BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038444
(300 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O60921|HUS1_HUMAN Checkpoint protein HUS1 OS=Homo sapiens GN=HUS1 PE=1 SV=1
Length = 280
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 71/302 (23%), Positives = 133/302 (44%), Gaps = 28/302 (9%)
Query: 1 MKFKAFLTDNGVNLLEKRFLPALDKMGKVCHLFLTREKAYF-LHNLLSGEGIQCVAQFHK 59
MKF+A + D R + K+ K C L ++ +K F L + L+ G+ + +
Sbjct: 1 MKFRAKIVDGACLNHFTRISNMIAKLAKTCTLRISPDKLNFILCDKLANGGVSMWCELEQ 60
Query: 60 ETLFDDYR---ISSQNEDCIAFAIDISLLQRAVRSGVSICSEIGAAGSAANRLQIKLVKK 116
E F++++ +S++N + I + L RA+++ A L+IKL K
Sbjct: 61 ENFFNEFQMEGVSAENNE-IYLELTSENLSRALKTA-----------QNARALKIKLTNK 108
Query: 117 LPPNCTQAMPFLTFETKGYKSAVIQDVPISKPLSRAQGLELQTALDMAQDIPPTLVQVPD 176
P T ++ L+ + V D+PI K + R +LQ + D+ + +P
Sbjct: 109 HFPCLTVSVELLSMSSSS--RIVTHDIPI-KVIPRKLWKDLQEPVVPDPDVS---IYLPV 162
Query: 177 LNQLQNFVHRMKHVGDLLNVSIYKYGDLHLQISTTLITLGAEFRKLLVIGEKAVAPSEDR 236
L +++ V +MK++ + L + G+L+L+I T L+ + F+ L + + EDR
Sbjct: 163 LKTMKSVVEKMKNISNHLVIEANLDGELNLKIETELVCVTTHFKDLGNPPLASESTHEDR 222
Query: 237 NLSAQTRSERAISRGDAQSVQVSVKHFSKSLQCHLAKPDCAFFGIAPQGACLTVIFQFFI 296
N+ I R Q + + +K+L C++ F + + L Q+FI
Sbjct: 223 NVEHMAEVHIDI-RKLLQFLAGQQVNPTKAL-CNIVNNKMVHFDLLHEDVSL----QYFI 276
Query: 297 PG 298
P
Sbjct: 277 PA 278
>sp|Q54NC0|HUS1_DICDI Checkpoint protein hus1 homolog OS=Dictyostelium discoideum GN=hus1
PE=3 SV=1
Length = 271
Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 68/284 (23%), Positives = 121/284 (42%), Gaps = 56/284 (19%)
Query: 1 MKFKAFLTDNGVNLLEKRFLPALDKMGKVCHLFLTREKAYFLHNLLSGEGIQCVAQFHKE 60
MKFKA ++ + L + + + K+ C +T +K F+ +G+Q + +
Sbjct: 1 MKFKAKISKASILL---KTVQNIMKIYNECICHITPDKLRFIIQSDFNDGMQVFCEIQRS 57
Query: 61 TLFDDYRISSQNEDCIAFAIDISLLQRAVRSGVSICSEIGAAGSAANRLQIKLVKKLPPN 120
+F+++ I S +++ I F +D+ L+R ++S S G + N +++
Sbjct: 58 LIFENFTIESLSDNEIQFQLDLESLRRVLQSATSN----GVSDIFTNLTKVR-------- 105
Query: 121 CTQAMPFLTFETKGYKSAVI--QDVPISKPLSRAQGLELQTALDMAQDIPPTL------V 172
P L F K S + QD+PI L TA MAQ PTL +
Sbjct: 106 ---GGPVLHFIIKSGTSGTVIFQDIPIV----------LLTAQQMAQINEPTLPDPLVHI 152
Query: 173 QVPDLNQLQNFVHRMKHVGDLLNVSIYKYGDLHLQISTTLITLGAEFRKL--LVIGEKAV 230
+P+L LQ + +MK++ D L + I L ++ T+ ++ + L G+ +
Sbjct: 153 LLPNLKNLQKVIDKMKNISDCLKIMIAMNNRLSFEVETSSGSISTFYSGLDHPQFGDHVL 212
Query: 231 APSEDRNLSAQTRSERAISRGDAQSVQVSVKHFSKSLQCHLAKP 274
+P +L A +V V +K F+K L H KP
Sbjct: 213 SP----DLQA--------------TVCVDIKKFAKVLHIHQLKP 238
>sp|Q8K572|HUS1B_MOUSE Checkpoint protein HUS1B OS=Mus musculus GN=Hus1b PE=2 SV=1
Length = 276
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 76/310 (24%), Positives = 130/310 (41%), Gaps = 45/310 (14%)
Query: 1 MKFKAFLTDNGVNLLEKRFLPALDKMGKVCHLFLTREKAYFLHNLLSGEGIQCVAQFHKE 60
M+F+A +T L + + K+ KVC L + ++ YF L GE Q + ++
Sbjct: 1 MRFRARITSKRFIELFIQVSSTVAKLAKVCVLRVCPDRLYFCPMGLLGEA-QLWGEMRRD 59
Query: 61 TLFDDYRI--SSQNEDCIAFAIDISLLQRAVRSGVSICSEIGAAGSAANRLQIKLVKKLP 118
