BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038441
(169 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 9/109 (8%)
Query: 55 MKSLTMLILDGTTIRELPLSVELLTGLLLNLKDWQYLESLPSTINGLKSFKILNLSSCSK 114
+ L +D + ELP + + GL L +LP++I L + L++ +C +
Sbjct: 103 LSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPE 162
Query: 115 LENVPENLGKVES---------LEELDISRTAIRQLPTSIFLLKNLKAV 154
L +PE L ++ L+ L + T IR LP SI L+NLK++
Sbjct: 163 LTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSL 211
Score = 34.3 bits (77), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 59/130 (45%), Gaps = 15/130 (11%)
Query: 28 HLLVLRLLGTAIRGLPICLKLEKFSKSMK-SLTMLILDGTTIRELPLSVELLTGLLLNLK 86
+L LRL T IR LP + + KS+K + L G I LP EL +L+
Sbjct: 184 NLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEEL------DLR 237
Query: 87 DWQYLESLPSTINGLKSFKILNLSSCSKLENVPENLGKVESLEELD------ISR--TAI 138
L + P G K L L CS L +P ++ ++ LE+LD +SR + I
Sbjct: 238 GCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI 297
Query: 139 RQLPTSIFLL 148
QLP + +L
Sbjct: 298 AQLPANCIIL 307
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 56/100 (56%), Gaps = 10/100 (10%)
Query: 53 KSMKSLTMLILDGTTIRELPLSVELLTGLLLNLKD----WQYLESLPSTI-NGLKSFKIL 107
K + +LT LIL G ++ LP V L NLK+ L+SLP + + L + L
Sbjct: 82 KELTNLTYLILTGNQLQSLPNGV---FDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138
Query: 108 NLSSCSKLENVPENL-GKVESLEELDISRTAIRQLPTSIF 146
NL+ ++L+++P+ + K+ +L ELD+S ++ LP +F
Sbjct: 139 NLAH-NQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVF 177
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 9/121 (7%)
Query: 53 KSMKSLTMLILDGTTIRELPLSVELLTGLLL----NLKDWQYLESL-PSTINGLKSFKIL 107
++ ++LT+L L + + TGL L +L D L S+ P+T +GL L
Sbjct: 52 RACRNLTILWLHSNVLARI--DAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 109
Query: 108 NLSSCSKLENVPENLGKVESLEELDISRTAIRQLPTSIFLLKNLKAVDHYHLHHGICASL 167
+L C E P + +L+ L + A++ LP F ++L + H LH +S+
Sbjct: 110 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF--RDLGNLTHLFLHGNRISSV 167
Query: 168 P 168
P
Sbjct: 168 P 168
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 9/121 (7%)
Query: 53 KSMKSLTMLILDGTTIRELPLSVELLTGLLL----NLKDWQYLESL-PSTINGLKSFKIL 107
++ ++LT+L L + + TGL L +L D L S+ P+T +GL L
Sbjct: 53 RACRNLTILWLHSNVLARI--DAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110
Query: 108 NLSSCSKLENVPENLGKVESLEELDISRTAIRQLPTSIFLLKNLKAVDHYHLHHGICASL 167
+L C E P + +L+ L + A++ LP F ++L + H LH +S+
Sbjct: 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF--RDLGNLTHLFLHGNRISSV 168
Query: 168 P 168
P
Sbjct: 169 P 169
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 33.1 bits (74), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 32/42 (76%), Gaps = 1/42 (2%)
Query: 105 KILNLSSCSKLENVPENLGKVESLEELDISRTAIRQLPTSIF 146
K+L+L S +K++++P+ + K+E+L+EL+++ ++ +P IF
Sbjct: 424 KVLDLHS-NKIKSIPKQVVKLEALQELNVASNQLKSVPDGIF 464
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 32.7 bits (73), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 66/144 (45%), Gaps = 8/144 (5%)
Query: 20 PEIMGRMEHLLVLRLLGTAIRGLPICLKLEKFSKSMKSLTMLILDGTTIRE--LPLSVEL 77
PE + +L L + T I+ LP K+ K + + I T R + LS E
Sbjct: 97 PEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFES 156
Query: 78 LTGLLLNLKDWQYLESLPSTINGLKSFKILNLSSCSKLENVPENLGKVESLEE-LDISRT 136
+ L LN Q + + S NG + LNLS + LE +P ++ S LDISRT
Sbjct: 157 VI-LWLNKNGIQEIHN--SAFNGTQ-LDELNLSDNNNLEELPNDVFHGASGPVILDISRT 212
