Query 038443
Match_columns 92
No_of_seqs 93 out of 95
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 11:07:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038443.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038443hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00213 predicted protein; Pr 100.0 1.1E-30 2.3E-35 183.2 5.1 73 6-83 43-117 (118)
2 PF05617 Prolamin_like: Prolam 99.8 5.1E-22 1.1E-26 124.4 3.6 64 10-74 1-70 (70)
3 PLN00214 putative protein; Pro 84.7 0.84 1.8E-05 32.4 2.3 37 19-57 45-85 (115)
4 cd04660 nsLTP_like nsLTP_like: 50.6 6.6 0.00014 24.5 0.5 37 14-54 4-42 (73)
5 smart00499 AAI Plant lipid tra 43.3 12 0.00026 21.8 0.8 39 11-54 1-43 (79)
6 cd01960 nsLTP1 nsLTP1: Non-spe 42.2 22 0.00048 22.6 2.0 35 10-49 2-37 (89)
7 cd00010 AAI_LTSS AAI_LTSS: Alp 40.2 28 0.0006 20.4 2.1 21 29-49 7-28 (63)
8 cd03727 SOCS_ASB8 SOCS (suppre 23.7 64 0.0014 19.1 1.6 32 37-72 7-39 (43)
9 PF00234 Tryp_alpha_amyl: Prot 21.3 48 0.001 20.6 0.9 25 28-52 20-45 (90)
10 PF14368 LTP_2: Probable lipid 20.8 30 0.00065 21.5 -0.2 31 29-59 35-68 (96)
No 1
>PLN00213 predicted protein; Provisional
Probab=99.96 E-value=1.1e-30 Score=183.25 Aligned_cols=73 Identities=22% Similarity=0.504 Sum_probs=67.2
Q ss_pred CCccchhhhhccCcchHHHHHHHHHhCccc-cChhchHHHHHhhhCcccccccCCCCCcchhhHHhhhcccC-CCCCCCc
Q 038443 6 GGLTECWNTLMELKSCSNENVILFLNSQAD-IGPDYCRAIDIITRNCWPAMLTSLEFTAKEGNILRGYYDAS-SAPSPAA 83 (92)
Q Consensus 6 ~~~~~Cwssl~~v~gC~~EI~~~f~~G~~~-igp~CC~Ai~~i~~~CWP~mf~~~pf~~~e~~~Lkg~C~~~-~~~sPa~ 83 (92)
.+..||||||++++||+.||++++++||++ ||++|||||++++ +|||+| |++||||+ +||++|+++ .+++|+|
T Consensus 43 pd~~kCwSSl~~vpGCv~EI~~si~~gkf~~Ig~aCCKAf~~~d-nCwP~~-P~~P~fPp---~LK~~Cs~i~~~~~~~~ 117 (118)
T PLN00213 43 PDITKCFSSVMDIPGCIAEISQSIFTGKFGNLGPACCKAFLDAD-NCIPKI-PFIPFFPP---MLKEQCSRVAGATPPIP 117 (118)
T ss_pred ccHHHHHHHHcCCcchHHHHHHHHHhchhcccchHHHHHHHhhh-ccccCC-cCCCccch---HHHHHHhcccCCCCCCC
Confidence 478999999999999999999999999997 9999999999966 999996 99999998 999999998 5556665
No 2
>PF05617 Prolamin_like: Prolamin-like; InterPro: IPR008502 This entry consists of several proteins of unknown function found exclusively in Arabidopsis thaliana.
Probab=99.85 E-value=5.1e-22 Score=124.38 Aligned_cols=64 Identities=27% Similarity=0.608 Sum_probs=55.9
Q ss_pred chhhhhccCcchHHHHHHHHHhCcc-ccChhchHHHHHhhhCcccc---cccCCCCCcc--hhhHHhhhcc
Q 038443 10 ECWNTLMELKSCSNENVILFLNSQA-DIGPDYCRAIDIITRNCWPA---MLTSLEFTAK--EGNILRGYYD 74 (92)
Q Consensus 10 ~Cwssl~~v~gC~~EI~~~f~~G~~-~igp~CC~Ai~~i~~~CWP~---mf~~~pf~~~--e~~~Lkg~C~ 74 (92)
|||++++++++|++||+.+|++|+. .||++||+||+.++++|||+ ||++.|++++ + ++|+++|+
T Consensus 1 kc~~~~~~~~~C~~eI~~~~~~g~~~~i~~~CC~~i~~~g~~C~~~l~~~~~~~p~~~~~~r-~~l~~~C~ 70 (70)
T PF05617_consen 1 KCLSSCAKSPGCGDEIFNSFFNGNKKNIGPECCKAINKMGKDCHPALFKMFPFTPFFKPLLR-DLLWNHCS 70 (70)
T ss_pred ChHHHcCCccchHHHHHHHHHcCCCCCCChHHHHHHHHHhHhHHHHHHHHccCCCCccchhH-HHHHhhcC
Confidence 6999999999999999999999994 59999999999999999999 5555555554 3 49999996
No 3
>PLN00214 putative protein; Provisional
Probab=84.69 E-value=0.84 Score=32.40 Aligned_cols=37 Identities=11% Similarity=0.297 Sum_probs=30.4
Q ss_pred cchHHHHHHHHH-hCccccChhchHHHHHhhhCc---cccccc
Q 038443 19 KSCSNENVILFL-NSQADIGPDYCRAIDIITRNC---WPAMLT 57 (92)
Q Consensus 19 ~gC~~EI~~~f~-~G~~~igp~CC~Ai~~i~~~C---WP~mf~ 57 (92)
+-|..||+..++ ||. +...||+-+...+.+| |=++|.
