pred ccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeC------CCcEEEEee
Q 038439 131 WHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANS------QGTIKVLVL 177 (179)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------dg~i~iwd~ 177 (179)
... ...-+-+.|+|||+++++++. |+.++||+.
T Consensus 351 ~~~--------------a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy 389 (566)
T KOG2315|consen 351 KFK--------------AANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY 389 (566)
T ss_pred ccc--------------cCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEe
Confidence 655 334566889999999999876 677889975
No 238
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=2.4e-11 Score=86.55 Aligned_cols=127 Identities=13% Similarity=0.231 Sum_probs=95.4
Q ss_pred ccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe-----------CCCceeeecccCceeEEEEeeC-CeEEEec
Q 038439 4 GKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY-----------QSTAPCVHGHKKAVSYVKFLSN-DELASAS 71 (179)
Q Consensus 4 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~ 71 (179)
.++++.+++...+...+...++|.++.|+|++..+.++- ..+.+++.-.+++=+++-|+|. ++++.++
T Consensus 251 q~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~egpRN~~~fnp~g~ii~lAG 330 (566)
T KOG2315|consen 251 QTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFPEGPRNTAFFNPHGNIILLAG 330 (566)
T ss_pred ceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCCCCCccceEECCCCCEEEEee
Confidence 467777777556667777899999999999997776654 3334444445667788999999 7777766
Q ss_pred C---CCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEecc------CCcEEEEEcCCCccccccc
Q 038439 72 T---DSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSE------SNEVYVYHKEISKPVTWHR 133 (179)
Q Consensus 72 ~---d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~------d~~v~vwd~~~~~~~~~~~ 133 (179)
. .|.+-+||+.+.+++..++.... +-..|+|||++|+++.. |+.++||+.. |..+....
T Consensus 331 FGNL~G~mEvwDv~n~K~i~~~~a~~t--t~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt-G~~l~~~~ 398 (566)
T KOG2315|consen 331 FGNLPGDMEVWDVPNRKLIAKFKAANT--TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT-GSLLHEKM 398 (566)
T ss_pred cCCCCCceEEEeccchhhccccccCCc--eEEEEcCCCcEEEEEeccccEEecCCeEEEEec-Cceeehhh
Confidence 5 47899999999888888875443 45889999999998865 6789999985 44444433
No 239
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.39 E-value=9.1e-13 Score=88.84 Aligned_cols=155 Identities=14% Similarity=0.192 Sum_probs=103.8
Q ss_pred CCCceeEEEEcCCCCeEEEEe-------------CCCcee------eecccCceeEEEEeeC--CeEEEecCCCcEEEEe
Q 038439 22 MKANICCVKYNPGSSNYIAKY-------------QSTAPC------VHGHKKAVSYVKFLSN--DELASASTDSTLRLWD 80 (179)
Q Consensus 22 ~~~~v~~~~~~~~~~~~~~~~-------------~~~~~~------~~~~~~~i~~~~~~~~--~~l~~~~~d~~v~iwd 80 (179)
|...|+++.++.|+..++.+- .....+ +..-+..|++..|+|. +.|+..+..|+|++-|
T Consensus 163 HtyhiNSIS~NsD~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcD 242 (433)
T KOG1354|consen 163 HTYHINSISVNSDKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCD 242 (433)
T ss_pred ceeEeeeeeecCccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEee
Confidence 566799999999997777776 111111 2233567899999999 8999999999999999
Q ss_pred cCCCcce----eee------------cCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCC-CccccccccCCCCCCCCc
Q 038439 81 VKENLPV----RTF------------RGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEI-SKPVTWHRFSSPDMDDTD 143 (179)
Q Consensus 81 ~~~~~~~----~~~------------~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~-~~~~~~~~~~~~~~~~~~ 143 (179)
++...+. ..+ .+-.+.|..+.|++.|+|+++-.. -+|++||+.+ .+++..++.........-
T Consensus 243 mR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc 321 (433)
T KOG1354|consen 243 MRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLC 321 (433)
T ss_pred chhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHH
Confidence 9853211 111 112346778999999999987553 5799999954 555555443222100000
Q ss_pred ccCCcce---EEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439 144 EDAGSYF---ISAVCWKSDSPTMLTANSQGTIKVLVL 177 (179)
Q Consensus 144 ~~~~~~~---i~~~~~~~~~~~l~~~~~dg~i~iwd~ 177 (179)
....... -..++|+.++.++++|+..+..++|++
T Consensus 322 ~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~ 358 (433)
T KOG1354|consen 322 SLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNL 358 (433)
T ss_pred HHhhccchhheeEEEEcCCcceEecccccceEEEecC
Confidence 0000112 245789999999999999999999985
No 240
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.39 E-value=1.2e-10 Score=86.72 Aligned_cols=172 Identities=15% Similarity=0.211 Sum_probs=122.1
Q ss_pred ccEEEEEcCCceeEE-----eecCCCceeEEEEcCCCCeEEEEe-CCCcee----------------eecccCceeEEEE
Q 038439 4 GKVKVWCTRQEASVL-----NIDMKANICCVKYNPGSSNYIAKY-QSTAPC----------------VHGHKKAVSYVKF 61 (179)
Q Consensus 4 ~~i~vwd~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~----------------~~~~~~~i~~~~~ 61 (179)
..+.+|+.++..... ..+|.-.+++.++||.+ .++++| ..|+.. +.=|...|.+++|
T Consensus 181 ~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~-~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~f 259 (792)
T KOG1963|consen 181 CKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNE-RYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSF 259 (792)
T ss_pred eeEEEEEecccceeeccchhhhhhcccceeEEecccc-ceEEEeccCCcEEEEeccccccccccceEEEecccccceeEE
Confidence 456788877644111 11366678999999999 566666 333322 3336678999999
Q ss_pred eeC-CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCC
Q 038439 62 LSN-DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMD 140 (179)
Q Consensus 62 ~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~ 140 (179)
+++ .+|++|+..+.+.+|.+.+++. +-+..-.++|..+.++||+.+.+...+|+.|.+....+.+.......-.+...
T Consensus 260 S~~G~~LlSGG~E~VLv~Wq~~T~~k-qfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~ 338 (792)
T KOG1963|consen 260 SSDGAYLLSGGREGVLVLWQLETGKK-QFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTP 338 (792)
T ss_pred ecCCceEeecccceEEEEEeecCCCc-ccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCc
Confidence 999 9999999999999999998873 33334577899999999999999999999999998766544333221111100
Q ss_pred CCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439 141 DTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 141 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
...... ..-.+.++++|.-+.++..+..|.|.+||+-
T Consensus 339 ~~k~~~-~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~ 375 (792)
T KOG1963|consen 339 STKTRP-QSLTTGVSIDPRTNSLVLNGHPGHVQFYDLY 375 (792)
T ss_pred cccccc-cccceeEEEcCCCCceeecCCCceEEEEecc
Confidence 000001 4456788999977888889999999999974
No 241
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.39 E-value=4.9e-13 Score=99.16 Aligned_cols=98 Identities=19% Similarity=0.441 Sum_probs=86.6
Q ss_pred CCCceeEEEEcCCCCeEEEEe-----------CCCcee--eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCcce
Q 038439 22 MKANICCVKYNPGSSNYIAKY-----------QSTAPC--VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPV 87 (179)
Q Consensus 22 ~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~--~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~ 87 (179)
|...|.|+.|...| +.+.+| .+..++ ..+|.+.|+.++.+.. -.++++|.|..|++|-+..+.++
T Consensus 189 H~naVyca~fDrtg-~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pv 267 (1113)
T KOG0644|consen 189 HRNAVYCAIFDRTG-RYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPV 267 (1113)
T ss_pred hhhheeeeeecccc-ceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchH
Confidence 67889999999999 555555 444555 8899999999999888 78899999999999999999999
Q ss_pred eeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcC
Q 038439 88 RTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKE 124 (179)
Q Consensus 88 ~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~ 124 (179)
..+.+|++.|++++|+|-. +.+.||++++||.+
T Consensus 268 svLrghtgavtaiafsP~~----sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 268 SVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDAR 300 (1113)
T ss_pred HHHhccccceeeeccCccc----cCCCCCceEecccc
Confidence 9999999999999999964 67889999999988
No 242
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.39 E-value=5.5e-11 Score=91.66 Aligned_cols=168 Identities=13% Similarity=0.155 Sum_probs=116.3
Q ss_pred CCCccEEEEEcCCc-------eeEEeec-CCCceeEEEEcCCCCeEEEEeCCCcee-------------------eec-c
Q 038439 1 MAYGKVKVWCTRQE-------ASVLNID-MKANICCVKYNPGSSNYIAKYQSTAPC-------------------VHG-H 52 (179)
Q Consensus 1 ~~d~~i~vwd~~~~-------~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~-------------------~~~-~ 52 (179)
|+||+|++|+..+. +...++. ...++.++...+.++.++++++.|... ... .
T Consensus 1068 S~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~ 1147 (1431)
T KOG1240|consen 1068 SDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKK 1147 (1431)
T ss_pred cCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccC
Confidence 68999999998752 2333444 677899999988886666555332222 111 1
Q ss_pred cCceeEE-EEeeC--C-eEEEecCCCcEEEEecCCCcceeeecC--CCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCC
Q 038439 53 KKAVSYV-KFLSN--D-ELASASTDSTLRLWDVKENLPVRTFRG--HMNEKNFVGLTVNSEYIACGSESNEVYVYHKEIS 126 (179)
Q Consensus 53 ~~~i~~~-~~~~~--~-~l~~~~~d~~v~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~ 126 (179)
.+.+..+ +|... . .++.+..-+.|..||+++..-...++. ..+.|++++.+|.+.+++.|+..|.+.+||+|-+
T Consensus 1148 ~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~ 1227 (1431)
T KOG1240|consen 1148 DGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFR 1227 (1431)
T ss_pred CCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecC
Confidence 1223333 33333 3 677888889999999998655544442 3567999999999999999999999999999999
Q ss_pred ccccccccCCCCCCCCcccCCcceEEEEEEccC---CCeEEE-Ee-CCCcEEEEeecC
Q 038439 127 KPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSD---SPTMLT-AN-SQGTIKVLVLAA 179 (179)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~-~~-~dg~i~iwd~~~ 179 (179)
.++..+.... ..++..+..+|- ....++ +. ..+.|.+|++.+
T Consensus 1228 ~~i~sw~~P~-----------~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~ 1274 (1431)
T KOG1240|consen 1228 VPILSWEHPA-----------RAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMET 1274 (1431)
T ss_pred ceeecccCcc-----------cCCcceEEeeccCCCCceEEEecccCCCceeeeeccc
Confidence 9888877643 456777777663 234444 44 477899999763
No 243
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.39 E-value=3.7e-12 Score=101.10 Aligned_cols=153 Identities=19% Similarity=0.271 Sum_probs=120.8
Q ss_pred CCCccEEEEEcCCceeEEeec--CCCceeEEEEcCCCCeEEEEe---------CCCcee--eecccCceeEEEEeeCCeE
Q 038439 1 MAYGKVKVWCTRQEASVLNID--MKANICCVKYNPGSSNYIAKY---------QSTAPC--VHGHKKAVSYVKFLSNDEL 67 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~---------~~~~~~--~~~~~~~i~~~~~~~~~~l 67 (179)
+.||.|++|....++.+..+. .+..|+.+.|+.+|+.+-++- -..+++ .+.|....+.++|.. ..+
T Consensus 2227 s~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~~~s~qchnk~~~Df~Fi~-s~~ 2305 (2439)
T KOG1064|consen 2227 SQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKPYTSWQCHNKALSDFRFIG-SLL 2305 (2439)
T ss_pred CCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCCcceeccccCCccccceeeee-hhh
Confidence 579999999999998888875 457899999999986664443 223444 778999999998877 455
Q ss_pred EEe---cCCCcEEEEecCC--C-cceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCC
Q 038439 68 ASA---STDSTLRLWDVKE--N-LPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDD 141 (179)
Q Consensus 68 ~~~---~~d~~v~iwd~~~--~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~ 141 (179)
+++ +.++.+.+||.-- . ..+. ++|.+.++++++.|..+.|++|+.+|.|++||++..+.+..+.
T Consensus 2306 ~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~-------- 2375 (2439)
T KOG1064|consen 2306 ATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQ-------- 2375 (2439)
T ss_pred hccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhh--------
Confidence 554 3577999999643 2 2233 7899999999999999999999999999999999877766543
Q ss_pred CcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439 142 TDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 142 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
. +. ...++++|+..|.++||++.
T Consensus 2376 ------~-------~~-~~~~f~~~ss~g~ikIw~~s 2398 (2439)
T KOG1064|consen 2376 ------A-------LD-TREYFVTGSSEGNIKIWRLS 2398 (2439)
T ss_pred ------h-------hh-hhheeeccCcccceEEEEcc
Confidence 2 34 56789999999999999975
No 244
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.36 E-value=2.3e-12 Score=84.02 Aligned_cols=122 Identities=17% Similarity=0.278 Sum_probs=96.1
Q ss_pred CCccEEEEEcCCceeEEee-----------cCCCceeEEEEcCCCCeEEEEe------------CCCcee----eecccC
Q 038439 2 AYGKVKVWCTRQEASVLNI-----------DMKANICCVKYNPGSSNYIAKY------------QSTAPC----VHGHKK 54 (179)
Q Consensus 2 ~d~~i~vwd~~~~~~~~~~-----------~~~~~v~~~~~~~~~~~~~~~~------------~~~~~~----~~~~~~ 54 (179)
++|.+.+||+.++..+..+ .|..+|.++.|.+.-..=+..| ..+..- ..-..-
T Consensus 173 Esghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknp 252 (323)
T KOG0322|consen 173 ESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNP 252 (323)
T ss_pred cCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCC
Confidence 5789999999987433222 3788999999987433323322 111111 222234
Q ss_pred ceeEEEEeeC-CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEc
Q 038439 55 AVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHK 123 (179)
Q Consensus 55 ~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~ 123 (179)
.|..+..-|| ..++|++.|+.+|||..++..++..++-|...|.+++|+|+...+|.++.|+.|.+|++
T Consensus 253 Gv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 253 GVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred CccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 5788899999 89999999999999999999999999999999999999999999999999999999986
No 245
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.35 E-value=1.1e-10 Score=78.68 Aligned_cols=161 Identities=15% Similarity=0.206 Sum_probs=109.2
Q ss_pred CccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe------------------------------------CCCc
Q 038439 3 YGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY------------------------------------QSTA 46 (179)
Q Consensus 3 d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------------------------------------~~~~ 46 (179)
|-+|.||++.+.+....-..+..+..++|+|+|+ +.+.. ..+.
T Consensus 113 ~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~-f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~ 191 (447)
T KOG4497|consen 113 DLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQ-FCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGN 191 (447)
T ss_pred eeEEEEEEeccceeEEecccccCceeEEECCCCc-eeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCc
Confidence 4578999998877655444556678888888884 44433 1111
Q ss_pred -------ee-----eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCCC-----------------------------
Q 038439 47 -------PC-----VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKEN----------------------------- 84 (179)
Q Consensus 47 -------~~-----~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~----------------------------- 84 (179)
++ .....-.+..++|+|. ++++.|+.|+.+|+.+--+-
T Consensus 192 ~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~q 271 (447)
T KOG4497|consen 192 WLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQ 271 (447)
T ss_pred EEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhh
Confidence 11 1122346788999998 99999999999987543211
Q ss_pred -------------------------------cceeeec------CCCCCeEEEEEeeCCCEEEEecc--CCcEEEEEcCC
Q 038439 85 -------------------------------LPVRTFR------GHMNEKNFVGLTVNSEYIACGSE--SNEVYVYHKEI 125 (179)
Q Consensus 85 -------------------------------~~~~~~~------~~~~~v~~~~~~~~~~~~~~~~~--d~~v~vwd~~~ 125 (179)
..+..++ .....+.-++|++|..++++-.. -+.+.+||++.
T Consensus 272 l~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~ 351 (447)
T KOG4497|consen 272 LLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQN 351 (447)
T ss_pred hcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechh
Confidence 0011111 12234667899999999887654 35689999998
Q ss_pred CccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439 126 SKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVL 177 (179)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 177 (179)
.+.-..+.- ..+|....|.|....|+.+....++++|..
T Consensus 352 l~l~avLiQ-------------k~piraf~WdP~~prL~vctg~srLY~W~p 390 (447)
T KOG4497|consen 352 LKLHAVLIQ-------------KHPIRAFEWDPGRPRLVVCTGKSRLYFWAP 390 (447)
T ss_pred hhhhhhhhh-------------ccceeEEEeCCCCceEEEEcCCceEEEEcC
Confidence 765444332 567999999999888888888888999865
No 246
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=5.9e-10 Score=81.03 Aligned_cols=159 Identities=9% Similarity=0.004 Sum_probs=96.0
Q ss_pred ccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe-CC------------Ccee-eecccCceeEEEEeeC-CeEE
Q 038439 4 GKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY-QS------------TAPC-VHGHKKAVSYVKFLSN-DELA 68 (179)
Q Consensus 4 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~------------~~~~-~~~~~~~i~~~~~~~~-~~l~ 68 (179)
..|.+||+.+++........+.+...+|+|+|+.++.+. .. ++.. +..+........|+|+ ..++
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~ 302 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLY 302 (430)
T ss_pred CEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEE
Confidence 358888888876654444455566899999997776544 11 1111 3333444566789999 6665
Q ss_pred Eec-CCC--cEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccC-C--cEEEEEcCCCccccccccCCCCCCCC
Q 038439 69 SAS-TDS--TLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSES-N--EVYVYHKEISKPVTWHRFSSPDMDDT 142 (179)
Q Consensus 69 ~~~-~d~--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d-~--~v~vwd~~~~~~~~~~~~~~~~~~~~ 142 (179)
..+ .++ .|.++|+.+++... +...........|+|+|++++....+ + .|.++|+.+++.... ...
T Consensus 303 f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~l-t~~------- 373 (430)
T PRK00178 303 FTSDRGGKPQIYKVNVNGGRAER-VTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRIL-TDT------- 373 (430)
T ss_pred EEECCCCCceEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEc-cCC-------
Confidence 544 333 57777877765432 22222233457899999998766543 3 588899988764322 111
Q ss_pred cccCCcceEEEEEEccCCCeEEEEeCC-C--cEEEEee
Q 038439 143 DEDAGSYFISAVCWKSDSPTMLTANSQ-G--TIKVLVL 177 (179)
Q Consensus 143 ~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~i~iwd~ 177 (179)
.......|+|+|+.++..+.+ | .+.++++
T Consensus 374 ------~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~ 405 (430)
T PRK00178 374 ------SLDESPSVAPNGTMLIYATRQQGRGVLMLVSI 405 (430)
T ss_pred ------CCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 011235799999988776653 3 3555443
No 247
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=4.8e-10 Score=81.18 Aligned_cols=163 Identities=11% Similarity=0.040 Sum_probs=93.2
Q ss_pred ccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeE--EEEe-CCCc------------ee-eecccCceeEEEEeeC-Ce
Q 038439 4 GKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNY--IAKY-QSTA------------PC-VHGHKKAVSYVKFLSN-DE 66 (179)
Q Consensus 4 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~-~~~~------------~~-~~~~~~~i~~~~~~~~-~~ 66 (179)
..|.+.|...++..........+.+-+|+|||+.+ +.+. +.++ .. +....+.....+|+|| ..
T Consensus 165 ~~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~ 244 (428)
T PRK01029 165 GELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKL 244 (428)
T ss_pred ceEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCE
Confidence 35667777666554444456667889999999753 2233 2211 11 2222334456789999 66
Q ss_pred EEEecC-----CCcEEEEecCCC---cceeeecCCCCCeEEEEEeeCCCEEEEec-cCCcEEEE--EcCC-Ccccccccc
Q 038439 67 LASAST-----DSTLRLWDVKEN---LPVRTFRGHMNEKNFVGLTVNSEYIACGS-ESNEVYVY--HKEI-SKPVTWHRF 134 (179)
Q Consensus 67 l~~~~~-----d~~v~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~d~~v~vw--d~~~-~~~~~~~~~ 134 (179)
|+..+. +..+..|++..+ +...............+|+|||+.|+..+ .+|...+| ++.. +.....+..
T Consensus 245 Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~ 324 (428)
T PRK01029 245 LAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTK 324 (428)
T ss_pred EEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEecc
Confidence 665442 224455776642 32222222223445689999999877654 45655555 4432 121111111
Q ss_pred CCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCC---CcEEEEeec
Q 038439 135 SSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQ---GTIKVLVLA 178 (179)
Q Consensus 135 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~iwd~~ 178 (179)
. ...+....|+|||+.|+..+.+ ..|.+||+.
T Consensus 325 ~------------~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~ 359 (428)
T PRK01029 325 K------------YRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLA 359 (428)
T ss_pred C------------CCCccceeECCCCCEEEEEEcCCCCcEEEEEECC
Confidence 0 2345678899999988876553 368888875
No 248
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.30 E-value=3.2e-09 Score=75.35 Aligned_cols=165 Identities=14% Similarity=0.108 Sum_probs=105.4
Q ss_pred CCccEEEEEcCCceeEEeecCCCce-eEEEEcCCCCeEEEEeCC----------Ccee--eecccCceeEEEEeeC-CeE
Q 038439 2 AYGKVKVWCTRQEASVLNIDMKANI-CCVKYNPGSSNYIAKYQS----------TAPC--VHGHKKAVSYVKFLSN-DEL 67 (179)
Q Consensus 2 ~d~~i~vwd~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~----------~~~~--~~~~~~~i~~~~~~~~-~~l 67 (179)
.+|.|.|.|..+.+.+..+.....+ ..+.|+|||+.++++++. .+.+ ++. ......++++++ +++
T Consensus 14 ~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~-G~~~~~i~~s~DG~~~ 92 (369)
T PF02239_consen 14 GSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV-GGNPRGIAVSPDGKYV 92 (369)
T ss_dssp GGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE--SSEEEEEEE--TTTEE
T ss_pred CCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec-CCCcceEEEcCCCCEE
Confidence 5789999999999999999865554 557899999888887732 2222 222 233467999999 777
Q ss_pred EEec-CCCcEEEEecCCCcceeeecCC-------CCCeEEEEEeeCCCEEE-EeccCCcEEEEEcCCCccccccccCCCC
Q 038439 68 ASAS-TDSTLRLWDVKENLPVRTFRGH-------MNEKNFVGLTVNSEYIA-CGSESNEVYVYHKEISKPVTWHRFSSPD 138 (179)
Q Consensus 68 ~~~~-~d~~v~iwd~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~~-~~~~d~~v~vwd~~~~~~~~~~~~~~~~ 138 (179)
+++. ..+.+.++|.++.+++..+... .+.+..+.-+|....++ ..-+.+.|.+.|....+.+.......
T Consensus 93 ~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~-- 170 (369)
T PF02239_consen 93 YVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKV-- 170 (369)
T ss_dssp EEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE---
T ss_pred EEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecc--
Confidence 7665 5889999999999888876532 33566777788777554 44555888888887765443222211
Q ss_pred CCCCcccCCcceEEEEEEccCCCeEEEE-eCCCcEEEEeec
Q 038439 139 MDDTDEDAGSYFISAVCWKSDSPTMLTA-NSQGTIKVLVLA 178 (179)
Q Consensus 139 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~iwd~~ 178 (179)
........|+|++++++++ ..++.|-++|.+
T Consensus 171 ---------g~~~~D~~~dpdgry~~va~~~sn~i~viD~~ 202 (369)
T PF02239_consen 171 ---------GRFPHDGGFDPDGRYFLVAANGSNKIAVIDTK 202 (369)
T ss_dssp ----------TTEEEEEE-TTSSEEEEEEGGGTEEEEEETT
T ss_pred ---------cccccccccCcccceeeecccccceeEEEeec
Confidence 4457789999999987664 456688888765
No 249
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.28 E-value=1.3e-09 Score=79.48 Aligned_cols=158 Identities=7% Similarity=0.028 Sum_probs=92.4
Q ss_pred cEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe-CC------------Ccee-eecccCceeEEEEeeC-CeEEE
Q 038439 5 KVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY-QS------------TAPC-VHGHKKAVSYVKFLSN-DELAS 69 (179)
Q Consensus 5 ~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~------------~~~~-~~~~~~~i~~~~~~~~-~~l~~ 69 (179)
.|.+||+.+++..............+|+|+|+.++.+. .. ++.. +..+........|+|+ ..++.
T Consensus 243 ~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f 322 (448)
T PRK04792 243 EIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIF 322 (448)
T ss_pred EEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEE
Confidence 57888888776543333344456789999998776654 11 1111 3334444567889999 66655
Q ss_pred ec-CCC--cEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEecc-CC--cEEEEEcCCCccccccccCCCCCCCCc
Q 038439 70 AS-TDS--TLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSE-SN--EVYVYHKEISKPVTWHRFSSPDMDDTD 143 (179)
Q Consensus 70 ~~-~d~--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-d~--~v~vwd~~~~~~~~~~~~~~~~~~~~~ 143 (179)
.+ .++ .|.++|+.+++... +..........+|+|||++++..+. ++ .|.++|+.+++.... ...
T Consensus 323 ~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~l-t~~-------- 392 (448)
T PRK04792 323 TSERGGKPQIYRVNLASGKVSR-LTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVL-TST-------- 392 (448)
T ss_pred EECCCCCceEEEEECCCCCEEE-EecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEc-cCC--------
Confidence 44 344 46666777665432 2212222345789999999876554 33 456678877654321 110
Q ss_pred ccCCcceEEEEEEccCCCeEEEEeC-CCc--EEEEee
Q 038439 144 EDAGSYFISAVCWKSDSPTMLTANS-QGT--IKVLVL 177 (179)
Q Consensus 144 ~~~~~~~i~~~~~~~~~~~l~~~~~-dg~--i~iwd~ 177 (179)
.......|+|+|+.|+..+. ++. +.+++.
T Consensus 393 -----~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~ 424 (448)
T PRK04792 393 -----RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI 424 (448)
T ss_pred -----CCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 01123479999998876554 333 555554
No 250
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.23 E-value=3.8e-10 Score=79.98 Aligned_cols=99 Identities=14% Similarity=0.111 Sum_probs=77.9
Q ss_pred EEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCC
Q 038439 68 ASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAG 147 (179)
Q Consensus 68 ~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (179)
++-..++.|.+.|..+.+.+..+.........+.++|||+++++.+.||.|.++|+.+.+.+.....
T Consensus 10 V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~------------- 76 (369)
T PF02239_consen 10 VVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV------------- 76 (369)
T ss_dssp EEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE--------------
T ss_pred EEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec-------------
Confidence 4566789999999999999998876544445578999999999999999999999999998888776
Q ss_pred cceEEEEEEccCCCeEEEEe-CCCcEEEEeecC
Q 038439 148 SYFISAVCWKSDSPTMLTAN-SQGTIKVLVLAA 179 (179)
Q Consensus 148 ~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~ 179 (179)
......+++++||+++++++ .++.+.++|.++
T Consensus 77 G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~t 109 (369)
T PF02239_consen 77 GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAET 109 (369)
T ss_dssp SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT
T ss_pred CCCcceEEEcCCCCEEEEEecCCCceeEecccc
Confidence 55678899999999998876 488999999653
No 251
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.22 E-value=1.7e-08 Score=70.68 Aligned_cols=101 Identities=10% Similarity=0.061 Sum_probs=71.2
Q ss_pred CeEEEecCCCcEEEEecCCC-----cceeeecC-------CCCCeEEEEEeeCCCEEEEec----------cCCcEEEEE
Q 038439 65 DELASASTDSTLRLWDVKEN-----LPVRTFRG-------HMNEKNFVGLTVNSEYIACGS----------ESNEVYVYH 122 (179)
Q Consensus 65 ~~l~~~~~d~~v~iwd~~~~-----~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~~----------~d~~v~vwd 122 (179)
..+.... .|.|.+.|+... +....+.. ......-++++|+++.+++.. ..+.|.++|
T Consensus 207 ~~~~vs~-eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD 285 (352)
T TIGR02658 207 RLVWPTY-TGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVD 285 (352)
T ss_pred cEEEEec-CCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEE
Confidence 4444444 499999996442 22222211 122334599999998887743 225799999
Q ss_pred cCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCC-eEEEEe-CCCcEEEEeecC
Q 038439 123 KEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSP-TMLTAN-SQGTIKVLVLAA 179 (179)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~-~dg~i~iwd~~~ 179 (179)
..+.+.+..+.. ...+..++++||++ +|++.. .++.|.++|..+
T Consensus 286 ~~t~kvi~~i~v-------------G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t 331 (352)
T TIGR02658 286 AKTGKRLRKIEL-------------GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAET 331 (352)
T ss_pred CCCCeEEEEEeC-------------CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcC
Confidence 999998887776 66789999999999 888777 578899999753
No 252
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.22 E-value=3.5e-09 Score=69.72 Aligned_cols=165 Identities=12% Similarity=0.036 Sum_probs=108.0
Q ss_pred CCCccEEEEEcCCceeEEeecCC-CceeEEEEcCCCCeEEEEeCCC-----------cee----eecccCceeEEEEeeC
Q 038439 1 MAYGKVKVWCTRQEASVLNIDMK-ANICCVKYNPGSSNYIAKYQST-----------APC----VHGHKKAVSYVKFLSN 64 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~-----------~~~----~~~~~~~i~~~~~~~~ 64 (179)
+.|.++++.++..+......... -.+.++.+++++....++|+.. +.+ ....+..=.+..|+..
T Consensus 135 sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~ 214 (344)
T KOG4532|consen 135 SNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEN 214 (344)
T ss_pred cCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccC
Confidence 45777777777654433222211 3388999999997777777222 222 2222333456778877
Q ss_pred -CeEEEecCCCcEEEEecCCC-ccee----eecCCCCCeEEEEEeeCCC--EEEEeccCCcEEEEEcCCCccccccccCC
Q 038439 65 -DELASASTDSTLRLWDVKEN-LPVR----TFRGHMNEKNFVGLTVNSE--YIACGSESNEVYVYHKEISKPVTWHRFSS 136 (179)
Q Consensus 65 -~~l~~~~~d~~v~iwd~~~~-~~~~----~~~~~~~~v~~~~~~~~~~--~~~~~~~d~~v~vwd~~~~~~~~~~~~~~ 136 (179)
..+++++.||++.|||++.- .++. +-..|.+.++.+.|++-|. +|+..-.-+.+.+.|+++++..+......
T Consensus 215 ~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~ 294 (344)
T KOG4532|consen 215 DLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPD 294 (344)
T ss_pred cceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCc
Confidence 88999999999999999863 2222 2234788999999998654 35555567889999999988766554432
Q ss_pred CCCCCCcccCCcceEEEEEEccCCCeEEEEeCC
Q 038439 137 PDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQ 169 (179)
Q Consensus 137 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 169 (179)
.. +..|....|..-.|+.++..+.+.+++
T Consensus 295 d~----~~~~~tq~ifgt~f~~~n~s~~v~~e~ 323 (344)
T KOG4532|consen 295 DV----ERKHNTQHIFGTNFNNENESNDVKNEL 323 (344)
T ss_pred cc----cccccccccccccccCCCcccccccch
Confidence 21 223324457888888777766666554
No 253
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.20 E-value=1.6e-08 Score=68.98 Aligned_cols=167 Identities=10% Similarity=0.089 Sum_probs=111.8
Q ss_pred CccEEEEEcCCc----eeEEeecCCCceeEEEEcCCCCeEEEEeC---------------CCcee----eecccCceeEE
Q 038439 3 YGKVKVWCTRQE----ASVLNIDMKANICCVKYNPGSSNYIAKYQ---------------STAPC----VHGHKKAVSYV 59 (179)
Q Consensus 3 d~~i~vwd~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---------------~~~~~----~~~~~~~i~~~ 59 (179)
..-|++|++.+. ..++.....+.++-++|+|+++.++++.. .++.- ......+-..+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 567899988743 23344456788999999999977777651 12222 11112233678
Q ss_pred EEeeC-CeEEEecC-CCcEEEEecCC-Cccee--eecCCCCC----------eEEEEEeeCCCEEEEecc-CCcEEEEEc
Q 038439 60 KFLSN-DELASAST-DSTLRLWDVKE-NLPVR--TFRGHMNE----------KNFVGLTVNSEYIACGSE-SNEVYVYHK 123 (179)
Q Consensus 60 ~~~~~-~~l~~~~~-d~~v~iwd~~~-~~~~~--~~~~~~~~----------v~~~~~~~~~~~~~~~~~-d~~v~vwd~ 123 (179)
+++++ ++++++.. .+.|.++-++. +.+.. ....|.+. +....+.|+++++++... .-.|.+|++
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 88888 78887765 57899998865 32211 11123333 778889999999887754 346899999
Q ss_pred CCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeC-CCcEEEEeec
Q 038439 124 EISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANS-QGTIKVLVLA 178 (179)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~ 178 (179)
..++....-...-. . +...+.+.|+|++++.++.++ +++|.+|..+
T Consensus 175 ~dg~L~~~~~~~v~--------~-G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~ 221 (346)
T COG2706 175 DDGKLTPADPAEVK--------P-GAGPRHIVFHPNGKYAYLVNELNSTVDVLEYN 221 (346)
T ss_pred ccCccccccccccC--------C-CCCcceEEEcCCCcEEEEEeccCCEEEEEEEc
Confidence 97765432222111 1 567889999999999988887 8899999865
No 254
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=99.19 E-value=8.5e-11 Score=55.86 Aligned_cols=38 Identities=32% Similarity=0.560 Sum_probs=36.1
Q ss_pred cceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEE
Q 038439 85 LPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYH 122 (179)
Q Consensus 85 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd 122 (179)
+++.++++|.+.|++++|+|++.+|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 56788999999999999999999999999999999997
No 255
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.19 E-value=6.7e-10 Score=76.35 Aligned_cols=95 Identities=9% Similarity=0.171 Sum_probs=73.9
Q ss_pred CCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceE
Q 038439 72 TDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFI 151 (179)
Q Consensus 72 ~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 151 (179)
....+.+|...++.+ ..+-+|-+-+..++|+||+++|+++..|..|++-.....-.+..+.+ +| ...|
T Consensus 130 D~~~~di~s~~~~~~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfcl----------GH-~eFV 197 (390)
T KOG3914|consen 130 DVYSFDILSADSGRC-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCL----------GH-KEFV 197 (390)
T ss_pred CceeeeeecccccCc-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhcc----------cc-Hhhe
Confidence 334455555554443 34457899999999999999999999999999988877666666665 23 7789
Q ss_pred EEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439 152 SAVCWKSDSPTMLTANSQGTIKVLVLAA 179 (179)
Q Consensus 152 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 179 (179)
..++.-++ ..|++++.|+++++||+++
T Consensus 198 S~isl~~~-~~LlS~sGD~tlr~Wd~~s 224 (390)
T KOG3914|consen 198 STISLTDN-YLLLSGSGDKTLRLWDITS 224 (390)
T ss_pred eeeeeccC-ceeeecCCCCcEEEEeccc
Confidence 99998764 5589999999999999864
No 256
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.18 E-value=2.8e-10 Score=80.11 Aligned_cols=170 Identities=14% Similarity=0.159 Sum_probs=121.0
Q ss_pred CCCccEEEEEcCCceeEEeec--CCCceeEEEEcCCC--CeEEEEeCC-----------Cce---e-eecccCceeEEEE
Q 038439 1 MAYGKVKVWCTRQEASVLNID--MKANICCVKYNPGS--SNYIAKYQS-----------TAP---C-VHGHKKAVSYVKF 61 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~--~~~~~~~~~-----------~~~---~-~~~~~~~i~~~~~ 61 (179)
|+|..|.+||...++....+. |...|....|-|.. ..++.++.. +.. . +..|.++|..++.
T Consensus 161 SDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav 240 (559)
T KOG1334|consen 161 SDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAV 240 (559)
T ss_pred CccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeee
Confidence 679999999999998887775 66777777776642 234444411 111 1 6679999999999
Q ss_pred eeC--CeEEEecCCCcEEEEecCCCcceeeec---CCCC---CeEEEEEeeCCC-EEEEeccCCcEEEEEcCCCccc---
Q 038439 62 LSN--DELASASTDSTLRLWDVKENLPVRTFR---GHMN---EKNFVGLTVNSE-YIACGSESNEVYVYHKEISKPV--- 129 (179)
Q Consensus 62 ~~~--~~l~~~~~d~~v~iwd~~~~~~~~~~~---~~~~---~v~~~~~~~~~~-~~~~~~~d~~v~vwd~~~~~~~--- 129 (179)
-|+ ..|.+++.|+.+.-+|++...+...+. .+.. ....++..|... ++++|+.|-.+++||.+.-...
T Consensus 241 ~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n 320 (559)
T KOG1334|consen 241 EPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENN 320 (559)
T ss_pred cCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhcccc
Confidence 999 789999999999999999865544332 2223 456788888655 6899999999999998864322
Q ss_pred ---cccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEe
Q 038439 130 ---TWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLV 176 (179)
Q Consensus 130 ---~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd 176 (179)
..+.. .+.. ......|++++|+.++.-|.++..|-.|+++.
T Consensus 321 ~~~~~f~p-~hl~-----~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~ 364 (559)
T KOG1334|consen 321 GVLDKFCP-HHLV-----EDDPVNITGLVYSHDGSELLASYNDEDIYLFN 364 (559)
T ss_pred chhhhcCC-cccc-----ccCcccceeEEecCCccceeeeecccceEEec
Confidence 11111 1110 01155799999998887788888888899884
No 257
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.17 E-value=6e-09 Score=69.33 Aligned_cols=112 Identities=11% Similarity=0.096 Sum_probs=83.1
Q ss_pred eEEEEeeC-CeEEEecCCCcEEEEecCCCc--ceeeecCCCCCeEEEEEeeC-CCEEEEeccCCcEEEEEcCCCc-cccc
Q 038439 57 SYVKFLSN-DELASASTDSTLRLWDVKENL--PVRTFRGHMNEKNFVGLTVN-SEYIACGSESNEVYVYHKEISK-PVTW 131 (179)
Q Consensus 57 ~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~d~~v~vwd~~~~~-~~~~ 131 (179)
.++.|++. ..++++-.+|.+.+-+..... .++..+.|.-+.+...|+.. .+.+++|+.|+.+..||+|..+ .+..
T Consensus 125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~ 204 (339)
T KOG0280|consen 125 LSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWH 204 (339)
T ss_pred eEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeee
Confidence 45667777 678888888888865555443 33478889999999999874 6788999999999999999433 2211
Q ss_pred cccCCCCCCCCcccCCcceEEEEEEcc-CCCeEEEEeCCCcEEEEeecC
Q 038439 132 HRFSSPDMDDTDEDAGSYFISAVCWKS-DSPTMLTANSQGTIKVLVLAA 179 (179)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~ 179 (179)
. . ..|...|.++.-+| .+.++++|+.|..|++||.++
T Consensus 205 n-~----------kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRn 242 (339)
T KOG0280|consen 205 N-S----------KVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRN 242 (339)
T ss_pred c-c----------eeeecceEEEecCCCCCceEEEeccccceeeeehhc
Confidence 1 1 11266788887775 678999999999999999874
No 258
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.15 E-value=1.8e-08 Score=72.81 Aligned_cols=150 Identities=7% Similarity=-0.003 Sum_probs=91.7
Q ss_pred CccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe-------------CCCcee-eecccCceeEEEEeeC-CeE
Q 038439 3 YGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY-------------QSTAPC-VHGHKKAVSYVKFLSN-DEL 67 (179)
Q Consensus 3 d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-------------~~~~~~-~~~~~~~i~~~~~~~~-~~l 67 (179)
+..|.++|+.+++........+......|+|||..++.+. ..++.. +..+........|+|| +.+
T Consensus 212 ~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I 291 (419)
T PRK04043 212 KPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRI 291 (419)
T ss_pred CCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEE
Confidence 3468888888877665555666677889999998776654 112211 3223322345679999 555
Q ss_pred EEec-CCC--cEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccC---------CcEEEEEcCCCccccccccC
Q 038439 68 ASAS-TDS--TLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSES---------NEVYVYHKEISKPVTWHRFS 135 (179)
Q Consensus 68 ~~~~-~d~--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d---------~~v~vwd~~~~~~~~~~~~~ 135 (179)
+..+ ..+ .|.+.|+.+++..+...... ....|+|+|++++..... ..|.+.|+.+++.... ..
T Consensus 292 ~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~---~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~L-T~- 366 (419)
T PRK04043 292 VFVSDRLGYPNIFMKKLNSGSVEQVVFHGK---NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRL-TA- 366 (419)
T ss_pred EEEECCCCCceEEEEECCCCCeEeCccCCC---cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEEC-CC-
Confidence 5444 333 57777887766533222111 124899999988765443 3678888887764322 11
Q ss_pred CCCCCCCcccCCcceEEEEEEccCCCeEEEEeCC
Q 038439 136 SPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQ 169 (179)
Q Consensus 136 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 169 (179)
........|+|||+.++..+.+
T Consensus 367 ------------~~~~~~p~~SPDG~~I~f~~~~ 388 (419)
T PRK04043 367 ------------NGVNQFPRFSSDGGSIMFIKYL 388 (419)
T ss_pred ------------CCCcCCeEECCCCCEEEEEEcc
Confidence 1112247899999988766543
No 259
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.15 E-value=6.5e-08 Score=68.43 Aligned_cols=166 Identities=11% Similarity=0.152 Sum_probs=101.7
Q ss_pred CccEEEEEcCC-ceeEEe---ec-----------CCCceeEEEEcCCCCeEEEEe-----------CCCc--e--e--ee
Q 038439 3 YGKVKVWCTRQ-EASVLN---ID-----------MKANICCVKYNPGSSNYIAKY-----------QSTA--P--C--VH 50 (179)
Q Consensus 3 d~~i~vwd~~~-~~~~~~---~~-----------~~~~v~~~~~~~~~~~~~~~~-----------~~~~--~--~--~~ 50 (179)
+|+|.++++.. +..... +. ....+.++.|+|+++.++++. +... . . +.
T Consensus 108 ~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~ 187 (345)
T PF10282_consen 108 GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIK 187 (345)
T ss_dssp TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEE
T ss_pred CCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccc
Confidence 67889999876 333222 21 224578999999997777765 1111 1 0 11
Q ss_pred -cccCceeEEEEeeC-CeE-EEecCCCcEEEEecC--CCc--ceeeecC----C--CCCeEEEEEeeCCCEEEEec-cCC
Q 038439 51 -GHKKAVSYVKFLSN-DEL-ASASTDSTLRLWDVK--ENL--PVRTFRG----H--MNEKNFVGLTVNSEYIACGS-ESN 116 (179)
Q Consensus 51 -~~~~~i~~~~~~~~-~~l-~~~~~d~~v~iwd~~--~~~--~~~~~~~----~--~~~v~~~~~~~~~~~~~~~~-~d~ 116 (179)
.....-..+.|+|+ .++ ++.-.++.|.++++. .+. .+..+.. . ......+.++|||++++++. ..+
T Consensus 188 ~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~ 267 (345)
T PF10282_consen 188 VPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSN 267 (345)
T ss_dssp CSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTT
T ss_pred cccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCC
Confidence 12233467899999 555 455568889999988 332 2222221 1 12567899999999987665 467
Q ss_pred cEEEEEcCC--CccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeC-CCcEEEEeec
Q 038439 117 EVYVYHKEI--SKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANS-QGTIKVLVLA 178 (179)
Q Consensus 117 ~v~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~ 178 (179)
.|.+|++.. ++.......... ....+.+.++|+|++|+++.. ++.|.+|++.
T Consensus 268 sI~vf~~d~~~g~l~~~~~~~~~----------G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 268 SISVFDLDPATGTLTLVQTVPTG----------GKFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp EEEEEEECTTTTTEEEEEEEEES----------SSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred EEEEEEEecCCCceEEEEEEeCC----------CCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 899999942 333221111100 345789999999999998875 6789999864
No 260
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.08 E-value=2.8e-09 Score=75.27 Aligned_cols=165 Identities=15% Similarity=0.233 Sum_probs=120.1
Q ss_pred CCCccEEEEEcCCceeEEee---c-CCC---ceeEEEEcCCCCeEEEEeC-----------------CCcee--------
Q 038439 1 MAYGKVKVWCTRQEASVLNI---D-MKA---NICCVKYNPGSSNYIAKYQ-----------------STAPC-------- 48 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~~~~~~---~-~~~---~v~~~~~~~~~~~~~~~~~-----------------~~~~~-------- 48 (179)
|.|+.+.-+|+....+...+ . ... ...+++.+|...+.+++|. ...++
T Consensus 252 geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl 331 (559)
T KOG1334|consen 252 GEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHL 331 (559)
T ss_pred ccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccc
Confidence 56888888888776543333 2 222 4688999999888888870 00111
Q ss_pred eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCC--C----------cceee-ecCCCC--CeEEEE-EeeCCCEEEE
Q 038439 49 VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKE--N----------LPVRT-FRGHMN--EKNFVG-LTVNSEYIAC 111 (179)
Q Consensus 49 ~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~--~----------~~~~~-~~~~~~--~v~~~~-~~~~~~~~~~ 111 (179)
.....-.|++++|+.+ ..++++-.|-.|.++.-.. + ..+.. +++|.. .|..+- |-|...|+++
T Consensus 332 ~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvS 411 (559)
T KOG1334|consen 332 VEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVS 411 (559)
T ss_pred cccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEe
Confidence 1123446899999988 7777778888899985432 2 12223 677754 466666 4688999999
Q ss_pred eccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439 112 GSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVL 177 (179)
Q Consensus 112 ~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 177 (179)
|+.-|.|.+|+-.+++.+..++-. ..-|+|+.=+|--..||+++-|..|+||-.
T Consensus 412 GSDCGhIFiW~K~t~eii~~MegD------------r~VVNCLEpHP~~PvLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 412 GSDCGHIFIWDKKTGEIIRFMEGD------------RHVVNCLEPHPHLPVLASSGIDHDVKIWTP 465 (559)
T ss_pred cCccceEEEEecchhHHHHHhhcc------------cceEeccCCCCCCchhhccCCccceeeecC
Confidence 999999999999999988776643 447899999999999999999999999964
No 261
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.06 E-value=4.4e-09 Score=80.04 Aligned_cols=100 Identities=18% Similarity=0.262 Sum_probs=84.0
Q ss_pred CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcc
Q 038439 65 DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDE 144 (179)
Q Consensus 65 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 144 (179)
=++++|+--+.|.+|+....+.-..+.+|.+.+..+.++.||+++++.++|+.+++|++.+.+...-.-+
T Consensus 146 ~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~f---------- 215 (967)
T KOG0974|consen 146 LYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGF---------- 215 (967)
T ss_pred EEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccc----------
Confidence 5678888889999999874333335789999999999999999999999999999999999876652221
Q ss_pred cCCcceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439 145 DAGSYFISAVCWKSDSPTMLTANSQGTIKVLVL 177 (179)
Q Consensus 145 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 177 (179)
+| ..++++++|.|+ .+++++.|-++++|+.
