Query 038443
Match_columns 92
No_of_seqs 93 out of 95
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 19:18:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038443.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038443hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1bwo_A NS-LTP1, nonspecific li 19.0 62 0.0021 20.0 2.0 61 11-76 3-76 (90)
2 2ljo_A Non-specific lipid-tran 15.8 91 0.0031 19.6 2.2 33 11-48 4-36 (93)
3 1afh_A Maize nonspecific lipid 15.8 78 0.0027 19.6 1.9 62 10-76 3-78 (93)
4 2ebo_A Ebola virus envelope gl 15.0 31 0.0011 21.6 -0.2 8 36-43 48-55 (74)
5 1n89_A Lipid transfer protein; 14.8 99 0.0034 18.0 2.1 31 17-53 6-36 (67)
6 1l6h_A LTP2, non-specific lipi 13.9 86 0.003 18.4 1.6 30 17-52 7-36 (69)
7 2alg_A Non-specific lipid tran 13.1 96 0.0033 19.1 1.7 62 10-76 3-77 (92)
8 1siy_A LTP 1, NS-LTP1, nonspec 12.5 1.3E+02 0.0044 18.5 2.2 61 11-76 3-76 (91)
9 2knp_A Mcocc-1; disulfide-rich 12.0 40 0.0014 18.1 -0.3 11 49-59 17-27 (33)
10 1ebo_A Ebola virus envelope pr 11.6 46 0.0016 22.8 -0.2 7 36-42 85-91 (131)
No 1
>1bwo_A NS-LTP1, nonspecific lipid-transfer protein; wheat, lipid binding, crystallography; HET: LPC; 2.10A {Triticum aestivum} SCOP: a.52.1.1 PDB: 1cz2_A* 1gh1_A 1be2_A* 1jtb_A* 1lip_A 1mid_A* 3cee_A* 3gsh_A*
Probab=18.97 E-value=62 Score=20.02 Aligned_cols=61 Identities=8% Similarity=0.245 Sum_probs=35.7
Q ss_pred hhhhhccCcchHHHHHHHHHhCccccChhchHHHHHhhh------------CcccccccCC-CCCcchhhHHhhhcccC
Q 038443 11 CWNTLMELKSCSNENVILFLNSQADIGPDYCRAIDIITR------------NCWPAMLTSL-EFTAKEGNILRGYYDAS 76 (92)
Q Consensus 11 Cwssl~~v~gC~~EI~~~f~~G~~~igp~CC~Ai~~i~~------------~CWP~mf~~~-pf~~~e~~~Lkg~C~~~ 76 (92)
|=+.+.++..|..-+ +|.....++||.+++.+.. .|.-....++ ++-+.-+.-|-+-|.-.
T Consensus 3 C~~v~~~L~pCl~y~-----~~~~~Ps~~CC~~lk~l~~~a~t~~dr~~~ClClk~~~~~~~~in~~~A~~LP~~C~v~ 76 (90)
T 1bwo_A 3 CGHVDSLVRPCLSYV-----QGGPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHNLNEDNARSIPPKCGVN 76 (90)
T ss_dssp HHHHHHHHGGGHHHH-----TTCSCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHTTCTTCCHHHHHTHHHHHTCC
T ss_pred HHHHHHhhcccHHHH-----cCCCCCCHHHhHHHHHHHhhccCCCCCCccCcCccCchhccCCcCHHHHHHHHHHcCCC
Confidence 445556666676433 3333377789999998763 4553333344 34444455666777553
No 2
>2ljo_A Non-specific lipid-transfer protein 2; lipid transport; NMR {Lens culinaris}
Probab=15.81 E-value=91 Score=19.56 Aligned_cols=33 Identities=18% Similarity=0.496 Sum_probs=21.0
Q ss_pred hhhhhccCcchHHHHHHHHHhCccccChhchHHHHHhh
Q 038443 11 CWNTLMELKSCSNENVILFLNSQADIGPDYCRAIDIIT 48 (92)
Q Consensus 11 Cwssl~~v~gC~~EI~~~f~~G~~~igp~CC~Ai~~i~ 48 (92)
|=+.+..+-.|. .|+.|.....+.||..++.+.
