Query 038441
Match_columns 169
No_of_seqs 129 out of 1474
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 11:06:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038441.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038441hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0617 Ras suppressor protein 99.8 1E-21 2.2E-26 129.9 -3.7 152 3-168 33-189 (264)
2 PLN00113 leucine-rich repeat r 99.7 6.7E-17 1.4E-21 135.1 11.8 154 2-155 92-266 (968)
3 PLN00113 leucine-rich repeat r 99.7 1.2E-16 2.7E-21 133.5 11.9 145 3-155 140-290 (968)
4 KOG4194 Membrane glycoprotein 99.6 1.3E-16 2.8E-21 122.5 0.3 158 1-167 267-431 (873)
5 KOG0617 Ras suppressor protein 99.6 5.1E-17 1.1E-21 107.7 -2.3 135 2-148 55-195 (264)
6 KOG0444 Cytoskeletal regulator 99.5 4.5E-16 9.8E-21 120.9 -0.8 146 2-158 221-371 (1255)
7 KOG0472 Leucine-rich repeat pr 99.5 3.7E-16 8.1E-21 115.4 -3.7 157 6-169 117-292 (565)
8 KOG0444 Cytoskeletal regulator 99.5 6.1E-15 1.3E-19 114.7 0.7 150 5-168 105-284 (1255)
9 PLN03210 Resistant to P. syrin 99.5 4.5E-13 9.8E-18 113.8 11.9 153 2-155 656-875 (1153)
10 KOG0472 Leucine-rich repeat pr 99.5 1.3E-14 2.9E-19 107.3 1.0 159 4-169 363-544 (565)
11 KOG4194 Membrane glycoprotein 99.4 1.9E-13 4.2E-18 105.4 4.2 34 122-155 289-323 (873)
12 PLN03210 Resistant to P. syrin 99.4 5.8E-12 1.3E-16 107.1 11.2 99 4-112 612-714 (1153)
13 KOG0618 Serine/threonine phosp 99.3 1.3E-13 2.9E-18 110.6 -0.6 147 2-158 309-485 (1081)
14 PRK15370 E3 ubiquitin-protein 99.3 9.6E-12 2.1E-16 100.9 9.5 58 103-168 326-383 (754)
15 KOG0532 Leucine-rich repeat (L 99.3 1.3E-13 2.9E-18 105.7 -3.5 145 6-166 101-248 (722)
16 PRK15370 E3 ubiquitin-protein 99.3 2E-11 4.3E-16 99.1 8.7 142 4-168 200-362 (754)
17 PRK15387 E3 ubiquitin-protein 99.3 5.2E-11 1.1E-15 96.6 10.1 127 27-164 302-457 (788)
18 PF14580 LRR_9: Leucine-rich r 99.2 2.4E-11 5.3E-16 82.2 5.4 123 24-155 16-146 (175)
19 KOG0618 Serine/threonine phosp 99.2 6.8E-13 1.5E-17 106.6 -2.8 154 6-163 290-468 (1081)
20 cd00116 LRR_RI Leucine-rich re 99.1 4.2E-11 9.1E-16 88.6 4.4 37 4-40 82-121 (319)
21 PRK15387 E3 ubiquitin-protein 99.1 4.7E-10 1E-14 91.2 9.9 55 6-72 204-258 (788)
22 PF14580 LRR_9: Leucine-rich r 99.1 1.1E-10 2.5E-15 78.9 5.1 120 4-134 20-148 (175)
23 cd00116 LRR_RI Leucine-rich re 99.1 7.3E-11 1.6E-15 87.3 3.8 13 126-138 250-262 (319)
24 COG4886 Leucine-rich repeat (L 99.1 1.3E-10 2.9E-15 88.6 3.8 141 4-157 141-285 (394)
25 KOG1259 Nischarin, modulator o 99.0 4.8E-11 1E-15 86.0 -0.0 130 3-143 284-416 (490)
26 COG4886 Leucine-rich repeat (L 99.0 5.1E-10 1.1E-14 85.4 3.9 150 3-167 116-270 (394)
27 KOG0532 Leucine-rich repeat (L 99.0 1.7E-11 3.8E-16 94.4 -4.2 109 53-168 118-227 (722)
28 KOG4237 Extracellular matrix p 98.9 1.7E-10 3.7E-15 85.6 0.0 120 46-168 56-180 (498)
29 PLN03150 hypothetical protein; 98.9 5.7E-09 1.2E-13 84.0 7.4 98 58-155 420-521 (623)
30 KOG1259 Nischarin, modulator o 98.9 9.3E-10 2E-14 79.5 2.3 100 53-155 281-405 (490)
31 PLN03150 hypothetical protein; 98.8 1.5E-08 3.1E-13 81.7 7.7 101 29-137 420-526 (623)
32 KOG3207 Beta-tubulin folding c 98.8 1.2E-09 2.6E-14 81.9 1.4 132 2-139 145-284 (505)
33 KOG4237 Extracellular matrix p 98.8 6.1E-10 1.3E-14 82.7 -0.7 80 75-155 270-352 (498)
34 KOG3207 Beta-tubulin folding c 98.8 6.5E-10 1.4E-14 83.4 -1.8 159 2-167 120-286 (505)
35 PF13855 LRR_8: Leucine rich r 98.7 1.8E-08 3.9E-13 56.5 3.7 55 57-111 2-58 (61)
36 PF13855 LRR_8: Leucine rich r 98.5 7.7E-08 1.7E-12 53.9 3.2 52 103-155 2-55 (61)
37 KOG4658 Apoptotic ATPase [Sign 98.4 2E-07 4.3E-12 77.4 4.3 98 57-155 546-648 (889)
38 KOG4658 Apoptotic ATPase [Sign 98.4 3.6E-07 7.9E-12 75.9 5.4 84 53-137 568-653 (889)
39 PF12799 LRR_4: Leucine Rich r 98.3 8.9E-07 1.9E-11 46.1 3.7 40 102-142 1-40 (44)
40 KOG4579 Leucine-rich repeat (L 98.3 6.1E-08 1.3E-12 62.5 -0.9 89 54-144 51-141 (177)
41 PRK15386 type III secretion pr 98.3 2.7E-06 5.8E-11 64.7 7.6 61 2-74 51-113 (426)
42 KOG3665 ZYG-1-like serine/thre 98.2 8.9E-07 1.9E-11 71.9 3.8 131 3-139 122-263 (699)
43 KOG0531 Protein phosphatase 1, 98.2 3.1E-07 6.8E-12 70.7 0.7 143 2-155 94-261 (414)
44 KOG1909 Ran GTPase-activating 98.2 3.7E-07 7.9E-12 67.1 0.6 129 22-155 87-247 (382)
45 PRK15386 type III secretion pr 98.2 7.1E-06 1.5E-10 62.5 7.4 114 23-155 48-183 (426)
46 KOG4579 Leucine-rich repeat (L 98.2 1.6E-07 3.6E-12 60.5 -1.5 105 5-121 29-141 (177)
47 KOG3665 ZYG-1-like serine/thre 98.1 1.6E-06 3.4E-11 70.5 2.9 128 26-159 121-260 (699)
48 PF12799 LRR_4: Leucine Rich r 98.1 3.1E-06 6.6E-11 44.0 2.5 40 126-168 1-40 (44)
49 KOG1859 Leucine-rich repeat pr 98.1 2.5E-07 5.4E-12 74.0 -2.9 131 20-155 102-260 (1096)
50 KOG1644 U2-associated snRNP A' 98.0 1.3E-05 2.9E-10 55.0 5.3 102 26-136 41-150 (233)
51 KOG1859 Leucine-rich repeat pr 97.9 2E-07 4.4E-12 74.5 -5.2 116 13-139 173-292 (1096)
52 KOG1909 Ran GTPase-activating 97.9 8.5E-06 1.8E-10 60.1 3.1 155 2-165 29-226 (382)
53 KOG2120 SCF ubiquitin ligase, 97.9 1.4E-06 3E-11 63.2 -1.7 111 45-155 244-369 (419)
54 KOG2120 SCF ubiquitin ligase, 97.7 4.1E-06 8.8E-11 60.9 -0.9 127 4-136 235-373 (419)
55 KOG0531 Protein phosphatase 1, 97.7 6.5E-06 1.4E-10 63.5 0.1 83 55-141 94-177 (414)
56 KOG1644 U2-associated snRNP A' 97.5 0.00021 4.6E-09 49.2 4.6 105 53-159 39-150 (233)
57 KOG2123 Uncharacterized conser 97.2 1.3E-05 2.8E-10 57.8 -4.1 95 3-108 19-123 (388)
58 PF13306 LRR_5: Leucine rich r 96.9 0.0065 1.4E-07 38.7 7.1 114 23-150 8-127 (129)
59 PF00560 LRR_1: Leucine Rich R 96.9 0.00051 1.1E-08 29.9 1.2 21 57-77 1-21 (22)
60 PF00560 LRR_1: Leucine Rich R 96.9 0.00054 1.2E-08 29.8 1.1 21 127-147 1-21 (22)
61 KOG4341 F-box protein containi 96.9 5.1E-05 1.1E-09 57.4 -3.7 33 4-36 139-173 (483)
62 KOG2982 Uncharacterized conser 96.8 0.00038 8.2E-09 50.9 0.5 63 21-88 91-156 (418)
63 KOG2739 Leucine-rich acidic nu 96.7 0.0011 2.4E-08 47.3 2.1 98 56-155 43-149 (260)
64 KOG4341 F-box protein containi 96.7 0.00077 1.7E-08 51.3 1.2 141 7-155 272-432 (483)
65 COG5238 RNA1 Ran GTPase-activa 96.5 0.0044 9.5E-08 45.0 4.1 129 22-155 87-248 (388)
66 PF13306 LRR_5: Leucine rich r 96.3 0.034 7.4E-07 35.3 7.1 111 3-128 12-128 (129)
67 KOG2739 Leucine-rich acidic nu 96.3 0.0032 6.8E-08 45.0 2.2 59 53-112 62-126 (260)
68 PF13504 LRR_7: Leucine rich r 96.0 0.0054 1.2E-07 24.8 1.5 15 57-71 2-16 (17)
69 KOG2123 Uncharacterized conser 95.9 0.00054 1.2E-08 49.7 -2.9 99 25-132 17-123 (388)
70 KOG2982 Uncharacterized conser 95.5 0.0053 1.2E-07 45.1 0.9 83 26-111 70-155 (418)
71 COG5238 RNA1 Ran GTPase-activa 95.4 0.055 1.2E-06 39.5 5.5 136 2-139 91-255 (388)
72 KOG1947 Leucine rich repeat pr 95.2 0.0046 1E-07 48.2 -0.4 113 3-115 188-308 (482)
73 smart00369 LRR_TYP Leucine-ric 95.1 0.018 4E-07 25.8 1.7 20 56-75 2-21 (26)
74 smart00370 LRR Leucine-rich re 95.1 0.018 4E-07 25.8 1.7 20 56-75 2-21 (26)
75 KOG3864 Uncharacterized conser 93.4 0.015 3.3E-07 40.2 -0.7 78 29-111 103-185 (221)
76 KOG1947 Leucine rich repeat pr 92.3 0.023 5E-07 44.3 -1.3 83 3-89 214-306 (482)
77 smart00364 LRR_BAC Leucine-ric 90.8 0.16 3.4E-06 23.0 1.1 18 56-73 2-19 (26)
78 KOG3864 Uncharacterized conser 89.5 0.091 2E-06 36.6 -0.3 77 59-135 104-185 (221)
79 smart00367 LRR_CC Leucine-rich 88.7 0.32 7E-06 21.7 1.3 16 3-18 2-17 (26)
80 KOG0473 Leucine-rich repeat pr 88.4 0.013 2.8E-07 41.7 -5.1 52 59-111 68-120 (326)
81 smart00365 LRR_SD22 Leucine-ri 84.2 0.9 1.9E-05 20.5 1.5 16 56-71 2-17 (26)
82 PF13516 LRR_6: Leucine Rich r 83.8 0.7 1.5E-05 20.0 1.1 14 126-139 2-15 (24)
83 KOG0473 Leucine-rich repeat pr 78.6 0.034 7.4E-07 39.7 -6.3 85 53-139 39-124 (326)
84 smart00368 LRR_RI Leucine rich 77.9 1.8 3.9E-05 19.7 1.4 13 28-40 3-15 (28)
85 KOG3763 mRNA export factor TAP 45.4 15 0.00033 29.8 1.8 65 24-92 215-284 (585)
No 1
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.80 E-value=1e-21 Score=129.89 Aligned_cols=152 Identities=24% Similarity=0.349 Sum_probs=135.8
Q ss_pred CCCcEEeeCCccccccCchhhcCCCCccEEEecCCCCCCCCCCCCccccc---cCCCCccEEEeeCCcCccccccccccc
Q 038441 3 KFPSTLNLFGLLKFRLFPEIMGRMEHLLVLRLLGTAIRGLPICLKLEKFS---KSMKSLTMLILDGTTIRELPLSVELLT 79 (169)
Q Consensus 3 ~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~---~~~~~L~~L~l~~~~~~~lp~~~~~~~ 79 (169)
..+++|.+++ +.++.+|+.++.+.+|+.|++.. ++++++| ..+++|+.|+++-|.+..+|.+|+.++
T Consensus 33 s~ITrLtLSH-NKl~~vppnia~l~nlevln~~n---------nqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p 102 (264)
T KOG0617|consen 33 SNITRLTLSH-NKLTVVPPNIAELKNLEVLNLSN---------NQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFP 102 (264)
T ss_pred hhhhhhhccc-CceeecCCcHHHhhhhhhhhccc---------chhhhcChhhhhchhhhheecchhhhhcCccccCCCc
Confidence 4567888988 46888999999999999999999 6677777 778999999999999999999999999
Q ss_pred ceE-EEecccccCC-ccccccccCCccCEEecCCCCCCCCcchhhhcCCCCceEeccCCcceecChhhhcCCCcceEEcc
Q 038441 80 GLL-LNLKDWQYLE-SLPSTINGLKSFKILNLSSCSKLENVPENLGKVESLEELDISRTAIRQLPTSIFLLKNLKAVDHY 157 (169)
Q Consensus 80 ~L~-l~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~~~ 157 (169)
.|+ +++..|+... .+|+.++.++.|+.|+++. +...-+|..++.+.+|+.|.+..|.+-++|..++.++.|++|+
T Consensus 103 ~levldltynnl~e~~lpgnff~m~tlralyl~d-ndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelh-- 179 (264)
T KOG0617|consen 103 ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGD-NDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELH-- 179 (264)
T ss_pred hhhhhhccccccccccCCcchhHHHHHHHHHhcC-CCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHh--
Confidence 999 9999886654 5788999999999999998 7889999999999999999999999999999999999999999
Q ss_pred cccccccccCC
Q 038441 158 HLHHGICASLP 168 (169)
Q Consensus 158 ~l~~~~~~~l~ 168 (169)
+..+.++-+|
T Consensus 180 -iqgnrl~vlp 189 (264)
T KOG0617|consen 180 -IQGNRLTVLP 189 (264)
T ss_pred -cccceeeecC
Confidence 7777777666
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.72 E-value=6.7e-17 Score=135.08 Aligned_cols=154 Identities=27% Similarity=0.350 Sum_probs=92.8
Q ss_pred CCCCcEEeeCCccccccCchhhc-CCCCccEEEecCCCCCC-CCC------------CCCcc-ccc---cCCCCccEEEe
Q 038441 2 LKFPSTLNLFGLLKFRLFPEIMG-RMEHLLVLRLLGTAIRG-LPI------------CLKLE-KFS---KSMKSLTMLIL 63 (169)
Q Consensus 2 l~~l~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~n~l~~-~~~------------~~~l~-~~~---~~~~~L~~L~l 63 (169)
+++|+.|++++|.....+|..+. .+++|++|++++|.+++ ++. .+.+. .+| ..+++|++|++
T Consensus 92 l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L 171 (968)
T PLN00113 92 LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDL 171 (968)
T ss_pred CCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEEC
Confidence 56778888887765556776544 77888888888877654 110 11111 222 44555666666
Q ss_pred eCCcCc-ccccccccccceE-EEecccccCCccccccccCCccCEEecCCCCCCCCcchhhhcCCCCceEeccCCcce-e
Q 038441 64 DGTTIR-ELPLSVELLTGLL-LNLKDWQYLESLPSTINGLKSFKILNLSSCSKLENVPENLGKVESLEELDISRTAIR-Q 140 (169)
Q Consensus 64 ~~~~~~-~lp~~~~~~~~L~-l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~ 140 (169)
++|.+. .+|..++.+++|+ +++++|+..+..|..+..+++|++|++++|.....+|..+.++++|++|++++|.+. .
