Query 038441
Match_columns 169
No_of_seqs 129 out of 1474
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 19:17:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038441.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038441hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.9 4.1E-21 1.4E-25 141.7 12.9 153 2-155 126-307 (328)
2 4fcg_A Uncharacterized protein 99.8 3E-20 1E-24 137.1 14.2 152 2-155 103-283 (328)
3 1p9a_G Platelet glycoprotein I 99.8 4.4E-19 1.5E-23 128.8 14.5 155 3-168 31-188 (290)
4 4ezg_A Putative uncharacterize 99.8 5.7E-19 2E-23 121.3 11.9 149 3-165 44-194 (197)
5 2o6q_A Variable lymphocyte rec 99.8 3.4E-18 1.1E-22 122.8 14.6 149 4-155 38-211 (270)
6 3m19_A Variable lymphocyte rec 99.8 4.2E-18 1.4E-22 121.1 14.1 153 3-165 35-192 (251)
7 3rgz_A Protein brassinosteroid 99.8 4.4E-18 1.5E-22 138.0 15.5 77 79-155 632-710 (768)
8 3rgz_A Protein brassinosteroid 99.8 3.7E-18 1.3E-22 138.4 15.0 153 2-165 393-551 (768)
9 1ogq_A PGIP-2, polygalacturona 99.8 7.8E-19 2.7E-23 128.7 10.1 59 96-155 215-274 (313)
10 1ogq_A PGIP-2, polygalacturona 99.8 2.2E-18 7.6E-23 126.3 12.0 145 2-155 100-250 (313)
11 1ozn_A Reticulon 4 receptor; N 99.8 4.3E-18 1.5E-22 123.0 13.1 153 2-155 55-231 (285)
12 1ozn_A Reticulon 4 receptor; N 99.8 7.1E-18 2.4E-22 121.8 13.9 160 3-167 32-216 (285)
13 2o6q_A Variable lymphocyte rec 99.8 1E-17 3.5E-22 120.3 14.5 136 2-139 60-218 (270)
14 3rfs_A Internalin B, repeat mo 99.8 2.2E-17 7.5E-22 118.7 14.5 145 3-155 63-211 (272)
15 3rfs_A Internalin B, repeat mo 99.8 2E-17 6.8E-22 118.9 14.1 154 2-168 40-197 (272)
16 3zyi_A Leucine-rich repeat-con 99.8 8.8E-18 3E-22 128.7 12.9 100 55-155 195-296 (452)
17 3zyj_A Leucine-rich repeat-con 99.8 9.7E-18 3.3E-22 128.0 12.6 99 56-155 185-285 (440)
18 1p9a_G Platelet glycoprotein I 99.8 2.2E-17 7.5E-22 119.8 13.7 151 2-164 54-207 (290)
19 1xku_A Decorin; proteoglycan, 99.8 1.8E-17 6.2E-22 122.0 13.2 126 23-155 141-269 (330)
20 2ft3_A Biglycan; proteoglycan, 99.8 3E-17 1E-21 121.0 14.2 162 2-167 77-279 (332)
21 1h6u_A Internalin H; cell adhe 99.7 4.6E-17 1.6E-21 119.1 14.8 139 2-155 62-201 (308)
22 4eco_A Uncharacterized protein 99.7 6.2E-18 2.1E-22 134.6 10.7 159 4-165 82-343 (636)
23 3zyj_A Leucine-rich repeat-con 99.7 2.9E-17 9.9E-22 125.4 13.8 148 2-155 87-261 (440)
24 3o53_A Protein LRIM1, AGAP0063 99.7 1.2E-17 4E-22 122.6 11.2 110 53-167 117-229 (317)
25 2z66_A Variable lymphocyte rec 99.7 1.3E-17 4.5E-22 121.5 11.2 147 3-155 78-229 (306)
26 4eco_A Uncharacterized protein 99.7 3.3E-18 1.1E-22 136.1 8.5 153 2-167 205-392 (636)
27 1xku_A Decorin; proteoglycan, 99.7 1.1E-16 3.9E-21 117.7 16.1 155 2-168 75-256 (330)
28 2z62_A TOLL-like receptor 4, v 99.7 3.7E-17 1.3E-21 117.6 12.9 142 4-152 29-176 (276)
29 2z66_A Variable lymphocyte rec 99.7 1.6E-17 5.6E-22 121.0 11.1 161 3-167 28-214 (306)
30 2z7x_B TOLL-like receptor 1, v 99.7 3.7E-17 1.3E-21 127.0 13.6 151 2-164 323-480 (520)
31 4ecn_A Leucine-rich repeat pro 99.7 5.4E-18 1.8E-22 138.6 9.1 162 4-168 324-589 (876)
32 1h6t_A Internalin B; cell adhe 99.7 7.4E-17 2.5E-21 117.1 14.1 97 53-155 109-206 (291)
33 3o6n_A APL1; leucine-rich repe 99.7 5.6E-17 1.9E-21 121.9 13.9 106 57-167 227-333 (390)
34 3zyi_A Leucine-rich repeat-con 99.7 4.4E-17 1.5E-21 124.8 13.5 101 54-155 145-272 (452)
35 1h6u_A Internalin H; cell adhe 99.7 8E-17 2.7E-21 117.8 14.3 148 2-167 84-232 (308)
36 2xwt_C Thyrotropin receptor; s 99.7 3.4E-17 1.2E-21 115.5 11.5 155 4-168 32-221 (239)
37 2z62_A TOLL-like receptor 4, v 99.7 4.3E-17 1.5E-21 117.2 12.2 148 2-155 51-230 (276)
38 3oja_A Leucine-rich immune mol 99.7 2.4E-17 8.1E-22 127.5 11.3 111 53-168 117-230 (487)
39 3e6j_A Variable lymphocyte rec 99.7 9.7E-17 3.3E-21 112.7 13.2 140 7-155 23-165 (229)
40 3m19_A Variable lymphocyte rec 99.7 1.1E-16 3.8E-21 113.7 13.3 152 5-168 16-171 (251)
41 2v70_A SLIT-2, SLIT homolog 2 99.7 1.2E-16 4.1E-21 111.6 12.7 149 6-164 14-165 (220)
42 1wwl_A Monocyte differentiatio 99.7 2.6E-17 8.8E-22 120.5 9.6 161 2-168 94-269 (312)
43 4ecn_A Leucine-rich repeat pro 99.7 1.7E-17 5.9E-22 135.6 9.5 97 56-155 548-650 (876)
44 3oja_B Anopheles plasmodium-re 99.7 1.2E-16 4.1E-21 126.3 14.0 105 58-167 234-339 (597)
45 1xeu_A Internalin C; cellular 99.7 1.2E-16 4.1E-21 114.4 12.7 145 2-165 40-185 (263)
46 2z80_A TOLL-like receptor 2, v 99.7 2.2E-17 7.5E-22 122.7 9.1 146 3-155 52-204 (353)
47 3vq2_A TLR4, TOLL-like recepto 99.7 2.8E-17 9.5E-22 129.8 10.2 101 55-155 447-551 (606)
48 3vq2_A TLR4, TOLL-like recepto 99.7 7E-17 2.4E-21 127.5 12.3 159 2-168 375-537 (606)
49 2v9t_B SLIT homolog 2 protein 99.7 1.6E-16 5.5E-21 110.9 12.8 145 7-164 15-164 (220)
50 2id5_A Lingo-1, leucine rich r 99.7 7.1E-17 2.4E-21 124.2 11.9 148 3-155 32-182 (477)
51 2z80_A TOLL-like receptor 2, v 99.7 2.8E-17 9.5E-22 122.1 8.8 158 2-167 75-237 (353)
52 1h6t_A Internalin B; cell adhe 99.7 2.2E-16 7.6E-21 114.6 13.3 148 2-167 45-193 (291)
53 3o6n_A APL1; leucine-rich repe 99.7 2.4E-16 8.3E-21 118.4 13.7 86 2-88 68-175 (390)
54 2xwt_C Thyrotropin receptor; s 99.7 1.1E-16 3.8E-21 112.8 11.1 142 13-168 20-172 (239)
55 3v47_A TOLL-like receptor 5B a 99.7 3.6E-16 1.2E-20 119.5 14.7 107 57-167 276-386 (455)
56 2id5_A Lingo-1, leucine rich r 99.7 2.2E-16 7.5E-21 121.5 13.2 153 2-155 79-278 (477)
57 3oja_B Anopheles plasmodium-re 99.7 3.1E-16 1.1E-20 124.0 13.8 87 2-88 74-181 (597)
58 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 3.2E-16 1.1E-20 123.0 13.7 151 2-164 352-509 (562)
59 2xot_A Amphoterin-induced prot 99.7 1.9E-16 6.6E-21 118.1 11.6 138 5-149 41-187 (361)
60 4glp_A Monocyte differentiatio 99.7 6.5E-17 2.2E-21 118.2 8.3 152 3-164 145-306 (310)
61 2ell_A Acidic leucine-rich nuc 99.7 2.4E-16 8.3E-21 105.4 10.3 133 26-167 23-162 (168)
62 2xot_A Amphoterin-induced prot 99.7 4.2E-16 1.4E-20 116.2 12.5 152 6-168 21-179 (361)
63 4g8a_A TOLL-like receptor 4; l 99.7 2.2E-16 7.4E-21 124.7 11.5 140 4-151 53-199 (635)
64 2z81_A CD282 antigen, TOLL-lik 99.7 8.3E-17 2.8E-21 125.7 9.0 148 3-155 26-178 (549)
65 2ell_A Acidic leucine-rich nuc 99.7 2.6E-16 8.8E-21 105.3 10.2 133 2-144 23-165 (168)
66 4fmz_A Internalin; leucine ric 99.7 1.3E-15 4.4E-20 112.7 14.8 137 3-155 66-205 (347)
67 2z63_A TOLL-like receptor 4, v 99.7 1.9E-16 6.4E-21 124.0 10.9 103 53-155 418-524 (570)
68 1m9s_A Internalin B; cell inva 99.7 1E-15 3.5E-20 121.1 14.8 146 2-165 64-210 (605)
69 3e6j_A Variable lymphocyte rec 99.7 8.2E-16 2.8E-20 107.9 12.2 130 3-139 40-172 (229)
70 3t6q_A CD180 antigen; protein- 99.7 8.3E-16 2.8E-20 121.4 13.5 100 55-155 424-529 (606)
71 3v47_A TOLL-like receptor 5B a 99.7 3.1E-16 1E-20 119.9 10.4 109 53-164 296-407 (455)
72 1ziw_A TOLL-like receptor 3; i 99.7 1.3E-15 4.4E-20 121.8 14.4 162 2-167 404-599 (680)
73 4glp_A Monocyte differentiatio 99.7 1.8E-16 6.2E-21 115.9 8.7 150 3-155 91-257 (310)
74 1wwl_A Monocyte differentiatio 99.7 1.9E-16 6.5E-21 115.9 8.8 156 2-165 120-309 (312)
75 2z63_A TOLL-like receptor 4, v 99.7 8.3E-16 2.8E-20 120.4 12.9 147 3-155 28-183 (570)
76 4ezg_A Putative uncharacterize 99.7 6E-16 2.1E-20 106.1 10.6 132 24-167 41-174 (197)
77 2z7x_B TOLL-like receptor 1, v 99.7 7.8E-16 2.7E-20 119.5 12.0 135 24-168 321-460 (520)
78 2v9t_B SLIT homolog 2 protein 99.7 1.2E-15 4E-20 106.5 11.7 130 3-139 32-165 (220)
79 2o6s_A Variable lymphocyte rec 99.7 2.7E-15 9.1E-20 103.6 13.2 101 54-155 50-154 (208)
80 4fmz_A Internalin; leucine ric 99.7 2.1E-15 7.1E-20 111.5 13.3 148 2-155 176-339 (347)
81 1ziw_A TOLL-like receptor 3; i 99.7 1.3E-15 4.3E-20 121.8 13.0 147 3-155 25-177 (680)
82 2z81_A CD282 antigen, TOLL-lik 99.7 4.1E-16 1.4E-20 121.7 9.6 149 2-155 49-202 (549)
83 3oja_A Leucine-rich immune mol 99.7 8.4E-16 2.9E-20 118.9 11.3 159 3-168 34-207 (487)
84 3o53_A Protein LRIM1, AGAP0063 99.6 1.5E-16 5.1E-21 116.7 6.1 148 3-165 99-250 (317)
85 4g8a_A TOLL-like receptor 4; l 99.6 1.4E-15 4.7E-20 120.1 11.9 140 15-166 42-187 (635)
86 1m9s_A Internalin B; cell inva 99.6 2.5E-15 8.4E-20 118.9 12.7 148 2-167 42-190 (605)
87 2ft3_A Biglycan; proteoglycan, 99.6 2.1E-15 7.2E-20 111.1 11.5 145 3-155 54-223 (332)
88 3t6q_A CD180 antigen; protein- 99.6 3.4E-15 1.2E-19 117.8 13.3 147 3-155 33-185 (606)
89 2v70_A SLIT-2, SLIT homolog 2 99.6 3.7E-15 1.2E-19 104.0 11.9 130 3-139 32-166 (220)
90 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 1.9E-15 6.6E-20 118.5 11.5 135 24-168 350-489 (562)
91 2o6s_A Variable lymphocyte rec 99.6 5.3E-15 1.8E-19 102.1 12.3 130 3-139 28-161 (208)
92 1o6v_A Internalin A; bacterial 99.6 8.5E-15 2.9E-19 112.5 14.4 156 2-168 220-391 (466)
93 2wfh_A SLIT homolog 2 protein 99.6 5.3E-15 1.8E-19 101.2 11.8 123 7-139 14-139 (193)
94 2je0_A Acidic leucine-rich nuc 99.6 1.8E-15 6E-20 99.2 9.0 125 25-155 15-146 (149)
95 1xeu_A Internalin C; cellular 99.6 1.4E-15 4.9E-20 108.8 9.3 142 6-166 22-164 (263)
96 3bz5_A Internalin-J, INLJ; leu 99.6 9.1E-15 3.1E-19 112.3 13.8 143 2-155 41-197 (457)
97 3bz5_A Internalin-J, INLJ; leu 99.6 9.2E-15 3.2E-19 112.2 13.8 143 3-155 64-239 (457)
98 3j0a_A TOLL-like receptor 5; m 99.6 5.6E-15 1.9E-19 120.9 12.4 146 2-155 23-180 (844)
99 1w8a_A SLIT protein; signaling 99.6 8E-15 2.7E-19 100.2 10.9 127 6-139 11-139 (192)
100 4b8c_D Glucose-repressible alc 99.6 1E-15 3.6E-20 123.4 7.2 101 53-155 221-322 (727)
101 1a9n_A U2A', U2A'; complex (nu 99.6 2.8E-15 9.5E-20 101.0 8.0 124 23-155 15-146 (176)
102 1o6v_A Internalin A; bacterial 99.6 3.3E-14 1.1E-18 109.3 14.4 38 2-41 176-213 (466)
103 2je0_A Acidic leucine-rich nuc 99.6 3.5E-15 1.2E-19 97.8 7.8 124 3-135 17-149 (149)
104 2ast_B S-phase kinase-associat 99.6 1.7E-15 6E-20 111.4 6.8 154 2-155 92-278 (336)
105 1jl5_A Outer protein YOPM; leu 99.6 2.8E-14 9.6E-19 109.5 13.1 122 3-142 131-253 (454)
106 3cvr_A Invasion plasmid antige 99.6 2E-14 7E-19 112.9 12.5 144 3-164 80-242 (571)
107 3g06_A SSPH2 (leucine-rich rep 99.6 6.9E-14 2.3E-18 111.0 15.3 31 125-155 260-290 (622)
108 1dce_A Protein (RAB geranylger 99.6 1.6E-16 5.4E-21 124.9 0.1 105 57-168 442-549 (567)
109 1a9n_A U2A', U2A'; complex (nu 99.6 1.1E-14 3.8E-19 98.1 9.0 129 2-141 18-155 (176)
110 2ast_B S-phase kinase-associat 99.6 3.3E-15 1.1E-19 110.0 6.6 84 53-136 191-282 (336)
111 3cvr_A Invasion plasmid antige 99.6 3.3E-14 1.1E-18 111.7 12.7 126 4-155 60-186 (571)
112 1jl5_A Outer protein YOPM; leu 99.6 4.3E-15 1.5E-19 114.0 7.0 146 5-167 73-230 (454)
113 1w8a_A SLIT protein; signaling 99.6 2E-14 6.9E-19 98.2 9.6 122 30-164 11-138 (192)
114 1ds9_A Outer arm dynein; leuci 99.6 1.6E-16 5.5E-21 109.1 -1.0 146 5-160 25-185 (198)
115 3j0a_A TOLL-like receptor 5; m 99.6 2.9E-14 1E-18 116.7 11.7 149 2-155 47-210 (844)
116 2ca6_A RAN GTPase-activating p 99.6 3E-15 1E-19 112.4 5.4 154 2-155 93-309 (386)
117 4ay9_X Follicle-stimulating ho 99.5 4.6E-14 1.6E-18 104.8 10.8 139 3-143 30-219 (350)
118 4b8c_D Glucose-repressible alc 99.5 7.9E-15 2.7E-19 118.3 6.7 122 16-145 213-336 (727)
119 2o6r_A Variable lymphocyte rec 99.5 1.2E-13 4.2E-18 93.0 11.4 126 6-140 10-138 (177)
120 2ca6_A RAN GTPase-activating p 99.5 8E-15 2.7E-19 110.1 5.7 64 2-69 59-135 (386)
121 2wfh_A SLIT homolog 2 protein 99.5 1.1E-13 3.7E-18 94.7 10.8 122 30-164 13-138 (193)
122 3g06_A SSPH2 (leucine-rich rep 99.5 2.7E-13 9.1E-18 107.6 13.6 144 3-167 121-276 (622)
123 1dce_A Protein (RAB geranylger 99.5 1.1E-13 3.7E-18 108.8 11.1 118 28-155 442-566 (567)
124 3goz_A Leucine-rich repeat-con 99.5 5.2E-14 1.8E-18 104.9 6.6 37 4-41 23-65 (362)
125 2o6r_A Variable lymphocyte rec 99.5 7E-13 2.4E-17 89.2 11.3 123 29-165 9-137 (177)
126 3goz_A Leucine-rich repeat-con 99.4 2.7E-13 9.3E-18 101.0 8.5 157 4-167 52-240 (362)
127 4ay9_X Follicle-stimulating ho 99.4 1.4E-12 4.8E-17 96.8 11.5 90 14-111 19-113 (350)
128 2r9u_A Variable lymphocyte rec 99.4 2E-12 6.8E-17 87.0 9.2 104 29-143 14-122 (174)
129 1z7x_W Ribonuclease inhibitor; 99.4 1.2E-13 4.3E-18 105.5 3.2 81 4-88 200-294 (461)
130 2r9u_A Variable lymphocyte rec 99.4 2.5E-12 8.6E-17 86.5 8.4 105 6-120 15-122 (174)
131 1z7x_W Ribonuclease inhibitor; 99.4 1.6E-13 5.3E-18 105.0 2.5 147 3-155 227-404 (461)
132 3g39_A Variable lymphocyte rec 99.4 4E-12 1.4E-16 85.1 9.0 103 28-141 10-117 (170)
133 1ds9_A Outer arm dynein; leuci 99.4 6.8E-15 2.3E-19 100.9 -4.8 133 23-164 14-152 (198)
134 3g39_A Variable lymphocyte rec 99.3 6.5E-12 2.2E-16 84.1 9.3 103 5-117 11-116 (170)
135 3sb4_A Hypothetical leucine ri 99.3 5.7E-12 1.9E-16 92.7 9.8 148 2-155 100-327 (329)
136 3ogk_B Coronatine-insensitive 99.2 2.2E-11 7.4E-16 95.8 8.8 34 53-86 217-251 (592)
137 3un9_A NLR family member X1; l 99.2 3.2E-12 1.1E-16 95.7 1.6 148 3-155 72-245 (372)
138 2p1m_B Transport inhibitor res 99.1 2.2E-11 7.6E-16 95.7 4.5 65 2-67 129-195 (594)
139 2ifg_A High affinity nerve gro 99.1 1.4E-10 4.7E-15 85.8 7.9 100 31-139 12-116 (347)
140 3sb4_A Hypothetical leucine ri 99.1 4.5E-10 1.5E-14 82.5 9.0 74 78-155 225-303 (329)
141 3ogk_B Coronatine-insensitive 99.1 7.1E-11 2.4E-15 92.9 4.8 146 5-155 140-324 (592)
142 2ifg_A High affinity nerve gro 99.0 7.6E-10 2.6E-14 81.8 8.5 102 7-116 12-116 (347)
143 2p1m_B Transport inhibitor res 99.0 1E-10 3.4E-15 92.0 2.7 131 2-136 65-221 (594)
144 3un9_A NLR family member X1; l 99.0 1.1E-10 3.8E-15 87.3 1.7 133 3-140 101-253 (372)
145 2ra8_A Uncharacterized protein 98.8 1.6E-08 5.4E-13 75.4 8.4 145 2-155 138-313 (362)
146 4fdw_A Leucine rich hypothetic 98.7 1.6E-07 5.5E-12 70.9 11.2 76 75-155 267-351 (401)
147 2ra8_A Uncharacterized protein 98.6 4.9E-08 1.7E-12 72.8 5.4 131 1-139 170-320 (362)
148 4fdw_A Leucine rich hypothetic 98.6 5.6E-07 1.9E-11 68.0 11.0 144 5-155 159-329 (401)
149 1io0_A Tropomodulin; LRR prote 98.6 3.2E-08 1.1E-12 66.9 3.0 113 22-139 31-164 (185)
150 1io0_A Tropomodulin; LRR prote 98.4 1.1E-07 3.7E-12 64.3 3.4 107 2-112 35-161 (185)
151 3e4g_A ATP synthase subunit S, 98.3 9.4E-07 3.2E-11 59.1 4.9 80 57-136 62-149 (176)
152 3e4g_A ATP synthase subunit S, 98.2 2E-06 6.9E-11 57.5 4.5 96 18-118 52-155 (176)
153 3rw6_A Nuclear RNA export fact 98.0 3.7E-06 1.3E-10 60.0 3.9 78 53-132 167-257 (267)
154 3rw6_A Nuclear RNA export fact 98.0 1.3E-05 4.3E-10 57.2 5.6 82 76-159 167-261 (267)
155 4fs7_A Uncharacterized protein 97.7 0.00032 1.1E-08 52.5 9.2 135 4-155 231-372 (394)
156 4h09_A Hypothetical leucine ri 97.6 0.0012 4.2E-08 48.9 11.6 95 56-155 240-339 (379)
157 4gt6_A Cell surface protein; l 97.4 0.0016 5.5E-08 48.7 10.1 96 53-155 285-384 (394)
158 4h09_A Hypothetical leucine ri 97.3 0.0038 1.3E-07 46.3 11.0 91 53-148 260-355 (379)
159 4gt6_A Cell surface protein; l 97.2 0.0014 4.8E-08 49.0 8.1 79 53-137 308-389 (394)
160 4fs7_A Uncharacterized protein 97.2 0.0076 2.6E-07 45.0 11.6 96 53-155 250-349 (394)
161 1pgv_A TMD-1, tropomodulin TMD 96.9 0.00086 2.9E-08 45.6 3.5 111 24-138 38-169 (197)
162 3rfe_A Platelet glycoprotein I 96.6 0.0028 9.4E-08 40.0 4.4 50 31-89 12-66 (130)
163 1pgv_A TMD-1, tropomodulin TMD 96.4 0.0026 8.7E-08 43.2 3.3 102 53-155 38-163 (197)
164 3rfe_A Platelet glycoprotein I 96.1 0.016 5.3E-07 36.5 5.7 53 83-139 13-68 (130)
165 2lz0_A Uncharacterized protein 69.8 5.8 0.0002 23.3 3.5 44 67-111 7-52 (100)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.86 E-value=4.1e-21 Score=141.74 Aligned_cols=153 Identities=22% Similarity=0.308 Sum_probs=97.9
Q ss_pred CCCCcEEeeCCccccccCchhhcCCCCccEEEecCCCCCC-CCC-------------C----------CCccccc---cC
Q 038441 2 LKFPSTLNLFGLLKFRLFPEIMGRMEHLLVLRLLGTAIRG-LPI-------------C----------LKLEKFS---KS 54 (169)
Q Consensus 2 l~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~-------------~----------~~l~~~~---~~ 54 (169)
+++|++|++++|. ++.+|+.+..+++|++|++++|.+.+ ++. + +.++.+| ..
T Consensus 126 l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~ 204 (328)
T 4fcg_A 126 FAGLETLTLARNP-LRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIAN 204 (328)
T ss_dssp GTTCSEEEEESCC-CCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGG
T ss_pred cCCCCEEECCCCc-cccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcC
Confidence 4677888887754 55777777778888888887754332 211 0 1122333 44
Q ss_pred CCCccEEEeeCCcCcccccccccccceE-EEecccccCCccccccccCCccCEEecCCCCCCCCcchhhhcCCCCceEec
Q 038441 55 MKSLTMLILDGTTIRELPLSVELLTGLL-LNLKDWQYLESLPSTINGLKSFKILNLSSCSKLENVPENLGKVESLEELDI 133 (169)
Q Consensus 55 ~~~L~~L~l~~~~~~~lp~~~~~~~~L~-l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 133 (169)
+++|++|++++|.++.+|+.++.+++|+ +++++|+..+.+|..+..+++|++|++++|+..+.+|..+.++++|++|++
T Consensus 205 l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L 284 (328)
T 4fcg_A 205 LQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL 284 (328)
T ss_dssp CTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEEC
T ss_pred CCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeC
Confidence 5566666666666666666666666666 666666566666666666666777777666666666666666777777777
Q ss_pred cCCcce-ecChhhhcCCCcceEE
Q 038441 134 SRTAIR-QLPTSIFLLKNLKAVD 155 (169)
Q Consensus 134 ~~n~l~-~~~~~~~~l~~L~~L~ 155 (169)
++|++. .+|..+..+++++.++
T Consensus 285 ~~n~~~~~iP~~l~~L~~L~~l~ 307 (328)
T 4fcg_A 285 RGCVNLSRLPSLIAQLPANCIIL 307 (328)
T ss_dssp TTCTTCCCCCGGGGGSCTTCEEE
T ss_pred CCCCchhhccHHHhhccCceEEe
Confidence 776654 6666666677776666
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.85 E-value=3e-20 Score=137.11 Aligned_cols=152 Identities=28% Similarity=0.418 Sum_probs=125.8
Q ss_pred CCCCcEEeeCCccccccCchhhcCCCCccEEEecCCCCCCCCC---------------CCCccccc---c---------C
Q 038441 2 LKFPSTLNLFGLLKFRLFPEIMGRMEHLLVLRLLGTAIRGLPI---------------CLKLEKFS---K---------S 54 (169)
Q Consensus 2 l~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---------------~~~l~~~~---~---------~ 54 (169)
++.|++|++++|. ++.+|+.+..+++|++|++++|.++.++. |+.+..+| . .
T Consensus 103 l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~ 181 (328)
T 4fcg_A 103 LSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQG 181 (328)
T ss_dssp GTTCSEEEEESSC-CCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEE
T ss_pred CCCCCEEECCCCC-ccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhcc
Confidence 4678899998865 55888888889999999999998886551 23334444 1 2
Q ss_pred CCCccEEEeeCCcCcccccccccccceE-EEecccccCCccccccccCCccCEEecCCCCCCCCcchhhhcCCCCceEec
Q 038441 55 MKSLTMLILDGTTIRELPLSVELLTGLL-LNLKDWQYLESLPSTINGLKSFKILNLSSCSKLENVPENLGKVESLEELDI 133 (169)
Q Consensus 55 ~~~L~~L~l~~~~~~~lp~~~~~~~~L~-l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 133 (169)
+++|++|++++|.++.+|..++.+++|+ +++++| ....+|..+..+++|++|++++|+..+.+|..+.++++|++|++
T Consensus 182 l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N-~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L 260 (328)
T 4fcg_A 182 LVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNS-PLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLIL 260 (328)
T ss_dssp STTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESS-CCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEEC
T ss_pred CCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCC-CCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEEC
Confidence 7889999999999888888899999999 999988 45567777889999999999998888888988999999999999
Q ss_pred cCCcce-ecChhhhcCCCcceEE
Q 038441 134 SRTAIR-QLPTSIFLLKNLKAVD 155 (169)
Q Consensus 134 ~~n~l~-~~~~~~~~l~~L~~L~ 155 (169)
++|.+. .+|..+..+++|+.|+
T Consensus 261 ~~n~~~~~~p~~~~~l~~L~~L~ 283 (328)
T 4fcg_A 261 KDCSNLLTLPLDIHRLTQLEKLD 283 (328)
T ss_dssp TTCTTCCBCCTTGGGCTTCCEEE
T ss_pred CCCCchhhcchhhhcCCCCCEEe
Confidence 998766 7888889999999999
No 3
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.82 E-value=4.4e-19 Score=128.80 Aligned_cols=155 Identities=22% Similarity=0.272 Sum_probs=91.0
Q ss_pred CCCcEEeeCCccccccCchhhcCCCCccEEEecCCCCCCCCCCCCccccccCCCCccEEEeeCCcCcccccccccccceE
Q 038441 3 KFPSTLNLFGLLKFRLFPEIMGRMEHLLVLRLLGTAIRGLPICLKLEKFSKSMKSLTMLILDGTTIRELPLSVELLTGLL 82 (169)
Q Consensus 3 ~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~lp~~~~~~~~L~ 82 (169)
+.++.|++++|......+..+..+++|++|++++|.++.++. . ..+++|++|++++|.++.+|..+..+++|+
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~------~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~ 103 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV------D-GTLPVLGTLDLSHNQLQSLPLLGQTLPALT 103 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC------C-SCCTTCCEEECCSSCCSSCCCCTTTCTTCC
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC------C-CCCCcCCEEECCCCcCCcCchhhccCCCCC
Confidence 456777777765433334567778888888888865544211 0 455666666666666666666666666666
Q ss_pred -EEecccccCCccccccccCCccCEEecCCCCCCCCcch-hhhcCCCCceEeccCCcceecCh-hhhcCCCcceEEcccc
Q 038441 83 -LNLKDWQYLESLPSTINGLKSFKILNLSSCSKLENVPE-NLGKVESLEELDISRTAIRQLPT-SIFLLKNLKAVDHYHL 159 (169)
Q Consensus 83 -l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~~~~l 159 (169)
+++++|+.....+..+..+++|++|++++ +.+..+|. .+..+++|+.|++++|.++.+|. .+..+++|+.|+ +
T Consensus 104 ~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~---L 179 (290)
T 1p9a_G 104 VLDVSFNRLTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL---L 179 (290)
T ss_dssp EEECCSSCCCCCCSSTTTTCTTCCEEECTT-SCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEE---C
T ss_pred EEECCCCcCcccCHHHHcCCCCCCEEECCC-CCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEE---C
Confidence 66666533322234555666666666666 34444443 34556666666666666666655 335566666666 4
Q ss_pred cccccccCC
Q 038441 160 HHGICASLP 168 (169)
Q Consensus 160 ~~~~~~~l~ 168 (169)
+.+.++.+|
T Consensus 180 ~~N~l~~ip 188 (290)
T 1p9a_G 180 QENSLYTIP 188 (290)
T ss_dssp CSSCCCCCC
T ss_pred CCCcCCccC
Confidence 445555444
No 4
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.80 E-value=5.7e-19 Score=121.29 Aligned_cols=149 Identities=14% Similarity=0.151 Sum_probs=122.7
Q ss_pred CCCcEEeeCCccccccCchhhcCCCCccEEEecCCCCCCCCCCCCccccccCCCCccEEEeeCCcCcc-cccccccccce
Q 038441 3 KFPSTLNLFGLLKFRLFPEIMGRMEHLLVLRLLGTAIRGLPICLKLEKFSKSMKSLTMLILDGTTIRE-LPLSVELLTGL 81 (169)
Q Consensus 3 ~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~-lp~~~~~~~~L 81 (169)
+.+++|++++| .++.+| .+..+++|++|++++|.++.+ ..+ ..+++|++|++++|.++. .+..+..+++|
T Consensus 44 ~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~l~~n~~~~~------~~l-~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 114 (197)
T 4ezg_A 44 NSLTYITLANI-NVTDLT-GIEYAHNIKDLTINNIHATNY------NPI-SGLSNLERLRIMGKDVTSDKIPNLSGLTSL 114 (197)
T ss_dssp HTCCEEEEESS-CCSCCT-TGGGCTTCSEEEEESCCCSCC------GGG-TTCTTCCEEEEECTTCBGGGSCCCTTCTTC
T ss_pred CCccEEeccCC-CccChH-HHhcCCCCCEEEccCCCCCcc------hhh-hcCCCCCEEEeECCccCcccChhhcCCCCC
Confidence 57899999986 466777 688999999999999654431 112 678899999999999985 67789999999
Q ss_pred E-EEecccccCCccccccccCCccCEEecCCCCCCCCcchhhhcCCCCceEeccCCcceecChhhhcCCCcceEEccccc
Q 038441 82 L-LNLKDWQYLESLPSTINGLKSFKILNLSSCSKLENVPENLGKVESLEELDISRTAIRQLPTSIFLLKNLKAVDHYHLH 160 (169)
Q Consensus 82 ~-l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~~~~l~ 160 (169)
+ +++++|......+..+..+++|++|++++|..+..++ .+.++++|++|++++|.++.++ .+..+++|+.|+ +.
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~---l~ 189 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLY---AF 189 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEE---EC
T ss_pred CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEE---ee
Confidence 9 9999986666677788899999999999965577777 6899999999999999999887 788999999999 66
Q ss_pred ccccc
Q 038441 161 HGICA 165 (169)
Q Consensus 161 ~~~~~ 165 (169)
.+.|.
T Consensus 190 ~N~i~ 194 (197)
T 4ezg_A 190 SQTIG 194 (197)
T ss_dssp BC---
T ss_pred CcccC
Confidence 66554
No 5
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.79 E-value=3.4e-18 Score=122.79 Aligned_cols=149 Identities=28% Similarity=0.429 Sum_probs=74.0
Q ss_pred CCcEEeeCCccccccCch-hhcCCCCccEEEecCCCCCCCCC---------------CCCccccc----cCCCCccEEEe
Q 038441 4 FPSTLNLFGLLKFRLFPE-IMGRMEHLLVLRLLGTAIRGLPI---------------CLKLEKFS----KSMKSLTMLIL 63 (169)
Q Consensus 4 ~l~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~---------------~~~l~~~~----~~~~~L~~L~l 63 (169)
.+++|+++++. ++.+++ .+..+++|++|++++|.++.++. .+.++.++ ..+++|++|++
T Consensus 38 ~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 116 (270)
T 2o6q_A 38 DTKKLDLQSNK-LSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL 116 (270)
T ss_dssp TCSEEECCSSC-CSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred CCCEEECcCCC-CCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence 46777777654 444443 46667777777777765554321 01111222 23445555555
Q ss_pred eCCcCcccccc-cccccceE-EEecccccCCccc-cccccCCccCEEecCCCCCCCCcch-hhhcCCCCceEeccCCcce
Q 038441 64 DGTTIRELPLS-VELLTGLL-LNLKDWQYLESLP-STINGLKSFKILNLSSCSKLENVPE-NLGKVESLEELDISRTAIR 139 (169)
Q Consensus 64 ~~~~~~~lp~~-~~~~~~L~-l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~ 139 (169)
++|.++.+++. +..+++|+ +++++|. +..++ ..+..+++|++|++++ +.+..++. .+.++++|++|++++|.++
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (270)
T 2o6q_A 117 DRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYN-NQLKRVPEGAFDKLTELKTLKLDNNQLK 194 (270)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCccCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEecC-CcCcEeChhHhccCCCcCEEECCCCcCC
Confidence 55555544332 44455555 5555542 22232 2344555555555554 23333332 3455555555555555555
Q ss_pred ecCh-hhhcCCCcceEE
Q 038441 140 QLPT-SIFLLKNLKAVD 155 (169)
Q Consensus 140 ~~~~-~~~~l~~L~~L~ 155 (169)
.+|. .+..+++|+.|+
T Consensus 195 ~~~~~~~~~l~~L~~L~ 211 (270)
T 2o6q_A 195 RVPEGAFDSLEKLKMLQ 211 (270)
T ss_dssp CCCTTTTTTCTTCCEEE
T ss_pred cCCHHHhccccCCCEEE
Confidence 5444 344455555555
No 6
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.79 E-value=4.2e-18 Score=121.06 Aligned_cols=153 Identities=25% Similarity=0.335 Sum_probs=117.7
Q ss_pred CCCcEEeeCCccccccCchhhcCCCCccEEEecCCCCCCCCCCCCccccccCCCCccEEEeeCCcCcccccc-cccccce
Q 038441 3 KFPSTLNLFGLLKFRLFPEIMGRMEHLLVLRLLGTAIRGLPICLKLEKFSKSMKSLTMLILDGTTIRELPLS-VELLTGL 81 (169)
Q Consensus 3 ~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~lp~~-~~~~~~L 81 (169)
..+++|+++++......+..+..+++|++|++++|.+++++. ..+ ..+++|++|++++|.++.+++. +..+++|
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 109 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA----GVF-DDLTELGTLGLANNQLASLPLGVFDHLTQL 109 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT----TTT-TTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH----hHh-ccCCcCCEEECCCCcccccChhHhcccCCC
Confidence 457889998876444445568889999999999977765211 011 5678899999999999987654 6788999
Q ss_pred E-EEecccccCCcccc-ccccCCccCEEecCCCCCCCCcch-hhhcCCCCceEeccCCcceecCh-hhhcCCCcceEEcc
Q 038441 82 L-LNLKDWQYLESLPS-TINGLKSFKILNLSSCSKLENVPE-NLGKVESLEELDISRTAIRQLPT-SIFLLKNLKAVDHY 157 (169)
Q Consensus 82 ~-l~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~~~ 157 (169)
+ +++++|. +..++. .+..+++|++|++++ +.+..++. .+.++++|++|++++|.++.++. .+..+++|+.|+
T Consensus 110 ~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~-- 185 (251)
T 3m19_A 110 DKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNT-NQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTIT-- 185 (251)
T ss_dssp CEEECCSSC-CCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE--
T ss_pred CEEEcCCCc-CCCcChhHhccCCcccEEECcC-CcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEE--
Confidence 9 9999984 445544 567899999999998 46666665 68889999999999999997766 678889999999
Q ss_pred cccccccc
Q 038441 158 HLHHGICA 165 (169)
Q Consensus 158 ~l~~~~~~ 165 (169)
+.+|.|.
T Consensus 186 -l~~N~~~ 192 (251)
T 3m19_A 186 -LFGNQFD 192 (251)
T ss_dssp -CCSCCBC
T ss_pred -eeCCcee
Confidence 5555553
No 7
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.78 E-value=4.4e-18 Score=137.97 Aligned_cols=77 Identities=22% Similarity=0.417 Sum_probs=47.9
Q ss_pred cceE-EEecccccCCccccccccCCccCEEecCCCCCCCCcchhhhcCCCCceEeccCCcce-ecChhhhcCCCcceEE
Q 038441 79 TGLL-LNLKDWQYLESLPSTINGLKSFKILNLSSCSKLENVPENLGKVESLEELDISRTAIR-QLPTSIFLLKNLKAVD 155 (169)
Q Consensus 79 ~~L~-l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~l~~L~~L~ 155 (169)
++++ +++++|+..+.+|..++.+++|+.|++++|...+.+|..++++++|+.|++++|+++ .+|..+..++.|++|+
T Consensus 632 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 710 (768)
T 3rgz_A 632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID 710 (768)
T ss_dssp BCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEE
T ss_pred ccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEE
Confidence 3455 555555555555666666666666666664444566666666666666666666666 5666666666666666
No 8
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.78 E-value=3.7e-18 Score=138.37 Aligned_cols=153 Identities=20% Similarity=0.230 Sum_probs=128.0
Q ss_pred CCCCcEEeeCCccccccCchhhcCCCCccEEEecCCCCCCCCCCCCccccc---cCCCCccEEEeeCCcCc-cccccccc
Q 038441 2 LKFPSTLNLFGLLKFRLFPEIMGRMEHLLVLRLLGTAIRGLPICLKLEKFS---KSMKSLTMLILDGTTIR-ELPLSVEL 77 (169)
Q Consensus 2 l~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~---~~~~~L~~L~l~~~~~~-~lp~~~~~ 77 (169)
++.|++|++++|.....+|..+..+++|++|++++|.+++ ..| ..+++|++|++++|.++ .+|..++.
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--------~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~ 464 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG--------TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY 464 (768)
T ss_dssp TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEES--------CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG
T ss_pred cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccC--------cccHHHhcCCCCCEEECCCCcccCcCCHHHcC
Confidence 4568888888877666778888888888888888876654 222 66788999999999888 67888999
Q ss_pred ccceE-EEecccccCCccccccccCCccCEEecCCCCCCCCcchhhhcCCCCceEeccCCcce-ecChhhhcCCCcceEE
Q 038441 78 LTGLL-LNLKDWQYLESLPSTINGLKSFKILNLSSCSKLENVPENLGKVESLEELDISRTAIR-QLPTSIFLLKNLKAVD 155 (169)
Q Consensus 78 ~~~L~-l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~l~~L~~L~ 155 (169)
+++|+ +++++|+..+..|..+..+++|++|++++|...+.+|.+++.+++|++|++++|.++ .+|..+..+++|+.|+
T Consensus 465 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 544 (768)
T 3rgz_A 465 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLD 544 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEE
T ss_pred CCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEE
Confidence 99999 999998777788888999999999999997666788999999999999999999998 7888999999999999
Q ss_pred cccccccccc
Q 038441 156 HYHLHHGICA 165 (169)
Q Consensus 156 ~~~l~~~~~~ 165 (169)
++.+.+.
T Consensus 545 ---Ls~N~l~ 551 (768)
T 3rgz_A 545 ---LNTNLFN 551 (768)
T ss_dssp ---CCSSEEE
T ss_pred ---CCCCccC
Confidence 5555543
No 9
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.78 E-value=7.8e-19 Score=128.70 Aligned_cols=59 Identities=22% Similarity=0.284 Sum_probs=31.6
Q ss_pred cccccCCccCEEecCCCCCCCCcchhhhcCCCCceEeccCCcce-ecChhhhcCCCcceEE
Q 038441 96 STINGLKSFKILNLSSCSKLENVPENLGKVESLEELDISRTAIR-QLPTSIFLLKNLKAVD 155 (169)
Q Consensus 96 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~l~~L~~L~ 155 (169)
..+..+++|++|++++| .+...+..+..+++|++|++++|.++ .+|..+..+++|+.|+
T Consensus 215 ~~~~~l~~L~~L~L~~N-~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 274 (313)
T 1ogq_A 215 VLFGSDKNTQKIHLAKN-SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLN 274 (313)
T ss_dssp GGCCTTSCCSEEECCSS-EECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEE
T ss_pred HHHhcCCCCCEEECCCC-ceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEE
Confidence 33444445555555442 22222223455566666666666666 5566666666666666
No 10
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.78 E-value=2.2e-18 Score=126.27 Aligned_cols=145 Identities=17% Similarity=0.260 Sum_probs=79.6
Q ss_pred CCCCcEEeeCCccccccCchhhcCCCCccEEEecCCCCCCCCCCCCccccc---cCCCCccEEEeeCCcCc-cccccccc
Q 038441 2 LKFPSTLNLFGLLKFRLFPEIMGRMEHLLVLRLLGTAIRGLPICLKLEKFS---KSMKSLTMLILDGTTIR-ELPLSVEL 77 (169)
Q Consensus 2 l~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~---~~~~~L~~L~l~~~~~~-~lp~~~~~ 77 (169)
++.|++|++++|.....+|+.+..+++|++|++++|.+++ .+| ..+++|++|++++|.++ .+|..++.
T Consensus 100 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--------~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~ 171 (313)
T 1ogq_A 100 LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSG--------TLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171 (313)
T ss_dssp CTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEES--------CCCGGGGGCTTCCEEECCSSCCEEECCGGGGC
T ss_pred CCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCC--------cCChHHhcCCCCCeEECcCCcccCcCCHHHhh
Confidence 4566667776655444566666666666667666655443 112 34555666666666555 45555555
Q ss_pred cc-ceE-EEecccccCCccccccccCCccCEEecCCCCCCCCcchhhhcCCCCceEeccCCcceecChhhhcCCCcceEE
Q 038441 78 LT-GLL-LNLKDWQYLESLPSTINGLKSFKILNLSSCSKLENVPENLGKVESLEELDISRTAIRQLPTSIFLLKNLKAVD 155 (169)
Q Consensus 78 ~~-~L~-l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~ 155 (169)
++ +|+ +++++|...+..|..+..+. |++|++++|......|..+..+++|+.|++++|.++..+..+..+++|++|+
T Consensus 172 l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~ 250 (313)
T 1ogq_A 172 FSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLD 250 (313)
T ss_dssp CCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEE
T ss_pred hhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEE
Confidence 54 555 66655544444455555544 5666655533333444455555556666666665553333344555555555
No 11
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.78 E-value=4.3e-18 Score=123.00 Aligned_cols=153 Identities=22% Similarity=0.267 Sum_probs=82.1
Q ss_pred CCCCcEEeeCCccccccCchhhcCCCCccEEEecCCC-CCCCCC---------------CCCccccc----cCCCCccEE
Q 038441 2 LKFPSTLNLFGLLKFRLFPEIMGRMEHLLVLRLLGTA-IRGLPI---------------CLKLEKFS----KSMKSLTML 61 (169)
Q Consensus 2 l~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~---------------~~~l~~~~----~~~~~L~~L 61 (169)
++.|++|++++|......+..+..+++|++|++++|. ++.++. .+.++.++ ..+++|++|
T Consensus 55 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 134 (285)
T 1ozn_A 55 CRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL 134 (285)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEE
Confidence 4566777777654333335556667777777777764 443210 01111121 344556666
Q ss_pred EeeCCcCcccccc-cccccceE-EEecccccCCccc-cccccCCccCEEecCCCCCCCCcchhhhcCCCCceEeccCCcc
Q 038441 62 ILDGTTIRELPLS-VELLTGLL-LNLKDWQYLESLP-STINGLKSFKILNLSSCSKLENVPENLGKVESLEELDISRTAI 138 (169)
Q Consensus 62 ~l~~~~~~~lp~~-~~~~~~L~-l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l 138 (169)
++++|.++.+++. +..+++|+ +++++|. +..++ ..+..+++|++|++++|......|..+.++++|+.|++++|.+
T Consensus 135 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 213 (285)
T 1ozn_A 135 YLQDNALQALPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 213 (285)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCcccccCHhHhccCCCccEEECCCCc-ccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcC
Confidence 6666666655443 55556666 6666553 33333 2355566666666665332223355566666666666666666
Q ss_pred eecCh-hhhcCCCcceEE
Q 038441 139 RQLPT-SIFLLKNLKAVD 155 (169)
Q Consensus 139 ~~~~~-~~~~l~~L~~L~ 155 (169)
+.++. .+..+++|+.|+
T Consensus 214 ~~~~~~~~~~l~~L~~L~ 231 (285)
T 1ozn_A 214 SALPTEALAPLRALQYLR 231 (285)
T ss_dssp SCCCHHHHTTCTTCCEEE
T ss_pred CcCCHHHcccCcccCEEe
Confidence 65554 355666666666
No 12
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.77 E-value=7.1e-18 Score=121.83 Aligned_cols=160 Identities=21% Similarity=0.266 Sum_probs=96.1
Q ss_pred CCCcEEeeCCccccccCc-hhhcCCCCccEEEecCCCCCCCCC----------------CCCccccc----cCCCCccEE
Q 038441 3 KFPSTLNLFGLLKFRLFP-EIMGRMEHLLVLRLLGTAIRGLPI----------------CLKLEKFS----KSMKSLTML 61 (169)
Q Consensus 3 ~~l~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~----------------~~~l~~~~----~~~~~L~~L 61 (169)
+.+++|+++++. ++.++ ..+..+++|++|++++|.++++.. +..++.++ ..+++|++|
T Consensus 32 ~~l~~L~l~~n~-i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 32 AASQRIFLHGNR-ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp TTCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCceEEEeeCCc-CCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 578999999965 55555 568899999999999987765310 11133332 344566666
Q ss_pred EeeCCcCccc-ccccccccceE-EEecccccCCccccccccCCccCEEecCCCCCCCCcch-hhhcCCCCceEeccCCcc
Q 038441 62 ILDGTTIREL-PLSVELLTGLL-LNLKDWQYLESLPSTINGLKSFKILNLSSCSKLENVPE-NLGKVESLEELDISRTAI 138 (169)
Q Consensus 62 ~l~~~~~~~l-p~~~~~~~~L~-l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~n~l 138 (169)
++++|.++.+ |..+..+++|+ +++++|......+..+..+++|++|++++ +.+..++. .+.++++|++|++++|.+
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l 189 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG-NRISSVPERAFRGLHSLDRLLLHQNRV 189 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCC-CcccccCHHHhcCccccCEEECCCCcc
Confidence 6666666654 33355566666 66666533322223455666666666665 34444443 356666677777777666
Q ss_pred eec-ChhhhcCCCcceEEcccccccccccC
Q 038441 139 RQL-PTSIFLLKNLKAVDHYHLHHGICASL 167 (169)
Q Consensus 139 ~~~-~~~~~~l~~L~~L~~~~l~~~~~~~l 167 (169)
+.+ |..+..+++|+.|+ ++.+.+..+
T Consensus 190 ~~~~~~~~~~l~~L~~L~---l~~n~l~~~ 216 (285)
T 1ozn_A 190 AHVHPHAFRDLGRLMTLY---LFANNLSAL 216 (285)
T ss_dssp CEECTTTTTTCTTCCEEE---CCSSCCSCC
T ss_pred cccCHhHccCcccccEee---CCCCcCCcC
Confidence 644 45666666777776 444444433
No 13
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.77 E-value=1e-17 Score=120.29 Aligned_cols=136 Identities=25% Similarity=0.346 Sum_probs=100.7
Q ss_pred CCCCcEEeeCCccccccCchh-hcCCCCccEEEecCCCCCCCCC---------------CCCccccc----cCCCCccEE
Q 038441 2 LKFPSTLNLFGLLKFRLFPEI-MGRMEHLLVLRLLGTAIRGLPI---------------CLKLEKFS----KSMKSLTML 61 (169)
Q Consensus 2 l~~l~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~---------------~~~l~~~~----~~~~~L~~L 61 (169)
++.|++|++++|. ++.+++. +..+++|++|++++|.++.++. .+.++.++ ..+++|++|
T Consensus 60 l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 138 (270)
T 2o6q_A 60 LTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYL 138 (270)
T ss_dssp CTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCc-cCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEE
Confidence 4567777777754 4455543 4567777777777777665431 12233333 567899999
Q ss_pred EeeCCcCcccccc-cccccceE-EEecccccCCccccccccCCccCEEecCCCCCCCCcch-hhhcCCCCceEeccCCcc
Q 038441 62 ILDGTTIRELPLS-VELLTGLL-LNLKDWQYLESLPSTINGLKSFKILNLSSCSKLENVPE-NLGKVESLEELDISRTAI 138 (169)
Q Consensus 62 ~l~~~~~~~lp~~-~~~~~~L~-l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~n~l 138 (169)
++++|.++.+|+. +..+++|+ +++++|......+..+..+++|++|++++ +.+..+|. .+..+++|+.+++++|.+
T Consensus 139 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 139 SLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDN-NQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCC-CcCCcCCHHHhccccCCCEEEecCCCe
Confidence 9999999988776 78899999 99999854443344678899999999998 46666665 578899999999999987
Q ss_pred e
Q 038441 139 R 139 (169)
Q Consensus 139 ~ 139 (169)
.