T Consensus 4 C~~v~~~L~pCl-----~Yv~g~~~p~~~CC~gv~~l~ 36 (93)
T 2ljo_A 4 CGAVTSDLSPCL-----TYLTGGPGPSPQCCGGVKKLL 36 (93)
T ss_dssp SHHHHHHHHHHH-----HHHTTSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhHH-----HHHcCCCCCCCchhhHHHHHH
Confidence 334444455554 244555458899999999885
No 3
>1afh_A Maize nonspecific lipid transfer protein; lipid-binding protein, molecular modeling,; NMR {Zea mays} SCOP: a.52.1.1 PDB: 1fk0_A* 1fk1_A* 1fk2_A* 1fk3_A* 1fk4_A* 1fk5_A* 1fk6_A* 1fk7_A* 1mzl_A 1mzm_A* 1bv2_A 1rzl_A* 1uva_A* 1uvb_A* 1uvc_A*
Probab=15.75 E-value=78 Score=19.62 Aligned_cols=62 Identities=13% Similarity=0.281 Sum_probs=35.6
Q ss_pred chhhhhccCcchHHHHHHHHHhCccc-cChhchHHHHHhh----------h--CcccccccCC-CCCcchhhHHhhhccc
Q 038443 10 ECWNTLMELKSCSNENVILFLNSQAD-IGPDYCRAIDIIT----------R--NCWPAMLTSL-EFTAKEGNILRGYYDA 75 (92)
Q Consensus 10 ~Cwssl~~v~gC~~EI~~~f~~G~~~-igp~CC~Ai~~i~----------~--~CWP~mf~~~-pf~~~e~~~Lkg~C~~ 75 (92)
.|=+.+..+..|..- ++|... -.++||.+++.+. . .|--....++ ++-+.-+--|-+.|.-
T Consensus 3 ~C~~v~~~L~pCl~y-----~~~~~~~Ps~~CC~gv~~l~~~a~t~~dr~~~ClC~~~~~~~~~~in~~~A~~LP~~C~v 77 (93)
T 1afh_A 3 SCGQVASAIAPCISY-----ARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGV 77 (93)
T ss_dssp SSHHHHHHHGGGHHH-----HTTSCCSCCHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHC
T ss_pred ChHHHHHhccCcHHH-----HcCCCCCChHHHHHHHHHHHHhhcCCCCCcccCEeeccccccccCcCHHHHHHHHHHcCC
Confidence 355556666667643 344444 6678999999995 2 4443222333 3444445567777865
Q ss_pred C
Q 038443 76 S 76 (92)
Q Consensus 76 ~ 76 (92)
.
T Consensus 78 ~ 78 (93)
T 1afh_A 78 S 78 (93)
T ss_dssp C
T ss_pred C
Confidence 3
No 4
>2ebo_A Ebola virus envelope glycoprotein; filovirus, GP2, coat protein; 1.90A {Zaire ebolavirus - mayinga} SCOP: h.3.2.1
Probab=15.03 E-value=31 Score=21.59 Aligned_cols=8 Identities=38% Similarity=0.804 Sum_probs=6.7
Q ss_pred cChhchHH
Q 038443 36 IGPDYCRA 43 (92)
Q Consensus 36 igp~CC~A 43 (92)
+||+||-.
T Consensus 48 lgpdc~i~ 55 (74)
T 2ebo_A 48 LGPDCAIE 55 (74)
T ss_dssp HGGGGGCC
T ss_pred cCCccccC
Confidence 99999953
No 5
>1n89_A Lipid transfer protein; lipid transport; HET: PGM; NMR {Triticum turgidum subsp} SCOP: a.52.1.1 PDB: 1tuk_A*
Probab=14.83 E-value=99 Score=18.04 Aligned_cols=31 Identities=19% Similarity=0.490 Sum_probs=19.8
Q ss_pred cCcchHHHHHHHHHhCccccChhchHHHHHhhhCccc
Q 038443 17 ELKSCSNENVILFLNSQADIGPDYCRAIDIITRNCWP 53 (92)
Q Consensus 17 ~v~gC~~EI~~~f~~G~~~igp~CC~Ai~~i~~~CWP 53 (92)
++..|...| ..| ....++||.+++.. ..|.=
T Consensus 6 ~L~pC~~~v----~~~-~~Ps~~CC~~lk~~-~~ClC 36 (67)
T 1n89_A 6 QLAVCASAI----LSG-AKPSGECCGNLRAQ-QGCFC 36 (67)
T ss_dssp TTHHHHHHH----TTC-CCCCHHHHHHHHHH-SSHHH
T ss_pred hcccCHHHH----cCC-CCCCHHHHHhhCCC-CCCCC
Confidence 344565443 333 34888999999976 56643
No 6
>1l6h_A LTP2, non-specific lipid transfer protein; NSLTP2, plant LTP, lipid transport; NMR {Oryza sativa} SCOP: a.52.1.1
Probab=13.90 E-value=86 Score=18.42 Aligned_cols=30 Identities=17% Similarity=0.469 Sum_probs=19.1
Q ss_pred cCcchHHHHHHHHHhCccccChhchHHHHHhhhCcc
Q 038443 17 ELKSCSNENVILFLNSQADIGPDYCRAIDIITRNCW 52 (92)
Q Consensus 17 ~v~gC~~EI~~~f~~G~~~igp~CC~Ai~~i~~~CW 52 (92)
++..|..-| ..| ....++||.+++.. ..|.