T Consensus 172 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 251 (968)
T PLN00113 172 GGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGP 251 (968)
T ss_pred ccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccc
Confidence 666554 4455556666666 666665555555555666666666666664444456666666666666666666665 4
Q ss_pred cChhhhcCCCcceEE
Q 038441 141 LPTSIFLLKNLKAVD 155 (169)
Q Consensus 141 ~~~~~~~l~~L~~L~ 155 (169)
+|..+..+++|+.|+
T Consensus 252 ~p~~l~~l~~L~~L~ 266 (968)
T PLN00113 252 IPSSLGNLKNLQYLF 266 (968)
T ss_pred cChhHhCCCCCCEEE
Confidence 555666666666666
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.70 E-value=1.2e-16 Score=133.49 Aligned_cols=145 Identities=26% Similarity=0.392 Sum_probs=79.8
Q ss_pred CCCcEEeeCCccccccCchhhcCCCCccEEEecCCCCCCCCCCCCccccc---cCCCCccEEEeeCCcCc-ccccccccc
Q 038441 3 KFPSTLNLFGLLKFRLFPEIMGRMEHLLVLRLLGTAIRGLPICLKLEKFS---KSMKSLTMLILDGTTIR-ELPLSVELL 78 (169)
Q Consensus 3 ~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~---~~~~~L~~L~l~~~~~~-~lp~~~~~~ 78 (169)
+.|++|++++|.....+|..+..+++|++|++++|.+.+ .+| ..+++|++|++++|.++ .+|..++.+
T Consensus 140 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~--------~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 211 (968)
T PLN00113 140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVG--------KIPNSLTNLTSLEFLTLASNQLVGQIPRELGQM 211 (968)
T ss_pred CCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccc--------cCChhhhhCcCCCeeeccCCCCcCcCChHHcCc
Confidence 445555555554444556666667777777777755543 122 34555666666666554 345555555
Q ss_pred cceE-EEecccccCCccccccccCCccCEEecCCCCCCCCcchhhhcCCCCceEeccCCcce-ecChhhhcCCCcceEE
Q 038441 79 TGLL-LNLKDWQYLESLPSTINGLKSFKILNLSSCSKLENVPENLGKVESLEELDISRTAIR-QLPTSIFLLKNLKAVD 155 (169)
Q Consensus 79 ~~L~-l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~l~~L~~L~ 155 (169)
++|+ +++++|+.....|..+..+++|++|++++|...+.+|..+.++++|++|++++|.+. .+|..+..+++|+.|+
T Consensus 212 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 290 (968)
T PLN00113 212 KSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLD 290 (968)
T ss_pred CCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEE
Confidence 5666 666555444455555555555666655554444445555555555555555555554 3444444555555555
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.60 E-value=1.3e-16 Score=122.50 Aligned_cols=158 Identities=22% Similarity=0.233 Sum_probs=115.1
Q ss_pred CCCCCcEEeeCCccccccCc-hhhcCCCCccEEEecCCCCCCCCCCCCccccccCCCCccEEEeeCCcCcccccc-cccc
Q 038441 1 ALKFPSTLNLFGLLKFRLFP-EIMGRMEHLLVLRLLGTAIRGLPICLKLEKFSKSMKSLTMLILDGTTIRELPLS-VELL 78 (169)
Q Consensus 1 ~l~~l~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~lp~~-~~~~ 78 (169)
|+..++.|++..++ +..+. .++.+++.|+.|+++.|++..+ .++.. ...++|++|++++|.++.++++ +..+
T Consensus 267 ~l~kme~l~L~~N~-l~~vn~g~lfgLt~L~~L~lS~NaI~ri----h~d~W-sftqkL~~LdLs~N~i~~l~~~sf~~L 340 (873)
T KOG4194|consen 267 GLEKMEHLNLETNR-LQAVNEGWLFGLTSLEQLDLSYNAIQRI----HIDSW-SFTQKLKELDLSSNRITRLDEGSFRVL 340 (873)
T ss_pred eecccceeecccch-hhhhhcccccccchhhhhccchhhhhee----ecchh-hhcccceeEeccccccccCChhHHHHH
Confidence 35566777776643 44443 3466777777788887554331 11111 5567899999999999998765 7778
Q ss_pred cceE-EEecccccCCccccccccCCccCEEecCCCCCCC---CcchhhhcCCCCceEeccCCcceecCh-hhhcCCCcce
Q 038441 79 TGLL-LNLKDWQYLESLPSTINGLKSFKILNLSSCSKLE---NVPENLGKVESLEELDISRTAIRQLPT-SIFLLKNLKA 153 (169)
Q Consensus 79 ~~L~-l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~ 153 (169)
..|+ +.+++|+........+..+++|++|+++.|.... +-...|.++++|+.|++.+|++..+|. +|.++.+|++
T Consensus 341 ~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~ 420 (873)
T KOG4194|consen 341 SQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEH 420 (873)
T ss_pred HHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccce
Confidence 8899 9999985444344577789999999999843322 223357789999999999999999998 8899999999
Q ss_pred EEcccccccccccC
Q 038441 154 VDHYHLHHGICASL 167 (169)
Q Consensus 154 L~~~~l~~~~~~~l 167 (169)
|+ +.+|++.+|
T Consensus 421 Ld---L~~NaiaSI 431 (873)
T KOG4194|consen 421 LD---LGDNAIASI 431 (873)
T ss_pred ec---CCCCcceee
Confidence 99 777776654
No 5
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.59 E-value=5.1e-17 Score=107.71 Aligned_cols=135 Identities=27% Similarity=0.376 Sum_probs=119.0
Q ss_pred CCCCcEEeeCCccccccCchhhcCCCCccEEEecCCCCCCCCCCCCccccc---cCCCCccEEEeeCCcCc--ccccccc
Q 038441 2 LKFPSTLNLFGLLKFRLFPEIMGRMEHLLVLRLLGTAIRGLPICLKLEKFS---KSMKSLTMLILDGTTIR--ELPLSVE 76 (169)
Q Consensus 2 l~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~---~~~~~L~~L~l~~~~~~--~lp~~~~ 76 (169)
+++|+.|++++ +.++++|..++.+++|+.|++..|.+. .+| +.++.|+.|++.+|++. .+|..|+
T Consensus 55 l~nlevln~~n-nqie~lp~~issl~klr~lnvgmnrl~---------~lprgfgs~p~levldltynnl~e~~lpgnff 124 (264)
T KOG0617|consen 55 LKNLEVLNLSN-NQIEELPTSISSLPKLRILNVGMNRLN---------ILPRGFGSFPALEVLDLTYNNLNENSLPGNFF 124 (264)
T ss_pred hhhhhhhhccc-chhhhcChhhhhchhhhheecchhhhh---------cCccccCCCchhhhhhccccccccccCCcchh
Confidence 57899999987 679999999999999999999995544 455 66788999999999887 6798899
Q ss_pred cccceE-EEecccccCCccccccccCCccCEEecCCCCCCCCcchhhhcCCCCceEeccCCcceecChhhhcC
Q 038441 77 LLTGLL-LNLKDWQYLESLPSTINGLKSFKILNLSSCSKLENVPENLGKVESLEELDISRTAIRQLPTSIFLL 148 (169)
Q Consensus 77 ~~~~L~-l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l 148 (169)
-++.|+ +.+++| -...+|+.++.+++|+.|.++. +.+-.+|.+++.+..|+.|++.+|.++.+|..++.+
T Consensus 125 ~m~tlralyl~dn-dfe~lp~dvg~lt~lqil~lrd-ndll~lpkeig~lt~lrelhiqgnrl~vlppel~~l 195 (264)
T KOG0617|consen 125 YMTTLRALYLGDN-DFEILPPDVGKLTNLQILSLRD-NDLLSLPKEIGDLTRLRELHIQGNRLTVLPPELANL 195 (264)
T ss_pred HHHHHHHHHhcCC-CcccCChhhhhhcceeEEeecc-CchhhCcHHHHHHHHHHHHhcccceeeecChhhhhh
Confidence 999999 999997 6778899999999999999998 677899999999999999999999999998876544
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.55 E-value=4.5e-16 Score=120.87 Aligned_cols=146 Identities=28% Similarity=0.401 Sum_probs=126.1
Q ss_pred CCCCcEEeeCCccccccCchhhcCCCCccEEEecCCCCCCCCCCCCccccc---cCCCCccEEEeeCCcCcccccccccc
Q 038441 2 LKFPSTLNLFGLLKFRLFPEIMGRMEHLLVLRLLGTAIRGLPICLKLEKFS---KSMKSLTMLILDGTTIRELPLSVELL 78 (169)
Q Consensus 2 l~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~---~~~~~L~~L~l~~~~~~~lp~~~~~~ 78 (169)
+.+|..++++. +++..+|+.+..+++|++|++++|.++. +. ..|.+++.|+++.|+++.+|..+..+
T Consensus 221 l~NL~dvDlS~-N~Lp~vPecly~l~~LrrLNLS~N~ite---------L~~~~~~W~~lEtLNlSrNQLt~LP~avcKL 290 (1255)
T KOG0444|consen 221 LHNLRDVDLSE-NNLPIVPECLYKLRNLRRLNLSGNKITE---------LNMTEGEWENLETLNLSRNQLTVLPDAVCKL 290 (1255)
T ss_pred hhhhhhccccc-cCCCcchHHHhhhhhhheeccCcCceee---------eeccHHHHhhhhhhccccchhccchHHHhhh
Confidence 56777788876 5688888888889999999999955544 43 67889999999999999999999999
Q ss_pred cceE-EEecccccC-CccccccccCCccCEEecCCCCCCCCcchhhhcCCCCceEeccCCcceecChhhhcCCCcceEEc
Q 038441 79 TGLL-LNLKDWQYL-ESLPSTINGLKSFKILNLSSCSKLENVPENLGKVESLEELDISRTAIRQLPTSIFLLKNLKAVDH 156 (169)
Q Consensus 79 ~~L~-l~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~~ 156 (169)
+.|+ +.+.+|... ..+|.+++.+.+|+.+..++ |.+.-+|+.++.|..|+.|.+++|++..+|+++.-++.++.||+
T Consensus 291 ~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aan-N~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDl 369 (1255)
T KOG0444|consen 291 TKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAAN-NKLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDL 369 (1255)
T ss_pred HHHHHHHhccCcccccCCccchhhhhhhHHHHhhc-cccccCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeec
Confidence 9999 988887543 35789999999999998886 78899999999999999999999999999999999999999994
Q ss_pred cc
Q 038441 157 YH 158 (169)
Q Consensus 157 ~~ 158 (169)
..
T Consensus 370 re 371 (1255)
T KOG0444|consen 370 RE 371 (1255)
T ss_pred cC
Confidence 43
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.51 E-value=3.7e-16 Score=115.36 Aligned_cols=157 Identities=27% Similarity=0.387 Sum_probs=115.3
Q ss_pred cEEeeCCccccccCchhhcCCCCccEEEecCCCCCCCC--------------CCCCccccc---cCCCCccEEEeeCCcC
Q 038441 6 STLNLFGLLKFRLFPEIMGRMEHLLVLRLLGTAIRGLP--------------ICLKLEKFS---KSMKSLTMLILDGTTI 68 (169)
Q Consensus 6 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--------------~~~~l~~~~---~~~~~L~~L~l~~~~~ 68 (169)
..++.++ +....+|+.++.+-.++.++-..|.+..+| ..+.++++| -.++.|++++...|-+
T Consensus 117 ~~l~~s~-n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L 195 (565)
T KOG0472|consen 117 VKLDCSS-NELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLL 195 (565)
T ss_pred hhhhccc-cceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhh
Confidence 3344444 234444555555555555555555554433 134555566 3377788888888888
Q ss_pred cccccccccccceE-EEecccccCCccccccccCCccCEEecCCCCCCCCcchhhh-cCCCCceEeccCCcceecChhhh
Q 038441 69 RELPLSVELLTGLL-LNLKDWQYLESLPSTINGLKSFKILNLSSCSKLENVPENLG-KVESLEELDISRTAIRQLPTSIF 146 (169)
Q Consensus 69 ~~lp~~~~~~~~L~-l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~ 146 (169)
+.+|+.++.+.+|. +++..| .+..+| .|.+|..|.+++++. +.+..+|.+++ ++.++.+||+..|+++++|+.++
T Consensus 196 ~tlP~~lg~l~~L~~LyL~~N-ki~~lP-ef~gcs~L~Elh~g~-N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~c 272 (565)
T KOG0472|consen 196 ETLPPELGGLESLELLYLRRN-KIRFLP-EFPGCSLLKELHVGE-NQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEIC 272 (565)
T ss_pred hcCChhhcchhhhHHHHhhhc-ccccCC-CCCccHHHHHHHhcc-cHHHhhHHHHhcccccceeeeccccccccCchHHH
Confidence 88999999888888 888887 666777 678888888888887 77888888776 88899999999999999999999
Q ss_pred cCCCcceEEcccccccccccCCC
Q 038441 147 LLKNLKAVDHYHLHHGICASLPI 169 (169)
Q Consensus 147 ~l~~L~~L~~~~l~~~~~~~l~~ 169 (169)
.+.+|..|| ++.+.+.++|.
T Consensus 273 lLrsL~rLD---lSNN~is~Lp~ 292 (565)
T KOG0472|consen 273 LLRSLERLD---LSNNDISSLPY 292 (565)
T ss_pred Hhhhhhhhc---ccCCccccCCc
Confidence 899999999 78888888773
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.48 E-value=6.1e-15 Score=114.72 Aligned_cols=150 Identities=25% Similarity=0.350 Sum_probs=72.4
Q ss_pred CcEEeeCCccccccCchhhcCCCCccEEEecCCCCCCCCCCCCccccc----cCCCCccEEEeeCCcCcccccccccccc
Q 038441 5 PSTLNLFGLLKFRLFPEIMGRMEHLLVLRLLGTAIRGLPICLKLEKFS----KSMKSLTMLILDGTTIRELPLSVELLTG 80 (169)
Q Consensus 5 l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~----~~~~~L~~L~l~~~~~~~lp~~~~~~~~ 80 (169)
|+.|++++ +.++++|..+.+-++.-+|++++ +.|+.+| ..+.-|-+|++++|.+..+|+.+..+..
T Consensus 105 Lt~lDLSh-NqL~EvP~~LE~AKn~iVLNLS~---------N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~ 174 (1255)
T KOG0444|consen 105 LTILDLSH-NQLREVPTNLEYAKNSIVLNLSY---------NNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSM 174 (1255)
T ss_pred ceeeecch-hhhhhcchhhhhhcCcEEEEccc---------CccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhh
Confidence 33444444 23444444444444444444444 3444444 3334444555666655555555555555
Q ss_pred eE-EEecccccCC-------------------------ccccccccCCccCEEecCCCCCCCCcchhhhcCCCCceEecc
Q 038441 81 LL-LNLKDWQYLE-------------------------SLPSTINGLKSFKILNLSSCSKLENVPENLGKVESLEELDIS 134 (169)
Q Consensus 81 L~-l~l~~~~~~~-------------------------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 134 (169)
|+ +++++|.... .+|..+..+.+|+.++++. |.+..+|+.+..+.+|+.|+++
T Consensus 175 LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~-N~Lp~vPecly~l~~LrrLNLS 253 (1255)
T KOG0444|consen 175 LQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE-NNLPIVPECLYKLRNLRRLNLS 253 (1255)
T ss_pred hhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccc-cCCCcchHHHhhhhhhheeccC
Confidence 55 5555542211 2334444444444455543 4444455555555555555555
Q ss_pred CCcceecChhhhcCCCcceEEcccccccccccCC
Q 038441 135 RTAIRQLPTSIFLLKNLKAVDHYHLHHGICASLP 168 (169)
Q Consensus 135 ~n~l~~~~~~~~~l~~L~~L~~~~l~~~~~~~l~ 168 (169)
+|.++++....+.+.++++|+ ++.|.+..+|
T Consensus 254 ~N~iteL~~~~~~W~~lEtLN---lSrNQLt~LP 284 (1255)
T KOG0444|consen 254 GNKITELNMTEGEWENLETLN---LSRNQLTVLP 284 (1255)
T ss_pred cCceeeeeccHHHHhhhhhhc---cccchhccch
Confidence 555555544444555555555 5555555544
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.48 E-value=4.5e-13 Score=113.76 Aligned_cols=153 Identities=29% Similarity=0.430 Sum_probs=82.5
Q ss_pred CCCCcEEeeCCccccccCchhhcCCCCccEEEecCCC-CCCCC--------------CCCCccccccCCCCccEEEeeCC
Q 038441 2 LKFPSTLNLFGLLKFRLFPEIMGRMEHLLVLRLLGTA-IRGLP--------------ICLKLEKFSKSMKSLTMLILDGT 66 (169)
Q Consensus 2 l~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~--------------~~~~l~~~~~~~~~L~~L~l~~~ 66 (169)
+.+|+.|++.+|..+..+|..+..+++|+.|++++|. +..+| .|..++.+|....+|++|++++|
T Consensus 656 l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n 735 (1153)
T PLN03210 656 ATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDET 735 (1153)
T ss_pred CCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeecCCC
Confidence 3466677777777677777666677777777776632 22211 12223333322334455555555
Q ss_pred cCccccccc------------------------------ccccceE-EEecccccCCccccccccCCccCEEecCCCCCC
Q 038441 67 TIRELPLSV------------------------------ELLTGLL-LNLKDWQYLESLPSTINGLKSFKILNLSSCSKL 115 (169)
Q Consensus 67 ~~~~lp~~~------------------------------~~~~~L~-l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 115 (169)
.+..+|..+ ...++|+ +++++|.....+|..++++++|+.|++++|+.+
T Consensus 736 ~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L 815 (1153)
T PLN03210 736 AIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINL 815 (1153)
T ss_pred ccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCc
Confidence 544444321 0012455 555555445555655666666666666665555
Q ss_pred CCcchhhhcC---------------------CCCceEeccCCcceecChhhhcCCCcceEE
Q 038441 116 ENVPENLGKV---------------------ESLEELDISRTAIRQLPTSIFLLKNLKAVD 155 (169)
Q Consensus 116 ~~~~~~~~~l---------------------~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~ 155 (169)
..+|..+ ++ .+|+.|++++|.+..+|..+..+++|+.|+
T Consensus 816 ~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~ 875 (1153)
T PLN03210 816 ETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLD 875 (1153)
T ss_pred CeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEE
Confidence 5444332 22 345566666666666776667777777776
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.46 E-value=1.3e-14 Score=107.27 Aligned_cols=159 Identities=21% Similarity=0.308 Sum_probs=120.8
Q ss_pred CCcEEeeCCccccccCchhhcCCCC---ccEEEecCCCCCCCC---------------CCCCccccc---cCCCCccEEE
Q 038441 4 FPSTLNLFGLLKFRLFPEIMGRMEH---LLVLRLLGTAIRGLP---------------ICLKLEKFS---KSMKSLTMLI 62 (169)
Q Consensus 4 ~l~~L~l~~~~~~~~~~~~~~~l~~---L~~L~l~~n~l~~~~---------------~~~~l~~~~---~~~~~L~~L~ 62 (169)
..+.|++++ ..++.+|+.+..-.+ +..+++++|++..+| ..+.+...| ..++++..|+
T Consensus 363 ~tkiL~~s~-~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~ 441 (565)
T KOG0472|consen 363 TTKILDVSD-KQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLD 441 (565)
T ss_pred hhhhhcccc-cccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeee
Confidence 345566766 567788887655544 777888888887765 123444444 7788899999
Q ss_pred eeCCcCcccccccccccceE-EEecccccCCccccccccCCccCEEecCCCCCCCCcchh-hhcCCCCceEeccCCccee
Q 038441 63 LDGTTIRELPLSVELLTGLL-LNLKDWQYLESLPSTINGLKSFKILNLSSCSKLENVPEN-LGKVESLEELDISRTAIRQ 140 (169)
Q Consensus 63 l~~~~~~~lp~~~~~~~~L~-l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~ 140 (169)
+++|-+..+|.+++.+-.|+ ++++.| ....+|..+.....++.+..++ +.++.++.. +.++..|..||+..|.+..