T Consensus 216 gH-saRvw~~~~~~n--~i~t~gedctcrvW~~ 245 (967)
T KOG0974|consen 216 GH-SARVWACCFLPN--RIITVGEDCTCRVWGV 245 (967)
T ss_pred cc-cceeEEEEeccc--eeEEeccceEEEEEec
Confidence 22 889999999998 8999999999999954
No 262
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.04 E-value=4.1e-10 Score=75.59 Aligned_cols=154 Identities=14% Similarity=0.221 Sum_probs=97.7
Q ss_pred CCCceeEEEEcCCCCeEEEEe-------------CCCcee-eecc-----cCceeEEEEeeC--CeEEEecCCCcEEEEe
Q 038439 22 MKANICCVKYNPGSSNYIAKY-------------QSTAPC-VHGH-----KKAVSYVKFLSN--DELASASTDSTLRLWD 80 (179)
Q Consensus 22 ~~~~v~~~~~~~~~~~~~~~~-------------~~~~~~-~~~~-----~~~i~~~~~~~~--~~l~~~~~d~~v~iwd 80 (179)
|...|.++.|+.+...++.+. .....+ ++.| +..|++..|+|. ..+...+..|.|++-|
T Consensus 171 H~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~D 250 (460)
T COG5170 171 HPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLND 250 (460)
T ss_pred ceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehh
Confidence 445588999999887776665 111111 3333 456889999999 8888889999999999
Q ss_pred cCCCcce------e--e--------ecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCc-cccccccCCCCCCCCc
Q 038439 81 VKENLPV------R--T--------FRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISK-PVTWHRFSSPDMDDTD 143 (179)
Q Consensus 81 ~~~~~~~------~--~--------~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~-~~~~~~~~~~~~~~~~ 143 (179)
+++..+. . + +.+-.+.|..+.|+++|++|++-.. -+|++||+++.+ ++.+.......+...-
T Consensus 251 lRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~ 329 (460)
T COG5170 251 LRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELN 329 (460)
T ss_pred hhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHH
Confidence 9853211 1 1 1112356778899999999987654 579999999743 4444422111000000
Q ss_pred ccCCcceE---EEEEEccCCCeEEEEeCCCcEEEEe
Q 038439 144 EDAGSYFI---SAVCWKSDSPTMLTANSQGTIKVLV 176 (179)
Q Consensus 144 ~~~~~~~i---~~~~~~~~~~~l~~~~~dg~i~iwd 176 (179)
.......| ..+.|+.+.+.+++|+..+..-+|-
T Consensus 330 d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 330 DVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred hhhhccceeeeEEEEecCCcccccccccccceeeec
Confidence 00002223 3477888888899999887776664
No 263
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.03 E-value=6.3e-08 Score=68.99 Aligned_cols=161 Identities=12% Similarity=0.116 Sum_probs=108.2
Q ss_pred CCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe--------------------CCCcee--eecccCceeE
Q 038439 2 AYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY--------------------QSTAPC--VHGHKKAVSY 58 (179)
Q Consensus 2 ~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~--------------------~~~~~~--~~~~~~~i~~ 58 (179)
.++++++|.+.....+.+-. .+..=..+.|++.|..+++.. -+++.+ ..+-.++|..
T Consensus 200 kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhd 279 (561)
T COG5354 200 KPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHD 279 (561)
T ss_pred CCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceecccccccee
Confidence 46778888887666555433 233335688888887666554 011111 1245789999
Q ss_pred EEEeeC-CeEEEe--cCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccC---CcEEEEEcCCCcccccc
Q 038439 59 VKFLSN-DELASA--STDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSES---NEVYVYHKEISKPVTWH 132 (179)
Q Consensus 59 ~~~~~~-~~l~~~--~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d---~~v~vwd~~~~~~~~~~ 132 (179)
+.|.|. +.+++. -.+..+.++|++.. .... .....=..+.|+|.+++++.++-| |.+.+||......+...
T Consensus 280 f~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~--~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~ 356 (561)
T COG5354 280 FTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFY--FPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGA 356 (561)
T ss_pred eeecccCCceeEEecccccceeecccccc-eEEe--cCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEE
Confidence 999999 665554 46888999999865 3322 234445678899999998886654 77999998765544321
Q ss_pred ccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeC------CCcEEEEeec
Q 038439 133 RFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANS------QGTIKVLVLA 178 (179)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------dg~i~iwd~~ 178 (179)
+. .....-+.|+|+++++.+... |..+.|||+.
T Consensus 357 -~~------------~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~ 395 (561)
T COG5354 357 -FN------------GLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVY 395 (561)
T ss_pred -ee------------cCCceEeeccCCceEEEecCCCcccccCcceEEEEec
Confidence 21 333455779999999887654 7789999973
No 264
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.02 E-value=4.1e-07 Score=72.72 Aligned_cols=124 Identities=12% Similarity=0.066 Sum_probs=82.2
Q ss_pred eeEEEEeeC-C-eEEEecCCCcEEEEecCCCcceeee-------------cCC--------CCCeEEEEEeeCCCEEEEe
Q 038439 56 VSYVKFLSN-D-ELASASTDSTLRLWDVKENLPVRTF-------------RGH--------MNEKNFVGLTVNSEYIACG 112 (179)
Q Consensus 56 i~~~~~~~~-~-~l~~~~~d~~v~iwd~~~~~~~~~~-------------~~~--------~~~v~~~~~~~~~~~~~~~ 112 (179)
...++++|+ + .+++-+.++.|++||+.++...... -.. -.....++++++|..+++-
T Consensus 742 P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVAD 821 (1057)
T PLN02919 742 PSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVAD 821 (1057)
T ss_pred ccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEE
Confidence 356899999 5 5566677899999999865422110 000 1124578999999988888
Q ss_pred ccCCcEEEEEcCCCccccccccCCCCC-CCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439 113 SESNEVYVYHKEISKPVTWHRFSSPDM-DDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA 179 (179)
Q Consensus 113 ~~d~~v~vwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 179 (179)
..++.|++||..++............. ........-.....++++++|+.+++-+.++.|++||+++
T Consensus 822 s~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~ 889 (1057)
T PLN02919 822 SYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNK 889 (1057)
T ss_pred CCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence 889999999998776543222111000 0000011123577899999999888888899999999863
No 265
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.01 E-value=7.9e-09 Score=71.24 Aligned_cols=85 Identities=18% Similarity=0.242 Sum_probs=70.2
Q ss_pred eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCcceeee-cCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCC
Q 038439 49 VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTF-RGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEIS 126 (179)
Q Consensus 49 ~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~ 126 (179)
+-+|-..+..++|+|| .+++++..|..||+-.....-.+..+ -+|...|..++.-++ ..|++++.|++|++||++++
T Consensus 147 ~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~sg 225 (390)
T KOG3914|consen 147 ILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITSG 225 (390)
T ss_pred hhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEecccC
Confidence 6688899999999999 99999999999999776654444443 468999999998764 45899999999999999999
Q ss_pred cccccccc
Q 038439 127 KPVTWHRF 134 (179)
Q Consensus 127 ~~~~~~~~ 134 (179)
+.+..+.+
T Consensus 226 k~L~t~dl 233 (390)
T KOG3914|consen 226 KLLDTCDL 233 (390)
T ss_pred Ccccccch
Confidence 88765543
No 266
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.00 E-value=2.1e-09 Score=73.03 Aligned_cols=144 Identities=11% Similarity=0.188 Sum_probs=99.3
Q ss_pred ccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe-CCCcee----------------eecccCceeEEEEee-C-
Q 038439 4 GKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY-QSTAPC----------------VHGHKKAVSYVKFLS-N- 64 (179)
Q Consensus 4 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~----------------~~~~~~~i~~~~~~~-~- 64 (179)
..|-+-|++++.. +.+..++.|.++.|+..++ ++..| +.++.+ .--|...|+++.... +
T Consensus 234 qqv~L~nvetg~~-qsf~sksDVfAlQf~~s~n-Lv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~ 311 (425)
T KOG2695|consen 234 QQVLLTNVETGHQ-QSFQSKSDVFALQFAGSDN-LVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQ 311 (425)
T ss_pred ceeEEEEeecccc-cccccchhHHHHHhcccCC-eeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhcccc
Confidence 3455555555532 3455678899999998774 55555 444433 223566777777665 3
Q ss_pred CeEEEecCCCcEEEEecCCCcc---eeeecCCCCCeEE--EEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCC
Q 038439 65 DELASASTDSTLRLWDVKENLP---VRTFRGHMNEKNF--VGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDM 139 (179)
Q Consensus 65 ~~l~~~~~d~~v~iwd~~~~~~---~~~~~~~~~~v~~--~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~ 139 (179)
.+|++.+.+|.|++||++.-++ +.++.+|...-.- +...+....+++++.|...++|.++.+..+.+.++.....
T Consensus 312 q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~ 391 (425)
T KOG2695|consen 312 QKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSAS 391 (425)
T ss_pred ceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCCCccc
Confidence 7899999999999999997666 8888888543222 3345566788889999999999999999888776643321
Q ss_pred CCCcccCCcceEEEEEEc
Q 038439 140 DDTDEDAGSYFISAVCWK 157 (179)
Q Consensus 140 ~~~~~~~~~~~i~~~~~~ 157 (179)
+..+.+++|.
T Consensus 392 --------e~d~~sv~~~ 401 (425)
T KOG2695|consen 392 --------EVDIPSVAFD 401 (425)
T ss_pred --------cccccceehh
Confidence 3356666664
No 267
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=99.00 E-value=1.6e-09 Score=51.34 Aligned_cols=32 Identities=34% Similarity=0.733 Sum_probs=31.1
Q ss_pred eecccCceeEEEEeeC-CeEEEecCCCcEEEEe
Q 038439 49 VHGHKKAVSYVKFLSN-DELASASTDSTLRLWD 80 (179)
Q Consensus 49 ~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd 80 (179)
+.+|...|++++|+|+ .++++++.|+.|++||
T Consensus 7 ~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 7 FRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 8899999999999999 9999999999999997
No 268
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.00 E-value=9.9e-07 Score=62.50 Aligned_cols=167 Identities=11% Similarity=0.127 Sum_probs=104.1
Q ss_pred CccEEEEEc--CCcee--EEeecCCCceeEEEEcCCCCeEEEEeCC---Ccee----eec-------------ccCceeE
Q 038439 3 YGKVKVWCT--RQEAS--VLNIDMKANICCVKYNPGSSNYIAKYQS---TAPC----VHG-------------HKKAVSY 58 (179)
Q Consensus 3 d~~i~vwd~--~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~~~----~~~-------------~~~~i~~ 58 (179)
.+.|.+|++ .+++. +..+.......-++++|+++.++++... ...+ +.. ....-..
T Consensus 12 ~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~ 91 (345)
T PF10282_consen 12 GGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCH 91 (345)
T ss_dssp STEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEE
T ss_pred CCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEE
Confidence 478888887 44443 3334456678889999999888877632 1111 111 1223346
Q ss_pred EEEeeC-CeEEEec-CCCcEEEEecCC-Ccceee---ec----------CCCCCeEEEEEeeCCCEEEEecc-CCcEEEE
Q 038439 59 VKFLSN-DELASAS-TDSTLRLWDVKE-NLPVRT---FR----------GHMNEKNFVGLTVNSEYIACGSE-SNEVYVY 121 (179)
Q Consensus 59 ~~~~~~-~~l~~~~-~d~~v~iwd~~~-~~~~~~---~~----------~~~~~v~~~~~~~~~~~~~~~~~-d~~v~vw 121 (179)
++++|+ ++++++. .++.|.++++.. +..... +. .......++.++|+++++++... ...|.+|
T Consensus 92 i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~ 171 (345)
T PF10282_consen 92 IAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVY 171 (345)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEE
T ss_pred EEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEE
Confidence 778888 7777766 588999999986 332221 21 11244678999999998876533 4579999
Q ss_pred EcCCCcc-c-cccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeC-CCcEEEEeec
Q 038439 122 HKEISKP-V-TWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANS-QGTIKVLVLA 178 (179)
Q Consensus 122 d~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~ 178 (179)
++..... + .......+ . ....+.+.|+|+++++++... ++.|.++++.
T Consensus 172 ~~~~~~~~l~~~~~~~~~--------~-G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~ 222 (345)
T PF10282_consen 172 DIDDDTGKLTPVDSIKVP--------P-GSGPRHLAFSPDGKYAYVVNELSNTVSVFDYD 222 (345)
T ss_dssp EE-TTS-TEEEEEEEECS--------T-TSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred EEeCCCceEEEeeccccc--------c-CCCCcEEEEcCCcCEEEEecCCCCcEEEEeec
Confidence 9977542 2 11111101 0 567899999999998877665 7789998875
No 269
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.99 E-value=1.1e-07 Score=68.92 Aligned_cols=74 Identities=15% Similarity=0.205 Sum_probs=61.0
Q ss_pred cccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCC
Q 038439 51 GHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEIS 126 (179)
Q Consensus 51 ~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~ 126 (179)
.....+.+.+++|+ ..++.|+.||.|.+||...+. ..+....-.+..++|+|+|..+++|+..|.+.+||+.-+
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~--t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGV--TLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCe--eeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 35567889999999 999999999999999987653 222223445788999999999999999999999998654
No 270
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.99 E-value=3.8e-09 Score=69.22 Aligned_cols=121 Identities=17% Similarity=0.182 Sum_probs=82.0
Q ss_pred CceeEEEEeeC--CeEEEecCCCcEEEEecCCC-cceeeecCCCCCeEEEEEee-CCCEEEEeccCCcEEEEEcCCCccc
Q 038439 54 KAVSYVKFLSN--DELASASTDSTLRLWDVKEN-LPVRTFRGHMNEKNFVGLTV-NSEYIACGSESNEVYVYHKEISKPV 129 (179)
Q Consensus 54 ~~i~~~~~~~~--~~l~~~~~d~~v~iwd~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~d~~v~vwd~~~~~~~ 129 (179)
..|.+++-+|. ..+++|+.||.+.+||.+.. .+...++.|..+++.+.|+| ++..|+++++||.+.-||..+.-.-
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~~l~ 259 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTTFLS 259 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCceEE
Confidence 34888888888 67888999999999999875 34556788999999999999 5788999999999999998742111
Q ss_pred --------cccccCCCCCCCC----cccCCcceEEEEEEccCCCeEEEEeCCCcEEEEe
Q 038439 130 --------TWHRFSSPDMDDT----DEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLV 176 (179)
Q Consensus 130 --------~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd 176 (179)
..+-...+...+. ....-...|+++ .--|..|++|+.-+-|++++
T Consensus 260 i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~Sinsf--DV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 260 ISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSF--DVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred ecCccccccccccCCcccceEeeeccccccceeeeee--eccCceEEeccccceEEEec
Confidence 0000000000000 000002233333 33577899999999998875
No 271
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.98 E-value=1.3e-06 Score=59.89 Aligned_cols=173 Identities=13% Similarity=0.120 Sum_probs=106.3
Q ss_pred CCccEEEEEcCC--ceeEEeec---CCCceeEEEEcCCCCeEEEEe------------CCCcee----eecccCc-----
Q 038439 2 AYGKVKVWCTRQ--EASVLNID---MKANICCVKYNPGSSNYIAKY------------QSTAPC----VHGHKKA----- 55 (179)
Q Consensus 2 ~d~~i~vwd~~~--~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~------------~~~~~~----~~~~~~~----- 55 (179)
++|.|--|.+.. |+....-+ ...+...++++++++.++++. ..+... ...|.+.
T Consensus 62 ~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~r 141 (346)
T COG2706 62 EEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHER 141 (346)
T ss_pred CcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCcc
Confidence 456666666553 44332221 234458899999996665554 112221 3445555
Q ss_pred -----eeEEEEeeC-CeEEEecC-CCcEEEEecCCCccee----eecCCCCCeEEEEEeeCCCEEEEecc-CCcEEEEEc
Q 038439 56 -----VSYVKFLSN-DELASAST-DSTLRLWDVKENLPVR----TFRGHMNEKNFVGLTVNSEYIACGSE-SNEVYVYHK 123 (179)
Q Consensus 56 -----i~~~~~~~~-~~l~~~~~-d~~v~iwd~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~~~~~-d~~v~vwd~ 123 (179)
+....+.|+ +++++... -..|.+|++..+++.. .+ ......+.|.|+|++++.+..++ +++|.+|..
T Consensus 142 Q~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y 220 (346)
T COG2706 142 QESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEY 220 (346)
T ss_pred ccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCcccccccccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEE
Confidence 778889999 67777653 4479999999775432 22 23456789999999999766554 899999998
Q ss_pred CCC-ccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeC-CCcEEEEeec
Q 038439 124 EIS-KPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANS-QGTIKVLVLA 178 (179)
Q Consensus 124 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~ 178 (179)
... ..+..++.-.. +... ..+......+..++||++|+++.. ...|-+|.+.
T Consensus 221 ~~~~g~~~~lQ~i~t-lP~d--F~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~ 274 (346)
T COG2706 221 NPAVGKFEELQTIDT-LPED--FTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVD 274 (346)
T ss_pred cCCCceEEEeeeecc-Cccc--cCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 873 22111111000 0001 112556778899999999998776 2356666543
No 272
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.98 E-value=4e-07 Score=65.93 Aligned_cols=157 Identities=4% Similarity=-0.022 Sum_probs=90.2
Q ss_pred cEEEEEcCCceeEEeecCCCceeEEEEcCCCCe-EEEEe-C------------CCcee-eecccCceeEEEEeeC-CeEE
Q 038439 5 KVKVWCTRQEASVLNIDMKANICCVKYNPGSSN-YIAKY-Q------------STAPC-VHGHKKAVSYVKFLSN-DELA 68 (179)
Q Consensus 5 ~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~-~------------~~~~~-~~~~~~~i~~~~~~~~-~~l~ 68 (179)
.|.+-|............ +......|+|+|+. ++.+. . +++.. +....+......|+|| ..++
T Consensus 170 ~l~~~d~dg~~~~~~~~~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la 248 (419)
T PRK04043 170 NIVLADYTLTYQKVIVKG-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLL 248 (419)
T ss_pred eEEEECCCCCceeEEccC-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEE
Confidence 344445443332222233 47889999999975 44444 1 11111 2223344556789999 5544
Q ss_pred -EecCC--CcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEecc-CC--cEEEEEcCCCccccccccCCCCCCCC
Q 038439 69 -SASTD--STLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSE-SN--EVYVYHKEISKPVTWHRFSSPDMDDT 142 (179)
Q Consensus 69 -~~~~d--~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-d~--~v~vwd~~~~~~~~~~~~~~~~~~~~ 142 (179)
+.+.+ ..|.++|+..++ ...+..+........|+|||+.|+..+. .+ .|.+.|+.+++...... .
T Consensus 249 ~~~~~~g~~~Iy~~dl~~g~-~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~-~------- 319 (419)
T PRK04043 249 LTMAPKGQPDIYLYDTNTKT-LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF-H------- 319 (419)
T ss_pred EEEccCCCcEEEEEECCCCc-EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc-C-------
Confidence 44434 467777887765 3444433333345689999988765543 23 57788887766532211 1
Q ss_pred cccCCcceEEEEEEccCCCeEEEEeCC---------CcEEEEeec
Q 038439 143 DEDAGSYFISAVCWKSDSPTMLTANSQ---------GTIKVLVLA 178 (179)
Q Consensus 143 ~~~~~~~~i~~~~~~~~~~~l~~~~~d---------g~i~iwd~~ 178 (179)
.. ....|+|+|+.|+..... ..|.+.|+.
T Consensus 320 -----g~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~ 357 (419)
T PRK04043 320 -----GK--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTN 357 (419)
T ss_pred -----CC--cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECC
Confidence 11 124899999988776653 256666654
No 273
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.97 E-value=2.8e-07 Score=66.62 Aligned_cols=122 Identities=16% Similarity=0.154 Sum_probs=97.6
Q ss_pred CCccEEEEEcCCceeEEeec---CCCceeEEEEcCCCCeEEEEeCC----------Ccee--eecccCceeEEEEeeC-C
Q 038439 2 AYGKVKVWCTRQEASVLNID---MKANICCVKYNPGSSNYIAKYQS----------TAPC--VHGHKKAVSYVKFLSN-D 65 (179)
Q Consensus 2 ~d~~i~vwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~----------~~~~--~~~~~~~i~~~~~~~~-~ 65 (179)
..|.|-+|++..++.-..+. |.++|.++.++.+-..+..+|.. .+.+ ..+....+.+++++|| .
T Consensus 78 ~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~ 157 (541)
T KOG4547|consen 78 PQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGK 157 (541)
T ss_pred CCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCC
Confidence 35789999999998877774 88999999999888777777722 2222 5556667888999999 8
Q ss_pred eEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeC-----CCEEEEe-ccCCcEEEEEcCC
Q 038439 66 ELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVN-----SEYIACG-SESNEVYVYHKEI 125 (179)
Q Consensus 66 ~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~-~~d~~v~vwd~~~ 125 (179)
.+++++ +.|++||+++++.+..|.+|.++|+++.|-.+ |.+++++ ..+..+.+|-++.
T Consensus 158 ~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 158 ILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred EEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 888887 58999999999999999999999999999876 7776654 4466678887765
No 274
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.96 E-value=5.5e-07 Score=60.04 Aligned_cols=153 Identities=14% Similarity=0.104 Sum_probs=90.9
Q ss_pred eeEEEEcCCCCeEEEEeCC----------Ccee--eec-------ccCceeEEEEeeC-------CeEEEecCCCcEEEE
Q 038439 26 ICCVKYNPGSSNYIAKYQS----------TAPC--VHG-------HKKAVSYVKFLSN-------DELASASTDSTLRLW 79 (179)
Q Consensus 26 v~~~~~~~~~~~~~~~~~~----------~~~~--~~~-------~~~~i~~~~~~~~-------~~l~~~~~d~~v~iw 79 (179)
=+-++||||+ .++|.++. +..+ +.. -...|..+.|.+- ..|+.-...|.++-|
T Consensus 46 WRkl~WSpD~-tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy 124 (282)
T PF15492_consen 46 WRKLAWSPDC-TLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY 124 (282)
T ss_pred heEEEECCCC-cEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence 4679999998 56666521 1222 111 1234555555432 256667777777776
Q ss_pred ecCC-----Ccceeeec--C-CCCCeEEEEEeeCCCEEEEecc-CC----------cEEEEEcCCCccccccccCC--CC
Q 038439 80 DVKE-----NLPVRTFR--G-HMNEKNFVGLTVNSEYIACGSE-SN----------EVYVYHKEISKPVTWHRFSS--PD 138 (179)
Q Consensus 80 d~~~-----~~~~~~~~--~-~~~~v~~~~~~~~~~~~~~~~~-d~----------~v~vwd~~~~~~~~~~~~~~--~~ 138 (179)
-+.. .+....+. . ....|.++.++|..+.|++|+. .. -+..|.+-++.+........ ..
T Consensus 125 ~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~ 204 (282)
T PF15492_consen 125 LVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDI 204 (282)
T ss_pred EEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccc
Confidence 6532 22233332 2 3668999999998888776653 11 26678776654432211100 00
Q ss_pred -----------CCC----CcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439 139 -----------MDD----TDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA 179 (179)
Q Consensus 139 -----------~~~----~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 179 (179)
... .........|..|..+|||+.|++...+|.|.+|++.+
T Consensus 205 ~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPs 260 (282)
T PF15492_consen 205 TASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPS 260 (282)
T ss_pred cccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCc
Confidence 000 00111256799999999999999999999999999863
No 275
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.94 E-value=2.3e-09 Score=79.44 Aligned_cols=118 Identities=18% Similarity=0.365 Sum_probs=91.4
Q ss_pred eecccCceeEEEEeeC--CeEEEecCCCcEEEEecCCC-cceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCC
Q 038439 49 VHGHKKAVSYVKFLSN--DELASASTDSTLRLWDVKEN-LPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEI 125 (179)
Q Consensus 49 ~~~~~~~i~~~~~~~~--~~l~~~~~d~~v~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~ 125 (179)
+.+|...|+.+.|+|. ..+++++-|..+..||+++. .++..+.........++|+-....+.+.+..+.|.+||++.
T Consensus 110 lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~ 189 (1081)
T KOG0309|consen 110 LHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRK 189 (1081)
T ss_pred EecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccC
Confidence 7899999999999999 78999999999999999974 45556655666678899998655566667778899999997
Q ss_pred Cc-cccccccCCCCCCCCcccCCcceEEEEEEcc-CCCeEEEEeCCCcEEEEeec
Q 038439 126 SK-PVTWHRFSSPDMDDTDEDAGSYFISAVCWKS-DSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 126 ~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~ 178 (179)
+. ++...+. + -..++.+.|.. ....+++.+.|++|+.||..
T Consensus 190 gs~pl~s~K~--~----------vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~ 232 (1081)
T KOG0309|consen 190 GSTPLCSLKG--H----------VSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYS 232 (1081)
T ss_pred CCcceEEecc--c----------ceeeehHHHhhhhhhhhcccCCCCceeeeccc
Confidence 64 3433321 1 55677787765 34567889999999999854
No 276
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.93 E-value=4.7e-09 Score=75.79 Aligned_cols=134 Identities=17% Similarity=0.167 Sum_probs=93.5
Q ss_pred CCCccEEEEEcCC-------ceeEEeec-CCCceeEEEEcCCCCeEEEEeCC---------Ccee----eecccCceeEE
Q 038439 1 MAYGKVKVWCTRQ-------EASVLNID-MKANICCVKYNPGSSNYIAKYQS---------TAPC----VHGHKKAVSYV 59 (179)
Q Consensus 1 ~~d~~i~vwd~~~-------~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~---------~~~~----~~~~~~~i~~~ 59 (179)
|.|.+|++|.++. ..+..+++ |+.+|.++.|-.+-+ .++..+. ++++ -....+.+..+
T Consensus 754 SkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr-~i~ScD~giHlWDPFigr~Laq~~dapk~~a~~~i 832 (1034)
T KOG4190|consen 754 SKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR-SIASCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNI 832 (1034)
T ss_pred cCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc-eeeeccCcceeecccccchhHhhhcCcccCCCcee
Confidence 5799999999763 23566665 899999999988874 4444321 2222 11112223333
Q ss_pred EEeeC---CeE-EEecCCCcEEEEecCCCcceeeec-----CCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCcccc
Q 038439 60 KFLSN---DEL-ASASTDSTLRLWDVKENLPVRTFR-----GHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVT 130 (179)
Q Consensus 60 ~~~~~---~~l-~~~~~d~~v~iwd~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~ 130 (179)
...++ ..+ +.++...+|+++|.+..+....++ +....+++++..+.|+.++++-..|.+.+.|.++|+.+.
T Consensus 833 kcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vIN 912 (1034)
T KOG4190|consen 833 KCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVIN 912 (1034)
T ss_pred EecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceec
Confidence 33343 333 344778999999999877665554 234568899999999999999999999999999999888
Q ss_pred ccccC
Q 038439 131 WHRFS 135 (179)
Q Consensus 131 ~~~~~ 135 (179)
.++..
T Consensus 913 swrpm 917 (1034)
T KOG4190|consen 913 SWRPM 917 (1034)
T ss_pred cCCcc
Confidence 77643
No 277
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.92 E-value=4.5e-07 Score=64.61 Aligned_cols=117 Identities=15% Similarity=0.245 Sum_probs=94.0
Q ss_pred eecccCceeEEEEeeC-CeEEEecCCC-cEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCC
Q 038439 49 VHGHKKAVSYVKFLSN-DELASASTDS-TLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEIS 126 (179)
Q Consensus 49 ~~~~~~~i~~~~~~~~-~~l~~~~~d~-~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~ 126 (179)
.-+|...|.-..+.-+ .-++.|..|| .+-|+|.+.++ +..+...-+.|.++..+|+|++++++.....+.+.|+.++
T Consensus 355 qv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididng 433 (668)
T COG4946 355 QVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE-VKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNG 433 (668)
T ss_pred EcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCce-EEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCC
Confidence 3456777877777777 7788888888 89999999876 4455566788999999999999999999999999999998
Q ss_pred ccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCC----cEEEEeec
Q 038439 127 KPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQG----TIKVLVLA 178 (179)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg----~i~iwd~~ 178 (179)
.....-+.. ..-|+...|+|+++++|-+-.+| .|+++|+.
T Consensus 434 nv~~idkS~------------~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~ 477 (668)
T COG4946 434 NVRLIDKSE------------YGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMD 477 (668)
T ss_pred CeeEecccc------------cceeEEEEEcCCceeEEEecCcceeeeeEEEEecC
Confidence 764332211 56799999999999999877766 48888865
No 278
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.91 E-value=1.5e-08 Score=81.66 Aligned_cols=129 Identities=9% Similarity=0.144 Sum_probs=97.2
Q ss_pred eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCcceeeecC-CCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCC
Q 038439 49 VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRG-HMNEKNFVGLTVNSEYIACGSESNEVYVYHKEIS 126 (179)
Q Consensus 49 ~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~ 126 (179)
++.+-..+.++.-+|. .+.+||+.||.|++|....+..+..++. ..+.++.+.|+.+|+.+..+..||.+.+|... .
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-p 2282 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-P 2282 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-C
Confidence 4444556777777788 8999999999999999988887776652 34778899999999999999999999999876 2
Q ss_pred ccccccccCCC--------------------------------CCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEE
Q 038439 127 KPVTWHRFSSP--------------------------------DMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKV 174 (179)
Q Consensus 127 ~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 174 (179)
++...++.... .+.-.....|.+.++++++.|..+.|++|+.+|.|++
T Consensus 2283 k~~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l 2362 (2439)
T KOG1064|consen 2283 KPYTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCL 2362 (2439)
T ss_pred cceeccccCCccccceeeeehhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEE
Confidence 22221111000 1111112345788999999999999999999999999
Q ss_pred Eeec
Q 038439 175 LVLA 178 (179)
Q Consensus 175 wd~~ 178 (179)
||++
T Consensus 2363 ~D~r 2366 (2439)
T KOG1064|consen 2363 FDIR 2366 (2439)
T ss_pred eehH
Confidence 9985
No 279
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.90 E-value=8.7e-07 Score=58.78 Aligned_cols=117 Identities=5% Similarity=-0.024 Sum_probs=83.2
Q ss_pred eeEEEEeeC-CeEEEecCCCcEEEEecCC-Ccceee--ecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccc
Q 038439 56 VSYVKFLSN-DELASASTDSTLRLWDVKE-NLPVRT--FRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTW 131 (179)
Q Consensus 56 i~~~~~~~~-~~l~~~~~d~~v~iwd~~~-~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~ 131 (179)
+.+++++++ .++++.+....|-.|.+.. ++.+.. .......-.+..|+.....+|++..||++.|||++.......
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~ 240 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMA 240 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchh
Confidence 778899999 8888888889999998864 332222 222333456788999999999999999999999997544332
Q ss_pred cccCCCCCCCCcccCCcceEEEEEEccCCC--eEEEEeCCCcEEEEeecC
Q 038439 132 HRFSSPDMDDTDEDAGSYFISAVCWKSDSP--TMLTANSQGTIKVLVLAA 179 (179)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~dg~i~iwd~~~ 179 (179)
.... ...+|.+.+..+.|++-|. +|+..-.=+.+++.|+++
T Consensus 241 ~~ss-------trp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~ 283 (344)
T KOG4532|consen 241 EISS-------TRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRN 283 (344)
T ss_pred hhcc-------cCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEccc
Confidence 2211 1234588999999998553 455555556788888764
No 280
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.87 E-value=2.1e-08 Score=74.46 Aligned_cols=144 Identities=17% Similarity=0.240 Sum_probs=109.7
Q ss_pred cCCCceeEEEEcCCCCeEEEEe-------------------CCC----cee-----eecccCceeEEEEeeC-CeEEEec
Q 038439 21 DMKANICCVKYNPGSSNYIAKY-------------------QST----APC-----VHGHKKAVSYVKFLSN-DELASAS 71 (179)
Q Consensus 21 ~~~~~v~~~~~~~~~~~~~~~~-------------------~~~----~~~-----~~~~~~~i~~~~~~~~-~~l~~~~ 71 (179)
+.+....+++|+... .++++| ..+ ..+ +.+|++.|..+.|+.. +.|-++.
T Consensus 12 PnnvkL~c~~WNke~-gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSD 90 (1189)
T KOG2041|consen 12 PNNVKLHCAEWNKES-GYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSD 90 (1189)
T ss_pred CCCceEEEEEEcccC-CeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccC
Confidence 345667899999887 455555 011 111 7899999999999998 8888888
Q ss_pred CCCcEEEEecCCCcceeeecC--CCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcc
Q 038439 72 TDSTLRLWDVKENLPVRTFRG--HMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSY 149 (179)
Q Consensus 72 ~d~~v~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (179)
.+|.|.+|-+-.+.....+.. ..+.|.+++|+.+|..|....+||.|.+=.+...+ +.-..+. ..
T Consensus 91 t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNR-IwgKeLk------------g~ 157 (1189)
T KOG2041|consen 91 TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNR-IWGKELK------------GQ 157 (1189)
T ss_pred CCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccce-ecchhcc------------hh
Confidence 999999999988765544432 45678999999999999999999999887776443 3222332 33
Q ss_pred eEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439 150 FISAVCWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 150 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
....+.|++|.+.++.+-..|.+++||.+
T Consensus 158 ~l~hv~ws~D~~~~Lf~~ange~hlydnq 186 (1189)
T KOG2041|consen 158 LLAHVLWSEDLEQALFKKANGETHLYDNQ 186 (1189)
T ss_pred eccceeecccHHHHHhhhcCCcEEEeccc
Confidence 45678899999999889999999999853
No 281
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.86 E-value=5.9e-09 Score=75.28 Aligned_cols=129 Identities=18% Similarity=0.252 Sum_probs=92.8
Q ss_pred eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCC-------CcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEE
Q 038439 49 VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKE-------NLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYV 120 (179)
Q Consensus 49 ~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~v 120 (179)
+.+|...|..+.-..+ +-+++++.|++|++|.++. ..+..++..|..+|..+.|-.+.++++++ ||-+++
T Consensus 731 f~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHl 808 (1034)
T KOG4190|consen 731 FTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHL 808 (1034)
T ss_pred ccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCccee
Confidence 7889999988876666 8999999999999999874 13556788899999999999998888755 788999
Q ss_pred EEcCCCccccccccCCC---------------------------------C-----CCCCcc--cCCcceEEEEEEccCC
Q 038439 121 YHKEISKPVTWHRFSSP---------------------------------D-----MDDTDE--DAGSYFISAVCWKSDS 160 (179)
Q Consensus 121 wd~~~~~~~~~~~~~~~---------------------------------~-----~~~~~~--~~~~~~i~~~~~~~~~ 160 (179)
||.--++++........ . .+.... .....-+.+++..+.|
T Consensus 809 WDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~G 888 (1034)
T KOG4190|consen 809 WDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKG 888 (1034)
T ss_pred ecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCc
Confidence 99766655442221110 0 000000 0012346677888889
Q ss_pred CeEEEEeCCCcEEEEeecC
Q 038439 161 PTMLTANSQGTIKVLVLAA 179 (179)
Q Consensus 161 ~~l~~~~~dg~i~iwd~~~ 179 (179)
++++++-..|.|.+.|.++
T Consensus 889 N~lAa~LSnGci~~LDaR~ 907 (1034)
T KOG4190|consen 889 NKLAAALSNGCIAILDARN 907 (1034)
T ss_pred chhhHHhcCCcEEEEecCC
Confidence 9999998899988888664
No 282
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.86 E-value=4.4e-08 Score=70.97 Aligned_cols=107 Identities=12% Similarity=0.245 Sum_probs=76.0
Q ss_pred eEEEEeeC--CeEEEe----cCCCc----EEEEecCCCcce----eeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEE
Q 038439 57 SYVKFLSN--DELASA----STDST----LRLWDVKENLPV----RTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYH 122 (179)
Q Consensus 57 ~~~~~~~~--~~l~~~----~~d~~----v~iwd~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd 122 (179)
.++.|+-. ..+.+. +.+|. -++|++...+.. ..+ ...+.+.+.+++|+.+.++.|+.||.|.+||
T Consensus 209 l~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsi-pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD 287 (545)
T PF11768_consen 209 LDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSI-PLPSQVICCARSPSEDKLVLGCEDGSIILYD 287 (545)
T ss_pred EEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEE-ecCCcceEEecCcccceEEEEecCCeEEEEE
Confidence 45666654 444432 33443 345666544321 122 3467889999999999999999999999999
Q ss_pred cCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439 123 KEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
...+.-... .. .-.++.++|+|+|..+++|+..|.+.+||+.
T Consensus 288 ~~~~~t~~~-ka-------------~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 288 TTRGVTLLA-KA-------------EFIPTLIAWHPDGAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred cCCCeeeee-ee-------------cccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence 876533222 11 4457889999999999999999999999974
No 283
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.83 E-value=9.7e-07 Score=69.59 Aligned_cols=113 Identities=10% Similarity=0.106 Sum_probs=74.6
Q ss_pred ceeEEEEeeC-CeEEEecC---C---CcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEecc---CCcEEEEEcC
Q 038439 55 AVSYVKFLSN-DELASAST---D---STLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSE---SNEVYVYHKE 124 (179)
Q Consensus 55 ~i~~~~~~~~-~~l~~~~~---d---~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---d~~v~vwd~~ 124 (179)
.-..|+|-.| .++++.+. . ..+|||+-+ |++...-..-.+--..++|.|.|++||+... ...|.+|..
T Consensus 211 ~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr- 288 (928)
T PF04762_consen 211 GRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER- 288 (928)
T ss_pred CceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec-
Confidence 3456889999 78777664 2 579999965 6544433333333457899999999998764 334555553
Q ss_pred CCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439 125 ISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
+|-.-..+.+... .....|..+.|++++..|+....|. |.+|-..
T Consensus 289 NGLrhgeF~l~~~--------~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~ 333 (928)
T PF04762_consen 289 NGLRHGEFTLRFD--------PEEEKVIELAWNSDSEILAVWLEDR-VQLWTRS 333 (928)
T ss_pred CCcEeeeEecCCC--------CCCceeeEEEECCCCCEEEEEecCC-ceEEEee
Confidence 3433333333210 1156789999999999999987665 9999764
No 284
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.82 E-value=1.4e-07 Score=71.73 Aligned_cols=157 Identities=13% Similarity=0.168 Sum_probs=108.5
Q ss_pred cEEEEEcCCceeEEeecCC-CceeEEEEcCCCCeEEEEe-----------CCCcee--eecccCceeEEEEeeCCeEEEe
Q 038439 5 KVKVWCTRQEASVLNIDMK-ANICCVKYNPGSSNYIAKY-----------QSTAPC--VHGHKKAVSYVKFLSNDELASA 70 (179)
Q Consensus 5 ~i~vwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~-----------~~~~~~--~~~~~~~i~~~~~~~~~~l~~~ 70 (179)
.+..+|+++.+..+..... +.|.-++.+. +++.+| ++.+.+ +.+|++.|..+.... +.|+++
T Consensus 158 ~li~~Dl~~~~e~r~~~v~a~~v~imR~Nn---r~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv~G-NlLitC 233 (1118)
T KOG1275|consen 158 KLIHIDLNTEKETRTTNVSASGVTIMRYNN---RNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDVQG-NLLITC 233 (1118)
T ss_pred heeeeecccceeeeeeeccCCceEEEEecC---cEEEeecccceEEeecCCcCceeeeeeccccceeeeeccC-CeEEEe
Confidence 3455666666665555533 3577777653 456666 334445 889999998876643 677777
Q ss_pred cC---------CCcEEEEecCCCcceeeecCCCCCeEEEEEeeC-CCEEEEeccCCcEEEEEcCC-Ccc-ccccccCCCC
Q 038439 71 ST---------DSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVN-SEYIACGSESNEVYVYHKEI-SKP-VTWHRFSSPD 138 (179)
Q Consensus 71 ~~---------d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~d~~v~vwd~~~-~~~-~~~~~~~~~~ 138 (179)
+. |..|+|||++.-+.+..+.-+..+ ..+.|.|. ...+++++..|+..+-|..+ +.+ ...+.....
T Consensus 234 G~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~- 311 (1118)
T KOG1275|consen 234 GYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPN- 311 (1118)
T ss_pred ecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccC-
Confidence 53 567899999988777766554443 56788886 55688888899999999433 222 111211111
Q ss_pred CCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEe
Q 038439 139 MDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLV 176 (179)
Q Consensus 139 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd 176 (179)
+..+..++++++++.++.|..+|.|.+|-
T Consensus 312 ---------~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 312 ---------GSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ---------CCcceeEEecCCCceEEEecccCcEeeec
Confidence 55699999999999999999999999995
No 285
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.82 E-value=9.3e-08 Score=71.18 Aligned_cols=111 Identities=13% Similarity=0.167 Sum_probs=91.2
Q ss_pred CceeEEEEeeC-CeEEEecCCCcEEEEecCCCc---------------ceeeecCCCCCeEEEEEeeCCCEEEEeccCCc
Q 038439 54 KAVSYVKFLSN-DELASASTDSTLRLWDVKENL---------------PVRTFRGHMNEKNFVGLTVNSEYIACGSESNE 117 (179)
Q Consensus 54 ~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~---------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~ 117 (179)
....|++|+.. ++++.|+.||.+++..+.+.. .-+++.+|...|.-+.|+.+.+.+-+...+|.
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~Gl 94 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGL 94 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCce
Confidence 45789999999 999999999999998776421 12457789999999999999999999999999
Q ss_pred EEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEE
Q 038439 118 VYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKV 174 (179)
Q Consensus 118 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 174 (179)
|.+|-+-.+.-......... .+.|.+++|+.+|..+.....||.|.+
T Consensus 95 IiVWmlykgsW~EEMiNnRn----------KSvV~SmsWn~dG~kIcIvYeDGavIV 141 (1189)
T KOG2041|consen 95 IIVWMLYKGSWCEEMINNRN----------KSVVVSMSWNLDGTKICIVYEDGAVIV 141 (1189)
T ss_pred EEEEeeecccHHHHHhhCcC----------ccEEEEEEEcCCCcEEEEEEccCCEEE
Confidence 99999988875544433222 678999999999999998888887755
No 286
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.80 E-value=1.1e-08 Score=69.57 Aligned_cols=115 Identities=9% Similarity=0.095 Sum_probs=83.7
Q ss_pred cCceeEEEEeeC-CeEEEecCCCcEEEEecCCC-----cceeeecCCCCCeEEEEEee-CCCEEEEeccCCcEEEEEcCC
Q 038439 53 KKAVSYVKFLSN-DELASASTDSTLRLWDVKEN-----LPVRTFRGHMNEKNFVGLTV-NSEYIACGSESNEVYVYHKEI 125 (179)
Q Consensus 53 ~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~-----~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~d~~v~vwd~~~ 125 (179)
...|.++.|... ++++.|+..|.|...|++.+ .+.+.+. |.+.|+++..-. +++++++.+.+|+|++||++.
T Consensus 252 ksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~ 330 (425)
T KOG2695|consen 252 KSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRA 330 (425)
T ss_pred chhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhhhhhccccceEeeccCcCceeEeeehh
Confidence 345666777776 89999999999999999864 3444443 788888887554 688999999999999999998
Q ss_pred Ccc---ccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439 126 SKP---VTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 126 ~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
-+. +.+++ .|.. ...-.-+...+....+++++.|-..+||.+.
T Consensus 331 ~K~~~~V~qYe--GHvN--------~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~ 376 (425)
T KOG2695|consen 331 TKCKKSVMQYE--GHVN--------LSAYLPAHVKEEEGSIFSVGDDCYTRIWSLD 376 (425)
T ss_pred hhcccceeeee--cccc--------cccccccccccccceEEEccCeeEEEEEecc
Confidence 666 44432 2211 1111223345677788889999999999876
No 287
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.79 E-value=7.7e-07 Score=66.13 Aligned_cols=171 Identities=9% Similarity=-0.017 Sum_probs=109.7
Q ss_pred CccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe---CCCcee--eecccCceeEEEEee--------C-CeEE
Q 038439 3 YGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY---QSTAPC--VHGHKKAVSYVKFLS--------N-DELA 68 (179)
Q Consensus 3 d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~i~~~~~~~--------~-~~l~ 68 (179)
.+.+.+.|.++.+...++.......-++++|+|..+++++ ..+..+ +...... ..+.|++ + .+..
T Consensus 214 ~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d-~~vvfni~~iea~vkdGK~~~ 292 (635)
T PRK02888 214 RSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERD-WVVVFNIARIEEAVKAGKFKT 292 (635)
T ss_pred eEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCc-eEEEEchHHHHHhhhCCCEEE
Confidence 3567788888888888887777888999999998887876 223333 2222211 3334433 3 2222
Q ss_pred EecCCCcEEEEecCC-----CcceeeecCCCCCeEEEEEeeCCCEEEEec-cCCcEEEEEcCCCccccccccCCCCCCCC
Q 038439 69 SASTDSTLRLWDVKE-----NLPVRTFRGHMNEKNFVGLTVNSEYIACGS-ESNEVYVYHKEISKPVTWHRFSSPDMDDT 142 (179)
Q Consensus 69 ~~~~d~~v~iwd~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~d~~v~vwd~~~~~~~~~~~~~~~~~~~~ 142 (179)
. .++.|.+.|.++ .+.+..+. -......++++|||+++++++ .+..|.|.|+.+.+....-++........
T Consensus 293 V--~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vva 369 (635)
T PRK02888 293 I--GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVA 369 (635)
T ss_pred E--CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEE
Confidence 2 356899999987 34444443 345568899999999977655 48999999998865422111111000000
Q ss_pred cccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439 143 DEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 143 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
...- .......+|.++|+...+-.-|..|..||+.
T Consensus 370 evev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~ 404 (635)
T PRK02888 370 EPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIE 404 (635)
T ss_pred eecc-CCCcceEEECCCCCEEEeEeecceeEEEehH
Confidence 0001 3345668899999988888889999999975
No 288
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.76 E-value=9.6e-06 Score=65.18 Aligned_cols=119 Identities=13% Similarity=0.117 Sum_probs=76.1
Q ss_pred eEEEEeeC--CeEEEecCCCcEEEEecCCCcceeeecC---------------CCCCeEEEEEeeCCCEE-EEeccCCcE
Q 038439 57 SYVKFLSN--DELASASTDSTLRLWDVKENLPVRTFRG---------------HMNEKNFVGLTVNSEYI-ACGSESNEV 118 (179)
Q Consensus 57 ~~~~~~~~--~~l~~~~~d~~v~iwd~~~~~~~~~~~~---------------~~~~v~~~~~~~~~~~~-~~~~~d~~v 118 (179)
..++++|+ ..+++.+.++.|++||..++... .+.+ .-.....++++|++..+ ++-..++.|
T Consensus 686 ~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~I 764 (1057)
T PLN02919 686 WDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSI 764 (1057)
T ss_pred eEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeE
Confidence 57899995 55667778899999998776432 2211 01234579999998854 555667999
Q ss_pred EEEEcCCCcccccc-----------ccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439 119 YVYHKEISKPVTWH-----------RFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 119 ~vwd~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
++||+.++...... .+....... ..........++++++|+.+++-+.+++|++||..
T Consensus 765 rv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g--~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~ 833 (1057)
T PLN02919 765 RALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVG--SEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPA 833 (1057)
T ss_pred EEEECCCCcEEEEEecccccCcccccccCCCCch--hhhhccCCceeeEeCCCcEEEEECCCCEEEEEECC
Confidence 99999876532111 000000000 00001234688999999988888889999999975
No 289
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.73 E-value=7.2e-08 Score=65.77 Aligned_cols=127 Identities=13% Similarity=0.132 Sum_probs=85.2
Q ss_pred eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCccee---eecCC-----CCCeEEEEEeeC-CCEEEEeccCCcE
Q 038439 49 VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVR---TFRGH-----MNEKNFVGLTVN-SEYIACGSESNEV 118 (179)
Q Consensus 49 ~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~---~~~~~-----~~~v~~~~~~~~-~~~~~~~~~d~~v 118 (179)
-.+|+-.|+++.++.| ..+++ +.|-.|.+|++.-...-. .++.+ ...|++..|+|. .+.++..+..|.|
T Consensus 160 aNaHtyhiNSIS~NsD~Et~lS-ADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtI 238 (433)
T KOG1354|consen 160 ANAHTYHINSISVNSDKETFLS-ADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTI 238 (433)
T ss_pred cccceeEeeeeeecCccceEee-ccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcE
Confidence 5678999999999999 66555 557889999987533222 22222 346788899995 6677778889999
Q ss_pred EEEEcCCCcccc----cccc-CCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439 119 YVYHKEISKPVT----WHRF-SSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 119 ~vwd~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
++-|++...... .++. ..+.....+.+. -..|..+.|+++|+++++-..- +|++||++
T Consensus 239 rLcDmR~~aLCd~hsKlfEepedp~~rsffsei-IsSISDvKFs~sGryilsRDyl-tvk~wD~n 301 (433)
T KOG1354|consen 239 RLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEI-ISSISDVKFSHSGRYILSRDYL-TVKLWDLN 301 (433)
T ss_pred EEeechhhhhhcchhhhhccccCCcchhhHHHH-hhhhhceEEccCCcEEEEeccc-eeEEEecc
Confidence 999999643321 1111 111111111111 3568889999999999876544 79999984
No 290
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.71 E-value=7.9e-06 Score=54.72 Aligned_cols=132 Identities=11% Similarity=0.078 Sum_probs=80.7
Q ss_pred CCccEEEEEcCCceeEEeecCCCceeEEE--EcCCCCeEEEEe----------CCCcee--eecccCceeEEEEeeCCeE
Q 038439 2 AYGKVKVWCTRQEASVLNIDMKANICCVK--YNPGSSNYIAKY----------QSTAPC--VHGHKKAVSYVKFLSNDEL 67 (179)
Q Consensus 2 ~d~~i~vwd~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~~~~----------~~~~~~--~~~~~~~i~~~~~~~~~~l 67 (179)
++|+|..||..+++.+............. ..+++..+++.. .+++.+ ... ...+.......++.+
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~~~~~~v 79 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPVVDGGRV 79 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEEEETTEE
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceeeeccccc
Confidence 57999999999999988886532222222 222333555553 345554 221 222211122233667
Q ss_pred EEecCCCcEEEEecCCCcceeee-cCCC---CCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCcccccccc
Q 038439 68 ASASTDSTLRLWDVKENLPVRTF-RGHM---NEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRF 134 (179)
Q Consensus 68 ~~~~~d~~v~iwd~~~~~~~~~~-~~~~---~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~ 134 (179)
+.++.++.+..+|..+++.+... .... ...........+..++.+..++.|..+|+++|+.+.....
