Query 038444
Match_columns 300
No_of_seqs 131 out of 222
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 19:19:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038444.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038444hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3a1j_B HHUS1, checkpoint prote 100.0 5.8E-59 2E-63 431.6 33.4 265 1-299 2-280 (281)
2 1plq_A Proliferating cell nucl 99.8 1.3E-17 4.6E-22 151.1 28.1 245 3-298 2-253 (258)
3 1u7b_A PCNA, cyclin, prolifera 99.8 4.6E-17 1.6E-21 147.7 28.9 243 3-298 2-254 (261)
4 2zvv_A PCNA 1, proliferating c 99.8 9.2E-17 3.2E-21 147.5 29.2 244 3-297 22-272 (276)
5 1iz5_A Proliferating cell nucl 99.8 4E-16 1.4E-20 140.6 29.1 238 1-298 1-246 (249)
6 3aiz_C DNA polymerase sliding 99.7 5.2E-15 1.8E-19 133.1 27.6 233 1-296 1-241 (246)
7 3lx2_A DNA polymerase sliding 99.7 1.5E-14 5E-19 131.8 27.7 236 1-296 1-244 (259)
8 3aiz_A DNA polymerase sliding 99.7 7.7E-15 2.6E-19 132.1 23.3 234 3-296 2-244 (248)
9 2ijx_A DNA polymerase sliding 99.6 2.2E-13 7.6E-18 122.2 26.3 233 3-296 1-240 (244)
10 1ud9_A DNA polymerase sliding 99.6 2.9E-13 9.8E-18 121.6 26.0 233 3-296 1-240 (245)
11 1rwz_A DNA polymerase sliding 99.6 1.2E-12 4E-17 117.7 29.0 231 4-298 2-241 (245)
12 3fds_C DNA polymerase sliding 99.6 5.2E-13 1.8E-17 121.2 24.2 233 3-296 2-245 (249)
13 3k4x_A PCNA, proliferating cel 99.5 8.3E-12 2.9E-16 130.0 29.3 243 3-296 8-256 (798)
14 3p91_A Proliferating cell nucl 99.5 1.6E-11 5.5E-16 112.1 27.5 239 3-296 7-253 (265)
15 3fds_D DNA polymerase sliding 99.5 1.6E-11 5.4E-16 110.7 26.8 233 3-296 2-241 (245)
16 3a1j_C Cell cycle checkpoint p 99.4 7.2E-11 2.5E-15 107.6 26.5 231 1-287 3-239 (263)
17 3k4x_A PCNA, proliferating cel 99.4 1.4E-10 4.9E-15 120.7 27.5 245 1-296 540-790 (798)
18 3ifv_A PCNA; processivity fact 99.3 1.4E-10 4.9E-15 104.6 21.7 229 3-296 2-240 (247)
19 3a1j_A Cell cycle checkpoint c 99.3 7.9E-11 2.7E-15 107.5 19.1 248 1-296 1-262 (266)
20 3g65_A Cell cycle checkpoint c 98.6 1.2E-06 3.9E-11 81.3 16.2 244 1-288 1-248 (296)
21 1dml_A DNA polymerase processi 91.4 2.6 8.8E-05 38.7 12.2 169 4-215 32-221 (319)
22 3a1j_C Cell cycle checkpoint p 90.7 1.7 5.7E-05 38.7 10.3 101 4-134 143-247 (263)
23 3fds_C DNA polymerase sliding 89.1 5.5 0.00019 35.1 12.3 85 15-117 142-227 (249)
24 3lx2_A DNA polymerase sliding 88.4 7.3 0.00025 34.3 12.7 93 16-133 141-235 (259)
25 1u7b_A PCNA, cyclin, prolifera 87.8 9.3 0.00032 33.3 13.0 83 16-116 144-232 (261)
26 3p91_A Proliferating cell nucl 87.4 11 0.00038 33.3 13.3 91 16-132 148-244 (265)
27 3fds_D DNA polymerase sliding 86.3 5.7 0.0002 34.6 10.7 83 16-117 140-223 (245)
28 1plq_A Proliferating cell nucl 85.2 17 0.00057 31.6 13.2 83 16-116 144-232 (258)
29 2zvv_A PCNA 1, proliferating c 83.4 22 0.00076 31.3 13.3 83 16-116 164-252 (276)
30 1iz5_A Proliferating cell nucl 82.8 22 0.00076 30.5 13.3 82 16-115 141-223 (249)
31 3ifv_A PCNA; processivity fact 82.5 15 0.00051 31.9 11.7 90 16-133 138-230 (247)
32 3aiz_A DNA polymerase sliding 81.3 16 0.00055 31.5 11.4 82 16-115 143-224 (248)
33 1ud9_A DNA polymerase sliding 73.7 36 0.0012 29.1 11.3 81 16-115 139-220 (245)
34 2ijx_A DNA polymerase sliding 72.7 38 0.0013 28.9 11.2 81 16-115 139-220 (244)
35 1rwz_A DNA polymerase sliding 71.7 47 0.0016 28.4 12.8 80 16-116 138-218 (245)
36 3aiz_C DNA polymerase sliding 71.6 43 0.0015 28.6 11.4 81 16-115 139-221 (246)
37 3a1j_A Cell cycle checkpoint c 55.5 63 0.0021 28.2 9.4 97 14-133 150-252 (266)
38 1vpk_A DNA polymerase III, bet 50.8 68 0.0023 29.6 9.2 140 18-201 212-354 (378)
39 3d1g_A DNA polymerase III subu 43.6 1.9E+02 0.0066 26.4 12.3 76 18-117 265-344 (366)
40 2avt_A DNA polymerase III beta 41.7 1.2E+02 0.0041 28.0 9.3 66 29-117 289-354 (378)
41 2avt_A DNA polymerase III beta 40.4 1E+02 0.0035 28.5 8.6 132 28-201 220-353 (378)
42 1vpk_A DNA polymerase III, bet 37.1 2.4E+02 0.0084 25.7 21.6 210 20-288 88-303 (378)
43 3g65_A Cell cycle checkpoint c 36.1 1.3E+02 0.0045 26.9 8.4 98 14-134 150-253 (296)
44 3d1g_A DNA polymerase III subu 35.9 1.3E+02 0.0044 27.6 8.5 140 18-201 198-343 (366)
45 3p16_A DNA polymerase III subu 31.7 1.6E+02 0.0056 27.5 8.6 71 28-129 301-371 (408)
46 3t0p_A DNA polymerase III, bet 31.3 3.1E+02 0.011 25.1 13.2 141 18-201 198-344 (371)
47 3t0p_A DNA polymerase III, bet 24.7 4E+02 0.014 24.3 11.2 69 29-129 282-350 (371)
No 1
>3a1j_B HHUS1, checkpoint protein HUS1; DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A {Homo sapiens} PDB: 3g65_C 3ggr_B
Probab=100.00 E-value=5.8e-59 Score=431.61 Aligned_cols=265 Identities=24% Similarity=0.381 Sum_probs=234.6
Q ss_pred CeeeEEecCchhhhHHHhHHHHHHhcCCEEEEEEecCeEEEEeee-cCCCceEEEEEEccCCCcCeeEeeecC--CCeEE
Q 038444 1 MKFKAFLTDNGVNLLEKRFLPALDKMGKVCHLFLTREKAYFLHNL-LSGEGIQCVAQFHKETLFDDYRISSQN--EDCIA 77 (300)
Q Consensus 1 MkFrA~i~d~~~~~l~~~iv~~i~kl~k~cvlrlt~~~l~~i~~~-~~~~g~qvw~~l~~~~lF~ey~ieS~~--~N~I~ 77 (300)
|||||++.+.++..+|+++++++++|+|.|+++|+|+.++|+..+ ..++|+|+||.+.++.+|++|+|+|.+ +|+|+
T Consensus 2 MkF~a~l~~~~~~~~lkki~~ai~~L~k~~~l~~t~~~l~~~~~d~~~~~~v~l~~~~~~~~~F~~Y~~~s~~~~~n~I~ 81 (281)
T 3a1j_B 2 MKFRAKIVDGACLNHFTRISNMIAKLAKTCTLRISPDKLNFILCDKLANGGVSMWCELEQENFFNEFQMEGVSAENNEIY 81 (281)
T ss_dssp CEEEEEECCHHHHHHHHHHHHHHHHHCSEEEEEECSSEEEEEECCCC--CCCEEEEEEEGGGTCSEEEEECSSSTTCCEE
T ss_pred ceEEEEecCcchHHHHHHHHHHHHHHhCEEEEEEcCCEEEEEECCCCCCCeEEEEEEeehhcCCCCeEEeeccCCCCEEE
Confidence 999999999876777899999999999999999999999999754 245899999999999999999999764 79999
Q ss_pred EEEehHHHHHHHhccccccccccccCCCCceEEEEEeecCCCCCCCCCceEEEEEE-----CceeEEEEEeecCcccChh
Q 038444 78 FAIDISLLQRAVRSGVSICSEIGAAGSAANRLQIKLVKKLPPNCTQAMPFLTFETK-----GYKSAVIQDVPISKPLSRA 152 (300)
Q Consensus 78 lev~~~~L~raLrsa~~~~~~~~~~~~~a~~v~ikL~kk~~~~~~~~~P~L~~~~~-----g~~~~v~hdvPV~~vl~~~ 152 (300)
||+++++|.||||+|.+ ++.++|||+|++ .|+|+|+++ +.++.++||+|| ++++.+
T Consensus 82 l~v~~~~L~k~Lk~a~n-----------~~~~~ikL~k~~-------~p~L~fe~~~~~~~~~~~~v~~dipv-kll~~~ 142 (281)
T 3a1j_B 82 LELTSENLSRALKTAQN-----------ARALKIKLTNKH-------FPCLTVSVELLSMSSSSRIVTHDIPI-KVIPRK 142 (281)
T ss_dssp EEEEHHHHHHHGGGGGG-----------EEEEEEEEECSS-------SCEEEEEEEECCSSSCCCEEEEEEEC-EECCGG
T ss_pred EEEeHHHHHHHHHhcCC-----------CCeEEEEeccCC-------CCEEEEEEEcccCCCCceEEEEEeee-EEcCHH
Confidence 99999999999999986 789999999996 799999998 667899999999 799999
Q ss_pred hhchhhhhhcccCCCCCeEEEcCChhhHHHHHHhhhccCCEEEEEEEcCCeEEEEEeecceEEeEEeccccccccccCCC
Q 038444 153 QGLELQTALDMAQDIPPTLVQVPDLNQLQNFVHRMKHVGDLLNVSIYKYGDLHLQISTTLITLGAEFRKLLVIGEKAVAP 232 (300)
Q Consensus 153 ~~~~l~eP~~~~~~~p~~~i~lP~l~~l~~ivdR~k~~~~~v~i~an~~G~L~l~v~t~~v~v~t~~~~L~~~~~~~~~~ 232 (300)
+|++|.+|.+ +.|+++|.||++++|++++||||++|+.|+|+||++|+|+|++++|.++++++|++|.++++.. +
T Consensus 143 ~~e~l~~P~~---~~~dv~i~lPsl~~~~~iv~~lk~i~d~v~i~a~~~G~l~f~~~~d~~~~~~~~~~l~~~~~~~--~ 217 (281)
T 3a1j_B 143 LWKDLQEPVV---PDPDVSIYLPVLKTMKSVVEKMKNISNHLVIEANLDGELNLKIETELVCVTTHFKDLGNPPLAS--E 217 (281)
T ss_dssp GGGGGSCCCC---CCCSEEEECCCHHHHHHHHHHHHTTCSEEEEEECTTSCEEEEEECSSEEEEEEECCCCCCCC-----
T ss_pred HHhhcCCCCC---CCCCeEEECCCHHHHHHHHHHHhccCCeEEEEEECCCeEEEEEEeeeEEEEEEEcCCCCCCCCc--c
Confidence 9999999965 5689999999999999999999999999999999999999999999999999999999765421 1
Q ss_pred CccccccccchhhhhcCCCCeEEEEEechhHHhhccccccCCcEEEEEEECCCeEE-E-----EEEEEEeccC
Q 038444 233 SEDRNLSAQTRSERAISRGDAQSVQVSVKHFSKSLQCHLAKPDCAFFGIAPQGACL-T-----VIFQFFIPGT 299 (300)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~V~Vd~k~l~~~L~~~~~~p~~v~~~i~~~~~~~-~-----~~l~y~ip~~ 299 (300)
.+ + +..+++++++|+|++|+|.+|++++++.|+.++|+|.++++++ + +.|+|||||+
T Consensus 218 ~~----~------~~~~~~~~~sv~~~~k~l~~f~k~~~ls~~v~~~~i~~~~~l~~y~~~~~g~l~yylp~~ 280 (281)
T 3a1j_B 218 ST----H------EDRNVEHMAEVHIDIRKLLQFLAGQQVNPTKALCNIVNNKMVHFDLLHEDVSLQYFIPAL 280 (281)
T ss_dssp -----------------CCCCEEEEEEHHHHHHHHHHCCSCCSEEEEEEETTTEEEEEEESSSCEEEEEEECC
T ss_pred cc----c------cccCCCccEEEEEEHHHHHHhhCcccCCCcEEEEEEeCCceEEEEEeCCcEEEEEEeeec
Confidence 11 0 1233447999999999999999999999999999999999874 2 4699999996
No 2
>1plq_A Proliferating cell nuclear antigen (PCNA); DNA-binding, nuclear protein, DNA replication, processivity; 2.30A {Saccharomyces cerevisiae} SCOP: d.131.1.2 d.131.1.2 PDB: 1plr_A 2od8_A* 1sxj_F* 3f1w_A 3v60_B 3v61_B 3v62_B* 3gpn_A 3gpm_A 3l0w_A 3l0x_A 3l10_A 3pge_B 3l0x_B
Probab=99.82 E-value=1.3e-17 Score=151.11 Aligned_cols=245 Identities=11% Similarity=0.174 Sum_probs=186.0
Q ss_pred eeEEecCchhhhHHHhHHHHHHhcCCEEEEEEecCeEEEEeeecCCCceEEEEEEccCCCcCeeEeeecCCCeEEEEEeh
Q 038444 3 FKAFLTDNGVNLLEKRFLPALDKMGKVCHLFLTREKAYFLHNLLSGEGIQCVAQFHKETLFDDYRISSQNEDCIAFAIDI 82 (300)
Q Consensus 3 FrA~i~d~~~~~l~~~iv~~i~kl~k~cvlrlt~~~l~~i~~~~~~~g~qvw~~l~~~~lF~ey~ieS~~~N~I~lev~~ 82 (300)
|||++.+. ..|++++.++.++.+.|.+.++++.|.++.+. ...-.++-..++.+ .|++|+|+. .|.+.++.