T Consensus 442 L~NN~Ln~LP~e~~~lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtllas~-nqi~~vd~~~l~nm~nL~tLDL~nNdlq~ 519 (565)
T KOG0472|consen 442 LSNNLLNDLPEEMGSLVRLQTLNLSFN-RFRMLPECLYELQTLETLLASN-NQIGSVDPSGLKNMRNLTTLDLQNNDLQQ 519 (565)
T ss_pred cccchhhhcchhhhhhhhhheeccccc-ccccchHHHhhHHHHHHHHhcc-ccccccChHHhhhhhhcceeccCCCchhh
Confidence 99999999999999888899 999987 5666777666666666555554 677777654 8889999999999999999
Q ss_pred cChhhhcCCCcceEEcccccccccccCCC
Q 038441 141 LPTSIFLLKNLKAVDHYHLHHGICASLPI 169 (169)
Q Consensus 141 ~~~~~~~l~~L~~L~~~~l~~~~~~~l~~ 169 (169)
+|..+++++++++|+ +.+|-|. .||
T Consensus 520 IPp~LgnmtnL~hLe---L~gNpfr-~Pr 544 (565)
T KOG0472|consen 520 IPPILGNMTNLRHLE---LDGNPFR-QPR 544 (565)
T ss_pred CChhhccccceeEEE---ecCCccC-CCH
Confidence 999999999999999 7777776 543
No 11
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.40 E-value=1.9e-13 Score=105.39 Aligned_cols=34 Identities=38% Similarity=0.464 Sum_probs=14.2
Q ss_pred hhcCCCCceEeccCCcceec-ChhhhcCCCcceEE
Q 038441 122 LGKVESLEELDISRTAIRQL-PTSIFLLKNLKAVD 155 (169)
Q Consensus 122 ~~~l~~L~~L~l~~n~l~~~-~~~~~~l~~L~~L~ 155 (169)
+.++.+|++|+++.|.|..+ +++|...+.|++|+
T Consensus 289 lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~Ld 323 (873)
T KOG4194|consen 289 LFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELD 323 (873)
T ss_pred ccccchhhhhccchhhhheeecchhhhcccceeEe
Confidence 33444444444444444422 22344444444444
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.37 E-value=5.8e-12 Score=107.13 Aligned_cols=99 Identities=30% Similarity=0.405 Sum_probs=45.6
Q ss_pred CCcEEeeCCccccccCchhhcCCCCccEEEecCCCCCCCCCCCCccccc--cCCCCccEEEeeCC-cCcccccccccccc
Q 038441 4 FPSTLNLFGLLKFRLFPEIMGRMEHLLVLRLLGTAIRGLPICLKLEKFS--KSMKSLTMLILDGT-TIRELPLSVELLTG 80 (169)
Q Consensus 4 ~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~--~~~~~L~~L~l~~~-~~~~lp~~~~~~~~ 80 (169)
+|+.|++.++ .+..++..+..+++|+.++++++ ..++.+| ..+++|+.|++++| .+..+|..++.+++
T Consensus 612 ~L~~L~L~~s-~l~~L~~~~~~l~~Lk~L~Ls~~--------~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~ 682 (1153)
T PLN03210 612 NLVKLQMQGS-KLEKLWDGVHSLTGLRNIDLRGS--------KNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNK 682 (1153)
T ss_pred CCcEEECcCc-cccccccccccCCCCCEEECCCC--------CCcCcCCccccCCcccEEEecCCCCccccchhhhccCC
Confidence 4455555543 24444544455555555555542 2233333 33445555555554 33344544555555
Q ss_pred eE-EEecccccCCccccccccCCccCEEecCCC
Q 038441 81 LL-LNLKDWQYLESLPSTINGLKSFKILNLSSC 112 (169)
Q Consensus 81 L~-l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 112 (169)
|+ +++++|+....+|..+ ++++|+.|++++|
T Consensus 683 L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc 714 (1153)
T PLN03210 683 LEDLDMSRCENLEILPTGI-NLKSLYRLNLSGC 714 (1153)
T ss_pred CCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCC
Confidence 55 5555444444444332 3344444444443
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.33 E-value=1.3e-13 Score=110.58 Aligned_cols=147 Identities=27% Similarity=0.348 Sum_probs=111.2
Q ss_pred CCCCcEEeeCCccccccCchhh--------------------------cCCCCccEEEecCCCCCCCCCCCCccccccCC
Q 038441 2 LKFPSTLNLFGLLKFRLFPEIM--------------------------GRMEHLLVLRLLGTAIRGLPICLKLEKFSKSM 55 (169)
Q Consensus 2 l~~l~~L~l~~~~~~~~~~~~~--------------------------~~l~~L~~L~l~~n~l~~~~~~~~l~~~~~~~ 55 (169)
++.|+.|++..+ .+.++|+.+ ..++.|+.|++.+|.+++ +.+..+ .++
T Consensus 309 ~~sL~tLdL~~N-~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd----~c~p~l-~~~ 382 (1081)
T KOG0618|consen 309 LKSLRTLDLQSN-NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTD----SCFPVL-VNF 382 (1081)
T ss_pred cceeeeeeehhc-cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccc----cchhhh-ccc
Confidence 577888888874 466666532 123445556666666665 233222 778
Q ss_pred CCccEEEeeCCcCcccccc-cccccceE-EEecccccCCccccccccCCccCEEecCCCCCCCCcchhhhcCCCCceEec
Q 038441 56 KSLTMLILDGTTIRELPLS-VELLTGLL-LNLKDWQYLESLPSTINGLKSFKILNLSSCSKLENVPENLGKVESLEELDI 133 (169)
Q Consensus 56 ~~L~~L~l~~~~~~~lp~~-~~~~~~L~-l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 133 (169)
++|+.|++++|.+..+|.. +.++..|+ +++++| ....+|..+..+..|++|...+ |.+..+| .+..++.|+.+|+
T Consensus 383 ~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGN-kL~~Lp~tva~~~~L~tL~ahs-N~l~~fP-e~~~l~qL~~lDl 459 (1081)
T KOG0618|consen 383 KHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGN-KLTTLPDTVANLGRLHTLRAHS-NQLLSFP-ELAQLPQLKVLDL 459 (1081)
T ss_pred cceeeeeecccccccCCHHHHhchHHhHHHhcccc-hhhhhhHHHHhhhhhHHHhhcC-Cceeech-hhhhcCcceEEec
Confidence 8999999999999999886 78888999 999997 7888898888999999998876 7888898 7889999999999
Q ss_pred cCCccee--cChhhhcCCCcceEEccc
Q 038441 134 SRTAIRQ--LPTSIFLLKNLKAVDHYH 158 (169)
Q Consensus 134 ~~n~l~~--~~~~~~~l~~L~~L~~~~ 158 (169)
++|+++. +|.... .++|++||+++
T Consensus 460 S~N~L~~~~l~~~~p-~p~LkyLdlSG 485 (1081)
T KOG0618|consen 460 SCNNLSEVTLPEALP-SPNLKYLDLSG 485 (1081)
T ss_pred ccchhhhhhhhhhCC-CcccceeeccC
Confidence 9999983 443332 37899999333
No 14
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.32 E-value=9.6e-12 Score=100.92 Aligned_cols=58 Identities=26% Similarity=0.492 Sum_probs=30.5
Q ss_pred ccCEEecCCCCCCCCcchhhhcCCCCceEeccCCcceecChhhhcCCCcceEEcccccccccccCC
Q 038441 103 SFKILNLSSCSKLENVPENLGKVESLEELDISRTAIRQLPTSIFLLKNLKAVDHYHLHHGICASLP 168 (169)
Q Consensus 103 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~~~~l~~~~~~~l~ 168 (169)
+|+.|++++ +.+..+|..+. ++|+.|++++|.++.+|..+. +.|+.|+ ++.|.+..+|
T Consensus 326 sL~~L~Ls~-N~Lt~LP~~l~--~sL~~L~Ls~N~L~~LP~~lp--~~L~~Ld---Ls~N~Lt~LP 383 (754)
T PRK15370 326 GLKTLEAGE-NALTSLPASLP--PELQVLDVSKNQITVLPETLP--PTITTLD---VSRNALTNLP 383 (754)
T ss_pred cceeccccC-CccccCChhhc--CcccEEECCCCCCCcCChhhc--CCcCEEE---CCCCcCCCCC
Confidence 455555555 23444554332 466666666666666655432 4566666 4444444444
No 15
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.27 E-value=1.3e-13 Score=105.75 Aligned_cols=145 Identities=28% Similarity=0.424 Sum_probs=104.1
Q ss_pred cEEeeCCccccccCchhhcCCCCccEEEecCCCCCCCCCCCCccccc--cCCCCccEEEeeCCcCcccccccccccceE-
Q 038441 6 STLNLFGLLKFRLFPEIMGRMEHLLVLRLLGTAIRGLPICLKLEKFS--KSMKSLTMLILDGTTIRELPLSVELLTGLL- 82 (169)
Q Consensus 6 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~--~~~~~L~~L~l~~~~~~~lp~~~~~~~~L~- 82 (169)
+.+.++. +.+..+|..+..+..|++++++.|.++ .+| -..--|+.|-+++|+++.+|+.++....|.
T Consensus 101 e~liLy~-n~~r~ip~~i~~L~~lt~l~ls~NqlS---------~lp~~lC~lpLkvli~sNNkl~~lp~~ig~~~tl~~ 170 (722)
T KOG0532|consen 101 ESLILYH-NCIRTIPEAICNLEALTFLDLSSNQLS---------HLPDGLCDLPLKVLIVSNNKLTSLPEEIGLLPTLAH 170 (722)
T ss_pred HHHHHHh-ccceecchhhhhhhHHHHhhhccchhh---------cCChhhhcCcceeEEEecCccccCCcccccchhHHH
Confidence 3344444 335556666677777777777774443 344 112237888888888888888888777788
Q ss_pred EEecccccCCccccccccCCccCEEecCCCCCCCCcchhhhcCCCCceEeccCCcceecChhhhcCCCcceEEccccccc
Q 038441 83 LNLKDWQYLESLPSTINGLKSFKILNLSSCSKLENVPENLGKVESLEELDISRTAIRQLPTSIFLLKNLKAVDHYHLHHG 162 (169)
Q Consensus 83 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~~~~l~~~ 162 (169)
++++.| .+..+|..++++.+|+.|.+.. |.+..+|.+++.+ .|..||+++|+++.+|-.|.++++|++|- +..|
T Consensus 171 ld~s~n-ei~slpsql~~l~slr~l~vrR-n~l~~lp~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~---LenN 244 (722)
T KOG0532|consen 171 LDVSKN-EIQSLPSQLGYLTSLRDLNVRR-NHLEDLPEELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQ---LENN 244 (722)
T ss_pred hhhhhh-hhhhchHHhhhHHHHHHHHHhh-hhhhhCCHHHhCC-ceeeeecccCceeecchhhhhhhhheeee---eccC
Confidence 888876 5666777778888888888877 6677888888744 57888999999999988888888888887 5555
Q ss_pred cccc
Q 038441 163 ICAS 166 (169)
Q Consensus 163 ~~~~ 166 (169)
-+++
T Consensus 245 PLqS 248 (722)
T KOG0532|consen 245 PLQS 248 (722)
T ss_pred CCCC
Confidence 5544
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.27 E-value=2e-11 Score=99.10 Aligned_cols=142 Identities=23% Similarity=0.348 Sum_probs=73.7
Q ss_pred CCcEEeeCCccccccCchhhcCCCCccEEEecCCCCCCCCCCCCccccccCCCCccEEEeeCCcCcccccccccccceE-
Q 038441 4 FPSTLNLFGLLKFRLFPEIMGRMEHLLVLRLLGTAIRGLPICLKLEKFSKSMKSLTMLILDGTTIRELPLSVELLTGLL- 82 (169)
Q Consensus 4 ~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~lp~~~~~~~~L~- 82 (169)
.++.|++++| .++.+|..+ .++|+.|++++|.++.+|. ....+|+.|++++|.++.+|..+. .+|+
T Consensus 200 ~L~~L~Ls~N-~LtsLP~~l--~~nL~~L~Ls~N~LtsLP~--------~l~~~L~~L~Ls~N~L~~LP~~l~--s~L~~ 266 (754)
T PRK15370 200 QITTLILDNN-ELKSLPENL--QGNIKTLYANSNQLTSIPA--------TLPDTIQEMELSINRITELPERLP--SALQS 266 (754)
T ss_pred CCcEEEecCC-CCCcCChhh--ccCCCEEECCCCccccCCh--------hhhccccEEECcCCccCcCChhHh--CCCCE
Confidence 4566777664 455666544 2467777777755554321 112245555555555555544432 2445
Q ss_pred EEecccccCCccccccccCCccCEEecCCC--------------------CCCCCcchhhhcCCCCceEeccCCcceecC
Q 038441 83 LNLKDWQYLESLPSTINGLKSFKILNLSSC--------------------SKLENVPENLGKVESLEELDISRTAIRQLP 142 (169)
Q Consensus 83 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~--------------------~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 142 (169)
+++++| .+..+|..+. .+|++|++++| +.+..+|..+ .++|+.|++++|.++.+|
T Consensus 267 L~Ls~N-~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~Lt~LP 341 (754)
T PRK15370 267 LDLFHN-KISCLPENLP--EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETL--PPGLKTLEAGENALTSLP 341 (754)
T ss_pred EECcCC-ccCccccccC--CCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccc--cccceeccccCCccccCC
Confidence 555544 2233443221 24555555442 2333333322 246777777777777776
Q ss_pred hhhhcCCCcceEEcccccccccccCC
Q 038441 143 TSIFLLKNLKAVDHYHLHHGICASLP 168 (169)
Q Consensus 143 ~~~~~l~~L~~L~~~~l~~~~~~~l~ 168 (169)
..+. ++|+.|+ ++.+.+..+|
T Consensus 342 ~~l~--~sL~~L~---Ls~N~L~~LP 362 (754)
T PRK15370 342 ASLP--PELQVLD---VSKNQITVLP 362 (754)
T ss_pred hhhc--CcccEEE---CCCCCCCcCC
Confidence 6443 5777787 5555565554
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.25 E-value=5.2e-11 Score=96.62 Aligned_cols=127 Identities=24% Similarity=0.283 Sum_probs=70.7
Q ss_pred CCccEEEecCCCCCCCCC-----------CCCccccccCCCCccEEEeeCCcCccccccccc-----------------c
Q 038441 27 EHLLVLRLLGTAIRGLPI-----------CLKLEKFSKSMKSLTMLILDGTTIRELPLSVEL-----------------L 78 (169)
Q Consensus 27 ~~L~~L~l~~n~l~~~~~-----------~~~l~~~~~~~~~L~~L~l~~~~~~~lp~~~~~-----------------~ 78 (169)
++|++|++++|.++.++. .+.++.+|....+|++|++++|+++.+|..... .
T Consensus 302 ~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~LP~lp~~L~~L~Ls~N~L~~LP~l~ 381 (788)
T PRK15387 302 PGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALP 381 (788)
T ss_pred cccceeECCCCccccCCCCcccccccccccCccccccccccccceEecCCCccCCCCCCCcccceehhhccccccCcccc
Confidence 456667777766665431 122333332224567777777777665532111 0
Q ss_pred cceE-EEecccccCCccccccccCCccCEEecCCCCCCCCcchhhhcCCCCceEeccCCcceecChhhhcCCCcceEEcc
Q 038441 79 TGLL-LNLKDWQYLESLPSTINGLKSFKILNLSSCSKLENVPENLGKVESLEELDISRTAIRQLPTSIFLLKNLKAVDHY 157 (169)
Q Consensus 79 ~~L~-l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~~~ 157 (169)
.+|+ +++++| .+..+|.. .++|+.|++++ +.+..+|.. ...|+.|++++|.++.+|..+..+++++.++
T Consensus 382 ~~L~~LdLs~N-~Lt~LP~l---~s~L~~LdLS~-N~LssIP~l---~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~Ld-- 451 (788)
T PRK15387 382 SGLKELIVSGN-RLTSLPVL---PSELKELMVSG-NRLTSLPML---PSGLLSLSVYRNQLTRLPESLIHLSSETTVN-- 451 (788)
T ss_pred cccceEEecCC-cccCCCCc---ccCCCEEEccC-CcCCCCCcc---hhhhhhhhhccCcccccChHHhhccCCCeEE--
Confidence 1344 444444 22233321 23456666665 345555542 2356778888888888888888888888888
Q ss_pred ccccccc
Q 038441 158 HLHHGIC 164 (169)
Q Consensus 158 ~l~~~~~ 164 (169)
+++|.+
T Consensus 452 -Ls~N~L 457 (788)
T PRK15387 452 -LEGNPL 457 (788)
T ss_pred -CCCCCC
Confidence 444444
No 18
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.21 E-value=2.4e-11 Score=82.15 Aligned_cols=123 Identities=24% Similarity=0.367 Sum_probs=49.0
Q ss_pred cCCCCccEEEecCCCCCCCCCCCCccccccCCCCccEEEeeCCcCcccccccccccceE-EEecccccCCcccccc-ccC
Q 038441 24 GRMEHLLVLRLLGTAIRGLPICLKLEKFSKSMKSLTMLILDGTTIRELPLSVELLTGLL-LNLKDWQYLESLPSTI-NGL 101 (169)
Q Consensus 24 ~~l~~L~~L~l~~n~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~lp~~~~~~~~L~-l~l~~~~~~~~~~~~~-~~~ 101 (169)
.+...+++|++++|.++. ++.+...+.+|+.|++++|.++++. .+..++.|+ +++++| .+..+.+.+ ..+
T Consensus 16 ~n~~~~~~L~L~~n~I~~------Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N-~I~~i~~~l~~~l 87 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQIST------IENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNN-RISSISEGLDKNL 87 (175)
T ss_dssp --------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-
T ss_pred cccccccccccccccccc------ccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCC-CCCccccchHHhC
Confidence 345567889999966644 3333245778899999999988874 567788899 999987 455554444 368
Q ss_pred CccCEEecCCCCCCCCcc--hhhhcCCCCceEeccCCcceecCh----hhhcCCCcceEE
Q 038441 102 KSFKILNLSSCSKLENVP--ENLGKVESLEELDISRTAIRQLPT----SIFLLKNLKAVD 155 (169)
Q Consensus 102 ~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~----~~~~l~~L~~L~ 155 (169)
++|++|++++ |.+..+. ..+..+++|++|++.+|.+..-+. .+..+++|+.||
T Consensus 88 p~L~~L~L~~-N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 88 PNLQELYLSN-NKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp TT--EEE-TT-S---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred CcCCEEECcC-CcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 8999999987 5555443 346788899999999998885443 357889999998
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.20 E-value=6.8e-13 Score=106.60 Aligned_cols=154 Identities=22% Similarity=0.309 Sum_probs=122.5
Q ss_pred cEEeeCCccccccCchhhcCCCCccEEEecCCCCCCCCC----------------CCCccccc----cCCCCccEEEeeC
Q 038441 6 STLNLFGLLKFRLFPEIMGRMEHLLVLRLLGTAIRGLPI----------------CLKLEKFS----KSMKSLTMLILDG 65 (169)
Q Consensus 6 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----------------~~~l~~~~----~~~~~L~~L~l~~ 65 (169)
++|+... +.+..+|+....++.|+.|++..|.+...|. |+.+...| ...+.|+.|++.+
T Consensus 290 ~~l~~~~-nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lylan 368 (1081)
T KOG0618|consen 290 VSLSAAY-NELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLAN 368 (1081)
T ss_pred HHHHhhh-hhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhc
Confidence 3344433 2356667777779999999999999887652 45555555 4456789999999
Q ss_pred CcCc-ccccccccccceE-EEecccccCCcccc-ccccCCccCEEecCCCCCCCCcchhhhcCCCCceEeccCCcceecC
Q 038441 66 TTIR-ELPLSVELLTGLL-LNLKDWQYLESLPS-TINGLKSFKILNLSSCSKLENVPENLGKVESLEELDISRTAIRQLP 142 (169)
Q Consensus 66 ~~~~-~lp~~~~~~~~L~-l~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 142 (169)
|.++ ..-+-+-.+.+|+ +++++| .+..+|. .+.++..|++|+++| |.++.+|..+..+..|++|...+|.+..+|
T Consensus 369 N~Ltd~c~p~l~~~~hLKVLhLsyN-rL~~fpas~~~kle~LeeL~LSG-NkL~~Lp~tva~~~~L~tL~ahsN~l~~fP 446 (1081)
T KOG0618|consen 369 NHLTDSCFPVLVNFKHLKVLHLSYN-RLNSFPASKLRKLEELEELNLSG-NKLTTLPDTVANLGRLHTLRAHSNQLLSFP 446 (1081)
T ss_pred Ccccccchhhhccccceeeeeeccc-ccccCCHHHHhchHHhHHHhccc-chhhhhhHHHHhhhhhHHHhhcCCceeech
Confidence 9998 5666678889999 999998 6666775 667889999999999 789999999999999999999999999999
Q ss_pred hhhhcCCCcceEE--cccccccc
Q 038441 143 TSIFLLKNLKAVD--HYHLHHGI 163 (169)
Q Consensus 143 ~~~~~l~~L~~L~--~~~l~~~~ 163 (169)
.+..++.|+.+| |+.++...