Query: 137 AIRQLPT-SIFLLKNLKAVDHYHL 159
I LP+ + LK L+A Y+L
Sbjct: 213 RIHSLPSYGLENLKKLRARSTYNL 236
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 31.2 bits (69), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 65/144 (45%), Gaps = 8/144 (5%)
Query: 20 PEIMGRMEHLLVLRLLGTAIRGLPICLKLEKFSKSMKSLTMLILDGTTIRE--LPLSVEL 77
PE + +L L + T I+ LP K+ K + + I T R + LS E
Sbjct: 97 PEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFES 156
Query: 78 LTGLLLNLKDWQYLESLPSTINGLKSFKILNLSSCSKLENVPENLGKVESLEE-LDISRT 136
+ L LN Q + + NG + LNLS + LE +P ++ S LDISRT
Sbjct: 157 VI-LWLNKNGIQEIHN--CAFNGTQ-LDELNLSDNNNLEELPNDVFHGASGPVILDISRT 212
Query: 137 AIRQLPT-SIFLLKNLKAVDHYHL 159
I LP+ + LK L+A Y+L
Sbjct: 213 RIHSLPSYGLENLKKLRARSTYNL 236
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 31.2 bits (69), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 73/181 (40%), Gaps = 25/181 (13%)
Query: 1 ALKFPSTLNLF----GLLKFRLFPEIMGRMEHLLVLRLLGTAIRGL------PICLKLEK 50
+LKF +LNLF GL L +G E L GL I L+ +
Sbjct: 205 SLKFGGSLNLFIIFKGLQNSTLQSLWLGTFEDTDDQYLTSATFEGLCDMSVESINLQKHR 264
Query: 51 FSKSMKSLTMLILDGTTIRELPLSVELLTGLLLNLKDWQYLESLPSTINGLKSFKILNLS 110
FS + S T T ++EL L+ L GL ++ L+ L N +N +
Sbjct: 265 FSD-LSSSTFRCF--TRVQELDLTAAHLNGLPSGIEGMNSLKKLVLNANSFDQLCQINAA 321
Query: 111 SCSKLENV------------PENLGKVESLEELDISRTAIRQLPTSIFLLKNLKAVDHYH 158
S L ++ L K+E+L++LD+S + I LKNL+ + + +
Sbjct: 322 SFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLN 381
Query: 159 L 159
L
Sbjct: 382 L 382
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 30.8 bits (68), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 3/95 (3%)
Query: 55 MKSLTMLILDGTTIR-ELPLSVELLTGL-LLNLKDWQYLESLPSTINGLKSFKILNLSSC 112
+K+L LILD + E+P + T L ++L + + +P I L++ IL LS+
Sbjct: 462 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 521
Query: 113 SKLENVPENLGKVESLEELDISRTAIR-QLPTSIF 146
S N+P LG SL LD++ +P ++F
Sbjct: 522 SFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF 556
Score = 26.6 bits (57), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 28/58 (48%)
Query: 81 LLLNLKDWQYLESLPSTINGLKSFKILNLSSCSKLENVPENLGKVESLEELDISRTAI 138
+LNL S+P + L+ IL+LSS +P+ + + L E+D+S +
Sbjct: 656 FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 713
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 30.8 bits (68), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 3/95 (3%)
Query: 55 MKSLTMLILDGTTIR-ELPLSVELLTGL-LLNLKDWQYLESLPSTINGLKSFKILNLSSC 112
+K+L LILD + E+P + T L ++L + + +P I L++ IL LS+
Sbjct: 465 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 524
Query: 113 SKLENVPENLGKVESLEELDISRTAIR-QLPTSIF 146
S N+P LG SL LD++ +P ++F
Sbjct: 525 SFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF 559
Score = 26.6 bits (57), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 28/58 (48%)
Query: 81 LLLNLKDWQYLESLPSTINGLKSFKILNLSSCSKLENVPENLGKVESLEELDISRTAI 138
+LNL S+P + L+ IL+LSS +P+ + + L E+D+S +
Sbjct: 659 FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 13/97 (13%)
Query: 53 KSMKSLTMLILDGTTIRELPL-------SVELLTGLLLNLKDWQYLESLPSTINGLKSFK 105
+S+ L+ LIL G I+ L L S++ L L NL LE+ P I LK+ K
Sbjct: 75 QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLAS---LENFP--IGHLKTLK 129
Query: 106 ILNLS-SCSKLENVPENLGKVESLEELDISRTAIRQL 141
LN++ + + +PE + +LE LD+S I+ +
Sbjct: 130 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 166
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 15/98 (15%)