T Consensus 2 f~a~~~~~---~~~~~i~~~i~~i~~~v~~~~~~~gl~~~a~D-~~rla~~~~~l~~~-~F~~y~~~~----~~~~~i~l 72 (258)
T 1plq_A 2 LEAKFEEA---SLFKRIIDGFKDCVQLVNFQCKEDGIIAQAVD-DSRVLLVSLEIGVE-AFQEYRCDH----PVTLGMDL 72 (258)
T ss_dssp EEEEESSH---HHHHHHHHHHTTTCSEEEEEEETTEEEEEEEC-TTSSEEEEEEEEGG-GSSEECCSS----CEEEEEEH
T ss_pred eEEEecch---HHHHHHHHHHHHHhceEEEEEcCCceEEEEEC-CCcEEEEEEEECHH-hCcEEEeCC----CeEEEEEH
Confidence 99999977 34699999999999999999999999998643 22344555556655 999999976 67899999
Q ss_pred HHHHHHHhccccccccccccCCCCceEEEEEeecCCCCCCCCCceEEEEEECceeEEEEEeecCcccChhhhchhhhhhc
Q 038444 83 SLLQRAVRSGVSICSEIGAAGSAANRLQIKLVKKLPPNCTQAMPFLTFETKGYKSAVIQDVPISKPLSRAQGLELQTALD 162 (300)
Q Consensus 83 ~~L~raLrsa~~~~~~~~~~~~~a~~v~ikL~kk~~~~~~~~~P~L~~~~~g~~~~v~hdvPV~~vl~~~~~~~l~eP~~ 162 (300)
..|.++||.+.+ .+.++|++.+.+ +.|.|.+.+.+...+..+-+ |++-... ++|..|.
T Consensus 73 ~~l~kil~~~~~-----------~d~v~i~~~~~~--------~~l~~~~~~~~~~~~~~~~~-rlie~~~-~~~~ip~- 130 (258)
T 1plq_A 73 TSLSKILRCGNN-----------TDTLTLIADNTP--------DSIILLFEDTKKDRIAEYSL-KLMDIDA-DFLKIEE- 130 (258)
T ss_dssp HHHHHHTTCSTT-----------TSEEEEEECSSC--------SEEEEEEECSSSSCEEEEEE-ECBCCCC-CCCCCCC-
T ss_pred HHHHHHHhcCCC-----------CCEEEEEecCCC--------CeEEEEEEcCCCCeEEEEEE-EcccCCc-ccCCCCC-
Confidence 999999999864 577999997653 68888887654333334444 3454443 5566662
Q ss_pred ccCCCCCeEEEcCChhhHHHHHHhhhccCCEEEEEEEcCCeEEEEEeecceEEeEEeccccccccccCCCCccccccccc
Q 038444 163 MAQDIPPTLVQVPDLNQLQNFVHRMKHVGDLLNVSIYKYGDLHLQISTTLITLGAEFRKLLVIGEKAVAPSEDRNLSAQT 242 (300)
Q Consensus 163 ~~~~~p~~~i~lP~l~~l~~ivdR~k~~~~~v~i~an~~G~L~l~v~t~~v~v~t~~~~L~~~~~~~~~~~~~~~~~~~~ 242 (300)
...+..+.||+ +.|+.+++|+..+|+.|+|+++ +|.++|+.++|..+..++|..+.++. ..+..
T Consensus 131 ---~~~~~~i~~~~-~~l~~av~r~~~~s~~v~i~~~-~~~l~ls~~~d~g~~~~~l~~~~~~~------~~~~~----- 194 (258)
T 1plq_A 131 ---LQYDSTLSLPS-SEFSKIVRDLSQLSDSINIMIT-KETIKFVADGDIGSGSVIIKPFVDME------HPETS----- 194 (258)
T ss_dssp ---SCCSEEEEEEH-HHHHHHHHHHHTTCSEEEEEEE-TTEEEEEEECSSCEEEEEECCBCCTT------CGGGC-----
T ss_pred ---CCccEEEEEeH-HHHHHHHHHHHhcCCEEEEEEE-CCEEEEEEEccCceEEEEEecCCCCC------CCccc-----
Confidence 14567888999 9999999999999999999997 57899999999999999998766422 11100
Q ss_pred hhhhhcCCCCeEEEEEechhHHhhccccccCCcEEEEEEECCCeE-EE-----EEEEEEe-cc
Q 038444 243 RSERAISRGDAQSVQVSVKHFSKSLQCHLAKPDCAFFGIAPQGAC-LT-----VIFQFFI-PG 298 (300)
Q Consensus 243 ~~~~~~~~~~~~~V~Vd~k~l~~~L~~~~~~p~~v~~~i~~~~~~-~~-----~~l~y~i-p~ 298 (300)
...+.++.+++..+.|-|..+|++..+ .++|.+.+.+++.+ +. ..++||| |-
T Consensus 195 ---~~~~~ge~~~i~f~~~yL~~~lka~~~-s~~V~i~~~~~~Pl~l~~~~~~~~~~y~l~P~ 253 (258)
T 1plq_A 195 ---IKLEMDQPVDLTFGAKYLLDIIKGSSL-SDRVGIRLSSEAPALFQFDLKSGFLQFFLAPK 253 (258)
T ss_dssp ---BEEEESSCEEEEEEHHHHHHHGGGGGT-CSEEEEEECSSSCEEEEEEETTEEEEEEECCC
T ss_pred ---eEEecCCcEEEEEEHHHHHHHhccccC-CceEEEEECCCCCEEEEEEECCeEEEEEECCc
Confidence 011123568999999999999997655 77999999988776 32 4688887 64
No 3
>1u7b_A PCNA, cyclin, proliferating cell nuclear antigen; sliding clamp, DNA processing, FEN1, PIP- BOX, replication; 1.88A {Homo sapiens} SCOP: d.131.1.2 d.131.1.2 PDB: 1u76_A 1axc_A 1ul1_A 1vyj_A 1vym_A 1w60_A 2zvk_A* 2zvl_A* 2zvm_A* 3p87_A 3vkx_A*
Probab=99.81 E-value=4.6e-17 Score=147.65 Aligned_cols=243 Identities=11% Similarity=0.181 Sum_probs=183.1
Q ss_pred eeEEecCchhhhHHHhHHHHHHhcCCEEEEEEecCeEEEEeeecCCCceEEEEEEccCCCcCeeEeeecCCCeEEEEEeh
Q 038444 3 FKAFLTDNGVNLLEKRFLPALDKMGKVCHLFLTREKAYFLHNLLSGEGIQCVAQFHKETLFDDYRISSQNEDCIAFAIDI 82 (300)
Q Consensus 3 FrA~i~d~~~~~l~~~iv~~i~kl~k~cvlrlt~~~l~~i~~~~~~~g~qvw~~l~~~~lF~ey~ieS~~~N~I~lev~~ 82 (300)
|||++.+.. . |++++.++.++-+.|.+.++++.|.++.+.. ..-.++-..++.+ .|++|+|+. +|.+.++.
T Consensus 2 f~a~~~~~~--~-~k~i~~~i~~il~~v~~~~~~~gl~~~a~D~-~rla~~~~~l~~~-~f~~y~~~~----~i~~~i~l 72 (261)
T 1u7b_A 2 FEARLVQGS--I-LKKVLEALKDLINEACWDISSSGVNLQSMDS-SHVSLVQLTLRSE-GFDTYRCDR----NLAMGVNL 72 (261)
T ss_dssp EEEEESCTH--H-HHHHHHHHHTTCSEEEEEEETTEEEEEEECT-TSSEEEEEEEEGG-GSSEEEESS----CEEEEEEH
T ss_pred eEEEecchH--H-HHHHHHHHHHHhcEEEEEEeCCceEEEEECC-CCEEEEEEEECHH-hCeEEEeCC----CeEEEEEH
Confidence 999999873 4 6999999999999999999999999976432 2344544555554 899999975 68899999
Q ss_pred HHHHHHHhccccccccccccCCCCceEEEEEeecCCCCCCCCCceEEEEEECce--eEEEEEeecCcccChhhhchhhhh
Q 038444 83 SLLQRAVRSGVSICSEIGAAGSAANRLQIKLVKKLPPNCTQAMPFLTFETKGYK--SAVIQDVPISKPLSRAQGLELQTA 160 (300)
Q Consensus 83 ~~L~raLrsa~~~~~~~~~~~~~a~~v~ikL~kk~~~~~~~~~P~L~~~~~g~~--~~v~hdvPV~~vl~~~~~~~l~eP 160 (300)
..|.++||.+.+ .+.++|++...+ +.|.|.+.+.+ +..++.+++ +.... +++..|
T Consensus 73 ~~l~kil~~~~~-----------~d~v~i~~~~~~--------~~l~~~~~~~~~~~~~~~~~rl---ie~~~-~~~~iP 129 (261)
T 1u7b_A 73 TSMSKILKCAGN-----------EDIITLRAEDNA--------DTLALVFEAPNQEKVSDYEMKL---MDLDV-EQLGIP 129 (261)
T ss_dssp HHHHHHHTTSCT-----------TCEEEEEECTTC--------SEEEEEEECTTSSCEEEEEEEC---CCCCC-CCCBCC
T ss_pred HHHHHHHhcCCC-----------CCEEEEEecCCC--------CEEEEEEEcCCCCeEEEEEEEC---ccCCc-ccCCCC
Confidence 999999999864 577999996533 68888888654 344555554 44433 455555
Q ss_pred hcccCCCCCeEEEcCChhhHHHHHHhhhccCCEEEEEEEcCCeEEEEEeecceEEeEEeccccccccccCCCCccccccc
Q 038444 161 LDMAQDIPPTLVQVPDLNQLQNFVHRMKHVGDLLNVSIYKYGDLHLQISTTLITLGAEFRKLLVIGEKAVAPSEDRNLSA 240 (300)
Q Consensus 161 ~~~~~~~p~~~i~lP~l~~l~~ivdR~k~~~~~v~i~an~~G~L~l~v~t~~v~v~t~~~~L~~~~~~~~~~~~~~~~~~ 240 (300)
. ...+..+.||+ +.|+.+++|+..+|+.|+|+++. |.++|+.++|..+..++|....++.. .++.
T Consensus 130 ~----~~~~~~i~~~~-~~l~~ai~r~~~~s~~v~i~~~~-~~l~ls~~~d~g~~~~~~~~~~~~~~------~~~~--- 194 (261)
T 1u7b_A 130 E----QEYSCVVKMPS-GEFARICRDLSHIGDAVVISCAK-DGVKFSASGELGNGNIKLSQTSNVDK------EEEA--- 194 (261)
T ss_dssp C----CCCSEEEEEEH-HHHHHHHHHHHTTCSEEEEEEET-TEEEEEEEETTEEEEEEECCCC----------CCSC---
T ss_pred C----CcccEEEEEEH-HHHHHHHHHHHhcCCEEEEEEEC-CEEEEEEEecCceEEEEEecCCCCCC------Cccc---
Confidence 2 14567888998 89999999999999999999975 78999999999999999987653320 1000
Q ss_pred cchhhhhcCCCCeEEEEEechhHHhhccccccCCcEEEEEEECCCeE-EE------EEEEEEe-cc
Q 038444 241 QTRSERAISRGDAQSVQVSVKHFSKSLQCHLAKPDCAFFGIAPQGAC-LT------VIFQFFI-PG 298 (300)
Q Consensus 241 ~~~~~~~~~~~~~~~V~Vd~k~l~~~L~~~~~~p~~v~~~i~~~~~~-~~------~~l~y~i-p~ 298 (300)
...+.++.+++..+.|.|..+|++..+ +++|.+.+.++..+ +. ..++||| |-
T Consensus 195 -----~~~~~~e~~~i~f~~~yL~~~lka~~~-s~~V~i~~~~~~P~~l~~~~~~~~~~~y~l~P~ 254 (261)
T 1u7b_A 195 -----VTIEMNEPVQLTFALRYLNFFTKATPL-SSTVTLSMSADVPLVVEYKIADMGHLKYYLAPK 254 (261)
T ss_dssp -----CEEEESSCEEEEEEHHHHHHHGGGGGG-CSEEEEEECTTSCEEEEEEETTTEEEEEEECCB
T ss_pred -----eEEecCCcEEEEEeHHHHHHHhCcccC-CCeEEEEECCCCCEEEEEEeCCCcEEEEEECCc
Confidence 011123568999999999999997655 78999999988766 32 3678887 53
No 4
>2zvv_A PCNA 1, proliferating cellular nuclear antigen 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 2zvw_A
Probab=99.80 E-value=9.2e-17 Score=147.47 Aligned_cols=244 Identities=11% Similarity=0.164 Sum_probs=183.6
Q ss_pred eeEEecCchhhhHHHhHHHHHHhcCCEEEEEEecCeEEEEeeecCCCceEEEEEEccCCCcCeeEeeecCCCeEEEEEeh
Q 038444 3 FKAFLTDNGVNLLEKRFLPALDKMGKVCHLFLTREKAYFLHNLLSGEGIQCVAQFHKETLFDDYRISSQNEDCIAFAIDI 82 (300)
Q Consensus 3 FrA~i~d~~~~~l~~~iv~~i~kl~k~cvlrlt~~~l~~i~~~~~~~g~qvw~~l~~~~lF~ey~ieS~~~N~I~lev~~ 82 (300)
|||++.+.. . |++++.++.++-+.|.+.++++.|.++.+.. ..-.++-..++.+ .|++|+|+. +|.+.++.
T Consensus 22 f~a~~~~~~--~-lk~ii~~~~~il~~v~~~~~~~gl~~vAtD~-~rla~~~~~l~~~-~f~~y~~~~----~i~~~i~l 92 (276)
T 2zvv_A 22 LELRLVQGS--L-LKKVLESIKDLVNDANFDCSSTGFSLQAMDS-SHVALVSLLLRSE-GFEHYRCDR----NLSMGMNL 92 (276)
T ss_dssp EEEEESCTH--H-HHHHHHHHTTTCSEEEEEEETTEEEEEEECT-TSSEEEEEEEEGG-GSSEEEESS----CEEEEEEH
T ss_pred EEEEeCChH--H-HHHHHHHHHHHhceEEEEEECCeEEEEEECC-CCEEEEEEEEChh-hCcEEEcCC----CEEEEEEH
Confidence 999999873 4 5899999999999999999999999986432 2333444445544 899999976 68899999
Q ss_pred HHHHHHHhccccccccccccCCCCceEEEEEeecCCCCCCCCCceEEEEEECceeEEEEEeecCcccChhhhchhhhhhc
Q 038444 83 SLLQRAVRSGVSICSEIGAAGSAANRLQIKLVKKLPPNCTQAMPFLTFETKGYKSAVIQDVPISKPLSRAQGLELQTALD 162 (300)
Q Consensus 83 ~~L~raLrsa~~~~~~~~~~~~~a~~v~ikL~kk~~~~~~~~~P~L~~~~~g~~~~v~hdvPV~~vl~~~~~~~l~eP~~ 162 (300)
..|.++||.+.+ .+.++|++...+ ..|.|.+.+.+...+..+-+ |++.... ++|..|.
T Consensus 93 ~~l~kilk~~~~-----------~d~v~i~~~~~~--------~~l~~~~~~~~~~~~~~~~~-rLid~~~-p~~~iP~- 150 (276)
T 2zvv_A 93 GNMSKMLKCAGN-----------DDIITIKADDGG--------DTVTFMFESPTQDKIADFEM-KLMDIDS-EHLGIPD- 150 (276)
T ss_dssp HHHHHHHHTSCT-----------TCEEEEEECTTC--------SEEEEEEECTTSSCEEEEEE-ECCCEEC-CCCCCCC-
T ss_pred HHHHHHHhhCCC-----------CCeEEEEEcCCC--------CeEEEEEEeCCCceEEEEEE-EcccCCc-ccCCCCC-
Confidence 999999999864 577999997543 68888887654443444444 3455444 5566662
Q ss_pred ccCCCCCeEEEcCChhhHHHHHHhhhccCCEEEEEEEcCCeEEEEEeecceEEeEEeccccccccccCCCCccccccccc
Q 038444 163 MAQDIPPTLVQVPDLNQLQNFVHRMKHVGDLLNVSIYKYGDLHLQISTTLITLGAEFRKLLVIGEKAVAPSEDRNLSAQT 242 (300)
Q Consensus 163 ~~~~~p~~~i~lP~l~~l~~ivdR~k~~~~~v~i~an~~G~L~l~v~t~~v~v~t~~~~L~~~~~~~~~~~~~~~~~~~~ 242 (300)
...+..+.||+ +.|+.+++|+..+|+.|+|+++ +|.++|+.++|..+..++|....++. .+++.