T Consensus 447 -e~~~l~qL~~lDlS~N~L~~~~ 468 (1081)
T KOG0618|consen 447 -ELAQLPQLKVLDLSCNNLSEVT 468 (1081)
T ss_pred -hhhhcCcceEEecccchhhhhh
Confidence 678899999999 55554433
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.14 E-value=4.2e-11 Score=88.57 Aligned_cols=37 Identities=14% Similarity=-0.074 Sum_probs=17.2
Q ss_pred CCcEEeeCCccccccCchhhcCCCC---ccEEEecCCCCC
Q 038441 4 FPSTLNLFGLLKFRLFPEIMGRMEH---LLVLRLLGTAIR 40 (169)
Q Consensus 4 ~l~~L~l~~~~~~~~~~~~~~~l~~---L~~L~l~~n~l~ 40 (169)
.|++|++++|......+..+..+.. |++|++++|.++
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~ 121 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLG 121 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccc
Confidence 4555555555433333333333333 555555554443
No 21
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.12 E-value=4.7e-10 Score=91.21 Aligned_cols=55 Identities=18% Similarity=0.323 Sum_probs=31.0
Q ss_pred cEEeeCCccccccCchhhcCCCCccEEEecCCCCCCCCCCCCccccccCCCCccEEEeeCCcCcccc
Q 038441 6 STLNLFGLLKFRLFPEIMGRMEHLLVLRLLGTAIRGLPICLKLEKFSKSMKSLTMLILDGTTIRELP 72 (169)
Q Consensus 6 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~lp 72 (169)
..|+++++ .++.+|+.+. ++|+.|++.+|.++. +|...++|++|++++|+++.+|
T Consensus 204 ~~LdLs~~-~LtsLP~~l~--~~L~~L~L~~N~Lt~---------LP~lp~~Lk~LdLs~N~LtsLP 258 (788)
T PRK15387 204 AVLNVGES-GLTTLPDCLP--AHITTLVIPDNNLTS---------LPALPPELRTLEVSGNQLTSLP 258 (788)
T ss_pred cEEEcCCC-CCCcCCcchh--cCCCEEEccCCcCCC---------CCCCCCCCcEEEecCCccCccc
Confidence 45666664 4556666542 366777777744433 3333455666666666555554
No 22
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.11 E-value=1.1e-10 Score=78.90 Aligned_cols=120 Identities=24% Similarity=0.317 Sum_probs=50.7
Q ss_pred CCcEEeeCCccccccCchhhc-CCCCccEEEecCCCCCCCCCCCCccccccCCCCccEEEeeCCcCccccccc-ccccce
Q 038441 4 FPSTLNLFGLLKFRLFPEIMG-RMEHLLVLRLLGTAIRGLPICLKLEKFSKSMKSLTMLILDGTTIRELPLSV-ELLTGL 81 (169)
Q Consensus 4 ~l~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~lp~~~-~~~~~L 81 (169)
.++.|++.++. ++.+.. +. .+.+|+.|++++|.++.+ +.+ ..++.|+.|++++|.++.+.+.+ ..+++|
T Consensus 20 ~~~~L~L~~n~-I~~Ie~-L~~~l~~L~~L~Ls~N~I~~l------~~l-~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L 90 (175)
T PF14580_consen 20 KLRELNLRGNQ-ISTIEN-LGATLDKLEVLDLSNNQITKL------EGL-PGLPRLKTLDLSNNRISSISEGLDKNLPNL 90 (175)
T ss_dssp -----------------S---TT-TT--EEE-TTS--S--------TT-----TT--EEE--SS---S-CHHHHHH-TT-
T ss_pred ccccccccccc-cccccc-hhhhhcCCCEEECCCCCCccc------cCc-cChhhhhhcccCCCCCCccccchHHhCCcC
Confidence 46789998854 555543 44 578999999999766542 222 56789999999999999887665 468999
Q ss_pred E-EEecccccCCccc--cccccCCccCEEecCCCCCCCCcch----hhhcCCCCceEecc
Q 038441 82 L-LNLKDWQYLESLP--STINGLKSFKILNLSSCSKLENVPE----NLGKVESLEELDIS 134 (169)
Q Consensus 82 ~-l~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~l~~L~~L~l~ 134 (169)
+ +.+++|+ +..+. ..+..+++|+.|++.+ |.+...+. .+..+++|+.||-.
T Consensus 91 ~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~-NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 91 QELYLSNNK-ISDLNELEPLSSLPKLRVLSLEG-NPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -EEE-TTS----SCCCCGGGGG-TT--EEE-TT--GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred CEEECcCCc-CCChHHhHHHHcCCCcceeeccC-CcccchhhHHHHHHHHcChhheeCCE
Confidence 9 9999984 44333 3567889999999998 55554443 47789999999853
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.09 E-value=7.3e-11 Score=87.29 Aligned_cols=13 Identities=38% Similarity=0.312 Sum_probs=6.3
Q ss_pred CCCceEeccCCcc
Q 038441 126 ESLEELDISRTAI 138 (169)
Q Consensus 126 ~~L~~L~l~~n~l 138 (169)
..|+.+++++|.+
T Consensus 250 ~~L~~L~l~~n~i 262 (319)
T cd00116 250 ISLLTLSLSCNDI 262 (319)
T ss_pred CCceEEEccCCCC
Confidence 3445555555544
No 24
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.05 E-value=1.3e-10 Score=88.59 Aligned_cols=141 Identities=31% Similarity=0.447 Sum_probs=91.3
Q ss_pred CCcEEeeCCccccccCchhhcCCCCccEEEecCCCCCCCCCCCCccccc--c-CCCCccEEEeeCCcCcccccccccccc
Q 038441 4 FPSTLNLFGLLKFRLFPEIMGRMEHLLVLRLLGTAIRGLPICLKLEKFS--K-SMKSLTMLILDGTTIRELPLSVELLTG 80 (169)
Q Consensus 4 ~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~--~-~~~~L~~L~l~~~~~~~lp~~~~~~~~ 80 (169)
+|+.|++++ +.+..+|..+..+++|+.|+++. +.+.++| . ..+.|+.|++++|.++.+|........
T Consensus 141 nL~~L~l~~-N~i~~l~~~~~~l~~L~~L~l~~---------N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~ 210 (394)
T COG4886 141 NLKELDLSD-NKIESLPSPLRNLPNLKNLDLSF---------NDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSA 210 (394)
T ss_pred hcccccccc-cchhhhhhhhhccccccccccCC---------chhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhh
Confidence 455555554 23444444445555555555555 3344445 1 666777777777777777766555555
Q ss_pred eE-EEecccccCCccccccccCCccCEEecCCCCCCCCcchhhhcCCCCceEeccCCcceecChhhhcCCCcceEEcc
Q 038441 81 LL-LNLKDWQYLESLPSTINGLKSFKILNLSSCSKLENVPENLGKVESLEELDISRTAIRQLPTSIFLLKNLKAVDHY 157 (169)
Q Consensus 81 L~-l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~~~ 157 (169)
|+ +.+++| .....+..+..+.++..+.+.+ +.+..++..++.+..++++++++|.++.++. ++.+..++.|++.
T Consensus 211 L~~l~~~~N-~~~~~~~~~~~~~~l~~l~l~~-n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s 285 (394)
T COG4886 211 LEELDLSNN-SIIELLSSLSNLKNLSGLELSN-NKLEDLPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLS 285 (394)
T ss_pred hhhhhhcCC-cceecchhhhhcccccccccCC-ceeeeccchhccccccceecccccccccccc-ccccCccCEEecc
Confidence 77 777765 2334445556666777776554 5555556777888889999999999988876 7778888888843
No 25
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.01 E-value=4.8e-11 Score=85.98 Aligned_cols=130 Identities=24% Similarity=0.268 Sum_probs=91.4
Q ss_pred CCCcEEeeCCccccccCchhhcCCCCccEEEecCCCCCCCCCCCCccccccCCCCccEEEeeCCcCcccccccccccceE
Q 038441 3 KFPSTLNLFGLLKFRLFPEIMGRMEHLLVLRLLGTAIRGLPICLKLEKFSKSMKSLTMLILDGTTIRELPLSVELLTGLL 82 (169)
Q Consensus 3 ~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~lp~~~~~~~~L~ 82 (169)
+.|+.+|+++ +.++.+..++.-.+.+++|+++.|.+..+ +.+ ..+++|+.|++++|.++++..+-..+-+++
T Consensus 284 q~LtelDLS~-N~I~~iDESvKL~Pkir~L~lS~N~i~~v------~nL-a~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIK 355 (490)
T KOG1259|consen 284 QELTELDLSG-NLITQIDESVKLAPKLRRLILSQNRIRTV------QNL-AELPQLQLLDLSGNLLAECVGWHLKLGNIK 355 (490)
T ss_pred hhhhhccccc-cchhhhhhhhhhccceeEEeccccceeee------hhh-hhcccceEeecccchhHhhhhhHhhhcCEe
Confidence 4577788888 45777777777788888888888555431 111 667788888888888876655444556677
Q ss_pred -EEecccccCCccccccccCCccCEEecCCCCCCCCcc--hhhhcCCCCceEeccCCcceecCh
Q 038441 83 -LNLKDWQYLESLPSTINGLKSFKILNLSSCSKLENVP--ENLGKVESLEELDISRTAIRQLPT 143 (169)
Q Consensus 83 -l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~ 143 (169)
+.++.| .+..+ .++..+.+|..|++++ |.+..+. +.+++++.|+++.+.+|.+..+++
T Consensus 356 tL~La~N-~iE~L-SGL~KLYSLvnLDl~~-N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 356 TLKLAQN-KIETL-SGLRKLYSLVNLDLSS-NQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred eeehhhh-hHhhh-hhhHhhhhheeccccc-cchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 778876 44433 3566777888888888 5665554 357888888888888888876654
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.97 E-value=5.1e-10 Score=85.39 Aligned_cols=150 Identities=26% Similarity=0.392 Sum_probs=110.7
Q ss_pred CCCcEEeeCCccccccCchhhcCCC-CccEEEecCCCCCCCCCCCCcccc--c-cCCCCccEEEeeCCcCcccccccccc
Q 038441 3 KFPSTLNLFGLLKFRLFPEIMGRME-HLLVLRLLGTAIRGLPICLKLEKF--S-KSMKSLTMLILDGTTIRELPLSVELL 78 (169)
Q Consensus 3 ~~l~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~l~~~--~-~~~~~L~~L~l~~~~~~~lp~~~~~~ 78 (169)
..++.|++.+ +.+..+++....++ +|+.|++++| .++.+ + ..+++|+.|++++|+++.+|...+..
T Consensus 116 ~~l~~L~l~~-n~i~~i~~~~~~~~~nL~~L~l~~N---------~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~ 185 (394)
T COG4886 116 TNLTSLDLDN-NNITDIPPLIGLLKSNLKELDLSDN---------KIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNL 185 (394)
T ss_pred cceeEEecCC-cccccCccccccchhhccccccccc---------chhhhhhhhhccccccccccCCchhhhhhhhhhhh
Confidence 3466777766 45777777665664 8888888884 44444 2 77888899999999988888877677
Q ss_pred cceE-EEecccccCCccccccccCCccCEEecCCCCCCCCcchhhhcCCCCceEeccCCcceecChhhhcCCCcceEEcc
Q 038441 79 TGLL-LNLKDWQYLESLPSTINGLKSFKILNLSSCSKLENVPENLGKVESLEELDISRTAIRQLPTSIFLLKNLKAVDHY 157 (169)
Q Consensus 79 ~~L~-l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~~~ 157 (169)
+.|+ +++++| .+..+|..+.....|+++.+++ +.....+..+.++..+..+.+.+|.+..++..++.+..+++|+
T Consensus 186 ~~L~~L~ls~N-~i~~l~~~~~~~~~L~~l~~~~-N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~-- 261 (394)
T COG4886 186 SNLNNLDLSGN-KISDLPPEIELLSALEELDLSN-NSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLD-- 261 (394)
T ss_pred hhhhheeccCC-ccccCchhhhhhhhhhhhhhcC-CcceecchhhhhcccccccccCCceeeeccchhccccccceec--
Confidence 8888 888887 6666776655666788888887 4455666677888888888888888888777788888899998
Q ss_pred cccccccccC
Q 038441 158 HLHHGICASL 167 (169)
Q Consensus 158 ~l~~~~~~~l 167 (169)
++.+.+.++
T Consensus 262 -~s~n~i~~i 270 (394)
T COG4886 262 -LSNNQISSI 270 (394)
T ss_pred -ccccccccc
Confidence 444444443
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.96 E-value=1.7e-11 Score=94.37 Aligned_cols=109 Identities=28% Similarity=0.449 Sum_probs=94.6
Q ss_pred cCCCCccEEEeeCCcCcccccccccccceE-EEecccccCCccccccccCCccCEEecCCCCCCCCcchhhhcCCCCceE
Q 038441 53 KSMKSLTMLILDGTTIRELPLSVELLTGLL-LNLKDWQYLESLPSTINGLKSFKILNLSSCSKLENVPENLGKVESLEEL 131 (169)
Q Consensus 53 ~~~~~L~~L~l~~~~~~~lp~~~~~~~~L~-l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 131 (169)
..+..|++++++.|++..+|..++.++ |+ +-+++| ....+|..++....|..|+++. +.+..+|..++++.+|+.+
T Consensus 118 ~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNN-kl~~lp~~ig~~~tl~~ld~s~-nei~slpsql~~l~slr~l 194 (722)
T KOG0532|consen 118 CNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNN-KLTSLPEEIGLLPTLAHLDVSK-NEIQSLPSQLGYLTSLRDL 194 (722)
T ss_pred hhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecC-ccccCCcccccchhHHHhhhhh-hhhhhchHHhhhHHHHHHH
Confidence 667889999999999999999988887 67 767765 7888999999888999999997 6788999999999999999
Q ss_pred eccCCcceecChhhhcCCCcceEEcccccccccccCC
Q 038441 132 DISRTAIRQLPTSIFLLKNLKAVDHYHLHHGICASLP 168 (169)
Q Consensus 132 ~l~~n~l~~~~~~~~~l~~L~~L~~~~l~~~~~~~l~ 168 (169)
.+..|++..+|..+..| .|..|| ++-|.+..||
T Consensus 195 ~vrRn~l~~lp~El~~L-pLi~lD---fScNkis~iP 227 (722)
T KOG0532|consen 195 NVRRNHLEDLPEELCSL-PLIRLD---FSCNKISYLP 227 (722)
T ss_pred HHhhhhhhhCCHHHhCC-ceeeee---cccCceeecc
Confidence 99999999999988865 688899 6666667666
No 28
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.92 E-value=1.7e-10 Score=85.56 Aligned_cols=120 Identities=22% Similarity=0.280 Sum_probs=93.6
Q ss_pred CCccccccCC-CCccEEEeeCCcCcccccc-cccccceE-EEecccccCCccccccccCCccCEEecCCCCCCCCcch-h
Q 038441 46 LKLEKFSKSM-KSLTMLILDGTTIRELPLS-VELLTGLL-LNLKDWQYLESLPSTINGLKSFKILNLSSCSKLENVPE-N 121 (169)
Q Consensus 46 ~~l~~~~~~~-~~L~~L~l~~~~~~~lp~~-~~~~~~L~-l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~ 121 (169)
..++++|..+ +....++++.|+|+.+|+. |+.+.+|+ +++++|++....|+.|.++.++..|.+.++|.|+.+|. .
T Consensus 56 ~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~ 135 (498)
T KOG4237|consen 56 KGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGA 135 (498)
T ss_pred CCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhH
Confidence 4567777444 4567889999999999886 88899999 99999866666678888999888887777788999886 5
Q ss_pred hhcCCCCceEeccCCcceecCh-hhhcCCCcceEEcccccccccccCC
Q 038441 122 LGKVESLEELDISRTAIRQLPT-SIFLLKNLKAVDHYHLHHGICASLP 168 (169)
Q Consensus 122 ~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~~~~l~~~~~~~l~ 168 (169)
|+++..++-|.+.-|++.-++. .+.+++++..|. +.|+.++.++
T Consensus 136 F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLs---lyDn~~q~i~ 180 (498)
T KOG4237|consen 136 FGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLS---LYDNKIQSIC 180 (498)
T ss_pred hhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhc---ccchhhhhhc
Confidence 7888888888888888885554 677888777777 5566555543
No 29
>PLN03150 hypothetical protein; Provisional
Probab=98.89 E-value=5.7e-09 Score=83.96 Aligned_cols=98 Identities=23% Similarity=0.377 Sum_probs=81.9
Q ss_pred ccEEEeeCCcCc-ccccccccccceE-EEecccccCCccccccccCCccCEEecCCCCCCCCcchhhhcCCCCceEeccC
Q 038441 58 LTMLILDGTTIR-ELPLSVELLTGLL-LNLKDWQYLESLPSTINGLKSFKILNLSSCSKLENVPENLGKVESLEELDISR 135 (169)
Q Consensus 58 L~~L~l~~~~~~-~lp~~~~~~~~L~-l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 135 (169)
++.|++++|.++ .+|+.++.+++|+ +++++|...+.+|..+..+++|+.|++++|...+.+|..++++++|++|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 678889999888 6788899999999 99999877778888889999999999998766678899999999999999999
Q ss_pred Ccce-ecChhhhcC-CCcceEE
Q 038441 136 TAIR-QLPTSIFLL-KNLKAVD 155 (169)
Q Consensus 136 n~l~-~~~~~~~~l-~~L~~L~ 155 (169)
|.++ .+|..+..+ .++..++
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~ 521 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFN 521 (623)
T ss_pred CcccccCChHHhhccccCceEE
Confidence 9998 788776543 3445555
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.88 E-value=9.3e-10 Score=79.47 Aligned_cols=100 Identities=28% Similarity=0.328 Sum_probs=64.8
Q ss_pred cCCCCccEEEeeCCcCcccccccccccceE-EEecccccCCccccccccCCccCEEecCCCCCCCCcchhh---------
Q 038441 53 KSMKSLTMLILDGTTIRELPLSVELLTGLL-LNLKDWQYLESLPSTINGLKSFKILNLSSCSKLENVPENL--------- 122 (169)
Q Consensus 53 ~~~~~L~~L~l~~~~~~~lp~~~~~~~~L~-l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~--------- 122 (169)
..|+.|+.+++++|.|+.+.+++.-.|.++ +++++|. +..+. .+..+++|+.|++++ |.+..+..+-
T Consensus 281 dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~-i~~v~-nLa~L~~L~~LDLS~-N~Ls~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNR-IRTVQ-NLAELPQLQLLDLSG-NLLAECVGWHLKLGNIKTL 357 (490)
T ss_pred chHhhhhhccccccchhhhhhhhhhccceeEEeccccc-eeeeh-hhhhcccceEeeccc-chhHhhhhhHhhhcCEeee
Confidence 567778888888888888877777788888 8888873 33332 366788888888887 4544443332
Q ss_pred -------------hcCCCCceEeccCCcceecCh--hhhcCCCcceEE
Q 038441 123 -------------GKVESLEELDISRTAIRQLPT--SIFLLKNLKAVD 155 (169)
Q Consensus 123 -------------~~l~~L~~L~l~~n~l~~~~~--~~~~l~~L~~L~ 155 (169)
..+-+|..||+++|++..+.. +++.++.|+++.
T Consensus 358 ~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~ 405 (490)
T KOG1259|consen 358 KLAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLR 405 (490)
T ss_pred ehhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHh
Confidence 334455566666666554322 455555555555
No 31
>PLN03150 hypothetical protein; Provisional
Probab=98.82 E-value=1.5e-08 Score=81.65 Aligned_cols=101 Identities=29% Similarity=0.419 Sum_probs=59.6
Q ss_pred ccEEEecCCCCCCCCCCCCccccc---cCCCCccEEEeeCCcCc-ccccccccccceE-EEecccccCCccccccccCCc
Q 038441 29 LLVLRLLGTAIRGLPICLKLEKFS---KSMKSLTMLILDGTTIR-ELPLSVELLTGLL-LNLKDWQYLESLPSTINGLKS 103 (169)
Q Consensus 29 L~~L~l~~n~l~~~~~~~~l~~~~---~~~~~L~~L~l~~~~~~-~lp~~~~~~~~L~-l~l~~~~~~~~~~~~~~~~~~ 103 (169)
++.|++++|.+.+ .+| ..+++|+.|++++|.++ .+|..++.+++|+ |++++|+..+.+|..+..+++
T Consensus 420 v~~L~L~~n~L~g--------~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~ 491 (623)
T PLN03150 420 IDGLGLDNQGLRG--------FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491 (623)
T ss_pred EEEEECCCCCccc--------cCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCC
Confidence 4556666655543 122 45566666666666665 5566666666666 666666555566666666666
Q ss_pred cCEEecCCCCCCCCcchhhhcC-CCCceEeccCCc
Q 038441 104 FKILNLSSCSKLENVPENLGKV-ESLEELDISRTA 137 (169)
Q Consensus 104 L~~L~l~~~~~~~~~~~~~~~l-~~L~~L~l~~n~ 137 (169)
|++|++++|.....+|..+... .++..+++.+|.