Query: 53 KSMKSLTMLILDGTTIRELPLSVELLTGLLLNLKDWQYLESLPSTINGLKSFKILNLSSC 112
+S+ L+ LIL G I+ L L G L Q L ++ + + L++F I +L +
Sbjct: 73 QSLSHLSTLILTGNPIQSLAL------GAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126
Query: 113 SKLE---------NVPENLGKVESLEELDISRTAIRQL 141
+L +PE + +LE LD+S I+ +
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 51/104 (49%), Gaps = 20/104 (19%)
Query: 48 LEKFSKSMKSLTMLILDGT-----TIRELPLSVELLTGLLLNLKDWQYLESLPSTINGLK 102
LE S+ SL D T +I L LS +LTG LP +
Sbjct: 405 LETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTG--------SVFRCLPPKV---- 452
Query: 103 SFKILNLSSCSKLENVPENLGKVESLEELDISRTAIRQLPTSIF 146
K+L+L + +++ ++P+++ +++L+EL+++ ++ +P +F
Sbjct: 453 --KVLDLHN-NRIMSIPKDVTHLQALQELNVASNQLKSVPDGVF 493
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 15/98 (15%)
Query: 53 KSMKSLTMLILDGTTIRELPLSVELLTGLLLNLKDWQYLESLPSTINGLKSFKILNLSSC 112
+S+ L+ LIL G I+ L L G L Q L ++ + + L++F I +L +
Sbjct: 97 QSLSHLSTLILTGNPIQSLAL------GAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 150
Query: 113 SKLE---------NVPENLGKVESLEELDISRTAIRQL 141
+L +PE + +LE LD+S I+ +
Sbjct: 151 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 10/100 (10%)
Query: 53 KSMKSLTMLILDGTTIRELPLSVELLTGLLLNLKDW----QYLESLPSTI-NGLKSFKIL 107
K + +LT LIL G ++ LP V L NLK+ L+SLP + + L + L
Sbjct: 82 KELTNLTYLILTGNQLQSLPNGV---FDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138
Query: 108 NLSSCSKLENVPENL-GKVESLEELDISRTAIRQLPTSIF 146
L ++L+++P+ + K+ +L LD+ ++ LP +F
Sbjct: 139 YLYH-NQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVF 177
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 15/98 (15%)
Query: 53 KSMKSLTMLILDGTTIRELPLSVELLTGLLLNLKDWQYLESLPSTINGLKSFKILNLSSC 112
+S+ L+ LIL G I+ L L G L Q L ++ + + L++F I +L +
Sbjct: 73 QSLSHLSTLILTGNPIQSLAL------GAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126
Query: 113 SKLE---------NVPENLGKVESLEELDISRTAIRQL 141
+L +PE + +LE LD+S I+ +
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 26/53 (49%)
Query: 94 LPSTINGLKSFKILNLSSCSKLENVPENLGKVESLEELDISRTAIRQLPTSIF 146
LP L++ L+LS C + P + SL+ L+++ ++ +P IF
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIF 514
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 13/97 (13%)
Query: 53 KSMKSLTMLILDGTTIRELPL-------SVELLTGLLLNLKDWQYLESLPSTINGLKSFK 105
+S+ L+ LIL G I+ L L S++ L + NL LE+ P I LK+ K
Sbjct: 74 QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS---LENFP--IGHLKTLK 128
Query: 106 ILNLS-SCSKLENVPENLGKVESLEELDISRTAIRQL 141
LN++ + + +PE + +LE LD+S I+ +
Sbjct: 129 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 165
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 13/97 (13%)
Query: 53 KSMKSLTMLILDGTTIRELPL-------SVELLTGLLLNLKDWQYLESLPSTINGLKSFK 105
+S+ L+ LIL G I+ L L S++ L + NL LE+ P I LK+ K
Sbjct: 73 QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS---LENFP--IGHLKTLK 127
Query: 106 ILNLS-SCSKLENVPENLGKVESLEELDISRTAIRQL 141
LN++ + + +PE + +LE LD+S I+ +
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
>pdb|1B04|A Chain A, Structure Of The Adenylation Domain Of An Nad+ Dependent
Ligase
pdb|1B04|B Chain B, Structure Of The Adenylation Domain Of An Nad+ Dependent
Ligase
Length = 318
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 64/151 (42%), Gaps = 8/151 (5%)
Query: 6 STLNLFGLLKFRLFPEIMGRMEHLLVLRLLGTAIRGLPICLKLEKFSKSMKSLTMLILDG 65
S N FG R F + R E + AI GL + ++ E ++ T DG