T Consensus 80 ~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~ 150 (238)
T PF13360_consen 80 YVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPV 150 (238)
T ss_dssp EEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEES
T ss_pred ccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeec
Confidence 77778889999999999988774 3221 1122333444588888888899999999999988666554
No 291
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=2.4e-07 Score=67.79 Aligned_cols=92 Identities=13% Similarity=0.117 Sum_probs=73.7
Q ss_pred CceeEEEEeeC-CeEEEecCCCcEEEEecCCCcceeeecCCCCCeE-EEEEeeCCCEEEEeccCCcEEEEEcCCCccccc
Q 038439 54 KAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRGHMNEKN-FVGLTVNSEYIACGSESNEVYVYHKEISKPVTW 131 (179)
Q Consensus 54 ~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~ 131 (179)
-.|.-+.|+|. .++|++..+|.|-+..+. .+.+.++..+...++ +++|.|||+.+++|-.||+|++.|.+++..+..
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 35677899999 999999999999888887 566777775666666 999999999999999999999999999887766
Q ss_pred cccCCCCCCCCcccCCcceEEEEEEc
Q 038439 132 HRFSSPDMDDTDEDAGSYFISAVCWK 157 (179)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~i~~~~~~ 157 (179)
..+. . ...|.++.|.
T Consensus 100 ~~~s-~----------e~~is~~~w~ 114 (665)
T KOG4640|consen 100 FLFS-V----------ETDISKGIWD 114 (665)
T ss_pred cccc-c----------ccchheeecc
Confidence 3221 1 4456666665
No 292
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.64 E-value=1.1e-05 Score=57.79 Aligned_cols=136 Identities=10% Similarity=0.059 Sum_probs=94.2
Q ss_pred ecCCCceeEEEEcCCCCeEEEEeCCC-----------cee-eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCcc
Q 038439 20 IDMKANICCVKYNPGSSNYIAKYQST-----------APC-VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLP 86 (179)
Q Consensus 20 ~~~~~~v~~~~~~~~~~~~~~~~~~~-----------~~~-~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~ 86 (179)
+.++..|.-..+.-++..++...+.+ +.- +...-+.|.++..+++ .+++.+.....+.+.|+.++..
T Consensus 356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv 435 (668)
T COG4946 356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNV 435 (668)
T ss_pred cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCe
Confidence 44566677777766654333332222 212 4555677899999999 7788888888999999999876
Q ss_pred eeeecCCCCCeEEEEEeeCCCEEEEeccCC----cEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCe
Q 038439 87 VRTFRGHMNEKNFVGLTVNSEYIACGSESN----EVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPT 162 (179)
Q Consensus 87 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~----~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 162 (179)
...=+...+-|....|+|+++++|-+--+| .|+++|+.+++....-.... .=.+-+|.|++++
T Consensus 436 ~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta-------------~DfsPaFD~d~ry 502 (668)
T COG4946 436 RLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTA-------------YDFSPAFDPDGRY 502 (668)
T ss_pred eEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcc-------------cccCcccCCCCcE
Confidence 555455667799999999999999876665 48999999887654433322 2244567788887
Q ss_pred EEEEeC
Q 038439 163 MLTANS 168 (179)
Q Consensus 163 l~~~~~ 168 (179)
|.--+.
T Consensus 503 LYfLs~ 508 (668)
T COG4946 503 LYFLSA 508 (668)
T ss_pred EEEEec
Confidence 765443
No 293
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.64 E-value=1.3e-06 Score=65.69 Aligned_cols=139 Identities=16% Similarity=0.123 Sum_probs=101.4
Q ss_pred CceeEEEEcCCCCeEEEEe----------CCCcee--eecccCceeEEEEeeC-------------CeEEEecCCCcEEE
Q 038439 24 ANICCVKYNPGSSNYIAKY----------QSTAPC--VHGHKKAVSYVKFLSN-------------DELASASTDSTLRL 78 (179)
Q Consensus 24 ~~v~~~~~~~~~~~~~~~~----------~~~~~~--~~~~~~~i~~~~~~~~-------------~~l~~~~~d~~v~i 78 (179)
..-.++.|+|.| +++-| .+-+.+ +..|...|+.++|.|- -.++++...|.|-+
T Consensus 16 sN~~A~Dw~~~G--LiAygshslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil 93 (1062)
T KOG1912|consen 16 SNRNAADWSPSG--LIAYGSHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIIL 93 (1062)
T ss_pred ccccccccCccc--eEEEecCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEE
Confidence 346788999988 55544 333444 7788999999999874 13667777899999
Q ss_pred EecCCCcceeeecCCCCCeEEEEEeeC---C-CEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEE
Q 038439 79 WDVKENLPVRTFRGHMNEKNFVGLTVN---S-EYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAV 154 (179)
Q Consensus 79 wd~~~~~~~~~~~~~~~~v~~~~~~~~---~-~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 154 (179)
||+..+..+..+..+..++..+.|-+. . ..+++-....++-+|+..+|+....+... .....++
T Consensus 94 ~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys------------~~iLs~f 161 (1062)
T KOG1912|consen 94 VDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYS------------HEILSCF 161 (1062)
T ss_pred EEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccC------------Ccceeee
Confidence 999988888888888888999998763 4 34566666788999999999987665542 3345667
Q ss_pred EEcc-CCCeEEEEeCCCcEEEEe
Q 038439 155 CWKS-DSPTMLTANSQGTIKVLV 176 (179)
Q Consensus 155 ~~~~-~~~~l~~~~~dg~i~iwd 176 (179)
.+.| |.+.+...+..|.+.+-+
T Consensus 162 ~~DPfd~rh~~~l~s~g~vl~~~ 184 (1062)
T KOG1912|consen 162 RVDPFDSRHFCVLGSKGFVLSCK 184 (1062)
T ss_pred eeCCCCcceEEEEccCceEEEEe
Confidence 7777 666666666666665543
No 294
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.63 E-value=1e-06 Score=63.80 Aligned_cols=125 Identities=18% Similarity=0.252 Sum_probs=84.8
Q ss_pred eeEEEEcCCCCeEEEEeCCCcee----------eecccCceeEEEEeeC-CeEEEecC-----------CCcEEEEecCC
Q 038439 26 ICCVKYNPGSSNYIAKYQSTAPC----------VHGHKKAVSYVKFLSN-DELASAST-----------DSTLRLWDVKE 83 (179)
Q Consensus 26 v~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~i~~~~~~~~-~~l~~~~~-----------d~~v~iwd~~~ 83 (179)
=+-+.|||.|.++++.-..|-.+ --.|. .|.-+.|||+ .+|+|=+. ...++|||+++
T Consensus 213 etyv~wSP~GTYL~t~Hk~GI~lWGG~~f~r~~RF~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~t 291 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQGIALWGGESFDRIQRFYHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIAT 291 (698)
T ss_pred eeeEEecCCceEEEEEeccceeeecCccHHHHHhccCC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccc
Confidence 35789999996555443322222 11243 4788999999 99988653 25789999999
Q ss_pred CcceeeecCC--CCCe-EEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCC
Q 038439 84 NLPVRTFRGH--MNEK-NFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDS 160 (179)
Q Consensus 84 ~~~~~~~~~~--~~~v-~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 160 (179)
|...+.|... ...+ .-..||.|++|+|--.. ..|.||+..+..++....+. -..|....|+|.+
T Consensus 292 G~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslk------------i~gIr~FswsP~~ 358 (698)
T KOG2314|consen 292 GLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLK------------ISGIRDFSWSPTS 358 (698)
T ss_pred cchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccC------------CccccCcccCCCc
Confidence 9988887652 2222 24689999999987665 56889987765444333322 4467888888887
Q ss_pred CeEE
Q 038439 161 PTML 164 (179)
Q Consensus 161 ~~l~ 164 (179)
+.||
T Consensus 359 ~llA 362 (698)
T KOG2314|consen 359 NLLA 362 (698)
T ss_pred ceEE
Confidence 7665
No 295
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.62 E-value=1.3e-05 Score=56.50 Aligned_cols=111 Identities=14% Similarity=-0.009 Sum_probs=76.0
Q ss_pred ccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEeCCCceeeecccCceeEEEEeeCCeEEEecCCCcEEEEecCC
Q 038439 4 GKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKYQSTAPCVHGHKKAVSYVKFLSNDELASASTDSTLRLWDVKE 83 (179)
Q Consensus 4 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d~~v~iwd~~~ 83 (179)
++|.+.|..+++.+.++........+ ++|+++.++++.. |. ..+.-|-.+..|.+||..+
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~~-~spDg~~lyva~~-----------------~~--~R~~~G~~~d~V~v~D~~t 86 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNPV-VASDGSFFAHAST-----------------VY--SRIARGKRTDYVEVIDPQT 86 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCcee-ECCCCCEEEEEec-----------------cc--cccccCCCCCEEEEEECcc
Confidence 66777777777777777654444444 7777755544410 00 1222333578899999999
Q ss_pred CcceeeecCCCC-------CeEEEEEeeCCCEEEEec-c-CCcEEEEEcCCCcccccccc
Q 038439 84 NLPVRTFRGHMN-------EKNFVGLTVNSEYIACGS-E-SNEVYVYHKEISKPVTWHRF 134 (179)
Q Consensus 84 ~~~~~~~~~~~~-------~v~~~~~~~~~~~~~~~~-~-d~~v~vwd~~~~~~~~~~~~ 134 (179)
.+.+..+..... ....++++|||+++++.. . +..|.+.|+.+++.+.....
T Consensus 87 ~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v 146 (352)
T TIGR02658 87 HLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV 146 (352)
T ss_pred CcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC
Confidence 998887764222 233789999999988776 3 68999999999998877665
No 296
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=2.2e-06 Score=60.67 Aligned_cols=129 Identities=15% Similarity=0.128 Sum_probs=91.8
Q ss_pred eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCC------Ccceeeec---------CCCCCeEEEEEeeCCCEEEEe
Q 038439 49 VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKE------NLPVRTFR---------GHMNEKNFVGLTVNSEYIACG 112 (179)
Q Consensus 49 ~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~------~~~~~~~~---------~~~~~v~~~~~~~~~~~~~~~ 112 (179)
-.-|..+|.++.+++. ..+++....|.|.-|.... .+....++ .......++.|+|++..+.+-
T Consensus 140 kklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl 219 (558)
T KOG0882|consen 140 KKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTL 219 (558)
T ss_pred cccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCccccc
Confidence 4458999999999999 8888888899999998773 11111222 123456789999999999999
Q ss_pred ccCCcEEEEEcCCCccccccccCCC---------------------CCCCCcccCCcceEEEEEEccCCCeEEEEeCCCc
Q 038439 113 SESNEVYVYHKEISKPVTWHRFSSP---------------------DMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGT 171 (179)
Q Consensus 113 ~~d~~v~vwd~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 171 (179)
+.|..|++++.++++.++.+.-... ..+.....++...-..++|...+++|+-|+-=|
T Consensus 220 ~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g- 298 (558)
T KOG0882|consen 220 NPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG- 298 (558)
T ss_pred CcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-
Confidence 9999999999999987665431111 111122233344556788999999998887765
Q ss_pred EEEEeec
Q 038439 172 IKVLVLA 178 (179)
Q Consensus 172 i~iwd~~ 178 (179)
|++.++.
T Consensus 299 ikvin~~ 305 (558)
T KOG0882|consen 299 IKVINLD 305 (558)
T ss_pred EEEEEee
Confidence 7777664
No 297
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.60 E-value=2.1e-07 Score=69.47 Aligned_cols=108 Identities=19% Similarity=0.337 Sum_probs=83.4
Q ss_pred cCCCceeEEEEcCCCCeEEEEe------------CCCcee--eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCCC-
Q 038439 21 DMKANICCVKYNPGSSNYIAKY------------QSTAPC--VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKEN- 84 (179)
Q Consensus 21 ~~~~~v~~~~~~~~~~~~~~~~------------~~~~~~--~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~- 84 (179)
.|...|+.+-|+|+.+.++++. ....++ ...-......++|+.. ..+++.+....|++||.+.+
T Consensus 112 ghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs 191 (1081)
T KOG0309|consen 112 GHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGS 191 (1081)
T ss_pred cCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCC
Confidence 3788999999999998888887 223333 3333344567889887 77777788889999999875
Q ss_pred cceeeecCCCCCeEEEEEeeC-CCEEEEeccCCcEEEEEcCCCcc
Q 038439 85 LPVRTFRGHMNEKNFVGLTVN-SEYIACGSESNEVYVYHKEISKP 128 (179)
Q Consensus 85 ~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~d~~v~vwd~~~~~~ 128 (179)
.++..+++|...++.++|+.- ...+.+++.|++|+.||......
T Consensus 192 ~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~ 236 (1081)
T KOG0309|consen 192 TPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTT 236 (1081)
T ss_pred cceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccc
Confidence 577888999999999998763 44678899999999999876543
No 298
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.57 E-value=4e-06 Score=60.14 Aligned_cols=121 Identities=11% Similarity=0.175 Sum_probs=80.9
Q ss_pred ccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe-CC---------Ccee-eecccCceeEEEEeeC-CeEEEec
Q 038439 4 GKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY-QS---------TAPC-VHGHKKAVSYVKFLSN-DELASAS 71 (179)
Q Consensus 4 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~---------~~~~-~~~~~~~i~~~~~~~~-~~l~~~~ 71 (179)
.+++|+++....+.....-.++|...+|+|.++.+.++. -. ...+ +......=+.+.|+|. ++++.++
T Consensus 255 snLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~~~~Pe~~rNT~~fsp~~r~il~ag 334 (561)
T COG5354 255 SNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLRFYFPEQKRNTIFFSPHERYILFAG 334 (561)
T ss_pred ceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccceEEecCCcccccccccCcccEEEEec
Confidence 456777766444433345688999999999998776665 11 1112 2233333456778999 8888877
Q ss_pred CC---CcEEEEecCCCccee-eecCCCCCeEEEEEeeCCCEEEEecc------CCcEEEEEcCCC
Q 038439 72 TD---STLRLWDVKENLPVR-TFRGHMNEKNFVGLTVNSEYIACGSE------SNEVYVYHKEIS 126 (179)
Q Consensus 72 ~d---~~v~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~------d~~v~vwd~~~~ 126 (179)
.| |.+-+||......+. .+.+. ...-+.|+|+++++.+... |..++|||+...
T Consensus 335 F~nl~gni~i~~~~~rf~~~~~~~~~--n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~ 397 (561)
T COG5354 335 FDNLQGNIEIFDPAGRFKVAGAFNGL--NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGA 397 (561)
T ss_pred CCccccceEEeccCCceEEEEEeecC--CceEeeccCCceEEEecCCCcccccCcceEEEEecCc
Confidence 65 579999987654443 55432 2345789999999877633 778999998654
No 299
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.57 E-value=6.7e-05 Score=51.55 Aligned_cols=168 Identities=9% Similarity=0.042 Sum_probs=102.6
Q ss_pred cEEEEEcCCceeEEeecCCCc---eeEEEEcCCCCeEEEEe---------------C-CCcee--eecccCceeEEEEee
Q 038439 5 KVKVWCTRQEASVLNIDMKAN---ICCVKYNPGSSNYIAKY---------------Q-STAPC--VHGHKKAVSYVKFLS 63 (179)
Q Consensus 5 ~i~vwd~~~~~~~~~~~~~~~---v~~~~~~~~~~~~~~~~---------------~-~~~~~--~~~~~~~i~~~~~~~ 63 (179)
...+||..+++....+..... --.-.|+|+|+.++++- . .-+.+ +..|.-.-..+.+.|
T Consensus 29 ~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~p 108 (305)
T PF07433_consen 29 FALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMP 108 (305)
T ss_pred EEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcC
Confidence 457889999988877753221 33678999997777765 1 11222 333433345677788
Q ss_pred C-CeEEEec------------------CCCcEEEEecCCCcceeeec----CCCCCeEEEEEeeCCCEEEEeccCCc---
Q 038439 64 N-DELASAS------------------TDSTLRLWDVKENLPVRTFR----GHMNEKNFVGLTVNSEYIACGSESNE--- 117 (179)
Q Consensus 64 ~-~~l~~~~------------------~d~~v~iwd~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~d~~--- 117 (179)
+ ..|+.+. ++..+...|..+++.+.+.. .|...++.+++.++|..++.....|.
T Consensus 109 DG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~ 188 (305)
T PF07433_consen 109 DGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGD 188 (305)
T ss_pred CCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCc
Confidence 8 4666542 23345566778888776633 36778999999999987766544432
Q ss_pred ----EEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeC-CCcEEEEeecC
Q 038439 118 ----VYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANS-QGTIKVLVLAA 179 (179)
Q Consensus 118 ----v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~~ 179 (179)
|-+++ .++.+..+...... .. .-...+-++++++++..+++.+- .+.+.+||..+
T Consensus 189 ~~PLva~~~--~g~~~~~~~~p~~~---~~--~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~t 248 (305)
T PF07433_consen 189 APPLVALHR--RGGALRLLPAPEEQ---WR--RLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAAT 248 (305)
T ss_pred cCCeEEEEc--CCCcceeccCChHH---HH--hhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCC
Confidence 33333 23323222221110 00 00457889999999988866555 77899998754
No 300
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.53 E-value=2e-07 Score=61.44 Aligned_cols=72 Identities=11% Similarity=0.105 Sum_probs=57.1
Q ss_pred CeEEEEEeeC-CCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEcc-CCCeEEEEeCCCcEE
Q 038439 96 EKNFVGLTVN-SEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKS-DSPTMLTANSQGTIK 173 (179)
Q Consensus 96 ~v~~~~~~~~-~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~ 173 (179)
.|.+++-+|. .+.+++|+.||.+-+||.+.......+. . .|+.+++.+-|+| ++..|++++.||.+-
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l-~----------ahk~~i~eV~FHpk~p~~Lft~sedGslw 249 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLL-K----------AHKAEIWEVHFHPKNPEHLFTCSEDGSLW 249 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHH-H----------HhhhhhhheeccCCCchheeEecCCCcEE
Confidence 4888888886 4567788899999999999874433322 1 2278899999998 678899999999999
Q ss_pred EEeec
Q 038439 174 VLVLA 178 (179)
Q Consensus 174 iwd~~ 178 (179)
-||-.
T Consensus 250 ~wdas 254 (319)
T KOG4714|consen 250 HWDAS 254 (319)
T ss_pred EEcCC
Confidence 99865
No 301
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.52 E-value=2.1e-06 Score=58.82 Aligned_cols=165 Identities=16% Similarity=0.216 Sum_probs=114.2
Q ss_pred CCCccEEEEEc-CCceeEEeec--CCCceeEEEEcCCCCeEEEEe-C--------------CCcee--eecccCceeEEE
Q 038439 1 MAYGKVKVWCT-RQEASVLNID--MKANICCVKYNPGSSNYIAKY-Q--------------STAPC--VHGHKKAVSYVK 60 (179)
Q Consensus 1 ~~d~~i~vwd~-~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~-~--------------~~~~~--~~~~~~~i~~~~ 60 (179)
++|.+++||-- +.++.-..+. ...+++++.+++.. ..+.+| + ..... ...|...+..+-
T Consensus 43 s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~-~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~i 121 (404)
T KOG1409|consen 43 SEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSES-RRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIV 121 (404)
T ss_pred cccceeeeEEeccccccCchhhhhCCCCceEeeeeccc-eEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEE
Confidence 57889999953 3455444554 46779999999887 455555 1 11111 455677777776
Q ss_pred EeeC-CeEEEecCCCcEEEEec------------------------------------------CCCcceeeecCCCCCe
Q 038439 61 FLSN-DELASASTDSTLRLWDV------------------------------------------KENLPVRTFRGHMNEK 97 (179)
Q Consensus 61 ~~~~-~~l~~~~~d~~v~iwd~------------------------------------------~~~~~~~~~~~~~~~v 97 (179)
|+-. ..+++.+.|..+. |-. ..-.++.++.+|...+
T Consensus 122 f~~~~e~V~s~~~dk~~~-~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~ 200 (404)
T KOG1409|consen 122 FSLTHEWVLSTGKDKQFA-WHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEV 200 (404)
T ss_pred ecCCceeEEEeccccceE-EEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccce
Confidence 6655 6666666554432 111 1113566778899999
Q ss_pred EEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439 98 NFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVL 177 (179)
Q Consensus 98 ~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 177 (179)
.+++|.|....+++|..|..+.+||+--.+-. .+++..+ ...|..++..+--+.+.+++.||.|.+||+
T Consensus 201 ~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~-~~el~gh----------~~kV~~l~~~~~t~~l~S~~edg~i~~w~m 269 (404)
T KOG1409|consen 201 TCLKWDPGQRLLFSGASDHSVIMWDIGGRKGT-AYELQGH----------NDKVQALSYAQHTRQLISCGEDGGIVVWNM 269 (404)
T ss_pred EEEEEcCCCcEEEeccccCceEEEeccCCcce-eeeeccc----------hhhhhhhhhhhhheeeeeccCCCeEEEEec
Confidence 99999999999999999999999999754433 2333222 566777877777788999999999999997
Q ss_pred c
Q 038439 178 A 178 (179)
Q Consensus 178 ~ 178 (179)
+
T Consensus 270 n 270 (404)
T KOG1409|consen 270 N 270 (404)
T ss_pred c
Confidence 5
No 302
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.52 E-value=8.5e-05 Score=50.20 Aligned_cols=150 Identities=11% Similarity=0.081 Sum_probs=94.8
Q ss_pred ccEEEEEcCCceeEEeec------CCCceeEEEEcCCCCeEEEEe-C-----C---Ccee----------eecccCceeE
Q 038439 4 GKVKVWCTRQEASVLNID------MKANICCVKYNPGSSNYIAKY-Q-----S---TAPC----------VHGHKKAVSY 58 (179)
Q Consensus 4 ~~i~vwd~~~~~~~~~~~------~~~~v~~~~~~~~~~~~~~~~-~-----~---~~~~----------~~~~~~~i~~ 58 (179)
+.+.++|..+++...... ....++.+++.|+|. ++++. . . ++.. +.......+.
T Consensus 60 ~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~pNG 138 (246)
T PF08450_consen 60 GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPDGKVTVVADGLGFPNG 138 (246)
T ss_dssp TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETTSEEEEEEEEESSEEE
T ss_pred CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCCCeEEEEecCcccccc
Confidence 445666888775443332 234588999999995 44443 0 0 1122 1122334568
Q ss_pred EEEeeC-CeE-EEecCCCcEEEEecCCCcc-------eeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccc
Q 038439 59 VKFLSN-DEL-ASASTDSTLRLWDVKENLP-------VRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPV 129 (179)
Q Consensus 59 ~~~~~~-~~l-~~~~~d~~v~iwd~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~ 129 (179)
|+|+|+ +.| ++-+..+.|..+++..... ...+....+..-.+++..+|+++++....+.|.++|.+ ++.+
T Consensus 139 i~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~ 217 (246)
T PF08450_consen 139 IAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLL 217 (246)
T ss_dssp EEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEE
T ss_pred eEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEE
Confidence 999999 555 4667788899999864221 11222222346789999999988887788999999988 7777
Q ss_pred cccccCCCCCCCCcccCCcceEEEEEEc-cCCCeEEEEe
Q 038439 130 TWHRFSSPDMDDTDEDAGSYFISAVCWK-SDSPTMLTAN 167 (179)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~ 167 (179)
..+... ...+++++|. ++.+.|+..+
T Consensus 218 ~~i~~p------------~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 218 REIELP------------VPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEEE-S------------SSSEEEEEEESTTSSEEEEEE
T ss_pred EEEcCC------------CCCEEEEEEECCCCCEEEEEe
Confidence 766653 2478999994 6767666654
No 303
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.51 E-value=1.7e-05 Score=62.84 Aligned_cols=170 Identities=14% Similarity=0.191 Sum_probs=99.4
Q ss_pred ccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEe-------------CCC----cee--eecccCceeEEEEee
Q 038439 4 GKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKY-------------QST----APC--VHGHKKAVSYVKFLS 63 (179)
Q Consensus 4 ~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~-------------~~~----~~~--~~~~~~~i~~~~~~~ 63 (179)
+.++||+-+ |+...+-+ ..+--.+++|.|.| .++|+. ++| +.. +......|..+.|++
T Consensus 237 R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG-~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ 314 (928)
T PF04762_consen 237 RVIRVYSRE-GELQSTSEPVDGLEGALSWRPSG-NLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNS 314 (928)
T ss_pred eEEEEECCC-ceEEeccccCCCccCCccCCCCC-CEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECC
Confidence 578888854 55444333 22334688999999 566665 111 111 223456789999999
Q ss_pred C-CeEEEecCCCcEEEEecCCCc--ceeeecC-CCCCeEEEEEeeC-CCEEEEeccCCcEEEEEcC----CCc-------
Q 038439 64 N-DELASASTDSTLRLWDVKENL--PVRTFRG-HMNEKNFVGLTVN-SEYIACGSESNEVYVYHKE----ISK------- 127 (179)
Q Consensus 64 ~-~~l~~~~~d~~v~iwd~~~~~--~~~~~~~-~~~~v~~~~~~~~-~~~~~~~~~d~~v~vwd~~----~~~------- 127 (179)
+ ..|+..-.| .|.+|-..... +.+.+.. ....+..+.|+|. ...+...+.+|.+..++.. .+.
T Consensus 315 ds~iLAv~~~~-~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~ 393 (928)
T PF04762_consen 315 DSEILAVWLED-RVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDN 393 (928)
T ss_pred CCCEEEEEecC-CceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCc
Confidence 9 777765544 49999887643 1222221 2233445889985 4446666665666554432 111
Q ss_pred ---------ccccccc----CCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439 128 ---------PVTWHRF----SSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVL 177 (179)
Q Consensus 128 ---------~~~~~~~----~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 177 (179)
.+..-.+ -++++....-.- ...|..++|++++..+++-..||.|.+|..
T Consensus 394 g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~-~~~v~~vaf~~~~~~~avl~~d~~l~~~~~ 455 (928)
T PF04762_consen 394 GTVAVIDGNKLLLTPFRRAVVPPPMSSYELEL-PSPVNDVAFSPSNSRFAVLTSDGSLSIYEW 455 (928)
T ss_pred eEEEEEeCCeEEEecccccCCCchHhceEEcC-CCCcEEEEEeCCCCeEEEEECCCCEEEEEe
Confidence 0000000 011111111111 567999999999988999999999999984
No 304
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=1.2e-06 Score=61.02 Aligned_cols=78 Identities=17% Similarity=0.213 Sum_probs=68.0
Q ss_pred eecccCceeEEEEeeC--CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeC-CCEEEEeccCCcEEEEEcCC
Q 038439 49 VHGHKKAVSYVKFLSN--DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVN-SEYIACGSESNEVYVYHKEI 125 (179)
Q Consensus 49 ~~~~~~~i~~~~~~~~--~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~d~~v~vwd~~~ 125 (179)
+..+...|..++|+|. +++..++.+..|+|.|+++...+..+..+ ..+++++|..| .++|+.|...|.|.+||++.
T Consensus 189 lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~ 267 (463)
T KOG1645|consen 189 LPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQ 267 (463)
T ss_pred ccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccC
Confidence 5667788999999999 68999999999999999999888888876 77999999987 45688888999999999986
Q ss_pred Cc
Q 038439 126 SK 127 (179)
Q Consensus 126 ~~ 127 (179)
.+
T Consensus 268 ~~ 269 (463)
T KOG1645|consen 268 PE 269 (463)
T ss_pred CC
Confidence 43
No 305
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.50 E-value=1.3e-05 Score=58.34 Aligned_cols=110 Identities=14% Similarity=0.225 Sum_probs=72.3
Q ss_pred CceeEEEEeeC-CeEEEecC---CCcEEEEecCC-C---cceeeecCCCCCeEEEEEeeCCCEEEEe---ccCCcEEEEE
Q 038439 54 KAVSYVKFLSN-DELASAST---DSTLRLWDVKE-N---LPVRTFRGHMNEKNFVGLTVNSEYIACG---SESNEVYVYH 122 (179)
Q Consensus 54 ~~i~~~~~~~~-~~l~~~~~---d~~v~iwd~~~-~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~---~~d~~v~vwd 122 (179)
..|...+|-|. +.+++-+. ..++++|-+.+ . +++..+. ....+.+.|+|.|++++++ +..|.+..+|
T Consensus 446 e~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D 523 (698)
T KOG2314|consen 446 ESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFYD 523 (698)
T ss_pred hheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCCcEEEEEEecccccceEEEe
Confidence 45667788888 66555443 34788888773 2 2333332 3456789999999998765 4578899999
Q ss_pred cCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCC------CcEEEEee
Q 038439 123 KEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQ------GTIKVLVL 177 (179)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~i~iwd~ 177 (179)
..-.......... -...+.+.|.|.|+|+++++.. .--++|++
T Consensus 524 ~~~a~~k~~~~~e------------h~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tf 572 (698)
T KOG2314|consen 524 TDYADLKDTASPE------------HFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTF 572 (698)
T ss_pred cchhhhhhccCcc------------ccccccceECCCCCEEEEeeehhhhccccceEEEEe
Confidence 8753332222111 2346779999999999998873 34566654
No 306
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=5.4e-07 Score=62.74 Aligned_cols=91 Identities=14% Similarity=0.150 Sum_probs=73.9
Q ss_pred EEEEecCCCcceeeecCCCCCeEEEEEeeCCC-EEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEE
Q 038439 76 LRLWDVKENLPVRTFRGHMNEKNFVGLTVNSE-YIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAV 154 (179)
Q Consensus 76 v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 154 (179)
+++.+..+.+....+..+...|+.++|+|..+ ++..++.+..|+|.|+++...+..+.. ...++++
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a-------------~~~~wSC 241 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIA-------------YNQIWSC 241 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheec-------------cCCceee
Confidence 56666555555555566778899999999877 678889999999999999888777665 5679999
Q ss_pred EEccC-CCeEEEEeCCCcEEEEeecC
Q 038439 155 CWKSD-SPTMLTANSQGTIKVLVLAA 179 (179)
Q Consensus 155 ~~~~~-~~~l~~~~~dg~i~iwd~~~ 179 (179)
+|..+ .+++++|-..|.|.|||++.
T Consensus 242 ~wDlde~h~IYaGl~nG~VlvyD~R~ 267 (463)
T KOG1645|consen 242 CWDLDERHVIYAGLQNGMVLVYDMRQ 267 (463)
T ss_pred eeccCCcceeEEeccCceEEEEEccC
Confidence 99875 46889999999999999873
No 307
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.50 E-value=2.2e-06 Score=65.38 Aligned_cols=103 Identities=7% Similarity=-0.002 Sum_probs=75.2
Q ss_pred CCCceeEEEEcCCCCeEEEEe-------------CCCcee-eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCcc
Q 038439 22 MKANICCVKYNPGSSNYIAKY-------------QSTAPC-VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLP 86 (179)
Q Consensus 22 ~~~~v~~~~~~~~~~~~~~~~-------------~~~~~~-~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~ 86 (179)
..+..+-..|+|..+.+.++. ++++|- -....-.+++++|+|. -.|+.|=.-|.+.+|...+.+.
T Consensus 14 sdavsti~SWHPsePlfAVA~fS~er~GSVtIfadtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~ 93 (1416)
T KOG3617|consen 14 SDAVSTISSWHPSEPLFAVASFSPERGGSVTIFADTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET 93 (1416)
T ss_pred ccccccccccCCCCceeEEEEecCCCCceEEEEecCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCcee
Confidence 334455677888886554444 222222 0001123467999999 6777887889999999887776
Q ss_pred eeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcC
Q 038439 87 VRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKE 124 (179)
Q Consensus 87 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~ 124 (179)
-.....|..++..+.|+|+|..++++..-|.|.+|...
T Consensus 94 htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 94 HTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 65566789999999999999999999999999999876
No 308
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.50 E-value=1.7e-07 Score=71.49 Aligned_cols=155 Identities=12% Similarity=0.165 Sum_probs=105.5
Q ss_pred CCccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEeCCCcee----------eeccc-CceeEEEEeeC-CeEE
Q 038439 2 AYGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKYQSTAPC----------VHGHK-KAVSYVKFLSN-DELA 68 (179)
Q Consensus 2 ~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~----------~~~~~-~~i~~~~~~~~-~~l~ 68 (179)
-.|.|+++++.+|....... |+++|+-+.-+.+|..++..+...+|+ -..|+ ..-.++.|+.. ..-+
T Consensus 1121 ~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~ed~~vkFsn~~q~r~ 1200 (1516)
T KOG1832|consen 1121 HAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFDEDKAVKFSNSLQFRA 1200 (1516)
T ss_pred ccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccccccCccccccccceeehhhhHHHHH
Confidence 35889999999998877776 899999999999998888777444433 11122 23467888877 4445
Q ss_pred EecCCCcEEEEecCCCcceeeecCC----CCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcc
Q 038439 69 SASTDSTLRLWDVKENLPVRTFRGH----MNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDE 144 (179)
Q Consensus 69 ~~~~d~~v~iwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 144 (179)
.|.....+.+||++++.++.++-.. ...-+.+.|+|+..+++- || .+||++..+.+..+.-.
T Consensus 1201 ~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIln---dG--vLWDvR~~~aIh~FD~f--------- 1266 (1516)
T KOG1832|consen 1201 LGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILN---DG--VLWDVRIPEAIHRFDQF--------- 1266 (1516)
T ss_pred hcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEee---Cc--eeeeeccHHHHhhhhhh---------
Confidence 5555567899999998877764321 223367889999888763 55 48999988766554321
Q ss_pred cCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439 145 DAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA 179 (179)
Q Consensus 145 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 179 (179)
..--.-.|+|+|..++.-+. |||+++
T Consensus 1267 ----t~~~~G~FHP~g~eVIINSE-----IwD~RT 1292 (1516)
T KOG1832|consen 1267 ----TDYGGGGFHPSGNEVIINSE-----IWDMRT 1292 (1516)
T ss_pred ----eecccccccCCCceEEeech-----hhhhHH
Confidence 11122347888887776553 676653
No 309
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.49 E-value=2.6e-06 Score=63.33 Aligned_cols=112 Identities=16% Similarity=0.251 Sum_probs=81.8
Q ss_pred EEeeC-CeEEEecCCCcEEEEecCCCcceeeecC--CCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCC
Q 038439 60 KFLSN-DELASASTDSTLRLWDVKENLPVRTFRG--HMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSS 136 (179)
Q Consensus 60 ~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~ 136 (179)
++... .+++.|+.-|.+.+|+-..++ ++.++. ..+.+.....+++..++|.|+..|.|.++.+....+........
T Consensus 40 c~dst~~~l~~GsS~G~lyl~~R~~~~-~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~ 118 (726)
T KOG3621|consen 40 CVDATEEYLAMGSSAGSVYLYNRHTGE-MRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTP 118 (726)
T ss_pred EeecCCceEEEecccceEEEEecCchh-hhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeecc
Confidence 34445 899999999999999976554 333333 34455566788888888999999999999888754433222211
Q ss_pred CCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439 137 PDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 137 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
.+ ..|+..|++++|++++..+++|...|+|..-.|.
T Consensus 119 ~d------~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~ 154 (726)
T KOG3621|consen 119 CD------KSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELD 154 (726)
T ss_pred cc------ccCCceEEEEEecccccEEeecCCCceEEEEEec
Confidence 11 1137899999999999999999999999876654
No 310
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.49 E-value=3.3e-05 Score=56.31 Aligned_cols=133 Identities=14% Similarity=0.100 Sum_probs=74.2
Q ss_pred CCCceeEEEEcCCCCeEEEEeCCCcee-ee------cccCceeEEEEeeCCeEEEecCCCcEEEE-ecCCCcceeeecCC
Q 038439 22 MKANICCVKYNPGSSNYIAKYQSTAPC-VH------GHKKAVSYVKFLSNDELASASTDSTLRLW-DVKENLPVRTFRGH 93 (179)
Q Consensus 22 ~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~------~~~~~i~~~~~~~~~~l~~~~~d~~v~iw-d~~~~~~~~~~~~~ 93 (179)
..-.+..+.++|+|+.+++++ .++.. +. ...+.-..+.|.+.+.+++-.....|.++ ++. .+....++..
T Consensus 31 ~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~k~~G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~-~~~~k~i~~~ 108 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRNKAFGSGLSFVWSSRNRYAVLESSSTIKIYKNFK-NEVVKSIKLP 108 (443)
T ss_dssp -SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEEEEEE-SEEEE-TSSEEEEE-TTS-EEEEETTE-E-TT-----S
T ss_pred CCcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCcccccCceeEEEEecCccEEEEECCCeEEEEEcCc-cccceEEcCC
Confidence 345589999999997666655 33322 11 22344566788888777777778889996 342 2222333321
Q ss_pred CCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEE
Q 038439 94 MNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIK 173 (179)
Q Consensus 94 ~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 173 (179)
..+..+-. |..|...+. +.|.+||..+++.+..... ..|..+.|++++++++..+.+ .+.
T Consensus 109 -~~~~~If~---G~LL~~~~~-~~i~~yDw~~~~~i~~i~v--------------~~vk~V~Ws~~g~~val~t~~-~i~ 168 (443)
T PF04053_consen 109 -FSVEKIFG---GNLLGVKSS-DFICFYDWETGKLIRRIDV--------------SAVKYVIWSDDGELVALVTKD-SIY 168 (443)
T ss_dssp -S-EEEEE----SSSEEEEET-TEEEEE-TTT--EEEEESS---------------E-EEEEE-TTSSEEEEE-S--SEE
T ss_pred -cccceEEc---CcEEEEECC-CCEEEEEhhHcceeeEEec--------------CCCcEEEEECCCCEEEEEeCC-eEE
Confidence 12333322 777776654 4899999999998877764 248999999999999999876 566
Q ss_pred EEe
Q 038439 174 VLV 176 (179)
Q Consensus 174 iwd 176 (179)
|++
T Consensus 169 il~ 171 (443)
T PF04053_consen 169 ILK 171 (443)
T ss_dssp EEE
T ss_pred EEE
Confidence 655
No 311
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.49 E-value=2.4e-05 Score=61.74 Aligned_cols=111 Identities=9% Similarity=0.146 Sum_probs=69.6
Q ss_pred EEEEeeC-CeEEEe-----cCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEec---cCCcEEEEEcCCCcc
Q 038439 58 YVKFLSN-DELASA-----STDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGS---ESNEVYVYHKEISKP 128 (179)
Q Consensus 58 ~~~~~~~-~~l~~~-----~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~---~d~~v~vwd~~~~~~ 128 (179)
.|.|--| .++++. ...+.+++||-+ +.+-..-......-.+++|-|.|..+++-. .|+.|.+|... |-.
T Consensus 200 ~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN-GL~ 277 (1265)
T KOG1920|consen 200 SISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN-GLR 277 (1265)
T ss_pred eEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecC-Ccc
Confidence 4788888 677662 333789999976 432222222233345799999999988753 35668888754 322
Q ss_pred ccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEE---EeCCCcEEEEeec
Q 038439 129 VTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLT---ANSQGTIKVLVLA 178 (179)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~---~~~dg~i~iwd~~ 178 (179)
-..+.+..+. ....+..++|+.++..|++ ......|++|-+.
T Consensus 278 hg~f~l~~p~--------de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~ 322 (1265)
T KOG1920|consen 278 HGEFVLPFPL--------DEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTG 322 (1265)
T ss_pred ccccccCCcc--------cccchheeeecCCCCceeeeecccccceEEEEEec
Confidence 2222222211 0334899999999999888 4444459999764
No 312
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.46 E-value=0.00011 Score=49.12 Aligned_cols=161 Identities=13% Similarity=0.041 Sum_probs=93.2
Q ss_pred CCccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe----------CCCcee-e-eccc----CceeEEEEeeC-
Q 038439 2 AYGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY----------QSTAPC-V-HGHK----KAVSYVKFLSN- 64 (179)
Q Consensus 2 ~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----------~~~~~~-~-~~~~----~~i~~~~~~~~- 64 (179)
.++.|..||..+++.+..+....++.......++ .+++.. .+++.+ . .... ...........
T Consensus 44 ~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~-~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~ 122 (238)
T PF13360_consen 44 GDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGG-RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDG 122 (238)
T ss_dssp TTSEEEEEETTTSEEEEEEECSSCGGSGEEEETT-EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEET
T ss_pred CCCEEEEEECCCCCEEEEeeccccccceeeeccc-ccccccceeeeEecccCCcceeeeeccccccccccccccCceEec
Confidence 5788999999999988777654433222222222 233222 445554 1 1111 01112222223
Q ss_pred CeEEEecCCCcEEEEecCCCcceeeecCCCCC----------eEEEEEeeCCCEEEEeccCCcEEEEEcCCCcccccccc
Q 038439 65 DELASASTDSTLRLWDVKENLPVRTFRGHMNE----------KNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRF 134 (179)
Q Consensus 65 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~----------v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~ 134 (179)
..++.+..++.|..+|+++++.+..+...... +..-....++ .++.+..++.+..+|+++++.+.....
T Consensus 123 ~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~~ 201 (238)
T PF13360_consen 123 DRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKPI 201 (238)
T ss_dssp TEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEECS
T ss_pred CEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEecC
Confidence 67778888999999999999988776553322 1111222244 666677777544449999986532221
Q ss_pred CCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439 135 SSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA 179 (179)
Q Consensus 135 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 179 (179)
.. +.. ....++..|++++.++.+..||+++
T Consensus 202 -------------~~-~~~-~~~~~~~~l~~~~~~~~l~~~d~~t 231 (238)
T PF13360_consen 202 -------------SG-IYS-LPSVDGGTLYVTSSDGRLYALDLKT 231 (238)
T ss_dssp -------------S--ECE-CEECCCTEEEEEETTTEEEEEETTT
T ss_pred -------------CC-ccC-CceeeCCEEEEEeCCCEEEEEECCC
Confidence 11 222 1346788888888999999999875
No 313
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.45 E-value=3.2e-06 Score=63.71 Aligned_cols=99 Identities=15% Similarity=0.175 Sum_probs=75.0
Q ss_pred CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeC-----CCEEEEeccCCcEEEEEcCCCccccccccCCCCC
Q 038439 65 DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVN-----SEYIACGSESNEVYVYHKEISKPVTWHRFSSPDM 139 (179)
Q Consensus 65 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~ 139 (179)
.++++||.||.|.|-.+-+.+...++. ...++.+++++|+ .+.+++|+..| +.++..+-............
T Consensus 84 ey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~-- 159 (846)
T KOG2066|consen 84 EYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEG-- 159 (846)
T ss_pred ceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecC--
Confidence 799999999999999988877766665 3567899999998 56789999988 77776543222222211111
Q ss_pred CCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439 140 DDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 140 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
.++|.+++|. |+++|-++.+| |+|||+.
T Consensus 160 --------eG~I~~i~W~--g~lIAWand~G-v~vyd~~ 187 (846)
T KOG2066|consen 160 --------EGPIHSIKWR--GNLIAWANDDG-VKVYDTP 187 (846)
T ss_pred --------ccceEEEEec--CcEEEEecCCC-cEEEecc
Confidence 7789999995 88899999887 8999975
No 314
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.43 E-value=0.00017 Score=49.58 Aligned_cols=148 Identities=11% Similarity=0.056 Sum_probs=88.7
Q ss_pred CccEEEEEcC-CceeEEeec-CCCceeEEEEcCCCCeEEEEe----------------------------CCCcee----
Q 038439 3 YGKVKVWCTR-QEASVLNID-MKANICCVKYNPGSSNYIAKY----------------------------QSTAPC---- 48 (179)
Q Consensus 3 d~~i~vwd~~-~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~----------------------------~~~~~~---- 48 (179)
.|.|-|||.. +.+.+.++. +.-....+.+.|+|+.|+++- .+++.+
T Consensus 76 ~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~ 155 (305)
T PF07433_consen 76 RGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVE 155 (305)
T ss_pred cEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeee
Confidence 5789999998 667777776 555678889999996555543 222222
Q ss_pred e--ecccCceeEEEEeeCCeEEEecCC-C-------cEEEEecCCCcceeeecC-------CCCCeEEEEEeeCCCEEE-
Q 038439 49 V--HGHKKAVSYVKFLSNDELASASTD-S-------TLRLWDVKENLPVRTFRG-------HMNEKNFVGLTVNSEYIA- 110 (179)
Q Consensus 49 ~--~~~~~~i~~~~~~~~~~l~~~~~d-~-------~v~iwd~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~~- 110 (179)
+ ..|.-.|.-+++.+++.++.+... + -|-+++ .++.+..+.. -.+-+-++++++++.+++
T Consensus 156 Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~ 233 (305)
T PF07433_consen 156 LPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAV 233 (305)
T ss_pred cCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEE
Confidence 2 224445555666555333333211 1 122222 2222332322 235678999999998775
Q ss_pred EeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEe
Q 038439 111 CGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTAN 167 (179)
Q Consensus 111 ~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 167 (179)
++-.-+.+.+||..+++.+....+ ..+..++-.+++ ++++.+
T Consensus 234 tsPrGg~~~~~d~~tg~~~~~~~l--------------~D~cGva~~~~~-f~~ssG 275 (305)
T PF07433_consen 234 TSPRGGRVAVWDAATGRLLGSVPL--------------PDACGVAPTDDG-FLVSSG 275 (305)
T ss_pred ECCCCCEEEEEECCCCCEeecccc--------------CceeeeeecCCc-eEEeCC
Confidence 445578899999999998876653 245666666655 444443
No 315
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.42 E-value=1.3e-06 Score=59.26 Aligned_cols=126 Identities=16% Similarity=0.171 Sum_probs=83.6
Q ss_pred eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCcce---eeecCC-----CCCeEEEEEeeC-CCEEEEeccCCcE
Q 038439 49 VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPV---RTFRGH-----MNEKNFVGLTVN-SEYIACGSESNEV 118 (179)
Q Consensus 49 ~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~---~~~~~~-----~~~v~~~~~~~~-~~~~~~~~~d~~v 118 (179)
...|.-.|+++.+..+ ..+++ +.|-.|.+|++...... -.++.| ...|++..|+|. ...+...+..|.|
T Consensus 168 aNaH~yhiNSiS~NsD~et~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~I 246 (460)
T COG5170 168 ANAHPYHINSISFNSDKETLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEI 246 (460)
T ss_pred cccceeEeeeeeecCchheeee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcE
Confidence 4678889999999999 55555 55788999998753322 223333 235788899996 4556667778999
Q ss_pred EEEEcCCCcc------ccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439 119 YVYHKEISKP------VTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 119 ~vwd~~~~~~------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
++-|++.... +......+.. ...+.+. -..|..+.|+++|+++++-+.- +++|||.+
T Consensus 247 kl~DlRq~alcdn~~klfe~~~D~v~-~~ff~ei-vsSISD~kFs~ngryIlsRdyl-tvkiwDvn 309 (460)
T COG5170 247 KLNDLRQSALCDNSKKLFELTIDGVD-VDFFEEI-VSSISDFKFSDNGRYILSRDYL-TVKIWDVN 309 (460)
T ss_pred EehhhhhhhhccCchhhhhhccCccc-chhHHHH-hhhhcceEEcCCCcEEEEeccc-eEEEEecc
Confidence 9999995432 1111111110 1111111 4568889999999999876654 79999975
No 316
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.41 E-value=0.0001 Score=53.02 Aligned_cols=126 Identities=10% Similarity=0.060 Sum_probs=73.4
Q ss_pred CCccEEEEEcCCceeEEeecCCCcee-EEEEcCCCCeEEEEe----------CCCcee-eecccCceeEEEEeeCCeEEE
Q 038439 2 AYGKVKVWCTRQEASVLNIDMKANIC-CVKYNPGSSNYIAKY----------QSTAPC-VHGHKKAVSYVKFLSNDELAS 69 (179)
Q Consensus 2 ~d~~i~vwd~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~----------~~~~~~-~~~~~~~i~~~~~~~~~~l~~ 69 (179)
.+|.|.-+|..+++.+-.......+. .... ++..+++.. .+++.+ .......+.+.-...++.++.