T Consensus 492 L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 492 LRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence 6666666655555666655442 244555555554
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=1.2e-09 Score=81.93 Aligned_cols=132 Identities=18% Similarity=0.234 Sum_probs=58.8
Q ss_pred CCCCcEEeeCCccc--cccCchhhcCCCCccEEEecCCCCCCCCCCCCccccc-cCCCCccEEEeeCCcCc--ccccccc
Q 038441 2 LKFPSTLNLFGLLK--FRLFPEIMGRMEHLLVLRLLGTAIRGLPICLKLEKFS-KSMKSLTMLILDGTTIR--ELPLSVE 76 (169)
Q Consensus 2 l~~l~~L~l~~~~~--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~-~~~~~L~~L~l~~~~~~--~lp~~~~ 76 (169)
+..++.||++.+-. +..+-.....+++|+.|+++.|.+... ....- ..+++++.|.++.|+++ ++-..+.
T Consensus 145 ~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~-----~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~ 219 (505)
T KOG3207|consen 145 LPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNF-----ISSNTTLLLSHLKQLVLNSCGLSWKDVQWILL 219 (505)
T ss_pred CCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCC-----ccccchhhhhhhheEEeccCCCCHHHHHHHHH
Confidence 45566666666322 222223345577777777777655431 00000 23445555555555544 2333344
Q ss_pred cccceE-EEecccccCCccccccccCCccCEEecCCCCCCCCcc--hhhhcCCCCceEeccCCcce
Q 038441 77 LLTGLL-LNLKDWQYLESLPSTINGLKSFKILNLSSCSKLENVP--ENLGKVESLEELDISRTAIR 139 (169)
Q Consensus 77 ~~~~L~-l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~n~l~ 139 (169)
.+|++. +.+..|+.+.........++.|+.|++++|+.+ .++ ..++.++.|+.|+++.+.+.
T Consensus 220 ~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~ 284 (505)
T KOG3207|consen 220 TFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIA 284 (505)
T ss_pred hCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhccccCcc
Confidence 455555 555554321111111223445555555553322 222 12344444444444444444
No 33
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.80 E-value=6.1e-10 Score=82.69 Aligned_cols=80 Identities=23% Similarity=0.282 Sum_probs=38.7
Q ss_pred cccccceE-EEecccccCCccccccccCCccCEEecCCCCCCCCcc-hhhhcCCCCceEeccCCccee-cChhhhcCCCc
Q 038441 75 VELLTGLL-LNLKDWQYLESLPSTINGLKSFKILNLSSCSKLENVP-ENLGKVESLEELDISRTAIRQ-LPTSIFLLKNL 151 (169)
Q Consensus 75 ~~~~~~L~-l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~-~~~~~~~l~~L 151 (169)
|..+++|+ +++++|.....-+..|.+...+++|++.+ |.+..+. ..|.++..|++|++.+|.|+. -|..|..+..|
T Consensus 270 f~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~-N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l 348 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTR-NKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSL 348 (498)
T ss_pred HhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCc-chHHHHHHHhhhccccceeeeecCCeeEEEeccccccccee
Confidence 44455555 55555433322233444455555555554 3333332 234555556666666666653 23345555555
Q ss_pred ceEE
Q 038441 152 KAVD 155 (169)
Q Consensus 152 ~~L~ 155 (169)
.+|.
T Consensus 349 ~~l~ 352 (498)
T KOG4237|consen 349 STLN 352 (498)
T ss_pred eeee
Confidence 5554
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=6.5e-10 Score=83.35 Aligned_cols=159 Identities=18% Similarity=0.142 Sum_probs=109.1
Q ss_pred CCCCcEEeeCCccccccCch--hhcCCCCccEEEecCCCCCCCCCCCCccccccCCCCccEEEeeCCcCcccccc--ccc
Q 038441 2 LKFPSTLNLFGLLKFRLFPE--IMGRMEHLLVLRLLGTAIRGLPICLKLEKFSKSMKSLTMLILDGTTIRELPLS--VEL 77 (169)
Q Consensus 2 l~~l~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~lp~~--~~~ 77 (169)
++.|+...+.+| .+...+. -...|++++.|++++|-+.. |..+..+...+++|+.|+++.|.+.....+ -..
T Consensus 120 ~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL~~n---w~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~ 195 (505)
T KOG3207|consen 120 LKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNLFHN---WFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL 195 (505)
T ss_pred HHhhhheeecCc-cccccchhhhhhhCCcceeecchhhhHHh---HHHHHHHHHhcccchhcccccccccCCccccchhh
Confidence 356777777664 3554442 45679999999999988876 444445558899999999999977633222 345
Q ss_pred ccceE-EEecccccCCcc-ccccccCCccCEEecCCCCCCCCcchhhhcCCCCceEeccCCcceecCh--hhhcCCCcce
Q 038441 78 LTGLL-LNLKDWQYLESL-PSTINGLKSFKILNLSSCSKLENVPENLGKVESLEELDISRTAIRQLPT--SIFLLKNLKA 153 (169)
Q Consensus 78 ~~~L~-l~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~l~~L~~ 153 (169)
+++++ +.++.|...... -..+..+++|..|++.+|+.+........-+..|+.|++++|.+.+.+. ..+.++.|..
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQ 275 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhh
Confidence 67888 999998554322 2344578999999999865443333334556789999999999887763 4567777777
Q ss_pred EEcccccccccccC
Q 038441 154 VDHYHLHHGICASL 167 (169)
Q Consensus 154 L~~~~l~~~~~~~l 167 (169)
|. +++..++++
T Consensus 276 Ln---ls~tgi~si 286 (505)
T KOG3207|consen 276 LN---LSSTGIASI 286 (505)
T ss_pred hh---ccccCcchh
Confidence 76 444444443
No 35
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.71 E-value=1.8e-08 Score=56.45 Aligned_cols=55 Identities=25% Similarity=0.388 Sum_probs=29.5
Q ss_pred CccEEEeeCCcCcccccc-cccccceE-EEecccccCCccccccccCCccCEEecCC
Q 038441 57 SLTMLILDGTTIRELPLS-VELLTGLL-LNLKDWQYLESLPSTINGLKSFKILNLSS 111 (169)
Q Consensus 57 ~L~~L~l~~~~~~~lp~~-~~~~~~L~-l~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 111 (169)
+|++|++++|.++.+|+. +..+++|+ +++++|.....-+..+.++++|+++++++
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~ 58 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSN 58 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcC
Confidence 456666666666665543 45556666 66665533222233445555566555555
No 36
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.55 E-value=7.7e-08 Score=53.87 Aligned_cols=52 Identities=31% Similarity=0.581 Sum_probs=25.9
Q ss_pred ccCEEecCCCCCCCCcch-hhhcCCCCceEeccCCcceecCh-hhhcCCCcceEE
Q 038441 103 SFKILNLSSCSKLENVPE-NLGKVESLEELDISRTAIRQLPT-SIFLLKNLKAVD 155 (169)
Q Consensus 103 ~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~ 155 (169)
+|++|++++ +.+..+|. .|.++++|+++++++|+++.++. .+.++++|++|+
T Consensus 2 ~L~~L~l~~-n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~ 55 (61)
T PF13855_consen 2 NLESLDLSN-NKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLD 55 (61)
T ss_dssp TESEEEETS-STESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEE
T ss_pred cCcEEECCC-CCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEe
Confidence 345555554 24444442 34455555555555555554443 445555555555
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.44 E-value=2e-07 Score=77.45 Aligned_cols=98 Identities=27% Similarity=0.423 Sum_probs=44.6
Q ss_pred CccEEEeeCCc--Ccccccc-cccccceE-EEecccccCCccccccccCCccCEEecCCCCCCCCcchhhhcCCCCceEe
Q 038441 57 SLTMLILDGTT--IRELPLS-VELLTGLL-LNLKDWQYLESLPSTINGLKSFKILNLSSCSKLENVPENLGKVESLEELD 132 (169)
Q Consensus 57 ~L~~L~l~~~~--~~~lp~~-~~~~~~L~-l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 132 (169)
.|+.|-+.+|. +..++.. |..++.|+ +++++|.....+|..++.+-+|++|++++ ..+..+|..+.+++.|.+|+
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~~Ln 624 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISHLPSGLGNLKKLIYLN 624 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC-CCccccchHHHHHHhhheec
Confidence 34444444443 2333333 33345555 55554444444555555555555555544 34445555555555555555
Q ss_pred ccCCcce-ecChhhhcCCCcceEE
Q 038441 133 ISRTAIR-QLPTSIFLLKNLKAVD 155 (169)
Q Consensus 133 l~~n~l~-~~~~~~~~l~~L~~L~ 155 (169)
+..+... .+|.....+++|++|.
T Consensus 625 l~~~~~l~~~~~i~~~L~~Lr~L~ 648 (889)
T KOG4658|consen 625 LEVTGRLESIPGILLELQSLRVLR 648 (889)
T ss_pred cccccccccccchhhhcccccEEE
Confidence 5444322 2233333344444444
No 38
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.43 E-value=3.6e-07 Score=75.93 Aligned_cols=84 Identities=36% Similarity=0.516 Sum_probs=72.2
Q ss_pred cCCCCccEEEeeCC-cCcccccccccccceE-EEecccccCCccccccccCCccCEEecCCCCCCCCcchhhhcCCCCce
Q 038441 53 KSMKSLTMLILDGT-TIRELPLSVELLTGLL-LNLKDWQYLESLPSTINGLKSFKILNLSSCSKLENVPENLGKVESLEE 130 (169)
Q Consensus 53 ~~~~~L~~L~l~~~-~~~~lp~~~~~~~~L~-l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 130 (169)
..++.|+.|++++| .+.++|..++.+-+|+ +++++. .+..+|.++.++..|.+|++..+.....+|.....+.+|++
T Consensus 568 ~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~ 646 (889)
T KOG4658|consen 568 RSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRV 646 (889)
T ss_pred hhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC-CccccchHHHHHHhhheeccccccccccccchhhhcccccE
Confidence 56888999999988 6789999999999999 999986 77789999999999999999876666666777777999999
Q ss_pred EeccCCc
Q 038441 131 LDISRTA 137 (169)
Q Consensus 131 L~l~~n~ 137 (169)
|.+....
T Consensus 647 L~l~~s~ 653 (889)
T KOG4658|consen 647 LRLPRSA 653 (889)
T ss_pred EEeeccc
Confidence 9987765
No 39
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.34 E-value=8.9e-07 Score=46.06 Aligned_cols=40 Identities=28% Similarity=0.585 Sum_probs=30.2
Q ss_pred CccCEEecCCCCCCCCcchhhhcCCCCceEeccCCcceecC
Q 038441 102 KSFKILNLSSCSKLENVPENLGKVESLEELDISRTAIRQLP 142 (169)
Q Consensus 102 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 142 (169)
++|++|++++ +.+..+|..++++++|+.|++++|++++++
T Consensus 1 ~~L~~L~l~~-N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSN-NQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETS-SS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccC-CCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 3678888887 577788877888888888888888888764
No 40
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.34 E-value=6.1e-08 Score=62.51 Aligned_cols=89 Identities=19% Similarity=0.317 Sum_probs=60.8
Q ss_pred CCCCccEEEeeCCcCccccccccc-ccceE-EEecccccCCccccccccCCccCEEecCCCCCCCCcchhhhcCCCCceE
Q 038441 54 SMKSLTMLILDGTTIRELPLSVEL-LTGLL-LNLKDWQYLESLPSTINGLKSFKILNLSSCSKLENVPENLGKVESLEEL 131 (169)
Q Consensus 54 ~~~~L~~L~l~~~~~~~lp~~~~~-~~~L~-l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 131 (169)
....|+..++++|.+.++|+.+.. .+..+ +++.+| -+..+|.++..++.|+.++++. |.+...|+.+..+.++.+|
T Consensus 51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lNl~~-N~l~~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLNLRF-NPLNAEPRVIAPLIKLDML 128 (177)
T ss_pred CCceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhccccc-CccccchHHHHHHHhHHHh
Confidence 334466677777777777776443 34566 777775 5556677777777777777776 5666777777777777777
Q ss_pred eccCCcceecChh
Q 038441 132 DISRTAIRQLPTS 144 (169)
Q Consensus 132 ~l~~n~l~~~~~~ 144 (169)
+..+|....+|-.
T Consensus 129 ds~~na~~eid~d 141 (177)
T KOG4579|consen 129 DSPENARAEIDVD 141 (177)
T ss_pred cCCCCccccCcHH
Confidence 7777777666553
No 41
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.33 E-value=2.7e-06 Score=64.75 Aligned_cols=61 Identities=18% Similarity=0.204 Sum_probs=41.0
Q ss_pred CCCCcEEeeCCccccccCchhhcCCCCccEEEecCCCCCCCCCCCCcccccc-CCCCccEEEeeCC-cCcccccc
Q 038441 2 LKFPSTLNLFGLLKFRLFPEIMGRMEHLLVLRLLGTAIRGLPICLKLEKFSK-SMKSLTMLILDGT-TIRELPLS 74 (169)
Q Consensus 2 l~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~~-~~~~L~~L~l~~~-~~~~lp~~ 74 (169)
++.++.|++++| .++.+|. --.+|++|.+++ |..++.+|. -.++|+.|.+++| .+..+|+.
T Consensus 51 ~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsn--------c~nLtsLP~~LP~nLe~L~Ls~Cs~L~sLP~s 113 (426)
T PRK15386 51 ARASGRLYIKDC-DIESLPV---LPNELTEITIEN--------CNNLTTLPGSIPEGLEKLTVCHCPEISGLPES 113 (426)
T ss_pred hcCCCEEEeCCC-CCcccCC---CCCCCcEEEccC--------CCCcccCCchhhhhhhheEccCcccccccccc
Confidence 456788888887 5777772 123588888877 666666662 2356788888877 66666654
No 42
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.25 E-value=8.9e-07 Score=71.92 Aligned_cols=131 Identities=21% Similarity=0.252 Sum_probs=85.6
Q ss_pred CCCcEEeeCCccccccC-chhhc-CCCCccEEEecCCCCCCCCCCCCccccccCCCCccEEEeeCCcCcccccccccccc
Q 038441 3 KFPSTLNLFGLLKFRLF-PEIMG-RMEHLLVLRLLGTAIRGLPICLKLEKFSKSMKSLTMLILDGTTIRELPLSVELLTG 80 (169)
Q Consensus 3 ~~l~~L~l~~~~~~~~~-~~~~~-~l~~L~~L~l~~n~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~lp~~~~~~~~ 80 (169)
++|+.|+++|-..+..- |..++ .||.|+.|.+++-.+.. ..+..+-..+++|..|++++++++.+ .+++.+++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~----~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~Lkn 196 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDN----DDFSQLCASFPNLRSLDISGTNISNL-SGISRLKN 196 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecc----hhHHHHhhccCccceeecCCCCccCc-HHHhcccc
Confidence 46788888884433222 33333 37999999998844433 22222227889999999999998877 56778888
Q ss_pred eE-EEecccccCC-ccccccccCCccCEEecCCCCCCCCcchh-------hhcCCCCceEeccCCcce
Q 038441 81 LL-LNLKDWQYLE-SLPSTINGLKSFKILNLSSCSKLENVPEN-------LGKVESLEELDISRTAIR 139 (169)
Q Consensus 81 L~-l~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-------~~~l~~L~~L~l~~n~l~ 139 (169)
|+ |.+.+-.... ..-..++++++|++||++..... ..+.. -..++.|+.||.|++.+.
T Consensus 197 Lq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~-~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 197 LQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN-DDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred HHHHhccCCCCCchhhHHHHhcccCCCeeeccccccc-cchHHHHHHHHhcccCccccEEecCCcchh
Confidence 88 8776542222 11236788999999999863222 22211 124788999999988665
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.23 E-value=3.1e-07 Score=70.71 Aligned_cols=143 Identities=27% Similarity=0.363 Sum_probs=85.9
Q ss_pred CCCCcEEeeCCccccccCchhhcCCCCccEEEecCCCCCCCCCCCCccccccCCCCccEEEeeCCcCcccccccccccce
Q 038441 2 LKFPSTLNLFGLLKFRLFPEIMGRMEHLLVLRLLGTAIRGLPICLKLEKFSKSMKSLTMLILDGTTIRELPLSVELLTGL 81 (169)
Q Consensus 2 l~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~lp~~~~~~~~L 81 (169)
+++++.|++.++ .+..+...+..+++|++|++++|.++.+. .+ ..++.|+.|++.+|.++.+.. +..+..+
T Consensus 94 ~~~l~~l~l~~n-~i~~i~~~l~~~~~L~~L~ls~N~I~~i~---~l----~~l~~L~~L~l~~N~i~~~~~-~~~l~~L 164 (414)
T KOG0531|consen 94 LKSLEALDLYDN-KIEKIENLLSSLVNLQVLDLSFNKITKLE---GL----STLTLLKELNLSGNLISDISG-LESLKSL 164 (414)
T ss_pred ccceeeeecccc-chhhcccchhhhhcchheecccccccccc---ch----hhccchhhheeccCcchhccC-Cccchhh
Confidence 567888888774 46656554667889999999997776631 11 334457788888887776532 3346677
Q ss_pred E-EEecccccCCccccc-cccCCccCEEecCCCCCCCCcch---------------h---hhcCC-----CCceEeccCC
Q 038441 82 L-LNLKDWQYLESLPST-INGLKSFKILNLSSCSKLENVPE---------------N---LGKVE-----SLEELDISRT 136 (169)
Q Consensus 82 ~-l~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~---------------~---~~~l~-----~L~~L~l~~n 136 (169)
+ +++++|+... +... ...+..++.+.+.++ .+..+.. . +.++. +|+.+++++|
T Consensus 165 ~~l~l~~n~i~~-ie~~~~~~~~~l~~l~l~~n-~i~~i~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n 242 (414)
T KOG0531|consen 165 KLLDLSYNRIVD-IENDELSELISLEELDLGGN-SIREIEGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGN 242 (414)
T ss_pred hcccCCcchhhh-hhhhhhhhccchHHHhccCC-chhcccchHHHHHHHHhhcccccceeccCcccchhHHHHHHhcccC
Confidence 7 7777764333 2221 356666777777663 3221110 0 11111 1677777777
Q ss_pred cceecChhhhcCCCcceEE
Q 038441 137 AIRQLPTSIFLLKNLKAVD 155 (169)
Q Consensus 137 ~l~~~~~~~~~l~~L~~L~ 155 (169)
.+...+.++..+..+..++
T Consensus 243 ~i~~~~~~~~~~~~l~~l~ 261 (414)
T KOG0531|consen 243 RISRSPEGLENLKNLPVLD 261 (414)
T ss_pred ccccccccccccccccccc
Confidence 7776655555666666666
No 44
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.20 E-value=3.7e-07 Score=67.07 Aligned_cols=129 Identities=16% Similarity=0.155 Sum_probs=71.0
Q ss_pred hhcCCCCccEEEecCCCCCCCCCCCCccccc---cCCCCccEEEeeCCcCcccc--------------cccccccceE-E
Q 038441 22 IMGRMEHLLVLRLLGTAIRGLPICLKLEKFS---KSMKSLTMLILDGTTIRELP--------------LSVELLTGLL-L 83 (169)
Q Consensus 22 ~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~---~~~~~L~~L~l~~~~~~~lp--------------~~~~~~~~L~-l 83 (169)
.+..+++|+.++||+|++.. ..++.+. .+...|++|++.+|.+...- .-.+.-+.|+ +
T Consensus 87 aL~~~~~L~~ldLSDNA~G~----~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~ 162 (382)
T KOG1909|consen 87 ALLGCPKLQKLDLSDNAFGP----KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVF 162 (382)
T ss_pred HHhcCCceeEeeccccccCc----cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEE
Confidence 44566788888888888776 3443333 55666777777777654211 1123345666 6
Q ss_pred EecccccCCc----cccccccCCccCEEecCCCCCCC-----CcchhhhcCCCCceEeccCCcce-----ecChhhhcCC
Q 038441 84 NLKDWQYLES----LPSTINGLKSFKILNLSSCSKLE-----NVPENLGKVESLEELDISRTAIR-----QLPTSIFLLK 149 (169)
Q Consensus 84 ~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~l~~L~~L~l~~n~l~-----~~~~~~~~l~ 149 (169)
...+|+.-.. +...++..+.|+.+.+..| .+. -+-..+.++++|+.||+..|.|+ .+...+..++
T Consensus 163 i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN-~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~ 241 (382)
T KOG1909|consen 163 ICGRNRLENGGATALAEAFQSHPTLEEVRLSQN-GIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWP 241 (382)
T ss_pred EeeccccccccHHHHHHHHHhccccceEEEecc-cccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccc
Confidence 6666533221 1224445566666666552 221 12234567777777777777665 2333445566
Q ss_pred CcceEE
Q 038441 150 NLKAVD 155 (169)
Q Consensus 150 ~L~~L~ 155 (169)
+|+.++
T Consensus 242 ~L~El~ 247 (382)
T KOG1909|consen 242 HLRELN 247 (382)
T ss_pred hheeec
Confidence 666665
No 45
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.20 E-value=7.1e-06 Score=62.49 Aligned_cols=114 Identities=20% Similarity=0.339 Sum_probs=72.9
Q ss_pred hcCCCCccEEEecCCCCCCCCCCCCccccccCCCCccEEEeeCC-cCcccccccccccceE-EEecccccCCcccccccc
Q 038441 23 MGRMEHLLVLRLLGTAIRGLPICLKLEKFSKSMKSLTMLILDGT-TIRELPLSVELLTGLL-LNLKDWQYLESLPSTING 100 (169)
Q Consensus 23 ~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~lp~~~~~~~~L~-l~l~~~~~~~~~~~~~~~ 100 (169)
+..+++++.|++++| .++.+|.-..+|+.|.++++ .++.+|..+. ++|+ |.+++|..+..+|..