+F + + +SQ + I + L RAV++ AG+A++ L+++L K
Sbjct: 60 -VFHHFCMEGASQEFNEICLELMSEHLARAVKN----------AGNASS-LKLQLTNKQR 107
Query: 119 PNCTQAMPFLTFETKGYKSAVIQDVPISKPLSRAQGLELQTALDMAQDIPPTLVQVPDLN 178
P T + + G+ AV+ D+P+ + L R + + D+ V +P L
Sbjct: 108 PCLTLVVELAS--CPGHTRAVVHDLPV-RVLPRRRWKDCTEPHVRGSDVS---VYLPALK 161
Query: 179 QLQNFVHRMKHVGDLLNVSIYKYGDLHLQISTTLITLGAEFRKLLVIGEKAVAPSEDRNL 238
L+N V RM +VG + V G ++L + T +T+ + F+ L + S+ R+
Sbjct: 162 TLKNMVERMANVGSHVLVEANLNGRMNLTVETDRVTIKSYFKNLGNPPNAVLCMSQGRDP 221
Query: 239 SAQTRSERAISRGDAQSVQVSVKHFSKSLQC---HLAKPDCAFFGIAPQGACLTVI---- 291
VQV V + K LQC H P A I V+
Sbjct: 222 ETM--------------VQVRVDN-RKLLQCFDGHQINPTMALCNILSNTLLHLVLVHED 266
Query: 292 --FQFFIPGT 299
Q+FIP +
Sbjct: 267 ISLQYFIPAS 276
>sp|P78955|HUS1_SCHPO Checkpoint protein hus1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=hus1 PE=1 SV=1
Length = 287
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/255 (23%), Positives = 110/255 (43%), Gaps = 39/255 (15%)
Query: 1 MKFKAFLTDNGVNLLE-KRFLPALDKMGKVCHLFLTREKAYFLHNLLSGEGIQCVAQFHK 59
M+FK ++ NL R + ALDK+G+ C L L E F+ + Q +
Sbjct: 1 MRFKTRIS----NLYTLTRLVQALDKIGRFCWLRLMPETVNFVI-VPDFRMTQVWSVLEV 55
Query: 60 ETLFDDYRISSQNEDCIAFAIDISLLQRAVRSGVSICSEIGAAGSAANRLQIKLVKKLPP 119
ET+F+DY + S ++ I + I +A+RS + A+ ++L KK
Sbjct: 56 ETIFEDYVVQSNADNVINLEVPIDNFYKALRSAAN-----------ASDSTVRLSKK--- 101
Query: 120 NCTQAMPFLTFETKGYKSA-----VIQDVPISKPLSRA--QGLELQTALDMAQDIPPTLV 172
P L+ T A V ++P+ + LS++ ++ TA + P +
Sbjct: 102 ---NNQPLLSLSTTWSGRAFGSNIVTHNIPV-RVLSQSYVSVIKEPTAPE-----PDCHI 152
Query: 173 QVPDLNQLQNFVHRMKHVGDLLNVSIYKYGDLHLQISTTLITLGAEFRKLLVIGEKAVAP 232
+P LN L++ V + K + D + +S G+L L ++ + +++ L + P
Sbjct: 153 FLPQLNFLRHVVDKYKSLSDRIIMSANMSGELQLSVNIPSARVSTKWKGL---ENPELDP 209
Query: 233 SEDRNLSAQTRSERA 247
S+ ++S RA
Sbjct: 210 SQVEDISRHPSQTRA 224
>sp|C0QHM0|RIMP_DESAH Ribosome maturation factor RimP OS=Desulfobacterium autotrophicum
(strain ATCC 43914 / DSM 3382 / HRM2) GN=rimP PE=3 SV=1
Length = 155
Score = 33.9 bits (76), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 145 ISKPLSRAQGLEL---QTALDMAQDIPPTLVQVPDLNQLQNFVHRMKHVGDLLNVSIYKY 201
I++PL A+G EL + D I + P L + VH +H+GD+++V + +
Sbjct: 18 IAEPLCIAEGFELVHVECVSDQGGMIVRIYLDKPGGITLDDCVHMTRHLGDIIDVELEEI 77
Query: 202 GDLHLQIST 210
L+IS+
Sbjct: 78 SAYRLEISS 86
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.137 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,056,441
Number of Sequences: 539616
Number of extensions: 3652335
Number of successful extensions: 8844
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 8834
Number of HSP's gapped (non-prelim): 8
length of query: 300
length of database: 191,569,459
effective HSP length: 117
effective length of query: 183
effective length of database: 128,434,387
effective search space: 23503492821
effective search space used: 23503492821
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (28.1 bits)