T Consensus 73 ~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v~~~~v~v 150 (377)
T TIGR03300 73 ADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLVANGLVVV 150 (377)
T ss_pred CCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEEECCEEEE
Confidence 46789999999998877766444332 2222 233444443 233433 111112221111112266777
Q ss_pred ecCCCcEEEEecCCCcceeeecCCCCCeE-----EEEEeeCCCEEEEeccCCcEEEEEcCCCccccc
Q 038439 70 ASTDSTLRLWDVKENLPVRTFRGHMNEKN-----FVGLTVNSEYIACGSESNEVYVYHKEISKPVTW 131 (179)
Q Consensus 70 ~~~d~~v~iwd~~~~~~~~~~~~~~~~v~-----~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~ 131 (179)
++.++.+..+|.++++.+..+........ .... .+..++.+..++.+..+|+++++.+..
T Consensus 151 ~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~ 215 (377)
T TIGR03300 151 RTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWE 215 (377)
T ss_pred ECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeee
Confidence 88899999999999987776654322111 1111 134677888889999999999876544
No 317
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.38 E-value=8.2e-05 Score=53.48 Aligned_cols=97 Identities=7% Similarity=0.004 Sum_probs=64.2
Q ss_pred CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcc
Q 038439 65 DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDE 144 (179)
Q Consensus 65 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 144 (179)
+.++.++.++.+..+|..+++.+...... . .... ...+..+++++.+|.+..+|..+++.+.......
T Consensus 242 ~~vy~~~~~g~l~a~d~~tG~~~W~~~~~-~-~~~p--~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~-------- 309 (377)
T TIGR03300 242 GQVYAVSYQGRVAALDLRSGRVLWKRDAS-S-YQGP--AVDDNRLYVTDADGVVVALDRRSGSELWKNDELK-------- 309 (377)
T ss_pred CEEEEEEcCCEEEEEECCCCcEEEeeccC-C-ccCc--eEeCCEEEEECCCCeEEEEECCCCcEEEcccccc--------
Confidence 66777888899999999988776655421 1 1111 2346678888889999999999988764432100
Q ss_pred cCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439 145 DAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 145 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
......... .+..+++++.+|.++++|.+
T Consensus 310 ---~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~ 338 (377)
T TIGR03300 310 ---YRQLTAPAV--VGGYLVVGDFEGYLHWLSRE 338 (377)
T ss_pred ---CCccccCEE--ECCEEEEEeCCCEEEEEECC
Confidence 111111112 36688889999999999865
No 318
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.33 E-value=0.00014 Score=48.88 Aligned_cols=114 Identities=11% Similarity=0.042 Sum_probs=72.2
Q ss_pred CCCceeEEEEcCCCCeEEEEeC-CCcee-eecccCceeEEEEeeC-Ce--EEEecCCCcE------EEEecCCCcceeee
Q 038439 22 MKANICCVKYNPGSSNYIAKYQ-STAPC-VHGHKKAVSYVKFLSN-DE--LASASTDSTL------RLWDVKENLPVRTF 90 (179)
Q Consensus 22 ~~~~v~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~i~~~~~~~~-~~--l~~~~~d~~v------~iwd~~~~~~~~~~ 90 (179)
....|.++.|+|..+.++++|. ..+.- -.+-...+++-+...+ .+ .++...|+.. .+|.+.+.+.....
T Consensus 146 yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~ 225 (282)
T PF15492_consen 146 YPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQ 225 (282)
T ss_pred CCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeecc
Confidence 4678999999999866666662 21111 3344456666666655 22 2343333321 23332222111111
Q ss_pred cCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccC
Q 038439 91 RGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFS 135 (179)
Q Consensus 91 ~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~ 135 (179)
......|..|..+|||+.|++...+|.|.+|++.+-+....+...
T Consensus 226 ~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 226 GQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred ccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence 224567999999999999999999999999999988777666654
No 319
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.32 E-value=0.00031 Score=49.46 Aligned_cols=163 Identities=13% Similarity=0.133 Sum_probs=95.7
Q ss_pred ccEEEEEcCCceeEEeec--CCCceeEEEE---cCC---CCeEEEEe----------CC-Ccee----------------
Q 038439 4 GKVKVWCTRQEASVLNID--MKANICCVKY---NPG---SSNYIAKY----------QS-TAPC---------------- 48 (179)
Q Consensus 4 ~~i~vwd~~~~~~~~~~~--~~~~v~~~~~---~~~---~~~~~~~~----------~~-~~~~---------------- 48 (179)
..|+|.|..+.+.+..+. ....+.+++. ..+ ...++++| .. |+.+
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 468999998888777664 4445554443 332 14677777 01 2222
Q ss_pred --eecccCceeEEEEeeCCeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCC-
Q 038439 49 --VHGHKKAVSYVKFLSNDELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEI- 125 (179)
Q Consensus 49 --~~~~~~~i~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~- 125 (179)
.....++|.++.-. .+.++.+. .+.|.+|++...+.+.........+...+....++++++|.....+.++..+.
T Consensus 82 i~~~~~~g~V~ai~~~-~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~ 159 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEE 159 (321)
T ss_dssp EEEEEESS-EEEEEEE-TTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEETT
T ss_pred EEEEeecCcceEhhhh-CCEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEcc
Confidence 12234567776644 34444444 47899999987762322222222233444444577999998888888886554
Q ss_pred CccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439 126 SKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
...+........ ...++++.+-++++.++++..+|.+.++..+
T Consensus 160 ~~~l~~va~d~~----------~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 160 NNKLILVARDYQ----------PRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp TE-EEEEEEESS-----------BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred CCEEEEEEecCC----------CccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 221222211111 5568888888777799999999999998764
No 320
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.32 E-value=9.8e-07 Score=67.50 Aligned_cols=115 Identities=11% Similarity=0.110 Sum_probs=90.7
Q ss_pred eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCC--cEEEEEcCC
Q 038439 49 VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESN--EVYVYHKEI 125 (179)
Q Consensus 49 ~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~--~v~vwd~~~ 125 (179)
+..|+...+|++|+.+ ++|+.|+..|.|+++++.+|.....+.+|.+.++.+.-+.+|...++.+.-. ...+|++.+
T Consensus 1097 frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s 1176 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASS 1176 (1516)
T ss_pred hhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhcccc
Confidence 6778899999999999 9999999999999999999999999999999999999898998877655432 467899875
Q ss_pred -CccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439 126 -SKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA 179 (179)
Q Consensus 126 -~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 179 (179)
+.+..++. .-.++.|+...+.-+.|+......+||+++
T Consensus 1177 ~~~~~Hsf~----------------ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT 1215 (1516)
T KOG1832|consen 1177 TGGPRHSFD----------------EDKAVKFSNSLQFRALGTEADDALLYDVQT 1215 (1516)
T ss_pred ccCcccccc----------------ccceeehhhhHHHHHhcccccceEEEeccc
Confidence 44444433 235577776655556666666788888764
No 321
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.31 E-value=0.00031 Score=47.47 Aligned_cols=159 Identities=11% Similarity=0.098 Sum_probs=92.8
Q ss_pred ccEEEEEcCCceeEEeecCCCceeEEEEc-CCCCeEEEEe---------CCCcee----ee--c-ccCceeEEEEeeC-C
Q 038439 4 GKVKVWCTRQEASVLNIDMKANICCVKYN-PGSSNYIAKY---------QSTAPC----VH--G-HKKAVSYVKFLSN-D 65 (179)
Q Consensus 4 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~---------~~~~~~----~~--~-~~~~i~~~~~~~~-~ 65 (179)
+.|.-|+..+++.. .+.... ...+++. +++ .++++. .+++.. .. . .....+.+++.|+ +
T Consensus 22 ~~i~~~~~~~~~~~-~~~~~~-~~G~~~~~~~g-~l~v~~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ 98 (246)
T PF08450_consen 22 GRIYRVDPDTGEVE-VIDLPG-PNGMAFDRPDG-RLYVADSGGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGN 98 (246)
T ss_dssp TEEEEEETTTTEEE-EEESSS-EEEEEEECTTS-EEEEEETTCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-
T ss_pred CEEEEEECCCCeEE-EEecCC-CceEEEEccCC-EEEEEEcCceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCC
Confidence 34444554444332 222233 7777887 666 666665 222222 21 1 3356778999999 6
Q ss_pred eEEEecCC--------CcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEE-EeccCCcEEEEEcCCCcc-ccc----
Q 038439 66 ELASASTD--------STLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIA-CGSESNEVYVYHKEISKP-VTW---- 131 (179)
Q Consensus 66 ~l~~~~~d--------~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~d~~v~vwd~~~~~~-~~~---- 131 (179)
++++.... +.+..++.. ++ +..+.......+.++|+|+++.|+ +-+..+.|..+++..... +..
T Consensus 99 ly~t~~~~~~~~~~~~g~v~~~~~~-~~-~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~ 176 (246)
T PF08450_consen 99 LYVTDSGGGGASGIDPGSVYRIDPD-GK-VTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVF 176 (246)
T ss_dssp EEEEEECCBCTTCGGSEEEEEEETT-SE-EEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEE
T ss_pred EEEEecCCCccccccccceEEECCC-Ce-EEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeE
Confidence 66665543 446666666 44 333333345578999999998765 556678899999864322 111
Q ss_pred cccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439 132 HRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVL 177 (179)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 177 (179)
..+... ....-.+++..+|+..++....+.|.++|.
T Consensus 177 ~~~~~~----------~g~pDG~~vD~~G~l~va~~~~~~I~~~~p 212 (246)
T PF08450_consen 177 IDFPGG----------PGYPDGLAVDSDGNLWVADWGGGRIVVFDP 212 (246)
T ss_dssp EE-SSS----------SCEEEEEEEBTTS-EEEEEETTTEEEEEET
T ss_pred EEcCCC----------CcCCCcceEcCCCCEEEEEcCCCEEEEECC
Confidence 111110 234788999999998888778888988874
No 322
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.27 E-value=6.6e-07 Score=65.87 Aligned_cols=166 Identities=11% Similarity=0.172 Sum_probs=101.6
Q ss_pred CCccEEEEEcCCcee---EEeecCCCceeEEEEcCCCCeEEEEe----CCCcee-----------------eec-ccCce
Q 038439 2 AYGKVKVWCTRQEAS---VLNIDMKANICCVKYNPGSSNYIAKY----QSTAPC-----------------VHG-HKKAV 56 (179)
Q Consensus 2 ~d~~i~vwd~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~~-----------------~~~-~~~~i 56 (179)
.+|.|-+-.+....- ..+-.+..++++++|++-....+|+| +...++ +.+ .....
T Consensus 78 atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gq 157 (783)
T KOG1008|consen 78 ATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQ 157 (783)
T ss_pred ccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCc
Confidence 346666665543321 12223567899999999877788888 111111 222 23345
Q ss_pred eEEEEeeC-CeEEEecCCCcEEEEecCCCc-ceeeecCCCCCeEEEEEee-CCCEEEEeccCCcEEEEE-cCCCc-cccc
Q 038439 57 SYVKFLSN-DELASASTDSTLRLWDVKENL-PVRTFRGHMNEKNFVGLTV-NSEYIACGSESNEVYVYH-KEISK-PVTW 131 (179)
Q Consensus 57 ~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~-~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~d~~v~vwd-~~~~~-~~~~ 131 (179)
.+++|..+ .++++|...+.+.++|++... ....+ .+..+..+...| .+.|+++-. |+.|.+|| .+.-+ ++..
T Consensus 158 ns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~ 234 (783)
T KOG1008|consen 158 NSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQI 234 (783)
T ss_pred cccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHH
Confidence 57788877 788888888899999998432 11122 234566677888 677777655 99999999 54433 3332
Q ss_pred cccCCCCCCCCcccCCcceEEEEEEccC--CCeEEEEeCCCcEEEEeec
Q 038439 132 HRFSSPDMDDTDEDAGSYFISAVCWKSD--SPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~iwd~~ 178 (179)
.......+ ...+..++|+|. |...+..-..++|++||+.
T Consensus 235 i~~~~N~~--------~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 235 ILRNENKK--------PKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred HhhCCCCc--------ccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 22211100 336899999994 4434444457889999874
No 323
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=98.26 E-value=3.7e-06 Score=38.65 Aligned_cols=38 Identities=18% Similarity=0.444 Sum_probs=32.8
Q ss_pred cceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEE
Q 038439 85 LPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYH 122 (179)
Q Consensus 85 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd 122 (179)
++...+..|...+.++.|++++..+++++.|+.+++||
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 34556667888899999999999999999999999996
No 324
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.25 E-value=0.00016 Score=55.02 Aligned_cols=120 Identities=17% Similarity=0.170 Sum_probs=86.7
Q ss_pred ccEEEEEcCCceeEEeec-CCCceeEEEEcCC-----------CCeEEEEe-CCCcee------------eecccCceeE
Q 038439 4 GKVKVWCTRQEASVLNID-MKANICCVKYNPG-----------SSNYIAKY-QSTAPC------------VHGHKKAVSY 58 (179)
Q Consensus 4 ~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~-----------~~~~~~~~-~~~~~~------------~~~~~~~i~~ 58 (179)
..|.+-|..+.+.++.++ |+..|+.+.|.|- .+.+++++ ..|+.+ +..|..++..
T Consensus 35 slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qd 114 (1062)
T KOG1912|consen 35 SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQD 114 (1062)
T ss_pred ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhh
Confidence 467788888888888887 7788999999872 22345555 222222 6678889999
Q ss_pred EEEeeC-----CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEee-CCCEEEEeccCCcEEEEEc
Q 038439 59 VKFLSN-----DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTV-NSEYIACGSESNEVYVYHK 123 (179)
Q Consensus 59 ~~~~~~-----~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~d~~v~vwd~ 123 (179)
+.|-+. ..|+......++.+|+..+|+....+........++.+.| |.+.+...+..|.+.+-+.
T Consensus 115 l~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~ 185 (1062)
T KOG1912|consen 115 LCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKD 185 (1062)
T ss_pred eeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEec
Confidence 999875 3567777788999999999988877765556667788877 5566666666676665543
No 325
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=6.4e-06 Score=60.65 Aligned_cols=73 Identities=14% Similarity=0.223 Sum_probs=60.6
Q ss_pred CCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEE-EEEEccCCCeEEEEeCCCcE
Q 038439 94 MNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFIS-AVCWKSDSPTMLTANSQGTI 172 (179)
Q Consensus 94 ~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~dg~i 172 (179)
...+..+.|+|.-..||.+..+|.|.+..+. .+.+..+... ...++ +++|.|||+.|++|-.||+|
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p------------~~~v~~sL~W~~DGkllaVg~kdG~I 86 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIP------------GENVTASLCWRPDGKLLAVGFKDGTI 86 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCC------------CCccceeeeecCCCCEEEEEecCCeE
Confidence 4467889999999999999999999999887 6666555532 33444 99999999999999999999
Q ss_pred EEEeecC
Q 038439 173 KVLVLAA 179 (179)
Q Consensus 173 ~iwd~~~ 179 (179)
++.|+++
T Consensus 87 ~L~Dve~ 93 (665)
T KOG4640|consen 87 RLHDVEK 93 (665)
T ss_pred EEEEccC
Confidence 9999753
No 326
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.24 E-value=9.3e-05 Score=57.27 Aligned_cols=121 Identities=12% Similarity=0.121 Sum_probs=80.5
Q ss_pred CccEEEEEcCCceeEEeecCCCceeEEEEcCC--------CCeEEEEe---------C--CCcee-----eecccCceeE
Q 038439 3 YGKVKVWCTRQEASVLNIDMKANICCVKYNPG--------SSNYIAKY---------Q--STAPC-----VHGHKKAVSY 58 (179)
Q Consensus 3 d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~--------~~~~~~~~---------~--~~~~~-----~~~~~~~i~~ 58 (179)
.+.|+-.|++.|+.+........+.-..+.|+ .+.++... + ..+.+ ........+|
T Consensus 503 ~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~ 582 (794)
T PF08553_consen 503 PNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSC 582 (794)
T ss_pred CCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceE
Confidence 46778888899998888874443333444442 22344433 1 11122 1123445677
Q ss_pred EEEeeCCeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcC
Q 038439 59 VKFLSNDELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKE 124 (179)
Q Consensus 59 ~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~ 124 (179)
++-..+++++.|+.+|.||+||--..+....+.+-..+|..+..+.||+++++.+ +.++.+++..
T Consensus 583 ~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t~ 647 (794)
T PF08553_consen 583 FATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDTL 647 (794)
T ss_pred EEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEEe
Confidence 7766669999999999999999544444455556678999999999999987666 4667788753
No 327
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=98.16 E-value=0.00029 Score=40.97 Aligned_cols=100 Identities=18% Similarity=0.265 Sum_probs=67.3
Q ss_pred eeEEEEee---C--CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCcccc
Q 038439 56 VSYVKFLS---N--DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVT 130 (179)
Q Consensus 56 i~~~~~~~---~--~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~ 130 (179)
|+++++.+ + +.|+.||.|..||+|+-. +.+..+.. ...+.++.-... ..|+.+..+|+|-+|+-.. .+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~--Rl- 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ--RL- 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCcc--ee-
Confidence 55666554 3 689999999999999744 56777764 555666765554 5688889999999998632 22
Q ss_pred ccccCCCCCCCCcccCCcceEEEEEEcc---CC-CeEEEEeCCCcEEE
Q 038439 131 WHRFSSPDMDDTDEDAGSYFISAVCWKS---DS-PTMLTANSQGTIKV 174 (179)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~-~~l~~~~~dg~i~i 174 (179)
++.++ +..+.++.+.. +| .-|++|-.+|.|.+
T Consensus 75 -WRiKS-----------K~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 75 -WRIKS-----------KNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred -eeecc-----------CCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 22221 33466666543 22 36889999998754
No 328
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=4.8e-05 Score=54.22 Aligned_cols=174 Identities=10% Similarity=-0.038 Sum_probs=103.2
Q ss_pred CccEEEEEcCCce---eEEee-cCCCceeEEEEcCCCCeEEEEe-CCCcee----eec-----------ccCceeEEEEe
Q 038439 3 YGKVKVWCTRQEA---SVLNI-DMKANICCVKYNPGSSNYIAKY-QSTAPC----VHG-----------HKKAVSYVKFL 62 (179)
Q Consensus 3 d~~i~vwd~~~~~---~~~~~-~~~~~v~~~~~~~~~~~~~~~~-~~~~~~----~~~-----------~~~~i~~~~~~ 62 (179)
||.++.|.-..-. -++.+ .|-..|.+++.+-++ .++.+. .....+ +.. -.+.+ ++..+
T Consensus 29 DGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg-~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a-~wv~s 106 (558)
T KOG0882|consen 29 DGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDG-WLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFA-EWVTS 106 (558)
T ss_pred chhhhhcCCCCccceeehhhhHHHHHHHHhhhccccc-eeEeeccCcccceeEEEeeccchhhhcccccCCCce-EEecC
Confidence 5677777643211 22222 256778888888888 455553 212111 110 11111 11222
Q ss_pred eC---CeEEEec-CCCcEEEEecCCC--cceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCC-Cccc---ccc
Q 038439 63 SN---DELASAS-TDSTLRLWDVKEN--LPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEI-SKPV---TWH 132 (179)
Q Consensus 63 ~~---~~l~~~~-~d~~v~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~-~~~~---~~~ 132 (179)
+. ..++.+. .++.+.++|-... +....-+-|.++|..+.+++-+..+++....|.|.-|.... .+.. ..+
T Consensus 107 kGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~ 186 (558)
T KOG0882|consen 107 KGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNF 186 (558)
T ss_pred CCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccc
Confidence 32 2444333 4678888886643 22333446889999999999999999999999999999873 1111 111
Q ss_pred ccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439 133 RFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA 179 (179)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 179 (179)
.+....-...+... .....++.|+|++..+.+-+.|..|+++++.+
T Consensus 187 ~~K~eTdLy~f~K~-Kt~pts~Efsp~g~qistl~~DrkVR~F~~Kt 232 (558)
T KOG0882|consen 187 ELKHETDLYGFPKA-KTEPTSFEFSPDGAQISTLNPDRKVRGFVFKT 232 (558)
T ss_pred cccccchhhccccc-ccCccceEEccccCcccccCcccEEEEEEecc
Confidence 11111111111222 55678999999999999999999999998753
No 329
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.11 E-value=0.00035 Score=53.31 Aligned_cols=120 Identities=13% Similarity=0.196 Sum_probs=85.1
Q ss_pred CCCccEEEEEcCCceeEEeecCCCceeEEEEcCC-----CCeEEEEeCC------------Ccee-eecccCceeEEEEe
Q 038439 1 MAYGKVKVWCTRQEASVLNIDMKANICCVKYNPG-----SSNYIAKYQS------------TAPC-VHGHKKAVSYVKFL 62 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~~~~------------~~~~-~~~~~~~i~~~~~~ 62 (179)
|+||+|.|-.+.+.+....+..+.++.+++++|+ ..++++.|.. ...+ +....++|.++.|.
T Consensus 90 S~DGkv~I~sl~~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~~v~l~~~eG~I~~i~W~ 169 (846)
T KOG2066|consen 90 SDDGKVVIGSLFTDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKDSVVLSEGEGPIHSIKWR 169 (846)
T ss_pred cCCCcEEEeeccCCccceeEecCCcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCccceeeecCccceEEEEec
Confidence 6899999999999988888999999999999998 3355665522 2222 55567899999997
Q ss_pred eCCeEEEecCCCcEEEEecCCCcceeeecCCCCCe------EEEEEeeCCCEEEEeccCCcEEEEEcC
Q 038439 63 SNDELASASTDSTLRLWDVKENLPVRTFRGHMNEK------NFVGLTVNSEYIACGSESNEVYVYHKE 124 (179)
Q Consensus 63 ~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v------~~~~~~~~~~~~~~~~~d~~v~vwd~~ 124 (179)
- ++++-++.+| |++||...++.+..+......+ ..+.|.++.+ ++.| ...+|++..++
T Consensus 170 g-~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 170 G-NLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIG-WGDSVKICSIK 233 (846)
T ss_pred C-cEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEEe-cCCeEEEEEEe
Confidence 4 4666666555 8999999888777665433322 3466766554 4444 44568888877
No 330
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.10 E-value=6.8e-05 Score=54.50 Aligned_cols=123 Identities=7% Similarity=0.065 Sum_probs=75.4
Q ss_pred cEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe-CCCce-----------e--eecccCceeEEEEeeC-CeEE-
Q 038439 5 KVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY-QSTAP-----------C--VHGHKKAVSYVKFLSN-DELA- 68 (179)
Q Consensus 5 ~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~-----------~--~~~~~~~i~~~~~~~~-~~l~- 68 (179)
.+.++|+++++........+.-..-+|+|+|++++.+. +.+.+ + +....+.-..-.|+|+ ..++
T Consensus 219 ~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf 298 (425)
T COG0823 219 RIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVF 298 (425)
T ss_pred eEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEE
Confidence 57888988888777777777778889999998777776 11111 1 1212222224568899 5554
Q ss_pred EecCCCc--EEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEecc-CCc--EEEEEcCCCcc
Q 038439 69 SASTDST--LRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSE-SNE--VYVYHKEISKP 128 (179)
Q Consensus 69 ~~~~d~~--v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-d~~--v~vwd~~~~~~ 128 (179)
+.+..|. |.+.|...+.. ..+......-..-.|+|||++|+..+. +|. |.+.|+.++..
T Consensus 299 ~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~ 362 (425)
T COG0823 299 TSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK 362 (425)
T ss_pred EeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCc
Confidence 4455555 45556554433 444333332236789999999876664 344 66777766553
No 331
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.05 E-value=0.00028 Score=51.38 Aligned_cols=142 Identities=17% Similarity=0.165 Sum_probs=81.3
Q ss_pred CCCceeEEEEcCCCCeEEEEe-CCCc---ee-----------eecccCceeEEEEeeC--CeEEEecCCCc--EEEEecC
Q 038439 22 MKANICCVKYNPGSSNYIAKY-QSTA---PC-----------VHGHKKAVSYVKFLSN--DELASASTDST--LRLWDVK 82 (179)
Q Consensus 22 ~~~~v~~~~~~~~~~~~~~~~-~~~~---~~-----------~~~~~~~i~~~~~~~~--~~l~~~~~d~~--v~iwd~~ 82 (179)
....+..-+|+|++..+.... ..++ .. +-...+.-...+|+|+ ..+++...|+. |.+.|+.
T Consensus 191 ~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~ 270 (425)
T COG0823 191 SGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLD 270 (425)
T ss_pred cCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCC
Confidence 455678888999887766554 1111 11 1111122234579999 44556666775 5566777
Q ss_pred CCcceeeecCCCCCeEEEEEeeCCCEEEEecc-CCc--EEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccC
Q 038439 83 ENLPVRTFRGHMNEKNFVGLTVNSEYIACGSE-SNE--VYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSD 159 (179)
Q Consensus 83 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-d~~--v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 159 (179)
.+. +..+....+.-..-.|+|||++++-.+. .|. |.+++++.+.. ..+... ...-....|+|+
T Consensus 271 ~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~------------~~~~~~p~~Spd 336 (425)
T COG0823 271 GKN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFS------------GGGNSNPVWSPD 336 (425)
T ss_pred CCc-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeecc------------CCCCcCccCCCC
Confidence 665 3334443443446679999999875543 444 56666665554 222221 111226779999
Q ss_pred CCeEEEEeCC-Cc--EEEEee
Q 038439 160 SPTMLTANSQ-GT--IKVLVL 177 (179)
Q Consensus 160 ~~~l~~~~~d-g~--i~iwd~ 177 (179)
|++++..+.. |. |.+.|+
T Consensus 337 G~~i~~~~~~~g~~~i~~~~~ 357 (425)
T COG0823 337 GDKIVFESSSGGQWDIDKNDL 357 (425)
T ss_pred CCEEEEEeccCCceeeEEecc
Confidence 9999887753 44 444443
No 332
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=98.02 E-value=0.00056 Score=50.75 Aligned_cols=142 Identities=9% Similarity=0.109 Sum_probs=89.3
Q ss_pred CCceeEEEEcCCCCeEEEEe---CCCcee-----eecccCceeEEEEeeC-----CeEEEecCCCcEEEEecCC-----C
Q 038439 23 KANICCVKYNPGSSNYIAKY---QSTAPC-----VHGHKKAVSYVKFLSN-----DELASASTDSTLRLWDVKE-----N 84 (179)
Q Consensus 23 ~~~v~~~~~~~~~~~~~~~~---~~~~~~-----~~~~~~~i~~~~~~~~-----~~l~~~~~d~~v~iwd~~~-----~ 84 (179)
-.++..++|. ||++++.+. ..+++. .-+.-..|..+.|.|- ..+++.-..+.|.+|.+.. .
T Consensus 19 iHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds~viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~ 97 (671)
T PF15390_consen 19 IHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDSKVIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERN 97 (671)
T ss_pred hccccceEec-CCCEEEEEeeeeeCCccccCCccEeeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccc
Confidence 3578999998 555666655 333322 4455567889999986 3577777788999999862 2
Q ss_pred cceeeecCCCC-----CeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccC
Q 038439 85 LPVRTFRGHMN-----EKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSD 159 (179)
Q Consensus 85 ~~~~~~~~~~~-----~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 159 (179)
+.+....++.. -...+.|+|....+++-.....-.+++++............ .+.|.|.+|.+|
T Consensus 98 K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~-----------~G~IhCACWT~D 166 (671)
T PF15390_consen 98 KLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKT-----------SGLIHCACWTKD 166 (671)
T ss_pred cceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccC-----------CceEEEEEecCc
Confidence 33222222111 12346799998888776655544566766543322222211 678999999999
Q ss_pred CCeEEEEeC-CCcEEEEe
Q 038439 160 SPTMLTANS-QGTIKVLV 176 (179)
Q Consensus 160 ~~~l~~~~~-dg~i~iwd 176 (179)
|+.|+++-. .=.-++||
T Consensus 167 G~RLVVAvGSsLHSyiWd 184 (671)
T PF15390_consen 167 GQRLVVAVGSSLHSYIWD 184 (671)
T ss_pred CCEEEEEeCCeEEEEEec
Confidence 988766543 33567787
No 333
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.99 E-value=2.4e-05 Score=35.75 Aligned_cols=32 Identities=47% Similarity=0.779 Sum_probs=29.1
Q ss_pred eecccCceeEEEEeeC-CeEEEecCCCcEEEEe
Q 038439 49 VHGHKKAVSYVKFLSN-DELASASTDSTLRLWD 80 (179)
Q Consensus 49 ~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd 80 (179)
+..|...|.++.|.+. ..+++++.|+.+++|+
T Consensus 8 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 8 LKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 6678889999999998 8999999999999996
No 334
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.99 E-value=0.00036 Score=50.40 Aligned_cols=86 Identities=10% Similarity=0.157 Sum_probs=54.6
Q ss_pred eeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEcc-----CC--
Q 038439 88 RTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKS-----DS-- 160 (179)
Q Consensus 88 ~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~-- 160 (179)
..+....++|.+++.+ |=-+++.|.++|.+.|.|+|....+.......+. ........++++.|.. |+
T Consensus 80 ~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~----~~~~~~~~vt~ieF~vm~~~~D~yS 154 (395)
T PF08596_consen 80 TLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESF----LSKSSSSYVTSIEFSVMTLGGDGYS 154 (395)
T ss_dssp EEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG------T-SS----EEEEEEEEEE-TTSSSE
T ss_pred hheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccc----cccccccCeeEEEEEEEecCCCccc
Confidence 3344557889999987 5458999999999999999887766553333210 0111155678888862 33
Q ss_pred -CeEEEEeCCCcEEEEeec
Q 038439 161 -PTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 161 -~~l~~~~~dg~i~iwd~~ 178 (179)
-.+++|+..|.+.+|.+-
T Consensus 155 Si~L~vGTn~G~v~~fkIl 173 (395)
T PF08596_consen 155 SICLLVGTNSGNVLTFKIL 173 (395)
T ss_dssp EEEEEEEETTSEEEEEEEE
T ss_pred ceEEEEEeCCCCEEEEEEe
Confidence 468899999999999763
No 335
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.97 E-value=0.0001 Score=57.81 Aligned_cols=102 Identities=15% Similarity=0.132 Sum_probs=73.7
Q ss_pred CeEEEecCCCcEEEEecCCC-cceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCc
Q 038439 65 DELASASTDSTLRLWDVKEN-LPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTD 143 (179)
Q Consensus 65 ~~l~~~~~d~~v~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~ 143 (179)
..++.|+..|.+-..|.... .+...=....++|.+++|+.+|+.++.|-.+|.|.+||...+++++.+....+.
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap----- 174 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAP----- 174 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCc-----
Confidence 56888888888888887653 111222234678999999999999999999999999999999888776654321
Q ss_pred ccCCcceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439 144 EDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVL 177 (179)
Q Consensus 144 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 177 (179)
...+..+.+..++..++++...|. +|.+
T Consensus 175 ----~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 175 ----VTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ----cceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 334445555555667888877776 5543
No 336
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.89 E-value=0.00028 Score=54.70 Aligned_cols=117 Identities=14% Similarity=0.165 Sum_probs=84.8
Q ss_pred CccEEEEEcCCceeEEeec-CCCceeEEEEcCCCCeEEEEeCC-------------------Ccee--eecccCceeEEE
Q 038439 3 YGKVKVWCTRQEASVLNID-MKANICCVKYNPGSSNYIAKYQS-------------------TAPC--VHGHKKAVSYVK 60 (179)
Q Consensus 3 d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~-------------------~~~~--~~~~~~~i~~~~ 60 (179)
-|+|.+-|.++.+.++++. |.+.|..+..+ |+.++++|.. .+.+ +.-+.++ .-+.
T Consensus 196 ~G~V~LrD~~s~~~iht~~aHs~siSDfDv~--GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flr 272 (1118)
T KOG1275|consen 196 RGTVFLRDPNSFETIHTFDAHSGSISDFDVQ--GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLR 272 (1118)
T ss_pred cceEEeecCCcCceeeeeeccccceeeeecc--CCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhh
Confidence 5889999999999999997 88888776664 5578888811 1111 1112222 4467
Q ss_pred EeeC--CeEEEecCCCcEEEEe---cCCC-cceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEE
Q 038439 61 FLSN--DELASASTDSTLRLWD---VKEN-LPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYH 122 (179)
Q Consensus 61 ~~~~--~~l~~~~~d~~v~iwd---~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd 122 (179)
|+|. ..++.++..|...+-| +... ..+..+....+.+..++++++++.++.|..+|.|.+|-
T Consensus 273 f~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 273 FHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred hcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 8888 7888999999999988 3332 12233333445588999999999999999999999998
No 337
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.83 E-value=0.00011 Score=35.89 Aligned_cols=34 Identities=24% Similarity=0.264 Sum_probs=29.9
Q ss_pred CCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCcc
Q 038439 94 MNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKP 128 (179)
Q Consensus 94 ~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~ 128 (179)
...|..++|+|...++|.++.+|.|.++.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 456889999999999999999999999999 5554
No 338
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.82 E-value=0.0043 Score=45.09 Aligned_cols=97 Identities=10% Similarity=0.098 Sum_probs=64.4
Q ss_pred CeEEEecCCCcEEEEecCCCcceeeecCCCC-CeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCc
Q 038439 65 DELASASTDSTLRLWDVKENLPVRTFRGHMN-EKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTD 143 (179)
Q Consensus 65 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~ 143 (179)
+.++.++.++.+..+|..+++.+-....... ...+... .+.+++.++.+|.+.+.|..+++.+......
T Consensus 295 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~-------- 364 (394)
T PRK11138 295 GRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVD-------- 364 (394)
T ss_pred CEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcC--------
Confidence 6777888899999999998876544322111 1111112 2557788899999999999999887665542
Q ss_pred ccCCcceEE-EEEEccCCCeEEEEeCCCcEEEEee
Q 038439 144 EDAGSYFIS-AVCWKSDSPTMLTANSQGTIKVLVL 177 (179)
Q Consensus 144 ~~~~~~~i~-~~~~~~~~~~l~~~~~dg~i~iwd~ 177 (179)
...+. ...+ .+..|+.++.||.++.+++
T Consensus 365 ----~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 365 ----SSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred ----CCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 11121 1122 2457889999999998865
No 339
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.78 E-value=6.7e-06 Score=60.79 Aligned_cols=113 Identities=17% Similarity=0.337 Sum_probs=78.7
Q ss_pred eecccCceeEEEEeeC--CeEEEec----CCCcEEEEecCCC--ccee--eecC-CCCCeEEEEEeeCCCEEEEeccCCc
Q 038439 49 VHGHKKAVSYVKFLSN--DELASAS----TDSTLRLWDVKEN--LPVR--TFRG-HMNEKNFVGLTVNSEYIACGSESNE 117 (179)
Q Consensus 49 ~~~~~~~i~~~~~~~~--~~l~~~~----~d~~v~iwd~~~~--~~~~--~~~~-~~~~v~~~~~~~~~~~~~~~~~d~~ 117 (179)
..++..+.++++|++- +.|+.|- .|..+.|||+.++ .+.. .+.. ......+++|-.+.+.+.+|...+.
T Consensus 98 tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~ 177 (783)
T KOG1008|consen 98 TPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRS 177 (783)
T ss_pred cccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccch
Confidence 5567778899999987 6666663 3557999999875 2221 1222 2334557888888888999999999
Q ss_pred EEEEEcCCC-ccccccccCCCCCCCCcccCCcceEEEEEEcc-CCCeEEEEeCCCcEEEEe
Q 038439 118 VYVYHKEIS-KPVTWHRFSSPDMDDTDEDAGSYFISAVCWKS-DSPTMLTANSQGTIKVLV 176 (179)
Q Consensus 118 v~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd 176 (179)
++++|++.. .....+. ...+..+...| .++++++-. ||.|.+||
T Consensus 178 ~~ifdlRqs~~~~~svn--------------Tk~vqG~tVdp~~~nY~cs~~-dg~iAiwD 223 (783)
T KOG1008|consen 178 VHIFDLRQSLDSVSSVN--------------TKYVQGITVDPFSPNYFCSNS-DGDIAIWD 223 (783)
T ss_pred hhhhhhhhhhhhhhhhh--------------hhhcccceecCCCCCceeccc-cCceeecc
Confidence 999999843 2232222 33466677788 777776655 99999999
No 340
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.77 E-value=0.0045 Score=41.69 Aligned_cols=70 Identities=17% Similarity=0.120 Sum_probs=55.8
Q ss_pred CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCcccccccc
Q 038439 65 DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRF 134 (179)
Q Consensus 65 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~ 134 (179)
++++.|+..+.+.+.+..++.+...+..-...-......+++..++.|+.|+..+..|.++...+...+.
T Consensus 64 dfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskc 133 (354)
T KOG4649|consen 64 DFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKC 133 (354)
T ss_pred CEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEeccc
Confidence 7789999999999999999988877764332222345678899999999999999999999877765443
No 341
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.74 E-value=0.0021 Score=48.57 Aligned_cols=59 Identities=12% Similarity=0.084 Sum_probs=42.6
Q ss_pred CCCEEEEeccCCcEEEEEcCC-----CccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeC-CCcEEEEeec
Q 038439 105 NSEYIACGSESNEVYVYHKEI-----SKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANS-QGTIKVLVLA 178 (179)
Q Consensus 105 ~~~~~~~~~~d~~v~vwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~ 178 (179)
+|++... .++.|.+.|.++ .+.+..+.. ....+.+.++|||+++++++. ++++.|.|++
T Consensus 287 dGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPV-------------GKsPHGV~vSPDGkylyVanklS~tVSVIDv~ 351 (635)
T PRK02888 287 AGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPV-------------PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVR 351 (635)
T ss_pred CCCEEEE--CCCEEEEEECCccccCCcceEEEEEC-------------CCCccceEECCCCCEEEEeCCCCCcEEEEECh
Confidence 5665554 256788999887 233333333 556788999999999888776 8999999975
No 342
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.73 E-value=0.002 Score=43.27 Aligned_cols=103 Identities=8% Similarity=0.003 Sum_probs=72.2
Q ss_pred EeeC--CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCC
Q 038439 61 FLSN--DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPD 138 (179)
Q Consensus 61 ~~~~--~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~ 138 (179)
..++ .+++.||..+.+.--|..+++....-.. ...+.+-+.- -|++++.|+..|.+++.+..++.....+...
T Consensus 18 V~~dskT~v~igSHs~~~~avd~~sG~~~We~il-g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~--- 92 (354)
T KOG4649|consen 18 VCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAIL-GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL--- 92 (354)
T ss_pred EecCCceEEEEecCCceEEEecCCCCcEEeehhh-CceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeeh---
Confidence 3445 6777888888888888888876543221 1222222211 4788999999999999999999877665542
Q ss_pred CCCCcccCCcceE-EEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439 139 MDDTDEDAGSYFI-SAVCWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 139 ~~~~~~~~~~~~i-~~~~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
..| ......+++..+.+|+.|++.+..|.+
T Consensus 93 ----------~~vk~~a~~d~~~glIycgshd~~~yalD~~ 123 (354)
T KOG4649|consen 93 ----------ETVKVRAQCDFDGGLIYCGSHDGNFYALDPK 123 (354)
T ss_pred ----------hhhccceEEcCCCceEEEecCCCcEEEeccc
Confidence 122 234456789999999999999988865
No 343
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.73 E-value=8.8e-05 Score=57.09 Aligned_cols=107 Identities=14% Similarity=0.150 Sum_probs=79.4
Q ss_pred eEEEEeeC-CeEEEecC----CCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccc
Q 038439 57 SYVKFLSN-DELASAST----DSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTW 131 (179)
Q Consensus 57 ~~~~~~~~-~~l~~~~~----d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~ 131 (179)
+-..|+|. .+++.++. .|.|.||- .+|++-+.+.- +-.+.+++|+|..-.++.|-.-|.+.+|...+.+.-..
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~-P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv 96 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTY-PVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTV 96 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccccc-ceehhhhccChHHHHHhhccccceeEEEecCCceeeee
Confidence 34579999 88877763 57788874 55665544332 22356799999887888998899999999876543222
Q ss_pred cccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439 132 HRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVL 177 (179)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 177 (179)
.. .|..+|..+.|+++|..++++..-|.+.+|.+
T Consensus 97 ~~------------th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~ 130 (1416)
T KOG3617|consen 97 VE------------THPAPIQGLDWSHDGTVLMTLDNPGSVHLWRY 130 (1416)
T ss_pred cc------------CCCCCceeEEecCCCCeEEEcCCCceeEEEEe
Confidence 11 12778999999999999999999999999975
No 344
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.73 E-value=0.0004 Score=53.41 Aligned_cols=115 Identities=10% Similarity=0.096 Sum_probs=72.6
Q ss_pred EeeC-CeEEEecCCCcEEEEecCCCcceeeecCCCCC-eEEEEEeeCCCEEEEeccCC-----cEEEEEcCCCcccc-cc
Q 038439 61 FLSN-DELASASTDSTLRLWDVKENLPVRTFRGHMNE-KNFVGLTVNSEYIACGSESN-----EVYVYHKEISKPVT-WH 132 (179)
Q Consensus 61 ~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~d~-----~v~vwd~~~~~~~~-~~ 132 (179)
|++. +.++.|+.+|.|.+.+-+ -+.++.++.+... +..+....+..++++.++|+ .+++||++.-+.-. ..
T Consensus 31 ~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~ 109 (933)
T KOG2114|consen 31 CSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQ 109 (933)
T ss_pred EcCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcc
Confidence 5677 899999999999888743 3445677776666 44444433446777776654 48999987542211 00
Q ss_pred ccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEe
Q 038439 133 RFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLV 176 (179)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd 176 (179)
....+.......+....++..++.+.+-+.+++|-.+|.|..+.
T Consensus 110 c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~ 153 (933)
T KOG2114|consen 110 CLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYK 153 (933)
T ss_pred eeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEc
Confidence 00000000000111256788899999999999999999988763
No 345
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.70 E-value=0.0046 Score=49.67 Aligned_cols=140 Identities=15% Similarity=0.200 Sum_probs=84.3
Q ss_pred CceeEEEEcCCCCeEEEEeCCCcee-----------eecccCceeEEEEeeC-CeEEEecCCCcEEEEec----CCC---
Q 038439 24 ANICCVKYNPGSSNYIAKYQSTAPC-----------VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDV----KEN--- 84 (179)
Q Consensus 24 ~~v~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~----~~~--- 84 (179)
..|.++.|..+...++++...+..+ ...-...|.+++|+|| ..++..+..+++.+-.- -..
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L 148 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPL 148 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcccc
Confidence 4688888877765555544222222 2334567999999999 88877777777654321 111
Q ss_pred ----------------cceeeecCC---------------------CCCeEEEEEeeCCCEEEEe-----ccCCcEEEEE
Q 038439 85 ----------------LPVRTFRGH---------------------MNEKNFVGLTVNSEYIACG-----SESNEVYVYH 122 (179)
Q Consensus 85 ----------------~~~~~~~~~---------------------~~~v~~~~~~~~~~~~~~~-----~~d~~v~vwd 122 (179)
+.-.+|.+. ...-..+.|.-||+++++. ...+.+++||
T Consensus 149 ~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~d 228 (1265)
T KOG1920|consen 149 DADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYD 228 (1265)
T ss_pred ccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEec
Confidence 111122210 0112348899999999883 3337899999
Q ss_pred cCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeC---CCcEEEEe
Q 038439 123 KEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANS---QGTIKVLV 176 (179)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~iwd 176 (179)
.+ +..-..-... ...-.+++|-|.|..+++-.. |+.|.+|.
T Consensus 229 rE-g~Lns~se~~------------~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffE 272 (1265)
T KOG1920|consen 229 RE-GALNSTSEPV------------EGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFE 272 (1265)
T ss_pred cc-chhhcccCcc------------cccccceeecCCCCeEeeeeecCCCCcEEEEe
Confidence 87 4432222211 233467899999999887443 55677775
No 346
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.66 E-value=0.0031 Score=45.80 Aligned_cols=159 Identities=7% Similarity=-0.052 Sum_probs=83.0
Q ss_pred CCccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe----------CCCcee--eecccCceeEE--EEee---C
Q 038439 2 AYGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY----------QSTAPC--VHGHKKAVSYV--KFLS---N 64 (179)
Q Consensus 2 ~d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----------~~~~~~--~~~~~~~i~~~--~~~~---~ 64 (179)
.+|.+.-+|.++++.+-..+....+.+--.-.++ .+++.. .+++.+ .... .+...+ .-+| +
T Consensus 128 ~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~~-~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~~~~~sP~v~~ 205 (394)
T PRK11138 128 EKGQVYALNAEDGEVAWQTKVAGEALSRPVVSDG-LVLVHTSNGMLQALNESDGAVKWTVNLD-VPSLTLRGESAPATAF 205 (394)
T ss_pred CCCEEEEEECCCCCCcccccCCCceecCCEEECC-EEEEECCCCEEEEEEccCCCEeeeecCC-CCcccccCCCCCEEEC
Confidence 4678888999888877766544333221000122 333322 344444 1111 110000 0122 1
Q ss_pred CeEEEecCCCcEEEEecCCCcceeeecCCCC-------CeEEEEEee--CCCEEEEeccCCcEEEEEcCCCccccccccC
Q 038439 65 DELASASTDSTLRLWDVKENLPVRTFRGHMN-------EKNFVGLTV--NSEYIACGSESNEVYVYHKEISKPVTWHRFS 135 (179)
Q Consensus 65 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~-------~v~~~~~~~--~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~ 135 (179)
+.++.++.++.+...|..+++.+........ ....+..+| .+..++.++.++.+..+|..+++.+......
T Consensus 206 ~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~ 285 (394)
T PRK11138 206 GGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYG 285 (394)
T ss_pred CEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCC
Confidence 4667778889999999998876654431110 001111222 2456777778999999999999876544321
Q ss_pred CCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439 136 SPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 136 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
.. ..+. ..+..++.++.+|.+..+|.+
T Consensus 286 ~~--------------~~~~--~~~~~vy~~~~~g~l~ald~~ 312 (394)
T PRK11138 286 SV--------------NDFA--VDGGRIYLVDQNDRVYALDTR 312 (394)
T ss_pred Cc--------------cCcE--EECCEEEEEcCCCeEEEEECC
Confidence 10 1111 134556666666666666543
No 347
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.61 E-value=0.0035 Score=48.57 Aligned_cols=119 Identities=18% Similarity=0.341 Sum_probs=73.6
Q ss_pred eecccCc-eeEEEEeeC-CeEEEecCCC-----cEEEEecCCC------cce---eee--cC--CCCCeEEEEEeeCCCE
Q 038439 49 VHGHKKA-VSYVKFLSN-DELASASTDS-----TLRLWDVKEN------LPV---RTF--RG--HMNEKNFVGLTVNSEY 108 (179)
Q Consensus 49 ~~~~~~~-i~~~~~~~~-~~l~~~~~d~-----~v~iwd~~~~------~~~---~~~--~~--~~~~v~~~~~~~~~~~ 108 (179)
++++... |..+....+ ++|++.+.|+ .+++||+... .++ +.+ +. ...++.+++.+.+-..
T Consensus 60 fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~ 139 (933)
T KOG2114|consen 60 FQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKT 139 (933)
T ss_pred heecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccE
Confidence 4555555 444433344 6788777655 4899998753 122 111 11 2567888999999889
Q ss_pred EEEeccCCcEEEEEcCCCcc---ccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439 109 IACGSESNEVYVYHKEISKP---VTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 109 ~~~~~~d~~v~vwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
+|+|-.+|.|..+.-.-.+. ...+... +..+|+.+.+..++..++....-..|.+|.+.