T Consensus 45 ~KCa~EI~a~i~~N~t--~s~~CC~~LVk~GK~CH~~LiK~i~ 85 (115)
T PLN00214 45 PKCALDIIAVVFENGT--LIDPCCNDLVKEGKVCHDTLIKYIA 85 (115)
T ss_pred HhhHHHHHHHHHcCCC--CchHHHHHHHHHhhHHHHHHHHHHH
Confidence 459999999999 666 5889999999999999 444444
No 4
>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3. Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.
Probab=50.59 E-value=6.6 Score=24.46 Aligned_cols=37 Identities=16% Similarity=0.257 Sum_probs=23.0
Q ss_pred hhccCcchHHHHHHHHHhCc--cccChhchHHHHHhhhCcccc
Q 038443 14 TLMELKSCSNENVILFLNSQ--ADIGPDYCRAIDIITRNCWPA 54 (92)
Q Consensus 14 sl~~v~gC~~EI~~~f~~G~--~~igp~CC~Ai~~i~~~CWP~ 54 (92)
++..+..|.. ++..|. ..-..+||.+|+.++..|-=.
T Consensus 4 ~~~~L~~C~~----yl~~~~~~~~Ps~~CC~~vk~~~~~C~C~ 42 (73)
T cd04660 4 DLDLLAECQP----YVTGPNPPPPPSRECCAALRRADLPCLCR 42 (73)
T ss_pred CHHHHHHHHH----HHcCCCCCCCCCHHHHHHHHcCCcCCEee
Confidence 3445556653 333333 236778999999987777543
No 5
>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family.
Probab=43.34 E-value=12 Score=21.82 Aligned_cols=39 Identities=21% Similarity=0.437 Sum_probs=25.0
Q ss_pred hhhhhccCcchHHHHHHHHHhCc---cccChhchHHHHHh-hhCcccc
Q 038443 11 CWNTLMELKSCSNENVILFLNSQ---ADIGPDYCRAIDII-TRNCWPA 54 (92)
Q Consensus 11 Cwssl~~v~gC~~EI~~~f~~G~---~~igp~CC~Ai~~i-~~~CWP~ 54 (92)
|...+.++.+|..- +++. ......||.++..+ ...|.=.
T Consensus 1 C~~~~~~~~~c~~~-----~~~~~~~~~p~~~CC~~l~~~~~~~C~C~ 43 (79)
T smart00499 1 CGQVLLQLAPCLSY-----LTGGSPGAPPSQQCCSQLRGLNSAQCRCL 43 (79)
T ss_pred ChhhhhhHHhhHHH-----HcCCCCCCCCchHHHHHHHHhcccCCcch
Confidence 34445555555533 3333 34778899999999 8888654
No 6
>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.
Probab=42.17 E-value=22 Score=22.58 Aligned_cols=35 Identities=17% Similarity=0.439 Sum_probs=23.7
Q ss_pred chhhhhccCcchHHHHHHHHHhCccc-cChhchHHHHHhhh
Q 038443 10 ECWNTLMELKSCSNENVILFLNSQAD-IGPDYCRAIDIITR 49 (92)
Q Consensus 10 ~Cwssl~~v~gC~~EI~~~f~~G~~~-igp~CC~Ai~~i~~ 49 (92)
+|=..+..+..|.. |++|... -.+.||.+++.+..
T Consensus 2 ~C~~v~~~l~~C~~-----y~~g~~~~Ps~~CC~~v~~l~~ 37 (89)
T cd01960 2 SCGQVTSLLAPCLG-----YLTGGGPAPSPACCSGVKSLNG 37 (89)
T ss_pred CHHHHHhhHHhHHH-----HHhCCCCCCChHHhhhhHHHhh
Confidence 35556666677763 3445544 88999999999753
No 7
>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins. Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.