T Consensus 218 ~ 218 (270)
T 2o6q_A 218 D 218 (270)
T ss_dssp C
T ss_pred e
Confidence 6
No 14
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.76 E-value=2.2e-17 Score=118.70 Aligned_cols=145 Identities=24% Similarity=0.334 Sum_probs=85.9
Q ss_pred CCCcEEeeCCccccccCchhhcCCCCccEEEecCCCCCCCCCCCCccccccCCCCccEEEeeCCcCcccccc-cccccce
Q 038441 3 KFPSTLNLFGLLKFRLFPEIMGRMEHLLVLRLLGTAIRGLPICLKLEKFSKSMKSLTMLILDGTTIRELPLS-VELLTGL 81 (169)
Q Consensus 3 ~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~lp~~-~~~~~~L 81 (169)
++|++|++++|. +..++ .+..+++|++|++++|.+++++. ..+ ..+++|++|++++|.++.+++. +..+++|
T Consensus 63 ~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~L~~n~l~~~~~----~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 135 (272)
T 3rfs_A 63 PNVRYLALGGNK-LHDIS-ALKELTNLTYLILTGNQLQSLPN----GVF-DKLTNLKELVLVENQLQSLPDGVFDKLTNL 135 (272)
T ss_dssp TTCCEEECTTSC-CCCCG-GGTTCTTCCEEECTTSCCCCCCT----TTT-TTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred CCCcEEECCCCC-CCCch-hhcCCCCCCEEECCCCccCccCh----hHh-cCCcCCCEEECCCCcCCccCHHHhccCCCC
Confidence 445555555543 33332 34455555555555544433110 000 4456777777777777766554 5667777
Q ss_pred E-EEecccccCCccccccccCCccCEEecCCCCCCCCcch-hhhcCCCCceEeccCCcceecCh-hhhcCCCcceEE
Q 038441 82 L-LNLKDWQYLESLPSTINGLKSFKILNLSSCSKLENVPE-NLGKVESLEELDISRTAIRQLPT-SIFLLKNLKAVD 155 (169)
Q Consensus 82 ~-l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~ 155 (169)
+ +++++|......+..+..+++|++|++++| .+..++. .+.++++|++|++++|.++.++. .+..+++|+.|+
T Consensus 136 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 211 (272)
T 3rfs_A 136 TYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIW 211 (272)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred CEEECCCCccCccCHHHhccCccCCEEECCCC-CcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEE
Confidence 7 777776433333334567777777777774 4444443 45677777888887777776654 456777777777
No 15
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.76 E-value=2e-17 Score=118.91 Aligned_cols=154 Identities=25% Similarity=0.354 Sum_probs=121.8
Q ss_pred CCCCcEEeeCCccccccCchhhcCCCCccEEEecCCCCCCCCCCCCccccccCCCCccEEEeeCCcCcccccc-cccccc
Q 038441 2 LKFPSTLNLFGLLKFRLFPEIMGRMEHLLVLRLLGTAIRGLPICLKLEKFSKSMKSLTMLILDGTTIRELPLS-VELLTG 80 (169)
Q Consensus 2 l~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~lp~~-~~~~~~ 80 (169)
++.++.|++.++. ++.++. +..+++|++|++++|.++++ ..+ ..+++|++|++++|.++.+++. +..+++
T Consensus 40 l~~L~~L~l~~~~-i~~~~~-l~~l~~L~~L~l~~n~l~~~------~~l-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 110 (272)
T 3rfs_A 40 LNSIDQIIANNSD-IKSVQG-IQYLPNVRYLALGGNKLHDI------SAL-KELTNLTYLILTGNQLQSLPNGVFDKLTN 110 (272)
T ss_dssp HTTCCEEECTTSC-CCCCTT-GGGCTTCCEEECTTSCCCCC------GGG-TTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred ccceeeeeeCCCC-cccccc-cccCCCCcEEECCCCCCCCc------hhh-cCCCCCCEEECCCCccCccChhHhcCCcC
Confidence 3678999999864 666654 77899999999999776652 122 6788999999999999988765 788999
Q ss_pred eE-EEecccccCCccccccccCCccCEEecCCCCCCCCcch-hhhcCCCCceEeccCCcceecCh-hhhcCCCcceEEcc
Q 038441 81 LL-LNLKDWQYLESLPSTINGLKSFKILNLSSCSKLENVPE-NLGKVESLEELDISRTAIRQLPT-SIFLLKNLKAVDHY 157 (169)
Q Consensus 81 L~-l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~~~ 157 (169)
|+ +++++|......+..+..+++|++|++++| .+..++. .+.++++|++|++++|.++.++. .+..+++|++|+
T Consensus 111 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~-- 187 (272)
T 3rfs_A 111 LKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLR-- 187 (272)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE--
T ss_pred CCEEECCCCcCCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEE--
Confidence 99 999998555444456788999999999985 5556654 56899999999999999998776 468899999999
Q ss_pred cccccccccCC
Q 038441 158 HLHHGICASLP 168 (169)
Q Consensus 158 ~l~~~~~~~l~ 168 (169)
+..+.+..++
T Consensus 188 -L~~N~l~~~~ 197 (272)
T 3rfs_A 188 -LYQNQLKSVP 197 (272)
T ss_dssp -CCSSCCSCCC
T ss_pred -CCCCcCCccC
Confidence 5555554443
No 16
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.76 E-value=8.8e-18 Score=128.66 Aligned_cols=100 Identities=24% Similarity=0.348 Sum_probs=49.1
Q ss_pred CCCccEEEeeCCcCcccccccccccceE-EEecccccCCccccccccCCccCEEecCCCCCCCCcchhhhcCCCCceEec
Q 038441 55 MKSLTMLILDGTTIRELPLSVELLTGLL-LNLKDWQYLESLPSTINGLKSFKILNLSSCSKLENVPENLGKVESLEELDI 133 (169)
Q Consensus 55 ~~~L~~L~l~~~~~~~lp~~~~~~~~L~-l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 133 (169)
+++|++|++++|.++.+| .+..+++|+ +++++|......+..+..+++|++|++++|......+..+.++++|+.|++
T Consensus 195 l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 273 (452)
T 3zyi_A 195 LFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNL 273 (452)
T ss_dssp CTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCCCEEECCCCcccccc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEEC
Confidence 444555555555444443 244445555 555554333333444555555555555553222222344555555555666
Q ss_pred cCCcceecCh-hhhcCCCcceEE
Q 038441 134 SRTAIRQLPT-SIFLLKNLKAVD 155 (169)
Q Consensus 134 ~~n~l~~~~~-~~~~l~~L~~L~ 155 (169)
++|+++.+|. .+..+++|+.|+
T Consensus 274 ~~N~l~~~~~~~~~~l~~L~~L~ 296 (452)
T 3zyi_A 274 AHNNLSSLPHDLFTPLRYLVELH 296 (452)
T ss_dssp CSSCCSCCCTTSSTTCTTCCEEE
T ss_pred CCCcCCccChHHhccccCCCEEE
Confidence 5555555443 334555555555
No 17
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.76 E-value=9.7e-18 Score=128.03 Aligned_cols=99 Identities=21% Similarity=0.303 Sum_probs=41.8
Q ss_pred CCccEEEeeCCcCcccccccccccceE-EEecccccCCccccccccCCccCEEecCCCCCCCCcchhhhcCCCCceEecc
Q 038441 56 KSLTMLILDGTTIRELPLSVELLTGLL-LNLKDWQYLESLPSTINGLKSFKILNLSSCSKLENVPENLGKVESLEELDIS 134 (169)
Q Consensus 56 ~~L~~L~l~~~~~~~lp~~~~~~~~L~-l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 134 (169)
++|++|++++|.++.+| .+..+++|+ +++++|......+..+..+++|++|++++|......+..+.++++|+.|+++
T Consensus 185 ~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 263 (440)
T 3zyj_A 185 SNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLA 263 (440)
T ss_dssp SSCCEEECTTSCCSSCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECT
T ss_pred cccCeecCCCCcCcccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECC
Confidence 33444444444444333 233344444 4444442222223344444444444444422222222334445555555555
Q ss_pred CCcceecCh-hhhcCCCcceEE
Q 038441 135 RTAIRQLPT-SIFLLKNLKAVD 155 (169)
Q Consensus 135 ~n~l~~~~~-~~~~l~~L~~L~ 155 (169)
+|+++.+|. .+..+++|+.|+
T Consensus 264 ~N~l~~~~~~~~~~l~~L~~L~ 285 (440)
T 3zyj_A 264 HNNLTLLPHDLFTPLHHLERIH 285 (440)
T ss_dssp TSCCCCCCTTTTSSCTTCCEEE
T ss_pred CCCCCccChhHhccccCCCEEE
Confidence 555554443 234445555555
No 18
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.75 E-value=2.2e-17 Score=119.83 Aligned_cols=151 Identities=23% Similarity=0.280 Sum_probs=121.2
Q ss_pred CCCCcEEeeCCccccccCchhhcCCCCccEEEecCCCCCCCCCCCCccccccCCCCccEEEeeCCcCccccc-ccccccc
Q 038441 2 LKFPSTLNLFGLLKFRLFPEIMGRMEHLLVLRLLGTAIRGLPICLKLEKFSKSMKSLTMLILDGTTIRELPL-SVELLTG 80 (169)
Q Consensus 2 l~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~lp~-~~~~~~~ 80 (169)
+..|++|++++|. ++.++.. ..+++|++|++++|.++.++ .....+++|++|++++|.++.+|+ .+..+++
T Consensus 54 l~~L~~L~L~~n~-l~~~~~~-~~l~~L~~L~Ls~N~l~~l~------~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~ 125 (290)
T 1p9a_G 54 YTRLTQLNLDRAE-LTKLQVD-GTLPVLGTLDLSHNQLQSLP------LLGQTLPALTVLDVSFNRLTSLPLGALRGLGE 125 (290)
T ss_dssp CTTCCEEECTTSC-CCEEECC-SCCTTCCEEECCSSCCSSCC------CCTTTCTTCCEEECCSSCCCCCCSSTTTTCTT
T ss_pred CCCCCEEECCCCc-cCcccCC-CCCCcCCEEECCCCcCCcCc------hhhccCCCCCEEECCCCcCcccCHHHHcCCCC
Confidence 5789999999964 6666654 68999999999997665432 111678899999999999998875 4888999
Q ss_pred eE-EEecccccCCccccccccCCccCEEecCCCCCCCCcchh-hhcCCCCceEeccCCcceecChhhhcCCCcceEEccc
Q 038441 81 LL-LNLKDWQYLESLPSTINGLKSFKILNLSSCSKLENVPEN-LGKVESLEELDISRTAIRQLPTSIFLLKNLKAVDHYH 158 (169)
Q Consensus 81 L~-l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~~~~ 158 (169)
|+ +++++|......+..+..+++|++|++++ +.+..+|.. +.++++|++|++++|.++.+|..+.....|+.++
T Consensus 126 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~--- 201 (290)
T 1p9a_G 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLAN-NNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAF--- 201 (290)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECTT-SCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEE---
T ss_pred CCEEECCCCCCCccChhhcccccCCCEEECCC-CcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEE---
Confidence 99 99999854443344567899999999998 567777764 5789999999999999999999888888999999
Q ss_pred cccccc
Q 038441 159 LHHGIC 164 (169)
Q Consensus 159 l~~~~~ 164 (169)
+.+|.|
T Consensus 202 L~~Np~ 207 (290)
T 1p9a_G 202 LHGNPW 207 (290)
T ss_dssp CCSCCB
T ss_pred eCCCCc
Confidence 544544
No 19
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.75 E-value=1.8e-17 Score=122.02 Aligned_cols=126 Identities=20% Similarity=0.334 Sum_probs=61.3
Q ss_pred hcCCCCccEEEecCCCCCCCCCCCCccccc-cCCCCccEEEeeCCcCcccccccccccceE-EEecccccCCcccccccc
Q 038441 23 MGRMEHLLVLRLLGTAIRGLPICLKLEKFS-KSMKSLTMLILDGTTIRELPLSVELLTGLL-LNLKDWQYLESLPSTING 100 (169)
Q Consensus 23 ~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~-~~~~~L~~L~l~~~~~~~lp~~~~~~~~L~-l~l~~~~~~~~~~~~~~~ 100 (169)
+..+++|++|++++|.++.. .+.... ..+++|++|++++|.++.+|..+. ++|+ +++++|......+..+..
T Consensus 141 ~~~l~~L~~L~l~~n~l~~~----~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~ 214 (330)
T 1xku_A 141 FNGLNQMIVVELGTNPLKSS----GIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKG 214 (330)
T ss_dssp HTTCTTCCEEECCSSCCCGG----GBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTT
T ss_pred hcCCccccEEECCCCcCCcc----CcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcCCccCHHHhcC
Confidence 45555555555555444320 000000 334555555555555555544332 4455 555555333333344555
Q ss_pred CCccCEEecCCCCCCCCcc-hhhhcCCCCceEeccCCcceecChhhhcCCCcceEE
Q 038441 101 LKSFKILNLSSCSKLENVP-ENLGKVESLEELDISRTAIRQLPTSIFLLKNLKAVD 155 (169)
Q Consensus 101 ~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~ 155 (169)
+++|++|++++| .+..++ ..+..+++|++|++++|.++.+|..+..+++|++|+
T Consensus 215 l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~ 269 (330)
T 1xku_A 215 LNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVY 269 (330)
T ss_dssp CTTCCEEECCSS-CCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEE
T ss_pred CCCCCEEECCCC-cCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEE
Confidence 555555555552 333332 245555555555555555555555555555555555
No 20
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.75 E-value=3e-17 Score=121.02 Aligned_cols=162 Identities=16% Similarity=0.227 Sum_probs=85.7
Q ss_pred CCCCcEEeeCCccccccCchhhcCCCCccEEEecCCCCCCCCC------------CCCccccc----cCCCCccEEEeeC
Q 038441 2 LKFPSTLNLFGLLKFRLFPEIMGRMEHLLVLRLLGTAIRGLPI------------CLKLEKFS----KSMKSLTMLILDG 65 (169)
Q Consensus 2 l~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------------~~~l~~~~----~~~~~L~~L~l~~ 65 (169)
+++|++|++++|......|..+..+++|++|++++|.++.++. .+.++.++ ..+++|+.|++++
T Consensus 77 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~ 156 (332)
T 2ft3_A 77 LQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGG 156 (332)
T ss_dssp CTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCS
T ss_pred CCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCC
Confidence 4556666666654333335556666677777776665554321 11122222 2334444444444
Q ss_pred CcCcc--c-ccccccc--------------------cceE-EEecccccCCccccccccCCccCEEecCCCCCCCCc-ch
Q 038441 66 TTIRE--L-PLSVELL--------------------TGLL-LNLKDWQYLESLPSTINGLKSFKILNLSSCSKLENV-PE 120 (169)
Q Consensus 66 ~~~~~--l-p~~~~~~--------------------~~L~-l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~ 120 (169)
|.++. . +..+..+ ++|+ +++++|......+..+..+++|++|++++| .+..+ +.
T Consensus 157 n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N-~l~~~~~~ 235 (332)
T 2ft3_A 157 NPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHN-QIRMIENG 235 (332)
T ss_dssp CCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSS-CCCCCCTT
T ss_pred CccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC-cCCcCChh
Confidence 44321 1 1111111 2333 344443222222344556667777777763 33333 34
Q ss_pred hhhcCCCCceEeccCCcceecChhhhcCCCcceEEcccccccccccC
Q 038441 121 NLGKVESLEELDISRTAIRQLPTSIFLLKNLKAVDHYHLHHGICASL 167 (169)
Q Consensus 121 ~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~~~~l~~~~~~~l 167 (169)
.+..+++|+.|++++|.++.+|..+..+++|+.|+ ++.+.+..+
T Consensus 236 ~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~---l~~N~l~~~ 279 (332)
T 2ft3_A 236 SLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVY---LHTNNITKV 279 (332)
T ss_dssp GGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEE---CCSSCCCBC
T ss_pred HhhCCCCCCEEECCCCcCeecChhhhcCccCCEEE---CCCCCCCcc
Confidence 67777788888888888887777777778888887 444555444
No 21
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.75 E-value=4.6e-17 Score=119.07 Aligned_cols=139 Identities=19% Similarity=0.319 Sum_probs=58.8
Q ss_pred CCCCcEEeeCCccccccCchhhcCCCCccEEEecCCCCCCCCCCCCccccccCCCCccEEEeeCCcCcccccccccccce
Q 038441 2 LKFPSTLNLFGLLKFRLFPEIMGRMEHLLVLRLLGTAIRGLPICLKLEKFSKSMKSLTMLILDGTTIRELPLSVELLTGL 81 (169)
Q Consensus 2 l~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~lp~~~~~~~~L 81 (169)
++.|++|++++| .++.+++ +..+++|++|++++|.+++++ .+ ..+++|++|++++|.++.++. +..+++|
T Consensus 62 l~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~n~l~~~~------~~-~~l~~L~~L~l~~n~l~~~~~-l~~l~~L 131 (308)
T 1h6u_A 62 LNNLIGLELKDN-QITDLAP-LKNLTKITELELSGNPLKNVS------AI-AGLQSIKTLDLTSTQITDVTP-LAGLSNL 131 (308)
T ss_dssp CTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSCCCSCCG------GG-TTCTTCCEEECTTSCCCCCGG-GTTCTTC
T ss_pred cCCCCEEEccCC-cCCCChh-HccCCCCCEEEccCCcCCCch------hh-cCCCCCCEEECCCCCCCCchh-hcCCCCC
Confidence 345566666554 3444444 555666666666665544421 00 333444444444444444332 3444444
Q ss_pred E-EEecccccCCccccccccCCccCEEecCCCCCCCCcchhhhcCCCCceEeccCCcceecChhhhcCCCcceEE
Q 038441 82 L-LNLKDWQYLESLPSTINGLKSFKILNLSSCSKLENVPENLGKVESLEELDISRTAIRQLPTSIFLLKNLKAVD 155 (169)
Q Consensus 82 ~-l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~ 155 (169)
+ +++++|. +..++. +..+++|++|++++ +.+..++. +..+++|+.|++++|.++.++. +..+++|++|+
T Consensus 132 ~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~-n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~ 201 (308)
T 1h6u_A 132 QVLYLDLNQ-ITNISP-LAGLTNLQYLSIGN-AQVSDLTP-LANLSKLTTLKADDNKISDISP-LASLPNLIEVH 201 (308)
T ss_dssp CEEECCSSC-CCCCGG-GGGCTTCCEEECCS-SCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEE
T ss_pred CEEECCCCc-cCcCcc-ccCCCCccEEEccC-CcCCCChh-hcCCCCCCEEECCCCccCcChh-hcCCCCCCEEE
Confidence 4 4444432 222221 33444444444443 22223322 3344444444444444443332 33334444444
No 22
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.75 E-value=6.2e-18 Score=134.56 Aligned_cols=159 Identities=16% Similarity=0.272 Sum_probs=112.0
Q ss_pred CCcEEeeCCccccccCchhhcCCCCccEEEecCCCCC------C-------CC---------------------------
Q 038441 4 FPSTLNLFGLLKFRLFPEIMGRMEHLLVLRLLGTAIR------G-------LP--------------------------- 43 (169)
Q Consensus 4 ~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~------~-------~~--------------------------- 43 (169)
.++.|++++++....+|+.+..++.|++|++++|.+. + ++
T Consensus 82 ~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~ 161 (636)
T 4eco_A 82 RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDL 161 (636)
T ss_dssp CEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHH
T ss_pred CEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHH
Confidence 4567788877766677777888888888888887541 0 00
Q ss_pred -----------------------------CCCCccccc---cCCCCccEEEeeCCcCcc------------------ccc
Q 038441 44 -----------------------------ICLKLEKFS---KSMKSLTMLILDGTTIRE------------------LPL 73 (169)
Q Consensus 44 -----------------------------~~~~l~~~~---~~~~~L~~L~l~~~~~~~------------------lp~ 73 (169)
.++.++.+| ..+++|++|++++|.++. +|+
T Consensus 162 ~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~ 241 (636)
T 4eco_A 162 IKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE 241 (636)
T ss_dssp HHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS
T ss_pred HHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCch
Confidence 023444556 567778888888888776 777
Q ss_pred ccc--cccceE-EEecccccCCccccccccCCccCEEecCCCCCCC--CcchhhhcC------CCCceEeccCCcceecC
Q 038441 74 SVE--LLTGLL-LNLKDWQYLESLPSTINGLKSFKILNLSSCSKLE--NVPENLGKV------ESLEELDISRTAIRQLP 142 (169)
Q Consensus 74 ~~~--~~~~L~-l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~l------~~L~~L~l~~n~l~~~~ 142 (169)
.++ .+++|+ +++++|...+.+|..++++++|++|++++|..+. .+|..++.+ ++|++|++++|.++.+|
T Consensus 242 ~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip 321 (636)
T 4eco_A 242 DLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFP 321 (636)
T ss_dssp CCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCC
T ss_pred hhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccC
Confidence 777 788888 8888776677777777788888888888754243 467766665 77777777777777777
Q ss_pred h--hhhcCCCcceEEcccccccccc
Q 038441 143 T--SIFLLKNLKAVDHYHLHHGICA 165 (169)
Q Consensus 143 ~--~~~~l~~L~~L~~~~l~~~~~~ 165 (169)
. .+..+++|++|+ ++.+.+.
T Consensus 322 ~~~~l~~l~~L~~L~---L~~N~l~ 343 (636)
T 4eco_A 322 VETSLQKMKKLGMLE---CLYNQLE 343 (636)
T ss_dssp CHHHHTTCTTCCEEE---CCSCCCE
T ss_pred chhhhccCCCCCEEe---CcCCcCc
Confidence 7 677777777777 4445444
No 23
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.75 E-value=2.9e-17 Score=125.41 Aligned_cols=148 Identities=20% Similarity=0.310 Sum_probs=68.2
Q ss_pred CCCCcEEeeCCccccccCchhhcCCCCccEEEecCCCCCCCCCCCCccccccCCCCccEEEeeCCcCccccc-ccccccc
Q 038441 2 LKFPSTLNLFGLLKFRLFPEIMGRMEHLLVLRLLGTAIRGLPICLKLEKFSKSMKSLTMLILDGTTIRELPL-SVELLTG 80 (169)
Q Consensus 2 l~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~lp~-~~~~~~~ 80 (169)
+++|++|++++|......+..+..+++|++|++++|.++.++. ..+ ..+++|++|++++|.++.+++ .+..+++
T Consensus 87 l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~-~~l~~L~~L~L~~N~i~~~~~~~~~~l~~ 161 (440)
T 3zyj_A 87 LRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPN----GAF-VYLSKLKELWLRNNPIESIPSYAFNRIPS 161 (440)
T ss_dssp CSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCT----TTS-CSCSSCCEEECCSCCCCEECTTTTTTCTT
T ss_pred CCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCH----hHh-hccccCceeeCCCCcccccCHHHhhhCcc
Confidence 3455555555543222223445555666666666654443211 000 344555555655555554443 2444555
Q ss_pred eE-EEecccccCCcccc-ccccCCccCEEecCCCCCCCCc-----------------------chhhhcCCCCceEeccC
Q 038441 81 LL-LNLKDWQYLESLPS-TINGLKSFKILNLSSCSKLENV-----------------------PENLGKVESLEELDISR 135 (169)
Q Consensus 81 L~-l~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~-----------------------~~~~~~l~~L~~L~l~~ 135 (169)
|+ +++++|+....++. .+..+++|++|++++ +.+..+ |..+.++++|+.|++++
T Consensus 162 L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 240 (440)
T 3zyj_A 162 LRRLDLGELKRLSYISEGAFEGLSNLRYLNLAM-CNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQ 240 (440)
T ss_dssp CCEEECCCCTTCCEECTTTTTTCSSCCEEECTT-SCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred cCEeCCCCCCCcceeCcchhhcccccCeecCCC-CcCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCC
Confidence 55 55554333333332 334444444444444 233333 33444444555555555
Q ss_pred CcceecCh-hhhcCCCcceEE
Q 038441 136 TAIRQLPT-SIFLLKNLKAVD 155 (169)
Q Consensus 136 n~l~~~~~-~~~~l~~L~~L~ 155 (169)
|.++.++. .+..+++|+.|+
T Consensus 241 n~l~~~~~~~~~~l~~L~~L~ 261 (440)
T 3zyj_A 241 SQIQVIERNAFDNLQSLVEIN 261 (440)
T ss_dssp CCCCEECTTSSTTCTTCCEEE
T ss_pred CceeEEChhhhcCCCCCCEEE
Confidence 55543322 444555555555
No 24
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.75 E-value=1.2e-17 Score=122.56 Aligned_cols=110 Identities=14% Similarity=0.069 Sum_probs=66.6
Q ss_pred cCCCCccEEEeeCCcCccccc-ccccccceE-EEecccccCCcccccc-ccCCccCEEecCCCCCCCCcchhhhcCCCCc
Q 038441 53 KSMKSLTMLILDGTTIRELPL-SVELLTGLL-LNLKDWQYLESLPSTI-NGLKSFKILNLSSCSKLENVPENLGKVESLE 129 (169)
Q Consensus 53 ~~~~~L~~L~l~~~~~~~lp~-~~~~~~~L~-l~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 129 (169)
..+++|+.|++++|.++.+++ .+..+++|+ +++++|......+..+ ..+++|++|++++ +.+..++. ...+++|+
T Consensus 117 ~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~-~~~l~~L~ 194 (317)
T 3o53_A 117 SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY-NFIYDVKG-QVVFAKLK 194 (317)
T ss_dssp CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT-SCCCEEEC-CCCCTTCC
T ss_pred cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCC-CcCccccc-ccccccCC
Confidence 445567777777777776544 466777888 8888774444334444 3567777777776 34444433 22356666
Q ss_pred eEeccCCcceecChhhhcCCCcceEEcccccccccccC
Q 038441 130 ELDISRTAIRQLPTSIFLLKNLKAVDHYHLHHGICASL 167 (169)
Q Consensus 130 ~L~l~~n~l~~~~~~~~~l~~L~~L~~~~l~~~~~~~l 167 (169)
+|++++|.++.+|..+..+++|+.|+ ++.+.+..+
T Consensus 195 ~L~Ls~N~l~~l~~~~~~l~~L~~L~---L~~N~l~~l 229 (317)
T 3o53_A 195 TLDLSSNKLAFMGPEFQSAAGVTWIS---LRNNKLVLI 229 (317)
T ss_dssp EEECCSSCCCEECGGGGGGTTCSEEE---CTTSCCCEE
T ss_pred EEECCCCcCCcchhhhcccCcccEEE---CcCCcccch
Confidence 66666666666666566666666666 444444433
No 25
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.74 E-value=1.3e-17 Score=121.52 Aligned_cols=147 Identities=23% Similarity=0.284 Sum_probs=72.7
Q ss_pred CCCcEEeeCCccccccCchhhcCCCCccEEEecCCCCCCCCCCCCccccccCCCCccEEEeeCCcCccc-ccccccccce
Q 038441 3 KFPSTLNLFGLLKFRLFPEIMGRMEHLLVLRLLGTAIRGLPICLKLEKFSKSMKSLTMLILDGTTIREL-PLSVELLTGL 81 (169)
Q Consensus 3 ~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l-p~~~~~~~~L 81 (169)
++|++|++++|. +..+|..+..+++|++|++++|.+++++.. ..+ ..+++|++|++++|.++.. +..+..+++|
T Consensus 78 ~~L~~L~Ls~n~-i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 152 (306)
T 2z66_A 78 TSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEF---SVF-LSLRNLIYLDISHTHTRVAFNGIFNGLSSL 152 (306)
T ss_dssp SCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTSEEESSTTT---TTT-TTCTTCCEEECTTSCCEECSTTTTTTCTTC
T ss_pred cccCEEECCCCc-cccChhhcCCCCCCCEEECCCCcccccccc---hhh-hhccCCCEEECCCCcCCccchhhcccCcCC
Confidence 344444544432 333444444555555555555444332110 000 3445556666666655533 3335555566
Q ss_pred E-EEecccccCC-ccccccccCCccCEEecCCCCCCCCc-chhhhcCCCCceEeccCCcceecCh-hhhcCCCcceEE
Q 038441 82 L-LNLKDWQYLE-SLPSTINGLKSFKILNLSSCSKLENV-PENLGKVESLEELDISRTAIRQLPT-SIFLLKNLKAVD 155 (169)
Q Consensus 82 ~-l~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~ 155 (169)
+ +++++|.... ..|..+..+++|++|++++| .+..+ |..+.++++|++|++++|.++.++. .+..+++|+.|+
T Consensus 153 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 229 (306)
T 2z66_A 153 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLD 229 (306)
T ss_dssp CEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEE
T ss_pred CEEECCCCccccccchhHHhhCcCCCEEECCCC-CcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeE
Confidence 6 6666553333 24445555566666666653 33333 4455555666666666666654443 445555566665
No 26
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.74 E-value=3.3e-18 Score=136.12 Aligned_cols=153 Identities=12% Similarity=0.161 Sum_probs=94.0
Q ss_pred CCCCcEEeeCCcccccc-----------------Cchhhc--CCCCccEEEecCCCCCCCCCCCCccccc---cCCCCcc
Q 038441 2 LKFPSTLNLFGLLKFRL-----------------FPEIMG--RMEHLLVLRLLGTAIRGLPICLKLEKFS---KSMKSLT 59 (169)
Q Consensus 2 l~~l~~L~l~~~~~~~~-----------------~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~l~~~~---~~~~~L~ 59 (169)
+++|++|++++|..... +|+.+. .+++|++|++++|.+.+ .+| ..+++|+
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~--------~~p~~l~~l~~L~ 276 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLT--------KLPTFLKALPEMQ 276 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCS--------SCCTTTTTCSSCC
T ss_pred ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCc--------cChHHHhcCCCCC
Confidence 56778888887663332 777776 78888888888866554 223 4556666
Q ss_pred EEEeeCCc-Ccc--cccccccc------cceE-EEecccccCCcccc--ccccCCccCEEecCCCCCCCCcchhhhcCCC
Q 038441 60 MLILDGTT-IRE--LPLSVELL------TGLL-LNLKDWQYLESLPS--TINGLKSFKILNLSSCSKLENVPENLGKVES 127 (169)
Q Consensus 60 ~L~l~~~~-~~~--lp~~~~~~------~~L~-l~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 127 (169)
+|++++|. ++. +|..++.+ ++|+ +++++|... .+|. .+..+++|++|++++|...+.+| .+.++++
T Consensus 277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~ 354 (636)
T 4eco_A 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIK 354 (636)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEE
T ss_pred EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCC
Confidence 66666665 653 56555554 6666 666666333 5565 56666666666666633222555 5666666
Q ss_pred CceEeccCCcceecChhhhcCCC-cceEEcccccccccccC
Q 038441 128 LEELDISRTAIRQLPTSIFLLKN-LKAVDHYHLHHGICASL 167 (169)
Q Consensus 128 L~~L~l~~n~l~~~~~~~~~l~~-L~~L~~~~l~~~~~~~l 167 (169)
|++|++++|.++.+|..+..+++ |++|+ ++.+.+..+
T Consensus 355 L~~L~L~~N~l~~lp~~l~~l~~~L~~L~---Ls~N~l~~l 392 (636)
T 4eco_A 355 LASLNLAYNQITEIPANFCGFTEQVENLS---FAHNKLKYI 392 (636)
T ss_dssp ESEEECCSSEEEECCTTSEEECTTCCEEE---CCSSCCSSC
T ss_pred CCEEECCCCccccccHhhhhhcccCcEEE---ccCCcCccc
Confidence 66666666666666666666666 66666 444444433
No 27
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.74 E-value=1.1e-16 Score=117.73 Aligned_cols=155 Identities=22% Similarity=0.261 Sum_probs=84.2
Q ss_pred CCCCcEEeeCCccccccCchhhcCCCCccEEEecCCCCCCCCCCCCccccccCCCCccEEEeeCCcCcccccc-cccccc
Q 038441 2 LKFPSTLNLFGLLKFRLFPEIMGRMEHLLVLRLLGTAIRGLPICLKLEKFSKSMKSLTMLILDGTTIRELPLS-VELLTG 80 (169)
Q Consensus 2 l~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~lp~~-~~~~~~ 80 (169)
+++|++|++++|......|..+..+++|++|++++|.++.++. ...++|++|++++|.++.+++. +..+++
T Consensus 75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~--------~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 146 (330)
T 1xku_A 75 LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPE--------KMPKTLQELRVHENEITKVRKSVFNGLNQ 146 (330)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCS--------SCCTTCCEEECCSSCCCBBCHHHHTTCTT
T ss_pred CCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccCh--------hhcccccEEECCCCcccccCHhHhcCCcc
Confidence 3455566665544333234455556666666666654443221 1223444555554444443332 344444
Q ss_pred eE-EEecccccCC--ccccccccC---------------------CccCEEecCCCCCCCCc-chhhhcCCCCceEeccC
Q 038441 81 LL-LNLKDWQYLE--SLPSTINGL---------------------KSFKILNLSSCSKLENV-PENLGKVESLEELDISR 135 (169)
Q Consensus 81 L~-l~l~~~~~~~--~~~~~~~~~---------------------~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~ 135 (169)
|+ +++++|.... ..+..+..+ ++|++|++++| .+..+ +..+..+++|+.|++++
T Consensus 147 L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~ 225 (330)
T 1xku_A 147 MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGN-KITKVDAASLKGLNNLAKLGLSF 225 (330)
T ss_dssp CCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTS-CCCEECTGGGTTCTTCCEEECCS
T ss_pred ccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCC-cCCccCHHHhcCCCCCCEEECCC
Confidence 44 4444442211 122233333 45666666653 33333 56677888888888888
Q ss_pred CcceecCh-hhhcCCCcceEEcccccccccccCC
Q 038441 136 TAIRQLPT-SIFLLKNLKAVDHYHLHHGICASLP 168 (169)
Q Consensus 136 n~l~~~~~-~~~~l~~L~~L~~~~l~~~~~~~l~ 168 (169)
|.++.++. .+..+++|+.|+ ++.+.+..+|
T Consensus 226 n~l~~~~~~~~~~l~~L~~L~---L~~N~l~~lp 256 (330)
T 1xku_A 226 NSISAVDNGSLANTPHLRELH---LNNNKLVKVP 256 (330)
T ss_dssp SCCCEECTTTGGGSTTCCEEE---CCSSCCSSCC
T ss_pred CcCceeChhhccCCCCCCEEE---CCCCcCccCC
Confidence 88886654 677888888888 5556665554
No 28
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.74 E-value=3.7e-17 Score=117.58 Aligned_cols=142 Identities=24% Similarity=0.290 Sum_probs=92.3
Q ss_pred CCcEEeeCCccccccCch-hhcCCCCccEEEecCCCCCCCCCCCCccccccCCCCccEEEeeCCcCcccc-cccccccce
Q 038441 4 FPSTLNLFGLLKFRLFPE-IMGRMEHLLVLRLLGTAIRGLPICLKLEKFSKSMKSLTMLILDGTTIRELP-LSVELLTGL 81 (169)
Q Consensus 4 ~l~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~lp-~~~~~~~~L 81 (169)
.+++|++++|. ++.++. .+..+++|++|++++|.++.++. ..+ ..+++|++|++++|.++.++ ..+..+++|
T Consensus 29 ~l~~L~ls~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (276)
T 2z62_A 29 STKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCEIQTIED----GAY-QSLSHLSTLILTGNPIQSLALGAFSGLSSL 102 (276)
T ss_dssp TCCEEECTTCC-CCEECTTTTTTCTTCSEEECTTCCCCEECT----TTT-TTCTTCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred CccEEECCCCc-ccccCHhHhccccCCcEEECCCCcCCccCH----HHc-cCCcCCCEEECCCCccCccChhhhcCCccc
Confidence 57888888865 444443 67788888999998865544210 011 45677788888888777665 346777777
Q ss_pred E-EEecccccCCccccccccCCccCEEecCCCCCCCC--cchhhhcCCCCceEeccCCcceecCh-hhhcCCCcc
Q 038441 82 L-LNLKDWQYLESLPSTINGLKSFKILNLSSCSKLEN--VPENLGKVESLEELDISRTAIRQLPT-SIFLLKNLK 152 (169)
Q Consensus 82 ~-l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~ 152 (169)
+ +++++|......+..+..+++|++|++++| .+.. +|..+.++++|++|++++|.++.++. .+..+.+++
T Consensus 103 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 176 (276)
T 2z62_A 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176 (276)
T ss_dssp CEEECTTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCT
T ss_pred cEEECCCCCccccCchhcccCCCCCEEECcCC-ccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcc
Confidence 7 777776443333335667777888887773 4433 56777777778888887777775543 444444333
No 29
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.74 E-value=1.6e-17 Score=121.01 Aligned_cols=161 Identities=20% Similarity=0.284 Sum_probs=107.3
Q ss_pred CCCcEEeeCCccccccCchh-hcCCCCccEEEecCCCCCCCC-----------------CCCCccccc---cCCCCccEE
Q 038441 3 KFPSTLNLFGLLKFRLFPEI-MGRMEHLLVLRLLGTAIRGLP-----------------ICLKLEKFS---KSMKSLTML 61 (169)
Q Consensus 3 ~~l~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~-----------------~~~~l~~~~---~~~~~L~~L 61 (169)
+.+++|++++|. ++.+|.. +..+++|++|++++|.++... ..+.++.+| ..+++|++|
T Consensus 28 ~~l~~L~L~~n~-l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEE
T ss_pred CCCCEEECCCCc-cCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEE
Confidence 467888888854 5566654 677888888888887765320 012333343 456677777
Q ss_pred EeeCCcCccccc--ccccccceE-EEecccccCCccccccccCCccCEEecCCCCCCC-CcchhhhcCCCCceEeccCCc
Q 038441 62 ILDGTTIRELPL--SVELLTGLL-LNLKDWQYLESLPSTINGLKSFKILNLSSCSKLE-NVPENLGKVESLEELDISRTA 137 (169)
Q Consensus 62 ~l~~~~~~~lp~--~~~~~~~L~-l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~n~ 137 (169)
++++|.++.++. .+..+++|+ +++++|......+..+..+++|++|++++|.... ..|..+..+++|++|++++|.
T Consensus 107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 186 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186 (306)
T ss_dssp ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC
Confidence 777777776553 466677777 7777765444455566677788888887743322 367777888888888888888
Q ss_pred ceec-ChhhhcCCCcceEEcccccccccccC
Q 038441 138 IRQL-PTSIFLLKNLKAVDHYHLHHGICASL 167 (169)
Q Consensus 138 l~~~-~~~~~~l~~L~~L~~~~l~~~~~~~l 167 (169)
++.+ |..+..+++|+.|+ ++.+.+..+
T Consensus 187 l~~~~~~~~~~l~~L~~L~---L~~N~l~~~ 214 (306)
T 2z66_A 187 LEQLSPTAFNSLSSLQVLN---MSHNNFFSL 214 (306)
T ss_dssp CCEECTTTTTTCTTCCEEE---CTTSCCSBC
T ss_pred cCCcCHHHhcCCCCCCEEE---CCCCccCcc
Confidence 8865 55777888888888 444444433
No 30
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.74 E-value=3.7e-17 Score=126.96 Aligned_cols=151 Identities=23% Similarity=0.304 Sum_probs=113.4
Q ss_pred CCCCcEEeeCCccccccCchhhcCCCCccEEEecCCCCCCCCCCCCccccc---cCCCCccEEEeeCCcCcc-cccc-cc
Q 038441 2 LKFPSTLNLFGLLKFRLFPEIMGRMEHLLVLRLLGTAIRGLPICLKLEKFS---KSMKSLTMLILDGTTIRE-LPLS-VE 76 (169)
Q Consensus 2 l~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~---~~~~~L~~L~l~~~~~~~-lp~~-~~ 76 (169)
+++|++|++++|......|..+..+++|++|++++|.+++ +..+| ..+++|++|++++|.++. +|.. +.
T Consensus 323 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~------l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~ 396 (520)
T 2z7x_B 323 ISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKE------LSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCS 396 (520)
T ss_dssp CCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCB------HHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCC
T ss_pred CCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCc------cccchHHHhhCCCCCEEECCCCcCCcccccchhc
Confidence 4567788887766555566677778888888888865543 22333 677888899999888886 7765 67
Q ss_pred cccceE-EEecccccCCccccccccCCccCEEecCCCCCCCCcchhhhcCCCCceEeccCCcceecChh-hhcCCCcceE
Q 038441 77 LLTGLL-LNLKDWQYLESLPSTINGLKSFKILNLSSCSKLENVPENLGKVESLEELDISRTAIRQLPTS-IFLLKNLKAV 154 (169)
Q Consensus 77 ~~~~L~-l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L 154 (169)
.+++|+ +++++|...+..+..+. ++|++|++++ +.+..+|..+..+++|++|++++|+++.+|.. +..+++|++|
T Consensus 397 ~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~-N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L 473 (520)
T 2z7x_B 397 WTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHS-NKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKI 473 (520)
T ss_dssp CCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCS-SCCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCccCCEEECcCCCCCcchhhhhc--ccCCEEECCC-CcccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEE
Confidence 778888 88888865555555432 6889999988 56778888888899999999999999988875 7888889999
Q ss_pred Eccccccccc
Q 038441 155 DHYHLHHGIC 164 (169)
Q Consensus 155 ~~~~l~~~~~ 164 (169)
+ +++|.|
T Consensus 474 ~---l~~N~~ 480 (520)
T 2z7x_B 474 W---LHTNPW 480 (520)
T ss_dssp E---CCSSCB
T ss_pred E---CcCCCC
Confidence 8 555544
No 31
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.74 E-value=5.4e-18 Score=138.58 Aligned_cols=162 Identities=15% Similarity=0.244 Sum_probs=116.7
Q ss_pred CCcEEeeCCccccccCchhhcCCCCccEEEe-cCCCCCCCC---------------------------------------
Q 038441 4 FPSTLNLFGLLKFRLFPEIMGRMEHLLVLRL-LGTAIRGLP--------------------------------------- 43 (169)
Q Consensus 4 ~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l-~~n~l~~~~--------------------------------------- 43 (169)
.++.|++++++....+|+.+..++.|++|++ ++|.+++..