T Consensus 140 Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~-----------~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~ 201 (933)
T KOG2114|consen 140 IVCGFTNGLVICYKGDILRDRGSRQDYSHR-----------GKEPITGLALRSDGKSVLFVATTEQVMLYSLS 201 (933)
T ss_pred EEEEecCcEEEEEcCcchhccccceeeecc-----------CCCCceeeEEecCCceeEEEEecceeEEEEec
Confidence 99999999998885321111 1111111 16789999998888773333334467777654
No 348
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.60 E-value=0.00031 Score=34.35 Aligned_cols=31 Identities=16% Similarity=0.280 Sum_probs=28.1
Q ss_pred cceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439 148 SYFISAVCWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 148 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
...|..++|+|...+||.++.+|.|.+|.++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 5579999999999999999999999999863
No 349
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.56 E-value=0.0085 Score=40.57 Aligned_cols=150 Identities=10% Similarity=0.120 Sum_probs=77.1
Q ss_pred CCCceeEEEEcCCCCeEEEEeCC----------Ccee----eecccCceeEEEEeeCCeEEEec-CCCcEEEEecCCCc-
Q 038439 22 MKANICCVKYNPGSSNYIAKYQS----------TAPC----VHGHKKAVSYVKFLSNDELASAS-TDSTLRLWDVKENL- 85 (179)
Q Consensus 22 ~~~~v~~~~~~~~~~~~~~~~~~----------~~~~----~~~~~~~i~~~~~~~~~~l~~~~-~d~~v~iwd~~~~~- 85 (179)
....+..++|+|+...++++.+. ++.+ +.+ .+..-.|++..++.++..+ .++.+.++++....
T Consensus 20 ~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g-~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~ 98 (248)
T PF06977_consen 20 ILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDG-FGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTT 98 (248)
T ss_dssp --S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS--SSEEEEEE-STTEEEEEETTTTEEEEEEE----T
T ss_pred ccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCC-CCCceeEEEECCCEEEEEEcCCCcEEEEEEecccc
Confidence 34569999999998789888722 2222 222 2345567776664444444 58889888884321
Q ss_pred -----ceeeec-----CCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCC---CccccccccCCCCCCCCcccCCcceEE
Q 038439 86 -----PVRTFR-----GHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEI---SKPVTWHRFSSPDMDDTDEDAGSYFIS 152 (179)
Q Consensus 86 -----~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~ 152 (179)
....+. .+...+..++|+|.++.|+++-+.....+|.++. .............. ....-..+.
T Consensus 99 ~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~d~S 174 (248)
T PF06977_consen 99 SLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDD----DKLFVRDLS 174 (248)
T ss_dssp T--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-----HT--SS---
T ss_pred ccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccccccc----ccceecccc
Confidence 111221 2345688999999887777777777777777664 11111110000000 000034578
Q ss_pred EEEEccCC-CeEEEEeCCCcEEEEe
Q 038439 153 AVCWKSDS-PTMLTANSQGTIKVLV 176 (179)
Q Consensus 153 ~~~~~~~~-~~l~~~~~dg~i~iwd 176 (179)
.++++|.. .+++.+..+..|.++|
T Consensus 175 ~l~~~p~t~~lliLS~es~~l~~~d 199 (248)
T PF06977_consen 175 GLSYDPRTGHLLILSDESRLLLELD 199 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEE-
T ss_pred ceEEcCCCCeEEEEECCCCeEEEEC
Confidence 88899854 4555555566666665
No 350
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.50 E-value=0.016 Score=40.86 Aligned_cols=118 Identities=8% Similarity=0.102 Sum_probs=70.8
Q ss_pred ccEEEEEcCCc-----e--eEEeecCCCceeEEEEcCCCCeEEEEe---------CCCc-ee-eecc--cCceeEEEEee
Q 038439 4 GKVKVWCTRQE-----A--SVLNIDMKANICCVKYNPGSSNYIAKY---------QSTA-PC-VHGH--KKAVSYVKFLS 63 (179)
Q Consensus 4 ~~i~vwd~~~~-----~--~~~~~~~~~~v~~~~~~~~~~~~~~~~---------~~~~-~~-~~~~--~~~i~~~~~~~ 63 (179)
|.|.++++.+. + .+.....+++|++++-- .+ .++++. ...+ .+ ...+ .-.+.++....
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~-~lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~ 139 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NG-RLVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFK 139 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TT-EEEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEET
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CC-EEEEeecCEEEEEEccCcccchhhheecceEEEEEEeccc
Confidence 89999999884 2 33344578899999877 44 444443 2222 22 1112 22444444332
Q ss_pred CCeEEEecCCCcEEEEecCC-Ccceeeec--CCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcC
Q 038439 64 NDELASASTDSTLRLWDVKE-NLPVRTFR--GHMNEKNFVGLTVNSEYIACGSESNEVYVYHKE 124 (179)
Q Consensus 64 ~~~l~~~~~d~~v~iwd~~~-~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~ 124 (179)
++++.|.....+.++..+. ...+..+. .....+.++.+-++++.++.+..+|.+.++...
T Consensus 140 -~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 140 -NYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp -TEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred -cEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 6888888888888775443 22233332 234457788888777789999999999999876
No 351
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.47 E-value=0.0033 Score=49.09 Aligned_cols=98 Identities=16% Similarity=0.142 Sum_probs=64.5
Q ss_pred eEEEecCCCcEEEEecCCCc--cee-eec--CCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCC
Q 038439 66 ELASASTDSTLRLWDVKENL--PVR-TFR--GHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMD 140 (179)
Q Consensus 66 ~l~~~~~d~~v~iwd~~~~~--~~~-~~~--~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~ 140 (179)
..+.|-.+..+..||.|-.. ++. ..+ .......|++-..+| +||+|+.+|.|++||.- +..-.+. +.+-
T Consensus 544 ~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~-g~~AKT~-lp~l--- 617 (794)
T PF08553_consen 544 QTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRL-GKRAKTA-LPGL--- 617 (794)
T ss_pred ceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeeccc-chhhhhc-CCCC---
Confidence 45666777889999988532 221 111 123345667766666 78999999999999943 3221111 1111
Q ss_pred CCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439 141 DTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVL 177 (179)
Q Consensus 141 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 177 (179)
+.+|..+..+.||+++++.+.. .+.+++.
T Consensus 618 -------G~pI~~iDvt~DGkwilaTc~t-yLlLi~t 646 (794)
T PF08553_consen 618 -------GDPIIGIDVTADGKWILATCKT-YLLLIDT 646 (794)
T ss_pred -------CCCeeEEEecCCCcEEEEeecc-eEEEEEE
Confidence 6789999999999999877754 5666653
No 352
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.45 E-value=0.0047 Score=45.52 Aligned_cols=119 Identities=13% Similarity=0.145 Sum_probs=79.6
Q ss_pred cEEEEEcCCceeEEeecCCCceeEEEEcCCCC--e------EEEEeCC----------Cc-ee--eecc----cCceeEE
Q 038439 5 KVKVWCTRQEASVLNIDMKANICCVKYNPGSS--N------YIAKYQS----------TA-PC--VHGH----KKAVSYV 59 (179)
Q Consensus 5 ~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~--~------~~~~~~~----------~~-~~--~~~~----~~~i~~~ 59 (179)
.++=.|++.|+.+........|.-+.+.|+.. + ++-..+. +. .+ ..+| .....|+
T Consensus 357 ~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~ 436 (644)
T KOG2395|consen 357 KLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCF 436 (644)
T ss_pred cceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccccccccccee
Confidence 45556778888888877666688888888642 1 2222200 11 11 1222 2334555
Q ss_pred EEeeCCeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcC
Q 038439 60 KFLSNDELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKE 124 (179)
Q Consensus 60 ~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~ 124 (179)
+-..+++++.||.+|.||+||-...+....+.+-..+|..+..+.+|++|+..+ +.++.+.++.
T Consensus 437 aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 437 ATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred eecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 554458999999999999999755555556667788999999999999987655 5667777754
No 353
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.44 E-value=0.0098 Score=40.27 Aligned_cols=121 Identities=8% Similarity=0.174 Sum_probs=72.8
Q ss_pred eecccCceeEEEEeeC-C-eEEEecCCCcEEEEecCCCcceeeecCC-CCCeEEEEEeeCCCEEEEeccCCcEEEEEcCC
Q 038439 49 VHGHKKAVSYVKFLSN-D-ELASASTDSTLRLWDVKENLPVRTFRGH-MNEKNFVGLTVNSEYIACGSESNEVYVYHKEI 125 (179)
Q Consensus 49 ~~~~~~~i~~~~~~~~-~-~l~~~~~d~~v~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~ 125 (179)
+.+-...++.+.|.|+ + ++++....+.|...+.. ++.++.+.-. .+....+++.-++.++++--.++.+.++++..
T Consensus 17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~ 95 (248)
T PF06977_consen 17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDD 95 (248)
T ss_dssp -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE--
T ss_pred CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEec
Confidence 4455566999999998 5 55666677888888864 7777766533 35678899988887777766689999999844
Q ss_pred Cc-cc-----cccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439 126 SK-PV-----TWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVL 177 (179)
Q Consensus 126 ~~-~~-----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 177 (179)
.. .+ ..+.+... ..+...+..++|.|.++.|+++-...-..+|.+
T Consensus 96 ~~~~~~~~~~~~~~l~~~-------~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~ 146 (248)
T PF06977_consen 96 DTTSLDRADVQKISLGFP-------NKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEV 146 (248)
T ss_dssp --TT--EEEEEEEE---S----------SS--EEEEEETTTTEEEEEEESSSEEEEEE
T ss_pred cccccchhhceEEecccc-------cCCCcceEEEEEcCCCCEEEEEeCCCChhhEEE
Confidence 22 11 11222111 111456899999998888888777666666654
No 354
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.43 E-value=0.024 Score=41.15 Aligned_cols=162 Identities=14% Similarity=0.094 Sum_probs=104.2
Q ss_pred CccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEeCC--Ccee--ee-----------cccCceeEEEEeeC-Ce
Q 038439 3 YGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKYQS--TAPC--VH-----------GHKKAVSYVKFLSN-DE 66 (179)
Q Consensus 3 d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~~--~~-----------~~~~~i~~~~~~~~-~~ 66 (179)
++.|.+.|..+.+.............++++|++..++++-.. ...+ +. .-..+ ..+++.|+ ..
T Consensus 95 ~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~ 173 (381)
T COG3391 95 SNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNK 173 (381)
T ss_pred CCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCe
Confidence 577888888877777777766688899999999777666521 1111 11 11123 67888899 54
Q ss_pred E-EEecCCCcEEEEecCCCccee-----eecCCCCCeEEEEEeeCCCEEEEeccC---CcEEEEEcCCCccccccccCCC
Q 038439 67 L-ASASTDSTLRLWDVKENLPVR-----TFRGHMNEKNFVGLTVNSEYIACGSES---NEVYVYHKEISKPVTWHRFSSP 137 (179)
Q Consensus 67 l-~~~~~d~~v~iwd~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~~~~~d---~~v~vwd~~~~~~~~~~~~~~~ 137 (179)
+ ++-..++.|.+.|.......+ .+. .......+.++|+|.++++.... +.+...|..++.....-.....
T Consensus 174 vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~-~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~ 252 (381)
T COG3391 174 VYVTNSDDNTVSVIDTSGNSVVRGSVGSLVG-VGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGS 252 (381)
T ss_pred EEEEecCCCeEEEEeCCCcceeccccccccc-cCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecccccc
Confidence 4 444578899999977654442 122 12334678999999977665443 5888899888765543111100
Q ss_pred CCCCCcccCCcceEEEEEEccCCCeEEEEeC-CCcEEEEee
Q 038439 138 DMDDTDEDAGSYFISAVCWKSDSPTMLTANS-QGTIKVLVL 177 (179)
Q Consensus 138 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~ 177 (179)
. ....+...|+|+.+.+... .+.+.+-|.
T Consensus 253 ----------~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~ 282 (381)
T COG3391 253 ----------G-APRGVAVDPAGKAAYVANSQGGTVSVIDG 282 (381)
T ss_pred ----------C-CCCceeECCCCCEEEEEecCCCeEEEEeC
Confidence 2 3456778888888877744 366666654
No 355
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.43 E-value=0.02 Score=40.33 Aligned_cols=107 Identities=15% Similarity=0.154 Sum_probs=67.8
Q ss_pred EEeeC-CeEEEecCCCcEEEEecCCCcce--eeecCC----------CCCeEEEEEeeCCCEEEEecc---C-------C
Q 038439 60 KFLSN-DELASASTDSTLRLWDVKENLPV--RTFRGH----------MNEKNFVGLTVNSEYIACGSE---S-------N 116 (179)
Q Consensus 60 ~~~~~-~~l~~~~~d~~v~iwd~~~~~~~--~~~~~~----------~~~v~~~~~~~~~~~~~~~~~---d-------~ 116 (179)
.+... +.++-.+.+|.|+--|+...... ..+..- .+.-.-+++++....|++... + .
T Consensus 190 ~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgt 269 (342)
T PF06433_consen 190 AYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGT 269 (342)
T ss_dssp EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EE
T ss_pred ceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCce
Confidence 34334 56666788898888888754321 111110 122334778776555544322 1 2
Q ss_pred cEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCC-eEEEE-eCCCcEEEEeecC
Q 038439 117 EVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSP-TMLTA-NSQGTIKVLVLAA 179 (179)
Q Consensus 117 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~-~~dg~i~iwd~~~ 179 (179)
.|.++|+.+++.+..+.+ ...+.++..+.+.+ +|++. ..++.+.+||..+
T Consensus 270 eVWv~D~~t~krv~Ri~l-------------~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~t 321 (342)
T PF06433_consen 270 EVWVYDLKTHKRVARIPL-------------EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAAT 321 (342)
T ss_dssp EEEEEETTTTEEEEEEEE-------------EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT
T ss_pred EEEEEECCCCeEEEEEeC-------------CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcC
Confidence 488889999999888876 56788899988665 66554 4578999999764
No 356
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.39 E-value=0.019 Score=43.93 Aligned_cols=139 Identities=12% Similarity=0.064 Sum_probs=77.1
Q ss_pred ceeEEEEcCCCCeEEEEeC------C-Ccee-e-e--cc------cCceeEEEEeeC-CeEEEecCC------------C
Q 038439 25 NICCVKYNPGSSNYIAKYQ------S-TAPC-V-H--GH------KKAVSYVKFLSN-DELASASTD------------S 74 (179)
Q Consensus 25 ~v~~~~~~~~~~~~~~~~~------~-~~~~-~-~--~~------~~~i~~~~~~~~-~~l~~~~~d------------~ 74 (179)
.+.+.+++|+|..++++.. . ...+ + . +. ....+.-.|+|+ +.+.+.+.. +
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~g 430 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIRDPATG 430 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCCCCCCceECCCCCceEEEecCcceEEEeccCCCc
Confidence 5788999999977766641 1 1122 1 1 10 123677889999 766666432 2
Q ss_pred cEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEE---EEcCCCccccc--cccCCCCCCCCcccCCcc
Q 038439 75 TLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYV---YHKEISKPVTW--HRFSSPDMDDTDEDAGSY 149 (179)
Q Consensus 75 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~v---wd~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 149 (179)
.+.+.++..++... .....|..+.|+|||..++... ++.|++ -....++.... ..+... - ..
T Consensus 431 ql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~--------l-~~ 497 (591)
T PRK13616 431 QLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPG--------L-GD 497 (591)
T ss_pred eEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecc--------c-CC
Confidence 22222333333222 2245699999999999887655 467776 44344431110 001000 0 23
Q ss_pred eEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439 150 FISAVCWKSDSPTMLTANSQGTIKVLVL 177 (179)
Q Consensus 150 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 177 (179)
.+..+.|..++.++ ++..++.-.+|.+
T Consensus 498 ~~~~l~W~~~~~L~-V~~~~~~~~v~~v 524 (591)
T PRK13616 498 TAVSLDWRTGDSLV-VGRSDPEHPVWYV 524 (591)
T ss_pred ccccceEecCCEEE-EEecCCCCceEEE
Confidence 35778999988854 5555555555644
No 357
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.38 E-value=0.026 Score=40.50 Aligned_cols=169 Identities=9% Similarity=0.062 Sum_probs=79.1
Q ss_pred ccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe----------------CCCcee--eeccc--CceeEEEEee
Q 038439 4 GKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY----------------QSTAPC--VHGHK--KAVSYVKFLS 63 (179)
Q Consensus 4 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----------------~~~~~~--~~~~~--~~i~~~~~~~ 63 (179)
..|.--|+.+++....+..+..+..+.|+|..+.+++-+ ..+..+ +..+. ..+.-=-|.|
T Consensus 168 ~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~ 247 (386)
T PF14583_consen 168 CRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVP 247 (386)
T ss_dssp EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-T
T ss_pred ceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccC
Confidence 356667888888877778888999999999988888886 111111 11121 2223334777
Q ss_pred C-CeEEE-----ecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCC----------------cEEEE
Q 038439 64 N-DELAS-----ASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESN----------------EVYVY 121 (179)
Q Consensus 64 ~-~~l~~-----~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~----------------~v~vw 121 (179)
+ ..+.. +..+..|.-+|+.+++....... ......-.++||++++-=+.|. .|+++
T Consensus 248 DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~--p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~ 325 (386)
T PF14583_consen 248 DGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM--PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLF 325 (386)
T ss_dssp TSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE---SEEEEEE-TTSSEEEEEE-------------------EEEEE
T ss_pred CCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeC--CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEe
Confidence 7 33322 22344677778877654332221 1233444567888776433332 45667
Q ss_pred EcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEe-CCCcEEEEe
Q 038439 122 HKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTAN-SQGTIKVLV 176 (179)
Q Consensus 122 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd 176 (179)
+++.++..........-. ....+....=....|+||+++++-.+ ..|...||-
T Consensus 326 ~~~~~~~~~l~~h~~sw~--v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~ 379 (386)
T PF14583_consen 326 DVEAGRFRKLARHDTSWK--VLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYL 379 (386)
T ss_dssp ETTTTEEEEEEE---------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEE
T ss_pred ccccCceeeeeeccCcce--eecCCCccCCCCCccCCCCCEEEEECCCCCCccEEE
Confidence 777655432222110000 00000011124588999999876544 477777764
No 358
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.32 E-value=0.033 Score=40.42 Aligned_cols=159 Identities=13% Similarity=0.119 Sum_probs=106.0
Q ss_pred EEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEeCCCcee--ee-ccc----------CceeEEEEeeC-C-eEEEe
Q 038439 6 VKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKYQSTAPC--VH-GHK----------KAVSYVKFLSN-D-ELASA 70 (179)
Q Consensus 6 i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~--~~-~~~----------~~i~~~~~~~~-~-~l~~~ 70 (179)
+.+++..+.+....+........+...|++..++++......+ +. .+. ..-..+..++. . .++..
T Consensus 13 ~~v~~~~~~~~~~~~~~~~~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~ 92 (381)
T COG3391 13 VSVINTGTNKVTAAISLGRGPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTT 92 (381)
T ss_pred eEEEeecccEEEEEeecCCCCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEec
Confidence 5677777666666666556778888888886666554111111 00 000 12235566666 4 55566
Q ss_pred cCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEecc---CCcEEEEEcCCCccccccccCCCCCCCCcccCC
Q 038439 71 STDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSE---SNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAG 147 (179)
Q Consensus 71 ~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (179)
..+..|.+.|....+.+....... ....++++|+++.++++.. ++.+.+.|..+.+.......
T Consensus 93 ~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~v------------- 158 (381)
T COG3391 93 GDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPV------------- 158 (381)
T ss_pred CCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEec-------------
Confidence 667899999977766666554333 5678999999988776655 68899999988887766433
Q ss_pred cceEEEEEEccCCCeEEEEe-CCCcEEEEeec
Q 038439 148 SYFISAVCWKSDSPTMLTAN-SQGTIKVLVLA 178 (179)
Q Consensus 148 ~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~ 178 (179)
......+++.|+|+.++... .++.|.+.|.+
T Consensus 159 G~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~ 190 (381)
T COG3391 159 GNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTS 190 (381)
T ss_pred CCCcceEEECCCCCeEEEEecCCCeEEEEeCC
Confidence 21227899999999776666 68889888754
No 359
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=97.30 E-value=0.017 Score=45.14 Aligned_cols=82 Identities=17% Similarity=0.135 Sum_probs=51.6
Q ss_pred CCeEEEEEeeCCCEEEEeccCCcEEEEEcC-C-C--------ccccccccCCCCCCCCcccCCcceEEEEEEccC---CC
Q 038439 95 NEKNFVGLTVNSEYIACGSESNEVYVYHKE-I-S--------KPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSD---SP 161 (179)
Q Consensus 95 ~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~-~-~--------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~ 161 (179)
-.|..+.++|+|++++..|..|.. |-.+. . + +.....+.. +.....+...+...|..+.|+|. +.
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~i~Crt~-~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKEINCRTV-PVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEE-EEEeccccCccccccCCCcceeEEEE-EechhhccCCCCceEEEEEEcCCCCCCC
Confidence 357888999999999888876644 44432 1 1 110000000 00011111222568999999995 58
Q ss_pred eEEEEeCCCcEEEEeec
Q 038439 162 TMLTANSQGTIKVLVLA 178 (179)
Q Consensus 162 ~l~~~~~dg~i~iwd~~ 178 (179)
.|++-+.|+.+++||+.
T Consensus 163 ~l~vLtsdn~lR~y~~~ 179 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDIS 179 (717)
T ss_pred eEEEEecCCEEEEEecC
Confidence 99999999999999975
No 360
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.29 E-value=0.0098 Score=45.47 Aligned_cols=115 Identities=8% Similarity=0.040 Sum_probs=60.6
Q ss_pred ccCceeEEEEeeC-CeEEEec------CCC--cEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccC-CcEEEE
Q 038439 52 HKKAVSYVKFLSN-DELASAS------TDS--TLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSES-NEVYVY 121 (179)
Q Consensus 52 ~~~~i~~~~~~~~-~~l~~~~------~d~--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d-~~v~vw 121 (179)
....+.+.+++|+ ..++... .|. .+.+++.. +.. ..+.... ....-.|+|+|..+++.... ..+++.
T Consensus 348 ~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g~-~~t~PsWspDG~~lw~v~dg~~~~~v~ 424 (591)
T PRK13616 348 QMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEGH-SLTRPSWSLDADAVWVVVDGNTVVRVI 424 (591)
T ss_pred cccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecCC-CCCCceECCCCCceEEEecCcceEEEe
Confidence 3346788899999 6555443 233 45555542 222 3332222 36778899998877666432 222222
Q ss_pred EcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEE
Q 038439 122 HKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKV 174 (179)
Q Consensus 122 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 174 (179)
+......+............ .....|..+.|+|||..++... +|.|.+
T Consensus 425 ~~~~~gql~~~~vd~ge~~~----~~~g~Issl~wSpDG~RiA~i~-~g~v~V 472 (591)
T PRK13616 425 RDPATGQLARTPVDASAVAS----RVPGPISELQLSRDGVRAAMII-GGKVYL 472 (591)
T ss_pred ccCCCceEEEEeccCchhhh----ccCCCcCeEEECCCCCEEEEEE-CCEEEE
Confidence 22111111111111110000 0044699999999999888766 466655
No 361
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.27 E-value=0.028 Score=38.53 Aligned_cols=140 Identities=14% Similarity=0.176 Sum_probs=81.5
Q ss_pred CceeEEeecCCCceeEEEEcCCCCeEEEEe-CCC------------cee---------eecccCceeEEEEeeC-CeEEE
Q 038439 13 QEASVLNIDMKANICCVKYNPGSSNYIAKY-QST------------APC---------VHGHKKAVSYVKFLSN-DELAS 69 (179)
Q Consensus 13 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~------------~~~---------~~~~~~~i~~~~~~~~-~~l~~ 69 (179)
.++++...........++|+|..+.-++.. +.+ +++ +.+|. .|+|+ .+|..
T Consensus 57 aGk~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHG------vfs~dG~~LYA 130 (366)
T COG3490 57 AGKIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHG------VFSPDGRLLYA 130 (366)
T ss_pred CCceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeeccc------ccCCCCcEEEe
Confidence 456666666666677788888766655555 111 111 22332 48899 44444
Q ss_pred ecC-----CCcEEEEecCCC-cceeeecCCCCCeEEEEEeeCCCEEEEecc------------------CCcEEEEEcCC
Q 038439 70 AST-----DSTLRLWDVKEN-LPVRTFRGHMNEKNFVGLTVNSEYIACGSE------------------SNEVYVYHKEI 125 (179)
Q Consensus 70 ~~~-----d~~v~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~------------------d~~v~vwd~~~ 125 (179)
.-. -|.|-|||.+.+ +.+..+..|.-....+.|.+||+.++.+.. .-.+.+.|..+
T Consensus 131 TEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~at 210 (366)
T COG3490 131 TENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAAT 210 (366)
T ss_pred ecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccc
Confidence 322 257889998853 345566667666778999999999887643 11233444445
Q ss_pred CccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEE
Q 038439 126 SKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTA 166 (179)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 166 (179)
++.+....+... . +...|..+...+||..++.+
T Consensus 211 G~liekh~Lp~~-------l-~~lSiRHld~g~dgtvwfgc 243 (366)
T COG3490 211 GNLIEKHTLPAS-------L-RQLSIRHLDIGRDGTVWFGC 243 (366)
T ss_pred cchhhhccCchh-------h-hhcceeeeeeCCCCcEEEEE
Confidence 544444333211 0 14467778888877755443
No 362
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.12 E-value=0.042 Score=37.80 Aligned_cols=151 Identities=13% Similarity=0.162 Sum_probs=85.1
Q ss_pred CCceeEEEEcCCCCeEEEEeCCCcee--eecc-----------cCceeEEEEeeC-CeEEEecCCCcEEEEecCCCccee
Q 038439 23 KANICCVKYNPGSSNYIAKYQSTAPC--VHGH-----------KKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVR 88 (179)
Q Consensus 23 ~~~v~~~~~~~~~~~~~~~~~~~~~~--~~~~-----------~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~ 88 (179)
...+.++.|+|+.+.++++.+....+ +... -.....|.|..+ .+.++--.+..+.++.+.....+.
T Consensus 85 ~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~ 164 (316)
T COG3204 85 TANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVI 164 (316)
T ss_pred cccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEE
Confidence 45599999999999999998333322 1111 112234666666 444444457777777665432111
Q ss_pred e-------e---cCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCcc-ccccccCCCCCCCCcccCCcceEEEEEEc
Q 038439 89 T-------F---RGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKP-VTWHRFSSPDMDDTDEDAGSYFISAVCWK 157 (179)
Q Consensus 89 ~-------~---~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 157 (179)
. + ...+.....++|.|..+.|+.+-+...+.||....+.. +.......+....... -..+.++.|+
T Consensus 165 ~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f---~~DvSgl~~~ 241 (316)
T COG3204 165 SAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLF---VLDVSGLEFN 241 (316)
T ss_pred eccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceE---eeccccceec
Confidence 1 1 11145677899999988888888888888888774432 1111111111000000 2346777888
Q ss_pred cC-CCeEEEEeCCCcEEEEe
Q 038439 158 SD-SPTMLTANSQGTIKVLV 176 (179)
Q Consensus 158 ~~-~~~l~~~~~dg~i~iwd 176 (179)
+. +..|+.+..++.+.-.|
T Consensus 242 ~~~~~LLVLS~ESr~l~Evd 261 (316)
T COG3204 242 AITNSLLVLSDESRRLLEVD 261 (316)
T ss_pred CCCCcEEEEecCCceEEEEe
Confidence 64 44555555565555444
No 363
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.12 E-value=0.0055 Score=46.45 Aligned_cols=73 Identities=11% Similarity=0.147 Sum_probs=55.5
Q ss_pred cCceeEEEEeeC-CeEEEecCCCcEEEEecCCCccee-----ee-cCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCC
Q 038439 53 KKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVR-----TF-RGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEI 125 (179)
Q Consensus 53 ~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~-----~~-~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~ 125 (179)
.+.+.....+++ .+++.|+..|.|.++-+..+.+-. .. +.|...|++++|++++..+++|...|+|..-.+.+
T Consensus 76 ~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 76 TGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred cceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 344555667777 777888889999999887643211 11 23577899999999999999999999998887776
No 364
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.06 E-value=0.044 Score=37.74 Aligned_cols=120 Identities=11% Similarity=0.216 Sum_probs=82.7
Q ss_pred cccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCcceeeecC-CCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCcc
Q 038439 51 GHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRG-HMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKP 128 (179)
Q Consensus 51 ~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~ 128 (179)
+-+..+.++.|+|+ +.|++......--++=-.+|+.++++.- .-+....+.+.-+|++.++--.++.+.++.+.....
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~ 162 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTT 162 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCcc
Confidence 34455999999999 8888888777777776677888877642 133445678888888888877889999888776533
Q ss_pred ccc-----cccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439 129 VTW-----HRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVL 177 (179)
Q Consensus 129 ~~~-----~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 177 (179)
... +.+... .+.......++|.|....|+.+-...=+.||..
T Consensus 163 ~~~~~~~~i~L~~~-------~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~ 209 (316)
T COG3204 163 VISAKVQKIPLGTT-------NKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEV 209 (316)
T ss_pred EEeccceEEecccc-------CCCCcCceeeecCCCCceEEEEEccCCcEEEEE
Confidence 221 122111 111345778999998888888877766777654
No 365
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.06 E-value=0.039 Score=39.56 Aligned_cols=18 Identities=22% Similarity=0.733 Sum_probs=13.3
Q ss_pred cceEEEEEEccCCCeEEE
Q 038439 148 SYFISAVCWKSDSPTMLT 165 (179)
Q Consensus 148 ~~~i~~~~~~~~~~~l~~ 165 (179)
...+..+.|.++++.|+.
T Consensus 183 ~~yl~~v~W~~d~~~l~~ 200 (353)
T PF00930_consen 183 DYYLTRVGWSPDGKRLWV 200 (353)
T ss_dssp SEEEEEEEEEETTEEEEE
T ss_pred ccCcccceecCCCcEEEE
Confidence 556888999999884433
No 366
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.05 E-value=0.037 Score=40.33 Aligned_cols=110 Identities=10% Similarity=0.090 Sum_probs=56.5
Q ss_pred ccEEEEEcCCceeEEeecCC---CceeEEEEcC--CCCeEEEEe-----------------CCCcee-eec---------
Q 038439 4 GKVKVWCTRQEASVLNIDMK---ANICCVKYNP--GSSNYIAKY-----------------QSTAPC-VHG--------- 51 (179)
Q Consensus 4 ~~i~vwd~~~~~~~~~~~~~---~~v~~~~~~~--~~~~~~~~~-----------------~~~~~~-~~~--------- 51 (179)
.++.+||+.+.+.++++... ..+..+.|.. +...-++.+ ...+.+ +..
T Consensus 222 ~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp 301 (461)
T PF05694_consen 222 HSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILP 301 (461)
T ss_dssp -EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---
T ss_pred CeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccccc
Confidence 58999999999999999854 3477888854 343333332 111111 111
Q ss_pred --------ccCceeEEEEeeC-CeEEEec-CCCcEEEEecCCC---cceeeecC----------------CCCCeEEEEE
Q 038439 52 --------HKKAVSYVKFLSN-DELASAS-TDSTLRLWDVKEN---LPVRTFRG----------------HMNEKNFVGL 102 (179)
Q Consensus 52 --------~~~~i~~~~~~~~-~~l~~~~-~d~~v~iwd~~~~---~~~~~~~~----------------~~~~v~~~~~ 102 (179)
-..-|+.|..|.| ++|..++ .+|.||.||+... +++.++.. -.+....+..
T Consensus 302 ~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvql 381 (461)
T PF05694_consen 302 EMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQL 381 (461)
T ss_dssp GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE
T ss_pred ccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEE
Confidence 1245789999999 6665544 5899999999863 22222221 0123466888
Q ss_pred eeCCCEEEEec
Q 038439 103 TVNSEYIACGS 113 (179)
Q Consensus 103 ~~~~~~~~~~~ 113 (179)
|.||+.+++.+
T Consensus 382 S~DGkRlYvTn 392 (461)
T PF05694_consen 382 SLDGKRLYVTN 392 (461)
T ss_dssp -TTSSEEEEE-
T ss_pred ccCCeEEEEEe
Confidence 99999887653
No 367
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.01 E-value=0.048 Score=40.31 Aligned_cols=117 Identities=8% Similarity=0.078 Sum_probs=62.4
Q ss_pred CccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEeCCCc--------------------ee--eecccCceeEEE
Q 038439 3 YGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKYQSTA--------------------PC--VHGHKKAVSYVK 60 (179)
Q Consensus 3 d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--------------------~~--~~~~~~~i~~~~ 60 (179)
++.|.+||+++++.+..++... |..+.|++++..+..++...- .+ +..-...|.+..
T Consensus 125 ~~~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~ 203 (443)
T PF04053_consen 125 SDFICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVTKDSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGC 203 (443)
T ss_dssp TTEEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEE
T ss_pred CCCEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEeCCeEEEEEecchhcccccccCchhceEEEEEecceeEEEE
Confidence 4579999999999999998775 999999999976666651111 12 222245677777
Q ss_pred EeeCCeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCC
Q 038439 61 FLSNDELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEI 125 (179)
Q Consensus 61 ~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~ 125 (179)
|..+ .++-.... .++- +..|+ ...+..-..++.-+.+.|+...++....|+.+..+.+..
T Consensus 204 W~~d-~fiYtT~~-~lkY--l~~Ge-~~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 204 WVED-CFIYTTSN-HLKY--LVNGE-TGIIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp EETT-EEEEE-TT-EEEE--EETTE-EEEEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred EEcC-EEEEEcCC-eEEE--EEcCC-cceEEEcCCceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence 7766 33333333 5554 33343 223332345677778888777778788888888887653
No 368
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.97 E-value=0.022 Score=37.98 Aligned_cols=99 Identities=9% Similarity=0.072 Sum_probs=65.8
Q ss_pred eEEEEeeC--CeEEEecCCCcEEEEe--cCCCc-----ceeeecC----CCCCeEEEEEeeCCCEEEEeccCCcEEEEEc
Q 038439 57 SYVKFLSN--DELASASTDSTLRLWD--VKENL-----PVRTFRG----HMNEKNFVGLTVNSEYIACGSESNEVYVYHK 123 (179)
Q Consensus 57 ~~~~~~~~--~~l~~~~~d~~v~iwd--~~~~~-----~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~ 123 (179)
+.++|..+ .+.++-+.+-.|.-|| +.++. .+..++. .....-.++...+|.+++++-..++|...|+
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp 240 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDP 240 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECC
Confidence 45788877 4556667777887777 55542 2222221 1112234555667888888888899999999
Q ss_pred CCCccccccccCCCCCCCCcccCCcceEEEEEEc-cCCCeEEEEe
Q 038439 124 EISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWK-SDSPTMLTAN 167 (179)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~ 167 (179)
.+++.+..+.+. ...+++++|- ++-..+++.+
T Consensus 241 ~tGK~L~eiklP------------t~qitsccFgGkn~d~~yvT~ 273 (310)
T KOG4499|consen 241 TTGKILLEIKLP------------TPQITSCCFGGKNLDILYVTT 273 (310)
T ss_pred CCCcEEEEEEcC------------CCceEEEEecCCCccEEEEEe
Confidence 999999888775 5579999996 3444555443
No 369
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.95 E-value=0.013 Score=44.73 Aligned_cols=78 Identities=19% Similarity=0.292 Sum_probs=56.0
Q ss_pred CccEEEEEcCCceeEEee--cCCCceeEEEEc--CCCCeEEEEe-------------------CCCcee----eeccc-C
Q 038439 3 YGKVKVWCTRQEASVLNI--DMKANICCVKYN--PGSSNYIAKY-------------------QSTAPC----VHGHK-K 54 (179)
Q Consensus 3 d~~i~vwd~~~~~~~~~~--~~~~~v~~~~~~--~~~~~~~~~~-------------------~~~~~~----~~~~~-~ 54 (179)
-.++.|||...+.....- ...+.|.++.|. |+++.++++| ..-.++ +..|+ .
T Consensus 50 ~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h 129 (631)
T PF12234_consen 50 RSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPH 129 (631)
T ss_pred CCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecCCCC
Confidence 457999999988755443 458899999994 7888999999 111122 55565 6
Q ss_pred ceeEEEEeeCCeEEEecCCCcEEEEec
Q 038439 55 AVSYVKFLSNDELASASTDSTLRLWDV 81 (179)
Q Consensus 55 ~i~~~~~~~~~~l~~~~~d~~v~iwd~ 81 (179)
+|.+..|.+++.++.|+. ..+.|+|-
T Consensus 130 ~Igds~Wl~~G~LvV~sG-Nqlfv~dk 155 (631)
T PF12234_consen 130 PIGDSIWLKDGTLVVGSG-NQLFVFDK 155 (631)
T ss_pred CccceeEecCCeEEEEeC-CEEEEECC
Confidence 899999999977777664 45677763
No 370
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.89 E-value=0.073 Score=36.65 Aligned_cols=129 Identities=13% Similarity=0.028 Sum_probs=78.9
Q ss_pred EEEEcCCCCeEEEEe-CCCcee-eecccCceeEEEEeeC--CeEEEecCCCc-EEEEecCCCcceeeecCCCCC--eEEE
Q 038439 28 CVKYNPGSSNYIAKY-QSTAPC-VHGHKKAVSYVKFLSN--DELASASTDST-LRLWDVKENLPVRTFRGHMNE--KNFV 100 (179)
Q Consensus 28 ~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~i~~~~~~~~--~~l~~~~~d~~-v~iwd~~~~~~~~~~~~~~~~--v~~~ 100 (179)
+....++|+..++.- ..++.+ -..-...-..|.++|. .-++.+-.-|+ ..++|....+....+...... .-.=
T Consensus 40 saf~~~dgs~g~a~~~eaGk~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHG 119 (366)
T COG3490 40 SAFDARDGSFGAATLSEAGKIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHG 119 (366)
T ss_pred eeeeccCCceeEEEEccCCceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeeccc
Confidence 344456775444444 556665 2222333446788888 55666666554 668999887766665433222 1224
Q ss_pred EEeeCCCEEEEecc-----CCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEe
Q 038439 101 GLTVNSEYIACGSE-----SNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTAN 167 (179)
Q Consensus 101 ~~~~~~~~~~~~~~-----d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 167 (179)
.|+|||++|+..-. .|.|=|||.+.+- ...-++..+ .-....+.|.+||+.++.+.
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~f-qrvgE~~t~----------GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGF-QRVGEFSTH----------GIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEeccccc-ceecccccC----------CcCcceeEEecCCcEEEEeC
Confidence 58999999887543 3779999988431 122222222 44567889999999988764
No 371
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=96.88 E-value=0.006 Score=28.99 Aligned_cols=31 Identities=6% Similarity=0.125 Sum_probs=26.1
Q ss_pred CCeEEEEEeeCC---CEEEEeccCCcEEEEEcCC
Q 038439 95 NEKNFVGLTVNS---EYIACGSESNEVYVYHKEI 125 (179)
Q Consensus 95 ~~v~~~~~~~~~---~~~~~~~~d~~v~vwd~~~ 125 (179)
+.++++.|+|.+ .+|+..-..+.|.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 368899999853 5888888889999999995
No 372
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=96.85 E-value=0.006 Score=28.99 Aligned_cols=29 Identities=10% Similarity=0.204 Sum_probs=24.7
Q ss_pred eEEEEEEccCC---CeEEEEeCCCcEEEEeec
Q 038439 150 FISAVCWKSDS---PTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 150 ~i~~~~~~~~~---~~l~~~~~dg~i~iwd~~ 178 (179)
.+.++.|+|+. .+|+.+-.-|.+.|+|++
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R 33 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTR 33 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEcc
Confidence 58899999844 588888889999999987
No 373
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.83 E-value=0.0077 Score=39.66 Aligned_cols=103 Identities=7% Similarity=0.013 Sum_probs=62.7
Q ss_pred CeEEEecCCCcEEEEecCCCccee-eecCCCCCeEE-EEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCC
Q 038439 65 DELASASTDSTLRLWDVKENLPVR-TFRGHMNEKNF-VGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDT 142 (179)
Q Consensus 65 ~~l~~~~~d~~v~iwd~~~~~~~~-~~~~~~~~v~~-~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~ 142 (179)
..++.|+.++.|.+|.....-... .+......+-+ +.--.++.+..+++.+|.|+.|+...++.+-....
T Consensus 71 ~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~-------- 142 (238)
T KOG2444|consen 71 AKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQ-------- 142 (238)
T ss_pred ceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeecc--------
Confidence 678999999999999876321111 11111222222 22223456788999999999999987766543221
Q ss_pred cccCCcceEEEEEEccCCCeEEEE--eCCCcEEEEeec
Q 038439 143 DEDAGSYFISAVCWKSDSPTMLTA--NSQGTIKVLVLA 178 (179)
Q Consensus 143 ~~~~~~~~i~~~~~~~~~~~l~~~--~~dg~i~iwd~~ 178 (179)
|...+...+..+..++.++.. +.|..++.|++.
T Consensus 143 ---h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 143 ---HNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred ---ccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence 101334444455566667766 778888888764
No 374
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.78 E-value=0.059 Score=41.41 Aligned_cols=95 Identities=17% Similarity=0.190 Sum_probs=61.3
Q ss_pred cCCCcEEEEecCCCcceeeec-CCCCCeEEEEEe--eCCCEEEEeccCCcEEEEEcCCC---------ccccccccCCCC
Q 038439 71 STDSTLRLWDVKENLPVRTFR-GHMNEKNFVGLT--VNSEYIACGSESNEVYVYHKEIS---------KPVTWHRFSSPD 138 (179)
Q Consensus 71 ~~d~~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~--~~~~~~~~~~~d~~v~vwd~~~~---------~~~~~~~~~~~~ 138 (179)
+....+.|||.+.+.....-. .....|..++|. |+++.+++.+..+.|.++-.... .++..+.....
T Consensus 48 ~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~- 126 (631)
T PF12234_consen 48 SSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSH- 126 (631)
T ss_pred CCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecC-
Confidence 344579999999876433221 346789999985 57888888888899998864321 11222222211
Q ss_pred CCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEe
Q 038439 139 MDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLV 176 (179)
Q Consensus 139 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd 176 (179)
...+|.+..|.++|..++.+ ++.+.|+|
T Consensus 127 --------T~h~Igds~Wl~~G~LvV~s--GNqlfv~d 154 (631)
T PF12234_consen 127 --------TPHPIGDSIWLKDGTLVVGS--GNQLFVFD 154 (631)
T ss_pred --------CCCCccceeEecCCeEEEEe--CCEEEEEC
Confidence 14578899999999766544 34577665
No 375
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.76 E-value=0.0054 Score=43.88 Aligned_cols=99 Identities=12% Similarity=0.098 Sum_probs=57.2
Q ss_pred CCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCC-----
Q 038439 73 DSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAG----- 147 (179)
Q Consensus 73 d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~----- 147 (179)
.+.+.++|+.+++.. .+......+....|+|+|+.++... ++.|.++++.+++..+.- ..+.. ....+..
T Consensus 22 ~~~y~i~d~~~~~~~-~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT-~dg~~--~i~nG~~dwvye 96 (353)
T PF00930_consen 22 KGDYYIYDIETGEIT-PLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLT-TDGEP--GIYNGVPDWVYE 96 (353)
T ss_dssp EEEEEEEETTTTEEE-ESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESE-S--TT--TEEESB--HHHH
T ss_pred ceeEEEEecCCCceE-ECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEec-cccce--eEEcCccceecc
Confidence 356889999986543 3333356678899999999988765 578999998877544322 22110 0000000
Q ss_pred ---cceEEEEEEccCCCeEEEEeCC-CcEEEEe
Q 038439 148 ---SYFISAVCWKSDSPTMLTANSQ-GTIKVLV 176 (179)
Q Consensus 148 ---~~~i~~~~~~~~~~~l~~~~~d-g~i~iwd 176 (179)
-..-..+-||||+++|+....| ..+..+.
T Consensus 97 EEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~ 129 (353)
T PF00930_consen 97 EEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYP 129 (353)
T ss_dssp HHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEE
T ss_pred ccccccccceEECCCCCEEEEEEECCcCCceEE
Confidence 0112458899999999876553 3444443
No 376
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.73 E-value=0.14 Score=37.62 Aligned_cols=41 Identities=15% Similarity=0.170 Sum_probs=32.3
Q ss_pred CCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCcccccccc
Q 038439 94 MNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRF 134 (179)
Q Consensus 94 ~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~ 134 (179)
.+++..++.||+|+++|.-..+|.+.+....-.+....+..
T Consensus 216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~ 256 (410)
T PF04841_consen 216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDT 256 (410)
T ss_pred CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeec
Confidence 35789999999999999989999998887665555544443
No 377
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.68 E-value=0.051 Score=39.83 Aligned_cols=113 Identities=16% Similarity=0.175 Sum_probs=63.2
Q ss_pred eeEEEEeeC-CeEEEe-cCCC----cEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccC-----------CcE
Q 038439 56 VSYVKFLSN-DELASA-STDS----TLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSES-----------NEV 118 (179)
Q Consensus 56 i~~~~~~~~-~~l~~~-~~d~----~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d-----------~~v 118 (179)
+..+.++|+ ++++.+ +..| .++++|+.+++.+...-... ....+.|.++++.|+....+ ..|
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 345778888 666543 3333 59999999997664321111 12349999998876554322 236
Q ss_pred EEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCC----CcEEEEee
Q 038439 119 YVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQ----GTIKVLVL 177 (179)
Q Consensus 119 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~iwd~ 177 (179)
+.|.+.+.......-+.... . ......+..++++++|+..... ..+.+.++
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~-------~-~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~ 259 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPD-------E-PFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDL 259 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TT-------C-TTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEEC
T ss_pred EEEECCCChHhCeeEEeecC-------C-CcEEEEEEecCcccEEEEEEEccccCCeEEEEec
Confidence 77777765433112222111 0 2226678889999988764442 23555554
No 378
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.66 E-value=0.038 Score=43.28 Aligned_cols=60 Identities=18% Similarity=0.277 Sum_probs=44.1
Q ss_pred ceeEEEEcCCCCeEEEEe-----------C---C-----C-cee------------eecccCceeEEEEeeC----CeEE
Q 038439 25 NICCVKYNPGSSNYIAKY-----------Q---S-----T-APC------------VHGHKKAVSYVKFLSN----DELA 68 (179)
Q Consensus 25 ~v~~~~~~~~~~~~~~~~-----------~---~-----~-~~~------------~~~~~~~i~~~~~~~~----~~l~ 68 (179)
.|..+.+||+|..++.+| + . + ..+ ...+...|..+.|+|. ..|+
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~ 165 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLV 165 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEE
Confidence 488999999998777777 1 0 1 111 1133457889999997 6788
Q ss_pred EecCCCcEEEEecCCC
Q 038439 69 SASTDSTLRLWDVKEN 84 (179)
Q Consensus 69 ~~~~d~~v~iwd~~~~ 84 (179)
.-..|+++|+||+...
