Query 038443
Match_columns 92
No_of_seqs 93 out of 95
Neff 4.3
Searched_HMMs 13730
Date Mon Mar 25 19:18:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038443.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/038443hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1mida_ a.52.1.1 (A:) Plant no 30.4 14 0.001 21.7 2.1 61 11-76 3-76 (91)
2 d1fk5a_ a.52.1.1 (A:) Plant no 30.2 14 0.00098 21.8 2.0 62 10-76 3-78 (93)
3 d1k8rb_ d.15.1.5 (B:) Protein 11.9 46 0.0033 20.2 1.5 21 15-36 14-34 (95)
4 d1hssa_ a.52.1.2 (A:) 0.19 alp 7.1 85 0.0062 19.7 1.4 36 17-53 12-50 (120)
5 d1kyqa2 e.37.1.1 (A:151-273) B 7.1 78 0.0057 19.5 1.2 17 58-74 107-123 (123)
6 d1gvda_ a.4.1.3 (A:) c-Myb, DN 5.8 89 0.0065 16.0 0.8 18 58-75 3-20 (52)
7 d1gv2a2 a.4.1.3 (A:144-190) c- 5.6 93 0.0068 15.7 0.8 17 59-75 2-18 (47)
8 d1bdsa_ g.9.1.1 (A:) BDs-I def 5.6 54 0.004 17.1 -0.2 8 48-55 29-38 (43)
9 d2cqea2 g.66.1.1 (A:429-457) Z 5.3 66 0.0048 15.6 0.0 9 68-76 12-20 (29)
10 d1dsqa_ g.40.1.1 (A:) Nucleic 4.7 97 0.0071 14.5 0.4 11 30-40 7-18 (26)
No 1
>d1mida_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Barley (Hordeum vulgare) [TaxId: 4513]}
Probab=30.44 E-value=14 Score=21.71 Aligned_cols=61 Identities=10% Similarity=0.317 Sum_probs=35.7
Q ss_pred hhhhhccCcchHHHHHHHHHhCccccChhchHHHHHhhh------------CcccccccC-CCCCcchhhHHhhhcccC
Q 038443 11 CWNTLMELKSCSNENVILFLNSQADIGPDYCRAIDIITR------------NCWPAMLTS-LEFTAKEGNILRGYYDAS 76 (92)
Q Consensus 11 Cwssl~~v~gC~~EI~~~f~~G~~~igp~CC~Ai~~i~~------------~CWP~mf~~-~pf~~~e~~~Lkg~C~~~ 76 (92)
|=+.+..+-.|. .|++|.....+.||.+++.+.. +|.-.+-.. .++-..-..-|=+-|.-.
T Consensus 3 C~~v~~~l~pCl-----~Yl~g~~~P~~~CC~gv~~L~~~a~t~~d~~~lC~cl~~~~~~~~~in~~ra~~LP~~C~v~ 76 (91)
T d1mida_ 3 CGQVDSKMKPCL-----TYVQGGPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHNLNLNNAASIPSKCNVN 76 (91)
T ss_dssp HHHHHHHHGGGH-----HHHTTCSCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhhH-----HHHcCCCCCCcchhhhHHHHHHHhcCCCcHHHHHHhhhhhcccCCCcCHHHHHhchHhcCCC
Confidence 445555666665 3456665699999999988863 233332222 233444455666777553
No 2
>d1fk5a_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Maize (Zea mays) [TaxId: 4577]}
Probab=30.20 E-value=14 Score=21.80 Aligned_cols=62 Identities=13% Similarity=0.283 Sum_probs=36.2
Q ss_pred chhhhhccCcchHHHHHHHHHhCccc-cChhchHHHHHhhh------------Cccccccc-CCCCCcchhhHHhhhccc
Q 038443 10 ECWNTLMELKSCSNENVILFLNSQAD-IGPDYCRAIDIITR------------NCWPAMLT-SLEFTAKEGNILRGYYDA 75 (92)
Q Consensus 10 ~Cwssl~~v~gC~~EI~~~f~~G~~~-igp~CC~Ai~~i~~------------~CWP~mf~-~~pf~~~e~~~Lkg~C~~ 75 (92)
.|=..+..+-.|. .|++|... -.+.||.+++.+.+ +|.-.... ..|+-+.-..-|=.-|.-