T Consensus 324 ~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l 403 (876)
T 4ecn_A 324 RVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDL 403 (876)
T ss_dssp CEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHH
T ss_pred CEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHH
Confidence 4677888887777778888888888888888 776543310
Q ss_pred -----------------------------CCCCccccc---cCCCCccEEEeeCCcCcc------------------ccc
Q 038441 44 -----------------------------ICLKLEKFS---KSMKSLTMLILDGTTIRE------------------LPL 73 (169)
Q Consensus 44 -----------------------------~~~~l~~~~---~~~~~L~~L~l~~~~~~~------------------lp~ 73 (169)
.++.++.+| ..+++|++|++++|.++. +|+
T Consensus 404 ~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~ 483 (876)
T 4ecn_A 404 LQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENE 483 (876)
T ss_dssp HHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS
T ss_pred HHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCCh
Confidence 012333355 567788888888888886 788
Q ss_pred ccc--cccceE-EEecccccCCccccccccCCccCEEecCCCCCCC--CcchhhhcCC-------CCceEeccCCcceec
Q 038441 74 SVE--LLTGLL-LNLKDWQYLESLPSTINGLKSFKILNLSSCSKLE--NVPENLGKVE-------SLEELDISRTAIRQL 141 (169)
Q Consensus 74 ~~~--~~~~L~-l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~l~-------~L~~L~l~~n~l~~~ 141 (169)
.++ .+++|+ +++++|+..+.+|..+.++++|++|++++|..+. .+|..++++. +|++|++++|.++.+
T Consensus 484 ~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~i 563 (876)
T 4ecn_A 484 ELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEF 563 (876)
T ss_dssp CCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBC
T ss_pred hhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCcc
Confidence 776 888888 8888887777788888888888888888754244 4676665554 788888888888877
Q ss_pred Ch--hhhcCCCcceEEcccccccccccCC
Q 038441 142 PT--SIFLLKNLKAVDHYHLHHGICASLP 168 (169)
Q Consensus 142 ~~--~~~~l~~L~~L~~~~l~~~~~~~l~ 168 (169)
|. .+..+++|+.|+ ++.+.+..+|
T Consensus 564 p~~~~l~~L~~L~~L~---Ls~N~l~~lp 589 (876)
T 4ecn_A 564 PASASLQKMVKLGLLD---CVHNKVRHLE 589 (876)
T ss_dssp CCHHHHTTCTTCCEEE---CTTSCCCBCC
T ss_pred CChhhhhcCCCCCEEE---CCCCCcccch
Confidence 77 777788888887 4445554443
No 32
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.74 E-value=7.4e-17 Score=117.10 Aligned_cols=97 Identities=24% Similarity=0.391 Sum_probs=63.4
Q ss_pred cCCCCccEEEeeCCcCcccccccccccceE-EEecccccCCccccccccCCccCEEecCCCCCCCCcchhhhcCCCCceE
Q 038441 53 KSMKSLTMLILDGTTIRELPLSVELLTGLL-LNLKDWQYLESLPSTINGLKSFKILNLSSCSKLENVPENLGKVESLEEL 131 (169)
Q Consensus 53 ~~~~~L~~L~l~~~~~~~lp~~~~~~~~L~-l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 131 (169)
..+++|++|++++|.++.+ +.+..+++|+ +++++|. +..+ ..+..+++|++|++++ +.+..++. +..+++|++|
T Consensus 109 ~~l~~L~~L~L~~n~i~~~-~~l~~l~~L~~L~l~~n~-l~~~-~~l~~l~~L~~L~L~~-N~l~~~~~-l~~l~~L~~L 183 (291)
T 1h6t_A 109 KDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLED-NQISDIVP-LAGLTKLQNL 183 (291)
T ss_dssp TTCTTCCEEECTTSCCCCC-GGGGGCTTCCEEECCSSC-CCCC-GGGGGCTTCSEEECCS-SCCCCCGG-GTTCTTCCEE
T ss_pred ccCCCCCEEECCCCcCCCC-hhhcCCCCCCEEEccCCc-CCcc-hhhccCCCCCEEEccC-Cccccchh-hcCCCccCEE
Confidence 5566677777777776665 3456667777 7777663 3333 4566677777777776 34555544 6677777777
Q ss_pred eccCCcceecChhhhcCCCcceEE
Q 038441 132 DISRTAIRQLPTSIFLLKNLKAVD 155 (169)
Q Consensus 132 ~l~~n~l~~~~~~~~~l~~L~~L~ 155 (169)
++++|.++.++. +..+++|+.|+
T Consensus 184 ~L~~N~i~~l~~-l~~l~~L~~L~ 206 (291)
T 1h6t_A 184 YLSKNHISDLRA-LAGLKNLDVLE 206 (291)
T ss_dssp ECCSSCCCBCGG-GTTCTTCSEEE
T ss_pred ECCCCcCCCChh-hccCCCCCEEE
Confidence 777777777653 66677777777
No 33
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.74 E-value=5.6e-17 Score=121.92 Aligned_cols=106 Identities=17% Similarity=0.217 Sum_probs=68.0
Q ss_pred CccEEEeeCCcCcccccccccccceE-EEecccccCCccccccccCCccCEEecCCCCCCCCcchhhhcCCCCceEeccC
Q 038441 57 SLTMLILDGTTIRELPLSVELLTGLL-LNLKDWQYLESLPSTINGLKSFKILNLSSCSKLENVPENLGKVESLEELDISR 135 (169)
Q Consensus 57 ~L~~L~l~~~~~~~lp~~~~~~~~L~-l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 135 (169)
+|+.|++++|.++.. +.+..+++|+ +++++|......+..+..+++|++|++++ +.+..++..+..+++|++|++++
T Consensus 227 ~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~l~~L~~L~L~~ 304 (390)
T 3o6n_A 227 ELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN-NRLVALNLYGQPIPTLKVLDLSH 304 (390)
T ss_dssp SCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCS-SCCCEEECSSSCCTTCCEEECCS
T ss_pred cccEEECCCCCCccc-HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCC-CcCcccCcccCCCCCCCEEECCC
Confidence 344444444444433 3455667777 77777654444456667777777777776 45566666666677777777777
Q ss_pred CcceecChhhhcCCCcceEEcccccccccccC
Q 038441 136 TAIRQLPTSIFLLKNLKAVDHYHLHHGICASL 167 (169)
Q Consensus 136 n~l~~~~~~~~~l~~L~~L~~~~l~~~~~~~l 167 (169)
|.++.+|..+..+++|+.|+ +..+.+..+
T Consensus 305 n~l~~~~~~~~~l~~L~~L~---L~~N~i~~~ 333 (390)
T 3o6n_A 305 NHLLHVERNQPQFDRLENLY---LDHNSIVTL 333 (390)
T ss_dssp SCCCCCGGGHHHHTTCSEEE---CCSSCCCCC
T ss_pred CcceecCccccccCcCCEEE---CCCCcccee
Confidence 77777777677777777777 444544443
No 34
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.74 E-value=4.4e-17 Score=124.78 Aligned_cols=101 Identities=22% Similarity=0.376 Sum_probs=48.8
Q ss_pred CCCCccEEEeeCCcCccccc-ccccccceE-EEecccccCCcccc-ccccCCccCEEecCCCCCCCCc------------
Q 038441 54 SMKSLTMLILDGTTIRELPL-SVELLTGLL-LNLKDWQYLESLPS-TINGLKSFKILNLSSCSKLENV------------ 118 (169)
Q Consensus 54 ~~~~L~~L~l~~~~~~~lp~-~~~~~~~L~-l~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~------------ 118 (169)
.+++|++|++++|.++.+|. .+..+++|+ +++++|+....++. .+..+++|++|++++ +.+..+
T Consensus 145 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~l~~L~~L 223 (452)
T 3zyi_A 145 YLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGM-CNIKDMPNLTPLVGLEEL 223 (452)
T ss_dssp SCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTT-SCCSSCCCCTTCTTCCEE
T ss_pred ccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCC-CcccccccccccccccEE
Confidence 35556666666666655544 244455555 55554333333332 233444444444444 222222
Q ss_pred -----------chhhhcCCCCceEeccCCcceec-ChhhhcCCCcceEE
Q 038441 119 -----------PENLGKVESLEELDISRTAIRQL-PTSIFLLKNLKAVD 155 (169)
Q Consensus 119 -----------~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~l~~L~~L~ 155 (169)
|..+.++++|+.|++++|.++.+ +..+..+++|+.|+
T Consensus 224 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 272 (452)
T 3zyi_A 224 EMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELN 272 (452)
T ss_dssp ECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred ECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEE
Confidence 33445555555555555555533 23445555566665
No 35
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.74 E-value=8e-17 Score=117.77 Aligned_cols=148 Identities=20% Similarity=0.289 Sum_probs=119.6
Q ss_pred CCCCcEEeeCCccccccCchhhcCCCCccEEEecCCCCCCCCCCCCccccccCCCCccEEEeeCCcCcccccccccccce
Q 038441 2 LKFPSTLNLFGLLKFRLFPEIMGRMEHLLVLRLLGTAIRGLPICLKLEKFSKSMKSLTMLILDGTTIRELPLSVELLTGL 81 (169)
Q Consensus 2 l~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~lp~~~~~~~~L 81 (169)
++.|++|++++|. ++.++ .+..+++|++|++++|.+++++ .+ ..+++|++|++++|.++.+++ +..+++|
T Consensus 84 l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~l~~n~l~~~~------~l-~~l~~L~~L~l~~n~l~~~~~-l~~l~~L 153 (308)
T 1h6u_A 84 LTKITELELSGNP-LKNVS-AIAGLQSIKTLDLTSTQITDVT------PL-AGLSNLQVLYLDLNQITNISP-LAGLTNL 153 (308)
T ss_dssp CCSCCEEECCSCC-CSCCG-GGTTCTTCCEEECTTSCCCCCG------GG-TTCTTCCEEECCSSCCCCCGG-GGGCTTC
T ss_pred CCCCCEEEccCCc-CCCch-hhcCCCCCCEEECCCCCCCCch------hh-cCCCCCCEEECCCCccCcCcc-ccCCCCc
Confidence 6789999999975 66665 5888999999999997766531 12 678899999999999998866 7889999
Q ss_pred E-EEecccccCCccccccccCCccCEEecCCCCCCCCcchhhhcCCCCceEeccCCcceecChhhhcCCCcceEEccccc
Q 038441 82 L-LNLKDWQYLESLPSTINGLKSFKILNLSSCSKLENVPENLGKVESLEELDISRTAIRQLPTSIFLLKNLKAVDHYHLH 160 (169)
Q Consensus 82 ~-l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~~~~l~ 160 (169)
+ +++++| .+..++. +..+++|++|++++ +.+..++. +..+++|++|++++|.++.++ .+..+++|+.|+ ++
T Consensus 154 ~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~-n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~---l~ 225 (308)
T 1h6u_A 154 QYLSIGNA-QVSDLTP-LANLSKLTTLKADD-NKISDISP-LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVT---LT 225 (308)
T ss_dssp CEEECCSS-CCCCCGG-GTTCTTCCEEECCS-SCCCCCGG-GGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEE---EE
T ss_pred cEEEccCC-cCCCChh-hcCCCCCCEEECCC-CccCcChh-hcCCCCCCEEEccCCccCccc-cccCCCCCCEEE---cc
Confidence 9 999998 4444554 78899999999998 56666665 788999999999999999887 478899999999 55
Q ss_pred ccccccC
Q 038441 161 HGICASL 167 (169)
Q Consensus 161 ~~~~~~l 167 (169)
.+.+...
T Consensus 226 ~N~i~~~ 232 (308)
T 1h6u_A 226 NQTITNQ 232 (308)
T ss_dssp EEEEECC
T ss_pred CCeeecC
Confidence 5555443
No 36
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.73 E-value=3.4e-17 Score=115.49 Aligned_cols=155 Identities=15% Similarity=0.223 Sum_probs=78.1
Q ss_pred CCcEEeeCCccccccCch-hhcCCCCccEEEecCCC-CCCCCCCCCccccccCCCCccEEEeeC-CcCccccc-cccccc
Q 038441 4 FPSTLNLFGLLKFRLFPE-IMGRMEHLLVLRLLGTA-IRGLPICLKLEKFSKSMKSLTMLILDG-TTIRELPL-SVELLT 79 (169)
Q Consensus 4 ~l~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~~~~~~~~L~~L~l~~-~~~~~lp~-~~~~~~ 79 (169)
.+++|+++++. ++.+|+ .+..+++|++|++++|. ++.++.. .+ ..+++|++|++++ |.++.+++ .+..++
T Consensus 32 ~l~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~----~f-~~l~~L~~L~l~~~n~l~~i~~~~f~~l~ 105 (239)
T 2xwt_C 32 STQTLKLIETH-LRTIPSHAFSNLPNISRIYVSIDVTLQQLESH----SF-YNLSKVTHIEIRNTRNLTYIDPDALKELP 105 (239)
T ss_dssp TCCEEEEESCC-CSEECTTTTTTCTTCCEEEEECCSSCCEECTT----TE-ESCTTCCEEEEEEETTCCEECTTSEECCT
T ss_pred cccEEEEeCCc-ceEECHHHccCCCCCcEEeCCCCCCcceeCHh----Hc-CCCcCCcEEECCCCCCeeEcCHHHhCCCC
Confidence 56777777754 444444 46667777777777754 4332100 00 3344455555554 44444433 244444
Q ss_pred ceE-EEecccc-------------------------cCCccc-cccccCCccC-EEecCCCCCCCCcchhhhcCCCCceE
Q 038441 80 GLL-LNLKDWQ-------------------------YLESLP-STINGLKSFK-ILNLSSCSKLENVPENLGKVESLEEL 131 (169)
Q Consensus 80 ~L~-l~l~~~~-------------------------~~~~~~-~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~l~~L~~L 131 (169)
+|+ +++++|. .+..++ ..+..+++|+ ++++++ +.+..+|.......+|+.|
T Consensus 106 ~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~-n~l~~i~~~~~~~~~L~~L 184 (239)
T 2xwt_C 106 LLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN-NGFTSVQGYAFNGTKLDAV 184 (239)
T ss_dssp TCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCS-CCCCEECTTTTTTCEEEEE
T ss_pred CCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCC-CCCcccCHhhcCCCCCCEE
Confidence 444 4444442 222222 2344555566 666655 3444555433333556666
Q ss_pred eccCCc-ceecCh-hhhcC-CCcceEEcccccccccccCC
Q 038441 132 DISRTA-IRQLPT-SIFLL-KNLKAVDHYHLHHGICASLP 168 (169)
Q Consensus 132 ~l~~n~-l~~~~~-~~~~l-~~L~~L~~~~l~~~~~~~l~ 168 (169)
++++|. ++.+|. .+..+ ++|+.|+ ++.+.+..+|
T Consensus 185 ~L~~n~~l~~i~~~~~~~l~~~L~~L~---l~~N~l~~l~ 221 (239)
T 2xwt_C 185 YLNKNKYLTVIDKDAFGGVYSGPSLLD---VSQTSVTALP 221 (239)
T ss_dssp ECTTCTTCCEECTTTTTTCSBCCSEEE---CTTCCCCCCC
T ss_pred EcCCCCCcccCCHHHhhccccCCcEEE---CCCCccccCC
Confidence 666663 665543 45555 6666666 4444444443
No 37
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.73 E-value=4.3e-17 Score=117.21 Aligned_cols=148 Identities=22% Similarity=0.272 Sum_probs=82.1
Q ss_pred CCCCcEEeeCCccccccCc-hhhcCCCCccEEEecCCCCCCCCCCCCccccccCCCCccEEEeeCCcCccccc-cccccc
Q 038441 2 LKFPSTLNLFGLLKFRLFP-EIMGRMEHLLVLRLLGTAIRGLPICLKLEKFSKSMKSLTMLILDGTTIRELPL-SVELLT 79 (169)
Q Consensus 2 l~~l~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~lp~-~~~~~~ 79 (169)
++.|++|++++|. ++.++ ..+..+++|++|++++|.+++++. ..+ ..+++|++|++++|.++.+++ .+..++
T Consensus 51 l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 124 (276)
T 2z62_A 51 FPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLAL----GAF-SGLSSLQKLVAVETNLASLENFPIGHLK 124 (276)
T ss_dssp CTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCEECT----TTT-TTCTTCCEEECTTSCCCCSTTCCCTTCT
T ss_pred ccCCcEEECCCCc-CCccCHHHccCCcCCCEEECCCCccCccCh----hhh-cCCccccEEECCCCCccccCchhcccCC
Confidence 5678889998875 44444 467788889999998877654210 000 334445555555555544433 244445
Q ss_pred ceE-EEecccccCC-ccccccccCCccCEEecCCC---------------------------CCCCCcchhhhcCCCCce
Q 038441 80 GLL-LNLKDWQYLE-SLPSTINGLKSFKILNLSSC---------------------------SKLENVPENLGKVESLEE 130 (169)
Q Consensus 80 ~L~-l~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~---------------------------~~~~~~~~~~~~l~~L~~ 130 (169)
+|+ +++++|.... .+|..+..+++|++|++++| +.+..++.......+|+.
T Consensus 125 ~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~ 204 (276)
T 2z62_A 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKE 204 (276)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEE
T ss_pred CCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccE
Confidence 555 5555443222 13444444555555555542 233333333333346777
Q ss_pred EeccCCcceecCh-hhhcCCCcceEE
Q 038441 131 LDISRTAIRQLPT-SIFLLKNLKAVD 155 (169)
Q Consensus 131 L~l~~n~l~~~~~-~~~~l~~L~~L~ 155 (169)
|++++|.++.+|. .+..+++|+.|+
T Consensus 205 L~L~~n~l~~~~~~~~~~l~~L~~L~ 230 (276)
T 2z62_A 205 LALDTNQLKSVPDGIFDRLTSLQKIW 230 (276)
T ss_dssp EECCSSCCSCCCTTTTTTCCSCCEEE
T ss_pred EECCCCceeecCHhHhcccccccEEE
Confidence 7777777776665 346677777777
No 38
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.73 E-value=2.4e-17 Score=127.53 Aligned_cols=111 Identities=14% Similarity=0.092 Sum_probs=73.3
Q ss_pred cCCCCccEEEeeCCcCccc-ccccccccceE-EEecccccCCccccccc-cCCccCEEecCCCCCCCCcchhhhcCCCCc
Q 038441 53 KSMKSLTMLILDGTTIREL-PLSVELLTGLL-LNLKDWQYLESLPSTIN-GLKSFKILNLSSCSKLENVPENLGKVESLE 129 (169)
Q Consensus 53 ~~~~~L~~L~l~~~~~~~l-p~~~~~~~~L~-l~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 129 (169)
..+++|+.|++++|.++.+ |..++.+++|+ +++++|......|..+. .+++|++|++++ +.+..++. ...+++|+
T Consensus 117 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~-N~l~~~~~-~~~l~~L~ 194 (487)
T 3oja_A 117 SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY-NFIYDVKG-QVVFAKLK 194 (487)
T ss_dssp CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT-SCCCEEEC-CCCCTTCC
T ss_pred cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCC-Cccccccc-cccCCCCC
Confidence 3456677777777777755 44577788888 88888755555555554 677778887777 34544433 33467777
Q ss_pred eEeccCCcceecChhhhcCCCcceEEcccccccccccCC
Q 038441 130 ELDISRTAIRQLPTSIFLLKNLKAVDHYHLHHGICASLP 168 (169)
Q Consensus 130 ~L~l~~n~l~~~~~~~~~l~~L~~L~~~~l~~~~~~~l~ 168 (169)
+|++++|.++.+|..+..+++|+.|+ ++.+.+..+|
T Consensus 195 ~L~Ls~N~l~~~~~~~~~l~~L~~L~---Ls~N~l~~lp 230 (487)
T 3oja_A 195 TLDLSSNKLAFMGPEFQSAAGVTWIS---LRNNKLVLIE 230 (487)
T ss_dssp EEECCSSCCCEECGGGGGGTTCSEEE---CTTSCCCEEC
T ss_pred EEECCCCCCCCCCHhHcCCCCccEEE---ecCCcCcccc
Confidence 77777777777766677777777777 4445444443
No 39
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.73 E-value=9.7e-17 Score=112.66 Aligned_cols=140 Identities=21% Similarity=0.298 Sum_probs=93.5
Q ss_pred EEeeCCccccccCchhhcCCCCccEEEecCCCCCCCCCCCCccccccCCCCccEEEeeCCcCcccccc-cccccceE-EE
Q 038441 7 TLNLFGLLKFRLFPEIMGRMEHLLVLRLLGTAIRGLPICLKLEKFSKSMKSLTMLILDGTTIRELPLS-VELLTGLL-LN 84 (169)
Q Consensus 7 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~lp~~-~~~~~~L~-l~ 84 (169)
.++.++ +.++.+|..+ .++|++|++++|.+++++. ..+ ..+++|++|++++|.++.+|+. +..+++|+ ++
T Consensus 23 ~v~c~~-~~l~~ip~~~--~~~L~~L~Ls~n~i~~~~~----~~~-~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~ 94 (229)
T 3e6j_A 23 TVDCRS-KRHASVPAGI--PTNAQILYLHDNQITKLEP----GVF-DSLINLKELYLGSNQLGALPVGVFDSLTQLTVLD 94 (229)
T ss_dssp EEECTT-SCCSSCCSCC--CTTCSEEECCSSCCCCCCT----TTT-TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred EeEccC-CCcCccCCCC--CCCCCEEEcCCCccCccCH----HHh-hCccCCcEEECCCCCCCCcChhhcccCCCcCEEE
Confidence 445544 3466666543 3777888888866655210 011 4567788888888887777654 56777788 88
Q ss_pred ecccccCCccccccccCCccCEEecCCCCCCCCcchhhhcCCCCceEeccCCcceecCh-hhhcCCCcceEE
Q 038441 85 LKDWQYLESLPSTINGLKSFKILNLSSCSKLENVPENLGKVESLEELDISRTAIRQLPT-SIFLLKNLKAVD 155 (169)
Q Consensus 85 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~ 155 (169)
+++|......+..+..+++|++|++++ +.+..+|..+.++++|++|++++|.++.++. .+..+++|+.|+
T Consensus 95 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~-N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 165 (229)
T 3e6j_A 95 LGTNQLTVLPSAVFDRLVHLKELFMCC-NKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAY 165 (229)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcCCccChhHhCcchhhCeEeccC-CcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEE
Confidence 887743333233456777888888877 5666777777777888888888888877664 466777777777
No 40
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.72 E-value=1.1e-16 Score=113.68 Aligned_cols=152 Identities=22% Similarity=0.318 Sum_probs=119.5
Q ss_pred CcEEeeCCccccccCchhhcCCCCccEEEecCCCCCCCCCCCCccccccCCCCccEEEeeCCcCcccccc-cccccceE-
Q 038441 5 PSTLNLFGLLKFRLFPEIMGRMEHLLVLRLLGTAIRGLPICLKLEKFSKSMKSLTMLILDGTTIRELPLS-VELLTGLL- 82 (169)
Q Consensus 5 l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~lp~~-~~~~~~L~- 82 (169)
.++++.++ ..++.+|..+. +.++.|++++|.+++++. ..+ ..+++|++|++++|.++.+++. +..+++|+
T Consensus 16 ~~~l~~~~-~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~----~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 87 (251)
T 3m19_A 16 KKEVDCQG-KSLDSVPSGIP--ADTEKLDLQSTGLATLSD----ATF-RGLTKLTWLNLDYNQLQTLSAGVFDDLTELGT 87 (251)
T ss_dssp GTEEECTT-CCCSSCCSCCC--TTCCEEECTTSCCCCCCT----TTT-TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred CeEEecCC-CCccccCCCCC--CCCCEEEccCCCcCccCH----hHh-cCcccCCEEECCCCcCCccCHhHhccCCcCCE
Confidence 46788877 45778887553 689999999977766321 111 6678999999999999977654 78899999
Q ss_pred EEecccccCCccccccccCCccCEEecCCCCCCCCcch-hhhcCCCCceEeccCCcceecCh-hhhcCCCcceEEccccc
Q 038441 83 LNLKDWQYLESLPSTINGLKSFKILNLSSCSKLENVPE-NLGKVESLEELDISRTAIRQLPT-SIFLLKNLKAVDHYHLH 160 (169)
Q Consensus 83 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~~~~l~ 160 (169)
+++++|......+..+..+++|++|++++ +.+..++. .+.++++|++|++++|.++.+|. .+..+++|++|+ ++
T Consensus 88 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~---L~ 163 (251)
T 3m19_A 88 LGLANNQLASLPLGVFDHLTQLDKLYLGG-NQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLS---LS 163 (251)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE---CC
T ss_pred EECCCCcccccChhHhcccCCCCEEEcCC-CcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEE---CC
Confidence 99999855544445678899999999998 56666665 46889999999999999998877 688999999999 55
Q ss_pred ccccccCC
Q 038441 161 HGICASLP 168 (169)
Q Consensus 161 ~~~~~~l~ 168 (169)
.+.+..+|
T Consensus 164 ~N~l~~~~ 171 (251)
T 3m19_A 164 TNQLQSVP 171 (251)
T ss_dssp SSCCSCCC
T ss_pred CCcCCccC
Confidence 56655554
No 41
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.72 E-value=1.2e-16 Score=111.58 Aligned_cols=149 Identities=19% Similarity=0.200 Sum_probs=103.6
Q ss_pred cEEeeCCccccccCchhhcCCCCccEEEecCCCCCCCCCCCCccccccCCCCccEEEeeCCcCccccc-ccccccceE-E
Q 038441 6 STLNLFGLLKFRLFPEIMGRMEHLLVLRLLGTAIRGLPICLKLEKFSKSMKSLTMLILDGTTIRELPL-SVELLTGLL-L 83 (169)
Q Consensus 6 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~lp~-~~~~~~~L~-l 83 (169)
+.++++++ .++.+|..+ .+.+++|++++|.++.++.. ..+ ..+++|++|++++|.++.+++ .+..+++|+ +
T Consensus 14 ~~l~~s~n-~l~~iP~~~--~~~~~~L~L~~N~l~~~~~~---~~~-~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L 86 (220)
T 2v70_A 14 TTVDCSNQ-KLNKIPEHI--PQYTAELRLNNNEFTVLEAT---GIF-KKLPQLRKINFSNNKITDIEEGAFEGASGVNEI 86 (220)
T ss_dssp TEEECCSS-CCSSCCSCC--CTTCSEEECCSSCCCEECCC---CCG-GGCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CEeEeCCC-CcccCccCC--CCCCCEEEcCCCcCCccCch---hhh-ccCCCCCEEECCCCcCCEECHHHhCCCCCCCEE
Confidence 45677663 466777644 34567888888666542100 001 467788888888888887765 578888888 8
Q ss_pred EecccccCCccccccccCCccCEEecCCCCCCCCcchhhhcCCCCceEeccCCcceec-ChhhhcCCCcceEEccccccc
Q 038441 84 NLKDWQYLESLPSTINGLKSFKILNLSSCSKLENVPENLGKVESLEELDISRTAIRQL-PTSIFLLKNLKAVDHYHLHHG 162 (169)
Q Consensus 84 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~l~~L~~L~~~~l~~~ 162 (169)
++++|......+..+..+++|++|++++|......|..+.++++|++|++++|.++.+ |..+..+++|+.|+ +++|
T Consensus 87 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~---L~~N 163 (220)
T 2v70_A 87 LLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLN---LLAN 163 (220)
T ss_dssp ECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEE---CCSC
T ss_pred ECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEE---ecCc
Confidence 8888755444445677888888888888433333366788888888888888888866 56778888888888 4445
Q ss_pred cc
Q 038441 163 IC 164 (169)
Q Consensus 163 ~~ 164 (169)
.|
T Consensus 164 ~l 165 (220)
T 2v70_A 164 PF 165 (220)
T ss_dssp CE
T ss_pred CC
Confidence 44
No 42
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.72 E-value=2.6e-17 Score=120.49 Aligned_cols=161 Identities=19% Similarity=0.173 Sum_probs=107.6
Q ss_pred CCCCcEEeeCCccccccCchhh--cCCCCccEEEecCCCCCCCCCCCCccccc-cCCCCccEEEeeCCcCcccc-ccccc
Q 038441 2 LKFPSTLNLFGLLKFRLFPEIM--GRMEHLLVLRLLGTAIRGLPICLKLEKFS-KSMKSLTMLILDGTTIRELP-LSVEL 77 (169)
Q Consensus 2 l~~l~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~l~~~~-~~~~~L~~L~l~~~~~~~lp-~~~~~ 77 (169)
++.|++|++++|.....+|..+ ..+++|++|++++|.+++.+ ..+..++ ...++|++|++++|.++.++ ..++.
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRD--AWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSS--SHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchh--HHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 6789999999977555777765 78999999999998877632 1122221 12377888888888888665 45778
Q ss_pred ccceE-EEecccccCCc--ccccc--ccCCccCEEecCCCCCCCCcch----hhhcCCCCceEeccCCcceecC--hhhh
Q 038441 78 LTGLL-LNLKDWQYLES--LPSTI--NGLKSFKILNLSSCSKLENVPE----NLGKVESLEELDISRTAIRQLP--TSIF 146 (169)
Q Consensus 78 ~~~L~-l~l~~~~~~~~--~~~~~--~~~~~L~~L~l~~~~~~~~~~~----~~~~l~~L~~L~l~~n~l~~~~--~~~~ 146 (169)
+++|+ +++++|+..+. .+..+ ..+++|++|++++ +.+..++. .+.++++|++|++++|.++..+ ..+.
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 250 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRN-AGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD 250 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTT-SCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCC
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCC-CcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhh
Confidence 88888 88888754433 23333 6777888888887 44553322 2346677788888887777543 2445
Q ss_pred cCCCcceEEcccccccccccCC
Q 038441 147 LLKNLKAVDHYHLHHGICASLP 168 (169)
Q Consensus 147 ~l~~L~~L~~~~l~~~~~~~l~ 168 (169)
.+++|++|+ ++.+.+.++|
T Consensus 251 ~l~~L~~L~---Ls~N~l~~ip 269 (312)
T 1wwl_A 251 WPSQLNSLN---LSFTGLKQVP 269 (312)
T ss_dssp CCTTCCEEE---CTTSCCSSCC
T ss_pred hcCCCCEEE---CCCCccChhh
Confidence 567777777 5556665554
No 43
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.72 E-value=1.7e-17 Score=135.62 Aligned_cols=97 Identities=18% Similarity=0.292 Sum_probs=52.7
Q ss_pred CCccEEEeeCCcCccccc--ccccccceE-EEecccccCCccccccccCCccCEEecCCCCCCCCcchhhhcCCC-CceE
Q 038441 56 KSLTMLILDGTTIRELPL--SVELLTGLL-LNLKDWQYLESLPSTINGLKSFKILNLSSCSKLENVPENLGKVES-LEEL 131 (169)
Q Consensus 56 ~~L~~L~l~~~~~~~lp~--~~~~~~~L~-l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L 131 (169)
++|+.|++++|.++.+|. .++.+++|+ +++++|... .+| .+..+++|++|++++ +.+..+|..+.++++ |+.|
T Consensus 548 ~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~-N~l~~lp~~l~~l~~~L~~L 624 (876)
T 4ecn_A 548 PKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDY-NQIEEIPEDFCAFTDQVEGL 624 (876)
T ss_dssp TTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCS-SCCSCCCTTSCEECTTCCEE
T ss_pred CCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcC-CccccchHHHhhccccCCEE
Confidence 355566666655555555 555555566 666555332 444 455555566666655 333355555555555 6666
Q ss_pred eccCCcceecChhhhcCCC--cceEE
Q 038441 132 DISRTAIRQLPTSIFLLKN--LKAVD 155 (169)
Q Consensus 132 ~l~~n~l~~~~~~~~~l~~--L~~L~ 155 (169)
++++|.++.+|..+..+.. |+.|+
T Consensus 625 ~Ls~N~L~~lp~~~~~~~~~~L~~L~ 650 (876)
T 4ecn_A 625 GFSHNKLKYIPNIFNAKSVYVMGSVD 650 (876)
T ss_dssp ECCSSCCCSCCSCCCTTCSSCEEEEE
T ss_pred ECcCCCCCcCchhhhccccCCCCEEE
Confidence 6666665555554433322 55555
No 44
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.72 E-value=1.2e-16 Score=126.31 Aligned_cols=105 Identities=17% Similarity=0.219 Sum_probs=70.2
Q ss_pred ccEEEeeCCcCcccccccccccceE-EEecccccCCccccccccCCccCEEecCCCCCCCCcchhhhcCCCCceEeccCC
Q 038441 58 LTMLILDGTTIRELPLSVELLTGLL-LNLKDWQYLESLPSTINGLKSFKILNLSSCSKLENVPENLGKVESLEELDISRT 136 (169)
Q Consensus 58 L~~L~l~~~~~~~lp~~~~~~~~L~-l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n 136 (169)
|+.|++++|.++.. +.+..+++|+ +++++|......|..+..+++|++|++++ +.+..+|..+..+++|+.|++++|
T Consensus 234 L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~l~~L~~L~Ls~N 311 (597)
T 3oja_B 234 LTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN-NRLVALNLYGQPIPTLKVLDLSHN 311 (597)
T ss_dssp CCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTT-SCCCEEECSSSCCTTCCEEECCSS
T ss_pred CCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCC-CCCCCCCcccccCCCCcEEECCCC
Confidence 44444444444432 3456677777 77877755555566777778888888877 456666666667778888888888
Q ss_pred cceecChhhhcCCCcceEEcccccccccccC
Q 038441 137 AIRQLPTSIFLLKNLKAVDHYHLHHGICASL 167 (169)
Q Consensus 137 ~l~~~~~~~~~l~~L~~L~~~~l~~~~~~~l 167 (169)
.++.+|..+..+++|+.|+ ++.+.+..+
T Consensus 312 ~l~~i~~~~~~l~~L~~L~---L~~N~l~~~ 339 (597)
T 3oja_B 312 HLLHVERNQPQFDRLENLY---LDHNSIVTL 339 (597)
T ss_dssp CCCCCGGGHHHHTTCSEEE---CCSSCCCCC
T ss_pred CCCccCcccccCCCCCEEE---CCCCCCCCc
Confidence 8887777777777788877 444444443
No 45
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.72 E-value=1.2e-16 Score=114.44 Aligned_cols=145 Identities=23% Similarity=0.274 Sum_probs=111.1
Q ss_pred CCCCcEEeeCCccccccCchhhcCCCCccEEEecCCCCCCCCCCCCccccccCCCCccEEEeeCCcCcccccccccccce
Q 038441 2 LKFPSTLNLFGLLKFRLFPEIMGRMEHLLVLRLLGTAIRGLPICLKLEKFSKSMKSLTMLILDGTTIRELPLSVELLTGL 81 (169)
Q Consensus 2 l~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~lp~~~~~~~~L 81 (169)
++.|++|++++| .++.++ .+..+++|++|++++|.+++++. + ..+++|++|++++|.++.+|.... ++|
T Consensus 40 l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~------l-~~l~~L~~L~L~~N~l~~l~~~~~--~~L 108 (263)
T 1xeu_A 40 LSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHNQISDLSP------L-KDLTKLEELSVNRNRLKNLNGIPS--ACL 108 (263)
T ss_dssp HTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSSCCCCCGG------G-TTCSSCCEEECCSSCCSCCTTCCC--SSC
T ss_pred cCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCCccCCChh------h-ccCCCCCEEECCCCccCCcCcccc--Ccc
Confidence 467889999986 467777 57889999999999977665321 1 667889999999999888766433 788
Q ss_pred E-EEecccccCCccccccccCCccCEEecCCCCCCCCcchhhhcCCCCceEeccCCcceecChhhhcCCCcceEEccccc
Q 038441 82 L-LNLKDWQYLESLPSTINGLKSFKILNLSSCSKLENVPENLGKVESLEELDISRTAIRQLPTSIFLLKNLKAVDHYHLH 160 (169)
Q Consensus 82 ~-l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~~~~l~ 160 (169)
+ +++++|. +..++ .+..+++|++|++++ +.+..++ .+..+++|++|++++|.++.+ ..+..+++|+.|+ ++
T Consensus 109 ~~L~L~~N~-l~~~~-~l~~l~~L~~L~Ls~-N~i~~~~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~---l~ 180 (263)
T 1xeu_A 109 SRLFLDNNE-LRDTD-SLIHLKNLEILSIRN-NKLKSIV-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWID---LT 180 (263)
T ss_dssp CEEECCSSC-CSBSG-GGTTCTTCCEEECTT-SCCCBCG-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEE---EE
T ss_pred cEEEccCCc-cCCCh-hhcCcccccEEECCC-CcCCCCh-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEe---CC
Confidence 8 9999874 44444 577889999999988 5666665 688889999999999999877 5677888888888 44
Q ss_pred ccccc
Q 038441 161 HGICA 165 (169)
Q Consensus 161 ~~~~~ 165 (169)
++.+.
T Consensus 181 ~N~~~ 185 (263)
T 1xeu_A 181 GQKCV 185 (263)
T ss_dssp EEEEE
T ss_pred CCccc
Confidence 44443
No 46
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.72 E-value=2.2e-17 Score=122.68 Aligned_cols=146 Identities=22% Similarity=0.294 Sum_probs=71.3
Q ss_pred CCCcEEeeCCccccccCch-hhcCCCCccEEEecCCCCCCCCCCCCccccccCCCCccEEEeeCCcCcccccc-cccccc
Q 038441 3 KFPSTLNLFGLLKFRLFPE-IMGRMEHLLVLRLLGTAIRGLPICLKLEKFSKSMKSLTMLILDGTTIRELPLS-VELLTG 80 (169)
Q Consensus 3 ~~l~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~lp~~-~~~~~~ 80 (169)
+.+++|++++|. ++.++. .+..+++|++|++++|.+++++. ..+ ..+++|++|++++|.++.+|+. ++.+++
T Consensus 52 ~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 125 (353)
T 2z80_A 52 EAVKSLDLSNNR-ITYISNSDLQRCVNLQALVLTSNGINTIEE----DSF-SSLGSLEHLDLSYNYLSNLSSSWFKPLSS 125 (353)
T ss_dssp TTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSCCCEECT----TTT-TTCTTCCEEECCSSCCSSCCHHHHTTCTT
T ss_pred ccCcEEECCCCc-CcccCHHHhccCCCCCEEECCCCccCccCH----hhc-CCCCCCCEEECCCCcCCcCCHhHhCCCcc
Confidence 356777777754 444443 56677777777777755543210 000 3344555555555555554443 444555
Q ss_pred eE-EEecccccCCcccc--ccccCCccCEEecCCCCCCCCcc-hhhhcCCCCceEeccCCcceec-ChhhhcCCCcceEE
Q 038441 81 LL-LNLKDWQYLESLPS--TINGLKSFKILNLSSCSKLENVP-ENLGKVESLEELDISRTAIRQL-PTSIFLLKNLKAVD 155 (169)
Q Consensus 81 L~-l~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~-~~~~~~l~~L~~L~ 155 (169)
|+ +++++| .+..++. .+..+++|++|++++|+.+..++ ..+.++++|++|++++|.+..+ |..+..+++|++|+
T Consensus 126 L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 204 (353)
T 2z80_A 126 LTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLI 204 (353)
T ss_dssp CSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEE
T ss_pred CCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeec
Confidence 55 555554 2223332 34445555555555433333332 2344445555555555544432 33444444444444
No 47
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.72 E-value=2.8e-17 Score=129.75 Aligned_cols=101 Identities=22% Similarity=0.227 Sum_probs=48.0
Q ss_pred CCCccEEEeeCCcCcc--cccccccccceE-EEecccccCCccccccccCCccCEEecCCCCCCCCcchhhhcCCCCceE
Q 038441 55 MKSLTMLILDGTTIRE--LPLSVELLTGLL-LNLKDWQYLESLPSTINGLKSFKILNLSSCSKLENVPENLGKVESLEEL 131 (169)
Q Consensus 55 ~~~L~~L~l~~~~~~~--lp~~~~~~~~L~-l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 131 (169)
+++|++|++++|.++. +|..++.+++|+ +++++|......|..+..+++|++|++++|...+..|..+.++++|++|
T Consensus 447 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 526 (606)
T 3vq2_A 447 LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTL 526 (606)
T ss_dssp CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEE
T ss_pred CCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEE
Confidence 3444555555554442 333444455555 5555543333333444455555555555532223334445555555555
Q ss_pred eccCCcceecChhhhcCC-CcceEE
Q 038441 132 DISRTAIRQLPTSIFLLK-NLKAVD 155 (169)
Q Consensus 132 ~l~~n~l~~~~~~~~~l~-~L~~L~ 155 (169)
++++|.++.+|..+..++ +|+.++
T Consensus 527 ~l~~N~l~~~p~~~~~l~~~L~~l~ 551 (606)
T 3vq2_A 527 DCSFNRIETSKGILQHFPKSLAFFN 551 (606)
T ss_dssp ECTTSCCCCEESCGGGSCTTCCEEE
T ss_pred ECCCCcCcccCHhHhhhcccCcEEE
Confidence 555555555554444443 355555
No 48
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.71 E-value=7e-17 Score=127.47 Aligned_cols=159 Identities=16% Similarity=0.140 Sum_probs=127.6
Q ss_pred CCCCcEEeeCCccccccCchhhcCCCCccEEEecCCCCCCCCCCCCccccccCCCCccEEEeeCCcCcc-cccccccccc
Q 038441 2 LKFPSTLNLFGLLKFRLFPEIMGRMEHLLVLRLLGTAIRGLPICLKLEKFSKSMKSLTMLILDGTTIRE-LPLSVELLTG 80 (169)
Q Consensus 2 l~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~-lp~~~~~~~~ 80 (169)
++.|++|++++|. +..+|..+..+++|++|++++|.+.+.+. ...+ ..+++|++|++++|.++. .|..+..+++
T Consensus 375 ~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 449 (606)
T 3vq2_A 375 TNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTE---FSAF-LSLEKLLYLDISYTNTKIDFDGIFLGLTS 449 (606)
T ss_dssp CSCCCEEECCSCS-EEEECCCCTTCTTCCEEECTTSEEESTTT---TTTT-TTCTTCCEEECTTSCCEECCTTTTTTCTT
T ss_pred CCcccEeECCCCc-cccchhhccCCCCCCeeECCCCccCCccC---hhhh-hccccCCEEECcCCCCCccchhhhcCCCC
Confidence 5789999999975 66677778899999999999977665211 0111 567899999999999885 5667889999
Q ss_pred eE-EEecccccCCc-cccccccCCccCEEecCCCCCCCCcchhhhcCCCCceEeccCCcceec-ChhhhcCCCcceEEcc
Q 038441 81 LL-LNLKDWQYLES-LPSTINGLKSFKILNLSSCSKLENVPENLGKVESLEELDISRTAIRQL-PTSIFLLKNLKAVDHY 157 (169)
Q Consensus 81 L~-l~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~l~~L~~L~~~ 157 (169)
|+ +++++|..... .|..+..+++|++|++++|...+..|..+.++++|++|++++|+++.+ |..+..+++|+.|+
T Consensus 450 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~-- 527 (606)
T 3vq2_A 450 LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLD-- 527 (606)
T ss_dssp CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEE--
T ss_pred CCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEE--
Confidence 99 99999866653 677888999999999999654455567789999999999999999965 77889999999999
Q ss_pred cccccccccCC
Q 038441 158 HLHHGICASLP 168 (169)
Q Consensus 158 ~l~~~~~~~l~ 168 (169)
++.+.+..+|
T Consensus 528 -l~~N~l~~~p 537 (606)
T 3vq2_A 528 -CSFNRIETSK 537 (606)
T ss_dssp -CTTSCCCCEE
T ss_pred -CCCCcCcccC
Confidence 5556665544
No 49
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.71 E-value=1.6e-16 Score=110.90 Aligned_cols=145 Identities=21% Similarity=0.319 Sum_probs=92.2
Q ss_pred EEeeCCccccccCchhhcCCCCccEEEecCCCCCCCCCCCCccccccCCCCccEEEeeCCcCccc-ccccccccceE-EE
Q 038441 7 TLNLFGLLKFRLFPEIMGRMEHLLVLRLLGTAIRGLPICLKLEKFSKSMKSLTMLILDGTTIREL-PLSVELLTGLL-LN 84 (169)
Q Consensus 7 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l-p~~~~~~~~L~-l~ 84 (169)
.++.++ +.++.+|..+ .+++++|++++|.++.++. ..+ ..+++|++|++++|.++.+ |..+..+++|+ ++
T Consensus 15 ~v~c~~-~~l~~iP~~l--~~~l~~L~l~~n~i~~i~~----~~~-~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~ 86 (220)
T 2v9t_B 15 IVDCRG-KGLTEIPTNL--PETITEIRLEQNTIKVIPP----GAF-SPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLV 86 (220)
T ss_dssp EEECTT-SCCSSCCSSC--CTTCCEEECCSSCCCEECT----TSS-TTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEE
T ss_pred EEEcCC-CCcCcCCCcc--CcCCCEEECCCCcCCCcCH----hHh-hCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEE
Confidence 345544 3466666544 2577788888755443110 011 4566778888888877765 45577777788 88
Q ss_pred ecccccCCcccc-ccccCCccCEEecCCCCCCCCc-chhhhcCCCCceEeccCCcceecCh-hhhcCCCcceEEcccccc
Q 038441 85 LKDWQYLESLPS-TINGLKSFKILNLSSCSKLENV-PENLGKVESLEELDISRTAIRQLPT-SIFLLKNLKAVDHYHLHH 161 (169)
Q Consensus 85 l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~~~~l~~ 161 (169)
+++| .+..+|. .+..+++|++|++++| .+..+ +..+.++++|++|++++|.++.++. .+..+++|+.|+ +.+
T Consensus 87 Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~---L~~ 161 (220)
T 2v9t_B 87 LYGN-KITELPKSLFEGLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMH---LAQ 161 (220)
T ss_dssp CCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE---CCS
T ss_pred CCCC-cCCccCHhHccCCCCCCEEECCCC-CCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEE---eCC
Confidence 8776 3444544 4566777888888774 44443 5567777788888888888776665 466777777777 444
Q ss_pred ccc
Q 038441 162 GIC 164 (169)
Q Consensus 162 ~~~ 164 (169)
|.|
T Consensus 162 N~~ 164 (220)
T 2v9t_B 162 NPF 164 (220)
T ss_dssp SCE
T ss_pred CCc
Confidence 443
No 50
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.71 E-value=7.1e-17 Score=124.22 Aligned_cols=148 Identities=19% Similarity=0.229 Sum_probs=78.7
Q ss_pred CCCcEEeeCCccccccCchhhcCCCCccEEEecCCCCCCCCCCCCccccccCCCCccEEEeeCCcCcccccc-cccccce
Q 038441 3 KFPSTLNLFGLLKFRLFPEIMGRMEHLLVLRLLGTAIRGLPICLKLEKFSKSMKSLTMLILDGTTIRELPLS-VELLTGL 81 (169)
Q Consensus 3 ~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~lp~~-~~~~~~L 81 (169)
..++.|+++++..-...+..+..+++|++|++++|.++++.. ..+ ..+++|++|++++|.++.+|.. +..+++|
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~----~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 106 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEP----GAF-NNLFNLRTLGLRSNRLKLIPLGVFTGLSNL 106 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECT----TTT-TTCTTCCEEECCSSCCCSCCTTSSTTCTTC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeCh----hhh-hCCccCCEEECCCCcCCccCcccccCCCCC
Confidence 356677777754333334556677777777777755443100 001 4455566666666666655543 4555666
Q ss_pred E-EEecccccCCccccccccCCccCEEecCCCCCCCCcchhhhcCCCCceEeccCCcceecCh-hhhcCCCcceEE
Q 038441 82 L-LNLKDWQYLESLPSTINGLKSFKILNLSSCSKLENVPENLGKVESLEELDISRTAIRQLPT-SIFLLKNLKAVD 155 (169)
Q Consensus 82 ~-l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~ 155 (169)
+ +++++|......+..+..+++|++|++++|......+..+.++++|+.|++++|.++.++. .+..+++|+.|+
T Consensus 107 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 182 (477)
T 2id5_A 107 TKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLR 182 (477)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEE
T ss_pred CEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEe
Confidence 6 6666554333334455555666666665532222223345555555555555555555443 344555555555
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.71 E-value=2.8e-17 Score=122.11 Aligned_cols=158 Identities=17% Similarity=0.154 Sum_probs=119.5
Q ss_pred CCCCcEEeeCCccccccCchhhcCCCCccEEEecCCCCCCCCCCCCccccccCCCCccEEEeeCCcCccccc--cccccc
Q 038441 2 LKFPSTLNLFGLLKFRLFPEIMGRMEHLLVLRLLGTAIRGLPICLKLEKFSKSMKSLTMLILDGTTIRELPL--SVELLT 79 (169)
Q Consensus 2 l~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~lp~--~~~~~~ 79 (169)
+++|++|++++|......+..+..+++|++|++++|.+++++. ..+ ..+++|++|++++|.++.+|. .+..++
T Consensus 75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~-~~l~~L~~L~L~~n~l~~l~~~~~~~~l~ 149 (353)
T 2z80_A 75 CVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSS----SWF-KPLSSLTFLNLLGNPYKTLGETSLFSHLT 149 (353)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCH----HHH-TTCTTCSEEECTTCCCSSSCSSCSCTTCT
T ss_pred CCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCH----hHh-CCCccCCEEECCCCCCcccCchhhhccCC
Confidence 5789999999875444345668889999999999966654210 001 567899999999999998877 578899
Q ss_pred ceE-EEecccccCCcc-ccccccCCccCEEecCCCCCCCCcchhhhcCCCCceEeccCCcceecChh-hhcCCCcceEEc
Q 038441 80 GLL-LNLKDWQYLESL-PSTINGLKSFKILNLSSCSKLENVPENLGKVESLEELDISRTAIRQLPTS-IFLLKNLKAVDH 156 (169)
Q Consensus 80 ~L~-l~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~~ 156 (169)
+|+ +++++|+....+ +..+..+++|++|++++|......|..+..+++|++|++++|.+..+|.. +..+++|+.|+
T Consensus 150 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~- 228 (353)
T 2z80_A 150 KLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLE- 228 (353)
T ss_dssp TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEE-
T ss_pred CCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEE-
Confidence 999 999987545554 45778899999999998544444577888999999999999999887774 45688899999
Q ss_pred ccccccccccC
Q 038441 157 YHLHHGICASL 167 (169)
Q Consensus 157 ~~l~~~~~~~l 167 (169)
++++.+..+
T Consensus 229 --L~~n~l~~~ 237 (353)
T 2z80_A 229 --LRDTDLDTF 237 (353)
T ss_dssp --EESCBCTTC
T ss_pred --CCCCccccc
Confidence 555555443
No 52
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.71 E-value=2.2e-16 Score=114.56 Aligned_cols=148 Identities=18% Similarity=0.272 Sum_probs=119.7
Q ss_pred CCCCcEEeeCCccccccCchhhcCCCCccEEEecCCCCCCCCCCCCccccccCCCCccEEEeeCCcCcccccccccccce
Q 038441 2 LKFPSTLNLFGLLKFRLFPEIMGRMEHLLVLRLLGTAIRGLPICLKLEKFSKSMKSLTMLILDGTTIRELPLSVELLTGL 81 (169)
Q Consensus 2 l~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~lp~~~~~~~~L 81 (169)
++.+++|++++|. ++.++. +..+++|++|++++|.+++++ .+ ..+++|++|++++|.++.++. +..+++|
T Consensus 45 l~~L~~L~l~~~~-i~~~~~-~~~l~~L~~L~L~~n~l~~~~------~l-~~l~~L~~L~l~~n~l~~~~~-l~~l~~L 114 (291)
T 1h6t_A 45 LNSIDQIIANNSD-IKSVQG-IQYLPNVTKLFLNGNKLTDIK------PL-ANLKNLGWLFLDENKVKDLSS-LKDLKKL 114 (291)
T ss_dssp HHTCCEEECTTSC-CCCCTT-GGGCTTCCEEECCSSCCCCCG------GG-TTCTTCCEEECCSSCCCCGGG-GTTCTTC
T ss_pred cCcccEEEccCCC-cccChh-HhcCCCCCEEEccCCccCCCc------cc-ccCCCCCEEECCCCcCCCChh-hccCCCC
Confidence 3568999999864 666654 788999999999997776632 11 678899999999999998764 8889999
Q ss_pred E-EEecccccCCccccccccCCccCEEecCCCCCCCCcchhhhcCCCCceEeccCCcceecChhhhcCCCcceEEccccc
Q 038441 82 L-LNLKDWQYLESLPSTINGLKSFKILNLSSCSKLENVPENLGKVESLEELDISRTAIRQLPTSIFLLKNLKAVDHYHLH 160 (169)
Q Consensus 82 ~-l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~~~~l~ 160 (169)
+ +++++|. +..+ +.+..+++|++|++++ +.+..+ ..+..+++|++|++++|.++.++. +..+++|+.|+ ++
T Consensus 115 ~~L~L~~n~-i~~~-~~l~~l~~L~~L~l~~-n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~---L~ 186 (291)
T 1h6t_A 115 KSLSLEHNG-ISDI-NGLVHLPQLESLYLGN-NKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLY---LS 186 (291)
T ss_dssp CEEECTTSC-CCCC-GGGGGCTTCCEEECCS-SCCCCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEE---CC
T ss_pred CEEECCCCc-CCCC-hhhcCCCCCCEEEccC-CcCCcc-hhhccCCCCCEEEccCCccccchh-hcCCCccCEEE---CC
Confidence 9 9999984 4444 4678899999999998 566666 578899999999999999998876 88899999999 55
Q ss_pred ccccccC
Q 038441 161 HGICASL 167 (169)
Q Consensus 161 ~~~~~~l 167 (169)
.+.+..+
T Consensus 187 ~N~i~~l 193 (291)
T 1h6t_A 187 KNHISDL 193 (291)
T ss_dssp SSCCCBC
T ss_pred CCcCCCC
Confidence 5555544
No 53
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.71 E-value=2.4e-16 Score=118.45 Aligned_cols=86 Identities=21% Similarity=0.180 Sum_probs=43.3
Q ss_pred CCCCcEEeeCCccccccCc-hhhcCCCCccEEEecCCCCCCCCC---------------CCCccccc----cCCCCccEE
Q 038441 2 LKFPSTLNLFGLLKFRLFP-EIMGRMEHLLVLRLLGTAIRGLPI---------------CLKLEKFS----KSMKSLTML 61 (169)
Q Consensus 2 l~~l~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~---------------~~~l~~~~----~~~~~L~~L 61 (169)
++.|++|++++|. ++.++ ..+..+++|++|++++|.+++++. .+.++.+| ..+++|++|
T Consensus 68 l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L 146 (390)
T 3o6n_A 68 FRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL 146 (390)
T ss_dssp CCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cccCcEEECCCCc-ccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEE
Confidence 3556666666654 33333 345566666666666655544220 11222233 234555666
Q ss_pred EeeCCcCccccc-ccccccceE-EEeccc
Q 038441 62 ILDGTTIRELPL-SVELLTGLL-LNLKDW 88 (169)
Q Consensus 62 ~l~~~~~~~lp~-~~~~~~~L~-l~l~~~ 88 (169)
++++|.++.+++ .+..+++|+ +++++|
T Consensus 147 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 175 (390)
T 3o6n_A 147 SMSNNNLERIEDDTFQATTSLQNLQLSSN 175 (390)
T ss_dssp ECCSSCCCBCCTTTTSSCTTCCEEECCSS
T ss_pred ECCCCccCccChhhccCCCCCCEEECCCC
Confidence 666655554433 255555555 555554
No 54
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.71 E-value=1.1e-16 Score=112.83 Aligned_cols=142 Identities=19% Similarity=0.310 Sum_probs=105.5
Q ss_pred ccccccCchhhcCCCCccEEEecCCCCCCCCCCCCccccccCCCCccEEEeeCCc-Cccccc-ccccccceE-EEecc-c
Q 038441 13 LLKFRLFPEIMGRMEHLLVLRLLGTAIRGLPICLKLEKFSKSMKSLTMLILDGTT-IRELPL-SVELLTGLL-LNLKD-W 88 (169)
Q Consensus 13 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~lp~-~~~~~~~L~-l~l~~-~ 88 (169)
|..++.+|. + .+++++|++++|.++.++. ..+ ..+++|++|++++|. ++.+++ .+..+++|+ +++++ |
T Consensus 20 c~~l~~ip~-~--~~~l~~L~l~~n~l~~i~~----~~~-~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n 91 (239)
T 2xwt_C 20 CKDIQRIPS-L--PPSTQTLKLIETHLRTIPS----HAF-SNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91 (239)
T ss_dssp ECSCSSCCC-C--CTTCCEEEEESCCCSEECT----TTT-TTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEET
T ss_pred ccCccccCC-C--CCcccEEEEeCCcceEECH----HHc-cCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCC
Confidence 555777886 3 3489999999966654211 011 568899999999996 998876 588899999 99998 6
Q ss_pred ccCCccc-cccccCCccCEEecCCCCCCCCcchhhhcCCCCc---eEeccCC-cceecCh-hhhcCCCcc-eEEcccccc
Q 038441 89 QYLESLP-STINGLKSFKILNLSSCSKLENVPENLGKVESLE---ELDISRT-AIRQLPT-SIFLLKNLK-AVDHYHLHH 161 (169)
Q Consensus 89 ~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~---~L~l~~n-~l~~~~~-~~~~l~~L~-~L~~~~l~~ 161 (169)
.+..++ ..+..+++|++|++++ +.+..+|. +..+.+|+ ++++++| .++.+|. .+..+++|+ .|+ ++.