Sbjct: 83 SLANAFGEGDLRDFDRRV-RQEVGEAAYVCELAIDGLAVSVRYED-GYFVQGATRG--DG 138
Query: 66 TTIRELPLSVELLTGLLLNLKDWQYLESLPSTINGLKSFKILNLSSCSKLENV---PENL 122
TT ++ +++ + L L LK+ LE+ SF LN ++ E + P N
Sbjct: 139 TTGEDITENLKTIRSLPLRLKEPVSLEARGEAFMPKASFLRLNEERKARGEELFANPRNA 198
Query: 123 GKVESLEELDISRTAIRQLPTSIFLLKNLKA 153
SL +LD A RQL ++ L + +A
Sbjct: 199 A-AGSLRQLDPKVAASRQLDLFVYGLADAEA 228
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 13/97 (13%)
Query: 53 KSMKSLTMLILDGTTIRELPL-------SVELLTGLLLNLKDWQYLESLPSTINGLKSFK 105
+S+ L+ LIL G I+ L L S++ L + NL LE+ P I LK+ K
Sbjct: 75 QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS---LENFP--IGHLKTLK 129
Query: 106 ILNLS-SCSKLENVPENLGKVESLEELDISRTAIRQL 141
LN++ + + +PE + +LE LD+S I+ +
Sbjct: 130 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 166
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 13/97 (13%)
Query: 53 KSMKSLTMLILDGTTIRELPL-------SVELLTGLLLNLKDWQYLESLPSTINGLKSFK 105
+S+ L+ LIL G I+ L L S++ L + NL LE+ P I LK+ K
Sbjct: 74 QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS---LENFP--IGHLKTLK 128
Query: 106 ILNLS-SCSKLENVPENLGKVESLEELDISRTAIRQL 141
LN++ + + +PE + +LE LD+S I+ +
Sbjct: 129 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 165
>pdb|1JSH|A Chain A, Crystal Structure Of H9 Haemagglutinin Complexed With Lsta
Receptor Analog
pdb|1JSI|A Chain A, Crystal Structure Of H9 Haemagglutinin Bound To Lstc
Receptor Analog
pdb|1JSD|A Chain A, Crystal Structure Of Swine H9 Haemagglutinin
Length = 319
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 19/71 (26%)
Query: 61 LILDGTTIRELPLSVELLTGLLLNLKDWQYLESLPSTINGLKSFKILNLSSCSKLENVPE 120
LILD TI L + LLL ++W Y+ PS +NG+ C
Sbjct: 50 LILDTCTIEGL-IYGNPSCDLLLGGREWSYIVERPSAVNGM----------CYP------ 92
Query: 121 NLGKVESLEEL 131
G VE+LEEL
Sbjct: 93 --GNVENLEEL 101
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 60/137 (43%), Gaps = 17/137 (12%)
Query: 36 GTAIRGL---PICLKLEKFSKSMKSLTMLILDGTTIRELPLSVEL-LTGLLLNLKDWQYL 91
GTA P+ K+E F+ +L + + + + + ++ KD +Y
Sbjct: 163 GTATNSAVSTPLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYD 222
Query: 92 ESLPSTINGLKSFKILNLSSCSKLENVPENLGKVESLEELDISRTAIRQLPTSIFLLKNL 151
+ L ++ L + +I N+S+ N+ K + L L ++ ++ +LP I L NL
Sbjct: 223 DQLWHALD-LSNLQIFNISA---------NIFKYDFLTRLYLNGNSLTELPAEIKNLSNL 272
Query: 152 KAVDHYHLHHGICASLP 168
+ +D L H SLP
Sbjct: 273 RVLD---LSHNRLTSLP 286
>pdb|2REI|A Chain A, Kinase Domain Of Human Ephrin Type-a Receptor 7 (epha7)
pdb|3DKO|A Chain A, Complex Between The Kinase Domain Of Human Ephrin Type-A
Receptor 7 (Epha7) And Inhibitor Alw-Ii-49-7
Length = 318
Score = 26.6 bits (57), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 22 IMGRMEHLLVLRLLGTAIRGLPICLKLE 49
IMG+ +H V+ L G RG P+ + +E
Sbjct: 97 IMGQFDHPNVVHLEGVVTRGKPVMIVIE 124
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.141 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,645,236
Number of Sequences: 62578
Number of extensions: 170415
Number of successful extensions: 928
Number of sequences better than 100.0: 56
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 884
Number of HSP's gapped (non-prelim): 69
length of query: 169
length of database: 14,973,337
effective HSP length: 92
effective length of query: 77
effective length of database: 9,216,161
effective search space: 709644397
effective search space used: 709644397
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)