T Consensus 151 ---~~~~~~i~~~~-~~l~~av~r~~~~sd~V~i~~~-~~~l~lsa~gd~g~~~~~l~~~~~~~------~~~~~----- 214 (276)
T 2zvv_A 151 ---AEYHSIVRMPS-NEFSRICKDLSSIGDTVVISVT-KEGVKFSTAGDIGTANIVLRQNTTVD------KPEDA----- 214 (276)
T ss_dssp ---CCCSEEEEEEH-HHHHHHHHHHHTTCSEEEEEEE-TTEEEEEEEETTEEEEEEECCCSSCC------SGGGC-----
T ss_pred ---CcccEEEEEEH-HHHHHHHHHHHhhCCEEEEEEe-CCEEEEEEEeeccEEEEEEccCCCCC------Ccccc-----
Confidence 14567888998 9999999999999999999997 56899999999999999998765321 11000
Q ss_pred hhhhhcCCCCeEEEEEechhHHhhccccccCCcEEEEEEECCCeE-EE------EEEEEEec
Q 038444 243 RSERAISRGDAQSVQVSVKHFSKSLQCHLAKPDCAFFGIAPQGAC-LT------VIFQFFIP 297 (300)
Q Consensus 243 ~~~~~~~~~~~~~V~Vd~k~l~~~L~~~~~~p~~v~~~i~~~~~~-~~------~~l~y~ip 297 (300)
...+.++.+++..+.|-|..+|++..+ .++|.+.+.++..+ +. ..++|||.
T Consensus 215 ---~~~~~ge~~~i~fn~~YL~d~lka~~l-s~~V~i~l~~~~Pl~l~~~~~~~g~~~y~la 272 (276)
T 2zvv_A 215 ---IVIEMKEPVSLSFALRYMNSFTKATPL-SDTVTISLSSELPVVVEYKVAEMGYIRYYLA 272 (276)
T ss_dssp ---CEEEESSCEEEEEEHHHHHHHGGGGGG-CSEEEEEECTTSCEEEEEEETTTEEEEEEEC
T ss_pred ---EEEecCCcEEEEEEHHHHHHHhccccC-CCEEEEEEcCCceEEEEEEeCCCcEEEEEEc
Confidence 011123568999999999999997655 77999999988766 32 35777763
No 5
>1iz5_A Proliferating cell nuclear antigen; DNA, replication, processivity, sliding clamp, DNA binding protein; 1.80A {Pyrococcus furiosus} SCOP: d.131.1.2 d.131.1.2 PDB: 3a2f_B* 1iz4_A 1ge8_A 1isq_A 3lx1_A*
Probab=99.78 E-value=4e-16 Score=140.65 Aligned_cols=238 Identities=11% Similarity=0.107 Sum_probs=181.6
Q ss_pred CeeeEEecCchhhhHHHhHHHHHHhcCCEEEEEEecCeEEEEeeecCCCceEEEEEEccCCCcCeeEeeecCCCeEEEEE
Q 038444 1 MKFKAFLTDNGVNLLEKRFLPALDKMGKVCHLFLTREKAYFLHNLLSGEGIQCVAQFHKETLFDDYRISSQNEDCIAFAI 80 (300)
Q Consensus 1 MkFrA~i~d~~~~~l~~~iv~~i~kl~k~cvlrlt~~~l~~i~~~~~~~g~qvw~~l~~~~lF~ey~ieS~~~N~I~lev 80 (300)
|||||++.+.. . |++++.++.++-+.|.+.++++.++++.+.. ..-.+++..++.+ .|++|+++. .|.+.+
T Consensus 1 M~f~a~~~~~~--~-~~~i~~~i~~~l~gv~~~~~~~~l~~vatD~-~rla~~~~~l~~~-~f~~y~~~~----~~~~~~ 71 (249)
T 1iz5_A 1 MPFEIVFEGAK--E-FAQLIDTASKLIDEAAFKVTEDGISMRAMDP-SRVVLIDLNLPSS-IFSKYEVVE----PETIGV 71 (249)
T ss_dssp -CEEEEEECHH--H-HHHHHHHHTSSCSEEEEEECSSEEEEEEECT-TSSEEEEEEEEGG-GSSEEEESS----CEEEEE
T ss_pred CcEEEEeCchH--H-HHHHHHHHHHHhcEEEEEEeCCeEEEEEECC-CcEEEEEEEECHH-hCcEEEcCC----CeEEEE
Confidence 99999999773 4 6999999999999999999999999987543 3456777778755 899999977 678999
Q ss_pred ehHHHHHHHhccccccccccccCCCCceEEEEEeecCCCCCCCCCceEEEEEECceeEEEEEeecCcccChhhhchhhhh
Q 038444 81 DISLLQRAVRSGVSICSEIGAAGSAANRLQIKLVKKLPPNCTQAMPFLTFETKGYKSAVIQDVPISKPLSRAQGLELQTA 160 (300)
Q Consensus 81 ~~~~L~raLrsa~~~~~~~~~~~~~a~~v~ikL~kk~~~~~~~~~P~L~~~~~g~~~~v~hdvPV~~vl~~~~~~~l~eP 160 (300)
+...|.++|+.+.+ .+.++|++.++ . .|.|.+.+.. +.++.+ |++.... .+|..|
T Consensus 72 ~l~~l~kil~~~~~-----------~~~v~i~~~~~--------~-~l~f~~~~~~---~~~~~~-rlidg~~-p~~~iP 126 (249)
T 1iz5_A 72 NLDHLKKILKRGKA-----------KDTLILKKGEE--------N-FLEITIQGTA---TRTFRV-PLIDVEE-MEVDLP 126 (249)
T ss_dssp EHHHHHHHHTTCCT-----------TCEEEEEECSS--------S-EEEEEEESSS---EEEEEE-ECBCCCC------C
T ss_pred EHHHHHHHHHhCCC-----------CCEEEEEECCC--------C-eEEEEEecCC---EEEEEE-EcccCCc-cCCCCC
Confidence 99999999998764 46788888543 2 7888887643 467888 6777655 667766
Q ss_pred hcccCCCCCeEEEcCChhhHHHHHHhhhccCCEEEEEEEcCCeEEEEEeecceEEeEEeccccccccccCCCCccccccc
Q 038444 161 LDMAQDIPPTLVQVPDLNQLQNFVHRMKHVGDLLNVSIYKYGDLHLQISTTLITLGAEFRKLLVIGEKAVAPSEDRNLSA 240 (300)
Q Consensus 161 ~~~~~~~p~~~i~lP~l~~l~~ivdR~k~~~~~v~i~an~~G~L~l~v~t~~v~v~t~~~~L~~~~~~~~~~~~~~~~~~ 240 (300)
. ...+..+.||. +.|+..++|+..+++.|+|+++ +|.|+|+.++|..+..++|.... +...
T Consensus 127 ~----~~~~~~v~i~~-~~l~~a~~r~~~ls~~V~l~~~-~~~l~ls~~~d~g~~~~~l~~~~------~~~~------- 187 (249)
T 1iz5_A 127 E----LPFTAKVVVLG-EVLKAAVKAASLVSDSIKFIAR-ENEFIMKAEGETQEVEIKLTLED------EGLL------- 187 (249)
T ss_dssp C----CCCCEEEEEEH-HHHHHHHHHHTTTCSEEEEEEE-TTEEEEEEECSSCEEEEEEETTT------TSSS-------
T ss_pred C----CcceEEEEEEH-HHHHHHHHHHHhcCCEEEEEEE-CCEEEEEEEecCceEEEEEccCC------CccE-------
Confidence 2 14667888998 9999999999999999999996 67899999999899999887542 0000
Q ss_pred cchhhhhcCCCCeEEEEEechhHHhhccccccCCcEEEEEEECCCeE-EE------EEEEEEe-cc
Q 038444 241 QTRSERAISRGDAQSVQVSVKHFSKSLQCHLAKPDCAFFGIAPQGAC-LT------VIFQFFI-PG 298 (300)
Q Consensus 241 ~~~~~~~~~~~~~~~V~Vd~k~l~~~L~~~~~~p~~v~~~i~~~~~~-~~------~~l~y~i-p~ 298 (300)
.-+.|+..++..+.|-|..+|+...+ .++|.+.+.++..+ +. ..+.||| |-
T Consensus 188 ------~~~~ge~~~i~Fn~~yL~d~lk~~~~-s~~V~l~~~~~~p~~i~~~~~~~~~~~y~i~P~ 246 (249)
T 1iz5_A 188 ------DIEVQEETKSAYGVSYLSDMVKGLGK-ADEVTIKFGNEMPMQMEYYIRDEGRLTFLLAPR 246 (249)
T ss_dssp ------EEEESSCEEEEEEHHHHHHHHTTSCT-TCEEEEEECTTCCEEEEEEETTTEEEEEEECCC
T ss_pred ------EEEcCCceEEEEeHHHHHHHhhhccC-CCeEEEEEcCCCCEEEEEEeCCCcEEEEEEccc
Confidence 01112458999999999999986544 78999999988766 32 3577877 53
No 6
>3aiz_C DNA polymerase sliding clamp C; protein-protein complex, replication; HET: DNA; 2.80A {Sulfolobus tokodaii} PDB: 3aix_A*
Probab=99.72 E-value=5.2e-15 Score=133.10 Aligned_cols=233 Identities=11% Similarity=0.090 Sum_probs=181.0
Q ss_pred CeeeEEecCchhhhHHHhHHHHHHhcCCEEEEEEecCeEEEEeeecCCCceEEEEEEccCCCcCeeEeeecCCCeEEEEE
Q 038444 1 MKFKAFLTDNGVNLLEKRFLPALDKMGKVCHLFLTREKAYFLHNLLSGEGIQCVAQFHKETLFDDYRISSQNEDCIAFAI 80 (300)
Q Consensus 1 MkFrA~i~d~~~~~l~~~iv~~i~kl~k~cvlrlt~~~l~~i~~~~~~~g~qvw~~l~~~~lF~ey~ieS~~~N~I~lev 80 (300)
|||||+ +. ..|++++.++.++-+.|.+.++++.++++.+.. ..-.+++..++.+ .|++|+++. .|.+.+
T Consensus 1 M~fr~~--~~---~~lk~~i~~~~~~l~gv~~~~~~~~l~~vatD~-~rla~~~~~l~~~-~f~~y~~~~----~i~~~~ 69 (246)
T 3aiz_C 1 MRVKVI--DA---DAFSYIFRTLEEFIDEITLDFTSDGLKIRGIDP-SRVTFIDILIPAG-YFEEYNVEK----EEKVGV 69 (246)
T ss_dssp CEEEES--CH---HHHHHHHHHHTTTCSEEEEEECSSEEEEEEECT-TSCEEEEEEEEGG-GSSEEECSS----CEEEEE
T ss_pred CceEEe--cH---HHHHHHHHHHHHHhcEEEEEEcCCeEEEEEECC-CcEEEEEEEEChH-hCcEEEcCC----CeEEEE
Confidence 999999 43 446999999999999999999999999987543 2456777777755 899999976 688999
Q ss_pred ehHHHHHHHhccccccccccccCCCCceEEEEEeecCCCCCCCCCceEEEEEECceeEEEEEeecCcccChhhhchhhhh
Q 038444 81 DISLLQRAVRSGVSICSEIGAAGSAANRLQIKLVKKLPPNCTQAMPFLTFETKGYKSAVIQDVPISKPLSRAQGLELQTA 160 (300)
Q Consensus 81 ~~~~L~raLrsa~~~~~~~~~~~~~a~~v~ikL~kk~~~~~~~~~P~L~~~~~g~~~~v~hdvPV~~vl~~~~~~~l~eP 160 (300)
+...|.++|+.+.+ .+.++|++ .. ...+.|.+.+.. +.++.+ |++..+. .+|..|
T Consensus 70 ~l~~l~kiL~~~~~-----------~~~v~i~~--~~-------~~~l~~~~~~~~---~~~~~~-rlidg~~-p~~~iP 124 (246)
T 3aiz_C 70 KLEDFTDVLKTVTK-----------NDSLYLET--DE-------NQNIKVTLDGVY---ERTFTF-PSIVASE-IETPNL 124 (246)
T ss_dssp EHHHHHHHHTTCCT-----------TCEEEEEE--CS-------SSCEEEEEESSS---EEEEEE-CCCCCCC-CCCSCS
T ss_pred EHHHHHHHHhhCCC-----------CCEEEEEE--CC-------CCeEEEEEecCc---EEEEEE-EcccCCc-ccCCCC
Confidence 99999999998764 46799998 22 247888887643 467888 6787655 667766
Q ss_pred hcccCCCCCeEEEcCChhhHHHHHHhhhcc-CCEEEEEEEcCCeEEEEEeecceEEeEEeccccccccccCCCCcccccc
Q 038444 161 LDMAQDIPPTLVQVPDLNQLQNFVHRMKHV-GDLLNVSIYKYGDLHLQISTTLITLGAEFRKLLVIGEKAVAPSEDRNLS 239 (300)
Q Consensus 161 ~~~~~~~p~~~i~lP~l~~l~~ivdR~k~~-~~~v~i~an~~G~L~l~v~t~~v~v~t~~~~L~~~~~~~~~~~~~~~~~ 239 (300)
. ...+..+.||. +.|+..++|+..+ ++.|+|+++ +|.|+|+.++|..+...+|.... +...+
T Consensus 125 ~----~~~~~~i~i~~-~~l~~a~~r~~~l~s~~V~l~~~-~~~l~ls~~~d~g~~~~~l~~~~------~~~~~----- 187 (246)
T 3aiz_C 125 N----LEFPFKAKALT-VTFTDIIDEIEDIGGDSITFKAE-GGKLYLSANSDMGSSTIELSTEN------GGLLE----- 187 (246)
T ss_dssp C----CCCSEEEEEEH-HHHHHHHHHHHHHCCSEEEEEEE-TTEEEEEEECSSCEEEEEECTTT------TSCSE-----
T ss_pred C----CcccEEEEEEH-HHHHHHHHHHhhCCCCEEEEEEE-CCEEEEEEEcCCceEEEEEecCC------CccEE-----
Confidence 2 14677888998 9999999999999 999999996 67899999999899999987542 00000
Q ss_pred ccchhhhhcCCCCeEEEEEechhHHhhccccccCCcEEEEEEECCCeE-EE------EEEEEEe
Q 038444 240 AQTRSERAISRGDAQSVQVSVKHFSKSLQCHLAKPDCAFFGIAPQGAC-LT------VIFQFFI 296 (300)
Q Consensus 240 ~~~~~~~~~~~~~~~~V~Vd~k~l~~~L~~~~~~p~~v~~~i~~~~~~-~~------~~l~y~i 296 (300)
. + ++..++..+.|-|..+|+...+ .+.|.+.+.++..+ +. ..++|||
T Consensus 188 ----~-~----ge~~~i~Fn~~yL~d~lk~~~~-s~~V~l~~~~~~p~~i~~~~~~~~~~~y~i 241 (246)