T Consensus 92 -~l~~i~~~~f~~l~~L~~L~l~~-n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~---l~~ 165 (239)
T 2xwt_C 92 -NLTYIDPDALKELPLLKFLGIFN-TGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLK---LYN 165 (239)
T ss_dssp -TCCEECTTSEECCTTCCEEEEEE-ECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEE---CCS
T ss_pred -CeeEcCHHHhCCCCCCCEEeCCC-CCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEE---cCC
Confidence 455555 5778899999999998 45666776 77777777 8888888 8887765 477788888 888 445
Q ss_pred cccccCC
Q 038441 162 GICASLP 168 (169)
Q Consensus 162 ~~~~~l~ 168 (169)
+.+..+|
T Consensus 166 n~l~~i~ 172 (239)
T 2xwt_C 166 NGFTSVQ 172 (239)
T ss_dssp CCCCEEC
T ss_pred CCCcccC
Confidence 5554443
No 55
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.70 E-value=3.6e-16 Score=119.45 Aligned_cols=107 Identities=27% Similarity=0.263 Sum_probs=61.7
Q ss_pred CccEEEeeCCcCccc-ccccccccceE-EEecccccCCccccccccCCccCEEecCCCCCCCCc-chhhhcCCCCceEec
Q 038441 57 SLTMLILDGTTIREL-PLSVELLTGLL-LNLKDWQYLESLPSTINGLKSFKILNLSSCSKLENV-PENLGKVESLEELDI 133 (169)
Q Consensus 57 ~L~~L~l~~~~~~~l-p~~~~~~~~L~-l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l 133 (169)
+|+.|++++|.++.+ |..+..+++|+ +++++|......+..+..+++|++|++++| .+..+ +..+.++++|++|++
T Consensus 276 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L 354 (455)
T 3v47_A 276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDL 354 (455)
T ss_dssp CCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGGTTCTTCCEEEC
T ss_pred CceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCC-ccCCcChhHhcCcccCCEEEC
Confidence 455555555555533 33456666667 777666444444455666667777777663 33333 455666667777777
Q ss_pred cCCcceec-ChhhhcCCCcceEEcccccccccccC
Q 038441 134 SRTAIRQL-PTSIFLLKNLKAVDHYHLHHGICASL 167 (169)
Q Consensus 134 ~~n~l~~~-~~~~~~l~~L~~L~~~~l~~~~~~~l 167 (169)
++|.++.+ |..+..+++|++|+ ++.+.+..+
T Consensus 355 s~N~l~~~~~~~~~~l~~L~~L~---L~~N~l~~~ 386 (455)
T 3v47_A 355 SYNHIRALGDQSFLGLPNLKELA---LDTNQLKSV 386 (455)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEE---CCSSCCSCC
T ss_pred CCCcccccChhhccccccccEEE---CCCCccccC
Confidence 77766644 44566666677766 444444443
No 56
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.70 E-value=2.2e-16 Score=121.49 Aligned_cols=153 Identities=22% Similarity=0.246 Sum_probs=82.1
Q ss_pred CCCCcEEeeCCccccccCchh-hcCCCCccEEEecCCCCCCCCC-----C----------CCccccc----cCCCCccEE
Q 038441 2 LKFPSTLNLFGLLKFRLFPEI-MGRMEHLLVLRLLGTAIRGLPI-----C----------LKLEKFS----KSMKSLTML 61 (169)
Q Consensus 2 l~~l~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~-----~----------~~l~~~~----~~~~~L~~L 61 (169)
+++|++|++++|. ++.+|.. +..+++|++|++++|.++.+.. + +.+..++ ..+++|+.|
T Consensus 79 l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 157 (477)
T 2id5_A 79 LFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQL 157 (477)
T ss_dssp CTTCCEEECCSSC-CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEE
T ss_pred CccCCEEECCCCc-CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEE
Confidence 4567777777754 5555543 5667777777777766554210 1 1111121 345566666
Q ss_pred EeeCCcCcccccc-cccccceE-EEecccccCCccccccccCCccCEEecCCCCCCCCcch-------------------
Q 038441 62 ILDGTTIRELPLS-VELLTGLL-LNLKDWQYLESLPSTINGLKSFKILNLSSCSKLENVPE------------------- 120 (169)
Q Consensus 62 ~l~~~~~~~lp~~-~~~~~~L~-l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~------------------- 120 (169)
++++|.++.++.. +..+++|+ +++++|......+..+..+++|++|++++|.....++.
T Consensus 158 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 237 (477)
T 2id5_A 158 TLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT 237 (477)
T ss_dssp EEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC
T ss_pred ECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc
Confidence 6666666655543 55566666 66665533332233445555555555555443333333
Q ss_pred -----hhhcCCCCceEeccCCcceecCh-hhhcCCCcceEE
Q 038441 121 -----NLGKVESLEELDISRTAIRQLPT-SIFLLKNLKAVD 155 (169)
Q Consensus 121 -----~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~ 155 (169)
.+.++++|+.|++++|.++.++. .+..+++|+.|+
T Consensus 238 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 278 (477)
T 2id5_A 238 AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQ 278 (477)
T ss_dssp SCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEE
T ss_pred ccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEE
Confidence 34555566666666666554443 445556666666
No 57
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.70 E-value=3.1e-16 Score=123.95 Aligned_cols=87 Identities=21% Similarity=0.154 Sum_probs=45.7
Q ss_pred CCCCcEEeeCCccccccCchhhcCCCCccEEEecCCCCCCCCC---------------CCCccccc----cCCCCccEEE
Q 038441 2 LKFPSTLNLFGLLKFRLFPEIMGRMEHLLVLRLLGTAIRGLPI---------------CLKLEKFS----KSMKSLTMLI 62 (169)
Q Consensus 2 l~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---------------~~~l~~~~----~~~~~L~~L~ 62 (169)
++.|++|++++|......|..+..+++|++|++++|.+++++. .+.++.+| ..+++|++|+
T Consensus 74 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 153 (597)
T 3oja_B 74 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS 153 (597)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEE
Confidence 4567777777654333333456667777777777766655321 11222222 2345555555
Q ss_pred eeCCcCccccc-ccccccceE-EEeccc
Q 038441 63 LDGTTIRELPL-SVELLTGLL-LNLKDW 88 (169)
Q Consensus 63 l~~~~~~~lp~-~~~~~~~L~-l~l~~~ 88 (169)
+++|.++.+++ .++.+++|+ +++++|
T Consensus 154 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 181 (597)
T 3oja_B 154 MSNNNLERIEDDTFQATTSLQNLQLSSN 181 (597)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECTTS
T ss_pred eeCCcCCCCChhhhhcCCcCcEEECcCC
Confidence 55555554433 355555555 555554
No 58
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.70 E-value=3.2e-16 Score=122.97 Aligned_cols=151 Identities=19% Similarity=0.237 Sum_probs=114.8
Q ss_pred CCCCcEEeeCCccccccCchhhcCCCCccEEEecCCCCCCCCCCCCccccc---cCCCCccEEEeeCCcCcc-cccc-cc
Q 038441 2 LKFPSTLNLFGLLKFRLFPEIMGRMEHLLVLRLLGTAIRGLPICLKLEKFS---KSMKSLTMLILDGTTIRE-LPLS-VE 76 (169)
Q Consensus 2 l~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~---~~~~~L~~L~l~~~~~~~-lp~~-~~ 76 (169)
++.|++|++++|......|..+..+++|++|++++|.++++ ..+| ..+++|++|++++|.++. +|.. +.
T Consensus 352 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~------~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 425 (562)
T 3a79_B 352 PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNF------FKVALMTKNMSSLETLDVSLNSLNSHAYDRTCA 425 (562)
T ss_dssp CCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBT------THHHHTTTTCTTCCEEECTTSCCBSCCSSCCCC
T ss_pred CCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCc------ccchhhhcCCCCCCEEECCCCcCCCccChhhhc
Confidence 46778888888765555677777888888888888666542 1222 567888999999998885 7765 67
Q ss_pred cccceE-EEecccccCCccccccccCCccCEEecCCCCCCCCcchhhhcCCCCceEeccCCcceecChh-hhcCCCcceE
Q 038441 77 LLTGLL-LNLKDWQYLESLPSTINGLKSFKILNLSSCSKLENVPENLGKVESLEELDISRTAIRQLPTS-IFLLKNLKAV 154 (169)
Q Consensus 77 ~~~~L~-l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L 154 (169)
.+++|+ +++++|...+..+..+. ++|++|++++ +.+..+|..+.++++|++|++++|.++.+|.. +..+++|+.|
T Consensus 426 ~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~-N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L 502 (562)
T 3a79_B 426 WAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHN-NRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYI 502 (562)
T ss_dssp CCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCS-SCCCCCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCE
T ss_pred CcccCCEEECCCCCCCcchhhhhc--CcCCEEECCC-CcCcccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEE
Confidence 788888 99988865554444332 6899999998 57778888888899999999999999988886 7888899999
Q ss_pred Eccccccccc
Q 038441 155 DHYHLHHGIC 164 (169)
Q Consensus 155 ~~~~l~~~~~ 164 (169)
+ +++|.|
T Consensus 503 ~---l~~N~~ 509 (562)
T 3a79_B 503 W---LHDNPW 509 (562)
T ss_dssp E---CCSCCB
T ss_pred E---ecCCCc
Confidence 8 555544
No 59
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.69 E-value=1.9e-16 Score=118.10 Aligned_cols=138 Identities=21% Similarity=0.232 Sum_probs=61.7
Q ss_pred CcEEeeCCccccccCchh-hc-CCCCccEEEecCCCCCCCCCCCCccccccCCCCccEEEeeCCcCcccccc-cccccce
Q 038441 5 PSTLNLFGLLKFRLFPEI-MG-RMEHLLVLRLLGTAIRGLPICLKLEKFSKSMKSLTMLILDGTTIRELPLS-VELLTGL 81 (169)
Q Consensus 5 l~~L~l~~~~~~~~~~~~-~~-~l~~L~~L~l~~n~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~lp~~-~~~~~~L 81 (169)
++.|+++++. ++.++.. +. .+++|++|++++|.++.++. ..+ ..+++|++|++++|.++.+++. +..+++|
T Consensus 41 l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~----~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 114 (361)
T 2xot_A 41 TALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHNHLNFISS----EAF-VPVPNLRYLDLSSNHLHTLDEFLFSDLQAL 114 (361)
T ss_dssp CSEEECCSSC-CCEECTTSSSSCCTTCCEEECCSSCCCEECT----TTT-TTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred CCEEECCCCC-CCccChhhhhhcccccCEEECCCCcCCccCh----hhc-cCCCCCCEEECCCCcCCcCCHHHhCCCcCC
Confidence 4455555532 3333322 33 45555555555533332100 000 3344555555555555544432 4445555
Q ss_pred E-EEecccccCCccccccccCCccCEEecCCCCCCCCcchhh----hcCCCCceEeccCCcceecCh-hhhcCC
Q 038441 82 L-LNLKDWQYLESLPSTINGLKSFKILNLSSCSKLENVPENL----GKVESLEELDISRTAIRQLPT-SIFLLK 149 (169)
Q Consensus 82 ~-l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----~~l~~L~~L~l~~n~l~~~~~-~~~~l~ 149 (169)
+ +++++|......+..+..+++|++|++++ +.+..+|..+ ..+++|+.|++++|.++.+|. .+..++
T Consensus 115 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~ 187 (361)
T 2xot_A 115 EVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ-NQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLP 187 (361)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSC
T ss_pred CEEECCCCcccEECHHHhCCcccCCEEECCC-CcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhcc
Confidence 5 55555433332334445555555555554 3444444332 345555555555555555443 333443
No 60
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.69 E-value=6.5e-17 Score=118.21 Aligned_cols=152 Identities=18% Similarity=0.117 Sum_probs=78.8
Q ss_pred CCCcEEeeCCccccccCchhhcCCCCccEEEecCCCCCCCCCCCCcc--ccccCCCCccEEEeeCCcCcccccc----cc
Q 038441 3 KFPSTLNLFGLLKFRLFPEIMGRMEHLLVLRLLGTAIRGLPICLKLE--KFSKSMKSLTMLILDGTTIRELPLS----VE 76 (169)
Q Consensus 3 ~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~--~~~~~~~~L~~L~l~~~~~~~lp~~----~~ 76 (169)
+.|++|++++|......+..+..+++|++|++++|.+.+. ..+. .....+++|++|++++|.++.++.. +.
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~---~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~ 221 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGE---RGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAA 221 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHH---HHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHH
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccc---hhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHh
Confidence 4455555555433222233444555555555555433210 0000 0013455666666666666544432 34
Q ss_pred cccceE-EEecccccCCccccccccC---CccCEEecCCCCCCCCcchhhhcCCCCceEeccCCcceecChhhhcCCCcc
Q 038441 77 LLTGLL-LNLKDWQYLESLPSTINGL---KSFKILNLSSCSKLENVPENLGKVESLEELDISRTAIRQLPTSIFLLKNLK 152 (169)
Q Consensus 77 ~~~~L~-l~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~ 152 (169)
.+++|+ +++++|......|..+..+ ++|++|++++ +.+..+|..+. ++|++|++++|+++.+|. +..+++|+
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~-N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~ 297 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSF-AGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVD 297 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCS-SCCCSCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCS
T ss_pred cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCC-CCCCchhhhhc--CCCCEEECCCCcCCCCch-hhhCCCcc
Confidence 556666 6666664444445545444 4666666666 44556665543 566677777776666544 45566666
Q ss_pred eEEccccccccc
Q 038441 153 AVDHYHLHHGIC 164 (169)
Q Consensus 153 ~L~~~~l~~~~~ 164 (169)
.|+ ++.|.|
T Consensus 298 ~L~---L~~N~l 306 (310)
T 4glp_A 298 NLT---LDGNPF 306 (310)
T ss_dssp CEE---CSSTTT
T ss_pred EEE---CcCCCC
Confidence 666 444544
No 61
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.69 E-value=2.4e-16 Score=105.39 Aligned_cols=133 Identities=23% Similarity=0.234 Sum_probs=74.1
Q ss_pred CCCccEEEecCCCCCCCCCCCCccccccCCCCccEEEeeCCcCcccccccccccceE-EEecccccCCccccccccCCcc
Q 038441 26 MEHLLVLRLLGTAIRGLPICLKLEKFSKSMKSLTMLILDGTTIRELPLSVELLTGLL-LNLKDWQYLESLPSTINGLKSF 104 (169)
Q Consensus 26 l~~L~~L~l~~n~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~lp~~~~~~~~L~-l~l~~~~~~~~~~~~~~~~~~L 104 (169)
.+++++|++++|.++. ..+......+++|++|++++|.++.+ ..+..+++|+ +++++|......|..+..+++|
T Consensus 23 ~~~L~~L~l~~n~l~~----~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 97 (168)
T 2ell_A 23 PAAVRELVLDNCKSND----GKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL 97 (168)
T ss_dssp TTSCSEEECCSCBCBT----TBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC
T ss_pred cccCCEEECCCCCCCh----hhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCC
Confidence 4556666666654441 00111113455666666666666655 4556666666 6666664443345444556666
Q ss_pred CEEecCCCCCCCCcc--hhhhcCCCCceEeccCCcceecCh----hhhcCCCcceEEcccccccccccC
Q 038441 105 KILNLSSCSKLENVP--ENLGKVESLEELDISRTAIRQLPT----SIFLLKNLKAVDHYHLHHGICASL 167 (169)
Q Consensus 105 ~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~----~~~~l~~L~~L~~~~l~~~~~~~l 167 (169)
++|++++ +.+..++ ..+..+++|++|++++|.++.+|. .+..+++|+.|+ +.++.+..+
T Consensus 98 ~~L~Ls~-N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~---l~~n~~~~~ 162 (168)
T 2ell_A 98 THLNLSG-NKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLD---GYDREDQEA 162 (168)
T ss_dssp CEEECBS-SSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEET---TEETTSCBC
T ss_pred CEEeccC-CccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEec---CCCCChhhc
Confidence 6666666 3444443 456666666666666666665554 455666666666 444444443
No 62
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.68 E-value=4.2e-16 Score=116.24 Aligned_cols=152 Identities=18% Similarity=0.215 Sum_probs=115.8
Q ss_pred cEEeeCCccccccCchhhcCCCCccEEEecCCCCCCCCCCCCccccccCCCCccEEEeeCCcCccccc-ccccccceE-E
Q 038441 6 STLNLFGLLKFRLFPEIMGRMEHLLVLRLLGTAIRGLPICLKLEKFSKSMKSLTMLILDGTTIRELPL-SVELLTGLL-L 83 (169)
Q Consensus 6 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~lp~-~~~~~~~L~-l 83 (169)
+.++.++ +.++.+|..+ .+.+++|++++|.++.++. ..+...+++|++|++++|.++.+++ .+..+++|+ |
T Consensus 21 ~~l~c~~-~~l~~iP~~~--~~~l~~L~Ls~N~l~~l~~----~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L 93 (361)
T 2xot_A 21 NILSCSK-QQLPNVPQSL--PSYTALLDLSHNNLSRLRA----EWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYL 93 (361)
T ss_dssp TEEECCS-SCCSSCCSSC--CTTCSEEECCSSCCCEECT----TSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CEEEeCC-CCcCccCccC--CCCCCEEECCCCCCCccCh----hhhhhcccccCEEECCCCcCCccChhhccCCCCCCEE
Confidence 4566666 4577788654 3568999999966654211 1111278899999999999998875 488999999 9
Q ss_pred EecccccCCccccccccCCccCEEecCCCCCCCCc-chhhhcCCCCceEeccCCcceecChhh----hcCCCcceEEccc
Q 038441 84 NLKDWQYLESLPSTINGLKSFKILNLSSCSKLENV-PENLGKVESLEELDISRTAIRQLPTSI----FLLKNLKAVDHYH 158 (169)
Q Consensus 84 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~l~~L~~L~~~~ 158 (169)
++++|+.....+..+..+++|++|++++| .+..+ +..+.++++|+.|++++|.++.+|..+ ..+++|+.|+
T Consensus 94 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~--- 169 (361)
T 2xot_A 94 DLSSNHLHTLDEFLFSDLQALEVLLLYNN-HIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLD--- 169 (361)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEE---
T ss_pred ECCCCcCCcCCHHHhCCCcCCCEEECCCC-cccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEE---
Confidence 99998544433456788999999999984 55555 678999999999999999999998754 5789999999
Q ss_pred ccccccccCC
Q 038441 159 LHHGICASLP 168 (169)
Q Consensus 159 l~~~~~~~l~ 168 (169)
++.|.+..+|
T Consensus 170 L~~N~l~~l~ 179 (361)
T 2xot_A 170 LSSNKLKKLP 179 (361)
T ss_dssp CCSSCCCCCC
T ss_pred CCCCCCCccC
Confidence 6677777665
No 63
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.68 E-value=2.2e-16 Score=124.70 Aligned_cols=140 Identities=26% Similarity=0.341 Sum_probs=96.0
Q ss_pred CCcEEeeCCccccccCc-hhhcCCCCccEEEecCCCCCCCCCCCCccccccCCCCccEEEeeCCcCcccccc-cccccce
Q 038441 4 FPSTLNLFGLLKFRLFP-EIMGRMEHLLVLRLLGTAIRGLPICLKLEKFSKSMKSLTMLILDGTTIRELPLS-VELLTGL 81 (169)
Q Consensus 4 ~l~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~lp~~-~~~~~~L 81 (169)
++++|+++++ .++.+| ..|..+++|++|++++|.++.++. ..+ ..+++|++|++++|+++.+|+. +..+++|
T Consensus 53 ~~~~LdLs~N-~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~----~~f-~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L 126 (635)
T 4g8a_A 53 STKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIED----GAY-QSLSHLSTLILTGNPIQSLALGAFSGLSSL 126 (635)
T ss_dssp TCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCCCCEECT----TTT-TTCTTCCEEECTTCCCCEECGGGGTTCTTC
T ss_pred CCCEEEeeCC-CCCCCCHHHHhCCCCCCEEECCCCcCCCcCh----hHh-cCCCCCCEEEccCCcCCCCCHHHhcCCCCC
Confidence 5788888885 466665 457788888888888855543210 001 5677888888888888877764 6778888
Q ss_pred E-EEecccccCCccc-cccccCCccCEEecCCCCCCC--CcchhhhcCCCCceEeccCCcceecCh-hhhcCCCc
Q 038441 82 L-LNLKDWQYLESLP-STINGLKSFKILNLSSCSKLE--NVPENLGKVESLEELDISRTAIRQLPT-SIFLLKNL 151 (169)
Q Consensus 82 ~-l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L 151 (169)
+ +++++|+. ..++ ..++++++|++|++++| .+. ..|..+.+++.|++|++++|.++.++. .+..+.++
T Consensus 127 ~~L~Ls~N~l-~~l~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l 199 (635)
T 4g8a_A 127 QKLVAVETNL-ASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 199 (635)
T ss_dssp CEEECTTSCC-CCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTC
T ss_pred CEEECCCCcC-CCCChhhhhcCcccCeeccccC-ccccCCCchhhccchhhhhhcccCccccccccccccchhhh
Confidence 8 88888744 4444 45778888888888874 433 356677788888888888888876543 45444433
No 64
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.68 E-value=8.3e-17 Score=125.65 Aligned_cols=148 Identities=21% Similarity=0.240 Sum_probs=102.5
Q ss_pred CCCcEEeeCCccccccCchhhcCCCCccEEEecCCCCCCCCCCCCccccccCCCCccEEEeeCCcCcccccc-cccccce
Q 038441 3 KFPSTLNLFGLLKFRLFPEIMGRMEHLLVLRLLGTAIRGLPICLKLEKFSKSMKSLTMLILDGTTIRELPLS-VELLTGL 81 (169)
Q Consensus 3 ~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~lp~~-~~~~~~L 81 (169)
+.+++|++++|......|..+..+++|++|++++|.+++++. ..+ ..+++|++|++++|.++.+++. ++.+++|
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~----~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 100 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEG----DAF-YSLGSLEHLDLSDNHLSSLSSSWFGPLSSL 100 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECT----TTT-TTCTTCCEEECTTSCCCSCCHHHHTTCTTC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccCh----hhc-cccccCCEEECCCCccCccCHHHhccCCCC
Confidence 468889998876434445668888999999999866654210 111 5667788888888888877665 7778888
Q ss_pred E-EEecccccCC-ccccccccCCccCEEecCCCCCCCCcc-hhhhcCCCCceEeccCCccee-cChhhhcCCCcceEE
Q 038441 82 L-LNLKDWQYLE-SLPSTINGLKSFKILNLSSCSKLENVP-ENLGKVESLEELDISRTAIRQ-LPTSIFLLKNLKAVD 155 (169)
Q Consensus 82 ~-l~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~-~~~~~~~l~~L~~L~ 155 (169)
+ +++++|.... ..+..+..+++|++|++++|..++.+| ..+.++++|++|++++|.++. .|..+..+++|++|+
T Consensus 101 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 178 (549)
T 2z81_A 101 KYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLT 178 (549)
T ss_dssp CEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEE
T ss_pred cEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEe
Confidence 8 8888874443 345567778888888888755566665 467778888888888887773 555665555555554
No 65
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.68 E-value=2.6e-16 Score=105.27 Aligned_cols=133 Identities=20% Similarity=0.216 Sum_probs=110.3
Q ss_pred CCCCcEEeeCCccccc--cCchhhcCCCCccEEEecCCCCCCCCCCCCccccccCCCCccEEEeeCCcCcc-cccccccc
Q 038441 2 LKFPSTLNLFGLLKFR--LFPEIMGRMEHLLVLRLLGTAIRGLPICLKLEKFSKSMKSLTMLILDGTTIRE-LPLSVELL 78 (169)
Q Consensus 2 l~~l~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~-lp~~~~~~ 78 (169)
.+.+++|++++|. ++ .+|..+..+++|++|++++|.++++ ..+ ..+++|++|++++|.++. +|..+..+
T Consensus 23 ~~~L~~L~l~~n~-l~~~~i~~~~~~l~~L~~L~l~~n~l~~~------~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l 94 (168)
T 2ell_A 23 PAAVRELVLDNCK-SNDGKIEGLTAEFVNLEFLSLINVGLISV------SNL-PKLPKLKKLELSENRIFGGLDMLAEKL 94 (168)
T ss_dssp TTSCSEEECCSCB-CBTTBCSSCCGGGGGCCEEEEESSCCCCC------SSC-CCCSSCCEEEEESCCCCSCCCHHHHHC
T ss_pred cccCCEEECCCCC-CChhhHHHHHHhCCCCCEEeCcCCCCCCh------hhh-ccCCCCCEEECcCCcCchHHHHHHhhC
Confidence 3679999999976 54 7888788999999999999887662 222 678899999999999997 66667779
Q ss_pred cceE-EEecccccCCccc--cccccCCccCEEecCCCCCCCCcch----hhhcCCCCceEeccCCcceecChh
Q 038441 79 TGLL-LNLKDWQYLESLP--STINGLKSFKILNLSSCSKLENVPE----NLGKVESLEELDISRTAIRQLPTS 144 (169)
Q Consensus 79 ~~L~-l~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~ 144 (169)
++|+ +++++| .+..++ ..+..+++|++|++++ +.+...+. .+..+++|++|++++|.+.++|.+
T Consensus 95 ~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 95 PNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFN-CEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp TTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCS-SGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred CCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeC-CcCcchHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence 9999 999998 455544 6788999999999998 56666665 788999999999999999888764
No 66
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.68 E-value=1.3e-15 Score=112.66 Aligned_cols=137 Identities=20% Similarity=0.299 Sum_probs=63.6
Q ss_pred CCCcEEeeCCccccccCchhhcCCCCccEEEecCCCCCCCCCCCCccccc--cCCCCccEEEeeCCcCcccccccccccc
Q 038441 3 KFPSTLNLFGLLKFRLFPEIMGRMEHLLVLRLLGTAIRGLPICLKLEKFS--KSMKSLTMLILDGTTIRELPLSVELLTG 80 (169)
Q Consensus 3 ~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~--~~~~~L~~L~l~~~~~~~lp~~~~~~~~ 80 (169)
++|++|++++| .++.++. +..+++|++|++++|.++. ++ ..+++|++|++++|.++.++. +..+++
T Consensus 66 ~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~L~~n~i~~---------~~~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~ 133 (347)
T 4fmz_A 66 TNLEYLNLNGN-QITDISP-LSNLVKLTNLYIGTNKITD---------ISALQNLTNLRELYLNEDNISDISP-LANLTK 133 (347)
T ss_dssp TTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCC---------CGGGTTCTTCSEEECTTSCCCCCGG-GTTCTT
T ss_pred CCccEEEccCC-ccccchh-hhcCCcCCEEEccCCcccC---------chHHcCCCcCCEEECcCCcccCchh-hccCCc
Confidence 34444444443 2333333 4444444444444433332 22 445556666666665555544 455555
Q ss_pred eE-EEecccccCCccccccccCCccCEEecCCCCCCCCcchhhhcCCCCceEeccCCcceecChhhhcCCCcceEE
Q 038441 81 LL-LNLKDWQYLESLPSTINGLKSFKILNLSSCSKLENVPENLGKVESLEELDISRTAIRQLPTSIFLLKNLKAVD 155 (169)
Q Consensus 81 L~-l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~ 155 (169)
|+ +++++|......+ .+..+++|++|++++| .+..++. +..+++|+.|++++|.+..++. +..+++|+.++
T Consensus 134 L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~-~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~ 205 (347)
T 4fmz_A 134 MYSLNLGANHNLSDLS-PLSNMTGLNYLTVTES-KVKDVTP-IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFT 205 (347)
T ss_dssp CCEEECTTCTTCCCCG-GGTTCTTCCEEECCSS-CCCCCGG-GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEE
T ss_pred eeEEECCCCCCccccc-chhhCCCCcEEEecCC-CcCCchh-hccCCCCCEEEccCCccccccc-ccCCCccceee
Confidence 55 5555553333222 2445555555555542 2333322 4455555555555555554432 33334444443
No 67
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.68 E-value=1.9e-16 Score=124.03 Aligned_cols=103 Identities=21% Similarity=0.336 Sum_probs=67.2
Q ss_pred cCCCCccEEEeeCCcCcc-cccccccccceE-EEecccccC-CccccccccCCccCEEecCCCCCCCCcchhhhcCCCCc
Q 038441 53 KSMKSLTMLILDGTTIRE-LPLSVELLTGLL-LNLKDWQYL-ESLPSTINGLKSFKILNLSSCSKLENVPENLGKVESLE 129 (169)
Q Consensus 53 ~~~~~L~~L~l~~~~~~~-lp~~~~~~~~L~-l~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 129 (169)
..+++|++|++++|.++. .|..+..+++|+ +++++|... ..+|..+..+++|++|++++|......|..+.++++|+
T Consensus 418 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 497 (570)
T 2z63_A 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 497 (570)
T ss_dssp TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred hcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCC
Confidence 445667777777776664 344566677777 777776444 24566666777777777776433333366677777777
Q ss_pred eEeccCCcceecCh-hhhcCCCcceEE
Q 038441 130 ELDISRTAIRQLPT-SIFLLKNLKAVD 155 (169)
Q Consensus 130 ~L~l~~n~l~~~~~-~~~~l~~L~~L~ 155 (169)
+|++++|+++.++. .+..+++|+.|+
T Consensus 498 ~L~l~~n~l~~~~~~~~~~l~~L~~L~ 524 (570)
T 2z63_A 498 VLNMASNQLKSVPDGIFDRLTSLQKIW 524 (570)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred EEeCCCCcCCCCCHHHhhcccCCcEEE
Confidence 77777777776554 466777777777
No 68
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.68 E-value=1e-15 Score=121.07 Aligned_cols=146 Identities=23% Similarity=0.315 Sum_probs=98.0
Q ss_pred CCCCcEEeeCCccccccCchhhcCCCCccEEEecCCCCCCCCCCCCccccccCCCCccEEEeeCCcCcccccccccccce
Q 038441 2 LKFPSTLNLFGLLKFRLFPEIMGRMEHLLVLRLLGTAIRGLPICLKLEKFSKSMKSLTMLILDGTTIRELPLSVELLTGL 81 (169)
Q Consensus 2 l~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~lp~~~~~~~~L 81 (169)
+++|+.|++++|. +..+++ +..+++|++|++++|.+++++ .+ ..+++|+.|++++|.++.++ .+..+++|
T Consensus 64 l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~l~~l~------~l-~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L 133 (605)
T 1m9s_A 64 LPNVTKLFLNGNK-LTDIKP-LTNLKNLGWLFLDENKIKDLS------SL-KDLKKLKSLSLEHNGISDIN-GLVHLPQL 133 (605)
T ss_dssp CTTCCEEECTTSC-CCCCGG-GGGCTTCCEEECCSSCCCCCT------TS-TTCTTCCEEECTTSCCCCCG-GGGGCTTC
T ss_pred CCCCCEEEeeCCC-CCCChh-hccCCCCCEEECcCCCCCCCh------hh-ccCCCCCEEEecCCCCCCCc-cccCCCcc
Confidence 3456666666543 444443 555666666666665444321 11 56778888888888887763 47778888
Q ss_pred E-EEecccccCCccccccccCCccCEEecCCCCCCCCcchhhhcCCCCceEeccCCcceecChhhhcCCCcceEEccccc
Q 038441 82 L-LNLKDWQYLESLPSTINGLKSFKILNLSSCSKLENVPENLGKVESLEELDISRTAIRQLPTSIFLLKNLKAVDHYHLH 160 (169)
Q Consensus 82 ~-l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~~~~l~ 160 (169)
+ |++++|... .+ ..+..+++|+.|++++| .+..++. +..+++|+.|++++|.++.++ .+..+++|+.|+ +.
T Consensus 134 ~~L~Ls~N~l~-~l-~~l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~---L~ 205 (605)
T 1m9s_A 134 ESLYLGNNKIT-DI-TVLSRLTKLDTLSLEDN-QISDIVP-LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLE---LF 205 (605)
T ss_dssp SEEECCSSCCC-CC-GGGGSCTTCSEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEE---CC
T ss_pred CEEECCCCccC-Cc-hhhcccCCCCEEECcCC-cCCCchh-hccCCCCCEEECcCCCCCCCh-HHccCCCCCEEE---cc
Confidence 8 888887433 33 46778888888888874 5555544 788888888888888888775 577788888888 44
Q ss_pred ccccc
Q 038441 161 HGICA 165 (169)
Q Consensus 161 ~~~~~ 165 (169)
.+.+.
T Consensus 206 ~N~l~ 210 (605)
T 1m9s_A 206 SQECL 210 (605)
T ss_dssp SEEEE
T ss_pred CCcCc
Confidence 44443
No 69
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.67 E-value=8.2e-16 Score=107.91 Aligned_cols=130 Identities=24% Similarity=0.298 Sum_probs=107.2
Q ss_pred CCCcEEeeCCccccccCchhhcCCCCccEEEecCCCCCCCCCCCCccccccCCCCccEEEeeCCcCcccccc-cccccce
Q 038441 3 KFPSTLNLFGLLKFRLFPEIMGRMEHLLVLRLLGTAIRGLPICLKLEKFSKSMKSLTMLILDGTTIRELPLS-VELLTGL 81 (169)
Q Consensus 3 ~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~lp~~-~~~~~~L 81 (169)
.++++|++++|......|..+..+++|++|++++|.++.++. ..+ ..+++|++|++++|.++.+++. +..+++|
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~----~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L 114 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPV----GVF-DSLTQLTVLDLGTNQLTVLPSAVFDRLVHL 114 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT----TTT-TTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcCh----hhc-ccCCCcCEEECCCCcCCccChhHhCcchhh
Confidence 578999999976555456778899999999999977655321 011 5678999999999999988776 6889999
Q ss_pred E-EEecccccCCccccccccCCccCEEecCCCCCCCCcc-hhhhcCCCCceEeccCCcce
Q 038441 82 L-LNLKDWQYLESLPSTINGLKSFKILNLSSCSKLENVP-ENLGKVESLEELDISRTAIR 139 (169)
Q Consensus 82 ~-l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~n~l~ 139 (169)
+ +++++| .+..+|..+..+++|++|++++ |.+..++ ..+..+++|+.+++++|.+.
T Consensus 115 ~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 115 KELFMCCN-KLTELPRGIERLTHLTHLALDQ-NQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CEEECCSS-CCCSCCTTGGGCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CeEeccCC-cccccCcccccCCCCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 9 999998 5668888889999999999998 5666666 45888999999999999887
No 70
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.67 E-value=8.3e-16 Score=121.35 Aligned_cols=100 Identities=18% Similarity=0.248 Sum_probs=44.4
Q ss_pred CCCccEEEeeCCcCccc-ccccccccceE-EEecccccCCc---cccccccCCccCEEecCCCCCCCCcchhhhcCCCCc
Q 038441 55 MKSLTMLILDGTTIREL-PLSVELLTGLL-LNLKDWQYLES---LPSTINGLKSFKILNLSSCSKLENVPENLGKVESLE 129 (169)
Q Consensus 55 ~~~L~~L~l~~~~~~~l-p~~~~~~~~L~-l~l~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 129 (169)
+++|+.|++++|.++.. |..+..+++|+ +++++|...+. .+..+..+++|++|++++|......|..+.++++|+
T Consensus 424 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 503 (606)
T 3t6q_A 424 LHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMN 503 (606)
T ss_dssp CTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred cccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCC
Confidence 34455555555554432 23344455555 55555433221 112344445555555554322222234445555555
Q ss_pred eEeccCCccee-cChhhhcCCCcceEE
Q 038441 130 ELDISRTAIRQ-LPTSIFLLKNLKAVD 155 (169)
Q Consensus 130 ~L~l~~n~l~~-~~~~~~~l~~L~~L~ 155 (169)
+|++++|.++. .|..+..++.| .|+
T Consensus 504 ~L~Ls~N~l~~~~~~~l~~l~~L-~L~ 529 (606)
T 3t6q_A 504 HVDLSHNRLTSSSIEALSHLKGI-YLN 529 (606)
T ss_dssp EEECCSSCCCGGGGGGGTTCCSC-EEE
T ss_pred EEECCCCccCcCChhHhCccccc-EEE
Confidence 55555555542 23344444444 444
No 71
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.67 E-value=3.1e-16 Score=119.86 Aligned_cols=109 Identities=21% Similarity=0.209 Sum_probs=86.8
Q ss_pred cCCCCccEEEeeCCcCccc-ccccccccceE-EEecccccCCccccccccCCccCEEecCCCCCCCCcchhhhcCCCCce
Q 038441 53 KSMKSLTMLILDGTTIREL-PLSVELLTGLL-LNLKDWQYLESLPSTINGLKSFKILNLSSCSKLENVPENLGKVESLEE 130 (169)
Q Consensus 53 ~~~~~L~~L~l~~~~~~~l-p~~~~~~~~L~-l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 130 (169)
..+++|++|++++|.++.+ |..+..+++|+ +++++|......+..+..+++|++|++++|......|..+.++++|++
T Consensus 296 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 375 (455)
T 3v47_A 296 SHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKE 375 (455)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred ccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccE
Confidence 5678899999999999876 44688899999 999998554444667788999999999985443344778889999999
Q ss_pred EeccCCcceecCh-hhhcCCCcceEEccccccccc
Q 038441 131 LDISRTAIRQLPT-SIFLLKNLKAVDHYHLHHGIC 164 (169)
Q Consensus 131 L~l~~n~l~~~~~-~~~~l~~L~~L~~~~l~~~~~ 164 (169)
|++++|.++.+|. .+..+++|+.|+ +++|.|
T Consensus 376 L~L~~N~l~~~~~~~~~~l~~L~~L~---l~~N~l 407 (455)
T 3v47_A 376 LALDTNQLKSVPDGIFDRLTSLQKIW---LHTNPW 407 (455)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEE---CCSSCB
T ss_pred EECCCCccccCCHhHhccCCcccEEE---ccCCCc
Confidence 9999999998876 557889999999 555544
No 72
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.67 E-value=1.3e-15 Score=121.80 Aligned_cols=162 Identities=20% Similarity=0.253 Sum_probs=102.7
Q ss_pred CCCCcEEeeCCccccccCc-hhhcCCCCccEEEecCCCCCCCCC-----CC-------------Cccccc---cCCCCcc
Q 038441 2 LKFPSTLNLFGLLKFRLFP-EIMGRMEHLLVLRLLGTAIRGLPI-----CL-------------KLEKFS---KSMKSLT 59 (169)
Q Consensus 2 l~~l~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~-----~~-------------~l~~~~---~~~~~L~ 59 (169)
+++|++|++++|.....+| ..+..+++|++|++++|.+++++. +. .+...| ..+++|+
T Consensus 404 l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~ 483 (680)
T 1ziw_A 404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLT 483 (680)
T ss_dssp CTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCC
T ss_pred CCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCC
Confidence 4677788887765444454 456677777777777776543211 11 111223 4567788
Q ss_pred EEEeeCCcCcccccc-cccccceE-EEecccccCCcc----c----cccccCCccCEEecCCCCCCCCcch-hhhcCCCC
Q 038441 60 MLILDGTTIRELPLS-VELLTGLL-LNLKDWQYLESL----P----STINGLKSFKILNLSSCSKLENVPE-NLGKVESL 128 (169)
Q Consensus 60 ~L~l~~~~~~~lp~~-~~~~~~L~-l~l~~~~~~~~~----~----~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L 128 (169)
+|++++|.++.+++. +..+++|+ +++++|...... | ..+..+++|++|++++ +.+..+|. .+.++++|
T Consensus 484 ~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~-N~l~~i~~~~~~~l~~L 562 (680)
T 1ziw_A 484 ILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES-NGFDEIPVEVFKDLFEL 562 (680)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTC
T ss_pred EEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCC-CCCCCCCHHHcccccCc
Confidence 888888887776654 67777788 888777433211 1 1256677788888877 45556664 46777778
Q ss_pred ceEeccCCcceecCh-hhhcCCCcceEEcccccccccccC
Q 038441 129 EELDISRTAIRQLPT-SIFLLKNLKAVDHYHLHHGICASL 167 (169)
Q Consensus 129 ~~L~l~~n~l~~~~~-~~~~l~~L~~L~~~~l~~~~~~~l 167 (169)
+.|++++|+++.+|. .+..+++|+.|+ ++.+.+..+
T Consensus 563 ~~L~Ls~N~l~~l~~~~~~~l~~L~~L~---L~~N~l~~~ 599 (680)
T 1ziw_A 563 KIIDLGLNNLNTLPASVFNNQVSLKSLN---LQKNLITSV 599 (680)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEE---CTTSCCCBC
T ss_pred ceeECCCCCCCcCCHhHhCCCCCCCEEE---CCCCcCCcc
Confidence 888888887777766 346677777777 555555444
No 73
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.67 E-value=1.8e-16 Score=115.86 Aligned_cols=150 Identities=18% Similarity=0.108 Sum_probs=78.9
Q ss_pred CCCcEEeeCCccccccCchhh--cCCCCccEEEecCCCCCCCCCCCCccccc-cCCCCccEEEeeCCcCcccc-cccccc
Q 038441 3 KFPSTLNLFGLLKFRLFPEIM--GRMEHLLVLRLLGTAIRGLPICLKLEKFS-KSMKSLTMLILDGTTIRELP-LSVELL 78 (169)
Q Consensus 3 ~~l~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~l~~~~-~~~~~L~~L~l~~~~~~~lp-~~~~~~ 78 (169)
..|++|++++|......|..+ ..+++|++|++++|.+++.. ..+.... ..+++|++|++++|.++.++ ..+..+
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~--~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGR--SWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTT--SSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchh--hhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence 357888888876555666655 67788888888887766410 0011111 34556666666666666543 335566
Q ss_pred cceE-EEecccccCCc--cc--cccccCCccCEEecCCCCCCCCcchh----hhcCCCCceEeccCCcceec-ChhhhcC
Q 038441 79 TGLL-LNLKDWQYLES--LP--STINGLKSFKILNLSSCSKLENVPEN----LGKVESLEELDISRTAIRQL-PTSIFLL 148 (169)
Q Consensus 79 ~~L~-l~l~~~~~~~~--~~--~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~l~~L~~L~l~~n~l~~~-~~~~~~l 148 (169)
++|+ +++++|+..+. ++ ..+..+++|++|++++ +.+..++.. +.++++|++|++++|.++.. |..+..+
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~ 247 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRN-TGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRC 247 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCS-SCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSC
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCC-CCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhc
Confidence 6666 66666543221 11 1123455555555555 233333321 34445555555555555533 4333333
Q ss_pred ---CCcceEE
Q 038441 149 ---KNLKAVD 155 (169)
Q Consensus 149 ---~~L~~L~ 155 (169)
++|++|+
T Consensus 248 ~~~~~L~~L~ 257 (310)
T 4glp_A 248 MWSSALNSLN 257 (310)
T ss_dssp CCCTTCCCEE
T ss_pred cCcCcCCEEE
Confidence 3455555
No 74
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.67 E-value=1.9e-16 Score=115.88 Aligned_cols=156 Identities=17% Similarity=0.139 Sum_probs=76.4
Q ss_pred CCCCcEEeeCCccccccCchhhcCC-----CCccEEEecCCCCCCCCC-----C----------CCcc-c--cc-----c
Q 038441 2 LKFPSTLNLFGLLKFRLFPEIMGRM-----EHLLVLRLLGTAIRGLPI-----C----------LKLE-K--FS-----K 53 (169)
Q Consensus 2 l~~l~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~-----~----------~~l~-~--~~-----~ 53 (169)
+++|++|++++|. ++..|+.+..+ ++|++|++++|.+++++. . +.+. . ++ .