T Consensus 166 vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 166 VLTSDNTLRLYDISDP 181 (717)
T ss_pred EEecCCEEEEEecCCC
Confidence 8899999999999763
No 379
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=96.57 E-value=0.097 Score=39.04 Aligned_cols=59 Identities=19% Similarity=0.230 Sum_probs=47.1
Q ss_pred CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcC
Q 038439 65 DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKE 124 (179)
Q Consensus 65 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~ 124 (179)
++++.+|..|-|++||.-..+....+.+-...|..+..+.+|.++++.+. .++.+-|++
T Consensus 574 GyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 574 GYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred ceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence 89999999999999997655555556666778899999999999876664 567777765
No 380
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.54 E-value=0.064 Score=31.38 Aligned_cols=65 Identities=15% Similarity=0.182 Sum_probs=43.5
Q ss_pred cCceeEEEEeeCCeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEee-C--C-CEEEEeccCCcEEE
Q 038439 53 KKAVSYVKFLSNDELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTV-N--S-EYIACGSESNEVYV 120 (179)
Q Consensus 53 ~~~i~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~--~-~~~~~~~~d~~v~v 120 (179)
...|+++.-...+.|+.+..+|+|-+|+-.. .+..++.... +.++.+.. + | ..|++|-.+|.|-+
T Consensus 42 ~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~--RlWRiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 42 TDKVTSLCSLGGGRFAYALANGTVGVYDRSQ--RLWRIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred ccceEEEEEcCCCEEEEEecCCEEEEEeCcc--eeeeeccCCC-eEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 3567777766668899999999999998643 3445554333 55555433 3 3 25888888887753
No 381
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.51 E-value=0.039 Score=44.63 Aligned_cols=100 Identities=16% Similarity=0.147 Sum_probs=67.1
Q ss_pred eeEEEEeeC--CeEEEecCCCcEEEEecCCCc-ceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCcccccc
Q 038439 56 VSYVKFLSN--DELASASTDSTLRLWDVKENL-PVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWH 132 (179)
Q Consensus 56 i~~~~~~~~--~~l~~~~~d~~v~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~ 132 (179)
..++.|.|. ...+.+..|+.|++..+.... .+..+. -....++++|+|.|..++.|-..|++.-|-..-. ....+
T Consensus 158 ~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le-ik~~i 235 (1405)
T KOG3630|consen 158 QLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE-IKSEI 235 (1405)
T ss_pred cccccccCCccchhhhhccccchhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecccc-eeecc
Confidence 457889988 567777889999988765422 223332 3556789999999999999999999887765432 21111
Q ss_pred ccCCCCCCCCcccCCcceEEEEEEccCCCeEEE
Q 038439 133 RFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLT 165 (179)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 165 (179)
.. +... . ...|.+++|-....++++
T Consensus 236 p~--Pp~~-----e-~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 236 PE--PPVE-----E-NYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred cC--CCcC-----C-CcceeEEEEecceeEEEE
Confidence 11 1100 0 457999999877776654
No 382
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.50 E-value=0.24 Score=37.38 Aligned_cols=105 Identities=7% Similarity=-0.013 Sum_probs=61.2
Q ss_pred eEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEe------------------ccCCcEEEEEcCCCc
Q 038439 66 ELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACG------------------SESNEVYVYHKEISK 127 (179)
Q Consensus 66 ~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~------------------~~d~~v~vwd~~~~~ 127 (179)
.++.++.+|.+...|.++++.+-...... ..++.+| ..++.+ ..+|.+...|+.+++
T Consensus 303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~~---~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~ 377 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTGKLISARPEVE---QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGK 377 (488)
T ss_pred EEEEECCCceEEEEECCCCcEeeEeEeec---cccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCc
Confidence 47778889999999999998876654211 1123333 222222 246788999999998
Q ss_pred cccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439 128 PVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA 179 (179)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 179 (179)
.+-............. ......-.....+..|++++.||.++.+|.++
T Consensus 378 ~~W~~~~~~~~~~~~~----g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~t 425 (488)
T cd00216 378 VVWEKREGTIRDSWNI----GFPHWGGSLATAGNLVFAGAADGYFRAFDATT 425 (488)
T ss_pred EeeEeeCCcccccccc----CCcccCcceEecCCeEEEECCCCeEEEEECCC
Confidence 7766554311000000 00110000112567788888999999988653
No 383
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=96.50 E-value=0.053 Score=36.14 Aligned_cols=73 Identities=19% Similarity=0.213 Sum_probs=48.0
Q ss_pred EeeCCCEEEEeccCCcEEEEEcCCCcccccc-c---cCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439 102 LTVNSEYIACGSESNEVYVYHKEISKPVTWH-R---FSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVL 177 (179)
Q Consensus 102 ~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 177 (179)
+..++.++++-+.+|.+++||+.+++.+..- . +-.... .... .....|..+..+.+|.-+++-+ +|..+.|+.
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~-~~~~-~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~ 94 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSP-VSDK-SSSPNITSCSLTSNGVPIVTLS-NGDSYSYSP 94 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccc-cccC-CCCCcEEEEEEcCCCCEEEEEe-CCCEEEecc
Confidence 4557889999999999999999987754332 1 100000 0000 1156788888998888766654 577888874
No 384
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.40 E-value=0.084 Score=37.10 Aligned_cols=100 Identities=9% Similarity=0.099 Sum_probs=63.6
Q ss_pred eeEEEEeeC-CeEEEe-cCCCcEEEEecCC--C----c-ceeeecCCCCCeEEEEEeeCCCEEEEeccCC-cEEEEEcCC
Q 038439 56 VSYVKFLSN-DELASA-STDSTLRLWDVKE--N----L-PVRTFRGHMNEKNFVGLTVNSEYIACGSESN-EVYVYHKEI 125 (179)
Q Consensus 56 i~~~~~~~~-~~l~~~-~~d~~v~iwd~~~--~----~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~-~v~vwd~~~ 125 (179)
-+.|+|+|+ ..+..+ +..+.|.-|++.. + + ....+....+..-.++...+|.+.+++..+| .|.+|+..
T Consensus 165 ~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd- 243 (307)
T COG3386 165 PNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD- 243 (307)
T ss_pred cCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-
Confidence 367999999 555544 4457788887752 1 1 1112222344555677888888876555554 89999998
Q ss_pred CccccccccCCCCCCCCcccCCcceEEEEEEc-cCCCeEEEEeC
Q 038439 126 SKPVTWHRFSSPDMDDTDEDAGSYFISAVCWK-SDSPTMLTANS 168 (179)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~ 168 (179)
++++..+.+. ...+++++|- |+.+.|+..+.
T Consensus 244 G~l~~~i~lP------------~~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 244 GKLLGEIKLP------------VKRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred CcEEEEEECC------------CCCCccceEeCCCcCEEEEEec
Confidence 8888777763 2457777774 45566655444
No 385
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=96.38 E-value=0.24 Score=36.21 Aligned_cols=76 Identities=13% Similarity=0.162 Sum_probs=51.8
Q ss_pred eecccCceeEEEEeeCCeEEEecCCCcEEEEecCCCcceee--ecC------CCCCeEEEEEee-----CC---CEEEEe
Q 038439 49 VHGHKKAVSYVKFLSNDELASASTDSTLRLWDVKENLPVRT--FRG------HMNEKNFVGLTV-----NS---EYIACG 112 (179)
Q Consensus 49 ~~~~~~~i~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~--~~~------~~~~v~~~~~~~-----~~---~~~~~~ 112 (179)
+....++|++++.+.-++++.|..+|.+.|.|+|....+.. +.. ....++++.|.. |+ -.+++|
T Consensus 82 ~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 82 LDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp E---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 55668899999986339999999999999999987665543 222 234577787763 22 357888
Q ss_pred ccCCcEEEEEcC
Q 038439 113 SESNEVYVYHKE 124 (179)
Q Consensus 113 ~~d~~v~vwd~~ 124 (179)
...|.+.+|.+.
T Consensus 162 Tn~G~v~~fkIl 173 (395)
T PF08596_consen 162 TNSGNVLTFKIL 173 (395)
T ss_dssp ETTSEEEEEEEE
T ss_pred eCCCCEEEEEEe
Confidence 889999999765
No 386
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.36 E-value=0.049 Score=40.53 Aligned_cols=102 Identities=14% Similarity=0.176 Sum_probs=63.3
Q ss_pred EEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCE-------EEEeccCCcEEEEEcCCCccccccccCCCCC
Q 038439 67 LASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEY-------IACGSESNEVYVYHKEISKPVTWHRFSSPDM 139 (179)
Q Consensus 67 l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-------~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~ 139 (179)
|.++.....++-.|++.|+.+...+-+.. |.-+.+.|+.+. -+.|-.+..|.-||+|-...-.......++.
T Consensus 349 l~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy 427 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQY 427 (644)
T ss_pred eeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccc
Confidence 34455556788889999999988876555 677778776332 2456678889999998432210001111110
Q ss_pred CCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEe
Q 038439 140 DDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLV 176 (179)
Q Consensus 140 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd 176 (179)
. ......|.+-..+ .++++|+.+|.|++||
T Consensus 428 ~------~k~nFsc~aTT~s-G~IvvgS~~GdIRLYd 457 (644)
T KOG2395|consen 428 S------TKNNFSCFATTES-GYIVVGSLKGDIRLYD 457 (644)
T ss_pred c------cccccceeeecCC-ceEEEeecCCcEEeeh
Confidence 0 0233444444444 4699999999999998
No 387
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.28 E-value=0.23 Score=34.97 Aligned_cols=70 Identities=11% Similarity=0.080 Sum_probs=43.0
Q ss_pred ceeEEEEeeC-CeEEEecC-----C----CcEEEEecC-CCcceeeecCCCCCeEEEEEeeCCCEEEEecc-CCcEEEEE
Q 038439 55 AVSYVKFLSN-DELASAST-----D----STLRLWDVK-ENLPVRTFRGHMNEKNFVGLTVNSEYIACGSE-SNEVYVYH 122 (179)
Q Consensus 55 ~i~~~~~~~~-~~l~~~~~-----d----~~v~iwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-d~~v~vwd 122 (179)
..+.....|+ .+.++... . ..-.+|-+. .+..++.+..+-...+.++|+||++.++.... .+.|.-|+
T Consensus 112 r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~ 191 (307)
T COG3386 112 RPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYD 191 (307)
T ss_pred CCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEe
Confidence 4456777788 44444333 0 112344444 45555555555556678999999987776654 57788887
Q ss_pred cC
Q 038439 123 KE 124 (179)
Q Consensus 123 ~~ 124 (179)
+.
T Consensus 192 ~d 193 (307)
T COG3386 192 LD 193 (307)
T ss_pred cC
Confidence 76
No 388
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.28 E-value=0.29 Score=35.98 Aligned_cols=121 Identities=11% Similarity=0.112 Sum_probs=58.9
Q ss_pred eEEEEeeC-CeEEEecC--------------------CCcEEEEecCCCcceeeecCCCC--CeEEEEEeeC--CCE-EE
Q 038439 57 SYVKFLSN-DELASAST--------------------DSTLRLWDVKENLPVRTFRGHMN--EKNFVGLTVN--SEY-IA 110 (179)
Q Consensus 57 ~~~~~~~~-~~l~~~~~--------------------d~~v~iwd~~~~~~~~~~~~~~~--~v~~~~~~~~--~~~-~~ 110 (179)
..+-|.|. +.++|+.. ..++.+||+.+.+.++++.-... ..-.+.|..+ ..+ ++
T Consensus 184 YDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFv 263 (461)
T PF05694_consen 184 YDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFV 263 (461)
T ss_dssp --EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEE
T ss_pred CCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEE
Confidence 45667777 77777542 35799999999999998875432 3445666554 444 33
Q ss_pred EeccCCcEEEEEc-CCCcc--ccccccCCCCCCCC--------cccCCcceEEEEEEccCCCeEEEEeC-CCcEEEEeec
Q 038439 111 CGSESNEVYVYHK-EISKP--VTWHRFSSPDMDDT--------DEDAGSYFISAVCWKSDSPTMLTANS-QGTIKVLVLA 178 (179)
Q Consensus 111 ~~~~d~~v~vwd~-~~~~~--~~~~~~~~~~~~~~--------~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~ 178 (179)
.+-....|..|-. +.++- ...........+.. +... ..-|+.+..|.|.++|+.++. .|.|+.||+.
T Consensus 264 g~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~-P~LitDI~iSlDDrfLYvs~W~~GdvrqYDIS 342 (461)
T PF05694_consen 264 GCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAV-PPLITDILISLDDRFLYVSNWLHGDVRQYDIS 342 (461)
T ss_dssp EEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE-------EEE-TTS-EEEEEETTTTEEEEEE-S
T ss_pred EEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccC-CCceEeEEEccCCCEEEEEcccCCcEEEEecC
Confidence 3334555555544 32221 11111111100000 0000 245789999999999988776 8999999985
No 389
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.26 E-value=0.11 Score=38.93 Aligned_cols=82 Identities=16% Similarity=0.115 Sum_probs=50.4
Q ss_pred CeEEEEEeeCCCEEEEeccCCcEEEEEcC---------CCccccccccCCCCCCCCcccCCcceEEEEEEccCC---CeE
Q 038439 96 EKNFVGLTVNSEYIACGSESNEVYVYHKE---------ISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDS---PTM 163 (179)
Q Consensus 96 ~v~~~~~~~~~~~~~~~~~d~~v~vwd~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l 163 (179)
.|..+..++.|..++-.+.+|.+.++=.+ .+++....+...-.... +.....-.+..++|+|+. ..|
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~-ftss~~ltl~Qa~WHP~S~~D~hL 183 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERF-FTSSTSLTLKQAAWHPSSILDPHL 183 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeeccccee-eccCCceeeeeccccCCccCCceE
Confidence 45667788899999888889976655322 23322222111111110 111113356788999965 678
Q ss_pred EEEeCCCcEEEEeec
Q 038439 164 LTANSQGTIKVLVLA 178 (179)
Q Consensus 164 ~~~~~dg~i~iwd~~ 178 (179)
..-+.|+.|++||+.
T Consensus 184 ~iL~sdnviRiy~lS 198 (741)
T KOG4460|consen 184 VLLTSDNVIRIYSLS 198 (741)
T ss_pred EEEecCcEEEEEecC
Confidence 888899999999975
No 390
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.22 E-value=0.039 Score=44.30 Aligned_cols=69 Identities=16% Similarity=0.249 Sum_probs=53.6
Q ss_pred cCceeEEEEeeC-CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEE---EEEeeCCCEEEEeccCCcEEEEEc
Q 038439 53 KKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNF---VGLTVNSEYIACGSESNEVYVYHK 123 (179)
Q Consensus 53 ~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~---~~~~~~~~~~~~~~~d~~v~vwd~ 123 (179)
..+|++++|+.+ ..++.|-.+|.|.+||...++.++.+..+..+... +.+..++..++++...|. +|.+
T Consensus 130 ~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 130 QGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred CCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 568999999999 78888888999999999998888888776655444 445556667888777775 5554
No 391
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.19 E-value=0.51 Score=38.07 Aligned_cols=159 Identities=14% Similarity=0.101 Sum_probs=94.1
Q ss_pred cEEEEEcCCceeEEeecC--C---CceeEEEEcCCCCeEEEEe-----------CCCcee-ee--c-------ccCceeE
Q 038439 5 KVKVWCTRQEASVLNIDM--K---ANICCVKYNPGSSNYIAKY-----------QSTAPC-VH--G-------HKKAVSY 58 (179)
Q Consensus 5 ~i~vwd~~~~~~~~~~~~--~---~~v~~~~~~~~~~~~~~~~-----------~~~~~~-~~--~-------~~~~i~~ 58 (179)
.++++|-++.+.+...+. . ..|.++.|..|...++++| ..++.+ +. . |+..+..
T Consensus 751 ~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~G 830 (1096)
T KOG1897|consen 751 FLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKG 830 (1096)
T ss_pred EEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeecc
Confidence 577888777776655442 2 2366677998866787777 223333 21 1 1112222
Q ss_pred EEEeeC--CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCc--ccccccc
Q 038439 59 VKFLSN--DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISK--PVTWHRF 134 (179)
Q Consensus 59 ~~~~~~--~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~--~~~~~~~ 134 (179)
..+.-. +-.+.++-...|++|+..+.+.++.-..+...+..+...-.|..+++|..-+.+.+-..+..+ .....+.
T Consensus 831 av~aL~~fngkllA~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD 910 (1096)
T KOG1897|consen 831 AVYALVEFNGKLLAGINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARD 910 (1096)
T ss_pred ceeehhhhCCeEEEecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehh
Confidence 222211 223344556789999999886666655667778888888899999999888877766555433 3222211
Q ss_pred CCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEE
Q 038439 135 SSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVL 175 (179)
Q Consensus 135 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw 175 (179)
.+....+++.+-. +..++.+..+|.+.+-
T Consensus 911 -----------~~p~Wmtaveil~-~d~ylgae~~gNlf~v 939 (1096)
T KOG1897|consen 911 -----------YNPNWMTAVEILD-DDTYLGAENSGNLFTV 939 (1096)
T ss_pred -----------hCccceeeEEEec-CceEEeecccccEEEE
Confidence 1145566666643 3445555556666554
No 392
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.02 E-value=0.28 Score=33.54 Aligned_cols=107 Identities=11% Similarity=0.074 Sum_probs=66.8
Q ss_pred eeEEEEeeC-CeEEEecCCC--cEEEEecCCCcceeeecCCC-CCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccc
Q 038439 56 VSYVKFLSN-DELASASTDS--TLRLWDVKENLPVRTFRGHM-NEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTW 131 (179)
Q Consensus 56 i~~~~~~~~-~~l~~~~~d~--~v~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~ 131 (179)
...+.|..+ .++-+.+.-| .|+.+|+.+++......-.. -.-..+... +++.+.-.=.++...+||..+.+.+..
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~~~ 125 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKIGT 125 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEE
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccceEEEE
Confidence 456777666 5555666555 79999999998766554322 122233333 333444456688999999999888877
Q ss_pred cccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439 132 HRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
+... ..=+.++ .++..|+.+.....++.+|.+
T Consensus 126 ~~y~-------------~EGWGLt--~dg~~Li~SDGS~~L~~~dP~ 157 (264)
T PF05096_consen 126 FPYP-------------GEGWGLT--SDGKRLIMSDGSSRLYFLDPE 157 (264)
T ss_dssp EE-S-------------SS--EEE--ECSSCEEEE-SSSEEEEE-TT
T ss_pred EecC-------------CcceEEE--cCCCEEEEECCccceEEECCc
Confidence 7663 2335565 467778888778889888864
No 393
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.98 E-value=0.42 Score=35.21 Aligned_cols=29 Identities=10% Similarity=0.063 Sum_probs=25.6
Q ss_pred cceEEEEEEccCCCeEEEEeCCCcEEEEe
Q 038439 148 SYFISAVCWKSDSPTMLTANSQGTIKVLV 176 (179)
Q Consensus 148 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd 176 (179)
.+++..++.||+++++|.-..+|.+.+..
T Consensus 216 ~~~i~~iavSpng~~iAl~t~~g~l~v~s 244 (410)
T PF04841_consen 216 DGPIIKIAVSPNGKFIALFTDSGNLWVVS 244 (410)
T ss_pred CCCeEEEEECCCCCEEEEEECCCCEEEEE
Confidence 35799999999999999999999988765
No 394
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.96 E-value=0.29 Score=40.47 Aligned_cols=122 Identities=11% Similarity=0.169 Sum_probs=73.1
Q ss_pred CCccEEEEEcCCceeEEeec-CCCceeEEEE--------cCCCCeEEEEe--------------CC-Ccee------eec
Q 038439 2 AYGKVKVWCTRQEASVLNID-MKANICCVKY--------NPGSSNYIAKY--------------QS-TAPC------VHG 51 (179)
Q Consensus 2 ~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~~--------~~~~~~~~~~~--------------~~-~~~~------~~~ 51 (179)
-|+.+.+|+++++.....++ ....|..+.. .|.=+++++.+ .+ +..+ +..
T Consensus 97 iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~ 176 (1311)
T KOG1900|consen 97 IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISV 176 (1311)
T ss_pred eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeec
Confidence 58999999999866555554 2333443332 22223444444 11 1111 222
Q ss_pred ccCceeEEEEeeCCeEEEecCCCcEEEEec----CCC---c-----------------ceeeec-CCCCCeEEEEEeeCC
Q 038439 52 HKKAVSYVKFLSNDELASASTDSTLRLWDV----KEN---L-----------------PVRTFR-GHMNEKNFVGLTVNS 106 (179)
Q Consensus 52 ~~~~i~~~~~~~~~~l~~~~~d~~v~iwd~----~~~---~-----------------~~~~~~-~~~~~v~~~~~~~~~ 106 (179)
..-.|+|+....++.++.++.|| .+|.+ ..+ + .+..+. .+..+|..+......
T Consensus 177 dg~~V~~I~~t~nGRIF~~G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR 254 (1311)
T KOG1900|consen 177 DGVSVNCITYTENGRIFFAGRDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR 254 (1311)
T ss_pred CCceEEEEEeccCCcEEEeecCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc
Confidence 24567888865556777777777 44443 221 0 011222 345688888887777
Q ss_pred CEEEEeccCCcEEEEEcCC
Q 038439 107 EYIACGSESNEVYVYHKEI 125 (179)
Q Consensus 107 ~~~~~~~~d~~v~vwd~~~ 125 (179)
..+++-++.+.|.+||+..
T Consensus 255 ~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 255 NILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ceeeeeccCceEEEEEccC
Confidence 7889999999999999986
No 395
>PHA02713 hypothetical protein; Provisional
Probab=95.93 E-value=0.55 Score=36.12 Aligned_cols=63 Identities=6% Similarity=0.009 Sum_probs=34.8
Q ss_pred eCCCEEEEeccC------CcEEEEEcCC-CccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCC--cEEE
Q 038439 104 VNSEYIACGSES------NEVYVYHKEI-SKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQG--TIKV 174 (179)
Q Consensus 104 ~~~~~~~~~~~d------~~v~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i~i 174 (179)
-+++.++.|+.+ ..+..||+++ .+-........+ ......+.+ ++...++|+.+| .+..
T Consensus 462 ~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~----------r~~~~~~~~--~~~iyv~Gg~~~~~~~e~ 529 (557)
T PHA02713 462 HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESR----------LSALHTILH--DNTIMMLHCYESYMLQDT 529 (557)
T ss_pred ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcc----------cccceeEEE--CCEEEEEeeecceeehhh
Confidence 357777777654 2467889887 443222111111 111222222 678888888887 6777
Q ss_pred Eeec
Q 038439 175 LVLA 178 (179)
Q Consensus 175 wd~~ 178 (179)
||..
T Consensus 530 yd~~ 533 (557)
T PHA02713 530 FNVY 533 (557)
T ss_pred cCcc
Confidence 7754
No 396
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.85 E-value=0.39 Score=33.77 Aligned_cols=112 Identities=10% Similarity=0.091 Sum_probs=55.8
Q ss_pred eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEE-cCCC
Q 038439 49 VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYH-KEIS 126 (179)
Q Consensus 49 ~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd-~~~~ 126 (179)
...-.+.+..+.-+++ .++++++.-....-||.-...-...-+.....+..|.|.|++...+.+ ..|.|+.=+ ....
T Consensus 140 ~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~ 218 (302)
T PF14870_consen 140 VSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDG 218 (302)
T ss_dssp E-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEE
T ss_pred ccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCc
Confidence 3344567788888888 666666665566678754322222222346789999999998876654 778888777 2222
Q ss_pred ccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCC
Q 038439 127 KPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQ 169 (179)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 169 (179)
+....-.... ......+..++|.+++...++|+..
T Consensus 219 ~~w~~~~~~~--------~~~~~~~ld~a~~~~~~~wa~gg~G 253 (302)
T PF14870_consen 219 ETWSEPIIPI--------KTNGYGILDLAYRPPNEIWAVGGSG 253 (302)
T ss_dssp EEE---B-TT--------SS--S-EEEEEESSSS-EEEEESTT
T ss_pred cccccccCCc--------ccCceeeEEEEecCCCCEEEEeCCc
Confidence 2211100000 0004458999999887766655543
No 397
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.73 E-value=0.036 Score=44.86 Aligned_cols=109 Identities=12% Similarity=0.037 Sum_probs=69.6
Q ss_pred ceeEEEEeeC---CeEEEecCCCcEEEEecCCCcc-----eeeecC------CCCCeEEEEEeeCC-CEEEEeccCCcEE
Q 038439 55 AVSYVKFLSN---DELASASTDSTLRLWDVKENLP-----VRTFRG------HMNEKNFVGLTVNS-EYIACGSESNEVY 119 (179)
Q Consensus 55 ~i~~~~~~~~---~~l~~~~~d~~v~iwd~~~~~~-----~~~~~~------~~~~v~~~~~~~~~-~~~~~~~~d~~v~ 119 (179)
+|..+...+| ..++..+.+..|..||+++... ...+.. ......++.|+|.- ...++...|+.|.
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 4445555566 2344445566889999976321 111111 12334567888863 3466777888888
Q ss_pred EEEcCCCcc-ccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEe
Q 038439 120 VYHKEISKP-VTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLV 176 (179)
Q Consensus 120 vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd 176 (179)
+..+..... +..+.+ ....++++|+|.|+.++.|-..|++.-|.
T Consensus 182 V~~~~~~~~~v~s~p~-------------t~~~Tav~WSprGKQl~iG~nnGt~vQy~ 226 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPV-------------TNSQTAVLWSPRGKQLFIGRNNGTEVQYE 226 (1405)
T ss_pred hhhhhhhhhhhcccCc-------------ccceeeEEeccccceeeEecCCCeEEEee
Confidence 877654322 222232 56789999999999999999999988774
No 398
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=95.73 E-value=0.22 Score=36.58 Aligned_cols=86 Identities=12% Similarity=0.159 Sum_probs=58.2
Q ss_pred eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCcceeeecCCCCC-eEEEEEeeC-----------------CCE-
Q 038439 49 VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRGHMNE-KNFVGLTVN-----------------SEY- 108 (179)
Q Consensus 49 ~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~-----------------~~~- 108 (179)
+.+....+.++..+|+ .+.++...-|.|.++|+..+..++.+++.... +.-+..... ..+
T Consensus 303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~L 382 (415)
T PF14655_consen 303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFL 382 (415)
T ss_pred eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEE
Confidence 4555667889999999 77777777789999999998888877765432 111111111 112
Q ss_pred EEEeccCCcEEEEEcCCCcccccccc
Q 038439 109 IACGSESNEVYVYHKEISKPVTWHRF 134 (179)
Q Consensus 109 ~~~~~~d~~v~vwd~~~~~~~~~~~~ 134 (179)
++-.-..|.|.||.++++..+..+..
T Consensus 383 vIyaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 383 VIYAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred EEEeccCCeEEEEecCCCCEEEEEEe
Confidence 23455678899999998887766554
No 399
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=95.53 E-value=0.48 Score=32.58 Aligned_cols=63 Identities=17% Similarity=0.313 Sum_probs=43.5
Q ss_pred CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCcccc
Q 038439 65 DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVT 130 (179)
Q Consensus 65 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~ 130 (179)
+.|+.|..+| +.+++.........+. +...|..+...|+-+.+++-+ |+.+.++++..-....
T Consensus 8 ~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~ 70 (275)
T PF00780_consen 8 DRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVS 70 (275)
T ss_pred CEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccc
Confidence 6788888888 8999983332222222 233489999988877666554 5999999998755543
No 400
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=95.23 E-value=0.96 Score=34.22 Aligned_cols=106 Identities=13% Similarity=0.160 Sum_probs=58.5
Q ss_pred CCCcEEEEecCCCcceeeecCCCC--------------------Ce-EEEEEeeCCCEEEEeccCC--------------
Q 038439 72 TDSTLRLWDVKENLPVRTFRGHMN--------------------EK-NFVGLTVNSEYIACGSESN-------------- 116 (179)
Q Consensus 72 ~d~~v~iwd~~~~~~~~~~~~~~~--------------------~v-~~~~~~~~~~~~~~~~~d~-------------- 116 (179)
.++.+.-+|..+++.+-.+..... .+ ...++.+.+..++.++.++
T Consensus 173 ~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~ 252 (488)
T cd00216 173 VRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDN 252 (488)
T ss_pred CCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCC
Confidence 367888999999987766643211 01 1234445566777776554
Q ss_pred ----cEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCC---eEEEEeCCCcEEEEeecC
Q 038439 117 ----EVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSP---TMLTANSQGTIKVLVLAA 179 (179)
Q Consensus 117 ----~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~l~~~~~dg~i~iwd~~~ 179 (179)
.|...|..+++.+-.+....+..... .......+..+. .-++. .++.++.+|.+...|.++
T Consensus 253 ~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~-~~~s~p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~t 320 (488)
T cd00216 253 LYTDSIVALDADTGKVKWFYQTTPHDLWDY-DGPNQPSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTT 320 (488)
T ss_pred CceeeEEEEcCCCCCEEEEeeCCCCCCccc-ccCCCCeEEecc-ccCCCeeEEEEEECCCceEEEEECCC
Confidence 69999999999886655432211000 000000111111 01232 567777788887777653
No 401
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.14 E-value=0.85 Score=33.07 Aligned_cols=57 Identities=16% Similarity=0.097 Sum_probs=30.2
Q ss_pred eeEEEEeeCCeEEEecCCCcEEEEecCC-C----cc--e-eeecC----CCCCeEEEEEeeCCCEEEEec
Q 038439 56 VSYVKFLSNDELASASTDSTLRLWDVKE-N----LP--V-RTFRG----HMNEKNFVGLTVNSEYIACGS 113 (179)
Q Consensus 56 i~~~~~~~~~~l~~~~~d~~v~iwd~~~-~----~~--~-~~~~~----~~~~v~~~~~~~~~~~~~~~~ 113 (179)
...+++.+++ ++.++.....++.|... + +. + ..+.. +......+.|.|||.++++-+
T Consensus 74 p~Gi~~~~~G-lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 74 VTGLAVAVGG-VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred ccceeEecCC-EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 3567776667 44555444334445432 1 11 1 12222 123467899999998766544
No 402
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=95.11 E-value=0.47 Score=31.69 Aligned_cols=62 Identities=19% Similarity=0.256 Sum_probs=46.1
Q ss_pred CeEEEecCCCcEEEEecCCCcceeee-------c-------CCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCc
Q 038439 65 DELASASTDSTLRLWDVKENLPVRTF-------R-------GHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISK 127 (179)
Q Consensus 65 ~~l~~~~~d~~v~iwd~~~~~~~~~~-------~-------~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~ 127 (179)
.++++.+.+|.+++||+.+.+.+..- . .....|..+.++.+|.-+++-+ +|..+.|+...+.
T Consensus 23 ~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L~~ 98 (219)
T PF07569_consen 23 SYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDLGC 98 (219)
T ss_pred CEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccccce
Confidence 78899999999999999987644321 1 2345678888888888777654 5788899876543
No 403
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=95.07 E-value=0.75 Score=33.89 Aligned_cols=39 Identities=13% Similarity=0.077 Sum_probs=33.0
Q ss_pred CCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccc
Q 038439 95 NEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHR 133 (179)
Q Consensus 95 ~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~ 133 (179)
..+.++..+|.+++.++...-|.|.++|+.++..+..++
T Consensus 308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWK 346 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWK 346 (415)
T ss_pred ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhc
Confidence 457789999999998888888999999999988776655
No 404
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.06 E-value=1.2 Score=35.59 Aligned_cols=69 Identities=10% Similarity=0.018 Sum_probs=49.1
Q ss_pred CeEEEecCCCcEEEEecCCCcceeeecCCCCC--------eEEEEEee----------------CCCEEEEeccCCcEEE
Q 038439 65 DELASASTDSTLRLWDVKENLPVRTFRGHMNE--------KNFVGLTV----------------NSEYIACGSESNEVYV 120 (179)
Q Consensus 65 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~--------v~~~~~~~----------------~~~~~~~~~~d~~v~v 120 (179)
+.++.++.++.|.-.|..+++.+-.+...... .+.+++.. .+..++.++.|+.+.-
T Consensus 195 g~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiA 274 (764)
T TIGR03074 195 DTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIA 274 (764)
T ss_pred CEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEE
Confidence 67788888899999999999888776532211 12233321 2447888889999999
Q ss_pred EEcCCCccccccc
Q 038439 121 YHKEISKPVTWHR 133 (179)
Q Consensus 121 wd~~~~~~~~~~~ 133 (179)
.|.++++.+..+.
T Consensus 275 LDA~TGk~~W~fg 287 (764)
T TIGR03074 275 LDADTGKLCEDFG 287 (764)
T ss_pred EECCCCCEEEEec
Confidence 9999999886543
No 405
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=94.99 E-value=0.1 Score=24.39 Aligned_cols=31 Identities=16% Similarity=0.085 Sum_probs=22.6
Q ss_pred eCCCEEEEec-cCCcEEEEEcCCCcccccccc
Q 038439 104 VNSEYIACGS-ESNEVYVYHKEISKPVTWHRF 134 (179)
Q Consensus 104 ~~~~~~~~~~-~d~~v~vwd~~~~~~~~~~~~ 134 (179)
|++++++++. .++.|.++|..+++.+.....
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 5677665544 578999999988877766554
No 406
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=94.94 E-value=0.5 Score=30.27 Aligned_cols=30 Identities=13% Similarity=0.246 Sum_probs=24.4
Q ss_pred cceEEEEEEccCC------CeEEEEeCCCcEEEEee
Q 038439 148 SYFISAVCWKSDS------PTMLTANSQGTIKVLVL 177 (179)
Q Consensus 148 ~~~i~~~~~~~~~------~~l~~~~~dg~i~iwd~ 177 (179)
...+..++|||.| -+|++.+.++.|.||.-
T Consensus 85 ~~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~ 120 (173)
T PF12657_consen 85 SSQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGP 120 (173)
T ss_pred cccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEec
Confidence 3478999999954 36888999999999963
No 407
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=94.91 E-value=1.8 Score=35.56 Aligned_cols=156 Identities=14% Similarity=0.194 Sum_probs=86.7
Q ss_pred cEEEEEcCCceeEEeecCCC-----ceeEEEEcCCCCe-EEEEe-----------------------CCCcee-eecccC
Q 038439 5 KVKVWCTRQEASVLNIDMKA-----NICCVKYNPGSSN-YIAKY-----------------------QSTAPC-VHGHKK 54 (179)
Q Consensus 5 ~i~vwd~~~~~~~~~~~~~~-----~v~~~~~~~~~~~-~~~~~-----------------------~~~~~~-~~~~~~ 54 (179)
.|++.|..+++.+..++++. .+.++.|+..... +++++ +.++.+ +- |..
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lell-h~T 932 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELL-HKT 932 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeee-ecc
Confidence 58899998888777775432 3777888766544 55555 112222 11 111
Q ss_pred cee--EEEEeeC-CeEEEecCCCcEEEEecCCCcceeeecC--CCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCC--Cc
Q 038439 55 AVS--YVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRG--HMNEKNFVGLTVNSEYIACGSESNEVYVYHKEI--SK 127 (179)
Q Consensus 55 ~i~--~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~--~~ 127 (179)
.+. -.+..|- +++++ +....+++||+-..++++..+. -...|..+.+ .+..+++|.....|.++-.+. .+
T Consensus 933 ~~~~~v~Ai~~f~~~~La-gvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~n~ 1009 (1205)
T KOG1898|consen 933 EIPGPVGAICPFQGRVLA-GVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRREDNQ 1009 (1205)
T ss_pred CCCccceEEeccCCEEEE-ecccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCCCe
Confidence 121 2344566 54444 4567899999988777665432 2334555554 466788887766666554443 33
Q ss_pred cccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEe
Q 038439 128 PVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLV 176 (179)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd 176 (179)
.+. +.-... ...|+++.+ -|...++.+..=|.+.+-.
T Consensus 1010 l~~-fadD~~----------pR~Vt~~~~-lD~~tvagaDrfGNi~~vR 1046 (1205)
T KOG1898|consen 1010 LIV-FADDPV----------PRHVTALEL-LDYDTVAGADRFGNIAVVR 1046 (1205)
T ss_pred EEE-EeCCCc----------cceeeEEEE-ecCCceeeccccCcEEEEE
Confidence 332 221111 334555544 3555677776666666543
No 408
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.79 E-value=1.6 Score=34.49 Aligned_cols=113 Identities=18% Similarity=0.224 Sum_probs=71.8
Q ss_pred ceeEEEEee--C-CeEEEecCCCcEEEEecCC-------C-------------cceeeecCCCCCeEEEEEe--eCCCEE
Q 038439 55 AVSYVKFLS--N-DELASASTDSTLRLWDVKE-------N-------------LPVRTFRGHMNEKNFVGLT--VNSEYI 109 (179)
Q Consensus 55 ~i~~~~~~~--~-~~l~~~~~d~~v~iwd~~~-------~-------------~~~~~~~~~~~~v~~~~~~--~~~~~~ 109 (179)
.|+-|.... . ..|+.+..||.|.+|...+ . ++-..+. ....++.++++ ...++|
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlI 180 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLI 180 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEE
Confidence 355554332 2 6788999999999996532 0 0111122 24467889998 778889
Q ss_pred EEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCC---C---eEEEEeCCCcEEEEee
Q 038439 110 ACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDS---P---TMLTANSQGTIKVLVL 177 (179)
Q Consensus 110 ~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~---~l~~~~~dg~i~iwd~ 177 (179)
|+++....|.||-....+..... ...+ . +...|.+++|-++. . +|++++-.|.+-+|++
T Consensus 181 AVSsNs~~VTVFaf~l~~~r~~~-~~s~-------~-~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 181 AVSSNSQEVTVFAFALVDERFYH-VPSH-------Q-HSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEecCCceEEEEEEecccccccc-cccc-------c-cccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 98888888888766542111110 0010 0 15678889987643 2 7888999999999887
No 409
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=94.61 E-value=0.96 Score=31.13 Aligned_cols=108 Identities=16% Similarity=0.193 Sum_probs=62.8
Q ss_pred CceeEEEEeeC-CeEEEecCCCcEEEEecCCCcceeee--------------cCCCCCeEEEE--EeeCCCEEEEeccCC
Q 038439 54 KAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTF--------------RGHMNEKNFVG--LTVNSEYIACGSESN 116 (179)
Q Consensus 54 ~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~--------------~~~~~~v~~~~--~~~~~~~~~~~~~d~ 116 (179)
..|..+...|+ +.++.-+ |+.+.++++..-...... ......+...+ -.+.+...+......
T Consensus 36 ~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk 114 (275)
T PF00780_consen 36 SSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKK 114 (275)
T ss_pred ceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECC
Confidence 34889999998 7766665 499999998764332210 01122333333 112343444444456
Q ss_pred cEEEEEcCCC-----ccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439 117 EVYVYHKEIS-----KPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 117 ~v~vwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
.|.+|..... +....+.. ...+..++|. ++.++.|..++ ..+.|+.
T Consensus 115 ~i~i~~~~~~~~~f~~~~ke~~l-------------p~~~~~i~~~--~~~i~v~~~~~-f~~idl~ 165 (275)
T PF00780_consen 115 KILIYEWNDPRNSFSKLLKEISL-------------PDPPSSIAFL--GNKICVGTSKG-FYLIDLN 165 (275)
T ss_pred EEEEEEEECCcccccceeEEEEc-------------CCCcEEEEEe--CCEEEEEeCCc-eEEEecC
Confidence 8888887653 23333333 4567888887 56677776554 5566654
No 410
>PRK10115 protease 2; Provisional
Probab=94.52 E-value=1.9 Score=34.20 Aligned_cols=70 Identities=9% Similarity=-0.023 Sum_probs=43.9
Q ss_pred ceeEEEEeeC-CeEEEecC-CC----cEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccC------CcEEEEE
Q 038439 55 AVSYVKFLSN-DELASAST-DS----TLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSES------NEVYVYH 122 (179)
Q Consensus 55 ~i~~~~~~~~-~~l~~~~~-d~----~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d------~~v~vwd 122 (179)
.+..+.++|+ ++|+.+.. +| .+++.|+.+++.+...-... -..++|.+|++.|+....+ ..|+.++
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--EPSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--ceEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 4667889999 66655432 22 58888998776432221111 1469999998876554332 3577778
Q ss_pred cCCC
Q 038439 123 KEIS 126 (179)
Q Consensus 123 ~~~~ 126 (179)
+.++
T Consensus 206 lgt~ 209 (686)
T PRK10115 206 IGTP 209 (686)
T ss_pred CCCC
Confidence 8776
No 411
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=94.51 E-value=0.99 Score=30.89 Aligned_cols=144 Identities=11% Similarity=0.036 Sum_probs=79.5
Q ss_pred CceeEEEEcCCCCeEEEEe--CCCcee--e--------ecccCceeEEEEeeC-CeEEEecCCCcEEEEe-cCCCcce-e
Q 038439 24 ANICCVKYNPGSSNYIAKY--QSTAPC--V--------HGHKKAVSYVKFLSN-DELASASTDSTLRLWD-VKENLPV-R 88 (179)
Q Consensus 24 ~~v~~~~~~~~~~~~~~~~--~~~~~~--~--------~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd-~~~~~~~-~ 88 (179)
..+.+.+++++++.+.++. .....+ . ......+....|.++ ..++....+...+++. ...++.. .
T Consensus 24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~ 103 (253)
T PF10647_consen 24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPV 103 (253)
T ss_pred ccccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeE
Confidence 3688999999997776665 233333 0 001235666778888 5555555566666663 2333221 2
Q ss_pred eecCC--CCCeEEEEEeeCCCEEEEec---cCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeE
Q 038439 89 TFRGH--MNEKNFVGLTVNSEYIACGS---ESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTM 163 (179)
Q Consensus 89 ~~~~~--~~~v~~~~~~~~~~~~~~~~---~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 163 (179)
.+... ...|..+.++|||..++.-. .++.|.+=-+.....-....+..+.. ........+..+.|.+++.++
T Consensus 104 ~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~---~~~~~~~~v~~v~W~~~~~L~ 180 (253)
T PF10647_consen 104 EVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRR---VAPPLLSDVTDVAWSDDSTLV 180 (253)
T ss_pred EecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceE---ecccccCcceeeeecCCCEEE
Confidence 22221 12799999999999876554 35667766544221110000000000 000004578999999998877
Q ss_pred EEEeCCC
Q 038439 164 LTANSQG 170 (179)
Q Consensus 164 ~~~~~dg 170 (179)
+.+...+
T Consensus 181 V~~~~~~ 187 (253)
T PF10647_consen 181 VLGRSAG 187 (253)
T ss_pred EEeCCCC
Confidence 7766544
No 412
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=94.44 E-value=1 Score=30.81 Aligned_cols=111 Identities=15% Similarity=0.051 Sum_probs=63.5
Q ss_pred ceeEEEEeeC-CeEEEec-CCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEE-cCCCccccc
Q 038439 55 AVSYVKFLSN-DELASAS-TDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYH-KEISKPVTW 131 (179)
Q Consensus 55 ~i~~~~~~~~-~~l~~~~-~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd-~~~~~~~~~ 131 (179)
.+.+.+++++ +.++... .++.-.+|-...+....... ....+..-.|++++...+....+....++. ..+++...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~- 102 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP- 102 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCccee-
Confidence 6788899999 6555544 23333333333333333332 223567788999988777766666666664 33332211
Q ss_pred cccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeC---CCcEEEE
Q 038439 132 HRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANS---QGTIKVL 175 (179)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~iw 175 (179)
....... . ...|..+.++|||..++.... ++.|.+-
T Consensus 103 ~~v~~~~------~--~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va 141 (253)
T PF10647_consen 103 VEVDWPG------L--RGRITALRVSPDGTRVAVVVEDGGGGRVYVA 141 (253)
T ss_pred EEecccc------c--CCceEEEEECCCCcEEEEEEecCCCCeEEEE
Confidence 1111110 0 227999999999998877662 4566553
No 413
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=94.18 E-value=1.2 Score=30.59 Aligned_cols=160 Identities=11% Similarity=0.084 Sum_probs=80.7
Q ss_pred ccEEEEEcCCceeEEeecCCCc--eeEEEEcCCCCeEEEEe-----------CCCcee-eecccCceeEEEEeeC-CeEE
Q 038439 4 GKVKVWCTRQEASVLNIDMKAN--ICCVKYNPGSSNYIAKY-----------QSTAPC-VHGHKKAVSYVKFLSN-DELA 68 (179)
Q Consensus 4 ~~i~vwd~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~~-----------~~~~~~-~~~~~~~i~~~~~~~~-~~l~ 68 (179)
..|+.+|+.+++.+........ -..++...+ .++... .+.+.+ -....+.=+.++ .+ ..|+
T Consensus 68 S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d--~l~qLTWk~~~~f~yd~~tl~~~~~~~y~~EGWGLt--~dg~~Li 143 (264)
T PF05096_consen 68 SSLRKVDLETGKVLQSVPLPPRYFGEGITILGD--KLYQLTWKEGTGFVYDPNTLKKIGTFPYPGEGWGLT--SDGKRLI 143 (264)
T ss_dssp EEEEEEETTTSSEEEEEE-TTT--EEEEEEETT--EEEEEESSSSEEEEEETTTTEEEEEEE-SSS--EEE--ECSSCEE
T ss_pred EEEEEEECCCCcEEEEEECCccccceeEEEECC--EEEEEEecCCeEEEEccccceEEEEEecCCcceEEE--cCCCEEE
Confidence 4788899999887666543222 122222222 222222 233333 111122334444 34 5666
Q ss_pred EecCCCcEEEEecCCCcceeeecCC-----CCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCC---CC
Q 038439 69 SASTDSTLRLWDVKENLPVRTFRGH-----MNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPD---MD 140 (179)
Q Consensus 69 ~~~~d~~v~iwd~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~---~~ 140 (179)
.+.....+..+|..+.+....+.-. -..++.+.|- +|...|=.-....|...|..+|+....+.+..-. ..
T Consensus 144 ~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~ 222 (264)
T PF05096_consen 144 MSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGR 222 (264)
T ss_dssp EE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTS
T ss_pred EECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccc
Confidence 6666788999999887776665432 2245556664 6766665556677888899998865544321100 00
Q ss_pred CCcccCCcceEEEEEEccCCCeEEEEeC
Q 038439 141 DTDEDAGSYFISAVCWKSDSPTMLTANS 168 (179)
Q Consensus 141 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 168 (179)
.........-.+.+++.|..+.++..+.
T Consensus 223 ~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 223 DKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp TTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred cccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 0000001346789999997776666554
No 414
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.16 E-value=1.4 Score=31.12 Aligned_cols=139 Identities=8% Similarity=0.071 Sum_probs=68.6
Q ss_pred CCceeEEEEcCCCCeEEEEeCCCcee-------------eecccCceeEEEEeeC-CeEEEecCCCcEEEEecC-CCcc-
Q 038439 23 KANICCVKYNPGSSNYIAKYQSTAPC-------------VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVK-ENLP- 86 (179)
Q Consensus 23 ~~~v~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~-~~~~- 86 (179)
.+.+..+.-+++| .+++++..+..+ -..-...|..|.|.|+ .+.+ ....+.++.=+.. ..+.
T Consensus 144 ~gs~~~~~r~~dG-~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~-~~~Gg~~~~s~~~~~~~~w 221 (302)
T PF14870_consen 144 SGSINDITRSSDG-RYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWM-LARGGQIQFSDDPDDGETW 221 (302)
T ss_dssp ---EEEEEE-TTS--EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEE-EETTTEEEEEE-TTEEEEE
T ss_pred cceeEeEEECCCC-cEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEE-EeCCcEEEEccCCCCcccc
Confidence 4568888889999 566666333222 2223578999999999 5545 4478888877622 1111
Q ss_pred ---eeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeE
Q 038439 87 ---VRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTM 163 (179)
Q Consensus 87 ---~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 163 (179)
+..++...-.+..++|.++++..++|+. |.+ +.....++--+..+..... ...++.+.|.++.+-+
T Consensus 222 ~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGktW~~~~~~~~~---------~~n~~~i~f~~~~~gf 290 (302)
T PF14870_consen 222 SEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGKTWQKDRVGENV---------PSNLYRIVFVNPDKGF 290 (302)
T ss_dssp ---B-TTSS--S-EEEEEESSSS-EEEEEST-T-E-EEESSTTSS-EE-GGGTTS---------SS---EEEEEETTEEE
T ss_pred ccccCCcccCceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCccceECccccCC---------CCceEEEEEcCCCceE
Confidence 1111122334778899988887777664 433 3444555543332211110 4457888887654444
Q ss_pred EEEeCCCcEEEE
Q 038439 164 LTANSQGTIKVL 175 (179)
Q Consensus 164 ~~~~~dg~i~iw 175 (179)
+.+.+|.|--|
T Consensus 291 -~lG~~G~ll~~ 301 (302)
T PF14870_consen 291 -VLGQDGVLLRY 301 (302)
T ss_dssp -EE-STTEEEEE
T ss_pred -EECCCcEEEEe
Confidence 44557766544
No 415
>PHA03098 kelch-like protein; Provisional
Probab=93.94 E-value=2.2 Score=32.65 Aligned_cols=102 Identities=12% Similarity=0.047 Sum_probs=48.0
Q ss_pred CeEEEecCC------CcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccC--------CcEEEEEcCCCcccc
Q 038439 65 DELASASTD------STLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSES--------NEVYVYHKEISKPVT 130 (179)
Q Consensus 65 ~~l~~~~~d------~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d--------~~v~vwd~~~~~~~~ 130 (179)
..++.|+.+ ..+..||+.+.+-...-..........+...++..++.|+.+ ..+.+||..+.+-..
T Consensus 391 ~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~ 470 (534)
T PHA03098 391 LIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTE 470 (534)
T ss_pred EEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceee
Confidence 445555532 357788887643221111011111111223356666777643 237888988765332
Q ss_pred ccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCC-----CcEEEEeec
Q 038439 131 WHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQ-----GTIKVLVLA 178 (179)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~iwd~~ 178 (179)
.-....+ ......+.+ +++.++.|+.+ +.+.+||..