T Consensus 48 ~~~~~~l~~L~Is~c---------~L~sLP~LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~s--- 113 (426)
T PRK15386 48 IEEARASGRLYIKDC---------DIESLPVLPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPES--- 113 (426)
T ss_pred HHHhcCCCEEEeCCC---------CCcccCCCCCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccccc---
Confidence 345789999999993 45556643456999999886 6777776543 4788 899887555555543
Q ss_pred CCccCEEecCC--CCCCCCcchhhhcC------------------CCCceEeccCCcceecChhhhcCCCcceEE
Q 038441 101 LKSFKILNLSS--CSKLENVPENLGKV------------------ESLEELDISRTAIRQLPTSIFLLKNLKAVD 155 (169)
Q Consensus 101 ~~~L~~L~l~~--~~~~~~~~~~~~~l------------------~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~ 155 (169)
|+.|++.. +..+..+|..+..+ .+|++|++++|....+|..+. .+|+.|+
T Consensus 114 ---Le~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~ 183 (426)
T PRK15386 114 ---VRSLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPEKLP--ESLQSIT 183 (426)
T ss_pred ---cceEEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcccCccccc--ccCcEEE
Confidence 44444443 22345555543322 368888888887665554433 3566666
No 46
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.17 E-value=1.6e-07 Score=60.55 Aligned_cols=105 Identities=19% Similarity=0.238 Sum_probs=79.2
Q ss_pred CcEEeeCCccccccCchh---hcCCCCccEEEecCCCCCCCCCCCCccccc----cCCCCccEEEeeCCcCccccccccc
Q 038441 5 PSTLNLFGLLKFRLFPEI---MGRMEHLLVLRLLGTAIRGLPICLKLEKFS----KSMKSLTMLILDGTTIRELPLSVEL 77 (169)
Q Consensus 5 l~~L~l~~~~~~~~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~----~~~~~L~~L~l~~~~~~~lp~~~~~ 77 (169)
+..++++.|. +..+++. +.....|...++++ +.++++| ...+..+.+++++|.+..+|+++..
T Consensus 29 ~h~ldLssc~-lm~i~davy~l~~~~el~~i~ls~---------N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aa 98 (177)
T KOG4579|consen 29 LHFLDLSSCQ-LMYIADAVYMLSKGYELTKISLSD---------NGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAA 98 (177)
T ss_pred hhhcccccch-hhHHHHHHHHHhCCceEEEEeccc---------chhhhCCHHHhhccchhhhhhcchhhhhhchHHHhh
Confidence 3457787775 3344444 44455667779999 5566666 5556789999999999999999999
Q ss_pred ccceE-EEecccccCCccccccccCCccCEEecCCCCCCCCcchh
Q 038441 78 LTGLL-LNLKDWQYLESLPSTINGLKSFKILNLSSCSKLENVPEN 121 (169)
Q Consensus 78 ~~~L~-l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 121 (169)
++.|+ ++++.| .....|..+..+.++.+|+..+ +....+|-.
T Consensus 99 m~aLr~lNl~~N-~l~~~p~vi~~L~~l~~Lds~~-na~~eid~d 141 (177)
T KOG4579|consen 99 MPALRSLNLRFN-PLNAEPRVIAPLIKLDMLDSPE-NARAEIDVD 141 (177)
T ss_pred hHHhhhcccccC-ccccchHHHHHHHhHHHhcCCC-CccccCcHH
Confidence 99999 999997 5566677677788999999887 666666654
No 47
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.13 E-value=1.6e-06 Score=70.54 Aligned_cols=128 Identities=21% Similarity=0.272 Sum_probs=87.7
Q ss_pred CCCccEEEecCCCCCCCCCCCCccccccCCCCccEEEeeCCcCc--ccccccccccceE-EEecccccCCccccccccCC
Q 038441 26 MEHLLVLRLLGTAIRGLPICLKLEKFSKSMKSLTMLILDGTTIR--ELPLSVELLTGLL-LNLKDWQYLESLPSTINGLK 102 (169)
Q Consensus 26 l~~L~~L~l~~n~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~--~lp~~~~~~~~L~-l~l~~~~~~~~~~~~~~~~~ 102 (169)
-.+|+.|+++|...-. +....++...+|+|+.|.+.+-.+. ++..-..++++|. ||+++. .+..+ .+++.++
T Consensus 121 r~nL~~LdI~G~~~~s---~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~GIS~Lk 195 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFS---NGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL-SGISRLK 195 (699)
T ss_pred HHhhhhcCccccchhh---ccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc-HHHhccc
Confidence 3578888888843322 2333444477899999999887654 3444456788999 999986 45444 5778899
Q ss_pred ccCEEecCCCCCCCCcc--hhhhcCCCCceEeccCCcceecChh-------hhcCCCcceEEcccc
Q 038441 103 SFKILNLSSCSKLENVP--ENLGKVESLEELDISRTAIRQLPTS-------IFLLKNLKAVDHYHL 159 (169)
Q Consensus 103 ~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~-------~~~l~~L~~L~~~~l 159 (169)
+|+.|.+.+ -.+.... ..+.++++|++||+|......-+.. -..++.|+.|||++-
T Consensus 196 nLq~L~mrn-Le~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT 260 (699)
T KOG3665|consen 196 NLQVLSMRN-LEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT 260 (699)
T ss_pred cHHHHhccC-CCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc
Confidence 999988775 3333222 3577899999999999765433311 145889999998753
No 48
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.08 E-value=3.1e-06 Score=44.02 Aligned_cols=40 Identities=33% Similarity=0.540 Sum_probs=32.3
Q ss_pred CCCceEeccCCcceecChhhhcCCCcceEEcccccccccccCC
Q 038441 126 ESLEELDISRTAIRQLPTSIFLLKNLKAVDHYHLHHGICASLP 168 (169)
Q Consensus 126 ~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~~~~l~~~~~~~l~ 168 (169)
++|++|++++|.++++|..+..+++|+.|+ ++.+.+.+++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~---l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLN---LSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEE---ETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEE---ecCCCCCCCc
Confidence 468999999999999998899999999999 6666666554
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.05 E-value=2.5e-07 Score=74.03 Aligned_cols=131 Identities=27% Similarity=0.351 Sum_probs=76.0
Q ss_pred chhhcCCCCccEEEecCCCCCC---CC---------CCCC-cc-----------ccc--cCCCCccEEEeeCCcCccccc
Q 038441 20 PEIMGRMEHLLVLRLLGTAIRG---LP---------ICLK-LE-----------KFS--KSMKSLTMLILDGTTIRELPL 73 (169)
Q Consensus 20 ~~~~~~l~~L~~L~l~~n~l~~---~~---------~~~~-l~-----------~~~--~~~~~L~~L~l~~~~~~~lp~ 73 (169)
|-.+..++.|++|.+.++.+.. +. +|-+ ++ ++. ..|..|...+.++|.+..+..
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~ 181 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMDE 181 (1096)
T ss_pred CceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHHH
Confidence 3346778889999998877643 10 1111 11 111 233445555666666666666
Q ss_pred ccccccceE-EEecccccCCccccccccCCccCEEecCCCCCCCCcchh-hhcCCCCceEeccCCcceecChhhhcCCCc
Q 038441 74 SVELLTGLL-LNLKDWQYLESLPSTINGLKSFKILNLSSCSKLENVPEN-LGKVESLEELDISRTAIRQLPTSIFLLKNL 151 (169)
Q Consensus 74 ~~~~~~~L~-l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L 151 (169)
++.-++.++ +++++|+..+.. .+..++.|++|+++. |.+..+|.. ...+. |+.|.+++|.++.+. ++.++.+|
T Consensus 182 SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsy-N~L~~vp~l~~~gc~-L~~L~lrnN~l~tL~-gie~LksL 256 (1096)
T KOG1859|consen 182 SLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSY-NCLRHVPQLSMVGCK-LQLLNLRNNALTTLR-GIENLKSL 256 (1096)
T ss_pred HHHHHHHhhhhccchhhhhhhH--HHHhccccccccccc-chhccccccchhhhh-heeeeecccHHHhhh-hHHhhhhh
Confidence 666666777 777776444432 556677777777776 555555542 22222 666777777666553 45556666
Q ss_pred ceEE
Q 038441 152 KAVD 155 (169)
Q Consensus 152 ~~L~ 155 (169)
+.||
T Consensus 257 ~~LD 260 (1096)
T KOG1859|consen 257 YGLD 260 (1096)
T ss_pred hccc
Confidence 6666
No 50
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.02 E-value=1.3e-05 Score=55.00 Aligned_cols=102 Identities=21% Similarity=0.345 Sum_probs=69.5
Q ss_pred CCCccEEEecCCCCCCCCCCCCccccccCCCCccEEEeeCCcCccccccccc-ccceE-EEecccccCCcccc--ccccC
Q 038441 26 MEHLLVLRLLGTAIRGLPICLKLEKFSKSMKSLTMLILDGTTIRELPLSVEL-LTGLL-LNLKDWQYLESLPS--TINGL 101 (169)
Q Consensus 26 l~~L~~L~l~~n~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~lp~~~~~-~~~L~-l~l~~~~~~~~~~~--~~~~~ 101 (169)
+.+...+++++|.+.. +..+ ..++.|.+|.+++|.|+.+.+.+.. ++.+. +.+.+| .+.++.+ -+..+
T Consensus 41 ~d~~d~iDLtdNdl~~------l~~l-p~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~ 112 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRK------LDNL-PHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASC 112 (233)
T ss_pred ccccceecccccchhh------cccC-CCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcchhccC
Confidence 4566778888865543 1222 5677889999999999988776555 45688 888887 4554432 44577
Q ss_pred CccCEEecCCCCCCCCcch----hhhcCCCCceEeccCC
Q 038441 102 KSFKILNLSSCSKLENVPE----NLGKVESLEELDISRT 136 (169)
Q Consensus 102 ~~L~~L~l~~~~~~~~~~~----~~~~l~~L~~L~l~~n 136 (169)
++|++|.+-+ |.+..... .++.+++|+.||+..-
T Consensus 113 p~L~~Ltll~-Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 113 PKLEYLTLLG-NPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred CccceeeecC-CchhcccCceeEEEEecCcceEeehhhh
Confidence 8888888877 45544433 3677888888887653
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.94 E-value=2e-07 Score=74.52 Aligned_cols=116 Identities=26% Similarity=0.231 Sum_probs=78.7
Q ss_pred ccccccCchhhcCCCCccEEEecCCCCCCCCCCCCccccccCCCCccEEEeeCCcCcccccc-cccccceE-EEeccccc
Q 038441 13 LLKFRLFPEIMGRMEHLLVLRLLGTAIRGLPICLKLEKFSKSMKSLTMLILDGTTIRELPLS-VELLTGLL-LNLKDWQY 90 (169)
Q Consensus 13 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~lp~~-~~~~~~L~-l~l~~~~~ 90 (169)
|+.+..+-.++.-++.++.|++++|.++. |..+ ..++.|++|++++|.++.+|.- ...+ .|+ +.+.+| -
T Consensus 173 yN~L~~mD~SLqll~ale~LnLshNk~~~---v~~L----r~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN-~ 243 (1096)
T KOG1859|consen 173 YNRLVLMDESLQLLPALESLNLSHNKFTK---VDNL----RRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNN-A 243 (1096)
T ss_pred hhhHHhHHHHHHHHHHhhhhccchhhhhh---hHHH----Hhcccccccccccchhccccccchhhh-hheeeeeccc-H
Confidence 34555566667778888899999966655 3222 5667889999999988887753 2223 378 888876 4
Q ss_pred CCccccccccCCccCEEecCCCCCCCCcc--hhhhcCCCCceEeccCCcce
Q 038441 91 LESLPSTINGLKSFKILNLSSCSKLENVP--ENLGKVESLEELDISRTAIR 139 (169)
Q Consensus 91 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~n~l~ 139 (169)
...+. ++.++.+|+.|+++. |.+.... ..++.+..|+.|.+.+|.+-
T Consensus 244 l~tL~-gie~LksL~~LDlsy-Nll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 244 LTTLR-GIENLKSLYGLDLSY-NLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred HHhhh-hHHhhhhhhccchhH-hhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 44332 567888888898887 4444332 23566778888888888654
No 52
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.93 E-value=8.5e-06 Score=60.09 Aligned_cols=155 Identities=17% Similarity=0.169 Sum_probs=101.5
Q ss_pred CCCCcEEeeCCccccc----cCchhhcCCCCccEEEecCCCCCCCCCCCCccccc----------cCCCCccEEEeeCCc
Q 038441 2 LKFPSTLNLFGLLKFR----LFPEIMGRMEHLLVLRLLGTAIRGLPICLKLEKFS----------KSMKSLTMLILDGTT 67 (169)
Q Consensus 2 l~~l~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~----------~~~~~L~~L~l~~~~ 67 (169)
...+++++++++..-. .+.+.+..-++|++.+++. -+++ ...+++| .+.++|+.+++++|-
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd-~ftG----R~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSD-MFTG----RLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHh-hhcC----CcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 3567788888865322 2334566677888877775 3333 2222333 556689999999997
Q ss_pred Cc-ccccc----cccccceE-EEecccccCCcccc-------------ccccCCccCEEecCCCCCCCCcch-----hhh
Q 038441 68 IR-ELPLS----VELLTGLL-LNLKDWQYLESLPS-------------TINGLKSFKILNLSSCSKLENVPE-----NLG 123 (169)
Q Consensus 68 ~~-~lp~~----~~~~~~L~-l~l~~~~~~~~~~~-------------~~~~~~~L~~L~l~~~~~~~~~~~-----~~~ 123 (169)
+. .-++. +..+..|+ |.+.+|.....-.. .+..-+.|+++.... |.....+. .+.
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r-Nrlen~ga~~~A~~~~ 182 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR-NRLENGGATALAEAFQ 182 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec-cccccccHHHHHHHHH
Confidence 76 44433 55678899 99998843322111 223446789888776 55544433 466
Q ss_pred cCCCCceEeccCCcce-----ecChhhhcCCCcceEEcccccccccc
Q 038441 124 KVESLEELDISRTAIR-----QLPTSIFLLKNLKAVDHYHLHHGICA 165 (169)
Q Consensus 124 ~l~~L~~L~l~~n~l~-----~~~~~~~~l~~L~~L~~~~l~~~~~~ 165 (169)
.++.|+.+.+..|.|. .+...+..+++|+.|| +.||.|.
T Consensus 183 ~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLd---l~DNtft 226 (382)
T KOG1909|consen 183 SHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLD---LRDNTFT 226 (382)
T ss_pred hccccceEEEecccccCchhHHHHHHHHhCCcceeee---cccchhh
Confidence 7789999999999775 2334678899999999 7777664
No 53
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=1.4e-06 Score=63.23 Aligned_cols=111 Identities=21% Similarity=0.199 Sum_probs=59.9
Q ss_pred CCCccccc-----cCCCCccEEEeeCCcCc--ccccccccc-cceE-EEecccccCCc---cccccccCCccCEEecCCC
Q 038441 45 CLKLEKFS-----KSMKSLTMLILDGTTIR--ELPLSVELL-TGLL-LNLKDWQYLES---LPSTINGLKSFKILNLSSC 112 (169)
Q Consensus 45 ~~~l~~~~-----~~~~~L~~L~l~~~~~~--~lp~~~~~~-~~L~-l~l~~~~~~~~---~~~~~~~~~~L~~L~l~~~ 112 (169)
|+++++.. ..+..|..|++++|..+ .+...+... ..+. +++++++..-. +..-...+++|.+|+++.|
T Consensus 244 ~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~ 323 (419)
T KOG2120|consen 244 CSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDS 323 (419)
T ss_pred ccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccc
Confidence 66666555 56667777777777544 222222221 2455 66666532211 1112346777777887776
Q ss_pred CCCCC-cchhhhcCCCCceEeccCCcce--ecChhhhcCCCcceEE
Q 038441 113 SKLEN-VPENLGKVESLEELDISRTAIR--QLPTSIFLLKNLKAVD 155 (169)
Q Consensus 113 ~~~~~-~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~l~~L~~L~ 155 (169)
..+.. .-.++..++.|+++.++.|+.- ..--.+...+.+.+|+
T Consensus 324 v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLd 369 (419)
T KOG2120|consen 324 VMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLD 369 (419)
T ss_pred cccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEE
Confidence 54433 2334666777777777776532 1111234556666666
No 54
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=4.1e-06 Score=60.87 Aligned_cols=127 Identities=24% Similarity=0.213 Sum_probs=84.3
Q ss_pred CCcEEeeCCccccccCch--hhcCCCCccEEEecCCCCCCCCCCCCccccc-cCCCCccEEEeeCC--cCc--ccccccc
Q 038441 4 FPSTLNLFGLLKFRLFPE--IMGRMEHLLVLRLLGTAIRGLPICLKLEKFS-KSMKSLTMLILDGT--TIR--ELPLSVE 76 (169)
Q Consensus 4 ~l~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~-~~~~~L~~L~l~~~--~~~--~lp~~~~ 76 (169)
+|+.|+++.|+.++.... .+..++.|..|+++++.+.. ..++..- .-.++++.|+++++ ++. ++.--..