T Consensus 120 l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 198 (312)
T 1wwl_A 120 GPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPL 198 (312)
T ss_dssp SCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTT
T ss_pred CCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhc
Confidence 4566667776644 33345545444 666666666665554220 0 0000 0 00 3
Q ss_pred CCCCccEEEeeCCcCcccc---cc-cccccceE-EEecccccCCccc-cccccCCccCEEecCCCCCCCCcchhhhcCCC
Q 038441 54 SMKSLTMLILDGTTIRELP---LS-VELLTGLL-LNLKDWQYLESLP-STINGLKSFKILNLSSCSKLENVPENLGKVES 127 (169)
Q Consensus 54 ~~~~L~~L~l~~~~~~~lp---~~-~~~~~~L~-l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 127 (169)
.+++|++|++++|.++.++ .. +..+++|+ +++++|......| ..+..+++|++|++++ +.+..+|..+. ++
T Consensus 199 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~-N~l~~ip~~~~--~~ 275 (312)
T 1wwl_A 199 KFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSF-TGLKQVPKGLP--AK 275 (312)
T ss_dssp SCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTT-SCCSSCCSSCC--SE
T ss_pred cCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCC-CccChhhhhcc--CC
Confidence 3455555555555555222 12 23345555 5555553333232 2333455566666655 34445555443 55
Q ss_pred CceEeccCCcceecChhhhcCCCcceEEcccccccccc
Q 038441 128 LEELDISRTAIRQLPTSIFLLKNLKAVDHYHLHHGICA 165 (169)
Q Consensus 128 L~~L~l~~n~l~~~~~~~~~l~~L~~L~~~~l~~~~~~ 165 (169)
|++|++++|+++.+|. +..+++|++|+ ++.|.|.
T Consensus 276 L~~L~Ls~N~l~~~p~-~~~l~~L~~L~---L~~N~l~ 309 (312)
T 1wwl_A 276 LSVLDLSYNRLDRNPS-PDELPQVGNLS---LKGNPFL 309 (312)
T ss_dssp EEEEECCSSCCCSCCC-TTTSCEEEEEE---CTTCTTT
T ss_pred ceEEECCCCCCCCChh-HhhCCCCCEEe---ccCCCCC
Confidence 6666666666665544 55555566665 4444443
No 75
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.67 E-value=8.3e-16 Score=120.35 Aligned_cols=147 Identities=27% Similarity=0.290 Sum_probs=108.6
Q ss_pred CCCcEEeeCCccccccCchhhcCCCCccEEEecCCCCCCCCCCCCccccccCCCCccEEEeeCCcCcccc-cccccccce
Q 038441 3 KFPSTLNLFGLLKFRLFPEIMGRMEHLLVLRLLGTAIRGLPICLKLEKFSKSMKSLTMLILDGTTIRELP-LSVELLTGL 81 (169)
Q Consensus 3 ~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~lp-~~~~~~~~L 81 (169)
+.+++|++++|......+..+..+++|++|++++|.+++++. ..+ ..+++|++|++++|.++.++ ..+..+++|
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~----~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED----GAY-QSLSHLSTLILTGNPIQSLALGAFSGLSSL 102 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECT----TTT-TTCTTCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCc----ccc-cCchhCCEEeCcCCcCCccCHhhhcCcccc
Confidence 467889998865433344568889999999999965544210 011 56788999999999988775 458889999
Q ss_pred E-EEecccccCCcccc-ccccCCccCEEecCCCCCCC-CcchhhhcCCCCceEeccCCcceecC-hhhhcCCCc----ce
Q 038441 82 L-LNLKDWQYLESLPS-TINGLKSFKILNLSSCSKLE-NVPENLGKVESLEELDISRTAIRQLP-TSIFLLKNL----KA 153 (169)
Q Consensus 82 ~-l~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~l~~L----~~ 153 (169)
+ +++++|. ...++. .+..+++|++|++++|.... .+|..++++++|++|++++|.++.++ ..+..+++| ..
T Consensus 103 ~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~ 181 (570)
T 2z63_A 103 QKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181 (570)
T ss_dssp CEEECTTSC-CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCE
T ss_pred ccccccccc-cccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhh
Confidence 9 9999874 444443 57888999999999843333 46888999999999999999988664 466777777 66
Q ss_pred EE
Q 038441 154 VD 155 (169)
Q Consensus 154 L~ 155 (169)
++
T Consensus 182 L~ 183 (570)
T 2z63_A 182 LD 183 (570)
T ss_dssp EE
T ss_pred cc
Confidence 77
No 76
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.67 E-value=6e-16 Score=106.15 Aligned_cols=132 Identities=14% Similarity=0.269 Sum_probs=107.2
Q ss_pred cCCCCccEEEecCCCCCCCCCCCCccccccCCCCccEEEeeCCcCcccccccccccceE-EEecccccCCccccccccCC
Q 038441 24 GRMEHLLVLRLLGTAIRGLPICLKLEKFSKSMKSLTMLILDGTTIRELPLSVELLTGLL-LNLKDWQYLESLPSTINGLK 102 (169)
Q Consensus 24 ~~l~~L~~L~l~~n~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~lp~~~~~~~~L~-l~l~~~~~~~~~~~~~~~~~ 102 (169)
..+++|++|++++|.++.++ . + ..+++|++|++++|.++.++ .+..+++|+ +++++|......+..+..++
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~---~---l-~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 112 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT---G---I-EYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLT 112 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT---T---G-GGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCT
T ss_pred hhcCCccEEeccCCCccChH---H---H-hcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCC
Confidence 56889999999996665431 1 1 66789999999999777664 678899999 99999866665677889999
Q ss_pred ccCEEecCCCCCCCCcchhhhcCCCCceEeccCCc-ceecChhhhcCCCcceEEcccccccccccC
Q 038441 103 SFKILNLSSCSKLENVPENLGKVESLEELDISRTA-IRQLPTSIFLLKNLKAVDHYHLHHGICASL 167 (169)
Q Consensus 103 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~l~~L~~L~~~~l~~~~~~~l 167 (169)
+|++|++++|......+..+..+++|++|++++|. +..+| .+..+++|+.|+ ++.+.+..+
T Consensus 113 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~---l~~n~i~~~ 174 (197)
T 4ezg_A 113 SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLN---IQFDGVHDY 174 (197)
T ss_dssp TCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEE---CTTBCCCCC
T ss_pred CCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEE---CCCCCCcCh
Confidence 99999999965555577889999999999999998 88887 688999999999 555555444
No 77
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.66 E-value=7.8e-16 Score=119.55 Aligned_cols=135 Identities=19% Similarity=0.267 Sum_probs=92.1
Q ss_pred cCCCCccEEEecCCCCCCCCCCCCccccccCCCCccEEEeeCCcCccc---ccccccccceE-EEecccccCCcccc-cc
Q 038441 24 GRMEHLLVLRLLGTAIRGLPICLKLEKFSKSMKSLTMLILDGTTIREL---PLSVELLTGLL-LNLKDWQYLESLPS-TI 98 (169)
Q Consensus 24 ~~l~~L~~L~l~~n~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l---p~~~~~~~~L~-l~l~~~~~~~~~~~-~~ 98 (169)
..+++|++|++++|.+++. ....+ ..+++|++|++++|.++.+ |..++.+++|+ +++++|.....+|. .+
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~----~~~~~-~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~ 395 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDT----VFENC-GHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC 395 (520)
T ss_dssp SSCCCCCEEECCSSCCCTT----TTTTC-CCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSC
T ss_pred hhCCcccEEEeECCccChh----hhhhh-ccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchh
Confidence 3455666666666544431 00111 5567788888888877743 44577778888 88887755444664 35
Q ss_pred ccCCccCEEecCCCCCCCCcchhhhcCCCCceEeccCCcceecChhhhcCCCcceEEcccccccccccCC
Q 038441 99 NGLKSFKILNLSSCSKLENVPENLGKVESLEELDISRTAIRQLPTSIFLLKNLKAVDHYHLHHGICASLP 168 (169)
Q Consensus 99 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~~~~l~~~~~~~l~ 168 (169)
..+++|++|++++|...+..|..+. ++|++|++++|.++.+|..+..+++|++|+ ++.+.+..+|
T Consensus 396 ~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~---L~~N~l~~l~ 460 (520)
T 2z7x_B 396 SWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELN---VASNQLKSVP 460 (520)
T ss_dssp CCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEE---CCSSCCCCCC
T ss_pred ccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEE---CCCCcCCccC
Confidence 6677888888887544445554432 689999999999999998888999999999 6667776665
No 78
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.66 E-value=1.2e-15 Score=106.51 Aligned_cols=130 Identities=21% Similarity=0.321 Sum_probs=104.7
Q ss_pred CCCcEEeeCCccccccCch-hhcCCCCccEEEecCCCCCCCCCCCCccccccCCCCccEEEeeCCcCcccccc-cccccc
Q 038441 3 KFPSTLNLFGLLKFRLFPE-IMGRMEHLLVLRLLGTAIRGLPICLKLEKFSKSMKSLTMLILDGTTIRELPLS-VELLTG 80 (169)
Q Consensus 3 ~~l~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~lp~~-~~~~~~ 80 (169)
+.++.|+++++. ++.+++ .+..+++|++|++++|.++.+. -..+ ..+++|++|++++|.++.+|+. +..+++
T Consensus 32 ~~l~~L~l~~n~-i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~----~~~~-~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~ 105 (220)
T 2v9t_B 32 ETITEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQISELA----PDAF-QGLRSLNSLVLYGNKITELPKSLFEGLFS 105 (220)
T ss_dssp TTCCEEECCSSC-CCEECTTSSTTCTTCCEEECCSSCCCEEC----TTTT-TTCSSCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cCCCEEECCCCc-CCCcCHhHhhCCCCCCEEECCCCcCCCcC----HHHh-hCCcCCCEEECCCCcCCccCHhHccCCCC
Confidence 468999999965 555554 6888999999999997665421 0111 6788999999999999999876 678999
Q ss_pred eE-EEecccccCCccccccccCCccCEEecCCCCCCCCcc-hhhhcCCCCceEeccCCcce
Q 038441 81 LL-LNLKDWQYLESLPSTINGLKSFKILNLSSCSKLENVP-ENLGKVESLEELDISRTAIR 139 (169)
Q Consensus 81 L~-l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~n~l~ 139 (169)
|+ +++++|......+..+..+++|++|++++ +.+..++ ..+..+++|+++++++|.+.
T Consensus 106 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 106 LQLLLLNANKINCLRVDAFQDLHNLNLLSLYD-NKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCEEECCCCCCCEeCHHHcCCCCCCCEEECCC-CcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 99 99999866555567888999999999998 5565555 46888999999999999876
No 79
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.66 E-value=2.7e-15 Score=103.62 Aligned_cols=101 Identities=27% Similarity=0.417 Sum_probs=48.2
Q ss_pred CCCCccEEEeeCCcCcccccc-cccccceE-EEecccccCCccccccccCCccCEEecCCCCCCCCcch-hhhcCCCCce
Q 038441 54 SMKSLTMLILDGTTIRELPLS-VELLTGLL-LNLKDWQYLESLPSTINGLKSFKILNLSSCSKLENVPE-NLGKVESLEE 130 (169)
Q Consensus 54 ~~~~L~~L~l~~~~~~~lp~~-~~~~~~L~-l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~ 130 (169)
.+++|++|++++|.++.+++. +..+++|+ +++++|......+..+..+++|++|++++ +.+..++. .+.++++|++
T Consensus 50 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~ 128 (208)
T 2o6s_A 50 ELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNT-NQLQSLPDGVFDKLTQLKD 128 (208)
T ss_dssp TCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCE
T ss_pred ccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCC-CcCcccCHhHhccCCcCCE
Confidence 344555555555555544443 34455555 55555432222122334555555555554 23333332 2445555555
Q ss_pred EeccCCcceecCh-hhhcCCCcceEE
Q 038441 131 LDISRTAIRQLPT-SIFLLKNLKAVD 155 (169)
Q Consensus 131 L~l~~n~l~~~~~-~~~~l~~L~~L~ 155 (169)
|++++|.++.++. .+..+++|+.|+
T Consensus 129 L~l~~N~l~~~~~~~~~~l~~L~~L~ 154 (208)
T 2o6s_A 129 LRLYQNQLKSVPDGVFDRLTSLQYIW 154 (208)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred EECCCCccceeCHHHhccCCCccEEE
Confidence 5555555554444 244455555555
No 80
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.66 E-value=2.1e-15 Score=111.55 Aligned_cols=148 Identities=21% Similarity=0.226 Sum_probs=74.5
Q ss_pred CCCCcEEeeCCccccccCchhhcCCCCccEEEecCCCCCCCCC-------------CCCccccc--cCCCCccEEEeeCC
Q 038441 2 LKFPSTLNLFGLLKFRLFPEIMGRMEHLLVLRLLGTAIRGLPI-------------CLKLEKFS--KSMKSLTMLILDGT 66 (169)
Q Consensus 2 l~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------------~~~l~~~~--~~~~~L~~L~l~~~ 66 (169)
++.|++|++++|. +..++. +..+++|+++++++|.+++.+. .+.++.++ ..+++|++|++++|
T Consensus 176 l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n 253 (347)
T 4fmz_A 176 LTDLYSLSLNYNQ-IEDISP-LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTN 253 (347)
T ss_dssp CTTCSEEECTTSC-CCCCGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS
T ss_pred CCCCCEEEccCCc-cccccc-ccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCC
Confidence 4677888887764 555554 5667777777777765554210 01111111 33445555555555
Q ss_pred cCcccccccccccceE-EEecccccCCccccccccCCccCEEecCCCCCCCCcchhhhcCCCCceEeccCCcceecChhh
Q 038441 67 TIRELPLSVELLTGLL-LNLKDWQYLESLPSTINGLKSFKILNLSSCSKLENVPENLGKVESLEELDISRTAIRQLPTSI 145 (169)
Q Consensus 67 ~~~~lp~~~~~~~~L~-l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 145 (169)
.++.+ +.+..+++|+ +++++|. +..+ +.+..+++|++|++++|......+..+.++++|++|++++|.++.++. +
T Consensus 254 ~l~~~-~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~ 329 (347)
T 4fmz_A 254 QISDI-NAVKDLTKLKMLNVGSNQ-ISDI-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-L 329 (347)
T ss_dssp CCCCC-GGGTTCTTCCEEECCSSC-CCCC-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-G
T ss_pred ccCCC-hhHhcCCCcCEEEccCCc-cCCC-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-h
Confidence 54443 2344455555 5555542 2222 234445555555555533333333445555555555555555554433 4
Q ss_pred hcCCCcceEE
Q 038441 146 FLLKNLKAVD 155 (169)
Q Consensus 146 ~~l~~L~~L~ 155 (169)
..+++|+.|+
T Consensus 330 ~~l~~L~~L~ 339 (347)
T 4fmz_A 330 ASLSKMDSAD 339 (347)
T ss_dssp GGCTTCSEES
T ss_pred hhhhccceee
Confidence 4555555555
No 81
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.66 E-value=1.3e-15 Score=121.84 Aligned_cols=147 Identities=22% Similarity=0.186 Sum_probs=104.8
Q ss_pred CCCcEEeeCCccccccCc-hhhcCCCCccEEEecCCCCCCCCCCCCccccccCCCCccEEEeeCCcCcccccc-cccccc
Q 038441 3 KFPSTLNLFGLLKFRLFP-EIMGRMEHLLVLRLLGTAIRGLPICLKLEKFSKSMKSLTMLILDGTTIRELPLS-VELLTG 80 (169)
Q Consensus 3 ~~l~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~lp~~-~~~~~~ 80 (169)
+.+++|++++|. ++.++ ..+..+++|++|++++|.+++++. ..+ ..+++|++|++++|.++.+|+. ++.+++
T Consensus 25 ~~l~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~-~~l~~L~~L~L~~n~l~~l~~~~~~~l~~ 98 (680)
T 1ziw_A 25 TNITVLNLTHNQ-LRRLPAANFTRYSQLTSLDVGFNTISKLEP----ELC-QKLPMLKVLNLQHNELSQLSDKTFAFCTN 98 (680)
T ss_dssp TTCSEEECCSSC-CCCCCGGGGGGGTTCSEEECCSSCCCCCCT----THH-HHCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCcEEECCCCC-CCCcCHHHHhCCCcCcEEECCCCccCccCH----HHH-hcccCcCEEECCCCccCccChhhhccCCC
Confidence 468889998865 44454 458889999999999976665210 011 5677888888888888887764 778888
Q ss_pred eE-EEecccccCCccccccccCCccCEEecCCCCCCCCcchhhhcCCCCceEeccCCcceecCh-hhh--cCCCcceEE
Q 038441 81 LL-LNLKDWQYLESLPSTINGLKSFKILNLSSCSKLENVPENLGKVESLEELDISRTAIRQLPT-SIF--LLKNLKAVD 155 (169)
Q Consensus 81 L~-l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~--~l~~L~~L~ 155 (169)
|+ +++++|......+..+..+++|++|++++|......+..+.++++|++|++++|.++.++. .+. .+++|+.|+
T Consensus 99 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 177 (680)
T 1ziw_A 99 LTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLE 177 (680)
T ss_dssp CSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEE
T ss_pred CCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEE
Confidence 88 8888875444334567788888888888855445556667788888888888888876654 332 446788887
No 82
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.65 E-value=4.1e-16 Score=121.71 Aligned_cols=149 Identities=17% Similarity=0.158 Sum_probs=107.3
Q ss_pred CCCCcEEeeCCccccccCchhhcCCCCccEEEecCCCCCCCCCCCCccccccCCCCccEEEeeCCcCcc--ccccccccc
Q 038441 2 LKFPSTLNLFGLLKFRLFPEIMGRMEHLLVLRLLGTAIRGLPICLKLEKFSKSMKSLTMLILDGTTIRE--LPLSVELLT 79 (169)
Q Consensus 2 l~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~--lp~~~~~~~ 79 (169)
++.|++|++++|......|+.+..+++|++|++++|.+++++ -..+ ..+++|++|++++|.++. .|..++.++
T Consensus 49 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~ 123 (549)
T 2z81_A 49 CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLS----SSWF-GPLSSLKYLNLMGNPYQTLGVTSLFPNLT 123 (549)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCC----HHHH-TTCTTCCEEECTTCCCSSSCSSCSCTTCT
T ss_pred CCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccC----HHHh-ccCCCCcEEECCCCcccccchhhhhhccC
Confidence 578899999987644444567888999999999997666521 0011 567788888888888874 456678888
Q ss_pred ceE-EEecccccCCccc-cccccCCccCEEecCCCCCCCCcchhhhcCCCCceEeccCCcceecChhh-hcCCCcceEE
Q 038441 80 GLL-LNLKDWQYLESLP-STINGLKSFKILNLSSCSKLENVPENLGKVESLEELDISRTAIRQLPTSI-FLLKNLKAVD 155 (169)
Q Consensus 80 ~L~-l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~l~~L~~L~ 155 (169)
+|+ +++++|.....++ ..+..+++|++|++++|......|..+..+++|++|+++.|.+..+|..+ ..+++|+.|+
T Consensus 124 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 202 (549)
T 2z81_A 124 NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLE 202 (549)
T ss_dssp TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEE
T ss_pred CccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEE
Confidence 888 8888875456565 46777888888888875544556777777778888888777777666543 4567777777
No 83
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.65 E-value=8.4e-16 Score=118.88 Aligned_cols=159 Identities=15% Similarity=0.062 Sum_probs=107.7
Q ss_pred CCCcEEeeCCccccccCchhhcCCCCccEEEecCCCCCCCCC-------------CCCccccccCCCCccEEEeeCCcCc
Q 038441 3 KFPSTLNLFGLLKFRLFPEIMGRMEHLLVLRLLGTAIRGLPI-------------CLKLEKFSKSMKSLTMLILDGTTIR 69 (169)
Q Consensus 3 ~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------------~~~l~~~~~~~~~L~~L~l~~~~~~ 69 (169)
++|++|++++|......|..+..+++|++|++++|.+++.+. .+.++.++ ..++|++|++++|.++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~-~~~~L~~L~L~~N~l~ 112 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELL-VGPSIETLHAANNNIS 112 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEE-ECTTCCEEECCSSCCC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCC-CCCCcCEEECcCCcCC
Confidence 378999999976444445678889999999999987764211 01111221 1245555555555555
Q ss_pred ccccccccccceE-EEecccccCCccccccccCCccCEEecCCCCCCCCcchhhh-cCCCCceEeccCCcceecChhhhc
Q 038441 70 ELPLSVELLTGLL-LNLKDWQYLESLPSTINGLKSFKILNLSSCSKLENVPENLG-KVESLEELDISRTAIRQLPTSIFL 147 (169)
Q Consensus 70 ~lp~~~~~~~~L~-l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~ 147 (169)
.++.. .+++|+ +++++|......|..+..+++|++|++++|......|..+. .+++|++|++++|.++.++.. ..
T Consensus 113 ~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~-~~ 189 (487)
T 3oja_A 113 RVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ-VV 189 (487)
T ss_dssp CEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC-CC
T ss_pred CCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccccc-cc
Confidence 54432 356788 88888865555566778888999999988544444566665 788999999999998877543 35
Q ss_pred CCCcceEEcccccccccccCC
Q 038441 148 LKNLKAVDHYHLHHGICASLP 168 (169)
Q Consensus 148 l~~L~~L~~~~l~~~~~~~l~ 168 (169)
+++|+.|+ ++.+.+..+|
T Consensus 190 l~~L~~L~---Ls~N~l~~~~ 207 (487)
T 3oja_A 190 FAKLKTLD---LSSNKLAFMG 207 (487)
T ss_dssp CTTCCEEE---CCSSCCCEEC
T ss_pred CCCCCEEE---CCCCCCCCCC
Confidence 88899998 5556655543
No 84
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.65 E-value=1.5e-16 Score=116.68 Aligned_cols=148 Identities=16% Similarity=0.094 Sum_probs=103.3
Q ss_pred CCCcEEeeCCccccccCchhhcCCCCccEEEecCCCCCCCCCCCCccccc-cCCCCccEEEeeCCcCcccc-ccc-cccc
Q 038441 3 KFPSTLNLFGLLKFRLFPEIMGRMEHLLVLRLLGTAIRGLPICLKLEKFS-KSMKSLTMLILDGTTIRELP-LSV-ELLT 79 (169)
Q Consensus 3 ~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~-~~~~~L~~L~l~~~~~~~lp-~~~-~~~~ 79 (169)
+.|++|++++|. ++.++. ..+++|++|++++|.+++++ ... ..+++|++|++++|.++.++ ..+ ..++
T Consensus 99 ~~L~~L~l~~n~-l~~~~~--~~~~~L~~L~l~~N~l~~~~------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~ 169 (317)
T 3o53_A 99 PSIETLHAANNN-ISRVSC--SRGQGKKNIYLANNKITMLR------DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169 (317)
T ss_dssp TTCCEEECCSSC-CSEEEE--CCCSSCEEEECCSSCCCSGG------GBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTT
T ss_pred CCcCEEECCCCc-cCCcCc--cccCCCCEEECCCCCCCCcc------chhhhccCCCCEEECCCCCCCcccHHHHhhccC
Confidence 456666666643 444443 34778899999986665421 111 55678888888888888653 344 3678
Q ss_pred ceE-EEecccccCCccccccccCCccCEEecCCCCCCCCcchhhhcCCCCceEeccCCcceecChhhhcCCCcceEEccc
Q 038441 80 GLL-LNLKDWQYLESLPSTINGLKSFKILNLSSCSKLENVPENLGKVESLEELDISRTAIRQLPTSIFLLKNLKAVDHYH 158 (169)
Q Consensus 80 ~L~-l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~~~~ 158 (169)
+|+ +++++|. +..++. ...+++|++|++++ +.+..+|..+..+++|++|++++|.++.+|..+..+++|+.|+
T Consensus 170 ~L~~L~L~~N~-l~~~~~-~~~l~~L~~L~Ls~-N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~--- 243 (317)
T 3o53_A 170 TLEHLNLQYNF-IYDVKG-QVVFAKLKTLDLSS-NKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFD--- 243 (317)
T ss_dssp TCCEEECTTSC-CCEEEC-CCCCTTCCEEECCS-SCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEE---
T ss_pred cCCEEECCCCc-Cccccc-ccccccCCEEECCC-CcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEE---
Confidence 888 8888874 444443 23578888888887 5677777778888888888888888888888888888888888
Q ss_pred ccccccc
Q 038441 159 LHHGICA 165 (169)
Q Consensus 159 l~~~~~~ 165 (169)
++.+.+.
T Consensus 244 l~~N~~~ 250 (317)
T 3o53_A 244 LRGNGFH 250 (317)
T ss_dssp CTTCCCB
T ss_pred ccCCCcc
Confidence 5555443
No 85
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.65 E-value=1.4e-15 Score=120.13 Aligned_cols=140 Identities=26% Similarity=0.327 Sum_probs=109.1
Q ss_pred ccccCchhhcCCCCccEEEecCCCCCCCCCCCCccccccCCCCccEEEeeCCcCcccccc-cccccceE-EEecccccCC
Q 038441 15 KFRLFPEIMGRMEHLLVLRLLGTAIRGLPICLKLEKFSKSMKSLTMLILDGTTIRELPLS-VELLTGLL-LNLKDWQYLE 92 (169)
Q Consensus 15 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~lp~~-~~~~~~L~-l~l~~~~~~~ 92 (169)
.++.+|+.+ -+.+++|++++|.++.++. .++ ..+++|++|++++|.++.+++. +..+++|+ +++++|+ +.
T Consensus 42 ~l~~vP~~l--p~~~~~LdLs~N~i~~l~~----~~f-~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~-l~ 113 (635)
T 4g8a_A 42 NFYKIPDNL--PFSTKNLDLSFNPLRHLGS----YSF-FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQ 113 (635)
T ss_dssp CCSSCCSSS--CTTCCEEECTTSCCCEECT----TTT-TTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CC
T ss_pred CcCccCCCC--CcCCCEEEeeCCCCCCCCH----HHH-hCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc-CC
Confidence 567788643 1479999999966554211 011 6788999999999999998775 88899999 9999984 55
Q ss_pred ccc-cccccCCccCEEecCCCCCCCCcch-hhhcCCCCceEeccCCccee--cChhhhcCCCcceEEccccccccccc
Q 038441 93 SLP-STINGLKSFKILNLSSCSKLENVPE-NLGKVESLEELDISRTAIRQ--LPTSIFLLKNLKAVDHYHLHHGICAS 166 (169)
Q Consensus 93 ~~~-~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~--~~~~~~~l~~L~~L~~~~l~~~~~~~ 166 (169)
.+| ..+.++++|++|++++ +.+..++. .|+++++|++|++++|.++. +|..+..+++|++|+ ++.+.+..
T Consensus 114 ~l~~~~f~~L~~L~~L~Ls~-N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~---L~~N~l~~ 187 (635)
T 4g8a_A 114 SLALGAFSGLSSLQKLVAVE-TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD---LSSNKIQS 187 (635)
T ss_dssp EECGGGGTTCTTCCEEECTT-SCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEE---CCSSCCCE
T ss_pred CCCHHHhcCCCCCCEEECCC-CcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhc---ccCccccc
Confidence 555 4678999999999998 45666664 58999999999999999984 567888999999999 44454443
No 86
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.64 E-value=2.5e-15 Score=118.94 Aligned_cols=148 Identities=19% Similarity=0.272 Sum_probs=119.8
Q ss_pred CCCCcEEeeCCccccccCchhhcCCCCccEEEecCCCCCCCCCCCCccccccCCCCccEEEeeCCcCcccccccccccce
Q 038441 2 LKFPSTLNLFGLLKFRLFPEIMGRMEHLLVLRLLGTAIRGLPICLKLEKFSKSMKSLTMLILDGTTIRELPLSVELLTGL 81 (169)
Q Consensus 2 l~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~lp~~~~~~~~L 81 (169)
+..|+.|++++|. +..++ .+..+++|+.|++++|.+++++. + ..+++|+.|++++|.++.+| .+..+++|
T Consensus 42 L~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~------l-~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L 111 (605)
T 1m9s_A 42 LNSIDQIIANNSD-IKSVQ-GIQYLPNVTKLFLNGNKLTDIKP------L-TNLKNLGWLFLDENKIKDLS-SLKDLKKL 111 (605)
T ss_dssp HTTCCCCBCTTCC-CCCCT-TGGGCTTCCEEECTTSCCCCCGG------G-GGCTTCCEEECCSSCCCCCT-TSTTCTTC
T ss_pred CCCCCEEECcCCC-CCCCh-HHccCCCCCEEEeeCCCCCCChh------h-ccCCCCCEEECcCCCCCCCh-hhccCCCC
Confidence 4678899998865 66676 47889999999999977766321 1 67889999999999999876 68889999
Q ss_pred E-EEecccccCCccccccccCCccCEEecCCCCCCCCcchhhhcCCCCceEeccCCcceecChhhhcCCCcceEEccccc
Q 038441 82 L-LNLKDWQYLESLPSTINGLKSFKILNLSSCSKLENVPENLGKVESLEELDISRTAIRQLPTSIFLLKNLKAVDHYHLH 160 (169)
Q Consensus 82 ~-l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~~~~l~ 160 (169)
+ |++++|. +..+ +.+..+++|+.|++++ +.+..+ ..+..+++|+.|++++|.+..++. +..+++|+.|+ ++
T Consensus 112 ~~L~Ls~N~-l~~l-~~l~~l~~L~~L~Ls~-N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~---Ls 183 (605)
T 1m9s_A 112 KSLSLEHNG-ISDI-NGLVHLPQLESLYLGN-NKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLY---LS 183 (605)
T ss_dssp CEEECTTSC-CCCC-GGGGGCTTCSEEECCS-SCCCCC-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEE---CC
T ss_pred CEEEecCCC-CCCC-ccccCCCccCEEECCC-CccCCc-hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEE---Cc
Confidence 9 9999985 4444 4578999999999998 456666 578999999999999999998765 88899999999 55
Q ss_pred ccccccC
Q 038441 161 HGICASL 167 (169)
Q Consensus 161 ~~~~~~l 167 (169)
.+.+..+
T Consensus 184 ~N~i~~l 190 (605)
T 1m9s_A 184 KNHISDL 190 (605)
T ss_dssp SSCCCBC
T ss_pred CCCCCCC
Confidence 5555443
No 87
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.64 E-value=2.1e-15 Score=111.11 Aligned_cols=145 Identities=17% Similarity=0.293 Sum_probs=83.7
Q ss_pred CCCcEEeeCCccccccC-chhhcCCCCccEEEecCCCCCCCCCCCCccccccCCCCccEEEeeCCcCcccccccccccce
Q 038441 3 KFPSTLNLFGLLKFRLF-PEIMGRMEHLLVLRLLGTAIRGLPICLKLEKFSKSMKSLTMLILDGTTIRELPLSVELLTGL 81 (169)
Q Consensus 3 ~~l~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~lp~~~~~~~~L 81 (169)
+.+++|++++|. ++.+ +..+..+++|++|++++|.++++. ...+ ..+++|++|++++|.++.+|..+. ++|
T Consensus 54 ~~l~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~-~~l~~L~~L~L~~n~l~~l~~~~~--~~L 125 (332)
T 2ft3_A 54 PDTTLLDLQNND-ISELRKDDFKGLQHLYALVLVNNKISKIH----EKAF-SPLRKLQKLYISKNHLVEIPPNLP--SSL 125 (332)
T ss_dssp TTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEEC----GGGS-TTCTTCCEEECCSSCCCSCCSSCC--TTC
T ss_pred CCCeEEECCCCc-CCccCHhHhhCCCCCcEEECCCCccCccC----HhHh-hCcCCCCEEECCCCcCCccCcccc--ccC
Confidence 467888888865 4444 456788888888888886655421 0011 455666666666666666665544 456
Q ss_pred E-EEecccccCCccccccccCCccCEEecCCCCCC--CCcchhhhcC--------------------CCCceEeccCCcc
Q 038441 82 L-LNLKDWQYLESLPSTINGLKSFKILNLSSCSKL--ENVPENLGKV--------------------ESLEELDISRTAI 138 (169)
Q Consensus 82 ~-l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~l--------------------~~L~~L~l~~n~l 138 (169)
+ +++++|......+..+..+++|++|++++|... ...+..+..+ ++|++|++++|.+
T Consensus 126 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i 205 (332)
T 2ft3_A 126 VELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKI 205 (332)
T ss_dssp CEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCC
T ss_pred CEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcC
Confidence 6 666665333222234556666666666653221 1222223222 4566666666666
Q ss_pred eecC-hhhhcCCCcceEE
Q 038441 139 RQLP-TSIFLLKNLKAVD 155 (169)
Q Consensus 139 ~~~~-~~~~~l~~L~~L~ 155 (169)
+.++ ..+..+++|+.|+
T Consensus 206 ~~~~~~~l~~l~~L~~L~ 223 (332)
T 2ft3_A 206 QAIELEDLLRYSKLYRLG 223 (332)
T ss_dssp CCCCTTSSTTCTTCSCCB
T ss_pred CccCHHHhcCCCCCCEEE
Confidence 6544 3566677777777
No 88
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.64 E-value=3.4e-15 Score=117.84 Aligned_cols=147 Identities=17% Similarity=0.127 Sum_probs=108.2
Q ss_pred CCCcEEeeCCccccccCchhhcCCCCccEEEecCCCCCCCCCCCCccccccCCCCccEEEeeCCcCccc-ccccccccce
Q 038441 3 KFPSTLNLFGLLKFRLFPEIMGRMEHLLVLRLLGTAIRGLPICLKLEKFSKSMKSLTMLILDGTTIREL-PLSVELLTGL 81 (169)
Q Consensus 3 ~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l-p~~~~~~~~L 81 (169)
+.+++|++++|......|..+..+++|++|++++|.++.+. -..+ ..+++|++|++++|.++.+ |..++.+++|
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~----~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 107 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIH----EDTF-QSQHRLDTLVLTANPLIFMAETALSGPKAL 107 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEEC----TTTT-TTCTTCCEEECTTCCCSEECTTTTSSCTTC
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeC----hhhc-cCccccCeeeCCCCcccccChhhhcccccc
Confidence 46789999986644444667888999999999996654410 0011 6678899999999988865 5568888999
Q ss_pred E-EEecccccCCccccccccCCccCEEecCCCCCCCCc-chhhhcCCCCceEeccCCcceec-ChhhhcCCCcc--eEE
Q 038441 82 L-LNLKDWQYLESLPSTINGLKSFKILNLSSCSKLENV-PENLGKVESLEELDISRTAIRQL-PTSIFLLKNLK--AVD 155 (169)
Q Consensus 82 ~-l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~l~~L~--~L~ 155 (169)
+ +++++|......+..+..+++|++|++++| .+..+ ...+..+++|++|++++|.++.+ +..+..+++++ .|+
T Consensus 108 ~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~ 185 (606)
T 3t6q_A 108 KHLFFIQTGISSIDFIPLHNQKTLESLYLGSN-HISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLN 185 (606)
T ss_dssp CEEECTTSCCSCGGGSCCTTCTTCCEEECCSS-CCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEE
T ss_pred cEeeccccCcccCCcchhccCCcccEEECCCC-cccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEe
Confidence 9 999988544433567788899999999884 45443 23444588999999999998866 44678888888 676
No 89
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.64 E-value=3.7e-15 Score=104.01 Aligned_cols=130 Identities=17% Similarity=0.294 Sum_probs=104.6
Q ss_pred CCCcEEeeCCccccccC-c-hhhcCCCCccEEEecCCCCCCCCCCCCccccccCCCCccEEEeeCCcCcccccc-ccccc
Q 038441 3 KFPSTLNLFGLLKFRLF-P-EIMGRMEHLLVLRLLGTAIRGLPICLKLEKFSKSMKSLTMLILDGTTIRELPLS-VELLT 79 (169)
Q Consensus 3 ~~l~~L~l~~~~~~~~~-~-~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~lp~~-~~~~~ 79 (169)
+.+++|+++++. ++.+ + ..+..+++|++|++++|.+++++. ..+ ..+++|++|++++|.++.+++. +..++
T Consensus 32 ~~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~----~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 105 (220)
T 2v70_A 32 QYTAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNNKITDIEE----GAF-EGASGVNEILLTSNRLENVQHKMFKGLE 105 (220)
T ss_dssp TTCSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSSCCCEECT----TTT-TTCTTCCEEECCSSCCCCCCGGGGTTCS
T ss_pred CCCCEEEcCCCc-CCccCchhhhccCCCCCEEECCCCcCCEECH----HHh-CCCCCCCEEECCCCccCccCHhHhcCCc
Confidence 357899999965 5555 3 347889999999999976654211 011 6788999999999999988765 88899
Q ss_pred ceE-EEecccccCCccccccccCCccCEEecCCCCCCCCc-chhhhcCCCCceEeccCCcce
Q 038441 80 GLL-LNLKDWQYLESLPSTINGLKSFKILNLSSCSKLENV-PENLGKVESLEELDISRTAIR 139 (169)
Q Consensus 80 ~L~-l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~n~l~ 139 (169)
+|+ +++++|......+..+..+++|++|++++| .+..+ |..+..+++|+++++++|.+.
T Consensus 106 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 106 SLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CCCEEECCCCcCCeECHhHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 999 999998666555778889999999999984 55555 778999999999999999886
No 90
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.63 E-value=1.9e-15 Score=118.53 Aligned_cols=135 Identities=19% Similarity=0.218 Sum_probs=99.1
Q ss_pred cCCCCccEEEecCCCCCCCCCCCCccccccCCCCccEEEeeCCcCcccc---cccccccceE-EEecccccCCcccc-cc
Q 038441 24 GRMEHLLVLRLLGTAIRGLPICLKLEKFSKSMKSLTMLILDGTTIRELP---LSVELLTGLL-LNLKDWQYLESLPS-TI 98 (169)
Q Consensus 24 ~~l~~L~~L~l~~n~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~lp---~~~~~~~~L~-l~l~~~~~~~~~~~-~~ 98 (169)
..+++|++|++++|.+++. ....+ ..+++|++|++++|.++.++ ..+..+++|+ +++++|.....+|. .+
T Consensus 350 ~~l~~L~~L~l~~n~l~~~----~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 424 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDS----VFQGC-STLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTC 424 (562)
T ss_dssp SSCCCCCEEECCSSCCCTT----TTTTC-CSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCC
T ss_pred cCCCCceEEECCCCccccc----hhhhh-cccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhh
Confidence 4567777777777665541 01111 56788999999999888654 4578888999 99998865554665 46
Q ss_pred ccCCccCEEecCCCCCCCCcchhhhcCCCCceEeccCCcceecChhhhcCCCcceEEcccccccccccCC
Q 038441 99 NGLKSFKILNLSSCSKLENVPENLGKVESLEELDISRTAIRQLPTSIFLLKNLKAVDHYHLHHGICASLP 168 (169)
Q Consensus 99 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~~~~l~~~~~~~l~ 168 (169)
..+++|++|++++|...+..|..+. ++|++|++++|.++.+|..+..+++|++|+ ++.+.+..+|
T Consensus 425 ~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~---L~~N~l~~l~ 489 (562)
T 3a79_B 425 AWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELN---VASNQLKSVP 489 (562)
T ss_dssp CCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEE---CCSSCCCCCC
T ss_pred cCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEE---CCCCCCCCCC
Confidence 6788999999988554444444332 689999999999999999888999999999 6667777665
No 91
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.63 E-value=5.3e-15 Score=102.12 Aligned_cols=130 Identities=25% Similarity=0.336 Sum_probs=101.1
Q ss_pred CCCcEEeeCCccccccCch-hhcCCCCccEEEecCCCCCCCCCCCCccccccCCCCccEEEeeCCcCcccccc-cccccc
Q 038441 3 KFPSTLNLFGLLKFRLFPE-IMGRMEHLLVLRLLGTAIRGLPICLKLEKFSKSMKSLTMLILDGTTIRELPLS-VELLTG 80 (169)
Q Consensus 3 ~~l~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~lp~~-~~~~~~ 80 (169)
+.+++|+++++. ++.+++ .+..+++|++|++++|.++.++. ..+ ..+++|++|++++|.++.+++. +..+++
T Consensus 28 ~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 101 (208)
T 2o6s_A 28 AQTTYLDLETNS-LKSLPNGVFDELTSLTQLYLGGNKLQSLPN----GVF-NKLTSLTYLNLSTNQLQSLPNGVFDKLTQ 101 (208)
T ss_dssp TTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCT----TTT-TTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCcEEEcCCCc-cCcCChhhhcccccCcEEECCCCccCccCh----hhc-CCCCCcCEEECCCCcCCccCHhHhcCccC
Confidence 468999999975 555554 47789999999999976665321 011 5678999999999999988765 688999
Q ss_pred eE-EEecccccCCccccccccCCccCEEecCCCCCCCCcch-hhhcCCCCceEeccCCcce
Q 038441 81 LL-LNLKDWQYLESLPSTINGLKSFKILNLSSCSKLENVPE-NLGKVESLEELDISRTAIR 139 (169)
Q Consensus 81 L~-l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~ 139 (169)
|+ +++++|......+..+..+++|++|++++ +.+..++. .+..+++|+++++++|.+.
T Consensus 102 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 102 LKELALNTNQLQSLPDGVFDKLTQLKDLRLYQ-NQLKSVPDGVFDRLTSLQYIWLHDNPWD 161 (208)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred CCEEEcCCCcCcccCHhHhccCCcCCEEECCC-CccceeCHHHhccCCCccEEEecCCCee
Confidence 99 99999854433344578899999999998 45666655 4788999999999999766
No 92
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.63 E-value=8.5e-15 Score=112.51 Aligned_cols=156 Identities=19% Similarity=0.268 Sum_probs=95.0
Q ss_pred CCCCcEEeeCCccccccCchhhcCCCCccEEEecCCCCCCCCC-------------CCCccccc--cCCCCccEEEeeCC
Q 038441 2 LKFPSTLNLFGLLKFRLFPEIMGRMEHLLVLRLLGTAIRGLPI-------------CLKLEKFS--KSMKSLTMLILDGT 66 (169)
Q Consensus 2 l~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------------~~~l~~~~--~~~~~L~~L~l~~~ 66 (169)
++.|+.|++++|. ++.++ .+..+++|++|++++|.+++.+. .+.++.++ ..+++|+.|++++|
T Consensus 220 l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n 297 (466)
T 1o6v_A 220 LTNLDELSLNGNQ-LKDIG-TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNEN 297 (466)
T ss_dssp CTTCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSS
T ss_pred cCCCCEEECCCCC-cccch-hhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCccccccCCCccCeEEcCCC
Confidence 3556666666643 44443 35556666666666655554221 01122222 45667777777777
Q ss_pred cCcccccccccccceE-EEecccccCCccccccccCCccCEEecCCCCCCCCcchhhhcCCCCceEeccCCcceecChhh
Q 038441 67 TIRELPLSVELLTGLL-LNLKDWQYLESLPSTINGLKSFKILNLSSCSKLENVPENLGKVESLEELDISRTAIRQLPTSI 145 (169)
Q Consensus 67 ~~~~lp~~~~~~~~L~-l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 145 (169)
.++.+++ +..+++|+ +++++|+..+..+ +..+++|++|++++| .+..+ ..+.++++|+.|++++|.++.++. +
T Consensus 298 ~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n-~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~-~ 371 (466)
T 1o6v_A 298 QLEDISP-ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNN-KVSDV-SSLANLTNINWLSAGHNQISDLTP-L 371 (466)
T ss_dssp CCSCCGG-GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSS-CCCCC-GGGTTCTTCCEEECCSSCCCBCGG-G
T ss_pred cccCchh-hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCC-ccCCc-hhhccCCCCCEEeCCCCccCccch-h
Confidence 7776554 56677777 7777764433322 567777788877774 44444 357777888888888888876554 6
Q ss_pred hcCCCcceEEcccccccccccCC
Q 038441 146 FLLKNLKAVDHYHLHHGICASLP 168 (169)
Q Consensus 146 ~~l~~L~~L~~~~l~~~~~~~l~ 168 (169)
..+++|+.|+ +..+.|..+|
T Consensus 372 ~~l~~L~~L~---l~~n~~~~~p 391 (466)
T 1o6v_A 372 ANLTRITQLG---LNDQAWTNAP 391 (466)
T ss_dssp TTCTTCCEEE---CCCEEEECCC
T ss_pred hcCCCCCEEe---ccCCcccCCc
Confidence 7778888887 5555555443
No 93
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.63 E-value=5.3e-15 Score=101.22 Aligned_cols=123 Identities=25% Similarity=0.364 Sum_probs=71.3
Q ss_pred EEeeCCccccccCchhhcCCCCccEEEecCCCCCCCCCCCCccccccCCCCccEEEeeCCcCccccc-ccccccceE-EE
Q 038441 7 TLNLFGLLKFRLFPEIMGRMEHLLVLRLLGTAIRGLPICLKLEKFSKSMKSLTMLILDGTTIRELPL-SVELLTGLL-LN 84 (169)
Q Consensus 7 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~lp~-~~~~~~~L~-l~ 84 (169)
.++.++ +.++.+|..+ .+++++|++++|.++.++ ..+ ..+++|+.|++++|.++.+++ .+..+++|+ ++
T Consensus 14 ~l~~~~-~~l~~ip~~~--~~~l~~L~L~~n~i~~ip-----~~~-~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ 84 (193)
T 2wfh_A 14 VVRCSN-KGLKVLPKGI--PRDVTELYLDGNQFTLVP-----KEL-SNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLI 84 (193)
T ss_dssp EEECTT-SCCSSCCSCC--CTTCCEEECCSSCCCSCC-----GGG-GGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred EEEcCC-CCCCcCCCCC--CCCCCEEECCCCcCchhH-----HHh-hcccCCCEEECCCCcCCEeCHhHccCCCCCCEEE
Confidence 455554 3355666543 356677777775544321 011 455667777777777666544 366666777 77
Q ss_pred ecccccCCccccccccCCccCEEecCCCCCCCCcch-hhhcCCCCceEeccCCcce
Q 038441 85 LKDWQYLESLPSTINGLKSFKILNLSSCSKLENVPE-NLGKVESLEELDISRTAIR 139 (169)
Q Consensus 85 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~ 139 (169)
+++|......+..+..+++|++|++++ |.+..+|. .+..+++|+.+++++|.+.