T 3aiz_C 188 ----S-E----GGDAESVYGLEYVVNTSKMRKP-SDTVEIAFGSQIPLKLRYNLPQGGYADFYI 241 (246)
T ss_dssp ----E-E----ECCEEEEEEHHHHHTTGGGTTT-CSEEEEEEETTEEEEEEEEETTTEEEEEEE
T ss_pred ----E-E----EeeEEEEEEHHHHHHHhhhccC-CCeEEEEecCCCcEEEEEEeCCCCEEEEEE
Confidence 0 0 1357999999999999986544 78999999987666 32 3567776
No 7
>3lx2_A DNA polymerase sliding clamp 2; PCNA, DNA processivity factor, trimer, toroidal, DNA replica DNA-binding, DNA binding protein; HET: DNA; 2.40A {Thermococcus kodakarensis}
Probab=99.70 E-value=1.5e-14 Score=131.78 Aligned_cols=236 Identities=14% Similarity=0.103 Sum_probs=177.0
Q ss_pred CeeeEEecCchhhhHHHhHHHHHHhcCCEEEEEEecCeEEEEeeecCCCceEEEEEEccCCCcCeeEeeecCCCeEEEEE
Q 038444 1 MKFKAFLTDNGVNLLEKRFLPALDKMGKVCHLFLTREKAYFLHNLLSGEGIQCVAQFHKETLFDDYRISSQNEDCIAFAI 80 (300)
Q Consensus 1 MkFrA~i~d~~~~~l~~~iv~~i~kl~k~cvlrlt~~~l~~i~~~~~~~g~qvw~~l~~~~lF~ey~ieS~~~N~I~lev 80 (300)
|+|||++.+.. . |++++.+++++-..|.+.++++.+.+... ....-.++.+.++.+ .|++|+|+. .+.+-+
T Consensus 1 m~f~a~~~~a~--~-lk~ii~ai~~i~~~v~~~~~~~gl~~~A~-D~~rvalv~~~l~~~-~F~~y~~~~----~~~igi 71 (259)
T 3lx2_A 1 MTFEIVFDSAR--E-FESLIATLEKFFDEAVFQVNMEGIQMRAI-DPSRVVLVDLNLPEM-LFSKYSVES----EEAIAF 71 (259)
T ss_dssp -CEEEEESCHH--H-HHHHHHHHHTTCSEEEEEECSSEEEEEEE-CTTSCEEEEEEEEGG-GSSEEEESS----CEEEEE
T ss_pred CeEEEEECcHH--H-HHHHHHHHHHHhceEEEEEecCeEEEEEE-CCCCEEEEEEEEChH-hcEEEEcCC----CEEEEE
Confidence 99999999873 4 69999999999999999999999999763 345678899999888 799999986 588899
Q ss_pred ehHHHHHHHhccccccccccccCCCCceEEEEEeecCCCCCCCCCceEEEEEECceeEEEEEeecCcccChhhhchhhhh
Q 038444 81 DISLLQRAVRSGVSICSEIGAAGSAANRLQIKLVKKLPPNCTQAMPFLTFETKGYKSAVIQDVPISKPLSRAQGLELQTA 160 (300)
Q Consensus 81 ~~~~L~raLrsa~~~~~~~~~~~~~a~~v~ikL~kk~~~~~~~~~P~L~~~~~g~~~~v~hdvPV~~vl~~~~~~~l~eP 160 (300)
++..|.++||.+.+ .+.++|+ ... ...|.|.+.+.. .....+++ +-... +++..|
T Consensus 72 ~l~~L~kiLk~~~~-----------~d~v~i~--~~~-------~~~l~~~~e~~~-~~~~~~rL---id~~~-~~~~iP 126 (259)
T 3lx2_A 72 DLKRFLKVLKLARS-----------RDTLVLR--KGG-------ENFLEVGLLGDE-NTWFKLPL---IDANT-PEIEIP 126 (259)
T ss_dssp EHHHHHHHHTTCCT-----------TCEEEEE--ECS-------SSEEEEEEESSS-EEEEEEEC---CCCCC-CCCCCC
T ss_pred EHHHHHHHHHhcCC-----------CCEEEEE--ECC-------CCEEEEEEecCc-eEEEEEEe---eccCc-ccCCCC
Confidence 99999999999975 5677777 332 367889888765 23344444 54443 345445
Q ss_pred hcccCCCCCeEEEcCChhhHHHHHHhhhccCCEEEEEEEcCCeEEEEEeecceEEeEEeccccccccccCCCCccccccc
Q 038444 161 LDMAQDIPPTLVQVPDLNQLQNFVHRMKHVGDLLNVSIYKYGDLHLQISTTLITLGAEFRKLLVIGEKAVAPSEDRNLSA 240 (300)
Q Consensus 161 ~~~~~~~p~~~i~lP~l~~l~~ivdR~k~~~~~v~i~an~~G~L~l~v~t~~v~v~t~~~~L~~~~~~~~~~~~~~~~~~ 240 (300)
. ...+..+.||+ +.|+.+++|+..+|+.|+|+++ ++.++|+.++|..++.+.+..=. .+ .
T Consensus 127 ~----~e~~~~v~~~s-~~f~~~i~~~~~~sd~V~i~~~-~~~v~~ss~gd~G~~~~~l~~~~---------~~---~-- 186 (259)
T 3lx2_A 127 S----LPWTVKAVVLA-GALKRAVKAAKLVSDSIYFMAT-PEKLTFKAEGNDSEVRTVLTMED---------PG---L-- 186 (259)
T ss_dssp C----CCCCEEEEEEH-HHHHHHHHHHHHHCSEEEEEEC-SSCEEEEEECSSCEEEEEECTTS---------TT---E--
T ss_pred C----CceeEEEEEEH-HHHHHHHHHHHhcCCEEEEEEE-CCEEEEEEEecCcEEEEEEcCCC---------Cc---e--
Confidence 2 22346888999 9999999999999999999997 56899999988888888886310 00 0
Q ss_pred cchhhhhcCCC-CeEEEEEechhHHhhccccccCCcEEEEEEECCCeE-EE------EEEEEEe
Q 038444 241 QTRSERAISRG-DAQSVQVSVKHFSKSLQCHLAKPDCAFFGIAPQGAC-LT------VIFQFFI 296 (300)
Q Consensus 241 ~~~~~~~~~~~-~~~~V~Vd~k~l~~~L~~~~~~p~~v~~~i~~~~~~-~~------~~l~y~i 296 (300)
.....+ +.++.....|-|..+++.-.. .++|.+.+.++..+ +. ..+.||+
T Consensus 187 -----~~~~~~~e~~~~~F~~~YL~~~~Ka~~~-s~~V~l~~~~~~Pl~l~~~i~~~g~~~y~l 244 (259)
T 3lx2_A 187 -----LDLEHKMTKAKSAYGVAYLEDILRSLAD-ADEVIIRFGFDIPLLLKYMVRDAGEVSFLI 244 (259)
T ss_dssp -----EEEEESSSCEEEEEEHHHHHHHHSSSCT-TSEEEEEECTTSCEEEEEEETTTEEEEEEE
T ss_pred -----EEEEecCceEEEEEEHHHHHhhhccccC-CCeEEEEeCCCCCEEEEEEeCCCeEEEEEE
Confidence 011112 357889999999999985433 35888999887765 32 4567765
No 8
>3aiz_A DNA polymerase sliding clamp B; protein-protein complex, replication; HET: DNA; 2.80A {Sulfolobus tokodaii} PDB: 3aix_B*
Probab=99.68 E-value=7.7e-15 Score=132.14 Aligned_cols=234 Identities=12% Similarity=0.081 Sum_probs=178.6
Q ss_pred eeEEecCchhhhHHHhHHHHHHhcCCEEEEEEecCeEEEEeeecCCCceEEEEEEccCCCcCeeEeeecCCCeEEEEEeh
Q 038444 3 FKAFLTDNGVNLLEKRFLPALDKMGKVCHLFLTREKAYFLHNLLSGEGIQCVAQFHKETLFDDYRISSQNEDCIAFAIDI 82 (300)
Q Consensus 3 FrA~i~d~~~~~l~~~iv~~i~kl~k~cvlrlt~~~l~~i~~~~~~~g~qvw~~l~~~~lF~ey~ieS~~~N~I~lev~~ 82 (300)
|||++.+.+ . |++++.++.++-+.|.+.++++.++++.+.. ..-.+++..++.+ .|++|+|+. +|.+.++.
T Consensus 2 f~a~~~~~~--~-~k~i~~~i~~~l~gv~~~~~~~~l~~vatD~-~rla~~~~~l~~~-~f~~y~~~~----~i~~~~~l 72 (248)
T 3aiz_A 2 IKATYSSAK--D-FYSLLSGLLKVTDEIILNFTEDSIFSRYLTD-DKVLMVIFKIPKE-YLEDYTIDK----PLGIKINI 72 (248)
T ss_dssp CEEEESCHH--H-HHHHHTTCTTCCSEEEEEECSSEEEEEEECT-TSSEEEEEEEEGG-GCEEEECSS----CEEEEEEH
T ss_pred eEEEecchH--H-HHHHHHHHHHHHheEEEEEccCcEEEEEECC-CCEEEEEEEECHH-hCceEEcCC----CeEEEEEH
Confidence 999999773 4 6999999999999999999999999987543 3456777788755 899999976 68899999
Q ss_pred HHHHHHHhccccccccccccCCCCceEEEEEeecCCCCCCCCCceEEEEEECc--eeEEEEEeecCcccChhhhchhhhh
Q 038444 83 SLLQRAVRSGVSICSEIGAAGSAANRLQIKLVKKLPPNCTQAMPFLTFETKGY--KSAVIQDVPISKPLSRAQGLELQTA 160 (300)
Q Consensus 83 ~~L~raLrsa~~~~~~~~~~~~~a~~v~ikL~kk~~~~~~~~~P~L~~~~~g~--~~~v~hdvPV~~vl~~~~~~~l~eP 160 (300)
..|.++|+.+ + .+.++|++.+.+ ..|.|.+.+. .+..++.+++ +-... .+|..|
T Consensus 73 ~~l~kil~~~-~-----------~~~v~i~~~~~~--------~~l~~~~~~~~~~~~~~~~~rl---idg~~-p~~~iP 128 (248)
T 3aiz_A 73 NDLKKILGKA-K-----------SKSATVTLEETE--------AGLKVTVRDEKTGTRSNIYIKG---EKTSI-DQLTEP 128 (248)
T ss_dssp HHHHHHHHTC-S-----------STTCEEEEEECS--------SEEEEEEEETTTTEEEEEEEEC---EEECC-CCCCCC
T ss_pred HHHHHHHhhc-C-----------CCEEEEEEeCCC--------CeEEEEEEeCCCCEEEEEEEEc---cccCc-ccCCCC
Confidence 9999999987 4 466999998764 5788887753 3444444444 44333 556666
Q ss_pred hcccCCCCCeEEEcCChhhHHHHHHhhhccCCEEEEEEEcCCeEEEEEeecceEEeEEeccccccccccCCCCccccccc
Q 038444 161 LDMAQDIPPTLVQVPDLNQLQNFVHRMKHVGDLLNVSIYKYGDLHLQISTTLITLGAEFRKLLVIGEKAVAPSEDRNLSA 240 (300)
Q Consensus 161 ~~~~~~~p~~~i~lP~l~~l~~ivdR~k~~~~~v~i~an~~G~L~l~v~t~~v~v~t~~~~L~~~~~~~~~~~~~~~~~~ 240 (300)
. ...+..+.||+ +.|+..++|+..+|+.|+|+++ +|.|+|+.++|..+...+|..-. + ..+
T Consensus 129 ~----~~~~~~v~~~~-~~l~~av~r~~~~s~~V~i~~~-~~~l~ls~~~d~g~~~~~~~~~~-~------~~~------ 189 (248)
T 3aiz_A 129 K----VNLSVTFTTDG-DVLKDIARDLSLVGEEVEISAD-ENTVTLSTEEAGRTYKSLLKQDK-P------LKS------ 189 (248)
T ss_dssp C----CCCSEEEEECH-HHHHHHHHHHTTSCSEEEEEEC-SSEEEEEEEETTEEEEEEEEETB-E------ESE------
T ss_pred C----CCccEEEEEeH-HHHHHHHHHHHhcCCEEEEEEe-CCEEEEEEEccCceEEEEEcCCC-c------ceE------
Confidence 2 14667888998 9999999999999999999996 67899999989888888886411 0 000
Q ss_pred cchhhhhcCCCCeEEEEEechhHHhhccccccCCcEEEEEEECCCeEE-E------EEEEEEe
Q 038444 241 QTRSERAISRGDAQSVQVSVKHFSKSLQCHLAKPDCAFFGIAPQGACL-T------VIFQFFI 296 (300)
Q Consensus 241 ~~~~~~~~~~~~~~~V~Vd~k~l~~~L~~~~~~p~~v~~~i~~~~~~~-~------~~l~y~i 296 (300)
-+.|+..++..+.|-|..+|+...+ .++|.+.+.++..++ . ..++|||
T Consensus 190 -------~~~ge~~~i~fn~~yL~d~lk~~~~-s~~V~l~~~~~~p~~i~~~~~~~~~~~y~i 244 (248)
T 3aiz_A 190 -------LNVESPSKAVYSIEVLKDVFKVTSI-SQNVTVGFGNNIPMKIEVPTDSGGQLIFWI 244 (248)
T ss_dssp -------EEESSCEEEEEEHHHHHHHHHHGGG-CSSEEEEEETTEEEEEEEECTTSCEEEEEE
T ss_pred -------EecCCceEEEEEHHHHHHHhhhccC-CCeEEEEEcCCCCEEEEEEeCCCcEEEEEE
Confidence 0012458999999999999987654 778999999876663 2 2466765
No 9
>2ijx_A DNA polymerase sliding clamp A; PCNA3 subunit, protein-protein interaction, PCNA123 heterotr binding protein; HET: DNA; 1.90A {Sulfolobus solfataricus} PDB: 2nti_F* 2hii_C 2hik_C 2ix2_C*
Probab=99.63 E-value=2.2e-13 Score=122.25 Aligned_cols=233 Identities=11% Similarity=0.092 Sum_probs=176.2
Q ss_pred eeEEecCchhhhHHHhHHHHHHhcCCEEEEEEecCeEEEEeeecCCCceEEEEEEccCCCcCeeEeeecCCCeEEEEEeh
Q 038444 3 FKAFLTDNGVNLLEKRFLPALDKMGKVCHLFLTREKAYFLHNLLSGEGIQCVAQFHKETLFDDYRISSQNEDCIAFAIDI 82 (300)
Q Consensus 3 FrA~i~d~~~~~l~~~iv~~i~kl~k~cvlrlt~~~l~~i~~~~~~~g~qvw~~l~~~~lF~ey~ieS~~~N~I~lev~~ 82 (300)
|||++.+. .. |++++.++.++-+.|.+.++++.++++.+.. ..-.+++..++.+ .|++|+++. .|.+.++.