T Consensus 471 ~~~~~~~----------r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~ 511 (534)
T PHA03098 471 LSSLNFP----------RINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDK 511 (534)
T ss_pred CCCCCcc----------cccceEEEE--CCEEEEEcCCcCCcccceeEEEeCC
Confidence 2111100 111111222 66667777654 467888765
No 416
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=93.86 E-value=0.19 Score=33.36 Aligned_cols=61 Identities=13% Similarity=0.126 Sum_probs=40.3
Q ss_pred CeEEEecCCCcEEEEecCCCcceeeecCCC-CCeEEEEEeeCCCEEEEe--ccCCcEEEEEcCC
Q 038439 65 DELASASTDSTLRLWDVKENLPVRTFRGHM-NEKNFVGLTVNSEYIACG--SESNEVYVYHKEI 125 (179)
Q Consensus 65 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~--~~d~~v~vwd~~~ 125 (179)
.+..+++.++.||.|++.-.+.+.....|. .+......+..+++++.. +.|..++.|++..
T Consensus 115 ~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 115 SLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 478889999999999998777665555555 344444444445555555 5666666666654
No 417
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=93.68 E-value=0.45 Score=36.44 Aligned_cols=69 Identities=7% Similarity=0.053 Sum_probs=42.4
Q ss_pred C-CeEEEecCCCcEEEEecCC----Ccceee-----------ec-----------CCCCCeEEEEEee----CCCEEEEe
Q 038439 64 N-DELASASTDSTLRLWDVKE----NLPVRT-----------FR-----------GHMNEKNFVGLTV----NSEYIACG 112 (179)
Q Consensus 64 ~-~~l~~~~~d~~v~iwd~~~----~~~~~~-----------~~-----------~~~~~v~~~~~~~----~~~~~~~~ 112 (179)
+ ..++.+..||.+....... +..... +. ........+++.+ +..++++.
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl 236 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL 236 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence 5 7778888888887777654 111110 10 0123345566665 67889999
Q ss_pred ccCCcEEEEEcCCCcccccc
Q 038439 113 SESNEVYVYHKEISKPVTWH 132 (179)
Q Consensus 113 ~~d~~v~vwd~~~~~~~~~~ 132 (179)
+.|+.+++||+.+++.+...
T Consensus 237 ~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 237 SRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp ETTSEEEEEETTTTCEEEEE
T ss_pred eCCCeEEEEECCCCeEEEEe
Confidence 99999999999999885544
No 418
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=93.65 E-value=2.3 Score=32.61 Aligned_cols=68 Identities=12% Similarity=0.083 Sum_probs=47.5
Q ss_pred CeEEEecCCCcEEEEecCCCcceeeecCCC-CCeE----------EEEEeeCCCEEEEeccCCcEEEEEcCCCccccccc
Q 038439 65 DELASASTDSTLRLWDVKENLPVRTFRGHM-NEKN----------FVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHR 133 (179)
Q Consensus 65 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~-~~v~----------~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~ 133 (179)
+.++.++.++.|.-.|..+++.+-++.... ..+. .+++ .+..++.++.++.+...|.++++.+-...
T Consensus 70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~~ 147 (527)
T TIGR03075 70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSKK 147 (527)
T ss_pred CEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeecc
Confidence 677777888899999999998887665321 1111 1122 23467778889999999999999876655
Q ss_pred c
Q 038439 134 F 134 (179)
Q Consensus 134 ~ 134 (179)
.
T Consensus 148 ~ 148 (527)
T TIGR03075 148 N 148 (527)
T ss_pred c
Confidence 4
No 419
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=93.39 E-value=2.1 Score=30.66 Aligned_cols=162 Identities=10% Similarity=0.068 Sum_probs=80.3
Q ss_pred ccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEEe--------------------CCCcee----eecc-cCc---
Q 038439 4 GKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAKY--------------------QSTAPC----VHGH-KKA--- 55 (179)
Q Consensus 4 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--------------------~~~~~~----~~~~-~~~--- 55 (179)
+++.|+|..+++.+-.+...-.- .+..+|+++.++++. .+-.+. +... ...
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~~~-~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~ 95 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGFLG-NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVP 95 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEESSE-EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS-
T ss_pred ceEEEEECCCCcEEEEeecccCC-ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecc
Confidence 57889998888887777633222 256799998777665 111111 2211 110
Q ss_pred -eeEEEEeeC-CeEEEe--cCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeC-CCEEEEeccCCcEEEEEcCC-Cccc
Q 038439 56 -VSYVKFLSN-DELASA--STDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVN-SEYIACGSESNEVYVYHKEI-SKPV 129 (179)
Q Consensus 56 -i~~~~~~~~-~~l~~~--~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~d~~v~vwd~~~-~~~~ 129 (179)
-..+.++++ ++++.. +-...|.|-|+..++.+..+... . |...-|- .+-|.+-|.||.+.-..+.. |+..
T Consensus 96 ~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P--G--C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~ 171 (342)
T PF06433_consen 96 YKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP--G--CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEA 171 (342)
T ss_dssp -GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT--S--EEEEEEEETTEEEEEETTSCEEEEEETSTSSEE
T ss_pred cccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC--C--EEEEEecCCCceEEEecCCceEEEEECCCCCEe
Confidence 112233444 322222 22234555566655555555421 1 2222332 34577888899999998884 5543
Q ss_pred cccc-cCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439 130 TWHR-FSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 130 ~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
.... ..... .......-.+...+..++..+.+|.|+--|+.
T Consensus 172 ~~~t~~F~~~--------~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dls 213 (342)
T PF06433_consen 172 QKSTKVFDPD--------DDPLFEHPAYSRDGGRLYFVSYEGNVYSADLS 213 (342)
T ss_dssp EEEEEESSTT--------TS-B-S--EEETTTTEEEEEBTTSEEEEEEET
T ss_pred EeeccccCCC--------CcccccccceECCCCeEEEEecCCEEEEEecc
Confidence 2211 11110 01122333445555566667778877776653
No 420
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.36 E-value=2.5 Score=31.55 Aligned_cols=73 Identities=15% Similarity=0.179 Sum_probs=48.7
Q ss_pred CCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcE
Q 038439 93 HMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTI 172 (179)
Q Consensus 93 ~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 172 (179)
..++|.++.|++|.+.+|+--.+..|.+++....+.......... .....|...+|..+ .-+|..+..| +
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck--------~k~~~IlGF~W~~s-~e~A~i~~~G-~ 134 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECK--------TKNANILGFCWTSS-TEIAFITDQG-I 134 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhc--------cCcceeEEEEEecC-eeEEEEecCC-e
Confidence 456899999999999999999999999999865444333222111 11445888889765 3355444443 4
Q ss_pred EEE
Q 038439 173 KVL 175 (179)
Q Consensus 173 ~iw 175 (179)
.+|
T Consensus 135 e~y 137 (657)
T KOG2377|consen 135 EFY 137 (657)
T ss_pred EEE
Confidence 444
No 421
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=93.29 E-value=1.7 Score=33.36 Aligned_cols=76 Identities=9% Similarity=0.127 Sum_probs=39.4
Q ss_pred eCCCEEEEeccCCcEEEEEcCC----CccccccccCCC--------CCCCC--cccCCcceEEEEEEcc----CCCeEEE
Q 038439 104 VNSEYIACGSESNEVYVYHKEI----SKPVTWHRFSSP--------DMDDT--DEDAGSYFISAVCWKS----DSPTMLT 165 (179)
Q Consensus 104 ~~~~~~~~~~~d~~v~vwd~~~----~~~~~~~~~~~~--------~~~~~--~~~~~~~~i~~~~~~~----~~~~l~~ 165 (179)
++...++.+..||.+....+.. +........... ..... ...........++.++ +..++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 3667788888899888887764 211111111110 00000 0000133455556655 7789999
Q ss_pred EeCCCcEEEEeecC
Q 038439 166 ANSQGTIKVLVLAA 179 (179)
Q Consensus 166 ~~~dg~i~iwd~~~ 179 (179)
.+.|+++++||+.+
T Consensus 236 l~~D~~LRiW~l~t 249 (547)
T PF11715_consen 236 LSRDHTLRIWSLET 249 (547)
T ss_dssp EETTSEEEEEETTT
T ss_pred EeCCCeEEEEECCC
Confidence 99999999999864
No 422
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=93.16 E-value=2.3 Score=30.45 Aligned_cols=49 Identities=14% Similarity=0.132 Sum_probs=30.3
Q ss_pred eeEEEEeeCCeEEEecCCCcEEEEecCCCcc---eeee----cCCCCCeEEEEEeeC
Q 038439 56 VSYVKFLSNDELASASTDSTLRLWDVKENLP---VRTF----RGHMNEKNFVGLTVN 105 (179)
Q Consensus 56 i~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~---~~~~----~~~~~~v~~~~~~~~ 105 (179)
-+.|+|.|++.++.+...|.|++++ ..+.. +..+ .........++++|+
T Consensus 4 P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~ 59 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPD 59 (331)
T ss_dssp EEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred ceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccc
Confidence 4678999994445556689999998 33332 2222 123446788999995
No 423
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=92.78 E-value=0.89 Score=25.63 Aligned_cols=42 Identities=19% Similarity=0.278 Sum_probs=26.1
Q ss_pred eccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEE
Q 038439 112 GSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTA 166 (179)
Q Consensus 112 ~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 166 (179)
+..+|.+.-||+.+++......- -...+.++.++|+..++.+
T Consensus 33 ~~~~GRll~ydp~t~~~~vl~~~-------------L~fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETTVLLDG-------------LYFPNGVALSPDESFVLVA 74 (89)
T ss_dssp T---EEEEEEETTTTEEEEEEEE-------------ESSEEEEEE-TTSSEEEEE
T ss_pred CCCCcCEEEEECCCCeEEEehhC-------------CCccCeEEEcCCCCEEEEE
Confidence 34467788899988765333221 3357889999999966554
No 424
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=92.63 E-value=4.6 Score=32.61 Aligned_cols=95 Identities=14% Similarity=0.111 Sum_probs=59.6
Q ss_pred CceeEEEEeeC--CeEEEecCCCcEEEEecCCCc-----ceeeecCCC----------CCeEEEEEeeCCCEEEEeccCC
Q 038439 54 KAVSYVKFLSN--DELASASTDSTLRLWDVKENL-----PVRTFRGHM----------NEKNFVGLTVNSEYIACGSESN 116 (179)
Q Consensus 54 ~~i~~~~~~~~--~~l~~~~~d~~v~iwd~~~~~-----~~~~~~~~~----------~~v~~~~~~~~~~~~~~~~~d~ 116 (179)
.+...++|+|. ..||.....|.-.||++.... .+....... ..-..+.|.++.+.+++++. .
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~ 224 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-S 224 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-C
Confidence 35678999998 899999999999999992111 111111111 12236778888777777664 5
Q ss_pred cEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccC
Q 038439 117 EVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSD 159 (179)
Q Consensus 117 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 159 (179)
.+.++|+++......+..... ...|..+.-+|.
T Consensus 225 ~l~~~d~~~~~~~~~l~~~~~----------~~~IlDv~~~~~ 257 (765)
T PF10214_consen 225 KLMLIDFESNWQTEYLVTAKT----------WSWILDVKRSPD 257 (765)
T ss_pred ceEEEECCCCCccchhccCCC----------hhheeeEEecCC
Confidence 678999987655331111111 456777777765
No 425
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=92.37 E-value=3 Score=29.80 Aligned_cols=71 Identities=6% Similarity=0.111 Sum_probs=43.5
Q ss_pred eEEEEEeeCCCEEEEeccC------CcEEEEEcCCCccccccccCCCCCCCC---cccCCcceEEEEEEccCCCeEEEEe
Q 038439 97 KNFVGLTVNSEYIACGSES------NEVYVYHKEISKPVTWHRFSSPDMDDT---DEDAGSYFISAVCWKSDSPTMLTAN 167 (179)
Q Consensus 97 v~~~~~~~~~~~~~~~~~d------~~v~vwd~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~l~~~~ 167 (179)
..++++.++|.++++.-.+ ..|.-++.. ++....+.......... ...........++++|+|+.|+++.
T Consensus 87 ~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~ 165 (326)
T PF13449_consen 87 PEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM 165 (326)
T ss_pred hhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence 4467777788888776666 778888876 65544443221110000 1111256789999999999776655
Q ss_pred C
Q 038439 168 S 168 (179)
Q Consensus 168 ~ 168 (179)
.
T Consensus 166 E 166 (326)
T PF13449_consen 166 E 166 (326)
T ss_pred C
Confidence 4
No 426
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=92.34 E-value=0.57 Score=21.45 Aligned_cols=30 Identities=13% Similarity=0.230 Sum_probs=18.6
Q ss_pred CCCCCeEEEEEeeCCCEEEEec-cC--CcEEEE
Q 038439 92 GHMNEKNFVGLTVNSEYIACGS-ES--NEVYVY 121 (179)
Q Consensus 92 ~~~~~v~~~~~~~~~~~~~~~~-~d--~~v~vw 121 (179)
..........|+|||+.|+-.+ .+ |.-.||
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3445567889999999876544 34 555554
No 427
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=92.32 E-value=5.1 Score=32.38 Aligned_cols=30 Identities=13% Similarity=0.277 Sum_probs=26.3
Q ss_pred cceEEEEEEcc-CCCeEEEEeCCCcEEEEee
Q 038439 148 SYFISAVCWKS-DSPTMLTANSQGTIKVLVL 177 (179)
Q Consensus 148 ~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~ 177 (179)
+.+...++|+| +.+.||.....|...||++
T Consensus 145 g~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i 175 (765)
T PF10214_consen 145 GFPHADVAFNPWDQRQFAIVDEKGNWSVWDI 175 (765)
T ss_pred CCccceEEeccCccceEEEEeccCcEEEEEe
Confidence 55778899998 5568999999999999998
No 428
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=91.97 E-value=2.5 Score=28.10 Aligned_cols=102 Identities=14% Similarity=0.157 Sum_probs=53.7
Q ss_pred CeEEEecCCCcEEEEecCCCcceeeecC--CC---CCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCC
Q 038439 65 DELASASTDSTLRLWDVKENLPVRTFRG--HM---NEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDM 139 (179)
Q Consensus 65 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~--~~---~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~ 139 (179)
..|+.++...+++.-|..+.....++.- .. ..++.+.| -+|..++=.-.+..|...|..+|+.+..+....-..
T Consensus 141 ~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~-VdG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~ 219 (262)
T COG3823 141 KNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEW-VDGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLK 219 (262)
T ss_pred cceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceee-eccEEEEeeeeecceEEEcCCCCcEEEEEEccCCch
Confidence 3455555566777777665443333221 11 12223333 246555544445566667777777766555433322
Q ss_pred CCCcccCCcceEEEEEEccCCCeEEEEe
Q 038439 140 DDTDEDAGSYFISAVCWKSDSPTMLTAN 167 (179)
Q Consensus 140 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 167 (179)
.......+..-.+.+++.|++..++..+
T Consensus 220 ~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 220 ELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred hcCccccccccccceeecCcCCeEEEec
Confidence 2222222245678899999885554444
No 429
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=91.73 E-value=3.1 Score=31.13 Aligned_cols=100 Identities=18% Similarity=0.234 Sum_probs=58.7
Q ss_pred eEEEecCCCcEEEE-ecCCCc-----ceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCC
Q 038439 66 ELASASTDSTLRLW-DVKENL-----PVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDM 139 (179)
Q Consensus 66 ~l~~~~~d~~v~iw-d~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~ 139 (179)
-++..+.||-|.-| |.+.+. .++.++-...++..+.-..+.+-+++-...|.+.++.....+.+.....
T Consensus 282 SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~----- 356 (733)
T COG4590 282 SLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERA----- 356 (733)
T ss_pred eEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhh-----
Confidence 36677888888876 555421 1222222223333332222344577778888888877655554432222
Q ss_pred CCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeecC
Q 038439 140 DDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA 179 (179)
Q Consensus 140 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 179 (179)
-..+.-++++|.+.++++-. .|.++++.+++
T Consensus 357 --------~~~~~~~~~Sp~~~~Ll~e~-~gki~~~~l~N 387 (733)
T COG4590 357 --------YQAPQLVAMSPNQAYLLSED-QGKIRLAQLEN 387 (733)
T ss_pred --------hcCcceeeeCcccchheeec-CCceEEEEecC
Confidence 22456688999999887654 45788887753
No 430
>PHA02713 hypothetical protein; Provisional
Probab=91.62 E-value=5.2 Score=31.00 Aligned_cols=49 Identities=6% Similarity=0.076 Sum_probs=24.4
Q ss_pred CeEEEecCCC-----cEEEEecCCCccee--eecCCCCCeEEEEEeeCCCEEEEeccC
Q 038439 65 DELASASTDS-----TLRLWDVKENLPVR--TFRGHMNEKNFVGLTVNSEYIACGSES 115 (179)
Q Consensus 65 ~~l~~~~~d~-----~v~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~d 115 (179)
..++.|+.++ .+..||..+.+-.. .+.........+ .-+|..++.|+.+
T Consensus 353 ~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~--~~~g~IYviGG~~ 408 (557)
T PHA02713 353 TIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMC--VLDQYIYIIGGRT 408 (557)
T ss_pred EEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEE--EECCEEEEEeCCC
Confidence 4556666543 47788887653221 111111111112 2367777777765
No 431
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=91.59 E-value=0.075 Score=39.28 Aligned_cols=127 Identities=10% Similarity=0.170 Sum_probs=79.5
Q ss_pred ceeEEEEcCCCCeEEEEe---------CCCcee-eecccCceeEEEEeeC--CeEEEecCCCcEEEEecCCCcceeeec-
Q 038439 25 NICCVKYNPGSSNYIAKY---------QSTAPC-VHGHKKAVSYVKFLSN--DELASASTDSTLRLWDVKENLPVRTFR- 91 (179)
Q Consensus 25 ~v~~~~~~~~~~~~~~~~---------~~~~~~-~~~~~~~i~~~~~~~~--~~l~~~~~d~~v~iwd~~~~~~~~~~~- 91 (179)
......|-|.+..+++++ +.++.+ -...++....++|..+ ..++.+-..+.+.+||+.+.. .+++.
T Consensus 36 ~pi~~~w~~e~~nlavaca~tiv~~YD~agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~ey-tqqLE~ 114 (615)
T KOG2247|consen 36 GPIIHRWRPEGHNLAVACANTIVIYYDKAGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEY-TQQLES 114 (615)
T ss_pred ccceeeEecCCCceehhhhhhHHHhhhhhcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhh-HHHHhc
Confidence 345667778776766555 223333 1122334456667666 445566678899999998643 22222
Q ss_pred CCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEE
Q 038439 92 GHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTML 164 (179)
Q Consensus 92 ~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 164 (179)
+....-.-+.|++-...++.+...|.+.+++..+.+.+... .. |...+.+++|.+.+..+.
T Consensus 115 gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~--Gk----------h~RRgtq~av~lEd~vil 175 (615)
T KOG2247|consen 115 GGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVM--GK----------HQRRGTQIAVTLEDYVIL 175 (615)
T ss_pred cCcchHHHHhhccCCccccccccccceEEEeccchhhhhhh--cc----------cccceeEEEecccceeee
Confidence 12222233778988888888988999999998887665432 11 166788999988665443
No 432
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=91.16 E-value=6 Score=30.81 Aligned_cols=70 Identities=17% Similarity=0.158 Sum_probs=40.6
Q ss_pred eEEEEeeCCeEEEecCC------CcEEEEecCCCccee--eecCCCCCeEEEEEeeCCCEEEEeccCCc-----EEEEEc
Q 038439 57 SYVKFLSNDELASASTD------STLRLWDVKENLPVR--TFRGHMNEKNFVGLTVNSEYIACGSESNE-----VYVYHK 123 (179)
Q Consensus 57 ~~~~~~~~~~l~~~~~d------~~v~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~d~~-----v~vwd~ 123 (179)
.+++...+..+++|+.| ..+..||.+..+-.. .+......... -.-+|...++|+.||. +..||.
T Consensus 326 ~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v--~~l~g~iYavGG~dg~~~l~svE~YDp 403 (571)
T KOG4441|consen 326 VGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGV--AVLDGKLYAVGGFDGEKSLNSVECYDP 403 (571)
T ss_pred ccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCcccccee--EEECCEEEEEeccccccccccEEEecC
Confidence 34444444567788888 357788887765322 12111111111 1236888899998864 777887
Q ss_pred CCCcc
Q 038439 124 EISKP 128 (179)
Q Consensus 124 ~~~~~ 128 (179)
++.+-
T Consensus 404 ~~~~W 408 (571)
T KOG4441|consen 404 VTNKW 408 (571)
T ss_pred CCCcc
Confidence 76553
No 433
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.09 E-value=5.2 Score=30.02 Aligned_cols=102 Identities=14% Similarity=0.108 Sum_probs=60.3
Q ss_pred ccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCccee----eecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCC
Q 038439 52 HKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVR----TFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEIS 126 (179)
Q Consensus 52 ~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~ 126 (179)
..++|.++.|++| ..++.--.+..|.+++....+... +.+.....|....|.... -+|.-...| +.+|.....
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~-e~A~i~~~G-~e~y~v~pe 142 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSST-EIAFITDQG-IEFYQVLPE 142 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCe-eEEEEecCC-eEEEEEchh
Confidence 4569999999999 888888899999999985433222 223334457777887653 344433333 556655432
Q ss_pred cc-ccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEe
Q 038439 127 KP-VTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTAN 167 (179)
Q Consensus 127 ~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 167 (179)
+. +...+ .+ ...|.-..|+++-+.++.++
T Consensus 143 krslRlVk--s~----------~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 143 KRSLRLVK--SH----------NLNVNWYMYCPETAVILLST 172 (657)
T ss_pred hhhhhhhh--hc----------ccCccEEEEccccceEeeec
Confidence 21 11111 11 44566677777666544433
No 434
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=91.07 E-value=0.29 Score=39.18 Aligned_cols=125 Identities=14% Similarity=0.132 Sum_probs=66.8
Q ss_pred eecccCceeEEEEeeC--CeEEEecCCCcEEEEecC--CCcceeee-----cCCCCCeEEEEEee---CCCEEEEeccCC
Q 038439 49 VHGHKKAVSYVKFLSN--DELASASTDSTLRLWDVK--ENLPVRTF-----RGHMNEKNFVGLTV---NSEYIACGSESN 116 (179)
Q Consensus 49 ~~~~~~~i~~~~~~~~--~~l~~~~~d~~v~iwd~~--~~~~~~~~-----~~~~~~v~~~~~~~---~~~~~~~~~~d~ 116 (179)
+++..+.+-.+.|... ..+. -.-|.+.|||+. .|+....+ ......+.-+.|+| +..++..+-.++
T Consensus 128 ~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~ 205 (1283)
T KOG1916|consen 128 AKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGG 205 (1283)
T ss_pred HhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCC
Confidence 4556666777776543 2222 334567788865 34332222 22234456677776 455666677778
Q ss_pred cEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439 117 EVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVL 177 (179)
Q Consensus 117 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 177 (179)
.+++....+.................+.. .+.+.--..+|||..++..+.||.++.|.+
T Consensus 206 ~i~lL~~~ra~~~l~rsHs~~~~d~a~~~--~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 206 EIRLLNINRALRSLFRSHSQRVTDMAFFA--EGVLKLASLSPDGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred ceeEeeechHHHHHHHhcCCCcccHHHHh--hchhhheeeCCCCcEEEEeecCCccceeee
Confidence 88876665433211110100000000000 111111237899999999999999998864
No 435
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=90.91 E-value=1.4 Score=24.79 Aligned_cols=39 Identities=13% Similarity=0.087 Sum_probs=18.2
Q ss_pred CccEEEEEcCCceeEEeecCCCceeEEEEcCCCCeEEEE
Q 038439 3 YGKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAK 41 (179)
Q Consensus 3 d~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 41 (179)
+|.+.-||..+++....+..=.-.+.++++|+++.++++
T Consensus 36 ~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 36 TGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVA 74 (89)
T ss_dssp -EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEE
T ss_pred CcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEE
Confidence 345555555555443333333345556666666444443
No 436
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=90.79 E-value=1.2 Score=35.98 Aligned_cols=68 Identities=16% Similarity=0.192 Sum_probs=43.7
Q ss_pred eeEEEEeeC----CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEE-----------EEEeeCCCEEEEeccCCcEEE
Q 038439 56 VSYVKFLSN----DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNF-----------VGLTVNSEYIACGSESNEVYV 120 (179)
Q Consensus 56 i~~~~~~~~----~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~-----------~~~~~~~~~~~~~~~d~~v~v 120 (179)
+.-+.|.|- .++..+-.++.+++........ ..+.+|...+.. -.++|||+.++..+.||.++.
T Consensus 183 ~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f 261 (1283)
T KOG1916|consen 183 PQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGF 261 (1283)
T ss_pred cceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccce
Confidence 344555553 4555666778888876654321 233345433332 247899999999999999998
Q ss_pred EEcC
Q 038439 121 YHKE 124 (179)
Q Consensus 121 wd~~ 124 (179)
|.+.
T Consensus 262 ~Qiy 265 (1283)
T KOG1916|consen 262 YQIY 265 (1283)
T ss_pred eeee
Confidence 8765
No 437
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=90.69 E-value=0.68 Score=20.15 Aligned_cols=23 Identities=13% Similarity=0.235 Sum_probs=19.2
Q ss_pred EEEEeccCCcEEEEEcCCCcccc
Q 038439 108 YIACGSESNEVYVYHKEISKPVT 130 (179)
Q Consensus 108 ~~~~~~~d~~v~vwd~~~~~~~~ 130 (179)
.++.++.++.+..+|.++++.+.
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W 30 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILW 30 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEE
Confidence 57778889999999999887654
No 438
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=90.35 E-value=7.2 Score=30.38 Aligned_cols=65 Identities=14% Similarity=0.103 Sum_probs=36.2
Q ss_pred CeEEEecCCC------cEEEEecCCCcce--eeecCCCCCeEEEEEeeCCCEEEEeccCCc-----EEEEEcCCCccccc
Q 038439 65 DELASASTDS------TLRLWDVKENLPV--RTFRGHMNEKNFVGLTVNSEYIACGSESNE-----VYVYHKEISKPVTW 131 (179)
Q Consensus 65 ~~l~~~~~d~------~v~iwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~-----v~vwd~~~~~~~~~ 131 (179)
...+.|+.++ .+..||..+.+.. ..+........ + -.-++..++.|+.|+. |..||.++.+-...
T Consensus 429 ~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~-a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v 506 (571)
T KOG4441|consen 429 KLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-V-AVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMV 506 (571)
T ss_pred EEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-E-EEECCEEEEECCccCCCccceEEEEcCCCCceeEc
Confidence 4556666443 5677887765432 22221122222 2 2236777888887763 77889888765443
No 439
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=90.29 E-value=3.9 Score=27.24 Aligned_cols=49 Identities=16% Similarity=0.241 Sum_probs=35.1
Q ss_pred CeEEEecCCCcEEEEecCC--CcceeeecCCCCCeEEEEEeeCCCEEEEecc
Q 038439 65 DELASASTDSTLRLWDVKE--NLPVRTFRGHMNEKNFVGLTVNSEYIACGSE 114 (179)
Q Consensus 65 ~~l~~~~~d~~v~iwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 114 (179)
..|+.+.....|.+|++.. .+.+..|.. -+.|..+.++..|+|+++--.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~ 79 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEE 79 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEe
Confidence 3444445567799999883 345556653 477889999999999998643
No 440
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=90.08 E-value=5.9 Score=29.01 Aligned_cols=99 Identities=11% Similarity=0.106 Sum_probs=46.6
Q ss_pred cCceeEEEEeeC--CeEEEecC---CC-cEEEEecCC-CcceeeecCCC--CCeEEEEEeeCCCEEEEe-----ccCCcE
Q 038439 53 KKAVSYVKFLSN--DELASAST---DS-TLRLWDVKE-NLPVRTFRGHM--NEKNFVGLTVNSEYIACG-----SESNEV 118 (179)
Q Consensus 53 ~~~i~~~~~~~~--~~l~~~~~---d~-~v~iwd~~~-~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~-----~~d~~v 118 (179)
+..+.-+.|+|. .+++.|-+ +. .-|||-+++ +.....+..+. ..+..=-|.|||..|.-- +.+..|
T Consensus 187 ~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i 266 (386)
T PF14583_consen 187 TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWI 266 (386)
T ss_dssp SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEE
T ss_pred CccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEE
Confidence 344567888998 55555533 22 236776653 33344444332 234445689999876432 235567
Q ss_pred EEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEE
Q 038439 119 YVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLT 165 (179)
Q Consensus 119 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 165 (179)
.-+|+.+++...... ......+--++||++++-
T Consensus 267 ~~~d~~t~~~~~~~~--------------~p~~~H~~ss~Dg~L~vG 299 (386)
T PF14583_consen 267 AGYDPDTGERRRLME--------------MPWCSHFMSSPDGKLFVG 299 (386)
T ss_dssp EEE-TTT--EEEEEE--------------E-SEEEEEE-TTSSEEEE
T ss_pred EeeCCCCCCceEEEe--------------CCceeeeEEcCCCCEEEe
Confidence 778888876543222 112344555678887654
No 441
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=90.04 E-value=3 Score=25.52 Aligned_cols=93 Identities=15% Similarity=0.187 Sum_probs=56.0
Q ss_pred EEeeC-CeEEEecCCCcEEEEecCCCc--------ceeeecCCCCCeEEEEEee-----CCCEEEEeccCCcEEEEEcCC
Q 038439 60 KFLSN-DELASASTDSTLRLWDVKENL--------PVRTFRGHMNEKNFVGLTV-----NSEYIACGSESNEVYVYHKEI 125 (179)
Q Consensus 60 ~~~~~-~~l~~~~~d~~v~iwd~~~~~--------~~~~~~~~~~~v~~~~~~~-----~~~~~~~~~~d~~v~vwd~~~ 125 (179)
+|... ..|+.++.-+.|.|++..... .+..+. -...|++++--+ +...|+.|+. ..+..||+..
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~ 82 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVEN 82 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEccc
Confidence 44444 677778888888888865432 233333 345567765433 2445666664 5688999998
Q ss_pred CccccccccCCCCCCCCcccCCcceEEEEEEcc----CCCeEEEEe
Q 038439 126 SKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKS----DSPTMLTAN 167 (179)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~l~~~~ 167 (179)
...+...+. ...++++.+-. +..++++|+
T Consensus 83 N~d~Fyke~-------------~DGvn~i~~g~~~~~~~~l~ivGG 115 (136)
T PF14781_consen 83 NSDLFYKEV-------------PDGVNAIVIGKLGDIPSPLVIVGG 115 (136)
T ss_pred CchhhhhhC-------------ccceeEEEEEecCCCCCcEEEECc
Confidence 877765554 44566666532 334444444
No 442
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=90.01 E-value=2.8 Score=28.61 Aligned_cols=88 Identities=11% Similarity=0.082 Sum_probs=45.9
Q ss_pred EEEEecCCCcceeeecCC-CCCeEEEEEeeCCCEEEEecc-C--CcEEEEEcCCCccccccccCCCCCCCCcccCCcceE
Q 038439 76 LRLWDVKENLPVRTFRGH-MNEKNFVGLTVNSEYIACGSE-S--NEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFI 151 (179)
Q Consensus 76 v~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~-d--~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 151 (179)
-.+||+.+.+. +.+... ......-.+-+||+++.+|+. + ..+++++.........+......+. ....-
T Consensus 48 s~~yD~~tn~~-rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~------~~RWY 120 (243)
T PF07250_consen 48 SVEYDPNTNTF-RPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQ------SGRWY 120 (243)
T ss_pred EEEEecCCCcE-EeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECccccc------CCCcc
Confidence 45788887643 333321 222223357789999999876 2 3477777654111111110000000 02233
Q ss_pred EEEEEccCCCeEEEEeCCC
Q 038439 152 SAVCWKSDSPTMLTANSQG 170 (179)
Q Consensus 152 ~~~~~~~~~~~l~~~~~dg 170 (179)
-...--|||+.|+.|+...
T Consensus 121 pT~~~L~DG~vlIvGG~~~ 139 (243)
T PF07250_consen 121 PTATTLPDGRVLIVGGSNN 139 (243)
T ss_pred ccceECCCCCEEEEeCcCC
Confidence 4455567999998888763
No 443
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=89.79 E-value=1 Score=20.58 Aligned_cols=28 Identities=11% Similarity=0.138 Sum_probs=22.5
Q ss_pred EEEEeccCCcEEEEEcCCCccccccccC
Q 038439 108 YIACGSESNEVYVYHKEISKPVTWHRFS 135 (179)
Q Consensus 108 ~~~~~~~d~~v~vwd~~~~~~~~~~~~~ 135 (179)
.++.++.+|.+...|.++|+.+-.+...
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~~ 29 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQTG 29 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEESS
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeCC
Confidence 3556688999999999999988776653
No 444
>PRK13684 Ycf48-like protein; Provisional
Probab=89.52 E-value=6.1 Score=28.37 Aligned_cols=109 Identities=7% Similarity=0.117 Sum_probs=55.4
Q ss_pred CceeEEEEeeCCeEEEecCCCcEEE-EecCCCcceeee-cCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccc
Q 038439 54 KAVSYVKFLSNDELASASTDSTLRL-WDVKENLPVRTF-RGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTW 131 (179)
Q Consensus 54 ~~i~~~~~~~~~~l~~~~~d~~v~i-wd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~ 131 (179)
..+..+.+.|++.++..+..|.+.. +|- .++.-..+ ......++.+.+.++++.++++ ..|.+.+=....++.-..
T Consensus 173 g~~~~i~~~~~g~~v~~g~~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~ 250 (334)
T PRK13684 173 GVVRNLRRSPDGKYVAVSSRGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSK 250 (334)
T ss_pred ceEEEEEECCCCeEEEEeCCceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcccc
Confidence 4567777777743444444554432 221 12212222 2234568889999998877765 457654322333333222
Q ss_pred cccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEE
Q 038439 132 HRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIK 173 (179)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 173 (179)
...... .....+..+.+.+++..++++ .+|.+.
T Consensus 251 ~~~~~~--------~~~~~l~~v~~~~~~~~~~~G-~~G~v~ 283 (334)
T PRK13684 251 PIIPEI--------TNGYGYLDLAYRTPGEIWAGG-GNGTLL 283 (334)
T ss_pred ccCCcc--------ccccceeeEEEcCCCCEEEEc-CCCeEE
Confidence 111100 003457888888877755544 455443
No 445
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=89.06 E-value=7.4 Score=28.69 Aligned_cols=101 Identities=13% Similarity=0.111 Sum_probs=54.8
Q ss_pred eeEEEEcCCCCeEEEEe---------------CCCceeeec-ccCceeEEEEeeC-CeEEEecCCC-----------cEE
Q 038439 26 ICCVKYNPGSSNYIAKY---------------QSTAPCVHG-HKKAVSYVKFLSN-DELASASTDS-----------TLR 77 (179)
Q Consensus 26 v~~~~~~~~~~~~~~~~---------------~~~~~~~~~-~~~~i~~~~~~~~-~~l~~~~~d~-----------~v~ 77 (179)
+...+++|+++.++.+- .+++.+-.. .......+.|.++ ..|+....+. .|+
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~ 205 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVY 205 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEE
Confidence 34678999996554442 233333111 0111223899999 5554443222 377
Q ss_pred EEecCCCcce--eeecCCCCC--eEEEEEeeCCCEEEEecc---C-CcEEEEEcCCC
Q 038439 78 LWDVKENLPV--RTFRGHMNE--KNFVGLTVNSEYIACGSE---S-NEVYVYHKEIS 126 (179)
Q Consensus 78 iwd~~~~~~~--~~~~~~~~~--v~~~~~~~~~~~~~~~~~---d-~~v~vwd~~~~ 126 (179)
.|.+.+...- ..+...... ...+..++++++++.... + ..+.+.|+..+
T Consensus 206 ~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 206 RHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp EEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred EEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 7887765322 344433332 457888999999764322 3 45788888764
No 446
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=88.80 E-value=3.8 Score=25.07 Aligned_cols=64 Identities=11% Similarity=0.232 Sum_probs=38.9
Q ss_pred EEeeCCCEEEEeccCCcEEEEEcCCCcc--------ccccccCCCCCCCCcccCCcceEEEEE---Ecc--CCCeEEEEe
Q 038439 101 GLTVNSEYIACGSESNEVYVYHKEISKP--------VTWHRFSSPDMDDTDEDAGSYFISAVC---WKS--DSPTMLTAN 167 (179)
Q Consensus 101 ~~~~~~~~~~~~~~d~~v~vwd~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~--~~~~l~~~~ 167 (179)
.|.....-|+.++..|+|.|++...... +..+.+ ...|++++ |.| +...|+.|+
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNi-------------n~~italaaG~l~~~~~~D~LliGt 71 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNI-------------NQEITALAAGRLKPDDGRDCLLIGT 71 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEEC-------------CCceEEEEEEecCCCCCcCEEEEec
Confidence 3444444577788889999998875432 222332 34566665 432 345676666
Q ss_pred CCCcEEEEeec
Q 038439 168 SQGTIKVLVLA 178 (179)
Q Consensus 168 ~dg~i~iwd~~ 178 (179)
.. .+..||+.
T Consensus 72 ~t-~llaYDV~ 81 (136)
T PF14781_consen 72 QT-SLLAYDVE 81 (136)
T ss_pred cc-eEEEEEcc
Confidence 55 68888874
No 447
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=88.66 E-value=2.1 Score=34.14 Aligned_cols=40 Identities=0% Similarity=-0.046 Sum_probs=30.3
Q ss_pred CCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccc
Q 038439 94 MNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHR 133 (179)
Q Consensus 94 ~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~ 133 (179)
...+.++.-+|.|+-++.+..||.+.+|+...........
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~ 53 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICE 53 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhh
Confidence 3456778888999999999999999999976554433333
No 448
>PHA03098 kelch-like protein; Provisional
Probab=88.29 E-value=9.9 Score=29.19 Aligned_cols=62 Identities=16% Similarity=0.069 Sum_probs=31.7
Q ss_pred CeEEEecCC-----CcEEEEecCCCccee--eecCCCCCeEEEEEeeCCCEEEEeccC------CcEEEEEcCCCcc
Q 038439 65 DELASASTD-----STLRLWDVKENLPVR--TFRGHMNEKNFVGLTVNSEYIACGSES------NEVYVYHKEISKP 128 (179)
Q Consensus 65 ~~l~~~~~d-----~~v~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~d------~~v~vwd~~~~~~ 128 (179)
..++.|+.+ ..+..||..+.+-.. .+....... ++ ...++..++.|+.+ ..+..||+.+.+-
T Consensus 344 ~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~-~~-~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W 418 (534)
T PHA03098 344 RIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNP-CV-VNVNNLIYVIGGISKNDELLKTVECFSLNTNKW 418 (534)
T ss_pred EEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccc-eE-EEECCEEEEECCcCCCCcccceEEEEeCCCCee
Confidence 455566654 246678877653221 111111111 12 22356677777632 4578899877543
No 449
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=88.21 E-value=7 Score=27.37 Aligned_cols=54 Identities=15% Similarity=0.149 Sum_probs=38.2
Q ss_pred CcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEec------cCCcEEEEEcCCCc
Q 038439 74 STLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGS------ESNEVYVYHKEISK 127 (179)
Q Consensus 74 ~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~d~~v~vwd~~~~~ 127 (179)
..|++||....+-...-..-.+.|..+.|..+.+.++.|. ....+..||..+..
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~ 75 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT 75 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe
Confidence 4699999887654444444567899999986666666663 35568889987654
No 450
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=87.41 E-value=6.6 Score=26.20 Aligned_cols=39 Identities=10% Similarity=0.105 Sum_probs=29.7
Q ss_pred CccEEEEEcC--CceeEEeecCCCceeEEEEcCCCCeEEEE
Q 038439 3 YGKVKVWCTR--QEASVLNIDMKANICCVKYNPGSSNYIAK 41 (179)
Q Consensus 3 d~~i~vwd~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 41 (179)
-+.|.+|++. ..+.+..+..-+.|..+.++..|+++++.
T Consensus 37 g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTl 77 (215)
T PF14761_consen 37 GCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTL 77 (215)
T ss_pred CCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEE
Confidence 3578899987 34566677777899999999999666555
No 451
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=87.23 E-value=1.3 Score=20.47 Aligned_cols=21 Identities=14% Similarity=0.208 Sum_probs=16.4
Q ss_pred CCCeEEEEeCCCcEEEEeecC
Q 038439 159 DSPTMLTANSQGTIKVLVLAA 179 (179)
Q Consensus 159 ~~~~l~~~~~dg~i~iwd~~~ 179 (179)
.+..++.++.||.++.+|.++
T Consensus 20 ~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 20 AGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp CTSEEEEE-TTSEEEEEETT-
T ss_pred ECCEEEEEcCCCEEEEEeCCC
Confidence 466799999999999999864
No 452
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.22 E-value=12 Score=28.84 Aligned_cols=34 Identities=9% Similarity=0.046 Sum_probs=26.4
Q ss_pred CeEEEEEeeCC---CEEEEeccCCcEEEEEcCCCccc
Q 038439 96 EKNFVGLTVNS---EYIACGSESNEVYVYHKEISKPV 129 (179)
Q Consensus 96 ~v~~~~~~~~~---~~~~~~~~d~~v~vwd~~~~~~~ 129 (179)
.+..++|+|+. ..+..-..|+.+++||+.....+
T Consensus 167 tl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 167 TLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred eeeeccccCCccCCceEEEEecCcEEEEEecCCcchh
Confidence 45678899974 56777888999999998765544
No 453
>KOG2109 consensus WD40 repeat protein [General function prediction only]
Probab=86.59 E-value=0.47 Score=36.61 Aligned_cols=95 Identities=14% Similarity=0.170 Sum_probs=56.5
Q ss_pred EEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEE
Q 038439 76 LRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVC 155 (179)
Q Consensus 76 v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 155 (179)
+.+=|+.+...+.+++.|..++..++|.+.+..+++++-.|. .|.+.+..+.+.......+...-....-....+-.++
T Consensus 297 vivkdf~S~a~i~QfkAhkspiSaLcfdqsgsllViasi~g~-nVnvfRimet~~t~~~~~qs~~~s~ra~t~aviqdic 375 (788)
T KOG2109|consen 297 VIVKDFDSFADIRQFKAHKSPISALCFDQSGSLLVIASITGR-NVNVFRIMETVCTVNVSDQSLVVSPRANTAAVIQDIC 375 (788)
T ss_pred EEeecccchhhhhheeeecCcccccccccCceEEEEEeeccc-eeeeEEeccccccccccccccccchhcchHHHHHHHh
Confidence 445567777778889999999999999999999888877653 3444443333322222111100000000023344577
Q ss_pred EccCCCeEEEEeCCCc
Q 038439 156 WKSDSPTMLTANSQGT 171 (179)
Q Consensus 156 ~~~~~~~l~~~~~dg~ 171 (179)
|+...+++..++-+|.
T Consensus 376 fs~~s~~r~~gsc~Ge 391 (788)
T KOG2109|consen 376 FSEVSTIRTAGSCEGE 391 (788)
T ss_pred hhhhcceEeecccCCC
Confidence 8777777777776653
No 454
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=86.51 E-value=9.7 Score=27.18 Aligned_cols=89 Identities=13% Similarity=0.040 Sum_probs=57.9
Q ss_pred EEeeCCeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccC--------------------CcEE
Q 038439 60 KFLSNDELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSES--------------------NEVY 119 (179)
Q Consensus 60 ~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d--------------------~~v~ 119 (179)
+|..+.+.++-+..+.+.-+|..+++...... -.+..+.++|. |.++++|.+. .-|.
T Consensus 209 RWhdgrLwvldsgtGev~~vD~~~G~~e~Va~-vpG~~rGL~f~--G~llvVgmSk~R~~~~f~glpl~~~l~~~~CGv~ 285 (335)
T TIGR03032 209 RWYQGKLWLLNSGRGELGYVDPQAGKFQPVAF-LPGFTRGLAFA--GDFAFVGLSKLRESRVFGGLPIEERLDALGCGVA 285 (335)
T ss_pred cEeCCeEEEEECCCCEEEEEcCCCCcEEEEEE-CCCCCccccee--CCEEEEEeccccCCCCcCCCchhhhhhhhcccEE
Confidence 34433566777778888888877664333222 23456677776 7777665321 2367
Q ss_pred EEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCC
Q 038439 120 VYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSP 161 (179)
Q Consensus 120 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 161 (179)
+.|++++..+..+++... -..+..++.-|.-+
T Consensus 286 vidl~tG~vv~~l~feg~----------v~EifdV~vLPg~r 317 (335)
T TIGR03032 286 VIDLNSGDVVHWLRFEGV----------IEEIYDVAVLPGVR 317 (335)
T ss_pred EEECCCCCEEEEEEeCCc----------eeEEEEEEEecCCC
Confidence 889999988887777544 45678888877643
No 455
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=86.50 E-value=1.7 Score=18.37 Aligned_cols=25 Identities=16% Similarity=0.236 Sum_probs=19.5
Q ss_pred EEEEEEccCCCeEEEEeCCCcEEEE
Q 038439 151 ISAVCWKSDSPTMLTANSQGTIKVL 175 (179)
Q Consensus 151 i~~~~~~~~~~~l~~~~~dg~i~iw 175 (179)
...++..++|+.+++=+....|.+|
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEEC
Confidence 5678888888888887777777765
No 456
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=86.33 E-value=9.6 Score=26.97 Aligned_cols=109 Identities=12% Similarity=0.052 Sum_probs=63.0
Q ss_pred ceeEEEEeeCCeEEEecCCCcEEEEecCCCcceeeecC--CCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccc-
Q 038439 55 AVSYVKFLSNDELASASTDSTLRLWDVKENLPVRTFRG--HMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTW- 131 (179)
Q Consensus 55 ~i~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~- 131 (179)
.+..++++. ++...+..+.-++|.|+.+...-..+.. -.+-.++ |.-.|++.+++..|.-+.+.|+.+....+.
T Consensus 88 l~~Dv~vse-~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyayg--v~vsGn~aYVadlddgfLivdvsdpssP~la 164 (370)
T COG5276 88 LFADVRVSE-EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYG--VYVSGNYAYVADLDDGFLIVDVSDPSSPQLA 164 (370)
T ss_pred hhheeEecc-cEEEEEcCCCceEEEeccCCCCcceeccccCCceEEE--EEecCCEEEEeeccCcEEEEECCCCCCceee
Confidence 344555554 4556666777899999987543322211 1122333 344688888888666677899887543322
Q ss_pred cccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439 132 HRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
-+...+ ...-+.++. +|++-+.+..|+-+.+-|+.
T Consensus 165 grya~~----------~~d~~~v~I--SGn~AYvA~~d~GL~ivDVS 199 (370)
T COG5276 165 GRYALP----------GGDTHDVAI--SGNYAYVAWRDGGLTIVDVS 199 (370)
T ss_pred eeeccC----------CCCceeEEE--ecCeEEEEEeCCCeEEEEcc
Confidence 121111 222344555 36667777777778887764
No 457
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=85.87 E-value=17 Score=29.51 Aligned_cols=105 Identities=15% Similarity=0.120 Sum_probs=57.6
Q ss_pred CCcEEEEecCCCcceeeecCC---------CC--------Ce-EEEEEeeCCCEEEEec------------------cCC
Q 038439 73 DSTLRLWDVKENLPVRTFRGH---------MN--------EK-NFVGLTVNSEYIACGS------------------ESN 116 (179)
Q Consensus 73 d~~v~iwd~~~~~~~~~~~~~---------~~--------~v-~~~~~~~~~~~~~~~~------------------~d~ 116 (179)
+|.|+-+|.++++.+-.+... .+ .+ ..+++.++...++.+. ..+
T Consensus 335 ~G~I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~ 414 (764)
T TIGR03074 335 SGVIRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSS 414 (764)
T ss_pred CcEEEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccc
Confidence 588999999999887665421 00 11 1234555444433321 134
Q ss_pred cEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCC---eEEEEeCCCcEEEEeecC
Q 038439 117 EVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSP---TMLTANSQGTIKVLVLAA 179 (179)
Q Consensus 117 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~l~~~~~dg~i~iwd~~~ 179 (179)
.|.-.|.++++..-.++...++.-.-.... ...+..+. ..+|+ .++.++.+|.+.++|-++
T Consensus 415 slvALD~~TGk~~W~~Q~~~hD~WD~D~~~-~p~L~d~~-~~~G~~~~~v~~~~K~G~~~vlDr~t 478 (764)
T TIGR03074 415 SLVALDATTGKERWVFQTVHHDLWDMDVPA-QPSLVDLP-DADGTTVPALVAPTKQGQIYVLDRRT 478 (764)
T ss_pred eEEEEeCCCCceEEEecccCCccccccccC-CceEEeee-cCCCcEeeEEEEECCCCEEEEEECCC
Confidence 567778888887766554333222111111 11122222 12553 788899999999998654
No 458
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=85.36 E-value=13 Score=27.62 Aligned_cols=30 Identities=27% Similarity=0.249 Sum_probs=24.9
Q ss_pred ceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439 149 YFISAVCWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 149 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
..|.+++..+..+.+++.+.+|.|.+|++.