T Consensus 85 Ls~N~l~~i~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 85 LSYNRLRCIPPRTFDGLKSLRLLSLHG-NDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCccCEeCHHHhCCCCCCCEEECCC-CCCCeeChhhhhcCccccEEEeCCCCee
Confidence 776643333344566666777777766 44555544 3566667777777776654
No 94
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.63 E-value=1.8e-15 Score=99.25 Aligned_cols=125 Identities=24% Similarity=0.278 Sum_probs=91.8
Q ss_pred CCCCccEEEecCCCCCCCCCCCCccccccCCCCccEEEeeCCcCcccccccccccceE-EEecccccCCccccccccCCc
Q 038441 25 RMEHLLVLRLLGTAIRGLPICLKLEKFSKSMKSLTMLILDGTTIRELPLSVELLTGLL-LNLKDWQYLESLPSTINGLKS 103 (169)
Q Consensus 25 ~l~~L~~L~l~~n~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~lp~~~~~~~~L~-l~l~~~~~~~~~~~~~~~~~~ 103 (169)
..+++++|++++|.++. ..+......+++|++|++++|.++.+ ..++.+++|+ +++++|.....+|..+..+++
T Consensus 15 ~~~~l~~L~l~~n~l~~----~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 89 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNE----GKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPN 89 (149)
T ss_dssp CGGGCSEEECTTCBCBT----TBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTT
T ss_pred CCccCeEEEccCCcCCh----hHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCC
Confidence 34678888888866651 01111115667888888888888876 6677788888 888887555546666667888
Q ss_pred cCEEecCCCCCCCCcc--hhhhcCCCCceEeccCCcceecCh----hhhcCCCcceEE
Q 038441 104 FKILNLSSCSKLENVP--ENLGKVESLEELDISRTAIRQLPT----SIFLLKNLKAVD 155 (169)
Q Consensus 104 L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~----~~~~l~~L~~L~ 155 (169)
|++|++++ +.+..++ ..+.++++|++|++++|.++.++. .+..+++|+.|+
T Consensus 90 L~~L~ls~-N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~ 146 (149)
T 2je0_A 90 LTHLNLSG-NKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLD 146 (149)
T ss_dssp CCEEECTT-SCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEET
T ss_pred CCEEECCC-CcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCccccc
Confidence 99999888 4566654 678888899999999998887765 577888888887
No 95
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.63 E-value=1.4e-15 Score=108.80 Aligned_cols=142 Identities=20% Similarity=0.208 Sum_probs=111.6
Q ss_pred cEEeeCCccccccCchhhcCCCCccEEEecCCCCCCCCCCCCccccccCCCCccEEEeeCCcCcccccccccccceE-EE
Q 038441 6 STLNLFGLLKFRLFPEIMGRMEHLLVLRLLGTAIRGLPICLKLEKFSKSMKSLTMLILDGTTIRELPLSVELLTGLL-LN 84 (169)
Q Consensus 6 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~lp~~~~~~~~L~-l~ 84 (169)
..+++.++ .++.++ .+..+++|++|++++|.++.++ .+ ..+++|++|++++|.++.+++ +..+++|+ ++
T Consensus 22 ~~l~l~~~-~i~~~~-~~~~l~~L~~L~l~~n~i~~l~------~l-~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~ 91 (263)
T 1xeu_A 22 VKQNLGKQ-SVTDLV-SQKELSGVQNFNGDNSNIQSLA------GM-QFFTNLKELHLSHNQISDLSP-LKDLTKLEELS 91 (263)
T ss_dssp HHHHHTCS-CTTSEE-CHHHHTTCSEEECTTSCCCCCT------TG-GGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEE
T ss_pred HHHHhcCC-Cccccc-chhhcCcCcEEECcCCCcccch------HH-hhCCCCCEEECCCCccCCChh-hccCCCCCEEE
Confidence 34556553 456666 4778999999999997665521 11 667899999999999998877 88999999 99
Q ss_pred ecccccCCccccccccCCccCEEecCCCCCCCCcchhhhcCCCCceEeccCCcceecChhhhcCCCcceEEccccccccc
Q 038441 85 LKDWQYLESLPSTINGLKSFKILNLSSCSKLENVPENLGKVESLEELDISRTAIRQLPTSIFLLKNLKAVDHYHLHHGIC 164 (169)
Q Consensus 85 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~~~~l~~~~~ 164 (169)
+++| .+..++... . ++|++|++++ +.+..++ .+.++++|+.|++++|+++.++ .+..+++|+.|+ ++.+.+
T Consensus 92 L~~N-~l~~l~~~~-~-~~L~~L~L~~-N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~---L~~N~i 162 (263)
T 1xeu_A 92 VNRN-RLKNLNGIP-S-ACLSRLFLDN-NELRDTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLD---LHGNEI 162 (263)
T ss_dssp CCSS-CCSCCTTCC-C-SSCCEEECCS-SCCSBSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEE---CTTSCC
T ss_pred CCCC-ccCCcCccc-c-CcccEEEccC-CccCCCh-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEE---CCCCcC
Confidence 9998 455555433 3 8999999998 5666665 5889999999999999999886 688899999999 555555
Q ss_pred cc
Q 038441 165 AS 166 (169)
Q Consensus 165 ~~ 166 (169)
..
T Consensus 163 ~~ 164 (263)
T 1xeu_A 163 TN 164 (263)
T ss_dssp CB
T ss_pred cc
Confidence 43
No 96
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.62 E-value=9.1e-15 Score=112.27 Aligned_cols=143 Identities=20% Similarity=0.186 Sum_probs=77.1
Q ss_pred CCCCcEEeeCCccccccCchhhcCCCCccEEEecCCCCCCCCC------------CCCccccc-cCCCCccEEEeeCCcC
Q 038441 2 LKFPSTLNLFGLLKFRLFPEIMGRMEHLLVLRLLGTAIRGLPI------------CLKLEKFS-KSMKSLTMLILDGTTI 68 (169)
Q Consensus 2 l~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------------~~~l~~~~-~~~~~L~~L~l~~~~~ 68 (169)
++.|++|++++| .++.+| .+..+++|++|++++|.+++++. .+.++.++ ..+++|++|++++|.+
T Consensus 41 l~~L~~L~Ls~n-~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~N~l 118 (457)
T 3bz5_A 41 LATLTSLDCHNS-SITDMT-GIEKLTGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKL 118 (457)
T ss_dssp HTTCCEEECCSS-CCCCCT-TGGGCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECCSSCC
T ss_pred cCCCCEEEccCC-CcccCh-hhcccCCCCEEEccCCcCCeEccccCCCCCEEECcCCCCceeecCCCCcCCEEECCCCcC
Confidence 356777777775 355555 46677777777777766665421 11222223 4455666666666666
Q ss_pred cccccccccccceE-EEecccccCCccccccccCCccCEEecCCCCCCCCcchhhhcCCCCceEeccCCcceecChhhhc
Q 038441 69 RELPLSVELLTGLL-LNLKDWQYLESLPSTINGLKSFKILNLSSCSKLENVPENLGKVESLEELDISRTAIRQLPTSIFL 147 (169)
Q Consensus 69 ~~lp~~~~~~~~L~-l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 147 (169)
+.+| ++.+++|+ +++++|.... ++ +..+++|++|++++|..++.+ .+..+++|++|++++|.++.+| +..
T Consensus 119 ~~l~--~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~--l~~ 189 (457)
T 3bz5_A 119 TKLD--VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD--VSQ 189 (457)
T ss_dssp SCCC--CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC--CTT
T ss_pred Ceec--CCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec--ccc
Confidence 6553 55566666 6666653322 22 445555555555554334333 2444555555555555555544 334
Q ss_pred CCCcceEE
Q 038441 148 LKNLKAVD 155 (169)
Q Consensus 148 l~~L~~L~ 155 (169)
+++|+.|+
T Consensus 190 l~~L~~L~ 197 (457)
T 3bz5_A 190 NKLLNRLN 197 (457)
T ss_dssp CTTCCEEE
T ss_pred CCCCCEEE
Confidence 44444444
No 97
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.62 E-value=9.2e-15 Score=112.23 Aligned_cols=143 Identities=20% Similarity=0.166 Sum_probs=72.9
Q ss_pred CCCcEEeeCCccccccCchhhcCCCCccEEEecCCCCCCCCC------------CCCccccc-cCCCCccEEEeeCCcCc
Q 038441 3 KFPSTLNLFGLLKFRLFPEIMGRMEHLLVLRLLGTAIRGLPI------------CLKLEKFS-KSMKSLTMLILDGTTIR 69 (169)
Q Consensus 3 ~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------------~~~l~~~~-~~~~~L~~L~l~~~~~~ 69 (169)
+.|++|++++|. ++.+| +..+++|++|++++|.+++++. .+.++.++ ..+++|++|++++|.++
T Consensus 64 ~~L~~L~Ls~n~-l~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~N~l~~l~~~~l~~L~~L~l~~N~l~ 140 (457)
T 3bz5_A 64 TGLTKLICTSNN-ITTLD--LSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLT 140 (457)
T ss_dssp TTCSEEECCSSC-CSCCC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECCSSCCSCCCCTTCTTCCEEECTTSCCS
T ss_pred CCCCEEEccCCc-CCeEc--cccCCCCCEEECcCCCCceeecCCCCcCCEEECCCCcCCeecCCCCCcCCEEECCCCccc
Confidence 445555555543 33333 4445555555555555444320 12223333 55667777777777776
Q ss_pred ccccccccccceE-EEecccccCCccccccccCCccCEEecCCCCCCCCcch-------------------hhhcCCCCc
Q 038441 70 ELPLSVELLTGLL-LNLKDWQYLESLPSTINGLKSFKILNLSSCSKLENVPE-------------------NLGKVESLE 129 (169)
Q Consensus 70 ~lp~~~~~~~~L~-l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-------------------~~~~l~~L~ 129 (169)
.++ ++.+++|+ +++++|...+.+ .+..+++|++|++++ +.+..+|- .+..+++|+
T Consensus 141 ~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~-n~l~~l~l~~l~~L~~L~l~~N~l~~~~l~~l~~L~ 215 (457)
T 3bz5_A 141 EID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSF-NKITELDVSQNKLLNRLNCDTNNITKLDLNQNIQLT 215 (457)
T ss_dssp CCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCS-SCCCCCCCTTCTTCCEEECCSSCCSCCCCTTCTTCS
T ss_pred eec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCC-CccceeccccCCCCCEEECcCCcCCeeccccCCCCC
Confidence 653 45555566 666555333333 233444555555544 23333320 245555666
Q ss_pred eEeccCCcceecChhhhcCCCcceEE
Q 038441 130 ELDISRTAIRQLPTSIFLLKNLKAVD 155 (169)
Q Consensus 130 ~L~l~~n~l~~~~~~~~~l~~L~~L~ 155 (169)
+|++++|.++.+| +..+++|+.|+
T Consensus 216 ~L~Ls~N~l~~ip--~~~l~~L~~L~ 239 (457)
T 3bz5_A 216 FLDCSSNKLTEID--VTPLTQLTYFD 239 (457)
T ss_dssp EEECCSSCCSCCC--CTTCTTCSEEE
T ss_pred EEECcCCcccccC--ccccCCCCEEE
Confidence 6666666666655 45566666666
No 98
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.61 E-value=5.6e-15 Score=120.91 Aligned_cols=146 Identities=22% Similarity=0.175 Sum_probs=105.3
Q ss_pred CCCCcEEeeCCccccccCchhhcCCCCccEEEecCCCCCCCCCCCCccccc----cCCCCccEEEeeCCcCccc-ccccc
Q 038441 2 LKFPSTLNLFGLLKFRLFPEIMGRMEHLLVLRLLGTAIRGLPICLKLEKFS----KSMKSLTMLILDGTTIREL-PLSVE 76 (169)
Q Consensus 2 l~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~----~~~~~L~~L~l~~~~~~~l-p~~~~ 76 (169)
.+.+++|++++|......+..+..+++|++|++++|... ..++ ..+++|++|++++|.++.+ |..++
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~--------~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~ 94 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTP--------LTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQ 94 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCC--------CEECTTTTSSCTTCCEEECTTCCCCEECTTSSC
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCc--------cccCHHHhcCCCCCCEEECCCCcCcccCHhHcc
Confidence 357888999887644445667888999999999885332 2331 6778889999999988866 66788
Q ss_pred cccceE-EEecccccCCccccc--cccCCccCEEecCCCCCCCCcc-hhhhcCCCCceEeccCCccee-cChhhhcC--C
Q 038441 77 LLTGLL-LNLKDWQYLESLPST--INGLKSFKILNLSSCSKLENVP-ENLGKVESLEELDISRTAIRQ-LPTSIFLL--K 149 (169)
Q Consensus 77 ~~~~L~-l~l~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~-~~~~~~~l--~ 149 (169)
.+++|+ +++++|......+.. +..+++|++|++++|......+ ..++++++|++|++++|.++. .+..+..+ +
T Consensus 95 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~ 174 (844)
T 3j0a_A 95 GLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGK 174 (844)
T ss_dssp SCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHC
T ss_pred CCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCC
Confidence 888899 999888665545543 7788889999998854333323 468888899999999888874 44455555 5
Q ss_pred CcceEE
Q 038441 150 NLKAVD 155 (169)
Q Consensus 150 ~L~~L~ 155 (169)
+|+.|+
T Consensus 175 ~L~~L~ 180 (844)
T 3j0a_A 175 TLSFFS 180 (844)
T ss_dssp SSCCCE
T ss_pred ccceEE
Confidence 666666
No 99
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.61 E-value=8e-15 Score=100.20 Aligned_cols=127 Identities=19% Similarity=0.216 Sum_probs=90.0
Q ss_pred cEEeeCCccccccCchhhcCCCCccEEEecCCCCCCCCCCCCccccccCCCCccEEEeeCCcCccc-ccccccccceE-E
Q 038441 6 STLNLFGLLKFRLFPEIMGRMEHLLVLRLLGTAIRGLPICLKLEKFSKSMKSLTMLILDGTTIREL-PLSVELLTGLL-L 83 (169)
Q Consensus 6 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l-p~~~~~~~~L~-l 83 (169)
+.++++++ .++.+|..+ ...+++|++++|.++.++.- ..-..+++|++|++++|.++.+ |..+..+++|+ +
T Consensus 11 ~~l~~s~~-~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~----~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 83 (192)
T 1w8a_A 11 TTVDCTGR-GLKEIPRDI--PLHTTELLLNDNELGRISSD----GLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQEL 83 (192)
T ss_dssp TEEECTTS-CCSSCCSCC--CTTCSEEECCSCCCCSBCCS----CSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred CEEEcCCC-CcCcCccCC--CCCCCEEECCCCcCCccCCc----cccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEE
Confidence 56777774 467777654 23888888888776653210 1114567888888888888866 55688888888 8
Q ss_pred EecccccCCccccccccCCccCEEecCCCCCCCCcchhhhcCCCCceEeccCCcce
Q 038441 84 NLKDWQYLESLPSTINGLKSFKILNLSSCSKLENVPENLGKVESLEELDISRTAIR 139 (169)
Q Consensus 84 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 139 (169)
++++|......+..+..+++|++|++++|......|..+..+++|+++++++|.+.
T Consensus 84 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 84 QLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp ECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred ECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 88887554444556778888888888884433444667888888888888888877
No 100
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.60 E-value=1e-15 Score=123.41 Aligned_cols=101 Identities=24% Similarity=0.286 Sum_probs=56.6
Q ss_pred cCCCCccEEEeeCCcCcccccccccccceE-EEecccccCCccccccccCCccCEEecCCCCCCCCcchhhhcCCCCceE
Q 038441 53 KSMKSLTMLILDGTTIRELPLSVELLTGLL-LNLKDWQYLESLPSTINGLKSFKILNLSSCSKLENVPENLGKVESLEEL 131 (169)
Q Consensus 53 ~~~~~L~~L~l~~~~~~~lp~~~~~~~~L~-l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 131 (169)
..++.|+.|++++|.+..+|..++.+++|+ |++++|. +..+|..+..+++|++|++++ |.+..+|..++++++|++|
T Consensus 221 ~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~-N~l~~lp~~~~~l~~L~~L 298 (727)
T 4b8c_D 221 YDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSH-NRLTSLPAELGSCFQLKYF 298 (727)
T ss_dssp -CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSC-CSCCCGGGGGGTTCCEEECTT-SCCSSCCSSGGGGTTCSEE
T ss_pred ccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCc-CcccChhhhCCCCCCEEeCcC-CcCCccChhhcCCCCCCEE
Confidence 344555566666655555555555555555 5565552 335555555555666666655 3344555555555566666
Q ss_pred eccCCcceecChhhhcCCCcceEE
Q 038441 132 DISRTAIRQLPTSIFLLKNLKAVD 155 (169)
Q Consensus 132 ~l~~n~l~~~~~~~~~l~~L~~L~ 155 (169)
++++|.++.+|..+..+++|+.|+
T Consensus 299 ~L~~N~l~~lp~~~~~l~~L~~L~ 322 (727)
T 4b8c_D 299 YFFDNMVTTLPWEFGNLCNLQFLG 322 (727)
T ss_dssp ECCSSCCCCCCSSTTSCTTCCCEE
T ss_pred ECCCCCCCccChhhhcCCCccEEe
Confidence 666665555555555555565555
No 101
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.60 E-value=2.8e-15 Score=101.05 Aligned_cols=124 Identities=19% Similarity=0.262 Sum_probs=72.9
Q ss_pred hcCCCCccEEEecCCCCCCCCCCCCccccccCCCCccEEEeeCCcCcccccccccccceE-EEecccccCCcccccc-cc
Q 038441 23 MGRMEHLLVLRLLGTAIRGLPICLKLEKFSKSMKSLTMLILDGTTIRELPLSVELLTGLL-LNLKDWQYLESLPSTI-NG 100 (169)
Q Consensus 23 ~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~lp~~~~~~~~L~-l~l~~~~~~~~~~~~~-~~ 100 (169)
+..+.+|++|++++|.++.+ ..+....++|++|++++|.++.+ +.+..+++|+ +++++|. +..+|..+ ..
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i------~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~ 86 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVI------ENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNR-ICRIGEGLDQA 86 (176)
T ss_dssp EECTTSCEEEECTTSCCCSC------CCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSC-CCEECSCHHHH
T ss_pred cCCcCCceEEEeeCCCCchh------HHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCc-ccccCcchhhc
Confidence 34566666677766554432 11112233666777776666655 4566666666 6666663 33444333 56
Q ss_pred CCccCEEecCCCCCCCCcch--hhhcCCCCceEeccCCcceecChh----hhcCCCcceEE
Q 038441 101 LKSFKILNLSSCSKLENVPE--NLGKVESLEELDISRTAIRQLPTS----IFLLKNLKAVD 155 (169)
Q Consensus 101 ~~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~----~~~l~~L~~L~ 155 (169)
+++|++|++++ +.+..+|. .+.++++|+.+++++|.+..+|.. +..+++|+.|+
T Consensus 87 l~~L~~L~L~~-N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld 146 (176)
T 1a9n_A 87 LPDLTELILTN-NSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 146 (176)
T ss_dssp CTTCCEEECCS-CCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred CCCCCEEECCC-CcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeC
Confidence 66677777766 44555555 566666677777777766666553 56666666666
No 102
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.59 E-value=3.3e-14 Score=109.25 Aligned_cols=38 Identities=13% Similarity=0.093 Sum_probs=19.2
Q ss_pred CCCCcEEeeCCccccccCchhhcCCCCccEEEecCCCCCC
Q 038441 2 LKFPSTLNLFGLLKFRLFPEIMGRMEHLLVLRLLGTAIRG 41 (169)
Q Consensus 2 l~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 41 (169)
++.|++|++++|. +..++. +..+++|++|++++|.+++
T Consensus 176 l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~ 213 (466)
T 1o6v_A 176 LTTLERLDISSNK-VSDISV-LAKLTNLESLIATNNQISD 213 (466)
T ss_dssp CTTCCEEECCSSC-CCCCGG-GGGCTTCSEEECCSSCCCC
T ss_pred CCCCCEEECcCCc-CCCChh-hccCCCCCEEEecCCcccc
Confidence 3456666666543 333332 4455555555555554443
No 103
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.59 E-value=3.5e-15 Score=97.80 Aligned_cols=124 Identities=19% Similarity=0.253 Sum_probs=100.9
Q ss_pred CCCcEEeeCCcccc-ccCchhhcCCCCccEEEecCCCCCCCCCCCCccccccCCCCccEEEeeCCcCcc-cccccccccc
Q 038441 3 KFPSTLNLFGLLKF-RLFPEIMGRMEHLLVLRLLGTAIRGLPICLKLEKFSKSMKSLTMLILDGTTIRE-LPLSVELLTG 80 (169)
Q Consensus 3 ~~l~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~-lp~~~~~~~~ 80 (169)
+.++.|++++|... ..+|+.+..+++|++|++++|.++++ ..+ ..+++|++|++++|.++. +|..+..+++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~------~~~-~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 89 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI------ANL-PKLNKLKKLELSDNRVSGGLEVLAEKCPN 89 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC------TTC-CCCTTCCEEECCSSCCCSCTHHHHHHCTT
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc------hhh-hcCCCCCEEECCCCcccchHHHHhhhCCC
Confidence 56899999998643 37888888999999999999877662 222 678899999999999997 6777778999
Q ss_pred eE-EEecccccCCccc--cccccCCccCEEecCCCCCCCCcch----hhhcCCCCceEeccC
Q 038441 81 LL-LNLKDWQYLESLP--STINGLKSFKILNLSSCSKLENVPE----NLGKVESLEELDISR 135 (169)
Q Consensus 81 L~-l~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~l~~L~~L~l~~ 135 (169)
|+ +++++|. +..++ ..+..+++|++|++++| .+...+. .+..+++|++|++++
T Consensus 90 L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 90 LTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCCC
Confidence 99 9999985 44443 67889999999999994 6666654 688999999999763
No 104
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.59 E-value=1.7e-15 Score=111.43 Aligned_cols=154 Identities=18% Similarity=0.204 Sum_probs=68.4
Q ss_pred CCCCcEEeeCCcccccc-CchhhcCCCCccEEEecCCCCCCC----------------CCCCCccc--cc---cCCCCcc
Q 038441 2 LKFPSTLNLFGLLKFRL-FPEIMGRMEHLLVLRLLGTAIRGL----------------PICLKLEK--FS---KSMKSLT 59 (169)
Q Consensus 2 l~~l~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~----------------~~~~~l~~--~~---~~~~~L~ 59 (169)
+++|++|++++|..... ++..+..+++|++|++++|.+++. ..|..++. ++ ..+++|+
T Consensus 92 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~ 171 (336)
T 2ast_B 92 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD 171 (336)
T ss_dssp CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred CCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCC
Confidence 34566666666542222 455555666666666666544320 00111211 11 3344455
Q ss_pred EEEeeCC-cCcc--ccccccccc-ceE-EEecccc--cC-CccccccccCCccCEEecCCCCCC-CCcchhhhcCCCCce
Q 038441 60 MLILDGT-TIRE--LPLSVELLT-GLL-LNLKDWQ--YL-ESLPSTINGLKSFKILNLSSCSKL-ENVPENLGKVESLEE 130 (169)
Q Consensus 60 ~L~l~~~-~~~~--lp~~~~~~~-~L~-l~l~~~~--~~-~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~ 130 (169)
+|++++| .++. ++..+..++ +|+ +++++|. .. ..++..+..+++|++|++++|..+ ...+..+..+++|++
T Consensus 172 ~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~ 251 (336)
T 2ast_B 172 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQH 251 (336)
T ss_dssp EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred EEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCE
Confidence 5555555 4442 333344444 555 5555442 11 122333344555555555554322 233344455555555
Q ss_pred EeccCCc-ce-ecChhhhcCCCcceEE
Q 038441 131 LDISRTA-IR-QLPTSIFLLKNLKAVD 155 (169)
Q Consensus 131 L~l~~n~-l~-~~~~~~~~l~~L~~L~ 155 (169)
|++++|. +. .....+..+++|+.|+
T Consensus 252 L~l~~~~~~~~~~~~~l~~~~~L~~L~ 278 (336)
T 2ast_B 252 LSLSRCYDIIPETLLELGEIPTLKTLQ 278 (336)
T ss_dssp EECTTCTTCCGGGGGGGGGCTTCCEEE
T ss_pred eeCCCCCCCCHHHHHHHhcCCCCCEEe
Confidence 5555553 21 1111234455555555
No 105
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.58 E-value=2.8e-14 Score=109.48 Aligned_cols=122 Identities=18% Similarity=0.275 Sum_probs=65.0
Q ss_pred CCCcEEeeCCccccccCchhhcCCCCccEEEecCCCCCCCCCCCCccccccCCCCccEEEeeCCcCcccccccccccceE
Q 038441 3 KFPSTLNLFGLLKFRLFPEIMGRMEHLLVLRLLGTAIRGLPICLKLEKFSKSMKSLTMLILDGTTIRELPLSVELLTGLL 82 (169)
Q Consensus 3 ~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~lp~~~~~~~~L~ 82 (169)
+.|++|++++|. ++.+| .+..+++|++|++++|.+++ +|....+|++|++++|.++.+| .++.+++|+
T Consensus 131 ~~L~~L~L~~n~-l~~lp-~~~~l~~L~~L~l~~N~l~~---------lp~~~~~L~~L~L~~n~l~~l~-~~~~l~~L~ 198 (454)
T 1jl5_A 131 PLLEYLGVSNNQ-LEKLP-ELQNSSFLKIIDVDNNSLKK---------LPDLPPSLEFIAAGNNQLEELP-ELQNLPFLT 198 (454)
T ss_dssp TTCCEEECCSSC-CSSCC-CCTTCTTCCEEECCSSCCSC---------CCCCCTTCCEEECCSSCCSSCC-CCTTCTTCC
T ss_pred CCCCEEECcCCC-CCCCc-ccCCCCCCCEEECCCCcCcc---------cCCCcccccEEECcCCcCCcCc-cccCCCCCC
Confidence 356666666643 44455 36667777777777755544 3323345666666666655554 355555666
Q ss_pred -EEecccccCCccccccccCCccCEEecCCCCCCCCcchhhhcCCCCceEeccCCcceecC
Q 038441 83 -LNLKDWQYLESLPSTINGLKSFKILNLSSCSKLENVPENLGKVESLEELDISRTAIRQLP 142 (169)
Q Consensus 83 -l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 142 (169)
+++++|. ...+|.. .++|++|++++| .+..+|. ++.+++|++|++++|.++.+|
T Consensus 199 ~L~l~~N~-l~~l~~~---~~~L~~L~l~~n-~l~~lp~-~~~l~~L~~L~l~~N~l~~l~ 253 (454)
T 1jl5_A 199 AIYADNNS-LKKLPDL---PLSLESIVAGNN-ILEELPE-LQNLPFLTTIYADNNLLKTLP 253 (454)
T ss_dssp EEECCSSC-CSSCCCC---CTTCCEEECCSS-CCSSCCC-CTTCTTCCEEECCSSCCSSCC
T ss_pred EEECCCCc-CCcCCCC---cCcccEEECcCC-cCCcccc-cCCCCCCCEEECCCCcCCccc
Confidence 6665552 2223321 135555555552 3334442 555555555555555555544
No 106
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.58 E-value=2e-14 Score=112.88 Aligned_cols=144 Identities=20% Similarity=0.218 Sum_probs=96.3
Q ss_pred CCCcEEeeCCccccccCchhhcCCCCccEEEecCCCCCCCCC-----------CCCccccccCCCCccEEEeeCCcCccc
Q 038441 3 KFPSTLNLFGLLKFRLFPEIMGRMEHLLVLRLLGTAIRGLPI-----------CLKLEKFSKSMKSLTMLILDGTTIREL 71 (169)
Q Consensus 3 ~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----------~~~l~~~~~~~~~L~~L~l~~~~~~~l 71 (169)
+.|++|++++|. ++.+| ..+++|++|++++|.+++++. .+.++.+|..+++|++|++++|.++.+
T Consensus 80 ~~L~~L~Ls~N~-l~~ip---~~l~~L~~L~Ls~N~l~~ip~l~~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~l~~l 155 (571)
T 3cvr_A 80 PQITVLEITQNA-LISLP---ELPASLEYLDACDNRLSTLPELPASLKHLDVDNNQLTMLPELPALLEYINADNNQLTML 155 (571)
T ss_dssp TTCSEEECCSSC-CSCCC---CCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCC
T ss_pred CCCCEEECcCCC-Ccccc---cccCCCCEEEccCCCCCCcchhhcCCCEEECCCCcCCCCCCcCccccEEeCCCCccCcC
Confidence 456777777753 55666 346677777777776665432 122333334456778888888887777
Q ss_pred ccccccccceE-EEecccccCCccccccccCCccCEEecCCCCCCCCcchhhhcCCCC-------ceEeccCCcceecCh
Q 038441 72 PLSVELLTGLL-LNLKDWQYLESLPSTINGLKSFKILNLSSCSKLENVPENLGKVESL-------EELDISRTAIRQLPT 143 (169)
Q Consensus 72 p~~~~~~~~L~-l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L-------~~L~l~~n~l~~~~~ 143 (169)
|. .+++|+ +++++| .+..+|. +. ++|++|++++ |.+..+|. +.. +| +.|++++|.++.+|.
T Consensus 156 p~---~l~~L~~L~Ls~N-~L~~lp~-l~--~~L~~L~Ls~-N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~ 224 (571)
T 3cvr_A 156 PE---LPTSLEVLSVRNN-QLTFLPE-LP--ESLEALDVST-NLLESLPA-VPV--RNHHSEETEIFFRCRENRITHIPE 224 (571)
T ss_dssp CC---CCTTCCEEECCSS-CCSCCCC-CC--TTCCEEECCS-SCCSSCCC-CC----------CCEEEECCSSCCCCCCG
T ss_pred CC---cCCCcCEEECCCC-CCCCcch-hh--CCCCEEECcC-CCCCchhh-HHH--hhhcccccceEEecCCCcceecCH
Confidence 66 456778 888887 3444666 44 7888888887 56667776 543 66 888999998888888
Q ss_pred hhhcCCCcceEEccccccccc
Q 038441 144 SIFLLKNLKAVDHYHLHHGIC 164 (169)
Q Consensus 144 ~~~~l~~L~~L~~~~l~~~~~ 164 (169)
.+..+++|+.|+ ++.|.+
T Consensus 225 ~l~~l~~L~~L~---L~~N~l 242 (571)
T 3cvr_A 225 NILSLDPTCTII---LEDNPL 242 (571)
T ss_dssp GGGGSCTTEEEE---CCSSSC
T ss_pred HHhcCCCCCEEE---eeCCcC
Confidence 787788888888 555554
No 107
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.58 E-value=6.9e-14 Score=110.97 Aligned_cols=31 Identities=26% Similarity=0.422 Sum_probs=18.8
Q ss_pred CCCCceEeccCCcceecChhhhcCCCcceEE
Q 038441 125 VESLEELDISRTAIRQLPTSIFLLKNLKAVD 155 (169)
Q Consensus 125 l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~ 155 (169)
+++|+.|++++|.++.+|..+..+++|+.|+
T Consensus 260 ~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~ 290 (622)
T 3g06_A 260 PSGLLSLSVYRNQLTRLPESLIHLSSETTVN 290 (622)
T ss_dssp CTTCCEEECCSSCCCSCCGGGGGSCTTCEEE
T ss_pred cccCcEEeCCCCCCCcCCHHHhhccccCEEE
Confidence 4455666666666666665566666666666
No 108
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.58 E-value=1.6e-16 Score=124.93 Aligned_cols=105 Identities=22% Similarity=0.295 Sum_probs=80.4
Q ss_pred CccEEEeeCCcCcccccccccccceE-EEecccccCCccccccccCCccCEEecCCCCCCCCcchhhhcCCCCceEeccC
Q 038441 57 SLTMLILDGTTIRELPLSVELLTGLL-LNLKDWQYLESLPSTINGLKSFKILNLSSCSKLENVPENLGKVESLEELDISR 135 (169)
Q Consensus 57 ~L~~L~l~~~~~~~lp~~~~~~~~L~-l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 135 (169)
.|+.|++++|.++.+|. ++.+++|+ +++++| .+..+|..++.+++|++|++++ |.+..+| .++++++|+.|++++
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~-N~l~~lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASD-NALENVD-GVANLPRLQELLLCN 517 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCS-SCCCCCG-GGTTCSSCCEEECCS
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcc-cccccchhhhcCCCCCEEECCC-CCCCCCc-ccCCCCCCcEEECCC
Confidence 47788888888888776 77888888 888887 4447777788888888888887 5666677 778888888888888
Q ss_pred Ccceec--ChhhhcCCCcceEEcccccccccccCC
Q 038441 136 TAIRQL--PTSIFLLKNLKAVDHYHLHHGICASLP 168 (169)
Q Consensus 136 n~l~~~--~~~~~~l~~L~~L~~~~l~~~~~~~l~ 168 (169)
|.++.+ |..+..+++|+.|+ ++.|.+..+|
T Consensus 518 N~l~~~~~p~~l~~l~~L~~L~---L~~N~l~~~~ 549 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCPRLVLLN---LQGNSLCQEE 549 (567)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEE---CTTSGGGGSS
T ss_pred CCCCCCCCcHHHhcCCCCCEEE---ecCCcCCCCc
Confidence 888876 77788888888888 5556665543
No 109
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.57 E-value=1.1e-14 Score=98.07 Aligned_cols=129 Identities=20% Similarity=0.306 Sum_probs=104.4
Q ss_pred CCCCcEEeeCCccccccCchhhcCC-CCccEEEecCCCCCCCCCCCCccccccCCCCccEEEeeCCcCccccccc-cccc
Q 038441 2 LKFPSTLNLFGLLKFRLFPEIMGRM-EHLLVLRLLGTAIRGLPICLKLEKFSKSMKSLTMLILDGTTIRELPLSV-ELLT 79 (169)
Q Consensus 2 l~~l~~L~l~~~~~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~lp~~~-~~~~ 79 (169)
+..++.|++++|. ++.++. +..+ ++|++|++++|.++++ ..+ ..+++|++|++++|.++.+|+.+ ..++
T Consensus 18 ~~~L~~L~l~~n~-l~~i~~-~~~~~~~L~~L~Ls~N~l~~~------~~l-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 88 (176)
T 1a9n_A 18 AVRDRELDLRGYK-IPVIEN-LGATLDQFDAIDFSDNEIRKL------DGF-PLLRRLKTLLVNNNRICRIGEGLDQALP 88 (176)
T ss_dssp TTSCEEEECTTSC-CCSCCC-GGGGTTCCSEEECCSSCCCEE------CCC-CCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred cCCceEEEeeCCC-CchhHH-hhhcCCCCCEEECCCCCCCcc------ccc-ccCCCCCEEECCCCcccccCcchhhcCC
Confidence 4678999999974 667765 4454 4999999999776652 122 67889999999999999988764 8899
Q ss_pred ceE-EEecccccCCcccc--ccccCCccCEEecCCCCCCCCcchh----hhcCCCCceEeccCCcceec
Q 038441 80 GLL-LNLKDWQYLESLPS--TINGLKSFKILNLSSCSKLENVPEN----LGKVESLEELDISRTAIRQL 141 (169)
Q Consensus 80 ~L~-l~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~----~~~l~~L~~L~l~~n~l~~~ 141 (169)
+|+ +++++| .+..+|. .+..+++|++|++++ +.+..+|.. +..+++|++++++.|...+.
T Consensus 89 ~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~-N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~~ 155 (176)
T 1a9n_A 89 DLTELILTNN-SLVELGDLDPLASLKSLTYLCILR-NPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKER 155 (176)
T ss_dssp TCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCS-SGGGGSTTHHHHHHHHCTTCSEETTEECCHHHH
T ss_pred CCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecC-CCCCCcHhHHHHHHHHCCccceeCCCcCCHHHH
Confidence 999 999998 5566776 788899999999998 566777774 88999999999999987643
No 110
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.57 E-value=3.3e-15 Score=109.99 Aligned_cols=84 Identities=23% Similarity=0.319 Sum_probs=67.1
Q ss_pred cCCC-CccEEEeeCC--cCc--ccccccccccceE-EEecccc-cCCccccccccCCccCEEecCCCCCCC-Ccchhhhc
Q 038441 53 KSMK-SLTMLILDGT--TIR--ELPLSVELLTGLL-LNLKDWQ-YLESLPSTINGLKSFKILNLSSCSKLE-NVPENLGK 124 (169)
Q Consensus 53 ~~~~-~L~~L~l~~~--~~~--~lp~~~~~~~~L~-l~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~ 124 (169)
..++ +|++|++++| .++ .++..+..+++|+ +++++|. .....+..+..+++|++|++++|..+. .....+.+
T Consensus 191 ~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~ 270 (336)
T 2ast_B 191 AHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGE 270 (336)
T ss_dssp HHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGG
T ss_pred HhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhc
Confidence 6677 9999999999 454 5677788899999 9999986 334556678899999999999975332 22235788
Q ss_pred CCCCceEeccCC
Q 038441 125 VESLEELDISRT 136 (169)
Q Consensus 125 l~~L~~L~l~~n 136 (169)
+++|+.|++++|
T Consensus 271 ~~~L~~L~l~~~ 282 (336)
T 2ast_B 271 IPTLKTLQVFGI 282 (336)
T ss_dssp CTTCCEEECTTS
T ss_pred CCCCCEEeccCc
Confidence 999999999999
No 111
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.57 E-value=3.3e-14 Score=111.68 Aligned_cols=126 Identities=27% Similarity=0.342 Sum_probs=71.6
Q ss_pred CCcEEeeCCccccccCchhhcCCCCccEEEecCCCCCCCCCCCCccccccCCCCccEEEeeCCcCcccccccccccceE-
Q 038441 4 FPSTLNLFGLLKFRLFPEIMGRMEHLLVLRLLGTAIRGLPICLKLEKFSKSMKSLTMLILDGTTIRELPLSVELLTGLL- 82 (169)
Q Consensus 4 ~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~lp~~~~~~~~L~- 82 (169)
.++.|++++|+ ++.+|..+ +++|++|++++|.++.++ ..+++|++|++++|.++.+|. ++. +|+
T Consensus 60 ~L~~L~Ls~n~-L~~lp~~l--~~~L~~L~Ls~N~l~~ip---------~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~ 124 (571)
T 3cvr_A 60 QFSELQLNRLN-LSSLPDNL--PPQITVLEITQNALISLP---------ELPASLEYLDACDNRLSTLPE-LPA--SLKH 124 (571)
T ss_dssp TCSEEECCSSC-CSCCCSCC--CTTCSEEECCSSCCSCCC---------CCCTTCCEEECCSSCCSCCCC-CCT--TCCE
T ss_pred CccEEEeCCCC-CCccCHhH--cCCCCEEECcCCCCcccc---------cccCCCCEEEccCCCCCCcch-hhc--CCCE
Confidence 78899999865 66788755 488999999997776543 234556666666666555555 333 555
Q ss_pred EEecccccCCccccccccCCccCEEecCCCCCCCCcchhhhcCCCCceEeccCCcceecChhhhcCCCcceEE
Q 038441 83 LNLKDWQYLESLPSTINGLKSFKILNLSSCSKLENVPENLGKVESLEELDISRTAIRQLPTSIFLLKNLKAVD 155 (169)
Q Consensus 83 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~ 155 (169)
+++++|. +..+|. .+++|++|++++ |.+..+|. .+++|++|++++|.++.+|. +. ++|+.|+
T Consensus 125 L~Ls~N~-l~~lp~---~l~~L~~L~Ls~-N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~ 186 (571)
T 3cvr_A 125 LDVDNNQ-LTMLPE---LPALLEYINADN-NQLTMLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALD 186 (571)
T ss_dssp EECCSSC-CSCCCC---CCTTCCEEECCS-SCCSCCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEE
T ss_pred EECCCCc-CCCCCC---cCccccEEeCCC-CccCcCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEE
Confidence 5555542 222443 344555555554 33333443 33444555555554444444 22 3444444
No 112
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.56 E-value=4.3e-15 Score=114.00 Aligned_cols=146 Identities=21% Similarity=0.295 Sum_probs=73.6
Q ss_pred CcEEeeCCccccccCchhhcCCCCccEEEecCCCCCCCCC-----------CCCccccccCCCCccEEEeeCCcCccccc
Q 038441 5 PSTLNLFGLLKFRLFPEIMGRMEHLLVLRLLGTAIRGLPI-----------CLKLEKFSKSMKSLTMLILDGTTIRELPL 73 (169)
Q Consensus 5 l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----------~~~l~~~~~~~~~L~~L~l~~~~~~~lp~ 73 (169)
+++|++++|. ++.+|. -.++|++|++++|.+++++. .+.++.++...++|++|++++|.++.+|
T Consensus 73 l~~L~l~~~~-l~~lp~---~~~~L~~L~l~~n~l~~lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~lp- 147 (454)
T 1jl5_A 73 AHELELNNLG-LSSLPE---LPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLP- 147 (454)
T ss_dssp CSEEECTTSC-CSCCCS---CCTTCSEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSSCC-
T ss_pred CCEEEecCCc-cccCCC---CcCCCCEEEccCCcCCccccccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCCCc-
Confidence 4555555543 444443 12455555555555544321 0112222222245666666666666555
Q ss_pred ccccccceE-EEecccccCCccccccccCCccCEEecCCCCCCCCcchhhhcCCCCceEeccCCcceecChhhhcCCCcc
Q 038441 74 SVELLTGLL-LNLKDWQYLESLPSTINGLKSFKILNLSSCSKLENVPENLGKVESLEELDISRTAIRQLPTSIFLLKNLK 152 (169)
Q Consensus 74 ~~~~~~~L~-l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~ 152 (169)
.++.+++|+ +++++|. ...+|.. ..+|++|++++ +.+..+| .++++++|++|++++|.++.+|... .+|+
T Consensus 148 ~~~~l~~L~~L~l~~N~-l~~lp~~---~~~L~~L~L~~-n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~ 218 (454)
T 1jl5_A 148 ELQNSSFLKIIDVDNNS-LKKLPDL---PPSLEFIAAGN-NQLEELP-ELQNLPFLTAIYADNNSLKKLPDLP---LSLE 218 (454)
T ss_dssp CCTTCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCS-SCCSSCC-CCTTCTTCCEEECCSSCCSSCCCCC---TTCC
T ss_pred ccCCCCCCCEEECCCCc-CcccCCC---cccccEEECcC-CcCCcCc-cccCCCCCCEEECCCCcCCcCCCCc---Cccc
Confidence 356666666 6666653 3334432 23566666665 3444455 4566666666666666666555422 3566
Q ss_pred eEEcccccccccccC
Q 038441 153 AVDHYHLHHGICASL 167 (169)
Q Consensus 153 ~L~~~~l~~~~~~~l 167 (169)
+|+ ++.+.+..+
T Consensus 219 ~L~---l~~n~l~~l 230 (454)
T 1jl5_A 219 SIV---AGNNILEEL 230 (454)
T ss_dssp EEE---CCSSCCSSC
T ss_pred EEE---CcCCcCCcc
Confidence 666 444444443
No 113
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.56 E-value=2e-14 Score=98.19 Aligned_cols=122 Identities=20% Similarity=0.274 Sum_probs=86.2
Q ss_pred cEEEecCCCCCCCCCCCCccccc-cCCCCccEEEeeCCcCcccccc--cccccceE-EEecccccCCccccccccCCccC
Q 038441 30 LVLRLLGTAIRGLPICLKLEKFS-KSMKSLTMLILDGTTIRELPLS--VELLTGLL-LNLKDWQYLESLPSTINGLKSFK 105 (169)
Q Consensus 30 ~~L~l~~n~l~~~~~~~~l~~~~-~~~~~L~~L~l~~~~~~~lp~~--~~~~~~L~-l~l~~~~~~~~~~~~~~~~~~L~ 105 (169)
+++++++|. ++.+| .-..+++.|++++|.++.+++. +..+++|+ +++++|......|..+..+++|+
T Consensus 11 ~~l~~s~~~---------l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 81 (192)
T 1w8a_A 11 TTVDCTGRG---------LKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQ 81 (192)
T ss_dssp TEEECTTSC---------CSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCC
T ss_pred CEEEcCCCC---------cCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCC
Confidence 577888744 34445 2233788888888888877653 77788888 88888755555566777888888
Q ss_pred EEecCCCCCCCCcc-hhhhcCCCCceEeccCCcceec-ChhhhcCCCcceEEccccccccc
Q 038441 106 ILNLSSCSKLENVP-ENLGKVESLEELDISRTAIRQL-PTSIFLLKNLKAVDHYHLHHGIC 164 (169)
Q Consensus 106 ~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~-~~~~~~l~~L~~L~~~~l~~~~~ 164 (169)
+|++++| .+..++ ..+.++++|++|++++|.++.+ |..+..+++|++|+ +.+|.|
T Consensus 82 ~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~---L~~N~l 138 (192)
T 1w8a_A 82 ELQLGEN-KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN---LASNPF 138 (192)
T ss_dssp EEECCSC-CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEE---CTTCCB
T ss_pred EEECCCC-cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEE---eCCCCc
Confidence 8888874 444444 4577888888888888888854 55777788888888 444544
No 114
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.56 E-value=1.6e-16 Score=109.08 Aligned_cols=146 Identities=21% Similarity=0.289 Sum_probs=112.4
Q ss_pred CcEEeeCCc-cccccCchhhcCCCCccEEEecCCCCCCCCCCCCccccccCCCCccEEEeeCCcCcccccccccccceE-
Q 038441 5 PSTLNLFGL-LKFRLFPEIMGRMEHLLVLRLLGTAIRGLPICLKLEKFSKSMKSLTMLILDGTTIRELPLSVELLTGLL- 82 (169)
Q Consensus 5 l~~L~l~~~-~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~lp~~~~~~~~L~- 82 (169)
++...+.+. ..++.+|..+..+++|++|++++|.+++++ .+ ..+++|++|++++|.++.+|..+..+++|+
T Consensus 25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~------~~-~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~ 97 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS------SL-SGMENLRILSLGRNLIKKIENLDAVADTLEE 97 (198)
T ss_dssp CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC------CH-HHHTTCCEEEEEEEEECSCSSHHHHHHHCSE
T ss_pred hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc------cc-ccCCCCCEEECCCCCcccccchhhcCCcCCE
Confidence 344455442 235556668999999999999997666531 11 567899999999999999988888889999
Q ss_pred EEecccccCCccccccccCCccCEEecCCCCCCCCcch--hhhcCCCCceEeccCCcceec-Ch----------hhhcCC
Q 038441 83 LNLKDWQYLESLPSTINGLKSFKILNLSSCSKLENVPE--NLGKVESLEELDISRTAIRQL-PT----------SIFLLK 149 (169)
Q Consensus 83 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~-~~----------~~~~l~ 149 (169)
+++++|. +..+| .+..+++|++|++++ +.+..++. .+..+++|+++++++|.+... |. .+..++
T Consensus 98 L~L~~N~-l~~l~-~~~~l~~L~~L~l~~-N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~ 174 (198)
T 1ds9_A 98 LWISYNQ-IASLS-GIEKLVNLRVLYMSN-NKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLP 174 (198)
T ss_dssp EEEEEEE-CCCHH-HHHHHHHSSEEEESE-EECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCS
T ss_pred EECcCCc-CCcCC-ccccCCCCCEEECCC-CcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCC
Confidence 9999984 44455 578899999999998 56766654 688999999999999998744 22 268899
Q ss_pred CcceEEccccc
Q 038441 150 NLKAVDHYHLH 160 (169)
Q Consensus 150 ~L~~L~~~~l~ 160 (169)
+|+.|+...++
T Consensus 175 ~L~~Ld~~~i~ 185 (198)
T 1ds9_A 175 NLKKLDGMPVD 185 (198)
T ss_dssp SCSEECCGGGT
T ss_pred CcEEECCcccC
Confidence 99999844443
No 115
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.56 E-value=2.9e-14 Score=116.71 Aligned_cols=149 Identities=19% Similarity=0.153 Sum_probs=111.8
Q ss_pred CCCCcEEeeCCccccccC-chhhcCCCCccEEEecCCCCCCCCCCCCccccccCCCCccEEEeeCCcCcc-cccc--ccc
Q 038441 2 LKFPSTLNLFGLLKFRLF-PEIMGRMEHLLVLRLLGTAIRGLPICLKLEKFSKSMKSLTMLILDGTTIRE-LPLS--VEL 77 (169)
Q Consensus 2 l~~l~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~-lp~~--~~~ 77 (169)
++.|++|++++|.....+ |..+..+++|++|++++|.+.++. -..+ ..+++|++|++++|.++. +|.. +..