T Consensus 7 ~L~pC~~~v----~~~-~~Ps~~CC~~lk~~-~~Cl 36 (69)
T 1l6h_A 7 QLTVCTGAI----AGG-ARPTAACCSSLRAQ-QGCF 36 (69)
T ss_dssp THHHHHHHH----TTC-CSTTHHHHHHHHHH-HHHH
T ss_pred hcccCHHHH----cCC-CCCCHHHHHhhCCC-CCCC
Confidence 344465433 333 34888999999976 5664
No 7
>2alg_A Non-specific lipid transfer protein; LTP, NS-LTP, FOOD allergen, lipid transport; HET: DAO P6G; 2.30A {Prunus persica} PDB: 2b5s_A*
Probab=13.07 E-value=96 Score=19.15 Aligned_cols=62 Identities=19% Similarity=0.357 Sum_probs=37.1
Q ss_pred chhhhhccCcchHHHHHHHHHhCccccChhchHHHHHhh-------h-----CcccccccCC-CCCcchhhHHhhhcccC
Q 038443 10 ECWNTLMELKSCSNENVILFLNSQADIGPDYCRAIDIIT-------R-----NCWPAMLTSL-EFTAKEGNILRGYYDAS 76 (92)
Q Consensus 10 ~Cwssl~~v~gC~~EI~~~f~~G~~~igp~CC~Ai~~i~-------~-----~CWP~mf~~~-pf~~~e~~~Lkg~C~~~ 76 (92)
.|=..+.++..|..-+ ..| ....++||.+++.+. | .|--...+++ ++-+.-+.-|-+.|.-.
T Consensus 3 ~C~~v~~~L~pCl~y~----~~~-~~p~~~CC~~lk~l~~~a~t~~d~~~~ClC~~~~~~~~~~in~~~A~~LP~~Cgv~ 77 (92)
T 2alg_A 3 TCGQVSSSLAPCIPYV----RGG-GAVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVS 77 (92)
T ss_dssp CHHHHHHHHGGGHHHH----HHC-SCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTTCC
T ss_pred ChHHHHHhccCcHHHH----cCC-CCCCHHHHHHHHHHHhhhcccCCCCcCCccccCcccccCccChHHHHHHHHHcCCC
Confidence 3555566677777544 233 347789999999975 3 4443333333 44455556677778653
No 8
>1siy_A LTP 1, NS-LTP1, nonspecific lipid-transfer protein 1; alpha helix, lipid binding protein; NMR {Vigna radiata var}
Probab=12.52 E-value=1.3e+02 Score=18.52 Aligned_cols=61 Identities=20% Similarity=0.364 Sum_probs=33.9
Q ss_pred hhhhhccCcchHHHHHHHHHhCccccChhchHHHHHhh--------h--Cc--ccccccCC-CCCcchhhHHhhhcccC
Q 038443 11 CWNTLMELKSCSNENVILFLNSQADIGPDYCRAIDIIT--------R--NC--WPAMLTSL-EFTAKEGNILRGYYDAS 76 (92)
Q Consensus 11 Cwssl~~v~gC~~EI~~~f~~G~~~igp~CC~Ai~~i~--------~--~C--WP~mf~~~-pf~~~e~~~Lkg~C~~~ 76 (92)
|=..+..+..|..- ++|...-.++||.+++.+. . .| --....+. ++-+.-+.-|=+.|.-.
T Consensus 3 C~~v~~~L~pCl~y-----v~~~~~Ps~~CC~~lk~l~~~a~t~~d~~~~ClC~k~~~~~~~~in~~~A~~LP~~Cgv~ 76 (91)
T 1siy_A 3 CGQVQGNLAQCIGF-----LQKGGVVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVRGINPNNAEALPGKCGVN 76 (91)
T ss_dssp TTTTHHHHHHHHHH-----HTSCSCCCHHHHHHHHHHHTTTCSSHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHTCC
T ss_pred HHHHHHhccCcHHH-----HhCCCCCcHHHHHHHHHHHhhhccCCCCCcCCcccCCcccccCCcCHHHHHHHHHHcCCC
Confidence 33444555556543 3333337778999999973 1 34 43333344 34444455677778653
No 9
>2knp_A Mcocc-1; disulfide-rich peptides, cystine knot motif, cytotoxic, melanoma cell LINE, non-hemolytic, seeds extract, unknown function; NMR {Momordica cochinchinensis}
Probab=12.03 E-value=40 Score=18.07 Aligned_cols=11 Identities=27% Similarity=1.047 Sum_probs=7.3
Q ss_pred hCcccccccCC
Q 038443 49 RNCWPAMLTSL 59 (92)
Q Consensus 49 ~~CWP~mf~~~ 59 (92)
-+|||.+-|..
T Consensus 17 crcwptvtpgv 27 (33)
T 2knp_A 17 CRCWPTVTPGV 27 (33)
T ss_dssp CCEEECSSTTE
T ss_pred eeeccccCCCe
Confidence 37899875543
No 10
>1ebo_A Ebola virus envelope protein chimera consisting of A fragment of GCN4 zipper cloned...; membrane fusion subunit, viral protein; 3.00A {Ebola virus SP} SCOP: h.3.2.1
Probab=11.63 E-value=46 Score=22.84 Aligned_cols=7 Identities=43% Similarity=0.790 Sum_probs=6.3
Q ss_pred cChhchH
Q 038443 36 IGPDYCR 42 (92)
Q Consensus 36 igp~CC~ 42 (92)
+||+||-
T Consensus 85 LGPdCcI 91 (131)
T 1ebo_A 85 LGPDCRI 91 (131)
T ss_dssp HGGGGGC
T ss_pred cCCcccc
Confidence 9999994
Done!