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~ 219 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLG 219 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEe
Confidence 349999999988999999999999999985
No 459
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=85.01 E-value=15 Score=27.98 Aligned_cols=115 Identities=13% Similarity=0.062 Sum_probs=52.7
Q ss_pred EEEeeCCeEEEecCCCcEEEEecCCCcceeeecCCCCC---eEEEEEeeCCCEEEEecc-------------CCcEEEEE
Q 038439 59 VKFLSNDELASASTDSTLRLWDVKENLPVRTFRGHMNE---KNFVGLTVNSEYIACGSE-------------SNEVYVYH 122 (179)
Q Consensus 59 ~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~---v~~~~~~~~~~~~~~~~~-------------d~~v~vwd 122 (179)
+...+++.|+.++. ..++.+|+. |+.+..+...... -..+...|+|++|+.+.. ...|..+|
T Consensus 153 ~~~l~nG~ll~~~~-~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd 230 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG-NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD 230 (477)
T ss_dssp EEE-TTS-EEEEEB-TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE-
T ss_pred eeEcCCCCEEEecC-CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC
Confidence 44556645555444 778888875 5555555433221 245667788988877661 12355666
Q ss_pred cCCCccccccccCCCCCCCC---------------cccCCcceEEEEEEcc-CCCeEEEEeCCCcEEEEe
Q 038439 123 KEISKPVTWHRFSSPDMDDT---------------DEDAGSYFISAVCWKS-DSPTMLTANSQGTIKVLV 176 (179)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd 176 (179)
.+|+.+..+.+..+..... .....=..++++.+.+ ++.+++++-.-..|...|
T Consensus 231 -~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id 299 (477)
T PF05935_consen 231 -PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKID 299 (477)
T ss_dssp -TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE
T ss_pred -CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEE
Confidence 6676665554443321000 0010013488899988 444444444344565555
No 460
>PRK13684 Ycf48-like protein; Provisional
Probab=84.95 E-value=12 Score=26.90 Aligned_cols=139 Identities=9% Similarity=0.023 Sum_probs=74.4
Q ss_pred CceeEEEEcCCCCeEEEEeCCCcee-------------eecccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCcceee
Q 038439 24 ANICCVKYNPGSSNYIAKYQSTAPC-------------VHGHKKAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRT 89 (179)
Q Consensus 24 ~~v~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~ 89 (179)
..+..+.+.|++ .+++++..+..+ ...-...++++.+.++ ..++. +..|.+++=....++.-..
T Consensus 173 g~~~~i~~~~~g-~~v~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~v-g~~G~~~~~s~d~G~sW~~ 250 (334)
T PRK13684 173 GVVRNLRRSPDG-KYVAVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWML-ARGGQIRFNDPDDLESWSK 250 (334)
T ss_pred ceEEEEEECCCC-eEEEEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEE-ecCCEEEEccCCCCCcccc
Confidence 457889999987 566665222221 1122356788888888 55444 4567665322333332221
Q ss_pred ecC----CCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEE
Q 038439 90 FRG----HMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLT 165 (179)
Q Consensus 90 ~~~----~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 165 (179)
... ....+..+.+.|+++.+++ +.+|.+. .....++.-......... ....+.+.|..+++.+ .
T Consensus 251 ~~~~~~~~~~~l~~v~~~~~~~~~~~-G~~G~v~-~S~d~G~tW~~~~~~~~~---------~~~~~~~~~~~~~~~~-~ 318 (334)
T PRK13684 251 PIIPEITNGYGYLDLAYRTPGEIWAG-GGNGTLL-VSKDGGKTWEKDPVGEEV---------PSNFYKIVFLDPEKGF-V 318 (334)
T ss_pred ccCCccccccceeeEEEcCCCCEEEE-cCCCeEE-EeCCCCCCCeECCcCCCC---------CcceEEEEEeCCCceE-E
Confidence 111 1234677888888776555 4567554 333434433222110000 2357777777665554 4
Q ss_pred EeCCCcEEEEe
Q 038439 166 ANSQGTIKVLV 176 (179)
Q Consensus 166 ~~~dg~i~iwd 176 (179)
.+..|.|--|+
T Consensus 319 ~G~~G~il~~~ 329 (334)
T PRK13684 319 LGQRGVLLRYV 329 (334)
T ss_pred ECCCceEEEec
Confidence 56677776654
No 461
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=84.89 E-value=7.4 Score=31.45 Aligned_cols=77 Identities=6% Similarity=-0.062 Sum_probs=50.9
Q ss_pred CCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCcccccc----ccCCC-----CCCCCcccCCcceEEEEEEccCCCeEEE
Q 038439 95 NEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWH----RFSSP-----DMDDTDEDAGSYFISAVCWKSDSPTMLT 165 (179)
Q Consensus 95 ~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~----~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 165 (179)
..|.++....-+.+++....||.|.++|..+.+.+... ..... .....+.. ...+..++|||++-.++.
T Consensus 260 ~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~--~~~~~~vafSPt~c~~v~ 337 (753)
T PF11635_consen 260 KRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPC--IQPPLHVAFSPTMCSLVQ 337 (753)
T ss_pred CeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCcccccccccccccccc--CCCCceEEECcccceEEE
Confidence 34556666556778899999999999999988766544 11110 01111111 124556899999999999
Q ss_pred EeCCCcEE
Q 038439 166 ANSQGTIK 173 (179)
Q Consensus 166 ~~~dg~i~ 173 (179)
-..+|.+.
T Consensus 338 ~~~~~~~~ 345 (753)
T PF11635_consen 338 IDEDGKTK 345 (753)
T ss_pred EecCCCce
Confidence 88888855
No 462
>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]
Probab=84.68 E-value=21 Score=29.49 Aligned_cols=71 Identities=7% Similarity=0.025 Sum_probs=41.0
Q ss_pred CceeEEEEeeC-CeEEEecCCCcEEEEecCCC--------c-------------cee---eecCCCCCeEEEEEeeCCCE
Q 038439 54 KAVSYVKFLSN-DELASASTDSTLRLWDVKEN--------L-------------PVR---TFRGHMNEKNFVGLTVNSEY 108 (179)
Q Consensus 54 ~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~--------~-------------~~~---~~~~~~~~v~~~~~~~~~~~ 108 (179)
-.|.|+.-..+ +.+++|-.| +.+|.+.-. + .+- .+..+...|..++.......
T Consensus 182 inV~civs~e~GrIFf~g~~d--~nvyEl~Y~~sd~wfnskcskiclTkS~l~sllPs~~~~~ipgetI~Ql~vDqsRg~ 259 (1263)
T COG5308 182 INVRCIVSEEDGRIFFGGEND--PNVYELVYKSSDSWFNSKCSKICLTKSILSSLLPSFFSFGIPGETIKQLAVDQSRGL 259 (1263)
T ss_pred ceeEEEEeccCCcEEEecCCC--CCeEEEEEeccchhhhhhhhccCCcHHHHHhhcccccccCCcccchhheeecccccc
Confidence 35667766666 555555555 667765310 0 010 11124456667777666666
Q ss_pred EEEeccCCcEEEEEcCCC
Q 038439 109 IACGSESNEVYVYHKEIS 126 (179)
Q Consensus 109 ~~~~~~d~~v~vwd~~~~ 126 (179)
+.+-.....|+.|.+...
T Consensus 260 ly~Lr~kS~Vray~itkn 277 (1263)
T COG5308 260 LYVLRKKSAVRAYSITKN 277 (1263)
T ss_pred eeeecccceeeeEeeecc
Confidence 777777778888876543
No 463
>PHA02790 Kelch-like protein; Provisional
Probab=84.63 E-value=16 Score=27.87 Aligned_cols=61 Identities=7% Similarity=-0.122 Sum_probs=31.9
Q ss_pred CeEEEecCCC-----cEEEEecCCCccee--eecCCCCCeEEEEEeeCCCEEEEeccC--CcEEEEEcCCCc
Q 038439 65 DELASASTDS-----TLRLWDVKENLPVR--TFRGHMNEKNFVGLTVNSEYIACGSES--NEVYVYHKEISK 127 (179)
Q Consensus 65 ~~l~~~~~d~-----~v~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~d--~~v~vwd~~~~~ 127 (179)
..++.|+.++ .+..||..+.+... .+....... ++ ..-++..++.|+.+ ..+..||..+++
T Consensus 273 ~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~-v~~~~~iYviGG~~~~~sve~ydp~~n~ 342 (480)
T PHA02790 273 VVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SG-VPANNKLYVVGGLPNPTSVERWFHGDAA 342 (480)
T ss_pred EEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eE-EEECCEEEEECCcCCCCceEEEECCCCe
Confidence 4456665432 46678877654222 121111111 12 23467777888764 357788876553
No 464
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=84.36 E-value=13 Score=26.66 Aligned_cols=106 Identities=12% Similarity=0.158 Sum_probs=58.4
Q ss_pred eEEEEeeC-CeEEEecCC------CcEEEEecCCCcceeeec---------------CCCCCeEEEEEeeCCCEEEEecc
Q 038439 57 SYVKFLSN-DELASASTD------STLRLWDVKENLPVRTFR---------------GHMNEKNFVGLTVNSEYIACGSE 114 (179)
Q Consensus 57 ~~~~~~~~-~~l~~~~~d------~~v~iwd~~~~~~~~~~~---------------~~~~~v~~~~~~~~~~~~~~~~~ 114 (179)
-+|++.++ .++++.-.+ ..|..++.. ++.+..+. ........++++|+|+.|+++.+
T Consensus 88 Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E 166 (326)
T PF13449_consen 88 EGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME 166 (326)
T ss_pred hHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence 36777555 555555556 678888866 54433331 12446788999999996665533
Q ss_pred -----CC--c-------EEE--EEcCC-CccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEE
Q 038439 115 -----SN--E-------VYV--YHKEI-SKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTA 166 (179)
Q Consensus 115 -----d~--~-------v~v--wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 166 (179)
|+ . +++ ||..+ ++....+.+......... ....+..+.+-+++++|+.-
T Consensus 167 ~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~---~~~~isd~~al~d~~lLvLE 232 (326)
T PF13449_consen 167 SPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAP---GDNGISDIAALPDGRLLVLE 232 (326)
T ss_pred ccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCcccccc---CCCCceeEEEECCCcEEEEE
Confidence 22 1 344 45444 323333222111000000 15678889999999877653
No 465
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=84.35 E-value=5.1 Score=28.30 Aligned_cols=36 Identities=14% Similarity=0.196 Sum_probs=30.0
Q ss_pred eEEEEEeeCCCEEEEeccCCcEEEEEcCCCcccccc
Q 038439 97 KNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWH 132 (179)
Q Consensus 97 v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~ 132 (179)
++++...++|.+|++.-.-..|.+.|.++++.+..+
T Consensus 146 iNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~l 181 (299)
T PF14269_consen 146 INSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRL 181 (299)
T ss_pred eeeeeecCCccEEEEecccCEEEEEECCCCcEEEEe
Confidence 567777888999999988899999999988876554
No 466
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=84.20 E-value=17 Score=28.06 Aligned_cols=104 Identities=14% Similarity=0.025 Sum_probs=60.9
Q ss_pred CCcEEEEecCCCcceeeecCCCC-------------------------------CeE-EEEEeeCCCEEEEeccC-----
Q 038439 73 DSTLRLWDVKENLPVRTFRGHMN-------------------------------EKN-FVGLTVNSEYIACGSES----- 115 (179)
Q Consensus 73 d~~v~iwd~~~~~~~~~~~~~~~-------------------------------~v~-~~~~~~~~~~~~~~~~d----- 115 (179)
++.|.-+|.++++.+-.+..-.. .++ .+++.|+..+++.+...
T Consensus 180 ~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~ 259 (527)
T TIGR03075 180 RGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWN 259 (527)
T ss_pred CcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCC
Confidence 68899999999887655432111 111 23566655566555421
Q ss_pred C-----------cEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCC---eEEEEeCCCcEEEEeecC
Q 038439 116 N-----------EVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSP---TMLTANSQGTIKVLVLAA 179 (179)
Q Consensus 116 ~-----------~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~l~~~~~dg~i~iwd~~~ 179 (179)
+ .|.-.|+++++..-.++...++.-..... ....=+....+|+ .++.+..+|.+++.|-++
T Consensus 260 ~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~---~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~t 334 (527)
T TIGR03075 260 SHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGV---NEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTN 334 (527)
T ss_pred CCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCC---CCcEEEEeccCCcEEEEEEEeCCCceEEEEECCC
Confidence 1 57778899998876666544433221111 1111122334665 777899999999988653
No 467
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=83.85 E-value=14 Score=26.83 Aligned_cols=70 Identities=11% Similarity=0.041 Sum_probs=45.9
Q ss_pred CeEEEecCCCcEEEEecCCCcceeeecCCC--CCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccC
Q 038439 65 DELASASTDSTLRLWDVKENLPVRTFRGHM--NEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFS 135 (179)
Q Consensus 65 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~ 135 (179)
+.++.+..+|.+.-.|..+++.+....... ..+..-.+..+|+ ++.++.++.++.+|.++++.+......
T Consensus 69 g~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~ 140 (370)
T COG1520 69 GTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVG 140 (370)
T ss_pred CeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecC
Confidence 677777888888888888877554332211 1122222223666 777888898999999888887666553
No 468
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=83.69 E-value=7.2 Score=26.87 Aligned_cols=73 Identities=12% Similarity=0.177 Sum_probs=45.5
Q ss_pred CCCeEEEEEee------C-CCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEE
Q 038439 94 MNEKNFVGLTV------N-SEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTA 166 (179)
Q Consensus 94 ~~~v~~~~~~~------~-~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 166 (179)
...|+|++--. + -..++.|.++|.|.+.|.+....+....+.... ..-...-.|..-.-.++++
T Consensus 176 ~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lpsvP---------v~i~~~G~~devdyRI~Va 246 (257)
T PF14779_consen 176 QTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLPSVP---------VFISVSGQYDEVDYRIVVA 246 (257)
T ss_pred CceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecCCCc---------eEEEEEeeeeccceEEEEE
Confidence 34567765432 1 235889999999999999988777776664321 1111222343123347788
Q ss_pred eCCCcEEEE
Q 038439 167 NSQGTIKVL 175 (179)
Q Consensus 167 ~~dg~i~iw 175 (179)
+.||.|++.
T Consensus 247 ~Rdg~iy~i 255 (257)
T PF14779_consen 247 CRDGKIYTI 255 (257)
T ss_pred eCCCEEEEE
Confidence 889988763
No 469
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=83.53 E-value=14 Score=26.36 Aligned_cols=76 Identities=9% Similarity=0.101 Sum_probs=47.1
Q ss_pred CeEEEEEeeCCCEEEEeccCCcEEEEEcCC------CccccccccCCCCCCCCcccCCcceEEEEEEccCCC--------
Q 038439 96 EKNFVGLTVNSEYIACGSESNEVYVYHKEI------SKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSP-------- 161 (179)
Q Consensus 96 ~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-------- 161 (179)
..+.++++|.+.+.++....+...+||... .+++. .....+.. .......+.+.|+....
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~-vtiP~~~~-----~~~~~~PTGiVfN~~~~F~vt~~g~ 97 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLV-VVIPAPPP-----LAAEGTPTGQVFNGSDTFVVSGEGI 97 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceE-EEecCCCC-----CCCCCCccEEEEeCCCceEEcCCCc
Confidence 357899999998888888889999999861 21111 11111000 00023456666654322
Q ss_pred ----eEEEEeCCCcEEEEee
Q 038439 162 ----TMLTANSQGTIKVLVL 177 (179)
Q Consensus 162 ----~l~~~~~dg~i~iwd~ 177 (179)
.++.+++||+|.-|..
T Consensus 98 ~~~a~Fif~tEdGTisaW~p 117 (336)
T TIGR03118 98 TGPSRFLFVTEDGTLSGWAP 117 (336)
T ss_pred ccceeEEEEeCCceEEeecC
Confidence 2677889999999973
No 470
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=83.34 E-value=11 Score=25.36 Aligned_cols=71 Identities=13% Similarity=0.105 Sum_probs=41.1
Q ss_pred CeEEEecC--CCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEE-EeccCCcEEEEEcCCCccccccccC
Q 038439 65 DELASAST--DSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIA-CGSESNEVYVYHKEISKPVTWHRFS 135 (179)
Q Consensus 65 ~~l~~~~~--d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~d~~v~vwd~~~~~~~~~~~~~ 135 (179)
.++.+.+. ...|++||+.+++.+.+-+-....+..--...-+.++. -.-.++.-..+|.++.+.+..+...
T Consensus 57 ~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~ 130 (262)
T COG3823 57 HILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYE 130 (262)
T ss_pred EEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccC
Confidence 34455544 34799999998877655443211222111111244433 3345788888999988887776653
No 471
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.30 E-value=29 Score=29.87 Aligned_cols=31 Identities=10% Similarity=0.164 Sum_probs=28.5
Q ss_pred cceEEEEEEccCCCeEEEEeCCCcEEEEeec
Q 038439 148 SYFISAVCWKSDSPTMLTANSQGTIKVLVLA 178 (179)
Q Consensus 148 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 178 (179)
..+|..+....+.+.+++-+..|.|.+||+.
T Consensus 242 ~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~ 272 (1311)
T KOG1900|consen 242 KDPIRQITIDNSRNILYVLSEKGTVSAYDIG 272 (1311)
T ss_pred CCcceeeEeccccceeeeeccCceEEEEEcc
Confidence 6789999999989999999999999999985
No 472
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=83.21 E-value=16 Score=30.09 Aligned_cols=52 Identities=13% Similarity=0.114 Sum_probs=36.1
Q ss_pred CcEEEEecCCCcceee-ecCCCCCeEEEEEeeCCCEEEE-eccCC-----cEEEEEcCCC
Q 038439 74 STLRLWDVKENLPVRT-FRGHMNEKNFVGLTVNSEYIAC-GSESN-----EVYVYHKEIS 126 (179)
Q Consensus 74 ~~v~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~-~~~d~-----~v~vwd~~~~ 126 (179)
+.+.+-|.....+... + .+...+.+-+|+|||++|+- .+.++ .|++-|+++.
T Consensus 329 ~~L~~~D~dG~n~~~ve~-~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~ 387 (912)
T TIGR02171 329 GNLAYIDYTKGASRAVEI-EDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNAS 387 (912)
T ss_pred CeEEEEecCCCCceEEEe-cCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhcc
Confidence 4777777765544432 3 35777888999999999876 33333 4888888874
No 473
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=82.85 E-value=20 Score=27.66 Aligned_cols=60 Identities=15% Similarity=0.135 Sum_probs=42.5
Q ss_pred CCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeCCCcEEEEee
Q 038439 105 NSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVL 177 (179)
Q Consensus 105 ~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 177 (179)
..-++++++..|-|++||.-..+....++.- +..|-.+....+|.++++.+.. ++.+-|+
T Consensus 572 esGyIa~as~kGDirLyDRig~rAKtalP~l------------G~aIk~idvta~Gk~ilaTCk~-yllL~d~ 631 (776)
T COG5167 572 ESGYIAAASRKGDIRLYDRIGKRAKTALPGL------------GDAIKHIDVTANGKHILATCKN-YLLLTDV 631 (776)
T ss_pred cCceEEEecCCCceeeehhhcchhhhcCccc------------ccceeeeEeecCCcEEEEeecc-eEEEEec
Confidence 3558999999999999997543333222211 5678889999999998887754 5655554
No 474
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=82.74 E-value=13 Score=26.40 Aligned_cols=58 Identities=10% Similarity=0.136 Sum_probs=37.9
Q ss_pred CCEEEEeccCCcEEEEEcCC--CccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEe-CCCcEEEEeec
Q 038439 106 SEYIACGSESNEVYVYHKEI--SKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTAN-SQGTIKVLVLA 178 (179)
Q Consensus 106 ~~~~~~~~~d~~v~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~ 178 (179)
+++++.|+++|. .+.++.. .+...... ...|.++...+..+.|++-+ ....++.+++.
T Consensus 13 ~~~lL~GTe~Gl-y~~~~~~~~~~~~kl~~--------------~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~ 73 (302)
T smart00036 13 GKWLLVGTEEGL-YVLNISDQPGTLEKLIG--------------RRSVTQIWVLEENNVLLMISGKKPQLYSHPLS 73 (302)
T ss_pred CcEEEEEeCCce-EEEEcccCCCCeEEecC--------------cCceEEEEEEhhhCEEEEEeCCcceEEEEEHH
Confidence 368999999885 4555543 22332222 55799999988777666654 34459999874
No 475
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=82.70 E-value=19 Score=27.31 Aligned_cols=55 Identities=7% Similarity=-0.091 Sum_probs=33.0
Q ss_pred ccCceeEEEEeeC-CeEEEecCCCcEEEEecCCCc--ceeeec-----CCCCCeEEEEEeeCC
Q 038439 52 HKKAVSYVKFLSN-DELASASTDSTLRLWDVKENL--PVRTFR-----GHMNEKNFVGLTVNS 106 (179)
Q Consensus 52 ~~~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~--~~~~~~-----~~~~~v~~~~~~~~~ 106 (179)
.-..-+.|+|.|+ ..|++--..|.|++++...+. .+..+. ........|+++|+-
T Consensus 28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 3345578889999 555444436888888765432 121111 124567789999873
No 476
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=82.59 E-value=6.6 Score=22.01 Aligned_cols=29 Identities=21% Similarity=0.274 Sum_probs=23.4
Q ss_pred eEEEEEEccCCCeEEEEeC-CCcEEEEeec
Q 038439 150 FISAVCWKSDSPTMLTANS-QGTIKVLVLA 178 (179)
Q Consensus 150 ~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~ 178 (179)
..+.+.++|++++|+.++. .+.|++|..+
T Consensus 55 ~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 55 FANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred CCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 4577889999998877666 6889999865
No 477
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=82.47 E-value=6.6 Score=21.99 Aligned_cols=49 Identities=18% Similarity=0.331 Sum_probs=31.5
Q ss_pred CcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEec-cCCcEEEEEcCC
Q 038439 74 STLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGS-ESNEVYVYHKEI 125 (179)
Q Consensus 74 ~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~d~~v~vwd~~~ 125 (179)
+.|.-||..+ .+.....-.....+.++|++++|++++ ..+.|++|..+.
T Consensus 36 ~~Vvyyd~~~---~~~va~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 36 GNVVYYDGKE---VKVVASGFSFANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred ceEEEEeCCE---eEEeeccCCCCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 4555666432 223333334567899999999877665 468899998753
No 478
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=81.64 E-value=16 Score=25.88 Aligned_cols=68 Identities=13% Similarity=0.200 Sum_probs=44.8
Q ss_pred eeEEEEeeC-CeEEEecCCCcEEEEecCCCcceeeecCCCCCe-----EEEEEeeCCCEEEEeccCCcEEEEEc
Q 038439 56 VSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRGHMNEK-----NFVGLTVNSEYIACGSESNEVYVYHK 123 (179)
Q Consensus 56 i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~~~~~~~d~~v~vwd~ 123 (179)
|+++...++ .+|+++-.-..|.+.|.++++.+..+.+....- ...++-.+.+++-.+..++.|.++|=
T Consensus 146 iNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN 219 (299)
T PF14269_consen 146 INSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDN 219 (299)
T ss_pred eeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcC
Confidence 566666666 888888888899999988988887776542211 11334344555545556677777775
No 479
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=81.50 E-value=6 Score=31.78 Aligned_cols=67 Identities=7% Similarity=0.153 Sum_probs=43.4
Q ss_pred CceeEEEEeeC-CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEc
Q 038439 54 KAVSYVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHK 123 (179)
Q Consensus 54 ~~i~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~ 123 (179)
..++++.-+|. ..++.++.|+.+++|++...+.-.... ...+-..+.|..+| +++...|+.+.-|.-
T Consensus 15 e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~-~~~p~~nlv~tnhg--l~~~tsdrr~la~~~ 82 (1636)
T KOG3616|consen 15 EFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICE-EAKPKENLVFTNHG--LVTATSDRRALAWKE 82 (1636)
T ss_pred ceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhh-hcCCccceeeeccc--eEEEeccchhheeec
Confidence 44567777788 889999999999999987654422222 12233445565555 555666777766753
No 480
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=81.08 E-value=17 Score=25.87 Aligned_cols=115 Identities=9% Similarity=-0.011 Sum_probs=63.8
Q ss_pred ceeEEEEeeC-CeEEEecCCCcEEEEecC------CC-cceeeecC-----CCCCeEEEEEeeCCC------------EE
Q 038439 55 AVSYVKFLSN-DELASASTDSTLRLWDVK------EN-LPVRTFRG-----HMNEKNFVGLTVNSE------------YI 109 (179)
Q Consensus 55 ~i~~~~~~~~-~~l~~~~~d~~v~iwd~~------~~-~~~~~~~~-----~~~~v~~~~~~~~~~------------~~ 109 (179)
.-+.|+++|. ...++....+...+||.. .. .++-++.. .....+.+.|+.... .+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 3467888888 677777777888899886 11 12222221 123456666653222 25
Q ss_pred EEeccCCcEEEEEcCCCcc---ccccccCCCCCCCCcccCCcceEEEEEEcc--CCCeEEEEe-CCCcEEEEee
Q 038439 110 ACGSESNEVYVYHKEISKP---VTWHRFSSPDMDDTDEDAGSYFISAVCWKS--DSPTMLTAN-SQGTIKVLVL 177 (179)
Q Consensus 110 ~~~~~d~~v~vwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~-~dg~i~iwd~ 177 (179)
+.+++||+|.-|...-... .......... ....-..+++.. .+.+|+.+. ..++|.|||-
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~--------~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~ 169 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQ--------QGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKG 169 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCC--------CcceeeeeEEeecCCCceEEEeccCCCceEEecC
Confidence 6778999999998643322 1111111000 022233455543 356666554 4788999874
No 481
>PHA02790 Kelch-like protein; Provisional
Probab=80.85 E-value=23 Score=27.03 Aligned_cols=97 Identities=10% Similarity=-0.062 Sum_probs=46.1
Q ss_pred CeEEEecCCC---cEEEEecCCCccee--eecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCC
Q 038439 65 DELASASTDS---TLRLWDVKENLPVR--TFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDM 139 (179)
Q Consensus 65 ~~l~~~~~d~---~v~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~ 139 (179)
...+.|+.++ .+..||.++.+-.. .+...... ......++..++.|+ .+.+||.++.+-........+
T Consensus 364 ~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~--~~~~~~~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~-- 436 (480)
T PHA02790 364 VIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYK--SCALVFGRRLFLVGR---NAEFYCESSNTWTLIDDPIYP-- 436 (480)
T ss_pred EEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcccc--ceEEEECCEEEEECC---ceEEecCCCCcEeEcCCCCCC--
Confidence 4445555443 46678876543221 11111111 112234566666664 477899876543322111110
Q ss_pred CCCcccCCcceEEEEEEccCCCeEEEEeCC-----CcEEEEeec
Q 038439 140 DDTDEDAGSYFISAVCWKSDSPTMLTANSQ-----GTIKVLVLA 178 (179)
Q Consensus 140 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~iwd~~ 178 (179)
......+. -+++..+.|+.+ ..+..||.+
T Consensus 437 --------r~~~~~~v--~~~~IYviGG~~~~~~~~~ve~Yd~~ 470 (480)
T PHA02790 437 --------RDNPELII--VDNKLLLIGGFYRGSYIDTIEVYNNR 470 (480)
T ss_pred --------ccccEEEE--ECCEEEEECCcCCCcccceEEEEECC
Confidence 11111122 266777777754 357788865
No 482
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=79.77 E-value=17 Score=25.09 Aligned_cols=67 Identities=7% Similarity=0.182 Sum_probs=44.1
Q ss_pred CceeEEEEee------C--CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEee--C-CC-EEEEeccCCcEEEE
Q 038439 54 KAVSYVKFLS------N--DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTV--N-SE-YIACGSESNEVYVY 121 (179)
Q Consensus 54 ~~i~~~~~~~------~--~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~--~-~~-~~~~~~~d~~v~vw 121 (179)
..|+|+.--. + ..++.|.+++.|.|.|.+....+.++.-..-++ .+..+- | .. .|++++.||.|++.
T Consensus 177 t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lpsvPv-~i~~~G~~devdyRI~Va~Rdg~iy~i 255 (257)
T PF14779_consen 177 TVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLPSVPV-FISVSGQYDEVDYRIVVACRDGKIYTI 255 (257)
T ss_pred ceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecCCCce-EEEEEeeeeccceEEEEEeCCCEEEEE
Confidence 4577776432 2 679999999999999998877777776544333 222211 2 22 36777888987754
No 483
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=79.09 E-value=18 Score=24.82 Aligned_cols=39 Identities=5% Similarity=-0.070 Sum_probs=33.6
Q ss_pred CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEe
Q 038439 65 DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLT 103 (179)
Q Consensus 65 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~ 103 (179)
.++++.-..++|...|..+++.+.+++-....+++++|-
T Consensus 224 ~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFg 262 (310)
T KOG4499|consen 224 NLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFG 262 (310)
T ss_pred cEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEec
Confidence 556666677899999999999999999888999999985
No 484
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=77.36 E-value=4.6 Score=17.09 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=19.1
Q ss_pred eEEEEEEccCCCeEEEEeCCCcEEEEe
Q 038439 150 FISAVCWKSDSPTMLTANSQGTIKVLV 176 (179)
Q Consensus 150 ~i~~~~~~~~~~~l~~~~~dg~i~iwd 176 (179)
.|.+++.. ..++++++..+.+++|.
T Consensus 3 ~i~aia~g--~~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 3 EIEAIAAG--DSWVAVATSAGYLRIFS 27 (27)
T ss_pred eEEEEEcc--CCEEEEEeCCCeEEecC
Confidence 46666664 46889999999999984
No 485
>KOG3611 consensus Semaphorins [Signal transduction mechanisms]
Probab=76.73 E-value=39 Score=27.47 Aligned_cols=71 Identities=11% Similarity=0.148 Sum_probs=43.9
Q ss_pred CCCeEEEEEe----eCCCE--EEEeccCCcEE-EEEcCCCc-----cccccccCCCCCCCCcccCCcceEEEEEEccCCC
Q 038439 94 MNEKNFVGLT----VNSEY--IACGSESNEVY-VYHKEISK-----PVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSP 161 (179)
Q Consensus 94 ~~~v~~~~~~----~~~~~--~~~~~~d~~v~-vwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 161 (179)
....+.++.. +++.| ++.|+.+|.|. +..+.... .+..+..... ..+|..|..++..+
T Consensus 407 ~~~~t~I~Vd~~~~~~~~ydVlflGTd~G~vlKvV~~~~~~~~~~~llEElqvf~~----------~~pI~~m~Ls~~~~ 476 (737)
T KOG3611|consen 407 DYRLTQIVVDRVAGLDGNYDVLFLGTDAGTVLKVVSPGKESGKSNVLLEELQVFPD----------AEPIRSMQLSSKRG 476 (737)
T ss_pred cceEEEEEEEEecCCCCcEEEEEEecCCCeEEEEEecCCccCccceeEEEEeecCC----------CCceeEEEecccCC
Confidence 4445556655 45555 67888888753 44433311 1222222211 46799999999888
Q ss_pred eEEEEeCCCcEEE
Q 038439 162 TMLTANSQGTIKV 174 (179)
Q Consensus 162 ~l~~~~~dg~i~i 174 (179)
.|++|+.+|-++|
T Consensus 477 ~LyVgs~~gV~qv 489 (737)
T KOG3611|consen 477 SLYVGSRSGVVQV 489 (737)
T ss_pred eEEEEccCcEEEe
Confidence 9999999886654
No 486
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=76.68 E-value=15 Score=26.46 Aligned_cols=70 Identities=11% Similarity=0.079 Sum_probs=40.9
Q ss_pred CCeEEEEEee-------CCCEEEEeccCCcEEEEEcCCCccccc-cccCCCCCCCCcccCCcceEEEEEEccCCCeEEEE
Q 038439 95 NEKNFVGLTV-------NSEYIACGSESNEVYVYHKEISKPVTW-HRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTA 166 (179)
Q Consensus 95 ~~v~~~~~~~-------~~~~~~~~~~d~~v~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 166 (179)
..+..+.|.. +|.+|+..-..+.|....+.....+.. ..+.. .. ...+..+++.|||.++++.
T Consensus 253 ~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--------~~-~~r~~~v~~~pDG~Lyv~~ 323 (331)
T PF07995_consen 253 SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLG--------GF-GGRPRDVAQGPDGALYVSD 323 (331)
T ss_dssp --EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECT--------TS-SS-EEEEEEETTSEEEEEE
T ss_pred cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccc--------cC-CCCceEEEEcCCCeEEEEE
Confidence 3455566653 355666666566777777764433221 11111 00 4479999999999988888
Q ss_pred eCCCcEE
Q 038439 167 NSQGTIK 173 (179)
Q Consensus 167 ~~dg~i~ 173 (179)
..+|.|.
T Consensus 324 d~~G~iy 330 (331)
T PF07995_consen 324 DSDGKIY 330 (331)
T ss_dssp -TTTTEE
T ss_pred CCCCeEe
Confidence 8888874
No 487
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.31 E-value=40 Score=27.32 Aligned_cols=42 Identities=12% Similarity=0.225 Sum_probs=33.7
Q ss_pred CCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCC
Q 038439 95 NEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSS 136 (179)
Q Consensus 95 ~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~ 136 (179)
+.+..+..+|+.++|+--..+|.+.+-+....+....+....
T Consensus 217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~ 258 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTD 258 (829)
T ss_pred ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCC
Confidence 456678899999999988999999999888877776666443
No 488
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=75.91 E-value=28 Score=25.41 Aligned_cols=19 Identities=11% Similarity=0.288 Sum_probs=13.8
Q ss_pred ceEEEEEEccCCCeEEEEe
Q 038439 149 YFISAVCWKSDSPTMLTAN 167 (179)
Q Consensus 149 ~~i~~~~~~~~~~~l~~~~ 167 (179)
.....++|.|||.+.++-+
T Consensus 124 ~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 124 HSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred ccccCceECCCCCEEEecc
Confidence 3577899999988665544
No 489
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=74.74 E-value=33 Score=27.68 Aligned_cols=71 Identities=10% Similarity=0.046 Sum_probs=48.4
Q ss_pred cCceeEEEEe--eC-CeEEEecCCCcEEEEecCCC--cc-eeeecCCCCCeEEEEEeeC-----CC-EEEEeccCCcEEE
Q 038439 53 KKAVSYVKFL--SN-DELASASTDSTLRLWDVKEN--LP-VRTFRGHMNEKNFVGLTVN-----SE-YIACGSESNEVYV 120 (179)
Q Consensus 53 ~~~i~~~~~~--~~-~~l~~~~~d~~v~iwd~~~~--~~-~~~~~~~~~~v~~~~~~~~-----~~-~~~~~~~d~~v~v 120 (179)
...++.++++ .. +++|.++....|.||-+... +. ...-..+...|.+++|-++ |. .+++++-.|.+.+
T Consensus 163 ~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~ 242 (717)
T PF08728_consen 163 GASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWT 242 (717)
T ss_pred CCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEE
Confidence 4467889988 66 88888888888888765432 11 1111124556888888764 22 6777788999999
Q ss_pred EEc
Q 038439 121 YHK 123 (179)
Q Consensus 121 wd~ 123 (179)
|++
T Consensus 243 ~~I 245 (717)
T PF08728_consen 243 FKI 245 (717)
T ss_pred EEE
Confidence 887
No 490
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=74.09 E-value=28 Score=28.42 Aligned_cols=72 Identities=13% Similarity=0.128 Sum_probs=43.8
Q ss_pred ccCceeEEEEeeCCeEEEecCCCcEEEEecCCCcceeeec---CCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCC
Q 038439 52 HKKAVSYVKFLSNDELASASTDSTLRLWDVKENLPVRTFR---GHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEIS 126 (179)
Q Consensus 52 ~~~~i~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~ 126 (179)
...++....+.. -++-++.+|.|.++...+........ .|...|+++.+.-.+-+++-.+.|- ++.++.++.
T Consensus 625 g~lPvrsla~~e--d~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwvafasG~~-~rlfhtetl 699 (925)
T KOG3522|consen 625 GSLPVRSLAFQE--DFVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASGDE-ERLFHTETL 699 (925)
T ss_pred CCccccchhhhh--ceeeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEEEcCCCE-EEEeccccc
Confidence 334555555543 35667788999999987654433333 3456788888877776665555443 344454443
No 491
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=73.95 E-value=14 Score=30.45 Aligned_cols=51 Identities=10% Similarity=-0.028 Sum_probs=32.9
Q ss_pred CcEEEEEcCCCccccc-cccCCCCCCCCcccCCcceEEEEEEccCCCeEEE-EeCCC-----cEEEEeecC
Q 038439 116 NEVYVYHKEISKPVTW-HRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLT-ANSQG-----TIKVLVLAA 179 (179)
Q Consensus 116 ~~v~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg-----~i~iwd~~~ 179 (179)
+.|.+-|.....+... ... ...|.+..|+|||+.|+- .+.++ .|++-||++
T Consensus 329 ~~L~~~D~dG~n~~~ve~~~-------------~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t 386 (912)
T TIGR02171 329 GNLAYIDYTKGASRAVEIED-------------TISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNA 386 (912)
T ss_pred CeEEEEecCCCCceEEEecC-------------CCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhc
Confidence 4677777665444322 222 567888999999999886 44444 377767653
No 492
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.89 E-value=17 Score=30.62 Aligned_cols=26 Identities=4% Similarity=-0.031 Sum_probs=23.6
Q ss_pred eeCCCEEEEeccCCcEEEEEcCCCcc
Q 038439 103 TVNSEYIACGSESNEVYVYHKEISKP 128 (179)
Q Consensus 103 ~~~~~~~~~~~~d~~v~vwd~~~~~~ 128 (179)
++++..++++..||.+..||...+..
T Consensus 243 ~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 243 SRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred ccCCceEEEEEecCCEEeeecCCCce
Confidence 77899999999999999999998755
No 493
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=73.85 E-value=42 Score=26.43 Aligned_cols=58 Identities=16% Similarity=0.302 Sum_probs=37.7
Q ss_pred EEEEeeCCCEEEEeccC-CcEEEEEcCCCc--cccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEe
Q 038439 99 FVGLTVNSEYIACGSES-NEVYVYHKEISK--PVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTAN 167 (179)
Q Consensus 99 ~~~~~~~~~~~~~~~~d-~~v~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 167 (179)
-++|+|..+.+++++.. +.|.||.+.... .++.+.+.. ......++|-.|.-.|+..+
T Consensus 343 liAfn~kaq~VAVASNTcn~ilVYSv~~s~mPniQqIqLe~-----------~ERPKGiCFltdklLLilVG 403 (671)
T PF15390_consen 343 LIAFNPKAQVVAVASNTCNIILVYSVTPSSMPNIQQIQLES-----------NERPKGICFLTDKLLLILVG 403 (671)
T ss_pred eeeeCCcCCEEEEEecCCcEEEEEEeccccCCCeeEEEccc-----------CCCCceeeEccCCeEEEEec
Confidence 37999999999888764 667888876532 344444432 34556677766666555544
No 494
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=73.36 E-value=38 Score=25.75 Aligned_cols=63 Identities=8% Similarity=0.004 Sum_probs=38.4
Q ss_pred CCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCC
Q 038439 93 HMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDS 160 (179)
Q Consensus 93 ~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 160 (179)
.-...+.|+|.|||++|++--..|.|++++..++.......+... ...........|+++|+-
T Consensus 28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v-----~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEI-----VNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCce-----eccCCCCceeeEEECCCc
Confidence 344568899999998777655469999998665432221111100 000014568889999874
No 495
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=72.58 E-value=63 Score=27.91 Aligned_cols=115 Identities=12% Similarity=0.070 Sum_probs=57.3
Q ss_pred cccCceeEEEEeeCCeEEEecCCCcEEEEecC-CCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCcc-
Q 038439 51 GHKKAVSYVKFLSNDELASASTDSTLRLWDVK-ENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKP- 128 (179)
Q Consensus 51 ~~~~~i~~~~~~~~~~l~~~~~d~~v~iwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~- 128 (179)
..+++|..++=- +++|+++. ...|.+|+++ ....+- +.--.-+++-.+...-.++|+.|.--..|.+.-.+....
T Consensus 1095 E~KGtVsavceV-~G~l~~~~-GqKI~v~~l~r~~~lig-VaFiD~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~r 1171 (1366)
T KOG1896|consen 1095 EQKGTVSAVCEV-RGHLLSSQ-GQKIIVRKLDRDSELIG-VAFIDLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYR 1171 (1366)
T ss_pred hcccceEEEEEe-ccEEEEcc-CcEEEEEEeccCCccee-eEEeccceeEEehhhhhhheehhhhhhceEEEEEccCceE
Confidence 345566555421 26777655 4568889884 333221 111111222222222355666665545555544432111
Q ss_pred ccccccCCCCCCCCcccCCcceEEEEEEccCCC--eEEEEeCCCcEEEEeec
Q 038439 129 VTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSP--TMLTANSQGTIKVLVLA 178 (179)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~dg~i~iwd~~ 178 (179)
+..+..... .-.+.++.|--+|. .++++..++.|++|-..
T Consensus 1172 lsL~srd~~----------~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y~ 1213 (1366)
T KOG1896|consen 1172 LSLLSRDFE----------PLNVYSTEFLVDGSNLSFLVSDADRNIHVYMYA 1213 (1366)
T ss_pred EEEeecCCc----------hhhceeeeeEEcCCeeEEEEEcCCCcEEEEEeC
Confidence 111111100 44577777776665 56778889999988543
No 496
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=72.00 E-value=40 Score=25.35 Aligned_cols=121 Identities=12% Similarity=0.091 Sum_probs=0.0
Q ss_pred CCCccEEEEEcCCce-----eEEeecCCCceeEEEEcCC----CCeEEEEe-----------------CCCcee----ee
Q 038439 1 MAYGKVKVWCTRQEA-----SVLNIDMKANICCVKYNPG----SSNYIAKY-----------------QSTAPC----VH 50 (179)
Q Consensus 1 ~~d~~i~vwd~~~~~-----~~~~~~~~~~v~~~~~~~~----~~~~~~~~-----------------~~~~~~----~~ 50 (179)
|..|.++||+..... .+.+.+-+.+|..++.-+- ....+|+- ..+... +.
T Consensus 44 S~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~~~L~~~y 123 (418)
T PF14727_consen 44 SYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQYQLELIY 123 (418)
T ss_pred ccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCcEEEEEEEE
Q ss_pred cc--cCceeEEEEeeC------CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEE
Q 038439 51 GH--KKAVSYVKFLSN------DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYH 122 (179)
Q Consensus 51 ~~--~~~i~~~~~~~~------~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd 122 (179)
.| ......+.+-|- .++..=+.||.+.+|+-+..-..+.+.. .--..-+.|.+.-..|++++.+..+..|.
T Consensus 124 eh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~sss~~l~~Yk 202 (418)
T PF14727_consen 124 EHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASSSWTLECYK 202 (418)
T ss_pred EEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecCceeEEEec
No 497
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=71.65 E-value=33 Score=24.26 Aligned_cols=110 Identities=6% Similarity=-0.085 Sum_probs=0.0
Q ss_pred eEEEEeeC-CeEEEecCCCcEEEEecCCCcceeeecCCCCCeEEEEEeeCCCEEEEeccCCcEEEEEcCCCccccccccC
Q 038439 57 SYVKFLSN-DELASASTDSTLRLWDVKENLPVRTFRGHMNEKNFVGLTVNSEYIACGSESNEVYVYHKEISKPVTWHRFS 135 (179)
Q Consensus 57 ~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~ 135 (179)
..++-.|| ...+++...+.|--.|..+++..+---+.......+..-|||...++-+.. -|.-.|.++.+...-....
T Consensus 65 ~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~lp~ 143 (353)
T COG4257 65 FDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPLPL 143 (353)
T ss_pred cccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeeccc
Q ss_pred CCCCCCCcccCCcceEEEEEEccCCCeEEEEeC---------CCcEEEEe
Q 038439 136 SPDMDDTDEDAGSYFISAVCWKSDSPTMLTANS---------QGTIKVLV 176 (179)
Q Consensus 136 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---------dg~i~iwd 176 (179)
.+. ........|.+.|++-+++.. .+.|++|+
T Consensus 144 ~~a---------~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfp 184 (353)
T COG4257 144 EHA---------DANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFP 184 (353)
T ss_pred ccC---------CCcccceeeCCCccEEEeeccccceecCcccCceeeec
No 498
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.51 E-value=53 Score=26.65 Aligned_cols=56 Identities=11% Similarity=0.145 Sum_probs=36.0
Q ss_pred ceeEEEEeeCCeEEEecCCCcEEEEecCCCcceee--e--cCCCCCeEEEEEeeCCCEEEE
Q 038439 55 AVSYVKFLSNDELASASTDSTLRLWDVKENLPVRT--F--RGHMNEKNFVGLTVNSEYIAC 111 (179)
Q Consensus 55 ~i~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~--~--~~~~~~v~~~~~~~~~~~~~~ 111 (179)
.+-.+.|+.+..|+....+|++.+|++-. +.+.. + ......|..+.+..+|-.+.+
T Consensus 85 ~lI~mgWs~~eeLI~v~k~g~v~Vy~~~g-e~ie~~svg~e~~~~~I~ec~~f~~GVavlt 144 (829)
T KOG2280|consen 85 ELIGMGWSDDEELICVQKDGTVHVYGLLG-EFIESNSVGFESQMSDIVECRFFHNGVAVLT 144 (829)
T ss_pred CeeeecccCCceEEEEeccceEEEeecch-hhhcccccccccccCceeEEEEecCceEEEe
Confidence 67789999888888899999999999753 32322 1 112233555555555544443
No 499
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=66.84 E-value=20 Score=28.39 Aligned_cols=58 Identities=9% Similarity=0.135 Sum_probs=37.6
Q ss_pred eEEEEEeeCCCEEEEe-----ccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEeC
Q 038439 97 KNFVGLTVNSEYIACG-----SESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTANS 168 (179)
Q Consensus 97 v~~~~~~~~~~~~~~~-----~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 168 (179)
+-.++.+||.++++-+ .+.-.+++-|+.+++.+.... ......++|.+|++.|+-...
T Consensus 131 Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d~i--------------~~~~~~~~Wa~d~~~lfYt~~ 193 (682)
T COG1770 131 LGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPDEI--------------TNTSGSFAWAADGKTLFYTRL 193 (682)
T ss_pred eeeeeeCCCCceEEEEEecccccEEEEEEEecccccccchhh--------------cccccceEEecCCCeEEEEEE
Confidence 4567788998887743 344568999999987654322 223456777777766554433
No 500
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=65.48 E-value=19 Score=25.82 Aligned_cols=48 Identities=8% Similarity=-0.009 Sum_probs=31.9
Q ss_pred CCCEEEEeccCCcEEEEEcCCCccccccccCCCCCCCCcccCCcceEEEEEEccCCCeEEEEe
Q 038439 105 NSEYIACGSESNEVYVYHKEISKPVTWHRFSSPDMDDTDEDAGSYFISAVCWKSDSPTMLTAN 167 (179)
Q Consensus 105 ~~~~~~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 167 (179)
+|++.++-+..|.+.-+|.++|+....... .+....+.|. |+++++|-
T Consensus 212 dgrLwvldsgtGev~~vD~~~G~~e~Va~v-------------pG~~rGL~f~--G~llvVgm 259 (335)
T TIGR03032 212 QGKLWLLNSGRGELGYVDPQAGKFQPVAFL-------------PGFTRGLAFA--GDFAFVGL 259 (335)
T ss_pred CCeEEEEECCCCEEEEEcCCCCcEEEEEEC-------------CCCCccccee--CCEEEEEe
Confidence 577777778888899999887766555444 3345566665 55555443
Done!