T Consensus 47 l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~----p~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 121 (844)
T 3j0a_A 47 LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLH----PDAF-QGLFHLFELRLYFCGLSDAVLKDGYFRN 121 (844)
T ss_dssp CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEEC----TTSS-CSCSSCCCEECTTCCCSSCCSTTCCCSS
T ss_pred cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccC----HhHc-cCCcccCEeeCcCCCCCcccccCccccc
Confidence 678999999998777777 667899999999999997665410 0111 678889999999998884 5554 888
Q ss_pred ccceE-EEecccccCCccc-cccccCCccCEEecCCCCCCCCcchhhhcC--CCCceEeccCCcce-ecChhhhcCCC--
Q 038441 78 LTGLL-LNLKDWQYLESLP-STINGLKSFKILNLSSCSKLENVPENLGKV--ESLEELDISRTAIR-QLPTSIFLLKN-- 150 (169)
Q Consensus 78 ~~~L~-l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~l~~n~l~-~~~~~~~~l~~-- 150 (169)
+++|+ +++++|......+ ..+.++++|++|++++|......+..+..+ ++|+.|+++.|.+. ..|..+..+.+
T Consensus 122 L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 201 (844)
T 3j0a_A 122 LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPF 201 (844)
T ss_dssp CSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTT
T ss_pred cCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCcc
Confidence 99999 9999985554433 468889999999999855545566667666 78899999988887 44444444443
Q ss_pred ----cceEE
Q 038441 151 ----LKAVD 155 (169)
Q Consensus 151 ----L~~L~ 155 (169)
|+.|+
T Consensus 202 ~~~~L~~L~ 210 (844)
T 3j0a_A 202 RNMVLEILD 210 (844)
T ss_dssp TTCCBSEEB
T ss_pred ccCceeEEe
Confidence 78887
No 116
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.55 E-value=3e-15 Score=112.40 Aligned_cols=154 Identities=18% Similarity=0.189 Sum_probs=83.9
Q ss_pred CCCCcEEeeCCccccc----cCchhhcCCCCccEEEecCCCCCCC---------------------C-------CCCCc-
Q 038441 2 LKFPSTLNLFGLLKFR----LFPEIMGRMEHLLVLRLLGTAIRGL---------------------P-------ICLKL- 48 (169)
Q Consensus 2 l~~l~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~n~l~~~---------------------~-------~~~~l- 48 (169)
+++|++|++++|.... .++..+..+++|++|++++|.++.. + ..+.+
T Consensus 93 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~ 172 (386)
T 2ca6_A 93 CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE 172 (386)
T ss_dssp CTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCT
T ss_pred CCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCC
Confidence 4567777777755333 2555566677777777777655320 0 00111
Q ss_pred ----cccc---cCCCCccEEEeeCCcCc--c---c-ccccccccceE-EEecccccC----CccccccccCCccCEEecC
Q 038441 49 ----EKFS---KSMKSLTMLILDGTTIR--E---L-PLSVELLTGLL-LNLKDWQYL----ESLPSTINGLKSFKILNLS 110 (169)
Q Consensus 49 ----~~~~---~~~~~L~~L~l~~~~~~--~---l-p~~~~~~~~L~-l~l~~~~~~----~~~~~~~~~~~~L~~L~l~ 110 (169)
..+. ..+++|++|++++|.++ . + +..+..+++|+ +++++|... ..++..+..+++|++|+++
T Consensus 173 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~ 252 (386)
T 2ca6_A 173 NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLN 252 (386)
T ss_dssp GGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECT
T ss_pred cHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECC
Confidence 1111 23456666666666655 1 2 22455666666 666666432 3345555666667777766
Q ss_pred CCCCCCC----cchhhh--cCCCCceEeccCCccee-----cChhh-hcCCCcceEE
Q 038441 111 SCSKLEN----VPENLG--KVESLEELDISRTAIRQ-----LPTSI-FLLKNLKAVD 155 (169)
Q Consensus 111 ~~~~~~~----~~~~~~--~l~~L~~L~l~~n~l~~-----~~~~~-~~l~~L~~L~ 155 (169)
+|..... ++..+. .+++|++|++++|.++. +|..+ ..+++|+.|+
T Consensus 253 ~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~ 309 (386)
T 2ca6_A 253 DCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLE 309 (386)
T ss_dssp TCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEE
T ss_pred CCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEE
Confidence 6432211 234442 36667777777777665 56555 4466777777
No 117
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.54 E-value=4.6e-14 Score=104.77 Aligned_cols=139 Identities=21% Similarity=0.248 Sum_probs=86.2
Q ss_pred CCCcEEeeCCccccccCch-hhcCCCCccEEEecCCCCCC-CC----------------CCCCccccc----cCCCCccE
Q 038441 3 KFPSTLNLFGLLKFRLFPE-IMGRMEHLLVLRLLGTAIRG-LP----------------ICLKLEKFS----KSMKSLTM 60 (169)
Q Consensus 3 ~~l~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~-~~----------------~~~~l~~~~----~~~~~L~~ 60 (169)
.++++|+++++ .++.+|+ .|..+++|++|++++|.+.+ ++ .++.++.++ ..+++|++
T Consensus 30 ~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~ 108 (350)
T 4ay9_X 30 RNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY 108 (350)
T ss_dssp TTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCE
T ss_pred CCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccc
Confidence 46899999985 5777775 47889999999999998643 21 134455554 55778888
Q ss_pred EEeeCCcCcccccc-cccccc--------------------------eE-EEecccccCCccccccccCCccCEEecCCC
Q 038441 61 LILDGTTIRELPLS-VELLTG--------------------------LL-LNLKDWQYLESLPSTINGLKSFKILNLSSC 112 (169)
Q Consensus 61 L~l~~~~~~~lp~~-~~~~~~--------------------------L~-l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 112 (169)
|++++|.++.+|+. +..... ++ +++++| .+..++..++...+|+++++.++
T Consensus 109 L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N-~i~~i~~~~f~~~~L~~l~l~~~ 187 (350)
T 4ay9_X 109 LLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQEIHNSAFNGTQLDELNLSDN 187 (350)
T ss_dssp EEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-CCCEECTTSSTTEEEEEEECTTC
T ss_pred ccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccc-cccCCChhhccccchhHHhhccC
Confidence 88888877655432 222223 34 444443 33334444444455555555555
Q ss_pred CCCCCcch-hhhcCCCCceEeccCCcceecCh
Q 038441 113 SKLENVPE-NLGKVESLEELDISRTAIRQLPT 143 (169)
Q Consensus 113 ~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~ 143 (169)
+.++.+|. .|.++++|++|++++|+++.+|.
T Consensus 188 n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~ 219 (350)
T 4ay9_X 188 NNLEELPNDVFHGASGPVILDISRTRIHSLPS 219 (350)
T ss_dssp TTCCCCCTTTTTTEECCSEEECTTSCCCCCCS
T ss_pred CcccCCCHHHhccCcccchhhcCCCCcCccCh
Confidence 55555554 34566666666666666666655
No 118
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.54 E-value=7.9e-15 Score=118.33 Aligned_cols=122 Identities=20% Similarity=0.286 Sum_probs=93.7
Q ss_pred cccCchhhcCCCCccEEEecCCCCCCCCCCCCccccccCCCCccEEEeeCCcCcccccccccccceE-EEecccccCCcc
Q 038441 16 FRLFPEIMGRMEHLLVLRLLGTAIRGLPICLKLEKFSKSMKSLTMLILDGTTIRELPLSVELLTGLL-LNLKDWQYLESL 94 (169)
Q Consensus 16 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~lp~~~~~~~~L~-l~l~~~~~~~~~ 94 (169)
+...++.+..++.|++|++++|.+..++. .+ ..+++|++|++++|.++.+|..++.+++|+ |++++|. +..+
T Consensus 213 ~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~-----~~-~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~l 285 (727)
T 4b8c_D 213 MVMPKDSKYDDQLWHALDLSNLQIFNISA-----NI-FKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSL 285 (727)
T ss_dssp ---------CCCCCCEEECTTSCCSCCCG-----GG-GGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSC
T ss_pred eecChhhhccCCCCcEEECCCCCCCCCCh-----hh-cCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCcc
Confidence 34456668889999999999966554221 01 467889999999999999998899999999 9999985 4478
Q ss_pred ccccccCCccCEEecCCCCCCCCcchhhhcCCCCceEeccCCcce-ecChhh
Q 038441 95 PSTINGLKSFKILNLSSCSKLENVPENLGKVESLEELDISRTAIR-QLPTSI 145 (169)
Q Consensus 95 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~ 145 (169)
|..++.+++|++|++++ |.+..+|..|+++++|++|++++|.++ .+|..+
T Consensus 286 p~~~~~l~~L~~L~L~~-N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 286 PAELGSCFQLKYFYFFD-NMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp CSSGGGGTTCSEEECCS-SCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred ChhhcCCCCCCEEECCC-CCCCccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 88899999999999998 577889988999999999999999988 344443
No 119
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.53 E-value=1.2e-13 Score=92.96 Aligned_cols=126 Identities=21% Similarity=0.299 Sum_probs=92.3
Q ss_pred cEEeeCCccccccCchhhcCCCCccEEEecCCCCCCCCCCCCccccccCCCCccEEEeeCCcCcccccc-cccccceE-E
Q 038441 6 STLNLFGLLKFRLFPEIMGRMEHLLVLRLLGTAIRGLPICLKLEKFSKSMKSLTMLILDGTTIRELPLS-VELLTGLL-L 83 (169)
Q Consensus 6 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~lp~~-~~~~~~L~-l 83 (169)
+.++++++ .++.+|..+ .+++++|++++|.+++++. ..+ ..+++|++|++++|.++.+++. +..+++|+ +
T Consensus 10 ~~l~~~~~-~l~~~p~~~--~~~l~~L~l~~n~l~~~~~----~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 81 (177)
T 2o6r_A 10 TEIRCNSK-GLTSVPTGI--PSSATRLELESNKLQSLPH----GVF-DKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTIL 81 (177)
T ss_dssp TEEECCSS-CCSSCCTTC--CTTCSEEECCSSCCCCCCT----TTT-TTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CEEEecCC-CCccCCCCC--CCCCcEEEeCCCcccEeCH----HHh-cCcccccEEECCCCcceEeChhHccCCCccCEE
Confidence 45677663 467777543 4789999999976655221 011 5678899999999999988765 67888999 9
Q ss_pred EecccccCCccccccccCCccCEEecCCCCCCCCcchh-hhcCCCCceEeccCCccee
Q 038441 84 NLKDWQYLESLPSTINGLKSFKILNLSSCSKLENVPEN-LGKVESLEELDISRTAIRQ 140 (169)
Q Consensus 84 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~ 140 (169)
++++|......+..+..+++|++|++++ +.+..+|.. +..+++|+++++++|.+..
T Consensus 82 ~l~~N~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 82 YLHENKLQSLPNGVFDKLTQLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ECCCCCccccCHHHhhCCcccCEEECcC-CcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 9998844433334567889999999998 466667654 5778999999999998873
No 120
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.53 E-value=8e-15 Score=110.06 Aligned_cols=64 Identities=17% Similarity=0.185 Sum_probs=35.0
Q ss_pred CCCCcEEeeCCcc--ccc-cCchh-------hcCCCCccEEEecCCCCCCCCCCCCccccc---cCCCCccEEEeeCCcC
Q 038441 2 LKFPSTLNLFGLL--KFR-LFPEI-------MGRMEHLLVLRLLGTAIRGLPICLKLEKFS---KSMKSLTMLILDGTTI 68 (169)
Q Consensus 2 l~~l~~L~l~~~~--~~~-~~~~~-------~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~---~~~~~L~~L~l~~~~~ 68 (169)
+++|++|++++|. .+. .+|.. +..+++|++|++++|.+++ .....++ ..+++|++|++++|.+
T Consensus 59 ~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~----~~~~~l~~~l~~~~~L~~L~L~~n~l 134 (386)
T 2ca6_A 59 KKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP----TAQEPLIDFLSKHTPLEHLYLHNNGL 134 (386)
T ss_dssp CTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT----TTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred CCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCH----HHHHHHHHHHHhCCCCCEEECcCCCC
Confidence 4567777777752 121 23333 3567888888888877765 2222222 3344555555555554
Q ss_pred c
Q 038441 69 R 69 (169)
Q Consensus 69 ~ 69 (169)
+
T Consensus 135 ~ 135 (386)
T 2ca6_A 135 G 135 (386)
T ss_dssp H
T ss_pred C
Confidence 4
No 121
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.53 E-value=1.1e-13 Score=94.71 Aligned_cols=122 Identities=19% Similarity=0.255 Sum_probs=96.6
Q ss_pred cEEEecCCCCCCCCCCCCccccc-cCCCCccEEEeeCCcCcccccccccccceE-EEecccccCCccccccccCCccCEE
Q 038441 30 LVLRLLGTAIRGLPICLKLEKFS-KSMKSLTMLILDGTTIRELPLSVELLTGLL-LNLKDWQYLESLPSTINGLKSFKIL 107 (169)
Q Consensus 30 ~~L~l~~n~l~~~~~~~~l~~~~-~~~~~L~~L~l~~~~~~~lp~~~~~~~~L~-l~l~~~~~~~~~~~~~~~~~~L~~L 107 (169)
+++++++| .++.+| .-.++++.|++++|.++.+|..+..+++|+ +++++|......+..+..+++|++|
T Consensus 13 ~~l~~~~~---------~l~~ip~~~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L 83 (193)
T 2wfh_A 13 TVVRCSNK---------GLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTL 83 (193)
T ss_dssp TEEECTTS---------CCSSCCSCCCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CEEEcCCC---------CCCcCCCCCCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEE
Confidence 57888884 444555 334679999999999999998899999999 9999985554445678889999999
Q ss_pred ecCCCCCCCCcc-hhhhcCCCCceEeccCCcceecCh-hhhcCCCcceEEccccccccc
Q 038441 108 NLSSCSKLENVP-ENLGKVESLEELDISRTAIRQLPT-SIFLLKNLKAVDHYHLHHGIC 164 (169)
Q Consensus 108 ~l~~~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~~~~l~~~~~ 164 (169)
++++ +.+..++ ..+.++++|++|++++|.++.+|. .+..+++|+.|+ +.+|.|
T Consensus 84 ~Ls~-N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~---L~~N~~ 138 (193)
T 2wfh_A 84 ILSY-NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLA---IGANPL 138 (193)
T ss_dssp ECCS-SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE---CCSSCE
T ss_pred ECCC-CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEE---eCCCCe
Confidence 9998 4555554 568899999999999999998877 578889999998 555544
No 122
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.51 E-value=2.7e-13 Score=107.62 Aligned_cols=144 Identities=23% Similarity=0.244 Sum_probs=71.8
Q ss_pred CCCcEEeeCCccccccCchhhcCCCCccEEEecCCCCCCCCC-----------CCCccccccCCCCccEEEeeCCcCccc
Q 038441 3 KFPSTLNLFGLLKFRLFPEIMGRMEHLLVLRLLGTAIRGLPI-----------CLKLEKFSKSMKSLTMLILDGTTIREL 71 (169)
Q Consensus 3 ~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----------~~~l~~~~~~~~~L~~L~l~~~~~~~l 71 (169)
++|+.|++++|. ++.+|. .+++|++|++++|.+++++. .+.++.+|..+++|+.|++++|.++.+
T Consensus 121 ~~L~~L~L~~N~-l~~lp~---~l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l 196 (622)
T 3g06_A 121 SGLCKLWIFGNQ-LTSLPV---LPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASL 196 (622)
T ss_dssp TTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCC
T ss_pred CCcCEEECCCCC-CCcCCC---CCCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCC
Confidence 445555555532 444443 23566666666665555321 122223333345566666666666655
Q ss_pred ccccccccceE-EEecccccCCccccccccCCccCEEecCCCCCCCCcchhhhcCCCCceEeccCCcceecChhhhcCCC
Q 038441 72 PLSVELLTGLL-LNLKDWQYLESLPSTINGLKSFKILNLSSCSKLENVPENLGKVESLEELDISRTAIRQLPTSIFLLKN 150 (169)
Q Consensus 72 p~~~~~~~~L~-l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~ 150 (169)
|..+ ++|+ +++++| .+..+|. .+++|++|++++ +.+..+| ..+++|+.|++++|.++.+|. .+++
T Consensus 197 ~~~~---~~L~~L~L~~N-~l~~l~~---~~~~L~~L~Ls~-N~L~~lp---~~l~~L~~L~Ls~N~L~~lp~---~~~~ 262 (622)
T 3g06_A 197 PTLP---SELYKLWAYNN-RLTSLPA---LPSGLKELIVSG-NRLTSLP---VLPSELKELMVSGNRLTSLPM---LPSG 262 (622)
T ss_dssp CCCC---TTCCEEECCSS-CCSSCCC---CCTTCCEEECCS-SCCSCCC---CCCTTCCEEECCSSCCSCCCC---CCTT
T ss_pred CCcc---chhhEEECcCC-cccccCC---CCCCCCEEEccC-CccCcCC---CCCCcCcEEECCCCCCCcCCc---cccc
Confidence 5432 3455 555554 3333332 234566666655 3444454 334556666666666665554 3455
Q ss_pred cceEEcccccccccccC
Q 038441 151 LKAVDHYHLHHGICASL 167 (169)
Q Consensus 151 L~~L~~~~l~~~~~~~l 167 (169)
|+.|+ ++.|.+..+
T Consensus 263 L~~L~---Ls~N~L~~l 276 (622)
T 3g06_A 263 LLSLS---VYRNQLTRL 276 (622)
T ss_dssp CCEEE---CCSSCCCSC
T ss_pred CcEEe---CCCCCCCcC
Confidence 55665 333444443
No 123
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.51 E-value=1.1e-13 Score=108.84 Aligned_cols=118 Identities=21% Similarity=0.240 Sum_probs=98.7
Q ss_pred CccEEEecCCCCCCCCCCCCccccccCCCCccEEEeeCCcCcccccccccccceE-EEecccccCCccccccccCCccCE
Q 038441 28 HLLVLRLLGTAIRGLPICLKLEKFSKSMKSLTMLILDGTTIRELPLSVELLTGLL-LNLKDWQYLESLPSTINGLKSFKI 106 (169)
Q Consensus 28 ~L~~L~l~~n~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~lp~~~~~~~~L~-l~l~~~~~~~~~~~~~~~~~~L~~ 106 (169)
.|+.|++++|.++++| .+ ..+++|+.|++++|.++.+|..++.+++|+ +++++|. +..+| .+..+++|++
T Consensus 442 ~L~~L~Ls~n~l~~lp------~~-~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~l~~l~~L~~ 512 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLC------HL-EQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-LENVD-GVANLPRLQE 512 (567)
T ss_dssp TCSEEECTTSCCSSCC------CG-GGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCCG-GGTTCSSCCE
T ss_pred CceEEEecCCCCCCCc------Cc-cccccCcEeecCcccccccchhhhcCCCCCEEECCCCC-CCCCc-ccCCCCCCcE
Confidence 5889999997776532 11 667899999999999999999999999999 9999984 44577 7899999999
Q ss_pred EecCCCCCCCCc--chhhhcCCCCceEeccCCcceecChh----hhcCCCcceEE
Q 038441 107 LNLSSCSKLENV--PENLGKVESLEELDISRTAIRQLPTS----IFLLKNLKAVD 155 (169)
Q Consensus 107 L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~l~~L~~L~ 155 (169)
|++++ |.+..+ |..++.+++|+.|++++|.++.+|.. +..+++|+.|+
T Consensus 513 L~Ls~-N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 513 LLLCN-NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp EECCS-SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred EECCC-CCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 99998 566666 88999999999999999999977653 34578888886
No 124
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.48 E-value=5.2e-14 Score=104.89 Aligned_cols=37 Identities=14% Similarity=0.047 Sum_probs=19.2
Q ss_pred CCcEEeeCCccccccCc-----hhhcCCC-CccEEEecCCCCCC
Q 038441 4 FPSTLNLFGLLKFRLFP-----EIMGRME-HLLVLRLLGTAIRG 41 (169)
Q Consensus 4 ~l~~L~l~~~~~~~~~~-----~~~~~l~-~L~~L~l~~n~l~~ 41 (169)
+|++|++++|. ++..+ ..+..++ +|++|++++|.+++
T Consensus 23 ~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 65 (362)
T 3goz_A 23 GVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGNSLGF 65 (362)
T ss_dssp TCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGG
T ss_pred CceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCCCCCH
Confidence 35666666654 33332 3444555 56666666655443
No 125
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.47 E-value=7e-13 Score=89.21 Aligned_cols=123 Identities=27% Similarity=0.374 Sum_probs=92.0
Q ss_pred ccEEEecCCCCCCCCCCCCccccc-cCCCCccEEEeeCCcCcccccc-cccccceE-EEecccccCCccc-cccccCCcc
Q 038441 29 LLVLRLLGTAIRGLPICLKLEKFS-KSMKSLTMLILDGTTIRELPLS-VELLTGLL-LNLKDWQYLESLP-STINGLKSF 104 (169)
Q Consensus 29 L~~L~l~~n~l~~~~~~~~l~~~~-~~~~~L~~L~l~~~~~~~lp~~-~~~~~~L~-l~l~~~~~~~~~~-~~~~~~~~L 104 (169)
.+.++++++ .++.+| ...++++.|++++|.++.+++. +..+++|+ +++++|.. ..++ ..+..+++|
T Consensus 9 ~~~l~~~~~---------~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L 78 (177)
T 2o6r_A 9 GTEIRCNSK---------GLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQI-QSLPDGVFDKLTKL 78 (177)
T ss_dssp TTEEECCSS---------CCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC-CCCCTTTTTTCTTC
T ss_pred CCEEEecCC---------CCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcc-eEeChhHccCCCcc
Confidence 467788874 444455 3446889999999998887665 67888999 99998744 4444 456788999
Q ss_pred CEEecCCCCCCCCcch-hhhcCCCCceEeccCCcceecChh-hhcCCCcceEEcccccccccc
Q 038441 105 KILNLSSCSKLENVPE-NLGKVESLEELDISRTAIRQLPTS-IFLLKNLKAVDHYHLHHGICA 165 (169)
Q Consensus 105 ~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~~~~l~~~~~~ 165 (169)
++|++++ +.+..++. .+..+++|++|++++|.++.+|.. +..+++|++|+ +.+|.|.
T Consensus 79 ~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~---l~~N~~~ 137 (177)
T 2o6r_A 79 TILYLHE-NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIW---LHTNPWD 137 (177)
T ss_dssp CEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE---CCSSCBC
T ss_pred CEEECCC-CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEE---ecCCCee
Confidence 9999998 45556654 467889999999999999988774 57788899998 5555543
No 126
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.45 E-value=2.7e-13 Score=101.00 Aligned_cols=157 Identities=16% Similarity=0.125 Sum_probs=108.0
Q ss_pred CCcEEeeCCccccccCchhhcCC-----CCccEEEecCCCCCCCCCCCCccccc---cCC-CCccEEEeeCCcCcccccc
Q 038441 4 FPSTLNLFGLLKFRLFPEIMGRM-----EHLLVLRLLGTAIRGLPICLKLEKFS---KSM-KSLTMLILDGTTIRELPLS 74 (169)
Q Consensus 4 ~l~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~~~~l~~~~---~~~-~~L~~L~l~~~~~~~lp~~ 74 (169)
.|++|++++|..-...+..+..+ ++|++|++++|.+++ .....+. ... ++|++|++++|.++..+..
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~----~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~ 127 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSY----KSSDELVKTLAAIPFTITVLDLGWNDFSSKSSS 127 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG----SCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH
T ss_pred ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCCh----HHHHHHHHHHHhCCCCccEEECcCCcCCcHHHH
Confidence 79999999986444445555554 899999999977765 2222221 333 7899999999999866442
Q ss_pred -cc----c-ccceE-EEecccccCC----ccccccccCC-ccCEEecCCCCCCCCcchh----hhcC-CCCceEeccCCc
Q 038441 75 -VE----L-LTGLL-LNLKDWQYLE----SLPSTINGLK-SFKILNLSSCSKLENVPEN----LGKV-ESLEELDISRTA 137 (169)
Q Consensus 75 -~~----~-~~~L~-l~l~~~~~~~----~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~----~~~l-~~L~~L~l~~n~ 137 (169)
+. . .++|+ +++++|.... .++..+...+ +|++|++++|......+.. +... ++|++|++++|.
T Consensus 128 ~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 207 (362)
T 3goz_A 128 EFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANL 207 (362)
T ss_dssp HHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred HHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC
Confidence 32 3 25899 9999985543 2334445555 8999999995443444433 4445 599999999999
Q ss_pred cee-----cChhhhcC-CCcceEEcccccccccccC
Q 038441 138 IRQ-----LPTSIFLL-KNLKAVDHYHLHHGICASL 167 (169)
Q Consensus 138 l~~-----~~~~~~~l-~~L~~L~~~~l~~~~~~~l 167 (169)
+.. ++..+... ++|++|+ ++.+.+...
T Consensus 208 i~~~~~~~l~~~l~~~~~~L~~L~---Ls~N~l~~~ 240 (362)
T 3goz_A 208 LGLKSYAELAYIFSSIPNHVVSLN---LCLNCLHGP 240 (362)
T ss_dssp GGGSCHHHHHHHHHHSCTTCCEEE---CCSSCCCCC
T ss_pred CChhHHHHHHHHHhcCCCCceEEE---CcCCCCCcH
Confidence 986 66666664 5899999 555666543
No 127
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.43 E-value=1.4e-12 Score=96.77 Aligned_cols=90 Identities=18% Similarity=0.191 Sum_probs=48.7
Q ss_pred cccccCchhhcCCCCccEEEecCCCCCCCCCCCCccccccCCCCccEEEeeCCcCc-ccccc-cccccceE--EEecccc
Q 038441 14 LKFRLFPEIMGRMEHLLVLRLLGTAIRGLPICLKLEKFSKSMKSLTMLILDGTTIR-ELPLS-VELLTGLL--LNLKDWQ 89 (169)
Q Consensus 14 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~-~lp~~-~~~~~~L~--l~l~~~~ 89 (169)
+.++.+|..+ .+++++|++++|.++.++.- .+ .++++|++|++++|.+. .+|.. +..++++. +.+..|
T Consensus 19 ~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~----~f-~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N- 90 (350)
T 4ay9_X 19 SKVTEIPSDL--PRNAIELRFVLTKLRVIQKG----AF-SGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN- 90 (350)
T ss_dssp TTCCSCCTTC--CTTCSEEEEESCCCSEECTT----SS-TTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET-
T ss_pred CCCCccCcCc--CCCCCEEEccCCcCCCcCHH----HH-cCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC-
Confidence 4578888765 46899999999666543210 00 45566777777766653 34432 44444443 223333
Q ss_pred cCCcc-ccccccCCccCEEecCC
Q 038441 90 YLESL-PSTINGLKSFKILNLSS 111 (169)
Q Consensus 90 ~~~~~-~~~~~~~~~L~~L~l~~ 111 (169)
.+..+ +..+..+++|++|++++
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~l~~ 113 (350)
T 4ay9_X 91 NLLYINPEAFQNLPNLQYLLISN 113 (350)
T ss_dssp TCCEECTTSBCCCTTCCEEEEEE
T ss_pred cccccCchhhhhccccccccccc
Confidence 23323 33444555555555544
No 128
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.39 E-value=2e-12 Score=86.99 Aligned_cols=104 Identities=16% Similarity=0.231 Sum_probs=82.4
Q ss_pred ccEEEecCCCCCCCCCCCCccccc-cCCCCccEEEeeCCcCcccc-cccccccceE-EEecccccCCcccc-ccccCCcc
Q 038441 29 LLVLRLLGTAIRGLPICLKLEKFS-KSMKSLTMLILDGTTIRELP-LSVELLTGLL-LNLKDWQYLESLPS-TINGLKSF 104 (169)
Q Consensus 29 L~~L~l~~n~l~~~~~~~~l~~~~-~~~~~L~~L~l~~~~~~~lp-~~~~~~~~L~-l~l~~~~~~~~~~~-~~~~~~~L 104 (169)
-+.+++++|. ++.+| .-.+++++|++++|.++.++ ..+..+++|+ +++++| .+..+|. .+..+++|
T Consensus 14 ~~~l~~~~n~---------l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L 83 (174)
T 2r9u_A 14 QTLVNCQNIR---------LASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQL 83 (174)
T ss_dssp SSEEECCSSC---------CSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred CcEEEeCCCC---------CCccCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchh
Confidence 3688999844 44555 33478999999999999874 4588999999 999998 4555665 45789999
Q ss_pred CEEecCCCCCCCCcchh-hhcCCCCceEeccCCcceecCh
Q 038441 105 KILNLSSCSKLENVPEN-LGKVESLEELDISRTAIRQLPT 143 (169)
Q Consensus 105 ~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~ 143 (169)
++|++++ |.+..+|.. +..+++|++|++++|.+...+.
T Consensus 84 ~~L~L~~-N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 84 TQLDLND-NHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CEEECCS-SCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred hEEECCC-CccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 9999998 567777764 8899999999999999885554
No 129
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.38 E-value=1.2e-13 Score=105.50 Aligned_cols=81 Identities=16% Similarity=0.041 Sum_probs=40.2
Q ss_pred CCcEEeeCCcccccc----CchhhcCCCCccEEEecCCCCCCCCCCCCccccc----cCCCCccEEEeeCCcCcc-----
Q 038441 4 FPSTLNLFGLLKFRL----FPEIMGRMEHLLVLRLLGTAIRGLPICLKLEKFS----KSMKSLTMLILDGTTIRE----- 70 (169)
Q Consensus 4 ~l~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~----~~~~~L~~L~l~~~~~~~----- 70 (169)
.|++|++++|..... ++..+..+++|++|++++|.+++ ..+..+. ...++|++|++++|.++.
T Consensus 200 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~----~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 275 (461)
T 1z7x_W 200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD----VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGD 275 (461)
T ss_dssp CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH----HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHH
T ss_pred CceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh----HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHH
Confidence 566666666532221 34445556666666666654433 1111111 234556666666665553
Q ss_pred cccccccccceE-EEeccc
Q 038441 71 LPLSVELLTGLL-LNLKDW 88 (169)
Q Consensus 71 lp~~~~~~~~L~-l~l~~~ 88 (169)
++..+..+++|+ +++++|
T Consensus 276 l~~~l~~~~~L~~L~Ls~n 294 (461)
T 1z7x_W 276 LCRVLRAKESLKELSLAGN 294 (461)
T ss_dssp HHHHHHHCTTCCEEECTTC
T ss_pred HHHHHhhCCCcceEECCCC
Confidence 344444455555 555554
No 130
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.37 E-value=2.5e-12 Score=86.48 Aligned_cols=105 Identities=22% Similarity=0.297 Sum_probs=79.7
Q ss_pred cEEeeCCccccccCchhhcCCCCccEEEecCCCCCCCCCCCCccccccCCCCccEEEeeCCcCcccccc-cccccceE-E
Q 038441 6 STLNLFGLLKFRLFPEIMGRMEHLLVLRLLGTAIRGLPICLKLEKFSKSMKSLTMLILDGTTIRELPLS-VELLTGLL-L 83 (169)
Q Consensus 6 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~lp~~-~~~~~~L~-l 83 (169)
+.++++++ .++.+|..+ .++|++|++++|.+++++. ..+ ..+++|++|++++|.++.+|+. +..+++|+ +
T Consensus 15 ~~l~~~~n-~l~~iP~~~--~~~L~~L~Ls~N~l~~~~~----~~~-~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L 86 (174)
T 2r9u_A 15 TLVNCQNI-RLASVPAGI--PTDKQRLWLNNNQITKLEP----GVF-DHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQL 86 (174)
T ss_dssp SEEECCSS-CCSSCCSCC--CTTCSEEECCSSCCCCCCT----TTT-TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cEEEeCCC-CCCccCCCc--CCCCcEEEeCCCCccccCH----HHh-cCCcCCCEEECCCCCCCccChhHhCCcchhhEE
Confidence 46777774 578888765 3889999999977765311 011 6788999999999999999876 57899999 9
Q ss_pred EecccccCCcccc-ccccCCccCEEecCCCCCCCCcch
Q 038441 84 NLKDWQYLESLPS-TINGLKSFKILNLSSCSKLENVPE 120 (169)
Q Consensus 84 ~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~ 120 (169)
++++| .+..++. .+..+++|++|++++ |.+...+.
T Consensus 87 ~L~~N-~l~~l~~~~~~~l~~L~~L~L~~-N~~~c~~~ 122 (174)
T 2r9u_A 87 DLNDN-HLKSIPRGAFDNLKSLTHIYLYN-NPWDCECR 122 (174)
T ss_dssp ECCSS-CCCCCCTTTTTTCTTCSEEECCS-SCBCTTBG
T ss_pred ECCCC-ccceeCHHHhccccCCCEEEeCC-CCcccccc
Confidence 99998 4555655 578899999999998 55555544
No 131
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.36 E-value=1.6e-13 Score=104.95 Aligned_cols=147 Identities=16% Similarity=0.124 Sum_probs=63.0
Q ss_pred CCCcEEeeCCccccccC-----chh-hcCCCCccEEEecCCCCCCCCCCCCccccc---cCCCCccEEEeeCCcCccc-c
Q 038441 3 KFPSTLNLFGLLKFRLF-----PEI-MGRMEHLLVLRLLGTAIRGLPICLKLEKFS---KSMKSLTMLILDGTTIREL-P 72 (169)
Q Consensus 3 ~~l~~L~l~~~~~~~~~-----~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~---~~~~~L~~L~l~~~~~~~l-p 72 (169)
++|++|++++|. ++.. ++. +..+++|++|++++|.+++ .....++ ..+++|++|++++|.++.. +
T Consensus 227 ~~L~~L~Ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~----~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 301 (461)
T 1z7x_W 227 ASLRELALGSNK-LGDVGMAELCPGLLHPSSRLRTLWIWECGITA----KGCGDLCRVLRAKESLKELSLAGNELGDEGA 301 (461)
T ss_dssp TTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH----HHHHHHHHHHHHCTTCCEEECTTCCCHHHHH
T ss_pred CCccEEeccCCc-CChHHHHHHHHHHhcCCCCceEEECcCCCCCH----HHHHHHHHHHhhCCCcceEECCCCCCchHHH
Confidence 556666666653 2221 111 1235666666666654443 1111122 2345555555555554421 1
Q ss_pred ccccc-----ccceE-EEecccccCCc----cccccccCCccCEEecCCCCCCCC-cchhhhc-----CCCCceEeccCC
Q 038441 73 LSVEL-----LTGLL-LNLKDWQYLES----LPSTINGLKSFKILNLSSCSKLEN-VPENLGK-----VESLEELDISRT 136 (169)
Q Consensus 73 ~~~~~-----~~~L~-l~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~-----l~~L~~L~l~~n 136 (169)
..+.. .++|+ +++++|..... ++..+..+++|++|++++| .+.. .+..+.. .++|++|++++|
T Consensus 302 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 380 (461)
T 1z7x_W 302 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADC 380 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCC
Confidence 11111 13455 55555432221 2233344455555555543 2221 1122211 345555555555
Q ss_pred cce-----ecChhhhcCCCcceEE
Q 038441 137 AIR-----QLPTSIFLLKNLKAVD 155 (169)
Q Consensus 137 ~l~-----~~~~~~~~l~~L~~L~ 155 (169)
.++ .+|..+..+++|++|+
T Consensus 381 ~i~~~~~~~l~~~l~~~~~L~~L~ 404 (461)
T 1z7x_W 381 DVSDSSCSSLAATLLANHSLRELD 404 (461)
T ss_dssp CCCHHHHHHHHHHHHHCCCCCEEE
T ss_pred CCChhhHHHHHHHHHhCCCccEEE
Confidence 554 3444444455555555
No 132
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.36 E-value=4e-12 Score=85.14 Aligned_cols=103 Identities=20% Similarity=0.282 Sum_probs=81.5
Q ss_pred CccEEEecCCCCCCCCCCCCccccc-cCCCCccEEEeeCCcCcccc-cccccccceE-EEecccccCCcccc-ccccCCc
Q 038441 28 HLLVLRLLGTAIRGLPICLKLEKFS-KSMKSLTMLILDGTTIRELP-LSVELLTGLL-LNLKDWQYLESLPS-TINGLKS 103 (169)
Q Consensus 28 ~L~~L~l~~n~l~~~~~~~~l~~~~-~~~~~L~~L~l~~~~~~~lp-~~~~~~~~L~-l~l~~~~~~~~~~~-~~~~~~~ 103 (169)
..+++++++|.+ +.+| .-.+++++|++++|.++.++ ..+..+++|+ +++++|+ +..++. .+..+++
T Consensus 10 ~~~~l~~s~n~l---------~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~ 79 (170)
T 3g39_A 10 SGTTVDCSGKSL---------ASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQ 79 (170)
T ss_dssp ETTEEECTTSCC---------SSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTT
T ss_pred CCCEEEeCCCCc---------CccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCC
Confidence 357899999544 4455 33478999999999999884 4588999999 9999985 445554 5678999
Q ss_pred cCEEecCCCCCCCCcch-hhhcCCCCceEeccCCcceec
Q 038441 104 FKILNLSSCSKLENVPE-NLGKVESLEELDISRTAIRQL 141 (169)
Q Consensus 104 L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~ 141 (169)
|++|++++ |.+..++. .+.++++|++|++++|.+...
T Consensus 80 L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 80 LTQLSLND-NQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CCEEECCC-CccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 99999998 56667765 588999999999999988733
No 133
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.36 E-value=6.8e-15 Score=100.94 Aligned_cols=133 Identities=16% Similarity=0.213 Sum_probs=104.3
Q ss_pred hcCCCCccEEEecCCCCCCCCCCCCccccc---cCCCCccEEEeeCCcCcccccccccccceE-EEecccccCCcccccc
Q 038441 23 MGRMEHLLVLRLLGTAIRGLPICLKLEKFS---KSMKSLTMLILDGTTIRELPLSVELLTGLL-LNLKDWQYLESLPSTI 98 (169)
Q Consensus 23 ~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~---~~~~~L~~L~l~~~~~~~lp~~~~~~~~L~-l~l~~~~~~~~~~~~~ 98 (169)
+.....++.++++.+.+++. ...++.+| ..+++|++|++++|.++.+| .+..+++|+ +++++| .+..+|..+
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~--~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~ 89 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGM--IPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRN-LIKKIENLD 89 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBC--CTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEE-EECSCSSHH
T ss_pred HHhcccccCcchheeEeccc--cCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCC-Ccccccchh
Confidence 44455666666666655541 12455555 67889999999999999988 888999999 999998 455778777
Q ss_pred ccCCccCEEecCCCCCCCCcchhhhcCCCCceEeccCCcceecCh--hhhcCCCcceEEccccccccc
Q 038441 99 NGLKSFKILNLSSCSKLENVPENLGKVESLEELDISRTAIRQLPT--SIFLLKNLKAVDHYHLHHGIC 164 (169)
Q Consensus 99 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~l~~L~~L~~~~l~~~~~ 164 (169)
..+++|++|++++ +.+..+| .+..+++|++|++++|.++.++. .+..+++|++|+ +..+.+
T Consensus 90 ~~~~~L~~L~L~~-N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~---l~~N~l 152 (198)
T 1ds9_A 90 AVADTLEELWISY-NQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLL---LAGNPL 152 (198)
T ss_dssp HHHHHCSEEEEEE-EECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEE---ECSCHH
T ss_pred hcCCcCCEEECcC-CcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEE---ecCCcc
Confidence 7789999999998 5677776 68899999999999999998765 678899999999 444443
No 134
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.34 E-value=6.5e-12 Score=84.10 Aligned_cols=103 Identities=29% Similarity=0.358 Sum_probs=78.7
Q ss_pred CcEEeeCCccccccCchhhcCCCCccEEEecCCCCCCCCCCCCccccccCCCCccEEEeeCCcCcccccc-cccccceE-
Q 038441 5 PSTLNLFGLLKFRLFPEIMGRMEHLLVLRLLGTAIRGLPICLKLEKFSKSMKSLTMLILDGTTIRELPLS-VELLTGLL- 82 (169)
Q Consensus 5 l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~lp~~-~~~~~~L~- 82 (169)
.+.+++++ +.++.+|..+ .+++++|++++|.+++++. ..+ ..+++|++|++++|.++.+|+. +..+++|+
T Consensus 11 ~~~l~~s~-n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~----~~~-~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~ 82 (170)
T 3g39_A 11 GTTVDCSG-KSLASVPTGI--PTTTQVLYLYDNQITKLEP----GVF-DRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQ 82 (170)
T ss_dssp TTEEECTT-SCCSSCCSCC--CTTCSEEECCSSCCCCCCT----TTT-TTCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCEEEeCC-CCcCccCccC--CCCCcEEEcCCCcCCccCh----hhh-cCcccCCEEECCCCCcCccChhhccCCCCCCE
Confidence 36788887 4578888755 4889999999977766311 011 5678999999999999988776 67899999
Q ss_pred EEecccccCCccc-cccccCCccCEEecCCCCCCCC
Q 038441 83 LNLKDWQYLESLP-STINGLKSFKILNLSSCSKLEN 117 (169)
Q Consensus 83 l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~ 117 (169)
+++++|+ +..++ ..+..+++|++|++++ |.+..
T Consensus 83 L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~-N~~~c 116 (170)
T 3g39_A 83 LSLNDNQ-LKSIPRGAFDNLKSLTHIWLLN-NPWDC 116 (170)
T ss_dssp EECCSSC-CCCCCTTTTTTCTTCCEEECCS-SCBCT
T ss_pred EECCCCc-cCEeCHHHhcCCCCCCEEEeCC-CCCCC
Confidence 9999984 44555 4678899999999998 44433
No 135
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.34 E-value=5.7e-12 Score=92.72 Aligned_cols=148 Identities=13% Similarity=0.068 Sum_probs=104.3
Q ss_pred CCCCcEEeeCCccccccCch-hhcCCCCccEEEecCCCCCCCC-----CCCCccccc-c---------------------
Q 038441 2 LKFPSTLNLFGLLKFRLFPE-IMGRMEHLLVLRLLGTAIRGLP-----ICLKLEKFS-K--------------------- 53 (169)
Q Consensus 2 l~~l~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~-----~~~~l~~~~-~--------------------- 53 (169)
+.+|+.+++.+ .++.+++ +|..+++|+.+++..|.+..++ .|..+..+| .
T Consensus 100 ~~~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~ 177 (329)
T 3sb4_A 100 KQTLEKVILSE--KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP 177 (329)
T ss_dssp CTTCCC-CBCT--TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred cCCCcEEECCc--cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence 67889999987 5666665 4888999999999998754322 122222222 0
Q ss_pred ----------------------------------------------CCCCccEEEeeCCcCcccccc-cccccceE-EEe
Q 038441 54 ----------------------------------------------SMKSLTMLILDGTTIRELPLS-VELLTGLL-LNL 85 (169)
Q Consensus 54 ----------------------------------------------~~~~L~~L~l~~~~~~~lp~~-~~~~~~L~-l~l 85 (169)
.+++|+.+++++|+++.+|+. |..+++|+ +++
T Consensus 178 L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l 257 (329)
T 3sb4_A 178 LETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKL 257 (329)
T ss_dssp CEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEEC
T ss_pred cceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEEC
Confidence 156788888888888888765 77788888 888
Q ss_pred cccccCCccc-cccccCCccC-EEecCCCCCCCCcc-hhhhcCCCCceEeccCCcceecCh-hhhcCCCcceEE
Q 038441 86 KDWQYLESLP-STINGLKSFK-ILNLSSCSKLENVP-ENLGKVESLEELDISRTAIRQLPT-SIFLLKNLKAVD 155 (169)
Q Consensus 86 ~~~~~~~~~~-~~~~~~~~L~-~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~ 155 (169)
.+| +..++ ..|.++.+|+ .+.+.. .+..++ .+|.++.+|+.+++++|.++.++. .|.++++|+.++
T Consensus 258 ~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 258 PHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred Ccc--cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 775 44444 4667788888 888875 455554 568888888888888888887766 677788888776
No 136
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.25 E-value=2.2e-11 Score=95.80 Aligned_cols=34 Identities=18% Similarity=0.059 Sum_probs=18.0
Q ss_pred cCCCCccEEEeeCCcCcccccccccccceE-EEec
Q 038441 53 KSMKSLTMLILDGTTIRELPLSVELLTGLL-LNLK 86 (169)
Q Consensus 53 ~~~~~L~~L~l~~~~~~~lp~~~~~~~~L~-l~l~ 86 (169)
..+++|+.|++++|.+..+|..+..+++|+ ++++
T Consensus 217 ~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~ 251 (592)
T 3ogk_B 217 RNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGG 251 (592)
T ss_dssp HHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEEC
T ss_pred hhCCCCcEEeccCccHHHHHHHHhhhhHHHhhccc
Confidence 344556666666555555554445555555 5554
No 137
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.19 E-value=3.2e-12 Score=95.73 Aligned_cols=148 Identities=16% Similarity=0.117 Sum_probs=90.5
Q ss_pred CCCcEEeeCCccccccCchhhcC-----CCCccEEEecCCCCCCCCCCCCccccccCCCCccEEEeeCCcCcccc-ccc-
Q 038441 3 KFPSTLNLFGLLKFRLFPEIMGR-----MEHLLVLRLLGTAIRGLPICLKLEKFSKSMKSLTMLILDGTTIRELP-LSV- 75 (169)
Q Consensus 3 ~~l~~L~l~~~~~~~~~~~~~~~-----l~~L~~L~l~~n~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~lp-~~~- 75 (169)
+.++.|++++|.........+.. .++|++|++++|.+++ ..+..+...+++|+.|++++|.++... ..+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~----~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~ 147 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDP----AGLRTLLPVFLRARKLGLQLNSLGPEACKDLR 147 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCH----HHHHHTHHHHHTEEEEECCSSCCCHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCH----HHHHHHHHHHHhccHhhcCCCCCCHHHHHHHH
Confidence 56888888887632222222222 2688889999876654 222223244567888888888876322 222
Q ss_pred ----ccccceE-EEecccccCC----ccccccccCCccCEEecCCCCCCCC-----cchhhhcCCCCceEeccCCccee-
Q 038441 76 ----ELLTGLL-LNLKDWQYLE----SLPSTINGLKSFKILNLSSCSKLEN-----VPENLGKVESLEELDISRTAIRQ- 140 (169)
Q Consensus 76 ----~~~~~L~-l~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~-----~~~~~~~l~~L~~L~l~~n~l~~- 140 (169)
...++|+ +++++|.... .++..+..+++|++|++++| .++. +...+...++|+.|++++|.+++
T Consensus 148 ~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~ 226 (372)
T 3un9_A 148 DLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYNGAGDT 226 (372)
T ss_dssp HHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHH
T ss_pred HHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHH
Confidence 2346688 8888874322 13334456778888888874 3432 23455667788888888888763
Q ss_pred ----cChhhhcCCCcceEE
Q 038441 141 ----LPTSIFLLKNLKAVD 155 (169)
Q Consensus 141 ----~~~~~~~l~~L~~L~ 155 (169)
+...+...+.|++|+
T Consensus 227 g~~~l~~~L~~~~~L~~L~ 245 (372)
T 3un9_A 227 AALALARAAREHPSLELLH 245 (372)
T ss_dssp HHHHHHHHHHHCSSCCEEE
T ss_pred HHHHHHHHHHhCCCCCEEe
Confidence 333445567788888
No 138
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.15 E-value=2.2e-11 Score=95.71 Aligned_cols=65 Identities=20% Similarity=0.170 Sum_probs=33.8
Q ss_pred CCCCcEEeeCCcccccc--CchhhcCCCCccEEEecCCCCCCCCCCCCccccccCCCCccEEEeeCCc
Q 038441 2 LKFPSTLNLFGLLKFRL--FPEIMGRMEHLLVLRLLGTAIRGLPICLKLEKFSKSMKSLTMLILDGTT 67 (169)
Q Consensus 2 l~~l~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 67 (169)
+++|++|++++|..++. ++..+..+++|++|++++|.+++.. ...+..++..+++|+.|++++|.