T Consensus 235 ~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~----~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~ 310 (419)
T KOG2120|consen 235 NLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFT----EKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVR 310 (419)
T ss_pred cceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccc----hhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHH
Confidence 578899999998887654 36789999999999965544 2233222 44467788888876 222 2322245
Q ss_pred cccceE-EEecccccCCc-cccccccCCccCEEecCCCCCCCCcch---hhhcCCCCceEeccCC
Q 038441 77 LLTGLL-LNLKDWQYLES-LPSTINGLKSFKILNLSSCSKLENVPE---NLGKVESLEELDISRT 136 (169)
Q Consensus 77 ~~~~L~-l~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~l~~L~~L~l~~n 136 (169)
.++++. +++++|..+.. ....+...+.|+++.++.|-.+ .|. .+...++|.+|+..++
T Consensus 311 rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 311 RCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEeccc
Confidence 678888 88887744432 2345667788888888877332 333 3566778888887664
No 55
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.75 E-value=6.5e-06 Score=63.47 Aligned_cols=83 Identities=29% Similarity=0.342 Sum_probs=33.1
Q ss_pred CCCccEEEeeCCcCcccccccccccceE-EEecccccCCccccccccCCccCEEecCCCCCCCCcchhhhcCCCCceEec
Q 038441 55 MKSLTMLILDGTTIRELPLSVELLTGLL-LNLKDWQYLESLPSTINGLKSFKILNLSSCSKLENVPENLGKVESLEELDI 133 (169)
Q Consensus 55 ~~~L~~L~l~~~~~~~lp~~~~~~~~L~-l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 133 (169)
+.+++++++.+|.+..+...+..+++|+ +++++| .+..+. .+..++.|+.|++.+ |.+..+.. +..+..|+.+++
T Consensus 94 ~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N-~I~~i~-~l~~l~~L~~L~l~~-N~i~~~~~-~~~l~~L~~l~l 169 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFN-KITKLE-GLSTLTLLKELNLSG-NLISDISG-LESLKSLKLLDL 169 (414)
T ss_pred ccceeeeeccccchhhcccchhhhhcchheecccc-cccccc-chhhccchhhheecc-CcchhccC-CccchhhhcccC
Confidence 3444444444444444433234444444 444443 222221 122333344444444 33333321 223444444444
Q ss_pred cCCcceec
Q 038441 134 SRTAIRQL 141 (169)
Q Consensus 134 ~~n~l~~~ 141 (169)
++|.++.+
T Consensus 170 ~~n~i~~i 177 (414)
T KOG0531|consen 170 SYNRIVDI 177 (414)
T ss_pred Ccchhhhh
Confidence 44444433
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.50 E-value=0.00021 Score=49.25 Aligned_cols=105 Identities=18% Similarity=0.282 Sum_probs=75.3
Q ss_pred cCCCCccEEEeeCCcCcccccccccccceE-EEecccccCCccccccccCCccCEEecCCCCCCCCcch--hhhcCCCCc
Q 038441 53 KSMKSLTMLILDGTTIRELPLSVELLTGLL-LNLKDWQYLESLPSTINGLKSFKILNLSSCSKLENVPE--NLGKVESLE 129 (169)
Q Consensus 53 ~~~~~L~~L~l~~~~~~~lp~~~~~~~~L~-l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~l~~L~ 129 (169)
....+...+++++|.+..++ .+..++.|. +.+.+|+.....|..-..+++|..|.+.+ |.+..+.. .+..++.|+
T Consensus 39 ~~~d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn-Nsi~~l~dl~pLa~~p~L~ 116 (233)
T KOG1644|consen 39 ATLDQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN-NSIQELGDLDPLASCPKLE 116 (233)
T ss_pred ccccccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecC-cchhhhhhcchhccCCccc
Confidence 44557788999999877653 456777888 88998855544444334567899999998 55555432 367889999
Q ss_pred eEeccCCcceecCh----hhhcCCCcceEEcccc
Q 038441 130 ELDISRTAIRQLPT----SIFLLKNLKAVDHYHL 159 (169)
Q Consensus 130 ~L~l~~n~l~~~~~----~~~~l~~L~~L~~~~l 159 (169)
+|.+-+|.+..-.. .+..++++++||..+.
T Consensus 117 ~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 117 YLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 99999998874332 3578899999994443
No 57
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.19 E-value=1.3e-05 Score=57.83 Aligned_cols=95 Identities=22% Similarity=0.179 Sum_probs=66.7
Q ss_pred CCCcEEeeCCccccccCchhhcCCCCccEEEecCCCCCCCCCCCCccccc--cCCCCccEEEeeCCcCccccc--ccccc
Q 038441 3 KFPSTLNLFGLLKFRLFPEIMGRMEHLLVLRLLGTAIRGLPICLKLEKFS--KSMKSLTMLILDGTTIRELPL--SVELL 78 (169)
Q Consensus 3 ~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~--~~~~~L~~L~l~~~~~~~lp~--~~~~~ 78 (169)
.+.++|+.++|. +.++.- ...|+.|++|.|+-|.++. +. ...+.|+.||+..|.|..+-+ .+.++
T Consensus 19 ~~vkKLNcwg~~-L~DIsi-c~kMp~lEVLsLSvNkIss---------L~pl~rCtrLkElYLRkN~I~sldEL~YLknl 87 (388)
T KOG2123|consen 19 ENVKKLNCWGCG-LDDISI-CEKMPLLEVLSLSVNKISS---------LAPLQRCTRLKELYLRKNCIESLDELEYLKNL 87 (388)
T ss_pred HHhhhhcccCCC-ccHHHH-HHhcccceeEEeecccccc---------chhHHHHHHHHHHHHHhcccccHHHHHHHhcC
Confidence 456788899875 454432 4578999999999855543 33 556678888898998887654 37888
Q ss_pred cceE-EEecccccCCcccc-----ccccCCccCEEe
Q 038441 79 TGLL-LNLKDWQYLESLPS-----TINGLKSFKILN 108 (169)
Q Consensus 79 ~~L~-l~l~~~~~~~~~~~-----~~~~~~~L~~L~ 108 (169)
++|+ |.+..|.-.+..++ .+.-+++|+.|+
T Consensus 88 psLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 88 PSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred chhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 8888 88888766655443 334577777775
No 58
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.93 E-value=0.0065 Score=38.70 Aligned_cols=114 Identities=12% Similarity=0.223 Sum_probs=43.9
Q ss_pred hcCCCCccEEEecCCCCCCCCCCCCccccc-cCCCCccEEEeeCCcCcccccc-cccccceE-EEecccccCCccc-ccc
Q 038441 23 MGRMEHLLVLRLLGTAIRGLPICLKLEKFS-KSMKSLTMLILDGTTIRELPLS-VELLTGLL-LNLKDWQYLESLP-STI 98 (169)
Q Consensus 23 ~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~-~~~~~L~~L~l~~~~~~~lp~~-~~~~~~L~-l~l~~~~~~~~~~-~~~ 98 (169)
|..+.+|+.+.+.. .+ ..+.+-. ....+++.+.+..+ +..++.. +..+++++ +.+.. ....++ ..+
T Consensus 8 F~~~~~l~~i~~~~-~~------~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F 77 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TI------KKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAF 77 (129)
T ss_dssp TTT-TT--EEEETS-T--------EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTT
T ss_pred HhCCCCCCEEEECC-Ce------eEeChhhccccccccccccccc-ccccceeeeecccccccccccc--cccccccccc
Confidence 45566666666653 11 1111111 44456667666653 5555443 55555677 76654 222233 244
Q ss_pred ccCCccCEEecCCCCCCCCcch-hhhcCCCCceEeccCCcceecCh-hhhcCCC
Q 038441 99 NGLKSFKILNLSSCSKLENVPE-NLGKVESLEELDISRTAIRQLPT-SIFLLKN 150 (169)
Q Consensus 99 ~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~ 150 (169)
..+++++.+.+.. + +..++. .+.++ .++.+.+.. .+..++. .+.+.++
T Consensus 78 ~~~~~l~~i~~~~-~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~ 127 (129)
T PF13306_consen 78 SNCTNLKNIDIPS-N-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTK 127 (129)
T ss_dssp TT-TTECEEEETT-T--BEEHTTTTTT--T--EEE-TT-B-SS----GGG----
T ss_pred cccccccccccCc-c-ccEEchhhhcCC-CceEEEECC-CccEECCcccccccc
Confidence 4567777777654 2 333332 34554 666666554 3444433 3344333
No 59
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.92 E-value=0.00051 Score=29.90 Aligned_cols=21 Identities=29% Similarity=0.438 Sum_probs=14.4
Q ss_pred CccEEEeeCCcCccccccccc
Q 038441 57 SLTMLILDGTTIRELPLSVEL 77 (169)
Q Consensus 57 ~L~~L~l~~~~~~~lp~~~~~ 77 (169)
+|++|++++|+++.+|++++.
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 467777777777777766543
No 60
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.89 E-value=0.00054 Score=29.83 Aligned_cols=21 Identities=33% Similarity=0.490 Sum_probs=14.2
Q ss_pred CCceEeccCCcceecChhhhc
Q 038441 127 SLEELDISRTAIRQLPTSIFL 147 (169)
Q Consensus 127 ~L~~L~l~~n~l~~~~~~~~~ 147 (169)
+|++|++++|+++.+|..+++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 367777777777777765443
No 61
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.86 E-value=5.1e-05 Score=57.42 Aligned_cols=33 Identities=21% Similarity=0.187 Sum_probs=17.2
Q ss_pred CCcEEeeCCccccccCc--hhhcCCCCccEEEecC
Q 038441 4 FPSTLNLFGLLKFRLFP--EIMGRMEHLLVLRLLG 36 (169)
Q Consensus 4 ~l~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~ 36 (169)
+|+.|++++|..+..-+ .....+++++.|.+.+
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~g 173 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYG 173 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhc
Confidence 45566666665444433 2234456666665555
No 62
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.80 E-value=0.00038 Score=50.92 Aligned_cols=63 Identities=22% Similarity=0.398 Sum_probs=30.3
Q ss_pred hhhcCCCCccEEEecCCCCCCCCCCCCccccccCCCCccEEEeeCCcCc--ccccccccccceE-EEeccc
Q 038441 21 EIMGRMEHLLVLRLLGTAIRGLPICLKLEKFSKSMKSLTMLILDGTTIR--ELPLSVELLTGLL-LNLKDW 88 (169)
Q Consensus 21 ~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~--~lp~~~~~~~~L~-l~l~~~ 88 (169)
..+.+||.|++|+++.|.+.. .|..+|....+|+.|-+.+..+. .....+..+|.++ ++++.|
T Consensus 91 ~ile~lP~l~~LNls~N~L~s-----~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 91 AILEQLPALTTLNLSCNSLSS-----DIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred HHHhcCccceEeeccCCcCCC-----ccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 334556666666666655542 23334333445555555554332 3333344455555 555544
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.69 E-value=0.0011 Score=47.29 Aligned_cols=98 Identities=27% Similarity=0.373 Sum_probs=42.8
Q ss_pred CCccEEEeeCCcCcccccccccccceE-EEeccc--ccCCccccccccCCccCEEecCCCCCCCCcc--hhhhcCCCCce
Q 038441 56 KSLTMLILDGTTIRELPLSVELLTGLL-LNLKDW--QYLESLPSTINGLKSFKILNLSSCSKLENVP--ENLGKVESLEE 130 (169)
Q Consensus 56 ~~L~~L~l~~~~~~~lp~~~~~~~~L~-l~l~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~ 130 (169)
..|+.+.+.+..++.+ ..+..+++|+ +.++.| +....++--+..+++|+++.+++ |.+..+. ..+..+.+|..
T Consensus 43 ~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~-Nki~~lstl~pl~~l~nL~~ 120 (260)
T KOG2739|consen 43 VELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSG-NKIKDLSTLRPLKELENLKS 120 (260)
T ss_pred cchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecC-Cccccccccchhhhhcchhh
Confidence 3344444444433322 1233444555 555555 23333333333445666666665 3332211 12334444555
Q ss_pred EeccCCcceecCh----hhhcCCCcceEE
Q 038441 131 LDISRTAIRQLPT----SIFLLKNLKAVD 155 (169)
Q Consensus 131 L~l~~n~l~~~~~----~~~~l~~L~~L~ 155 (169)
|++..|..+.+-+ .+.-+++|++|+
T Consensus 121 Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 121 LDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred hhcccCCccccccHHHHHHHHhhhhcccc
Confidence 5655554442211 234455566555
No 64
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.66 E-value=0.00077 Score=51.28 Aligned_cols=141 Identities=19% Similarity=0.250 Sum_probs=70.7
Q ss_pred EEeeCCccccccCch--hhcCCCCccEEEecCCCCCCCCCCCCccccc-----cCCCCccEEEeeCC-cCccc--ccccc
Q 038441 7 TLNLFGLLKFRLFPE--IMGRMEHLLVLRLLGTAIRGLPICLKLEKFS-----KSMKSLTMLILDGT-TIREL--PLSVE 76 (169)
Q Consensus 7 ~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~-----~~~~~L~~L~l~~~-~~~~l--p~~~~ 76 (169)
++++.+|..+++..- .-..+..|+.+..+. |+.+++.+ .+..+|+++.+..+ +++.. ..--.
T Consensus 272 ~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~--------~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~r 343 (483)
T KOG4341|consen 272 KLNLQHCNQLTDEDLWLIACGCHALQVLCYSS--------CTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGR 343 (483)
T ss_pred ccchhhhccccchHHHHHhhhhhHhhhhcccC--------CCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhc
Confidence 444555655555431 123356666666666 44444333 55567777777776 44422 22233
Q ss_pred cccceE-EEecccccCCc--cccccccCCccCEEecCCCCCCCCc-----chhhhcCCCCceEeccCCcce--ecChhhh
Q 038441 77 LLTGLL-LNLKDWQYLES--LPSTINGLKSFKILNLSSCSKLENV-----PENLGKVESLEELDISRTAIR--QLPTSIF 146 (169)
Q Consensus 77 ~~~~L~-l~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~-----~~~~~~l~~L~~L~l~~n~l~--~~~~~~~ 146 (169)
+.++|+ +++..+..... +.+.-.+++.|+.+.++.|..+++. ...-..+..+..+-++++... ..-..+.
T Consensus 344 n~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~ 423 (483)
T KOG4341|consen 344 NCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLS 423 (483)
T ss_pred CChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHh
Confidence 455666 66665522211 1122235667777777766555443 122234556666666666543 2222334
Q ss_pred cCCCcceEE
Q 038441 147 LLKNLKAVD 155 (169)
Q Consensus 147 ~l~~L~~L~ 155 (169)
..++|+.++
T Consensus 424 ~c~~Leri~ 432 (483)
T KOG4341|consen 424 ICRNLERIE 432 (483)
T ss_pred hCcccceee
Confidence 444454443
No 65
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.51 E-value=0.0044 Score=45.02 Aligned_cols=129 Identities=14% Similarity=0.101 Sum_probs=67.4
Q ss_pred hhcCCCCccEEEecCCCCCCCCCCCCccccc---cCCCCccEEEeeCCcCcccccc-c-------------ccccceE-E
Q 038441 22 IMGRMEHLLVLRLLGTAIRGLPICLKLEKFS---KSMKSLTMLILDGTTIRELPLS-V-------------ELLTGLL-L 83 (169)
Q Consensus 22 ~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~---~~~~~L~~L~l~~~~~~~lp~~-~-------------~~~~~L~-l 83 (169)
.+..|+.++.+++++|+++. ...+.+. ...+.+.+|++.+|.+..+... + ..-|.|+ +
T Consensus 87 aLlkcp~l~~v~LSDNAfg~----~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~v 162 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGS----EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVV 162 (388)
T ss_pred HHhcCCcceeeeccccccCc----ccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEE
Confidence 34567888888888887765 2222222 6667788888887766533211 1 2345666 6
Q ss_pred EecccccCCcc----ccccccCCccCEEecCCCCCCCCc------chhhhcCCCCceEeccCCccee-----cChhhhcC
Q 038441 84 NLKDWQYLESL----PSTINGLKSFKILNLSSCSKLENV------PENLGKVESLEELDISRTAIRQ-----LPTSIFLL 148 (169)
Q Consensus 84 ~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~------~~~~~~l~~L~~L~l~~n~l~~-----~~~~~~~l 148 (169)
....|+.-..- ...+.....|+.+.+.. |.|..- -..+..+.+|+.||+..|-++. +...+..+
T Consensus 163 icgrNRlengs~~~~a~~l~sh~~lk~vki~q-NgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W 241 (388)
T COG5238 163 ICGRNRLENGSKELSAALLESHENLKEVKIQQ-NGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEW 241 (388)
T ss_pred EeccchhccCcHHHHHHHHHhhcCceeEEeee-cCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhccc
Confidence 66665332210 11222234566665554 233211 1123456677777777776652 22233455
Q ss_pred CCcceEE
Q 038441 149 KNLKAVD 155 (169)
Q Consensus 149 ~~L~~L~ 155 (169)
+.|+.|.