T Consensus 1 ~~a~~~~a--~~-~~~i~~~i~~~l~gv~~~~~~~~l~~vatD~-~rla~~~~~l~~~-~f~~y~~~~----~i~~~~~l 71 (244)
T 2ijx_A 1 MKVVYDDV--RV-LKDIIQALARLVDEAVLKFKQDSVELVALDR-AHISLISVNLPRE-MFKEYDVND----EFKFGFNT 71 (244)
T ss_dssp CEEEESCH--HH-HHHHHHHHHHHCSEEEEEECSSEEEEEEECT-TSSEEEEEEEEGG-GCSEEECSS----CEEEEEEH
T ss_pred CEEEECch--HH-HHHHHHHHHHHhceEEEEEecCeEEEEEECC-CcEEEEEEEECHH-hCceEEcCC----CEEEEEEH
Confidence 79999977 34 6899999999999999999999999987543 3456777778755 899999976 68899999
Q ss_pred HHHHHHHhccccccccccccCCCCceEEEEEeecCCCCCCCCCceEEEEEECceeEEEEEeecCcccChhhhchhhhhhc
Q 038444 83 SLLQRAVRSGVSICSEIGAAGSAANRLQIKLVKKLPPNCTQAMPFLTFETKGYKSAVIQDVPISKPLSRAQGLELQTALD 162 (300)
Q Consensus 83 ~~L~raLrsa~~~~~~~~~~~~~a~~v~ikL~kk~~~~~~~~~P~L~~~~~g~~~~v~hdvPV~~vl~~~~~~~l~eP~~ 162 (300)
..|.++|+.+.+ .+.++|++...+ ..+.|.+.+ +..++.+++ +-... .+|..|.
T Consensus 72 ~~l~kiL~~~~~-----------~~~v~i~~~~~~--------~~l~~~~~~--~~~~~~~rl---idg~~-p~~~iP~- 125 (244)
T 2ijx_A 72 QYLMKILKVAKR-----------KEAIEIASESPD--------SVIINIIGS--TNREFNVRN---LEVSE-QEIPEIN- 125 (244)
T ss_dssp HHHHHHHTTCCS-----------SCEEEEEEEETT--------EEEEEEESS--SEEEEEEEC---CCCCC-CCCCCCC-
T ss_pred HHHHHHHhhCCC-----------CCEEEEEecCCC--------CEEEEEECC--EEEEEEEEC---CccCc-ccCCCCC-
Confidence 999999998764 567999997754 678888843 234455544 44333 5566662
Q ss_pred ccCCCCCeEEEcCChhhHHHHHHhhhccCCEEEEEEEcCCeEEEEEeecceEEeEEeccccccccccCCCCccccccccc
Q 038444 163 MAQDIPPTLVQVPDLNQLQNFVHRMKHVGDLLNVSIYKYGDLHLQISTTLITLGAEFRKLLVIGEKAVAPSEDRNLSAQT 242 (300)
Q Consensus 163 ~~~~~p~~~i~lP~l~~l~~ivdR~k~~~~~v~i~an~~G~L~l~v~t~~v~v~t~~~~L~~~~~~~~~~~~~~~~~~~~ 242 (300)
...+..+.||+ +.|+..++|+..+++.|+|+++ +|.|+|+.++|..+ ..+|..-. +..
T Consensus 126 ---~~~~~~i~i~~-~~l~~a~~r~~~~s~~V~l~~~-~~~l~ls~~~d~g~-~~~l~~~~--------~~~-------- 183 (244)
T 2ijx_A 126 ---LQFDISATISS-DGFKSAISEVSTVTDNVVVEGH-EDRILIKAEGESEV-EVEFSKDT--------GGL-------- 183 (244)
T ss_dssp ---CCCSEEEEEEH-HHHHHHHHHHTTTCSEEEEEEE-TTEEEEEETTCTTS-EEEEETTT--------TCE--------
T ss_pred ---CcccEEEEEEH-HHHHHHHHHHHhcCCEEEEEEE-CCEEEEEEEecCce-EEEEeCCC--------Ccc--------
Confidence 14667888998 9999999999999999999996 67899999888888 88886411 000
Q ss_pred hhhhhcCCCCeEEEEEechhHHhhccccccCCcEEEEEEECCCeE-EE------EEEEEEe
Q 038444 243 RSERAISRGDAQSVQVSVKHFSKSLQCHLAKPDCAFFGIAPQGAC-LT------VIFQFFI 296 (300)
Q Consensus 243 ~~~~~~~~~~~~~V~Vd~k~l~~~L~~~~~~p~~v~~~i~~~~~~-~~------~~l~y~i 296 (300)
..-+.|+..++..+.|-|..+|+...+ .++|.+.+.++..+ +. ..++|||
T Consensus 184 ---~~~~~ge~~~i~Fn~~yL~d~lk~~~~-s~~V~l~~~~~~p~~i~~~~~~~~~~~y~i 240 (244)
T 2ijx_A 184 ---QDLEFSKESKNSYSAEYLDDVLSLTKL-SDYVKISFGNQKPLQLFFNMEGGGKVTYLL 240 (244)
T ss_dssp ---EEEEESSCEEEEEEHHHHHHTGGGGGG-CSEEEEEEETTEEEEEEEECGGGCEEEEEE
T ss_pred ---EEEEcCCceEEEEEHHHHHHHhhhccC-CCEEEEEEcCCCCEEEEEEeCCCcEEEEEE
Confidence 001112468999999999999987654 78999999987666 32 2466765
No 10
>1ud9_A DNA polymerase sliding clamp A; DNA-binding, DNA replication, DNA binding protein; HET: DNA; 1.68A {Sulfolobus tokodaii} SCOP: d.131.1.2 d.131.1.2
Probab=99.62 E-value=2.9e-13 Score=121.59 Aligned_cols=233 Identities=13% Similarity=0.067 Sum_probs=175.3
Q ss_pred eeEEecCchhhhHHHhHHHHHHhcCCEEEEEEecCeEEEEeeecCCCceEEEEEEccCCCcCeeEeeecCCCeEEEEEeh
Q 038444 3 FKAFLTDNGVNLLEKRFLPALDKMGKVCHLFLTREKAYFLHNLLSGEGIQCVAQFHKETLFDDYRISSQNEDCIAFAIDI 82 (300)
Q Consensus 3 FrA~i~d~~~~~l~~~iv~~i~kl~k~cvlrlt~~~l~~i~~~~~~~g~qvw~~l~~~~lF~ey~ieS~~~N~I~lev~~ 82 (300)
|||++.+.+ . |++++.++.++-+.|.+.++++.++++.+.. ..-.+++..++.+ .|++|+++. .|.+.++.
T Consensus 1 f~a~~~~~~--~-~k~i~~~i~~~l~gv~~~~~~~~l~~vatD~-~rla~~~~~l~~~-~f~~y~~~~----~i~~~~~l 71 (245)
T 1ud9_A 1 AHIVYDDVR--D-LKAIIQALLKLVDEALFDIKPEGIQLVAIDK-AHISLIKIELPKE-MFKEYDVPE----EFKFGFNT 71 (245)
T ss_dssp CEEEESCHH--H-HHHHHHHHHHHCSEEEEEEETTEEEEEEECT-TSSEEEEEEEEGG-GSSEEECSS----CEEEEEEH
T ss_pred CEEEeCchH--H-HHHHHHHHHHHhceEEEEEcCCeEEEEEECC-CcEEEEEEEEChH-hCeEEEcCC----CeEEEEEH
Confidence 899999773 4 6999999999999999999999999987543 3456777778755 899999976 68899999
Q ss_pred HHHHHHHhccccccccccccCCCCceEEEEEeecCCCCCCCCCceEEEEEECceeEEEEEeecCcccChhhhchhhhhhc
Q 038444 83 SLLQRAVRSGVSICSEIGAAGSAANRLQIKLVKKLPPNCTQAMPFLTFETKGYKSAVIQDVPISKPLSRAQGLELQTALD 162 (300)
Q Consensus 83 ~~L~raLrsa~~~~~~~~~~~~~a~~v~ikL~kk~~~~~~~~~P~L~~~~~g~~~~v~hdvPV~~vl~~~~~~~l~eP~~ 162 (300)
..|.++|+.+.+ .+.++|++..++ +.+.|.+.+. ..++.+++ +-... .+|..|.
T Consensus 72 ~~l~kiL~~~~~-----------~~~v~i~~~~~~--------~~l~~~~~~~--~~~~~~rl---idg~~-p~~~ip~- 125 (245)
T 1ud9_A 72 QYMSKLLKAAKR-----------KEEIIIDADSPE--------VVKLTLSGAL--NRVFNVNN---IEVLP-PEVPEVN- 125 (245)
T ss_dssp HHHHHHHTTCCS-----------CCCEEEEEEETT--------EEEEEECSSS--CEEEEEEC---CCCCC-CCCC----
T ss_pred HHHHHHHhcCCC-----------CCEEEEEEcCCC--------CEEEEEECCE--EEEEEEEC---cccCc-ccCCCCC-
Confidence 999999998764 467999997653 6888888432 34444444 44333 5566662
Q ss_pred ccCCCCCeEEEcCChhhHHHHHHhhhccCCEEEEEEEcCCeEEEEEeecceEEeEEeccccccccccCCCCccccccccc
Q 038444 163 MAQDIPPTLVQVPDLNQLQNFVHRMKHVGDLLNVSIYKYGDLHLQISTTLITLGAEFRKLLVIGEKAVAPSEDRNLSAQT 242 (300)
Q Consensus 163 ~~~~~p~~~i~lP~l~~l~~ivdR~k~~~~~v~i~an~~G~L~l~v~t~~v~v~t~~~~L~~~~~~~~~~~~~~~~~~~~ 242 (300)
...+..+.||+ +.|+..++|+..+++.|+|+++ +|.|+|+.++|..+ ..+|..-. + ..
T Consensus 126 ---~~~~~~i~i~~-~~l~~a~~r~~~~s~~V~l~~~-~~~l~ls~~~d~g~-~~~l~~~~-------~-~~-------- 183 (245)
T 1ud9_A 126 ---LEFDIKATINA-SGLKNAIGEIAEVADTLLISGN-EEKVVVKGEGENKV-EVEFSKDT-------G-SL-------- 183 (245)
T ss_dssp ---CCCSEEEEEEH-HHHHHHHHHHHHHCSEEEEEEC-SSEEEEEESSSSCC-CEEEEGGG-------T-CE--------
T ss_pred ---CCccEEEEEeH-HHHHHHHHHHHhcCCEEEEEEE-CCEEEEEEEccCce-EEEEecCC-------C-cc--------
Confidence 14667888998 9999999999999999999996 67899999888888 88886411 0 00
Q ss_pred hhhhhcCCCCeEEEEEechhHHhhccccccCCcEEEEEEECCCeE-EE------EEEEEEe
Q 038444 243 RSERAISRGDAQSVQVSVKHFSKSLQCHLAKPDCAFFGIAPQGAC-LT------VIFQFFI 296 (300)
Q Consensus 243 ~~~~~~~~~~~~~V~Vd~k~l~~~L~~~~~~p~~v~~~i~~~~~~-~~------~~l~y~i 296 (300)
..-+.|+..++..+.|-|..+|+...+ .++|.+.+.++..+ +. ..++|||
T Consensus 184 ---~~~~~ge~~~i~Fn~~yL~d~lk~~~~-s~~V~l~~~~~~p~~i~~~~~~~~~~~y~i 240 (245)
T 1ud9_A 184 ---ADIEFNKESSSAYDVEYLNDIISLTKL-SDYVKVAFADQKPMQLEFNMEGGGKVTYLL 240 (245)
T ss_dssp ---EEEEESSCEEEEEEHHHHHHTGGGGGG-CSEEEEEECTTSCEEEEEECGGGCEEEEEE
T ss_pred ---EEEEeCCceeEEEEHHHHHHHhhhccc-CCEEEEEEcCCCCEEEEEEeCCCcEEEEEE
Confidence 001112468999999999999987654 78999999988766 32 2466766
No 11
>1rwz_A DNA polymerase sliding clamp; torus, processivity factor, replication; HET: DNA; 1.80A {Archaeoglobus fulgidus} SCOP: d.131.1.2 d.131.1.2 PDB: 1rxm_A* 1rxz_A* 3p83_A*
Probab=99.61 E-value=1.2e-12 Score=117.72 Aligned_cols=231 Identities=10% Similarity=0.078 Sum_probs=175.7
Q ss_pred eEEecCchhhhHHHhHHHHHHhcCCEEEEEEecCeEEEEeeecCCCceEEEEEEccCCCcCeeEeeecCCCeEEEEEehH
Q 038444 4 KAFLTDNGVNLLEKRFLPALDKMGKVCHLFLTREKAYFLHNLLSGEGIQCVAQFHKETLFDDYRISSQNEDCIAFAIDIS 83 (300)
Q Consensus 4 rA~i~d~~~~~l~~~iv~~i~kl~k~cvlrlt~~~l~~i~~~~~~~g~qvw~~l~~~~lF~ey~ieS~~~N~I~lev~~~ 83 (300)
||++.+. .. |++++.++.++-+.|.+.++++.|+++.+.. ..-.+++..++.+ .|++|+|+. .|.+.++..
T Consensus 2 ~~~~~~~--~~-~~~i~~~i~~~l~gv~~~~~~~~l~~vatD~-~rla~~~~~l~~~-~f~~y~~~~----~i~~~~~l~ 72 (245)
T 1rwz_A 2 IDVIMTG--EL-LKTVTRAIVALVSEARIHFLEKGLHSRAVDP-ANVAMVIVDIPKD-SFEVYNIDE----EKTIGVDMD 72 (245)
T ss_dssp EEEEEEH--HH-HHHHHHHHHTTCSEEEEEEETTEEEEEEECT-TSSEEEEEEEEGG-GSSEEEESS----CEEEEEEHH
T ss_pred eEEecch--HH-HHHHHHHHHHHhceEEEEEcCCeEEEEEECC-CcEEEEEEEEChH-hCceEEcCC----CeEEEEEHH
Confidence 6778766 35 6899999999999999999999999987543 3456777777655 899999976 688999999
Q ss_pred HHHHHHhccccccccccccCCCCceEEEEEeecCCCCCCCCCceEEEEEECceeEEEEEeecCcccChhhhchhhhhhcc
Q 038444 84 LLQRAVRSGVSICSEIGAAGSAANRLQIKLVKKLPPNCTQAMPFLTFETKGYKSAVIQDVPISKPLSRAQGLELQTALDM 163 (300)
Q Consensus 84 ~L~raLrsa~~~~~~~~~~~~~a~~v~ikL~kk~~~~~~~~~P~L~~~~~g~~~~v~hdvPV~~vl~~~~~~~l~eP~~~ 163 (300)
.|.+.|+.+.+ .+.++|++..+ . .|.|.+.+ .+..+.+ |++..+. .+|..|.