T Consensus 129 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~-~~~l~~~~~~~~~L~~L~l~~~~ 195 (594)
T 2p1m_B 129 FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVS-GHWLSHFPDTYTSLVSLNISCLA 195 (594)
T ss_dssp CTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCC-GGGGGGSCTTCCCCCEEECTTCC
T ss_pred CCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcc-hHHHHHHhhcCCcCcEEEecccC
Confidence 45666777766654444 3333445677777777776554411 01122222345556666666554
No 139
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.13 E-value=1.4e-10 Score=85.76 Aligned_cols=100 Identities=23% Similarity=0.207 Sum_probs=74.4
Q ss_pred EEEecCCCCCCCCCCCCccccc--cCCCCccEEEeeC-CcCccccc-ccccccceE-EEecccccCCccccccccCCccC
Q 038441 31 VLRLLGTAIRGLPICLKLEKFS--KSMKSLTMLILDG-TTIRELPL-SVELLTGLL-LNLKDWQYLESLPSTINGLKSFK 105 (169)
Q Consensus 31 ~L~l~~n~l~~~~~~~~l~~~~--~~~~~L~~L~l~~-~~~~~lp~-~~~~~~~L~-l~l~~~~~~~~~~~~~~~~~~L~ 105 (169)
.++.+++ +.++.+| ..+++|+.|++++ |.++.+++ .++.+++|+ |++++|+.....+..+.++++|+
T Consensus 12 ~v~~~~~--------n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~ 83 (347)
T 2ifg_A 12 GLRCTRD--------GALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLS 83 (347)
T ss_dssp CEECCSS--------CCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCC
T ss_pred EEEcCCC--------CCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCC
Confidence 4577774 1344444 4566799999996 89998875 488899999 99999855554556778899999
Q ss_pred EEecCCCCCCCCcchhhhcCCCCceEeccCCcce
Q 038441 106 ILNLSSCSKLENVPENLGKVESLEELDISRTAIR 139 (169)
Q Consensus 106 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 139 (169)
+|++++ |.+..+|..+.....|+.|++.+|.+.
T Consensus 84 ~L~l~~-N~l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 84 RLNLSF-NALESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp EEECCS-SCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred EEeCCC-CccceeCHHHcccCCceEEEeeCCCcc
Confidence 999998 667777765443334999999999887
No 140
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.09 E-value=4.5e-10 Score=82.54 Aligned_cols=74 Identities=16% Similarity=0.281 Sum_probs=47.7
Q ss_pred ccceE-EEecccccCCcccc-ccccCCccCEEecCCCCCCCCcch-hhhcCCCCc-eEeccCCcceecCh-hhhcCCCcc
Q 038441 78 LTGLL-LNLKDWQYLESLPS-TINGLKSFKILNLSSCSKLENVPE-NLGKVESLE-ELDISRTAIRQLPT-SIFLLKNLK 152 (169)
Q Consensus 78 ~~~L~-l~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~-~L~l~~n~l~~~~~-~~~~l~~L~ 152 (169)
+++|+ +++++| .+..++. .|.++.+|+.+++..+ +..++. +|.++.+|+ .+++.. .++.++. .|..+++|+
T Consensus 225 ~~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~ 300 (329)
T 3sb4_A 225 MPNLVSLDISKT-NATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLR 300 (329)
T ss_dssp CTTCCEEECTTB-CCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEE
T ss_pred cCCCeEEECCCC-CcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCC
Confidence 45666 666665 3444443 5666777777777762 555543 567777777 777776 6666654 667777777
Q ss_pred eEE
Q 038441 153 AVD 155 (169)
Q Consensus 153 ~L~ 155 (169)
.++
T Consensus 301 ~l~ 303 (329)
T 3sb4_A 301 YVL 303 (329)
T ss_dssp EEE
T ss_pred EEE
Confidence 777
No 141
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.09 E-value=7.1e-11 Score=92.85 Aligned_cols=146 Identities=16% Similarity=0.156 Sum_probs=86.1
Q ss_pred CcEEeeCCcccccc--CchhhcCCCCccEEEecCCCCCCCCCCCC---ccccccCCCCccEEEeeCCcCc-----ccccc
Q 038441 5 PSTLNLFGLLKFRL--FPEIMGRMEHLLVLRLLGTAIRGLPICLK---LEKFSKSMKSLTMLILDGTTIR-----ELPLS 74 (169)
Q Consensus 5 l~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---l~~~~~~~~~L~~L~l~~~~~~-----~lp~~ 74 (169)
|++|++++|..+.. ++.....+++|++|++++|.+++ .. +..++..+++|+.|++++|.++ .++..
T Consensus 140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~----~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~ 215 (592)
T 3ogk_B 140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSE----KDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETI 215 (592)
T ss_dssp CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEEC----CCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHH
T ss_pred CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccC----cchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHH
Confidence 66666666653221 12223457777777777765544 22 2233356778888888888765 23344
Q ss_pred cccccceE-EEecccccCCccccccccCCccCEEecCCCC--------------------------CCCCcchhhhcCCC
Q 038441 75 VELLTGLL-LNLKDWQYLESLPSTINGLKSFKILNLSSCS--------------------------KLENVPENLGKVES 127 (169)
Q Consensus 75 ~~~~~~L~-l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~--------------------------~~~~~~~~~~~l~~ 127 (169)
+..+++|+ +++++|. ...++..+..+++|++|.++... ....+|..+..+++
T Consensus 216 ~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~ 294 (592)
T 3ogk_B 216 ARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQ 294 (592)
T ss_dssp HHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGG
T ss_pred HhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCC
Confidence 56678888 8888763 33355555566666666664211 12334445566677
Q ss_pred CceEeccCCcce--ecChhhhcCCCcceEE
Q 038441 128 LEELDISRTAIR--QLPTSIFLLKNLKAVD 155 (169)
Q Consensus 128 L~~L~l~~n~l~--~~~~~~~~l~~L~~L~ 155 (169)
|++|++++|.++ .+...+..+++|+.|+
T Consensus 295 L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~ 324 (592)
T 3ogk_B 295 IRKLDLLYALLETEDHCTLIQKCPNLEVLE 324 (592)
T ss_dssp CCEEEETTCCCCHHHHHHHHTTCTTCCEEE
T ss_pred CcEEecCCCcCCHHHHHHHHHhCcCCCEEe
Confidence 777777777765 2223346677777777
No 142
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.04 E-value=7.6e-10 Score=81.76 Aligned_cols=102 Identities=21% Similarity=0.145 Sum_probs=77.1
Q ss_pred EEeeCCccccccCchhhcCCCCccEEEecC-CCCCCCCCCCCccccccCCCCccEEEeeCCcCccccc-ccccccceE-E
Q 038441 7 TLNLFGLLKFRLFPEIMGRMEHLLVLRLLG-TAIRGLPICLKLEKFSKSMKSLTMLILDGTTIRELPL-SVELLTGLL-L 83 (169)
Q Consensus 7 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~lp~-~~~~~~~L~-l 83 (169)
.++.++.+.++.+|. +..+++|++|++++ |.+++++. ..+ ..+++|++|++++|.++.+++ .+..+++|+ |
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~----~~~-~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L 85 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLEL----RDL-RGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL 85 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECG----GGS-CSCCCCSEEECCSSCCCEECTTGGGSCSCCCEE
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcCh----hHh-ccccCCCEEECCCCccceeCHHHhcCCcCCCEE
Confidence 456666446888999 98999999999996 76665210 111 678999999999999998766 578999999 9
Q ss_pred EecccccCCccccccccCCccCEEecCCCCCCC
Q 038441 84 NLKDWQYLESLPSTINGLKSFKILNLSSCSKLE 116 (169)
Q Consensus 84 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 116 (169)
++++| .+..+|..+.....|++|++.+ |.+.
T Consensus 86 ~l~~N-~l~~~~~~~~~~~~L~~l~l~~-N~~~ 116 (347)
T 2ifg_A 86 NLSFN-ALESLSWKTVQGLSLQELVLSG-NPLH 116 (347)
T ss_dssp ECCSS-CCSCCCSTTTCSCCCCEEECCS-SCCC
T ss_pred eCCCC-ccceeCHHHcccCCceEEEeeC-CCcc
Confidence 99998 4556665544444499999998 4444
No 143
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.01 E-value=1e-10 Score=91.99 Aligned_cols=131 Identities=19% Similarity=0.230 Sum_probs=65.6
Q ss_pred CCCCcEEeeCCccccccCc---------------hhhcCCCCccEEEecCCCCCCCCCCCCccccccCCCCccEEEeeCC
Q 038441 2 LKFPSTLNLFGLLKFRLFP---------------EIMGRMEHLLVLRLLGTAIRGLPICLKLEKFSKSMKSLTMLILDGT 66 (169)
Q Consensus 2 l~~l~~L~l~~~~~~~~~~---------------~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~~~~~~L~~L~l~~~ 66 (169)
++.+++|++.+|..+.++. .....+++|++|++++|.+++ ..+..+...+++|+.|++++|
T Consensus 65 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~----~~~~~l~~~~~~L~~L~L~~~ 140 (594)
T 2p1m_B 65 FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTD----DCLELIAKSFKNFKVLVLSSC 140 (594)
T ss_dssp CTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCH----HHHHHHHHHCTTCCEEEEESC
T ss_pred CCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcH----HHHHHHHHhCCCCcEEeCCCc
Confidence 3567777877776554331 123456777777777755443 122222234566666666666
Q ss_pred -cCcc--cccccccccceE-EEecccccCCccc----cccccCCccCEEecCCCC-CC--CCcchhhhcCCCCceEeccC
Q 038441 67 -TIRE--LPLSVELLTGLL-LNLKDWQYLESLP----STINGLKSFKILNLSSCS-KL--ENVPENLGKVESLEELDISR 135 (169)
Q Consensus 67 -~~~~--lp~~~~~~~~L~-l~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~-~~--~~~~~~~~~l~~L~~L~l~~ 135 (169)
.++. ++.....+++|+ +++++|......+ .....+++|++|++++|. .+ ..+...+.++++|++|++++
T Consensus 141 ~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~ 220 (594)
T 2p1m_B 141 EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNR 220 (594)
T ss_dssp EEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCT
T ss_pred CCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCC
Confidence 4442 333344566666 6666654222111 122244566666666543 11 01111223445566666655
Q ss_pred C
Q 038441 136 T 136 (169)
Q Consensus 136 n 136 (169)
|
T Consensus 221 ~ 221 (594)
T 2p1m_B 221 A 221 (594)
T ss_dssp T
T ss_pred C
Confidence 5
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.97 E-value=1.1e-10 Score=87.34 Aligned_cols=133 Identities=14% Similarity=0.045 Sum_probs=94.6
Q ss_pred CCCcEEeeCCccccccCchh-hcCCCCccEEEecCCCCCCCCCCCCccccc----cCCCCccEEEeeCCcCcc-----cc
Q 038441 3 KFPSTLNLFGLLKFRLFPEI-MGRMEHLLVLRLLGTAIRGLPICLKLEKFS----KSMKSLTMLILDGTTIRE-----LP 72 (169)
Q Consensus 3 ~~l~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~----~~~~~L~~L~l~~~~~~~-----lp 72 (169)
+.|++|++++|..-...... ...+++|++|++++|.+++ .....+. ...++|+.|++++|.++. ++
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~----~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~ 176 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGP----EACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLM 176 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCH----HHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCH----HHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHH
Confidence 57999999997632222222 2346789999999977765 2223332 345789999999999874 34
Q ss_pred cccccccceE-EEecccccCCc----cccccccCCccCEEecCCCCCCCC-----cchhhhcCCCCceEeccCCccee
Q 038441 73 LSVELLTGLL-LNLKDWQYLES----LPSTINGLKSFKILNLSSCSKLEN-----VPENLGKVESLEELDISRTAIRQ 140 (169)
Q Consensus 73 ~~~~~~~~L~-l~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~-----~~~~~~~l~~L~~L~l~~n~l~~ 140 (169)
..+...++|+ +++++|..... +...+...++|++|++++| .++. +...+...+.|++|++++|.++.
T Consensus 177 ~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 177 EGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN-GAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 4456788999 99999854321 2445667789999999985 4443 34456677899999999999884
No 145
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.82 E-value=1.6e-08 Score=75.43 Aligned_cols=145 Identities=19% Similarity=0.153 Sum_probs=90.3
Q ss_pred CCCCcEEeeCCccc---------cccCchhhcCCCCccEEEecCCCCCCCCCCCCccccc-cCCCCccEEEeeCCcCcc-
Q 038441 2 LKFPSTLNLFGLLK---------FRLFPEIMGRMEHLLVLRLLGTAIRGLPICLKLEKFS-KSMKSLTMLILDGTTIRE- 70 (169)
Q Consensus 2 l~~l~~L~l~~~~~---------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~-~~~~~L~~L~l~~~~~~~- 70 (169)
+++|+.|.+.+... ...++..+..+++|+.|.++++. .+ .++ -.+++|+.|.+..+.++.
T Consensus 138 l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~--------~l-~l~~~~~~~L~~L~L~~~~l~~~ 208 (362)
T 2ra8_A 138 FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTN--------NL-SIGKKPRPNLKSLEIISGGLPDS 208 (362)
T ss_dssp HTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCB--------TC-BCCSCBCTTCSEEEEECSBCCHH
T ss_pred cchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCC--------Cc-eeccccCCCCcEEEEecCCCChH
Confidence 35788888865321 12355667788999999998841 11 122 236789999998887762
Q ss_pred cccccc--cccceE-EEeccc--ccCC-----cccccc--ccCCccCEEecCCCCCCCCcchhhh---cCCCCceEeccC
Q 038441 71 LPLSVE--LLTGLL-LNLKDW--QYLE-----SLPSTI--NGLKSFKILNLSSCSKLENVPENLG---KVESLEELDISR 135 (169)
Q Consensus 71 lp~~~~--~~~~L~-l~l~~~--~~~~-----~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~---~l~~L~~L~l~~ 135 (169)
....+. .+++|+ |+++.+ .... .+...+ ..+++|++|.+.+|.........+. .+++|++|+++.
T Consensus 209 ~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~ 288 (362)
T 2ra8_A 209 VVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA 288 (362)
T ss_dssp HHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS
T ss_pred HHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCC
Confidence 222333 578888 887531 1111 111222 2468899999987544333333333 467899999999
Q ss_pred Cccee-----cChhhhcCCCcceEE
Q 038441 136 TAIRQ-----LPTSIFLLKNLKAVD 155 (169)
Q Consensus 136 n~l~~-----~~~~~~~l~~L~~L~ 155 (169)
|.+.+ ++..+..+++|+.|+
T Consensus 289 n~L~d~G~~~L~~~L~~l~~L~~L~ 313 (362)
T 2ra8_A 289 GVLTDEGARLLLDHVDKIKHLKFIN 313 (362)
T ss_dssp SCCBHHHHHHHHTTHHHHTTCSEEE
T ss_pred CCCChHHHHHHHhhcccCCcceEEE
Confidence 98874 344446678899998
No 146
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.72 E-value=1.6e-07 Score=70.93 Aligned_cols=76 Identities=13% Similarity=0.185 Sum_probs=41.3
Q ss_pred cccccceE-EEecccccCC-----cc-ccccccCCccCEEecCCCCCCCCcc-hhhhcCCCCceEeccCCcceecCh-hh
Q 038441 75 VELLTGLL-LNLKDWQYLE-----SL-PSTINGLKSFKILNLSSCSKLENVP-ENLGKVESLEELDISRTAIRQLPT-SI 145 (169)
Q Consensus 75 ~~~~~~L~-l~l~~~~~~~-----~~-~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~-~~ 145 (169)
|..+++|+ +.+.++ ... .+ ...+.+|++|+.+.+.. .+..++ .+|.++.+|+.+.+..+ ++.++. .|
T Consensus 267 F~~c~~L~~l~l~~~-~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF 342 (401)
T 4fdw_A 267 FYYCPELAEVTTYGS-TFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAF 342 (401)
T ss_dssp TTTCTTCCEEEEESS-CCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSS
T ss_pred hhCCCCCCEEEeCCc-cccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhC
Confidence 55556666 666554 221 12 23455566666666653 244443 34666677777776443 555544 55
Q ss_pred hcCCCcceEE
Q 038441 146 FLLKNLKAVD 155 (169)
Q Consensus 146 ~~l~~L~~L~ 155 (169)
..+ +|+.++
T Consensus 343 ~~~-~L~~l~ 351 (401)
T 4fdw_A 343 NNT-GIKEVK 351 (401)
T ss_dssp SSS-CCCEEE
T ss_pred CCC-CCCEEE
Confidence 566 677666
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.60 E-value=4.9e-08 Score=72.78 Aligned_cols=131 Identities=13% Similarity=0.214 Sum_probs=86.8
Q ss_pred CCCCCcEEeeCCccccccCchhhcCCCCccEEEecCCCCCCCCCCCCccccc-cCCCCccEEEeeCC--c------Cccc
Q 038441 1 ALKFPSTLNLFGLLKFRLFPEIMGRMEHLLVLRLLGTAIRGLPICLKLEKFS-KSMKSLTMLILDGT--T------IREL 71 (169)
Q Consensus 1 ~l~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~-~~~~~L~~L~l~~~--~------~~~l 71 (169)
+++.|+.|++++|..+. +++ + .+++|+.|++..+.++. ..+..+. ..+++|+.|+++.+ . +..+
T Consensus 170 ~~P~L~~L~L~g~~~l~-l~~-~-~~~~L~~L~L~~~~l~~----~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l 242 (362)
T 2ra8_A 170 AMPLLNNLKIKGTNNLS-IGK-K-PRPNLKSLEIISGGLPD----SVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF 242 (362)
T ss_dssp TCTTCCEEEEECCBTCB-CCS-C-BCTTCSEEEEECSBCCH----HHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred cCCCCcEEEEeCCCCce-ecc-c-cCCCCcEEEEecCCCCh----HHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence 36789999999874333 343 3 38899999999855543 2233333 46899999998632 1 2222
Q ss_pred cccc--ccccceE-EEecccccCCcccccc---ccCCccCEEecCCCCCCCC-----cchhhhcCCCCceEeccCCcce
Q 038441 72 PLSV--ELLTGLL-LNLKDWQYLESLPSTI---NGLKSFKILNLSSCSKLEN-----VPENLGKVESLEELDISRTAIR 139 (169)
Q Consensus 72 p~~~--~~~~~L~-l~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~-----~~~~~~~l~~L~~L~l~~n~l~ 139 (169)
.+.+ ..+++|+ |++.+|.........+ ..+++|++|+++. +.++. ++..+.++++|+.|++++|.++
T Consensus 243 ~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 2222 3478999 9998875443222222 2578999999987 45543 3334467789999999999887
No 148
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.59 E-value=5.6e-07 Score=67.95 Aligned_cols=144 Identities=13% Similarity=0.143 Sum_probs=81.5
Q ss_pred CcEEeeCCccccccCc-hhhcCCCCccEEEecCCCCCCCCC----C---------CCccccc----cCCCCccEEEeeCC
Q 038441 5 PSTLNLFGLLKFRLFP-EIMGRMEHLLVLRLLGTAIRGLPI----C---------LKLEKFS----KSMKSLTMLILDGT 66 (169)
Q Consensus 5 l~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~----~---------~~l~~~~----~~~~~L~~L~l~~~ 66 (169)
|+.+.+.. .++.++ ..|..+++|+.+++..|.++.++. | ..++.++ .+.++|+.+.+..+
T Consensus 159 L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~l~~I~~~aF~~~~~L~~l~l~~~ 236 (401)
T 4fdw_A 159 VQEIVFPS--TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVTLKEIGSQAFLKTSQLKTIEIPEN 236 (401)
T ss_dssp CCEEECCT--TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCCEECCTT
T ss_pred ceEEEeCC--CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCchheehhhHhhCCCCCCEEecCCC
Confidence 45555543 344444 346677788888887755543221 1 1122222 34455666666543
Q ss_pred cCcccccccccccceE-EEecccccCCcc-ccccccCCccCEEecCCCCCCC-----Cc-chhhhcCCCCceEeccCCcc
Q 038441 67 TIRELPLSVELLTGLL-LNLKDWQYLESL-PSTINGLKSFKILNLSSCSKLE-----NV-PENLGKVESLEELDISRTAI 138 (169)
Q Consensus 67 ~~~~lp~~~~~~~~L~-l~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~-----~~-~~~~~~l~~L~~L~l~~n~l 138 (169)
++.++...+.-.+|+ +.+..+ +..+ ...+.+|++|+.+.+.++ ... .+ +..|.++.+|+.+.+. +.+
T Consensus 237 -l~~I~~~aF~~~~L~~i~lp~~--i~~I~~~aF~~c~~L~~l~l~~~-~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i 311 (401)
T 4fdw_A 237 -VSTIGQEAFRESGITTVKLPNG--VTNIASRAFYYCPELAEVTTYGS-TFNDDPEAMIHPYCLEGCPKLARFEIP-ESI 311 (401)
T ss_dssp -CCEECTTTTTTCCCSEEEEETT--CCEECTTTTTTCTTCCEEEEESS-CCCCCTTCEECTTTTTTCTTCCEECCC-TTC
T ss_pred -ccCccccccccCCccEEEeCCC--ccEEChhHhhCCCCCCEEEeCCc-cccCCcccEECHHHhhCCccCCeEEeC-Cce
Confidence 445544422225566 666432 3333 346667778888877652 222 23 3457778888888887 447
Q ss_pred eecCh-hhhcCCCcceEE
Q 038441 139 RQLPT-SIFLLKNLKAVD 155 (169)
Q Consensus 139 ~~~~~-~~~~l~~L~~L~ 155 (169)
+.++. .|..+.+|+.+.
T Consensus 312 ~~I~~~aF~~c~~L~~l~ 329 (401)
T 4fdw_A 312 RILGQGLLGGNRKVTQLT 329 (401)
T ss_dssp CEECTTTTTTCCSCCEEE
T ss_pred EEEhhhhhcCCCCccEEE
Confidence 66655 667778888877
No 149
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.55 E-value=3.2e-08 Score=66.90 Aligned_cols=113 Identities=20% Similarity=0.151 Sum_probs=72.9
Q ss_pred hhcCCCCccEEEecCC-CCCCCCCCCCccccc---cCCCCccEEEeeCCcCcc-----cccccccccceE-EEecccccC
Q 038441 22 IMGRMEHLLVLRLLGT-AIRGLPICLKLEKFS---KSMKSLTMLILDGTTIRE-----LPLSVELLTGLL-LNLKDWQYL 91 (169)
Q Consensus 22 ~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~~~---~~~~~L~~L~l~~~~~~~-----lp~~~~~~~~L~-l~l~~~~~~ 91 (169)
.+...+.|++|++++| .+++ .....+. ...++|++|++++|.++. +...+...++|+ +++++|...
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~----~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPV----PTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCH----HHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HHhcCCCCCEEEecCCCCCCH----HHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 4566788888999886 6654 2333333 445778888888888762 233345556788 888887433
Q ss_pred Cc----cccccccCCccCEEec--CCCCCCCC-----cchhhhcCCCCceEeccCCcce
Q 038441 92 ES----LPSTINGLKSFKILNL--SSCSKLEN-----VPENLGKVESLEELDISRTAIR 139 (169)
Q Consensus 92 ~~----~~~~~~~~~~L~~L~l--~~~~~~~~-----~~~~~~~l~~L~~L~l~~n~l~ 139 (169)
.. +...+...++|++|++ ++ +.++. +...+...+.|++|++++|.+.
T Consensus 107 ~~g~~~l~~~L~~n~~L~~L~L~~~~-N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 107 GSGILALVEALQSNTSLIELRIDNQS-QPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHHGGGGCSSCCEEECCCCS-SCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHHHhCCCceEEEecCCC-CCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 32 3345566677888888 55 44433 2334556678888888888775
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.45 E-value=1.1e-07 Score=64.31 Aligned_cols=107 Identities=12% Similarity=0.109 Sum_probs=77.2
Q ss_pred CCCCcEEeeCCcccccc-----CchhhcCCCCccEEEecCCCCCCCCCCCCccccc---cCCCCccEEEeeCCcCcc---
Q 038441 2 LKFPSTLNLFGLLKFRL-----FPEIMGRMEHLLVLRLLGTAIRGLPICLKLEKFS---KSMKSLTMLILDGTTIRE--- 70 (169)
Q Consensus 2 l~~l~~L~l~~~~~~~~-----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~---~~~~~L~~L~l~~~~~~~--- 70 (169)
.+.|++|++++|..++. +...+...++|++|++++|.+++ .....+. ...+.|++|++++|.++.
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~----~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSND----PVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCH----HHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCCh----HHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 46799999999834433 44556778999999999987765 3333333 445789999999999883
Q ss_pred --cccccccccceE-EEe--cccccCCc----cccccccCCccCEEecCCC
Q 038441 71 --LPLSVELLTGLL-LNL--KDWQYLES----LPSTINGLKSFKILNLSSC 112 (169)
Q Consensus 71 --lp~~~~~~~~L~-l~l--~~~~~~~~----~~~~~~~~~~L~~L~l~~~ 112 (169)
+...+...++|+ +++ ++|..... +...+...++|++|++++|
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 445577778899 999 77744332 3345566789999999984
No 151
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.28 E-value=9.4e-07 Score=59.10 Aligned_cols=80 Identities=19% Similarity=0.165 Sum_probs=35.3
Q ss_pred CccEEEeeCCcCcc-cccccccccceE-EEecccccCCcc-ccccccC----CccCEEecCCCCCCCCc-chhhhcCCCC
Q 038441 57 SLTMLILDGTTIRE-LPLSVELLTGLL-LNLKDWQYLESL-PSTINGL----KSFKILNLSSCSKLENV-PENLGKVESL 128 (169)
Q Consensus 57 ~L~~L~l~~~~~~~-lp~~~~~~~~L~-l~l~~~~~~~~~-~~~~~~~----~~L~~L~l~~~~~~~~~-~~~~~~l~~L 128 (169)
+|+.|+++++.++. --..+..+++|+ +++++|..+... -..+..+ ++|++|++++|..+++. -..+.++++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 34555555554441 112234455555 555554322211 0122221 24566666655544332 1234455666
Q ss_pred ceEeccCC
Q 038441 129 EELDISRT 136 (169)
Q Consensus 129 ~~L~l~~n 136 (169)
++|++++|
T Consensus 142 ~~L~L~~c 149 (176)
T 3e4g_A 142 KYLFLSDL 149 (176)
T ss_dssp CEEEEESC
T ss_pred CEEECCCC
Confidence 66666655
No 152
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.16 E-value=2e-06 Score=57.47 Aligned_cols=96 Identities=9% Similarity=0.119 Sum_probs=66.9
Q ss_pred cCchhhcCCCCccEEEecCCCCCCCCCCCCccccccCCCCccEEEeeCC-cCcc-ccccccc----ccceE-EEeccccc
Q 038441 18 LFPEIMGRMEHLLVLRLLGTAIRGLPICLKLEKFSKSMKSLTMLILDGT-TIRE-LPLSVEL----LTGLL-LNLKDWQY 90 (169)
Q Consensus 18 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~-lp~~~~~----~~~L~-l~l~~~~~ 90 (169)
.+|.....-..|+.|+++++.+++ ..+..+ .++++|+.|++++| .++. --..+.. .++|+ +++++|..
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~Itd----~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ 126 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSCIMS----IGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGN 126 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCCCCG----GGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTT
T ss_pred cCCcccCCCceEeEEeCcCCCccH----HHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCc
Confidence 344332233478999999977665 455555 67899999999999 5773 2233444 24799 99999865
Q ss_pred CCcc-ccccccCCccCEEecCCCCCCCCc
Q 038441 91 LESL-PSTINGLKSFKILNLSSCSKLENV 118 (169)
Q Consensus 91 ~~~~-~~~~~~~~~L~~L~l~~~~~~~~~ 118 (169)
+... -..+..+++|++|++++|..++..
T Consensus 127 ITD~Gl~~L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 127 VTDKGIIALHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp CCHHHHHHGGGCTTCCEEEEESCTTCCCH
T ss_pred CCHHHHHHHhcCCCCCEEECCCCCCCCch
Confidence 5432 235667899999999999887764
No 153
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.03 E-value=3.7e-06 Score=60.03 Aligned_cols=78 Identities=21% Similarity=0.190 Sum_probs=49.7
Q ss_pred cCCCCccEEEeeCCcCcccc---cccccccceE-EEecccccCCccccccccCC--ccCEEecCCCCCCCCcc-------
Q 038441 53 KSMKSLTMLILDGTTIRELP---LSVELLTGLL-LNLKDWQYLESLPSTINGLK--SFKILNLSSCSKLENVP------- 119 (169)
Q Consensus 53 ~~~~~L~~L~l~~~~~~~lp---~~~~~~~~L~-l~l~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~------- 119 (169)
..+++|+.|++++|.++.++ ..+..+++|+ |++++|.... + ..+..+. +|++|++.+|.....+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~-~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS-E-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS-G-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC-c-hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 45677888888888777543 3456777888 8888774433 2 2233333 78888888854433333
Q ss_pred hhhhcCCCCceEe
Q 038441 120 ENLGKVESLEELD 132 (169)
Q Consensus 120 ~~~~~l~~L~~L~ 132 (169)
..+..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 2356778888877
No 154
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.96 E-value=1.3e-05 Score=57.25 Aligned_cols=82 Identities=28% Similarity=0.364 Sum_probs=60.0
Q ss_pred ccccceE-EEecccccCC--ccccccccCCccCEEecCCCCCCCCcchhhhcCC--CCceEeccCCcce-ecCh------
Q 038441 76 ELLTGLL-LNLKDWQYLE--SLPSTINGLKSFKILNLSSCSKLENVPENLGKVE--SLEELDISRTAIR-QLPT------ 143 (169)
Q Consensus 76 ~~~~~L~-l~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~--~L~~L~l~~n~l~-~~~~------ 143 (169)
..+++|+ |++++|+... .++..+..+++|+.|++++ |.+..+ ..+..+. .|++|++++|.+. .+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~-N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG-NELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTT-SCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCC-CccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 4578899 9999986554 3445667899999999998 566555 2344444 8999999999987 3442
Q ss_pred -hhhcCCCcceEEcccc
Q 038441 144 -SIFLLKNLKAVDHYHL 159 (169)
Q Consensus 144 -~~~~l~~L~~L~~~~l 159 (169)
.+..+++|+.||-..+
T Consensus 245 ~il~~~P~L~~LDg~~v 261 (267)
T 3rw6_A 245 AIRERFPKLLRLDGHEL 261 (267)
T ss_dssp HHHHHCTTCCEESSCBC
T ss_pred HHHHHCcccCeECCcCC
Confidence 3578899999984433
No 155
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.66 E-value=0.00032 Score=52.55 Aligned_cols=135 Identities=14% Similarity=0.178 Sum_probs=70.4
Q ss_pred CCcEEeeCCccccccCc-hhhcCCCCccEEEecCCCCCCCCCCCCccccc-cCCCCccEEEeeCCcCccccc-ccccccc
Q 038441 4 FPSTLNLFGLLKFRLFP-EIMGRMEHLLVLRLLGTAIRGLPICLKLEKFS-KSMKSLTMLILDGTTIRELPL-SVELLTG 80 (169)
Q Consensus 4 ~l~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~-~~~~~L~~L~l~~~~~~~lp~-~~~~~~~ 80 (169)
.++.+.+.. .++.++ ..+..+..++.+.+..+... +.... .....++.+...... ++. .+..+.+
T Consensus 231 ~l~~i~ip~--~~~~i~~~~f~~~~~l~~~~~~~~~~~-------i~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~ 298 (394)
T 4fs7_A 231 GVKNIIIPD--SFTELGKSVFYGCTDLESISIQNNKLR-------IGGSLFYNCSGLKKVIYGSVI---VPEKTFYGCSS 298 (394)
T ss_dssp CCCEEEECT--TCCEECSSTTTTCSSCCEEEECCTTCE-------ECSCTTTTCTTCCEEEECSSE---ECTTTTTTCTT
T ss_pred CCceEEECC--CceecccccccccccceeEEcCCCcce-------eeccccccccccceeccCcee---ecccccccccc
Confidence 455555543 233333 34667888888888763221 11111 333444444443322 222 2445566
Q ss_pred eE-EEecccccCCccc-cccccCCccCEEecCCCCCCCCcc-hhhhcCCCCceEeccCCcceecCh-hhhcCCCcceEE
Q 038441 81 LL-LNLKDWQYLESLP-STINGLKSFKILNLSSCSKLENVP-ENLGKVESLEELDISRTAIRQLPT-SIFLLKNLKAVD 155 (169)
Q Consensus 81 L~-l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~ 155 (169)
|+ +.+..+ +..++ ..+.++.+|+.+.+.. .+..+. .+|.++.+|+.+.+..+ ++.++. .|.++.+|+.++
T Consensus 299 L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ 372 (394)
T 4fs7_A 299 LTEVKLLDS--VKFIGEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVE 372 (394)
T ss_dssp CCEEEECTT--CCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEE
T ss_pred ccccccccc--cceechhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEE
Confidence 66 666542 33332 3455666777776653 244443 35666777777776554 555544 556666666666
No 156
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.59 E-value=0.0012 Score=48.93 Aligned_cols=95 Identities=14% Similarity=0.233 Sum_probs=40.9
Q ss_pred CCccEEEeeCCcCcccccc-cccccceE-EEecccccCCccc-cccccCCccCEEecCCCCCCCCcc-hhhhcCCCCceE
Q 038441 56 KSLTMLILDGTTIRELPLS-VELLTGLL-LNLKDWQYLESLP-STINGLKSFKILNLSSCSKLENVP-ENLGKVESLEEL 131 (169)
Q Consensus 56 ~~L~~L~l~~~~~~~lp~~-~~~~~~L~-l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L 131 (169)
..|+.+.+..+ ++.+... +..+.+++ +.+..+ +..++ ..+.++.+|+.+.+.+ +.+..++ .+|.++.+|+.+
T Consensus 240 ~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~-~~i~~I~~~aF~~c~~L~~i 315 (379)
T 4h09_A 240 KALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDN-SAIETLEPRVFMDCVKLSSV 315 (379)
T ss_dssp SSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTTCCEEEECC-TTCCEECTTTTTTCTTCCEE
T ss_pred ccceEEEcCCC-ccEeCccccceeehhcccccccc--ceeccccccccccccccccccc-cccceehhhhhcCCCCCCEE
Confidence 34444444433 3333222 33444455 544431 22222 2344455555555543 2333332 245555555555
Q ss_pred eccCCcceecCh-hhhcCCCcceEE
Q 038441 132 DISRTAIRQLPT-SIFLLKNLKAVD 155 (169)
Q Consensus 132 ~l~~n~l~~~~~-~~~~l~~L~~L~ 155 (169)
.+..+ ++.+.. +|.++.+|+.+.
T Consensus 316 ~lp~~-l~~I~~~aF~~C~~L~~i~ 339 (379)
T 4h09_A 316 TLPTA-LKTIQVYAFKNCKALSTIS 339 (379)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCCCC
T ss_pred EcCcc-ccEEHHHHhhCCCCCCEEE
Confidence 55432 444433 444445555444
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.40 E-value=0.0016 Score=48.71 Aligned_cols=96 Identities=15% Similarity=0.271 Sum_probs=55.9
Q ss_pred cCCCCccEEEeeCCcCcccccc-cccccceE-EEecccccCCcc-ccccccCCccCEEecCCCCCCCCcc-hhhhcCCCC
Q 038441 53 KSMKSLTMLILDGTTIRELPLS-VELLTGLL-LNLKDWQYLESL-PSTINGLKSFKILNLSSCSKLENVP-ENLGKVESL 128 (169)
Q Consensus 53 ~~~~~L~~L~l~~~~~~~lp~~-~~~~~~L~-l~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L 128 (169)
....+|+.+.+. +.++.++.. |..+.+|+ +.+..+ +..+ ...+.+|.+|+.+.+.. .+..+. .+|.+|.+|
T Consensus 285 ~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L 359 (394)
T 4gt6_A 285 MNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG--ITQILDDAFAGCEQLERIAIPS--SVTKIPESAFSNCTAL 359 (394)
T ss_dssp TTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEECT--TCCBCCGGGGTTCTTC
T ss_pred ccccccccccCC-CcccccCceeecCCCCcCEEEeCCc--ccEehHhHhhCCCCCCEEEECc--ccCEEhHhHhhCCCCC
Confidence 445667777764 345666554 66677888 877653 3333 34666778888888764 244454 467788888
Q ss_pred ceEeccCCcceecChhhhcCCCcceEE
Q 038441 129 EELDISRTAIRQLPTSIFLLKNLKAVD 155 (169)
Q Consensus 129 ~~L~l~~n~l~~~~~~~~~l~~L~~L~ 155 (169)
+.+++.++.... ..+.....|+.+.
T Consensus 360 ~~i~~~~~~~~~--~~~~~~~~L~~i~ 384 (394)
T 4gt6_A 360 NNIEYSGSRSQW--NAISTDSGLQNLP 384 (394)
T ss_dssp CEEEESSCHHHH--HTCBCCCCC----
T ss_pred CEEEECCceeeh--hhhhccCCCCEEE
Confidence 888887764321 2233444555555
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.30 E-value=0.0038 Score=46.30 Aligned_cols=91 Identities=11% Similarity=0.194 Sum_probs=63.4
Q ss_pred cCCCCccEEEeeCCcCcccccc-cccccceE-EEecccccCCccc-cccccCCccCEEecCCCCCCCCcc-hhhhcCCCC
Q 038441 53 KSMKSLTMLILDGTTIRELPLS-VELLTGLL-LNLKDWQYLESLP-STINGLKSFKILNLSSCSKLENVP-ENLGKVESL 128 (169)
Q Consensus 53 ~~~~~L~~L~l~~~~~~~lp~~-~~~~~~L~-l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L 128 (169)
....+++.+.+..+ ++.++.. +..+.+|+ +.+.++ .+..++ ..+.+|.+|+.+.+.. .+..+. .+|.++.+|
T Consensus 260 ~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~-~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L 335 (379)
T 4h09_A 260 QNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNS-AIETLEPRVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKAL 335 (379)
T ss_dssp TTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCT-TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTC
T ss_pred ceeehhcccccccc-ceecccccccccccccccccccc-ccceehhhhhcCCCCCCEEEcCc--cccEEHHHHhhCCCCC
Confidence 45567888887543 5666554 77788999 999865 444454 4777899999999974 355554 468899999
Q ss_pred ceEeccCCcceecCh-hhhcC
Q 038441 129 EELDISRTAIRQLPT-SIFLL 148 (169)
Q Consensus 129 ~~L~l~~n~l~~~~~-~~~~l 148 (169)
+.+.+..+ ++.+.. +|.+.
T Consensus 336 ~~i~ip~~-v~~I~~~aF~~c 355 (379)
T 4h09_A 336 STISYPKS-ITLIESGAFEGS 355 (379)
T ss_dssp CCCCCCTT-CCEECTTTTTTS
T ss_pred CEEEECCc-cCEEchhHhhCC
Confidence 99988654 665544 45444
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.23 E-value=0.0014 Score=49.00 Aligned_cols=79 Identities=11% Similarity=0.125 Sum_probs=50.3
Q ss_pred cCCCCccEEEeeCCcCcccccc-cccccceE-EEecccccCCccc-cccccCCccCEEecCCCCCCCCcchhhhcCCCCc
Q 038441 53 KSMKSLTMLILDGTTIRELPLS-VELLTGLL-LNLKDWQYLESLP-STINGLKSFKILNLSSCSKLENVPENLGKVESLE 129 (169)
Q Consensus 53 ~~~~~L~~L~l~~~~~~~lp~~-~~~~~~L~-l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 129 (169)
.+..+|+.+.+..+ ++.+... |..+.+|+ +.+..+ +..+. ..+.+|.+|+.+.+.++. . ....+..+..|+
T Consensus 308 ~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s--v~~I~~~aF~~C~~L~~i~~~~~~-~--~~~~~~~~~~L~ 381 (394)
T 4gt6_A 308 AGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS--VTKIPESAFSNCTALNNIEYSGSR-S--QWNAISTDSGLQ 381 (394)
T ss_dssp TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT--CCBCCGGGGTTCTTCCEEEESSCH-H--HHHTCBCCCCC-
T ss_pred cCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc--cCEEhHhHhhCCCCCCEEEECCce-e--ehhhhhccCCCC
Confidence 55678999998764 6777554 77889999 999764 44444 577899999999998732 1 123566677788
Q ss_pred eEeccCCc
Q 038441 130 ELDISRTA 137 (169)
Q Consensus 130 ~L~l~~n~ 137 (169)
.+.+..+.
T Consensus 382 ~i~i~~~~ 389 (394)
T 4gt6_A 382 NLPVAPGS 389 (394)
T ss_dssp --------
T ss_pred EEEeCCCC
Confidence 88776553
No 160
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.18 E-value=0.0076 Score=45.00 Aligned_cols=96 Identities=16% Similarity=0.179 Sum_probs=47.6
Q ss_pred cCCCCccEEEeeCCcCcccccccccccceE-EEecccccCCccc-cccccCCccCEEecCCCCCCCCcc-hhhhcCCCCc
Q 038441 53 KSMKSLTMLILDGTTIRELPLSVELLTGLL-LNLKDWQYLESLP-STINGLKSFKILNLSSCSKLENVP-ENLGKVESLE 129 (169)
Q Consensus 53 ~~~~~L~~L~l~~~~~~~lp~~~~~~~~L~-l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~ 129 (169)
.....++.+.+..+...--...+..+..++ +..... . ++ ..+..+.+|+.+.+.. .+..++ .+|.++.+|+
T Consensus 250 ~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~-~---i~~~~F~~~~~L~~i~l~~--~i~~I~~~aF~~c~~L~ 323 (394)
T 4fs7_A 250 YGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSV-I---VPEKTFYGCSSLTEVKLLD--SVKFIGEEAFESCTSLV 323 (394)
T ss_dssp TTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSS-E---ECTTTTTTCTTCCEEEECT--TCCEECTTTTTTCTTCC
T ss_pred cccccceeEEcCCCcceeeccccccccccceeccCce-e---ecccccccccccccccccc--ccceechhhhcCCCCCC
Confidence 334455555555442221122344455555 444332 1 22 2445566666666653 233443 3466666666
Q ss_pred eEeccCCcceecCh-hhhcCCCcceEE
Q 038441 130 ELDISRTAIRQLPT-SIFLLKNLKAVD 155 (169)
Q Consensus 130 ~L~l~~n~l~~~~~-~~~~l~~L~~L~ 155 (169)
.+++.. .++.++. .|.++.+|+.+.
T Consensus 324 ~i~lp~-~v~~I~~~aF~~c~~L~~i~ 349 (394)
T 4fs7_A 324 SIDLPY-LVEEIGKRSFRGCTSLSNIN 349 (394)
T ss_dssp EECCCT-TCCEECTTTTTTCTTCCEEC
T ss_pred EEEeCC-cccEEhHHhccCCCCCCEEE
Confidence 666653 3555544 556666666665
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.85 E-value=0.00086 Score=45.55 Aligned_cols=111 Identities=17% Similarity=0.117 Sum_probs=64.3
Q ss_pred cCCCCccEEEecCC-CCCCCCCCCCccccc---cCCCCccEEEeeCCcCcc-----cccccccccceE-EEecccccCCc
Q 038441 24 GRMEHLLVLRLLGT-AIRGLPICLKLEKFS---KSMKSLTMLILDGTTIRE-----LPLSVELLTGLL-LNLKDWQYLES 93 (169)
Q Consensus 24 ~~l~~L~~L~l~~n-~l~~~~~~~~l~~~~---~~~~~L~~L~l~~~~~~~-----lp~~~~~~~~L~-l~l~~~~~~~~ 93 (169)
..-+.|++|+++++ .+.+ .....+. ..-+.|+.|++++|.+.. +-+.+..-+.|+ |++++|.....
T Consensus 38 ~~n~~L~~L~L~~nn~igd----~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~ 113 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSK----ERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE 113 (197)
T ss_dssp TTCSSCCEEECTTCCSSCH----HHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH
T ss_pred hcCCCccEEECCCCCCCCH----HHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHH
Confidence 34567888888774 4443 2222222 444568888888887762 223344556788 88887743321
Q ss_pred ----cccccccCCccCEEecCCCC--CCCC-----cchhhhcCCCCceEeccCCcc
Q 038441 94 ----LPSTINGLKSFKILNLSSCS--KLEN-----VPENLGKVESLEELDISRTAI 138 (169)
Q Consensus 94 ----~~~~~~~~~~L~~L~l~~~~--~~~~-----~~~~~~~l~~L~~L~l~~n~l 138 (169)
+.+.+..-++|++|+++++. .++. +-+.+..-+.|+.++++.+.+
T Consensus 114 Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 114 LLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 22344455678888887531 2321 223445556788888876644
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.61 E-value=0.0028 Score=40.05 Aligned_cols=50 Identities=20% Similarity=0.267 Sum_probs=33.5
Q ss_pred EEEecCCCCCCCCCCCCcc--ccccCC-CCccEEEeeCCcCcccccc-cccccceE-EEecccc
Q 038441 31 VLRLLGTAIRGLPICLKLE--KFSKSM-KSLTMLILDGTTIRELPLS-VELLTGLL-LNLKDWQ 89 (169)
Q Consensus 31 ~L~l~~n~l~~~~~~~~l~--~~~~~~-~~L~~L~l~~~~~~~lp~~-~~~~~~L~-l~l~~~~ 89 (169)
+++-++ ..++ .+|..+ ++++.|++++|.++.+|+. +..+++|+ +++.+|.
T Consensus 12 ~v~Cs~---------~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGR---------RGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCS---------SCCCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCC---------CCCccccCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 566666 4444 566333 4678888888888877665 56677777 7777763
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.37 E-value=0.0026 Score=43.21 Aligned_cols=102 Identities=16% Similarity=0.132 Sum_probs=57.7
Q ss_pred cCCCCccEEEeeCC-cCcc-----cccccccccceE-EEecccccCCc----cccccccCCccCEEecCCCCCCCC----
Q 038441 53 KSMKSLTMLILDGT-TIRE-----LPLSVELLTGLL-LNLKDWQYLES----LPSTINGLKSFKILNLSSCSKLEN---- 117 (169)
Q Consensus 53 ~~~~~L~~L~l~~~-~~~~-----lp~~~~~~~~L~-l~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~---- 117 (169)
..-+.|+.|+++++ .+.. +-+.+..-+.|+ |++++|..... +...+..-++|++|+++. |.++.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~-N~Ig~~Ga~ 116 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVES-NFLTPELLA 116 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCS-SBCCHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCC-CcCCHHHHH
Confidence 44456778888775 6651 233455566777 88877743321 233444556788888877 44432
Q ss_pred -cchhhhcCCCCceEeccCC---cce-----ecChhhhcCCCcceEE
Q 038441 118 -VPENLGKVESLEELDISRT---AIR-----QLPTSIFLLKNLKAVD 155 (169)
Q Consensus 118 -~~~~~~~l~~L~~L~l~~n---~l~-----~~~~~~~~l~~L~~L~ 155 (169)
+-+++..-..|+.|+++++ .+. .+...+..-+.|+.|+
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~ 163 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVG 163 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEE
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEe
Confidence 2223444456888888654 233 1233344556677777
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.08 E-value=0.016 Score=36.52 Aligned_cols=53 Identities=21% Similarity=0.232 Sum_probs=37.7
Q ss_pred EEecccccCC--ccccccccCCccCEEecCCCCCCCCcch-hhhcCCCCceEeccCCcce
Q 038441 83 LNLKDWQYLE--SLPSTINGLKSFKILNLSSCSKLENVPE-NLGKVESLEELDISRTAIR 139 (169)
Q Consensus 83 l~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~ 139 (169)
++.+++ ... .+|.. -..++++|++++ |.+..++. .|..+++|+.|++.+|.+.
T Consensus 13 v~Cs~~-~L~~~~vP~~--lp~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 13 VDCGRR-GLTWASLPTA--FPVDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EECCSS-CCCTTTSCSC--CCTTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEeCCC-CCccccCCCC--CCcCCCEEECCC-CcCCccChhhhhhccccCEEEecCCCee
Confidence 455554 344 56653 234689999998 67777765 4678899999999998765
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=69.79 E-value=5.8 Score=23.34 Aligned_cols=44 Identities=11% Similarity=0.024 Sum_probs=24.9
Q ss_pred cCcccccc-cccccceE-EEecccccCCccccccccCCccCEEecCC
Q 038441 67 TIRELPLS-VELLTGLL-LNLKDWQYLESLPSTINGLKSFKILNLSS 111 (169)
Q Consensus 67 ~~~~lp~~-~~~~~~L~-l~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 111 (169)
.++.+... |..+.+|+ +.+..+ ....-...|.+|.+|+.+.+.+
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 44445333 56666777 767653 3322234566677777776665
Done!