Probab=40.20 E-value=28 Score=20.40 Aligned_cols=21 Identities=19% Similarity=0.487 Sum_probs=15.7
Q ss_pred HHhCcc-ccChhchHHHHHhhh
Q 038443 29 FLNSQA-DIGPDYCRAIDIITR 49 (92)
Q Consensus 29 f~~G~~-~igp~CC~Ai~~i~~ 49 (92)
|++|.. .-.+.||.+++.+.+
T Consensus 7 y~~~~~~~Ps~~CC~~l~~~~~ 28 (63)
T cd00010 7 YLTGGATAPPSDCCSGLKSVVK 28 (63)
T ss_pred HHcCCCCCCChHHHHHHHHHHh
Confidence 345553 488899999999964
No 8
>cd03727 SOCS_ASB8 SOCS (suppressors of cytokine signaling) box of ASB8-like proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. Human ASB8 is highly transcribed in skeletal muscle and in lung carcinoma cell lines. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=23.69 E-value=64 Score=19.08 Aligned_cols=32 Identities=13% Similarity=0.142 Sum_probs=21.7
Q ss_pred ChhchHHHHHhh-hCcccccccCCCCCcchhhHHhhh
Q 038443 37 GPDYCRAIDIIT-RNCWPAMLTSLEFTAKEGNILRGY 72 (92)
Q Consensus 37 gp~CC~Ai~~i~-~~CWP~mf~~~pf~~~e~~~Lkg~ 72 (92)
-.-|..||+..- .+|-+...+.+|. |+ .||+|
T Consensus 7 q~LcR~aiR~~lg~~~l~~aI~~LpL-P~---sLK~Y 39 (43)
T cd03727 7 KALARYAVRRSLGVQYLPEAVKQLPL-PR---SVKEY 39 (43)
T ss_pred HHHHHHHHHHHHhhhhHHhhcccCCC-CH---HHHHH
Confidence 356888888654 5655554587874 55 88887
No 9
>PF00234 Tryp_alpha_amyl: Protease inhibitor/seed storage/LTP family This is a small subfamily; InterPro: IPR003612 This domain is found is several proteins, including plant lipid transfer proteins [], seed storage proteins [] and trypsin-alpha amylase inhibitors [, ]. The domain forms a four-helical bundle in a right-handed superhelix with a folded leaf topology, which is stabilised by disulphide bonds, and which has an internal cavity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; PDB: 1BFA_A 1BEA_A 1MID_A 1BE2_A 1LIP_A 3GSH_A 1JTB_A 1UVC_B 1BV2_A 1UVB_A ....
Probab=21.32 E-value=48 Score=20.57 Aligned_cols=25 Identities=12% Similarity=0.431 Sum_probs=19.3
Q ss_pred HHHhCccc-cChhchHHHHHhhhCcc
Q 038443 28 LFLNSQAD-IGPDYCRAIDIITRNCW 52 (92)
Q Consensus 28 ~f~~G~~~-igp~CC~Ai~~i~~~CW 52 (92)
.+.+|... .-..||..++.|+..|.
T Consensus 20 ~~~~~~~~~~~~~CC~~L~~l~~~C~ 45 (90)
T PF00234_consen 20 PYLQGGCQQPSQQCCQQLRQLDPQCR 45 (90)
T ss_dssp HHHTTSSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcccccchHHHhHHHHHHhHHhh
Confidence 35566554 78889999999988774
No 10
>PF14368 LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A 1TUK_A.
Probab=20.81 E-value=30 Score=21.53 Aligned_cols=31 Identities=16% Similarity=0.381 Sum_probs=18.2
Q ss_pred HHhCccccChhchHHHHHh---hhCcccccccCC
Q 038443 29 FLNSQADIGPDYCRAIDII---TRNCWPAMLTSL 59 (92)
Q Consensus 29 f~~G~~~igp~CC~Ai~~i---~~~CWP~mf~~~ 59 (92)
+.++...-.+.||.+++.+ +.+|.=.++...
T Consensus 35 ~~~~~~~Ps~~CC~~l~~~~~~~~~ClC~~~~~~ 68 (96)
T PF14368_consen 35 YVTGGPAPSAACCSALKSVVQADPPCLCQLLNSP 68 (96)
T ss_dssp HHCC-----HHHHHHHCC----HCCHHHCCCC-C
T ss_pred ccCCCCCCCHHHHHHHHHhccCCCCCHHHhcCcc
Confidence 4556666999999999997 778866555543
Done!