T Consensus 73 el~kiL~~~~~-----------~~~v~i~~~~~--------~-~l~~~~~~----~~~~~~~-rlidg~~-p~~~iP~-- 124 (245)
T 1rwz_A 73 RIFDISKSIST-----------KDLVELIVEDE--------S-TLKVKFGS----VEYKVAL-IDPSAIR-KEPRIPE-- 124 (245)
T ss_dssp HHHHHHTTSCT-----------TSEEEEEESSS--------S-EEEEEETT----EEEEEEC-BCGGGSC-CCCCCCC--
T ss_pred HHHHHHhhCCC-----------CCEEEEEECCC--------C-eEEEEEee----eEEEEEE-EccccCc-cCCCCCC--
Confidence 99999998764 46688888432 2 77888765 2678888 6787655 6677662
Q ss_pred cCCCCCeEEEcCChhhHHHHHHhhhccCCEEEEEEEcCCeEEEEEeecceEEeEEeccccccccccCCCCccccccccch
Q 038444 164 AQDIPPTLVQVPDLNQLQNFVHRMKHVGDLLNVSIYKYGDLHLQISTTLITLGAEFRKLLVIGEKAVAPSEDRNLSAQTR 243 (300)
Q Consensus 164 ~~~~p~~~i~lP~l~~l~~ivdR~k~~~~~v~i~an~~G~L~l~v~t~~v~v~t~~~~L~~~~~~~~~~~~~~~~~~~~~ 243 (300)
...+..+.||. +.|+..++|+..+|+.|+|+++ +|.|+|+.++|..++...... + ..
T Consensus 125 --~~~~~~v~~~~-~~l~~av~r~~~ls~~V~l~~~-~~~l~ls~~~d~g~~~~~~~~------------e-~~------ 181 (245)
T 1rwz_A 125 --LELPAKIVMDA-GEFKKAIAAADKISDQVIFRSD-KEGFRIEAKGDVDSIVFHMTE------------T-EL------ 181 (245)
T ss_dssp --CCCSEEEEEEH-HHHHHHHHHHHTTCSEEEEEEE-TTEEEEEEECSSCEEEEEECG------------G-GS------
T ss_pred --CcccEEEEEEH-HHHHHHHHHHHhcCCEEEEEEE-CCEEEEEEEccCcEEEEecCC------------C-cc------
Confidence 14667888998 9999999999999999999996 578999998887775543331 0 00
Q ss_pred hhhhcCCCCeEEEEEechhHHhhccccccCCcEEEEEEECCCeE-EE-------EEEEEEe-cc
Q 038444 244 SERAISRGDAQSVQVSVKHFSKSLQCHLAKPDCAFFGIAPQGAC-LT-------VIFQFFI-PG 298 (300)
Q Consensus 244 ~~~~~~~~~~~~V~Vd~k~l~~~L~~~~~~p~~v~~~i~~~~~~-~~-------~~l~y~i-p~ 298 (300)
..-+.++ .++..+.|-|..+|+...+ .++|.+.+.++..+ +. ..+.||| |-
T Consensus 182 --~~~~g~~-~~i~Fn~~yL~d~lk~~~~-s~~V~l~~~~~~p~~i~~~~~~~~~~~~y~i~P~ 241 (245)
T 1rwz_A 182 --IEFNGGE-ARSMFSVDYLKEFCKVAGS-GDLLTIHLGTNYPVRLVFELVGGRAKVEYILAPR 241 (245)
T ss_dssp --SEECCCC-EEEEEEHHHHHHHGGGCCT-TCEEEEEECSSSCEEEEEEETTTTEEEEEEECCB
T ss_pred --EEEEEee-EEEEEeHHHHHHHhhhccC-CCeEEEEECCCCCEEEEEEECCCcEEEEEEEccc
Confidence 0011113 8999999999999986544 78999999988766 32 3577877 53
No 12
>3fds_C DNA polymerase sliding clamp B; protein-protein complex, DNA damage, DNA repair, DNA replica DNA-binding, DNA-directed DNA polymerase; HET: DNA 1PE PGE; 2.05A {Sulfolobus solfataricus} PDB: 2io4_A* 2nti_D* 2hii_A 2hik_A 2ix2_A* 2izo_C*
Probab=99.58 E-value=5.2e-13 Score=121.17 Aligned_cols=233 Identities=13% Similarity=0.130 Sum_probs=172.7
Q ss_pred eeEEecCchhhhHHHhHHHHHHhcCCEEEEEEecCeEEEEeeecCCCceEEEEEEccCCCcCeeEeeecCCCeEEEEEeh
Q 038444 3 FKAFLTDNGVNLLEKRFLPALDKMGKVCHLFLTREKAYFLHNLLSGEGIQCVAQFHKETLFDDYRISSQNEDCIAFAIDI 82 (300)
Q Consensus 3 FrA~i~d~~~~~l~~~iv~~i~kl~k~cvlrlt~~~l~~i~~~~~~~g~qvw~~l~~~~lF~ey~ieS~~~N~I~lev~~ 82 (300)
|+|++.+. ..|++++.+++++..+|.+.++++.+.+.. ..++.-.++-..++.+ .|++|+|+. .+.+-++.
T Consensus 2 f~a~~~~a---~~lk~ii~ai~~lv~e~~~~~~~~Gi~l~a-mD~s~valv~l~l~~~-~F~~Y~~d~----~~~~gvnl 72 (249)
T 3fds_C 2 VKIVYPNA---KDFFSFINSITNVTDSIILNFTEDGIFSRH-LTEDKVLMAIMRIPKD-VLSEYSIDS----PTSVKLDV 72 (249)
T ss_dssp CEEEESCH---HHHHHHHHHHTTTCSSEEEEECSSEEEEEE-ECTTSSEEEEEEEEGG-GSSEEECSS----CEEEEECH
T ss_pred EEEEeCch---HHHHHHHHHHHHHhCeEEEEEcCCeEEEEE-ECCCcEEEEEEEECHH-hCeEEECCC----CeEEEEEH
Confidence 99999977 346999999999999999999999999864 4567889999999998 999999975 68899999
Q ss_pred HHHHHHHhccc-cccccccccCCCCceEEEEEeecCCCCCCCCCceEEEEEECce--eEEEEEeecCcccChhhhchhhh
Q 038444 83 SLLQRAVRSGV-SICSEIGAAGSAANRLQIKLVKKLPPNCTQAMPFLTFETKGYK--SAVIQDVPISKPLSRAQGLELQT 159 (300)
Q Consensus 83 ~~L~raLrsa~-~~~~~~~~~~~~a~~v~ikL~kk~~~~~~~~~P~L~~~~~g~~--~~v~hdvPV~~vl~~~~~~~l~e 159 (300)
+.|.++||.+. + .+ +|++...+ ..|.+.+++.+ +.-+..+|. +.. +-+++..
T Consensus 73 ~~l~kiLk~~~~~-----------~d--~l~~~~~~--------~~l~i~~e~~~~~~~~~~~l~l---~d~-~~e~~~~ 127 (249)
T 3fds_C 73 SSVKKILSKASSK-----------KA--TIELTETD--------SGLKIIIRDEKSGAKSTIYIKA---EKG-QVEQLTE 127 (249)
T ss_dssp HHHHHHHTTCCCS-----------CE--EEEEEECS--------SEEEEEEEETTTCCEEEEEEEC---EEC-CCCCCCC
T ss_pred HHHHHHHHhhCCC-----------CC--EEEEecCC--------CEEEEEEEeCCCCEEEEEEEEC---CCC-ccccCCC
Confidence 99999999998 5 34 77776543 46888887643 444455555 222 2244544
Q ss_pred hhcccCCCCCeEEEcCChhhHHHHHHhhhccCCEEEEEEEcCCeEEEEEeecceEEeEEeccccccccccCCCCcccccc
Q 038444 160 ALDMAQDIPPTLVQVPDLNQLQNFVHRMKHVGDLLNVSIYKYGDLHLQISTTLITLGAEFRKLLVIGEKAVAPSEDRNLS 239 (300)
Q Consensus 160 P~~~~~~~p~~~i~lP~l~~l~~ivdR~k~~~~~v~i~an~~G~L~l~v~t~~v~v~t~~~~L~~~~~~~~~~~~~~~~~ 239 (300)
|. ..-+..+.||+ ..|+.++..+..+|+.++|+++.+ .+.|+.+.+..+..+.+.. ..+..
T Consensus 128 p~----~e~~~~v~m~s-~~f~~~~~dl~~~sd~v~i~~~~~-~~~f~~~gd~~~~~~~~~~--------~~~l~----- 188 (249)
T 3fds_C 128 PK----VNLAVNFTTDE-SVLNVIAADVTLVGEEMRISTEED-KIKIEAGEEGKRYVAFLMK--------DKPLK----- 188 (249)
T ss_dssp CC----CCCCEEEEECH-HHHHHHHHHHHHHCSEEEEEEETT-EEEEEEEETTEEEEEEEEE--------TBEES-----
T ss_pred CC----CcceEEEEEEH-HHHHHHHHHHHHhCCEEEEEEECC-EEEEEEEecCcEEEEEEcC--------CCCcE-----
Confidence 52 12235777998 999999999999999999999755 6889998887666665532 00000
Q ss_pred ccchhhhhcCCCCeEEEEEechhHHhhcc-ccccCCcEEEEEEECCCeE-EE------EEEEEEe
Q 038444 240 AQTRSERAISRGDAQSVQVSVKHFSKSLQ-CHLAKPDCAFFGIAPQGAC-LT------VIFQFFI 296 (300)
Q Consensus 240 ~~~~~~~~~~~~~~~~V~Vd~k~l~~~L~-~~~~~p~~v~~~i~~~~~~-~~------~~l~y~i 296 (300)
.-+.++.++.+..+|-|..|.+ +-.+ .++|.+.+.++..+ ++ ..++||+
T Consensus 189 -------~~~~~~~~~~~fsl~yL~~~~K~a~~l-s~~V~i~~~~~~Pl~l~y~i~~~G~l~f~l 245 (249)
T 3fds_C 189 -------ELSIDTSASSSYSAEMFKDAVKGLRGF-SAPTMVSFGENLPMKIDVEAVSGGHMIFWI 245 (249)
T ss_dssp -------EEEESSCCEEEEEHHHHHHHHHTTTTC-CSCEEEEECTTCCEEEEEECTTSCEEEEEE
T ss_pred -------EEEcCCceEEEEEHHHHHHHHhhhccc-CCEEEEEecCCcCEEEEEEeCCCcEEEEEE
Confidence 0001135688899999999998 5544 45888888888766 32 3567776
No 13
>3k4x_A PCNA, proliferating cell nuclear antigen; DNA replication, DNA-binding; HET: DNA; 2.98A {Saccharomyces cerevisiae}
Probab=99.51 E-value=8.3e-12 Score=130.00 Aligned_cols=243 Identities=12% Similarity=0.183 Sum_probs=183.3
Q ss_pred eeEEecCchhhhHHHhHHHHHHhcCCEEEEEEecCeEEEEeeecCCCceEEEEEEccCCCcCeeEeeecCCCeEEEEEeh
Q 038444 3 FKAFLTDNGVNLLEKRFLPALDKMGKVCHLFLTREKAYFLHNLLSGEGIQCVAQFHKETLFDDYRISSQNEDCIAFAIDI 82 (300)
Q Consensus 3 FrA~i~d~~~~~l~~~iv~~i~kl~k~cvlrlt~~~l~~i~~~~~~~g~qvw~~l~~~~lF~ey~ieS~~~N~I~lev~~ 82 (300)
|+|++.+. .. ||+++.+++++-++|.+.++++.+++.. ..++.-.++-..++.+ .|++|+|+. .+.+-+++
T Consensus 8 f~a~~~~a--~~-~k~ii~ai~~lv~e~~~~~t~~Gi~l~a-mD~s~v~lv~l~l~~~-~F~~Y~~d~----~~~~Gvnl 78 (798)
T 3k4x_A 8 LEAKFEEA--SL-FKRIIDGFKDCVQLVNFQCKEDGIIAQA-VDDSRVLLVSLEIGVE-AFQEYRCDH----PVTLGMDL 78 (798)
T ss_dssp CEEEESCH--HH-HHHHHHHHTTTCSEEEEEEETTEEEEEE-ECSSSCCEEEEEEEGG-GSSEEECSS----CEEEEEEH
T ss_pred EEEEecch--HH-HHHHHHHHHHHhceEEEEEeCCeEEEEE-ECCCcEEEEEEEEChh-hCeEEecCC----CeEEEEEH
Confidence 99999977 34 6999999999999999999999999964 4466788999999998 999999986 68999999
Q ss_pred HHHHHHHhccccccccccccCCCCceEEEEEeecCCCCCCCCCceEEEEEECceeEEEEEeecCcccChhhhchhhhhhc
Q 038444 83 SLLQRAVRSGVSICSEIGAAGSAANRLQIKLVKKLPPNCTQAMPFLTFETKGYKSAVIQDVPISKPLSRAQGLELQTALD 162 (300)
Q Consensus 83 ~~L~raLrsa~~~~~~~~~~~~~a~~v~ikL~kk~~~~~~~~~P~L~~~~~g~~~~v~hdvPV~~vl~~~~~~~l~eP~~ 162 (300)
+.|.++||.+.+ .+.++|++...+ -.|.+.+++.+...+.+.-+ +.+.... +++..|.
T Consensus 79 ~~l~kiLk~~~~-----------~d~l~l~~~~~~--------~~l~i~~e~~~~~~~~~~~l-~l~d~~~-e~l~ip~- 136 (798)
T 3k4x_A 79 TSLSKILRCGNN-----------TDTLTLIADNTP--------DSIILLFEDTKKDRIAEYSL-KLMDIDA-DFLKIEE- 136 (798)
T ss_dssp HHHHHHHSSSCT-----------TSCEEEECCSSC--------SEEEEEEECSSSSEEEEEEE-ECBCCCC-CCCCCCC-
T ss_pred HHHHHHHhhcCC-----------CCEEEEEEcCCC--------CeEEEEEEeCCCceEEEEEE-EeeccCc-ccCCCCC-
Confidence 999999999986 678999986543 35778777665444444444 3454443 5566663
Q ss_pred ccCCCCCeEEEcCChhhHHHHHHhhhccCCEEEEEEEcCCeEEEEEeecceEEeEEeccccccccccCCCCccccccccc
Q 038444 163 MAQDIPPTLVQVPDLNQLQNFVHRMKHVGDLLNVSIYKYGDLHLQISTTLITLGAEFRKLLVIGEKAVAPSEDRNLSAQT 242 (300)
Q Consensus 163 ~~~~~p~~~i~lP~l~~l~~ivdR~k~~~~~v~i~an~~G~L~l~v~t~~v~v~t~~~~L~~~~~~~~~~~~~~~~~~~~ 242 (300)
...++.+.||+ ..|+.++..+..+|+.|+|+++. +.++|+.+++..+..+.+..=.. . ++++..