T Consensus 3 ~C~~v~~~l~pCl-----~Yltg~~~~Ps~~CC~gv~~l~~~a~t~~dr~~lC~cl~~~~~~~~~in~~ra~~LP~~C~v 77 (93)
T d1fk5a_ 3 SCGQVASAIAPCI-----SYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGV 77 (93)
T ss_dssp CHHHHHHHHGGGH-----HHHTTCSSSCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHTTC
T ss_pred CHHHHHHHhhhhH-----HHHhCCCCCCCCchhHHHHHHHHHccCCccHHHHHHhhhhcccccCCcCHHHHHhhhHhcCC
Confidence 3555556666665 34566655 78899999998863 23333222 224444445556667754
Q ss_pred C
Q 038443 76 S 76 (92)
Q Consensus 76 ~ 76 (92)
.
T Consensus 78 ~ 78 (93)
T d1fk5a_ 78 S 78 (93)
T ss_dssp C
T ss_pred C
Confidence 3
No 3
>d1k8rb_ d.15.1.5 (B:) Protein kinase byr2 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=11.92 E-value=46 Score=20.24 Aligned_cols=21 Identities=5% Similarity=0.137 Sum_probs=15.6
Q ss_pred hccCcchHHHHHHHHHhCcccc
Q 038443 15 LMELKSCSNENVILFLNSQADI 36 (92)
Q Consensus 15 l~~v~gC~~EI~~~f~~G~~~i 36 (92)
..++.||.+||+.-.+ .+++|
T Consensus 14 ~vni~gC~~ai~~~~L-kK~~l 34 (95)
T d1k8rb_ 14 AVQSRGDYQKTLAIAL-KKFSL 34 (95)
T ss_dssp EEECCSCHHHHHHHHH-HHHTC
T ss_pred EEEeccCHHHHHHHHH-HhcCC
Confidence 6789999999876665 45543
No 4
>d1hssa_ a.52.1.2 (A:) 0.19 alpha-amylase inhibitor {Wheat (Triticum aestivum) [TaxId: 4565]}
Probab=7.11 E-value=85 Score=19.65 Aligned_cols=36 Identities=19% Similarity=0.352 Sum_probs=24.8
Q ss_pred cCcchHHHHHHHHHhCcc--c-cChhchHHHHHhhhCccc
Q 038443 17 ELKSCSNENVILFLNSQA--D-IGPDYCRAIDIITRNCWP 53 (92)
Q Consensus 17 ~v~gC~~EI~~~f~~G~~--~-igp~CC~Ai~~i~~~CWP 53 (92)
-+++|-..+.+- -.|.. . +-..||+-+..|.+.|+=
T Consensus 12 pL~~CR~yv~~q-~~G~~~~~~~k~~CC~eLa~i~~~CRC 50 (120)
T d1hssa_ 12 ALPACRPLLRLQ-CNGSQVPEAVLRDCCQQLAHISEWCRC 50 (120)
T ss_dssp CCTTHHHHHHHH-TTTCCCCHHHHHHHHHHHHTSCTTTHH
T ss_pred ccHHHHHHHHHH-hcCCCCcchHHHHHHHHHHhcCcccch
Confidence 467888655333 44433 1 668899999999999964
No 5
>d1kyqa2 e.37.1.1 (A:151-273) Bifunctional dehydrogenase/ferrochelatase Met8p, dimerisation and C-terminal domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=7.10 E-value=78 Score=19.52 Aligned_cols=17 Identities=12% Similarity=0.073 Sum_probs=13.7
Q ss_pred CCCCCcchhhHHhhhcc
Q 038443 58 SLEFTAKEGNILRGYYD 74 (92)
Q Consensus 58 ~~pf~~~e~~~Lkg~C~ 74 (92)
..|-+|+..+++++||+
T Consensus 107 ~~~~~pp~~~~~~~~~~ 123 (123)
T d1kyqa2 107 CSLQFPPRERLLSEYCS 123 (123)
T ss_dssp SCCCCCCHHHHHHHSBC
T ss_pred cCCCCCChhHHHHHhhC
Confidence 34667889999999985
No 6
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.79 E-value=89 Score=16.02 Aligned_cols=18 Identities=17% Similarity=0.076 Sum_probs=14.2
Q ss_pred CCCCCcchhhHHhhhccc
Q 038443 58 SLEFTAKEGNILRGYYDA 75 (92)
Q Consensus 58 ~~pf~~~e~~~Lkg~C~~ 75 (92)
.-|++++|-.+|+..-..