T Consensus 242 ~~lrEL~ 248 (388)
T COG5238 242 NLLRELR 248 (388)
T ss_pred chhhhcc
Confidence 5555555
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.28 E-value=0.034 Score=35.31 Aligned_cols=111 Identities=11% Similarity=0.205 Sum_probs=53.6
Q ss_pred CCCcEEeeCCccccccCchh-hcCCCCccEEEecCCCCCCCCCCCCccccc-cCCCCccEEEeeCCcCcccccc-ccccc
Q 038441 3 KFPSTLNLFGLLKFRLFPEI-MGRMEHLLVLRLLGTAIRGLPICLKLEKFS-KSMKSLTMLILDGTTIRELPLS-VELLT 79 (169)
Q Consensus 3 ~~l~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~-~~~~~L~~L~l~~~~~~~lp~~-~~~~~ 79 (169)
..++.+.+.. .++.+++. |..+++++.+.+..+ +.. +.... ...+.++.+.+.. .+..++.. +..++
T Consensus 12 ~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~~-~~~------i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 12 SNLESITFPN--TIKKIGENAFSNCTSLKSINFPNN-LTS------IGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT 81 (129)
T ss_dssp TT--EEEETS--T--EE-TTTTTT-TT-SEEEESST-TSC------E-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred CCCCEEEECC--CeeEeChhhccccccccccccccc-ccc------cceeeeecccccccccccc-cccccccccccccc
Confidence 4677777764 35566544 777889999999873 222 22222 5566789999865 55666554 55688
Q ss_pred ceE-EEecccccCCcccc-ccccCCccCEEecCCCCCCCCcc-hhhhcCCCC
Q 038441 80 GLL-LNLKDWQYLESLPS-TINGLKSFKILNLSSCSKLENVP-ENLGKVESL 128 (169)
Q Consensus 80 ~L~-l~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L 128 (169)
+++ +.+..+ ...++. .+.++ .++.+.+.. .+..++ ..|.++.+|
T Consensus 82 ~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~--~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 82 NLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS--NITKIEENAFKNCTKL 128 (129)
T ss_dssp TECEEEETTT---BEEHTTTTTT--T--EEE-TT--B-SS----GGG-----
T ss_pred cccccccCcc--ccEEchhhhcCC-CceEEEECC--CccEECCccccccccC
Confidence 999 988753 344443 55565 899888875 333443 456666655
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.25 E-value=0.0032 Score=45.03 Aligned_cols=59 Identities=25% Similarity=0.394 Sum_probs=27.2
Q ss_pred cCCCCccEEEeeCC--cCc-ccccccccccceE-EEecccccCCccc--cccccCCccCEEecCCC
Q 038441 53 KSMKSLTMLILDGT--TIR-ELPLSVELLTGLL-LNLKDWQYLESLP--STINGLKSFKILNLSSC 112 (169)
Q Consensus 53 ~~~~~L~~L~l~~~--~~~-~lp~~~~~~~~L~-l~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~ 112 (169)
..+++|+.|.++.| ++. .++.-...+++|+ +++++|. +..+. ..+..+.+|..|++..|
T Consensus 62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lstl~pl~~l~nL~~Ldl~n~ 126 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLSTLRPLKELENLKSLDLFNC 126 (260)
T ss_pred CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-cccccccchhhhhcchhhhhcccC
Confidence 34455666666665 333 3333333445566 6666552 22111 12233444555555544
No 68
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.99 E-value=0.0054 Score=24.81 Aligned_cols=15 Identities=27% Similarity=0.364 Sum_probs=6.0
Q ss_pred CccEEEeeCCcCccc
Q 038441 57 SLTMLILDGTTIREL 71 (169)
Q Consensus 57 ~L~~L~l~~~~~~~l 71 (169)
+|+.|++++|+++.+
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 345555555554444
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.92 E-value=0.00054 Score=49.70 Aligned_cols=99 Identities=26% Similarity=0.356 Sum_probs=60.3
Q ss_pred CCCCccEEEecCCCCCCCCCCCCccccccCCCCccEEEeeCCcCcccccccccccceE-EEecccccCCcccc--ccccC
Q 038441 25 RMEHLLVLRLLGTAIRGLPICLKLEKFSKSMKSLTMLILDGTTIRELPLSVELLTGLL-LNLKDWQYLESLPS--TINGL 101 (169)
Q Consensus 25 ~l~~L~~L~l~~n~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~lp~~~~~~~~L~-l~l~~~~~~~~~~~--~~~~~ 101 (169)
.+.+.+.|+..++.+.++..| ..++.|+.|.++-|.|+.+. .+..++.|+ +.+..| .+..+.+ -+.++
T Consensus 17 dl~~vkKLNcwg~~L~DIsic-------~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN-~I~sldEL~YLknl 87 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDISIC-------EKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKN-CIESLDELEYLKNL 87 (388)
T ss_pred HHHHhhhhcccCCCccHHHHH-------HhcccceeEEeeccccccch-hHHHHHHHHHHHHHhc-ccccHHHHHHHhcC
Confidence 355667778888555443222 56777888888888888763 356677777 777776 3333332 34567
Q ss_pred CccCEEecCCCCCCCCcch-----hhhcCCCCceEe
Q 038441 102 KSFKILNLSSCSKLENVPE-----NLGKVESLEELD 132 (169)
Q Consensus 102 ~~L~~L~l~~~~~~~~~~~-----~~~~l~~L~~L~ 132 (169)
++|+.|-+.+|.....-+. .+.-+++|+.||
T Consensus 88 psLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 88 PSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred chhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 7777777766544443332 234455555554
No 70
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.52 E-value=0.0053 Score=45.13 Aligned_cols=83 Identities=20% Similarity=0.181 Sum_probs=45.0
Q ss_pred CCCccEEEecCCCCCCCCCCCCccccccCCCCccEEEeeCCcCccccccc-ccccceE-EEecccccCC-ccccccccCC
Q 038441 26 MEHLLVLRLLGTAIRGLPICLKLEKFSKSMKSLTMLILDGTTIRELPLSV-ELLTGLL-LNLKDWQYLE-SLPSTINGLK 102 (169)
Q Consensus 26 l~~L~~L~l~~n~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~lp~~~-~~~~~L~-l~l~~~~~~~-~~~~~~~~~~ 102 (169)
...++++++.+|.+++ |..+..+-..+|.+++|+++.|++...-..+ -...+|+ +-+.+..... .....+..++
T Consensus 70 ~~~v~elDL~~N~iSd---WseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP 146 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISD---WSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLP 146 (418)
T ss_pred hhhhhhhhcccchhcc---HHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcch
Confidence 4566677777766665 4444444466777777777777665322222 2445566 5555432211 1223344555
Q ss_pred ccCEEecCC
Q 038441 103 SFKILNLSS 111 (169)
Q Consensus 103 ~L~~L~l~~ 111 (169)
.++.|.++.
T Consensus 147 ~vtelHmS~ 155 (418)
T KOG2982|consen 147 KVTELHMSD 155 (418)
T ss_pred hhhhhhhcc
Confidence 666666655
No 71
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.38 E-value=0.055 Score=39.54 Aligned_cols=136 Identities=13% Similarity=0.121 Sum_probs=88.0
Q ss_pred CCCCcEEeeCCccccccCch----hhcCCCCccEEEecCCCCCCCCCCCCcc----ccc-----cCCCCccEEEeeCCcC
Q 038441 2 LKFPSTLNLFGLLKFRLFPE----IMGRMEHLLVLRLLGTAIRGLPICLKLE----KFS-----KSMKSLTMLILDGTTI 68 (169)
Q Consensus 2 l~~l~~L~l~~~~~~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~l~----~~~-----~~~~~L~~L~l~~~~~ 68 (169)
++.++..+++++-.-...|+ .++.-..|.+|++++|.+..+.. ..+. .+. ..-|.|+......|.+
T Consensus 91 cp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG-~rigkal~~la~nKKaa~kp~Le~vicgrNRl 169 (388)
T COG5238 91 CPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAG-GRIGKALFHLAYNKKAADKPKLEVVICGRNRL 169 (388)
T ss_pred CCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccch-hHHHHHHHHHHHHhhhccCCCceEEEeccchh
Confidence 56788999999776555554 35667889999999987765321 1111 111 4567788888888877
Q ss_pred cccccc-----cccccceE-EEecccccCCc-----cccccccCCccCEEecCCCCCCCCc-----chhhhcCCCCceEe
Q 038441 69 RELPLS-----VELLTGLL-LNLKDWQYLES-----LPSTINGLKSFKILNLSSCSKLENV-----PENLGKVESLEELD 132 (169)
Q Consensus 69 ~~lp~~-----~~~~~~L~-l~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~-----~~~~~~l~~L~~L~ 132 (169)
...+.. +.....|+ +.+..|.+-.. .-.+++.+.+|+.|+++.| ..+.. ...++..+.|+.|.
T Consensus 170 engs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDN-tft~~gS~~La~al~~W~~lrEL~ 248 (388)
T COG5238 170 ENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDN-TFTLEGSRYLADALCEWNLLRELR 248 (388)
T ss_pred ccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeecccc-chhhhhHHHHHHHhcccchhhhcc
Confidence 655432 33344677 88887633222 1124566789999999984 43322 22345566789999
Q ss_pred ccCCcce
Q 038441 133 ISRTAIR 139 (169)
Q Consensus 133 l~~n~l~ 139 (169)
+..|-++
T Consensus 249 lnDClls 255 (388)
T COG5238 249 LNDCLLS 255 (388)
T ss_pred ccchhhc
Confidence 9888765
No 72
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.16 E-value=0.0046 Score=48.22 Aligned_cols=113 Identities=23% Similarity=0.211 Sum_probs=59.6
Q ss_pred CCCcEEeeCCcccccc--CchhhcCCCCccEEEecCCCCCCCCCCCCccccccCCCCccEEEeeCCc-Cccc-ccc-ccc
Q 038441 3 KFPSTLNLFGLLKFRL--FPEIMGRMEHLLVLRLLGTAIRGLPICLKLEKFSKSMKSLTMLILDGTT-IREL-PLS-VEL 77 (169)
Q Consensus 3 ~~l~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~l-p~~-~~~ 77 (169)
++++.|.+.+|..+.. +-.....+++|+.|+++++.............+....++++.++++++. ++.. -.. ...
T Consensus 188 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~ 267 (482)
T KOG1947|consen 188 PLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASR 267 (482)
T ss_pred chhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhh
Confidence 5667777777776666 3344556788888888763111100000000111444677777777775 5522 122 223
Q ss_pred ccceE-EEecccccCCc--cccccccCCccCEEecCCCCCC
Q 038441 78 LTGLL-LNLKDWQYLES--LPSTINGLKSFKILNLSSCSKL 115 (169)
Q Consensus 78 ~~~L~-l~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~ 115 (169)
+++|+ +.+.+|..+.. +-.....++.|++|++++|..+
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 66777 77665532211 1223345677788877776554
No 73
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=95.09 E-value=0.018 Score=25.85 Aligned_cols=20 Identities=25% Similarity=0.340 Sum_probs=14.3
Q ss_pred CCccEEEeeCCcCccccccc
Q 038441 56 KSLTMLILDGTTIRELPLSV 75 (169)
Q Consensus 56 ~~L~~L~l~~~~~~~lp~~~ 75 (169)
++|++|++++|.++.+|+..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 56777777777777777653
No 74
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=95.09 E-value=0.018 Score=25.85 Aligned_cols=20 Identities=25% Similarity=0.340 Sum_probs=14.3
Q ss_pred CCccEEEeeCCcCccccccc
Q 038441 56 KSLTMLILDGTTIRELPLSV 75 (169)
Q Consensus 56 ~~L~~L~l~~~~~~~lp~~~ 75 (169)
++|++|++++|.++.+|+..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 56777777777777777653
No 75
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.45 E-value=0.015 Score=40.24 Aligned_cols=78 Identities=19% Similarity=0.208 Sum_probs=35.6
Q ss_pred ccEEEecCCCCCCCCCCCCccccccCCCCccEEEeeCC-cCcc--cccccccccceE-EEecccccCCccc-cccccCCc
Q 038441 29 LLVLRLLGTAIRGLPICLKLEKFSKSMKSLTMLILDGT-TIRE--LPLSVELLTGLL-LNLKDWQYLESLP-STINGLKS 103 (169)
Q Consensus 29 L~~L~l~~n~l~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~--lp~~~~~~~~L~-l~l~~~~~~~~~~-~~~~~~~~ 103 (169)
++.++-++.+++. ..++.+ ..++.++.|.+.+| .+.. +..--+..++|+ |++++|..+..-. ..+..+++
T Consensus 103 IeaVDAsds~I~~----eGle~L-~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lkn 177 (221)
T KOG3864|consen 103 IEAVDASDSSIMY----EGLEHL-RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKN 177 (221)
T ss_pred EEEEecCCchHHH----HHHHHH-hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhh
Confidence 4555555544333 222222 44555555555555 3321 111112345666 7777665444322 23445566
Q ss_pred cCEEecCC
Q 038441 104 FKILNLSS 111 (169)
Q Consensus 104 L~~L~l~~ 111 (169)
|+.|.+.+
T Consensus 178 Lr~L~l~~ 185 (221)
T KOG3864|consen 178 LRRLHLYD 185 (221)
T ss_pred hHHHHhcC
Confidence 66665543
No 76
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=92.25 E-value=0.023 Score=44.32 Aligned_cols=83 Identities=23% Similarity=0.272 Sum_probs=35.3
Q ss_pred CCCcEEeeCC-ccccccCc----hhhcCCCCccEEEecCCC-CCCCCCCCCccccccCCCCccEEEeeCCc-Cc--cccc
Q 038441 3 KFPSTLNLFG-LLKFRLFP----EIMGRMEHLLVLRLLGTA-IRGLPICLKLEKFSKSMKSLTMLILDGTT-IR--ELPL 73 (169)
Q Consensus 3 ~~l~~L~l~~-~~~~~~~~----~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~--~lp~ 73 (169)
+.|+.|++.+ |......+ .....+++|+.+++++.. +++ ..++.+....++|+.|.+..+. ++ .+-.
T Consensus 214 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd----~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~ 289 (482)
T KOG1947|consen 214 PNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTD----IGLSALASRCPNLETLSLSNCSNLTDEGLVS 289 (482)
T ss_pred chhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCc----hhHHHHHhhCCCcceEccCCCCccchhHHHH
Confidence 4455666655 22222222 112334556666666533 222 1222222334455555544443 33 2222
Q ss_pred ccccccceE-EEecccc
Q 038441 74 SVELLTGLL-LNLKDWQ 89 (169)
Q Consensus 74 ~~~~~~~L~-l~l~~~~ 89 (169)
....+++|+ +++++|.
T Consensus 290 i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 290 IAERCPSLRELDLSGCH 306 (482)
T ss_pred HHHhcCcccEEeeecCc
Confidence 233445555 5555543
No 77
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=90.76 E-value=0.16 Score=22.98 Aligned_cols=18 Identities=28% Similarity=0.366 Sum_probs=13.6
Q ss_pred CCccEEEeeCCcCccccc
Q 038441 56 KSLTMLILDGTTIRELPL 73 (169)
Q Consensus 56 ~~L~~L~l~~~~~~~lp~ 73 (169)
++|++|++++|+++.+|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 357788888888887775
No 78
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.45 E-value=0.091 Score=36.56 Aligned_cols=77 Identities=18% Similarity=0.223 Sum_probs=36.2
Q ss_pred cEEEeeCCcCcc-cccccccccceE-EEecccccCCccc-cccc-cCCccCEEecCCCCCCCCcch-hhhcCCCCceEec
Q 038441 59 TMLILDGTTIRE-LPLSVELLTGLL-LNLKDWQYLESLP-STIN-GLKSFKILNLSSCSKLENVPE-NLGKVESLEELDI 133 (169)
Q Consensus 59 ~~L~l~~~~~~~-lp~~~~~~~~L~-l~l~~~~~~~~~~-~~~~-~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l 133 (169)
+.++.++..|.. --..+..+++++ +.+.+|....... +.+. -.++|+.|++++|..|++..- .+..+++|+.|.+
T Consensus 104 eaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l 183 (221)
T KOG3864|consen 104 EAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHL 183 (221)
T ss_pred EEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHh
Confidence 344444444431 123345555555 5555554333221 1122 234666666666666554432 3445555555555
Q ss_pred cC
Q 038441 134 SR 135 (169)
Q Consensus 134 ~~ 135 (169)
..
T Consensus 184 ~~ 185 (221)
T KOG3864|consen 184 YD 185 (221)
T ss_pred cC
Confidence 44
No 79
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=88.65 E-value=0.32 Score=21.70 Aligned_cols=16 Identities=19% Similarity=0.054 Sum_probs=10.1
Q ss_pred CCCcEEeeCCcccccc
Q 038441 3 KFPSTLNLFGLLKFRL 18 (169)
Q Consensus 3 ~~l~~L~l~~~~~~~~ 18 (169)
+.|++|++++|..+++
T Consensus 2 ~~L~~L~l~~C~~itD 17 (26)
T smart00367 2 PNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCEeCCCCCCCcCH
Confidence 4666777777665554
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.37 E-value=0.013 Score=41.73 Aligned_cols=52 Identities=13% Similarity=-0.001 Sum_probs=23.7
Q ss_pred cEEEeeCCcCcccccccccccceE-EEecccccCCccccccccCCccCEEecCC
Q 038441 59 TMLILDGTTIRELPLSVELLTGLL-LNLKDWQYLESLPSTINGLKSFKILNLSS 111 (169)
Q Consensus 59 ~~L~l~~~~~~~lp~~~~~~~~L~-l~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 111 (169)
..|+++.|.+..+|..++....+. ++...| .....|...+..+.+++++..+
T Consensus 68 ~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s~~k~~~~k~~e~k~ 120 (326)
T KOG0473|consen 68 VRLDLSKNQIKFLPKDAKQQRETVNAASHKN-NHSQQPKSQKKEPHPKKNEQKK 120 (326)
T ss_pred HHHhccHhhHhhChhhHHHHHHHHHHHhhcc-chhhCCccccccCCcchhhhcc
Confidence 344444444444555444444444 444433 3334444444445555544444
No 81
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=84.17 E-value=0.9 Score=20.48 Aligned_cols=16 Identities=25% Similarity=0.374 Sum_probs=10.3
Q ss_pred CCccEEEeeCCcCccc
Q 038441 56 KSLTMLILDGTTIREL 71 (169)
Q Consensus 56 ~~L~~L~l~~~~~~~l 71 (169)
.+|+.|++++|.|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4567777777766544
No 82
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=83.85 E-value=0.7 Score=20.02 Aligned_cols=14 Identities=43% Similarity=0.619 Sum_probs=9.4
Q ss_pred CCCceEeccCCcce
Q 038441 126 ESLEELDISRTAIR 139 (169)
Q Consensus 126 ~~L~~L~l~~n~l~ 139 (169)
++|++|++++|.++
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 56788888888876
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=78.63 E-value=0.034 Score=39.67 Aligned_cols=85 Identities=19% Similarity=0.202 Sum_probs=65.9
Q ss_pred cCCCCccEEEeeCCcCcccccccccccceE-EEecccccCCccccccccCCccCEEecCCCCCCCCcchhhhcCCCCceE
Q 038441 53 KSMKSLTMLILDGTTIRELPLSVELLTGLL-LNLKDWQYLESLPSTINGLKSFKILNLSSCSKLENVPENLGKVESLEEL 131 (169)
Q Consensus 53 ~~~~~L~~L~l~~~~~~~lp~~~~~~~~L~-l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 131 (169)
......+.|+++.|.+-.+-..+..++.+. ++++.| .+..+|..++....++.++... |.....|..+...++++++
T Consensus 39 ~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~skn-q~~~~~~d~~q~~e~~~~~~~~-n~~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKN-QIKFLPKDAKQQRETVNAASHK-NNHSQQPKSQKKEPHPKKN 116 (326)
T ss_pred hccceeeeehhhhhHHHhhccchHHHHHHHHHhccHh-hHhhChhhHHHHHHHHHHHhhc-cchhhCCccccccCCcchh
Confidence 555677888888888777767777777788 888876 6667787777777777777665 6778888888888999999
Q ss_pred eccCCcce
Q 038441 132 DISRTAIR 139 (169)
Q Consensus 132 ~l~~n~l~ 139 (169)
+.-.|.+.
T Consensus 117 e~k~~~~~ 124 (326)
T KOG0473|consen 117 EQKKTEFF 124 (326)
T ss_pred hhccCcch
Confidence 88888765
No 84
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=77.87 E-value=1.8 Score=19.67 Aligned_cols=13 Identities=23% Similarity=0.197 Sum_probs=7.6
Q ss_pred CccEEEecCCCCC
Q 038441 28 HLLVLRLLGTAIR 40 (169)
Q Consensus 28 ~L~~L~l~~n~l~ 40 (169)
+|++|++++|.++
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4566666665554
No 85
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=45.41 E-value=15 Score=29.80 Aligned_cols=65 Identities=22% Similarity=0.167 Sum_probs=37.5
Q ss_pred cCCCCccEEEecCCCCCCCCCCCCccccccCCCCccEEEeeCC--cCcccccccccc--cceE-EEecccccCC
Q 038441 24 GRMEHLLVLRLLGTAIRGLPICLKLEKFSKSMKSLTMLILDGT--TIRELPLSVELL--TGLL-LNLKDWQYLE 92 (169)
Q Consensus 24 ~~l~~L~~L~l~~n~l~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~lp~~~~~~--~~L~-l~l~~~~~~~ 92 (169)
.+.+.+..+.++.|++..+ +.+..+...+|+|..|++++| .+... .++..+ ..|+ +-+.+|....
T Consensus 215 ~n~p~i~sl~lsnNrL~~L---d~~sslsq~apklk~L~LS~N~~~~~~~-~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHL---DALSSLSQIAPKLKTLDLSHNHSKISSE-SELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred cCCcceeeeecccchhhch---hhhhHHHHhcchhheeecccchhhhcch-hhhhhhcCCCHHHeeecCCcccc
Confidence 3466777778888777653 334444467788888888888 22222 222222 2355 6677764443
Done!