T Consensus 137 ---~e~~~~v~m~s-~~f~~~~~dl~~~sd~v~i~~~~-~~~~~s~~Gd~g~~~v~~~~~~~------~--~~~~~~--- 200 (798)
T 3k4x_A 137 ---LQYDSTLSLPS-SEFSKIVRDLSQLSDSINIMITK-ETIKFVADGDIGSGSVIIKPFVD------M--EHPETS--- 200 (798)
T ss_dssp ---SCCSEEEEEEH-HHHHHHHHHHTTTCSEEEEEEET-TEEEEEEECSSEEEEEEECCBCC------S--SCGGGC---
T ss_pred ---CceeEEEEEEH-HHHHHHHHHHHhhCCEEEEEEEC-CEEEEEEEecCcEEEEEEcCCCC------C--CCccce---
Confidence 23456888999 99999999999999999999986 47999999998888888764210 0 000000
Q ss_pred hhhhhcCCCCeEEEEEechhHHhhccccccCCcEEEEEEECCCeE-EE-----EEEEEEe
Q 038444 243 RSERAISRGDAQSVQVSVKHFSKSLQCHLAKPDCAFFGIAPQGAC-LT-----VIFQFFI 296 (300)
Q Consensus 243 ~~~~~~~~~~~~~V~Vd~k~l~~~L~~~~~~p~~v~~~i~~~~~~-~~-----~~l~y~i 296 (300)
......+-++.+..++-|..|.+.-.+ .++|.+.+.++..+ +. ..++||+
T Consensus 201 ---~~i~~~e~~~~~ysl~yL~~~~Ka~~l-s~~V~l~~~~~~PL~l~y~i~~G~l~f~l 256 (798)
T 3k4x_A 201 ---IKLEMDQPVDLTFGAKYLLDIIKGSSL-SDRVGIRLSSEAPALFQFDLKSGFLQFFL 256 (798)
T ss_dssp ---BEEEESSCEEEEEEHHHHHHHGGGGGT-CSEEEEEECSSSCEEEEEEETTEEEEEEE
T ss_pred ---EEEEeCCceeEEEEHHHHHHhhccccc-CCEEEEEeCCCCcEEEEEEECCeEEEEEE
Confidence 000111457889999999999986555 44889999988776 32 4566765
No 14
>3p91_A Proliferating cell nuclear antigen; DNA binding protein, DNA replication, processivity, sliding; 2.40A {Entamoeba histolytica}
Probab=99.51 E-value=1.6e-11 Score=112.10 Aligned_cols=239 Identities=10% Similarity=0.142 Sum_probs=173.9
Q ss_pred eeEEecCchhhhHHHhHHHHHHhcCCEEEEEEecCeEEEEeeecCCCceEEEEEEccCCCcCeeEeeecCCCeEEEEEeh
Q 038444 3 FKAFLTDNGVNLLEKRFLPALDKMGKVCHLFLTREKAYFLHNLLSGEGIQCVAQFHKETLFDDYRISSQNEDCIAFAIDI 82 (300)
Q Consensus 3 FrA~i~d~~~~~l~~~iv~~i~kl~k~cvlrlt~~~l~~i~~~~~~~g~qvw~~l~~~~lF~ey~ieS~~~N~I~lev~~ 82 (300)
|+|++.+. .. |++++.+++.+-..|.+.++++.+.+... ....-.++-..++.+ .|++|+|+. .+.+-+++
T Consensus 7 f~a~~~~a--~~-lk~ii~ai~~i~~~v~~~~~~~gl~~~A~-D~~rvalv~~~l~~~-~F~~y~~d~----~~~igi~l 77 (265)
T 3p91_A 7 FHAKFKEA--AL-FKRVVESLKSTIDKTNFDCSDAGIAVQCM-DNSHVSLVSLLIETD-AFDEFQCLK----PITLGINL 77 (265)
T ss_dssp EEEEESCH--HH-HHHHHHHHHTTCSEEEEEEETTEEEEEEE-CTTSSSEEEEEECGG-GEEEEECSS----CEEEEEEH
T ss_pred EEEEECch--HH-HHHHHHHHHHHhceEEEEEeCCeEEEEEE-CCCcEEEEEEEEChh-hceEEEeCC----CeEEEEEH
Confidence 99999977 34 59999999999999999999999999753 345677888889888 899999975 57889999
Q ss_pred HHHHHHHhccccccccccccCCCCceEEEEEeecCCCCCCCCCceEEEEEECcee-EEEEEeecCcccChhhhchhhhhh
Q 038444 83 SLLQRAVRSGVSICSEIGAAGSAANRLQIKLVKKLPPNCTQAMPFLTFETKGYKS-AVIQDVPISKPLSRAQGLELQTAL 161 (300)
Q Consensus 83 ~~L~raLrsa~~~~~~~~~~~~~a~~v~ikL~kk~~~~~~~~~P~L~~~~~g~~~-~v~hdvPV~~vl~~~~~~~l~eP~ 161 (300)
..|.++||.+.+ .+.++|++...+ --|.|.+.+... .+...++. +-.... ++..|.
T Consensus 78 ~~L~kiLk~~~~-----------~d~v~i~~~~~~--------~~l~~~~e~~~~~~i~~~lrL---id~~~~-~~~iP~ 134 (265)
T 3p91_A 78 THLSKILKALDN-----------DCGLILDVKKVD--------DAVLSITSEGTNKTMKFGLNL---VDIEAE-SVEIPE 134 (265)
T ss_dssp HHHHHHHTTSCT-----------TSEEEEEECSSS--------SEEEEEEEC--CCEEEEEEEC---CCCCCC-CCCCCC
T ss_pred HHHHHHHhhcCC-----------CCEEEEEEcCCC--------CeEEEEEEeCCCceEEEEEEe---cccCcc-cCCCCC
Confidence 999999999975 577999987543 357777775542 24444444 544442 233341
Q ss_pred cccCCCCCeEEEcCChhhHHHHHHhhhccC-CEEEEEEEcCCeEEEEEeecceEEeEEeccccccccccCCCCccccccc
Q 038444 162 DMAQDIPPTLVQVPDLNQLQNFVHRMKHVG-DLLNVSIYKYGDLHLQISTTLITLGAEFRKLLVIGEKAVAPSEDRNLSA 240 (300)
Q Consensus 162 ~~~~~~p~~~i~lP~l~~l~~ivdR~k~~~-~~v~i~an~~G~L~l~v~t~~v~v~t~~~~L~~~~~~~~~~~~~~~~~~ 240 (300)
...+..+.||+ ..|+.+++|+..+| +.|+|+++. +.++|+.+++..++...+..-... + +..
T Consensus 135 ----~e~~~~v~~~s-~~f~~~i~~~~~~s~d~V~i~~~~-~~v~~ss~gd~G~~~~~l~~~~~~------~--~~~--- 197 (265)
T 3p91_A 135 ----LQSDAIITLSS-AEFLKITKDFSALGDDSITIGCTK-NEVTLTTKGAMCETCMTLSALENV------D--SNG--- 197 (265)
T ss_dssp ----CCCSEEEEEEH-HHHHHHHHHHHHHCCSEEEEEECS-SEEEEEEECSSCEEEEEEEC---------------C---
T ss_pred ----CCccEEEEEEH-HHHHHHHHHHHhCCCCEEEEEEEC-CEEEEEEEecCceEEEEEecCCCC------C--Cce---
Confidence 12345788998 99999999999999 999999964 579999988887887777632100 0 000
Q ss_pred cchhhhhcCCCCeEEEEEechhHHhhccccccCCcEEEEEEECCCeE-EE-----EEEEEEe
Q 038444 241 QTRSERAISRGDAQSVQVSVKHFSKSLQCHLAKPDCAFFGIAPQGAC-LT-----VIFQFFI 296 (300)
Q Consensus 241 ~~~~~~~~~~~~~~~V~Vd~k~l~~~L~~~~~~p~~v~~~i~~~~~~-~~-----~~l~y~i 296 (300)
.....++.++.....|-|..++++-.+ .++|.+.+..+..+ +. ..++||+
T Consensus 198 -----~~~~~~e~~~~~F~~~YL~~~~Ka~~l-s~~V~i~~~~~~Pl~l~~~i~~g~~~f~l 253 (265)
T 3p91_A 198 -----LQIEHNKDVTASFALKQISEFAKSAPL-ADNVKLSLSGQAPLIMEFKGEACVLKFYL 253 (265)
T ss_dssp -----CEEEESSCEEEEEEHHHHHHHGGGGGG-CSEEEEEECSSSCEEEEEEETTEEEEEEE
T ss_pred -----EEEEcCCcEEEEEEHHHHHHhhccccc-CCEEEEEeCCCccEEEEEEECCEEEEEEE
Confidence 001112458899999999999986443 46888999888766 43 3577776
No 15
>3fds_D DNA polymerase sliding clamp C; protein-protein complex, DNA damage, DNA repair, DNA replica DNA-binding, DNA-directed DNA polymerase; HET: DNA 1PE PGE; 2.05A {Sulfolobus solfataricus} PDB: 2nti_E* 2io4_B* 2ix2_B* 2hik_B 2hii_B* 2izo_B*
Probab=99.51 E-value=1.6e-11 Score=110.71 Aligned_cols=233 Identities=13% Similarity=0.110 Sum_probs=172.9
Q ss_pred eeEEecCchhhhHHHhHHHHHHhcCCEEEEEEecCeEEEEeeecCCCceEEEEEEccCCCcCeeEeeecCCCeEEEEEeh
Q 038444 3 FKAFLTDNGVNLLEKRFLPALDKMGKVCHLFLTREKAYFLHNLLSGEGIQCVAQFHKETLFDDYRISSQNEDCIAFAIDI 82 (300)
Q Consensus 3 FrA~i~d~~~~~l~~~iv~~i~kl~k~cvlrlt~~~l~~i~~~~~~~g~qvw~~l~~~~lF~ey~ieS~~~N~I~lev~~ 82 (300)
|||++.+. .. |++++.+++++-..|.+.++++.+.+... ....-.++-..++.+ .|++|+|+. +.+.+-++.
T Consensus 2 ~~a~~~~a--~~-~k~i~~ai~~i~~~~~~~~~~~gl~~~A~-D~~rval~~~~l~~~-~F~~y~~~~---~~~i~gi~l 73 (245)
T 3fds_D 2 MKAKVIDA--VS-FSYILRTVGDFLSEANFIVTKEGIRVSGI-DPSRVVFLDIFLPSS-YFEGFEVSQ---EKEIIGFKL 73 (245)
T ss_dssp EEEEESCH--HH-HHHHHHHHHTTCSEEEEEEETTEEEEEEE-CTTSSEEEEEEEEGG-GEEEEEESS---SCEEEEEEH
T ss_pred EEEEeCcH--HH-HHHHHHHHHHHhceEEEEEcCCeEEEEEE-CCCCEEEEEEEEChH-hCEEEEeCC---ccEEEEEEH
Confidence 99999987 35 59999999999999999999999999763 345677888888877 899999975 344489999
Q ss_pred HHHHHHHhccccccccccccCCCCceEEEEEeecCCCCCCCCCceEEEEEECceeEEEEEeecCcccChhhhchhhhhhc
Q 038444 83 SLLQRAVRSGVSICSEIGAAGSAANRLQIKLVKKLPPNCTQAMPFLTFETKGYKSAVIQDVPISKPLSRAQGLELQTALD 162 (300)
Q Consensus 83 ~~L~raLrsa~~~~~~~~~~~~~a~~v~ikL~kk~~~~~~~~~P~L~~~~~g~~~~v~hdvPV~~vl~~~~~~~l~eP~~ 162 (300)
..|.+.||.+.+ .+.++|++ .+ .-|.|.+.+.. ++++=+ |++-... +++..|.
T Consensus 74 ~~l~kiL~~~~~-----------~d~v~i~~--~~--------~~l~~~~~~~~---~~~~~~-rLid~~~-~~~~iP~- 126 (245)
T 3fds_D 74 EDVNDILKRVLK-----------DDTLILSS--NE--------SKLTLTFDGEF---TRSFEL-PLIQVES-TQPPSVN- 126 (245)
T ss_dssp HHHHHHHTTCCT-----------TCEEEEEE--CS--------SEEEEEEESSS---EEEEEE-ECCCCCC-CCC-----
T ss_pred HHHHHHHHhcCC-----------CCEEEEEE--eC--------CEEEEEEecCc---eEEEEE-EeecCCc-ccCCCCC-
Confidence 999999999875 57789998 22 24788888664 345555 4565444 4555552
Q ss_pred ccCCCCCeEEEcCChhhHHHHHHhhhccCCEEEEEEEcCCeEEEEEeecceEEeEEeccccccccccCCCCccccccccc
Q 038444 163 MAQDIPPTLVQVPDLNQLQNFVHRMKHVGDLLNVSIYKYGDLHLQISTTLITLGAEFRKLLVIGEKAVAPSEDRNLSAQT 242 (300)
Q Consensus 163 ~~~~~p~~~i~lP~l~~l~~ivdR~k~~~~~v~i~an~~G~L~l~v~t~~v~v~t~~~~L~~~~~~~~~~~~~~~~~~~~ 242 (300)
...+..+.||+ ..|+..++|+..+|+.|+|+++.+ .++++.++|..+....+..=. + . .