T Consensus 3 rg~WT~eED~~L~~~v~~ 20 (52)
T d1gvda_ 3 KGPWTKEEDQRLIKLVQK 20 (52)
T ss_dssp CCSCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 358999999999886554
No 7
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.56 E-value=93 Score=15.68 Aligned_cols=17 Identities=18% Similarity=0.192 Sum_probs=13.2
Q ss_pred CCCCcchhhHHhhhccc
Q 038443 59 LEFTAKEGNILRGYYDA 75 (92)
Q Consensus 59 ~pf~~~e~~~Lkg~C~~ 75 (92)
.||+++|-.+|...-..
T Consensus 2 ~~WT~eED~~L~~~v~~ 18 (47)
T d1gv2a2 2 TSWTEEEDRIIYQAHKR 18 (47)
T ss_dssp CCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 47899999988876554
No 8
>d1bdsa_ g.9.1.1 (A:) BDs-I defensin {Sea anemone (Anemonia sulcata) [TaxId: 6108]}
Probab=5.55 E-value=54 Score=17.06 Aligned_cols=8 Identities=63% Similarity=1.730 Sum_probs=4.9
Q ss_pred hhCc--cccc
Q 038443 48 TRNC--WPAM 55 (92)
Q Consensus 48 ~~~C--WP~m 55 (92)
+.|| ||++
T Consensus 29 tsncykwpni 38 (43)
T d1bdsa_ 29 TSNCYKWPNI 38 (43)
T ss_dssp CCEEEETTEE
T ss_pred ccccccCCcc
Confidence 4566 7765
No 9
>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.27 E-value=66 Score=15.65 Aligned_cols=9 Identities=11% Similarity=0.493 Sum_probs=6.6
Q ss_pred HHhhhcccC
Q 038443 68 ILRGYYDAS 76 (92)
Q Consensus 68 ~Lkg~C~~~ 76 (92)
-+.|||++.
T Consensus 12 YvqGyCtrg 20 (29)
T d2cqea2 12 YITGFCARA 20 (29)
T ss_dssp TTTTCCSCS
T ss_pred heeeeecCC
Confidence 467889875
No 10
>d1dsqa_ g.40.1.1 (A:) Nucleic acid binding protein p14 {Mouse mammary tumor virus [TaxId: 11757]}
Probab=4.68 E-value=97 Score=14.50 Aligned_cols=11 Identities=18% Similarity=0.151 Sum_probs=6.4
Q ss_pred HhCccc-cChhc
Q 038443 30 LNSQAD-IGPDY 40 (92)
Q Consensus 30 ~~G~~~-igp~C 40 (92)
.-|+++ |..+|
T Consensus 7 scgktghikkdc 18 (26)
T d1dsqa_ 7 SCGKTGHIKRDC 18 (26)
T ss_dssp TTCCBSSCTTTT
T ss_pred ecCCcccchhhh
Confidence 346665 66665
Done!