T Consensus 127 ---~~~~~~v~~~s-~~f~~~i~~~~~~s~~V~i~~~~~-~l~~s~~gd~g~~~~~l~~~~--------~-~---~---- 185 (245)
T 3fds_D 127 ---LEFPFKAQLLT-ITFADIIDELSDLGEVLNIHSKEN-KLYFEVIGDLSTAKVELSTDN--------G-T---L---- 185 (245)
T ss_dssp ---CCCSEEEEEEH-HHHHHHHHHHTTTCSEEEEEEETT-EEEEEEECSSCEEEEEECTTS--------S-S---C----
T ss_pred ---cceEEEEEEEH-HHHHHHHHHHHhcCCEEEEEEeCC-EEEEEEEecCcEEEEEEcCCC--------C-c---e----
Confidence 13446788998 999999999999999999999764 699999888888877776400 0 0 0
Q ss_pred hhhhhcCCCCeEEEEEechhHHhhccccccCCcEEEEEEECCCeE-EE------EEEEEEe
Q 038444 243 RSERAISRGDAQSVQVSVKHFSKSLQCHLAKPDCAFFGIAPQGAC-LT------VIFQFFI 296 (300)
Q Consensus 243 ~~~~~~~~~~~~~V~Vd~k~l~~~L~~~~~~p~~v~~~i~~~~~~-~~------~~l~y~i 296 (300)
...+ ++.++.....|-|..+++.-.+ .++|.+.+.++..+ +. ..++||+
T Consensus 186 ---~~~~-~e~~~~~F~~~YL~~~~ka~~~-s~~V~i~~~~~~Pl~l~~~i~~~g~~~y~l 241 (245)
T 3fds_D 186 ---LEAS-GADVSSSYGMEYVANTTKMRRA-SDSMELYFGSQIPLKLRFKLPQEGYGDFYI 241 (245)
T ss_dssp ---SEEE-ECCCEEEEEHHHHHHGGGGGGT-CSEEEEEECTTSCEEEEEECSTTCEEEEEE
T ss_pred ---EEEe-cceEEEEEEHHHHHHHhhhccc-CCEEEEEecCCccEEEEEEeCCCeEEEEEE
Confidence 0001 2457889999999999985433 45888999888765 32 3567775
No 16
>3a1j_C Cell cycle checkpoint protein RAD1; DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A {Homo sapiens} PDB: 3g65_B 3ggr_C
Probab=99.44 E-value=7.2e-11 Score=107.56 Aligned_cols=231 Identities=10% Similarity=0.057 Sum_probs=167.4
Q ss_pred CeeeEEecCchhhhHHHhHHHHHHhcCCEEEEEEecCeEEEEeeecCCCceEEEEEEccCCCcCeeEeeecCCCeEEEEE
Q 038444 1 MKFKAFLTDNGVNLLEKRFLPALDKMGKVCHLFLTREKAYFLHNLLSGEGIQCVAQFHKETLFDDYRISSQNEDCIAFAI 80 (300)
Q Consensus 1 MkFrA~i~d~~~~~l~~~iv~~i~kl~k~cvlrlt~~~l~~i~~~~~~~g~qvw~~l~~~~lF~ey~ieS~~~N~I~lev 80 (300)
|.|+|++.+. .. |++++.+| ++.++|.+.++++.+.+..-. +.-.|+-..++.+ +|++|+++. +.+.|-+
T Consensus 3 ~~f~a~~~~a--~~-l~~il~ai-~l~~ea~~~~s~~Gi~l~a~D--s~v~~v~l~l~~~-~F~~Y~~~~---~~~~~gi 72 (263)
T 3a1j_C 3 YSLVASLDNV--RN-LSTILKAI-HFREHATCFATKNGIKVTVEN--AKCVQANAFIQAG-IFQEFKVQE---ESVTFRI 72 (263)
T ss_dssp CSEEEEESCT--HH-HHHHHHTT-CSSSEEEEEEETTEEEEEEEE--TTTEEEEEEEEGG-GSSEEEESS---SCEEEEE
T ss_pred eEEEEEeCCH--HH-HHHHHhhe-ecCcEEEEEEcCCeEEEEEEe--CCEEEEEEEECHH-HCceEEEcC---CCcEEEE
Confidence 7899999987 35 58999999 999999999999999997643 7889999999999 999999974 3489999
Q ss_pred ehHHHHHHHhccccccccccccCCCCceEEEEEeecCCCCCCCCCceEEEEEECceeEEEEEeecCcccChhhhchhhhh
Q 038444 81 DISLLQRAVRSGVSICSEIGAAGSAANRLQIKLVKKLPPNCTQAMPFLTFETKGYKSAVIQDVPISKPLSRAQGLELQTA 160 (300)
Q Consensus 81 ~~~~L~raLrsa~~~~~~~~~~~~~a~~v~ikL~kk~~~~~~~~~P~L~~~~~g~~~~v~hdvPV~~vl~~~~~~~l~eP 160 (300)
+++.|..+|+.+.+..++ .+.+.++|.-.+. .--|.+.+++..+.-..+++. +...+ +|
T Consensus 73 ~l~~l~k~L~~~~~~~~~-------~d~~~l~i~~~~~------~~~l~l~~e~~~~~~~~~l~~---~~~~~-----~~ 131 (263)
T 3a1j_C 73 NLTVLLDCLSIFGSSPMP-------GTLTALRMCYQGY------GYPLMLFLEEGGVVTVCKINT---QEPEE-----TL 131 (263)
T ss_dssp EHHHHHHHHTTTCSCCCT-------TCCCEEEEEECST------TCCEEEEEEETTEEEEEEECC---BCCCC-----CC
T ss_pred EhHHHHHHHHHhcCCcCC-------CCceEEEEEECCC------CCcEEEEEEeCCeEEEEEEEE---EcCCc-----cc
Confidence 999999999999862000 1557777654441 133555555433333444444 43333 13
Q ss_pred hcccCCCCCe-----EEEcCChhhHHHHHHhhhccCCEEEEEEEcCC-eEEEEEeecceEEeEEeccccccccccCCCCc
Q 038444 161 LDMAQDIPPT-----LVQVPDLNQLQNFVHRMKHVGDLLNVSIYKYG-DLHLQISTTLITLGAEFRKLLVIGEKAVAPSE 234 (300)
Q Consensus 161 ~~~~~~~p~~-----~i~lP~l~~l~~ivdR~k~~~~~v~i~an~~G-~L~l~v~t~~v~v~t~~~~L~~~~~~~~~~~~ 234 (300)
-. + -+. .+.||+ ..|+.++..+..+|+.|+|+++.++ .++|+.+.+..+..+.+..=. + .
T Consensus 132 d~---~-f~~~~~~~~v~m~s-~~l~~~~~dl~~~~d~v~i~~~~~~p~~~~~~~Gd~g~~~i~~~~~~--------~-~ 197 (263)
T 3a1j_C 132 DF---D-FCSTNVINKIILQS-EGLREAFSELDMTSEVLQITMSPDKPYFRLSTFGNAGSSHLDYPKDS--------D-L 197 (263)
T ss_dssp CC---C-CCTTTEEEEEEEEG-GGGHHHHHTSCTTSSEEEEEECSSSSSEEEEEEETTEEEEEEECTTC--------S-S
T ss_pred Cc---c-cCcccceEEEEEeh-HHHHHHHHHHhccCCeEEEEEEcCCCEEEEEEEcCCccEEEEEcCCC--------C-e
Confidence 11 1 122 677998 8999999999999999999997652 799999999888888886311 0 0
Q ss_pred cccccccchhhhhcCCCCeEEEEEechhHHhhccccccCCcEEEEEEECCCeE
Q 038444 235 DRNLSAQTRSERAISRGDAQSVQVSVKHFSKSLQCHLAKPDCAFFGIAPQGAC 287 (300)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~V~Vd~k~l~~~L~~~~~~p~~v~~~i~~~~~~ 287 (300)
.. .-..++.++.+-..+.|..+.++-.+ .++|.+.+.++..+
T Consensus 198 ~~----------~~~~~~~~~~~y~l~yL~~~~ka~~~-s~~v~i~~~~~~pL 239 (263)
T 3a1j_C 198 ME----------AFHCNQTQVNRYKISLLKPSTKALVL-SCKVSIRTDNRGFL 239 (263)
T ss_dssp EE----------EEEECSCEEEEEEHHHHTTHHHHHHH-CSEEEEEEETTCCE
T ss_pred EE----------EEEeCChhhcEEeHHHHHHHHhhhhh-cCEEEEEECCCeeE
Confidence 00 00011346788899999988876544 56888999988765
No 17
>3k4x_A PCNA, proliferating cell nuclear antigen; DNA replication, DNA-binding; HET: DNA; 2.98A {Saccharomyces cerevisiae}
Probab=99.39 E-value=1.4e-10 Score=120.69 Aligned_cols=245 Identities=11% Similarity=0.160 Sum_probs=181.2
Q ss_pred CeeeEEecCchhhhHHHhHHHHHHhcCCEEEEEEecCeEEEEeeecCCCceEEEEEEccCCCcCeeEeeecCCCeEEEEE
Q 038444 1 MKFKAFLTDNGVNLLEKRFLPALDKMGKVCHLFLTREKAYFLHNLLSGEGIQCVAQFHKETLFDDYRISSQNEDCIAFAI 80 (300)
Q Consensus 1 MkFrA~i~d~~~~~l~~~iv~~i~kl~k~cvlrlt~~~l~~i~~~~~~~g~qvw~~l~~~~lF~ey~ieS~~~N~I~lev 80 (300)
|.|+|++.+. .+||+++.++..+-..|.+.++++.+.+.... ...-.++-..++.+ .|++|+|+. .|.+-+
T Consensus 540 ~mfea~l~~~---~~lk~ii~ai~~iv~~~~~~~~~~Gi~~~a~D-~s~valv~~~L~~~-~F~~y~cd~----~i~iG~ 610 (798)
T 3k4x_A 540 GALEAKFEEA---SLFKRIIDGFKDCVQLVNFQCKEDGIIAQAVD-DSRVLLVSLEIGVE-AFQEYRCDH----PVTLGM 610 (798)
T ss_dssp --CEEEESSH---HHHHHHHHTTTTTCSEEEEEEETTEEEEEEEC-TTSSEEEEEEEEGG-GEEEEECSS----CEEEEE
T ss_pred ceEEEEcCch---HHHHHHHHHHHHHhCcEEEEEECCeEEEEEEC-CCcEEEEEEEeccc-cCceEEcCC----CeEEEE
Confidence 5799999977 34699999999999999999999999997633 34677888888887 999999986 488899
Q ss_pred ehHHHHHHHhccccccccccccCCCCceEEEEEeecCCCCCCCCCceEEEEEECceeEEEEEeecCcccChhhhchhhhh
Q 038444 81 DISLLQRAVRSGVSICSEIGAAGSAANRLQIKLVKKLPPNCTQAMPFLTFETKGYKSAVIQDVPISKPLSRAQGLELQTA 160 (300)
Q Consensus 81 ~~~~L~raLrsa~~~~~~~~~~~~~a~~v~ikL~kk~~~~~~~~~P~L~~~~~g~~~~v~hdvPV~~vl~~~~~~~l~eP 160 (300)
++..|.++||.+.+ .+.++|++...+ -.|.|.+++.+...+.++=+ |++...+ +++..|
T Consensus 611 nL~~L~kiLk~~~~-----------~d~v~l~~~d~~--------~~l~~~~e~~~~~~~~~f~l-kL~d~~~-~~~~iP 669 (798)
T 3k4x_A 611 DLTSLSKILRCGNN-----------TDTLTLIADNTP--------DSIILLFEDTKKDRIAEYSL-KLMDIDA-DFLKIE 669 (798)
T ss_dssp EHHHHHHHHHHSCS-----------SSEEEEECCSSC--------SEEEEEEECSSCCCEEEEEE-ECCCCCC-CCCCCC
T ss_pred EHHHHHHHHhccCC-----------CCEEEEEEcCCC--------CeEEEEEecCCCceEEEEEE-EeecCCC-CCCCCC
Confidence 99999999999986 688999987543 34777777655445566666 5565554 334434
Q ss_pred hcccCCCCCeEEEcCChhhHHHHHHhhhccCCEEEEEEEcCCeEEEEEeecceEEeEEeccccccccccCCCCccccccc
Q 038444 161 LDMAQDIPPTLVQVPDLNQLQNFVHRMKHVGDLLNVSIYKYGDLHLQISTTLITLGAEFRKLLVIGEKAVAPSEDRNLSA 240 (300)
Q Consensus 161 ~~~~~~~p~~~i~lP~l~~l~~ivdR~k~~~~~v~i~an~~G~L~l~v~t~~v~v~t~~~~L~~~~~~~~~~~~~~~~~~ 240 (300)
. ...+..+.||+ ..|+.+++|+..+|+.|+|+++.+ .++|+.++|..++...+..-.. ...+++.
T Consensus 670 ~----~e~~~~i~m~s-~~f~~~~~~l~~~sd~v~i~~~~~-~v~~s~~gd~G~~~~~l~~~~~------~~~~~~~--- 734 (798)
T 3k4x_A 670 E----LQYDSTLSLPS-SEFSKIVRDLSQLSDSINIMITKE-TIKFVADGDIGSGSVIIKPFVD------MEHPETS--- 734 (798)
T ss_dssp C----CCCSEEEEEEH-HHHHHHHHHHHTTCSEEEEEEETT-EEEEEEECSSCEEEEEECCBCC------SSCGGGC---
T ss_pred C----ccceEEEEEEH-HHHHHHHHHHHhcCCEEEEEEeCC-EEEEEEEcccceEEEEecCCCC------CCCcccc---
Confidence 2 12345888998 999999999999999999999864 7999999998888888864220 0000000
Q ss_pred cchhhhhcCCCCeEEEEEechhHHhhccccccCCcEEEEEEECCCeE-EE-----EEEEEEe
Q 038444 241 QTRSERAISRGDAQSVQVSVKHFSKSLQCHLAKPDCAFFGIAPQGAC-LT-----VIFQFFI 296 (300)
Q Consensus 241 ~~~~~~~~~~~~~~~V~Vd~k~l~~~L~~~~~~p~~v~~~i~~~~~~-~~-----~~l~y~i 296 (300)
.....++.++.+...|-|..|+++-.+ .++|.+.+.++..+ ++ ..++||+
T Consensus 735 -----~~i~~~e~~~~~f~l~YL~~~~Ka~~l-s~~V~i~~~~~~Pl~~~y~i~~G~i~fyl 790 (798)
T 3k4x_A 735 -----IKLEMDQPVDLTFGAKYLLDIIKGSSL-SDRVGIRLSSEAPALFQFDLKSGFLQFFL 790 (798)
T ss_dssp -----BEEEESSCEEEEEEHHHHHHHGGGGGT-CSEEEEEECSSSCEEEEEEETTEEEEEEE
T ss_pred -----EEEEcCCceEEEEEHHHHHHHhhhccC-CCeEEEEeCCCccEEEEEEEcceEEEEEE
Confidence 011112468899999999999997544 45888999888766 42 3567775
No 18
>3ifv_A PCNA; processivity factor, sliding clamp, halophilic, replication; 2.00A {Haloferax volcanii} PDB: 3hi8_A
Probab=99.35 E-value=1.4e-10 Score=104.57 Aligned_cols=229 Identities=10% Similarity=0.096 Sum_probs=153.5
Q ss_pred eeEEecCchhhhHHHhHHHHHHhcCCEEEEEEecCeEEEEeeecCCCceEEEEEEccCCCcCeeEeeecCCCeEEEEEeh
Q 038444 3 FKAFLTDNGVNLLEKRFLPALDKMGKVCHLFLTREKAYFLHNLLSGEGIQCVAQFHKETLFDDYRISSQNEDCIAFAIDI 82 (300)
Q Consensus 3 FrA~i~d~~~~~l~~~iv~~i~kl~k~cvlrlt~~~l~~i~~~~~~~g~qvw~~l~~~~lF~ey~ieS~~~N~I~lev~~ 82 (300)
|+|++ +. ..|++++.+++++-..|.+.++++.+.+... ....-.++-..++.+ .|++|+|+. .+ +-+++
T Consensus 2 f~a~~-~a---~~~k~i~~ai~~i~~~v~~~~~~~gl~~~A~-D~~rvalv~~~l~~~-~F~~y~~~~----~v-~g~~l 70 (247)
T 3ifv_A 2 FKAIV-SA---ATLRDALDSVSVLVDECKIRLNEESLSIRAV-DPANVGMVDLTLDAA-AFESYEAHG----GV-IGVNL 70 (247)
T ss_dssp CCEEE-CH---HHHHHHHHHHHTTCSSEEEC---CEEEEEEE-CTTSSEEEEEEEEGG-GSSBC---------C-EEECH
T ss_pred eEEEE-cH---HHHHHHHHHHHHHhcEEEEEEeCCeEEEEEE-CCccEEEEEEEEchh-cCeEEEccC----cE-EEEEH
Confidence 89998 55 4469999999999999999999999999763 345777888999977 899999975 57 99999
Q ss_pred HHHHHHHhccccccccccccCCCCceEEEEEeecCCCCCCCCCceEEEEEECceeEEEEEeecCcccChhhhc-hhhhhh
Q 038444 83 SLLQRAVRSGVSICSEIGAAGSAANRLQIKLVKKLPPNCTQAMPFLTFETKGYKSAVIQDVPISKPLSRAQGL-ELQTAL 161 (300)
Q Consensus 83 ~~L~raLrsa~~~~~~~~~~~~~a~~v~ikL~kk~~~~~~~~~P~L~~~~~g~~~~v~hdvPV~~vl~~~~~~-~l~eP~ 161 (300)
..|.+.|+.+.+ .+.++|++...+ .-|.|.+.+. ++=+ |++-....+ +..-|.
T Consensus 71 ~~l~kiL~~~~~-----------~d~v~i~~~~~~--------~~l~~~~~~~------~~~~-rLid~~~~~~~~~iP~ 124 (247)
T 3ifv_A 71 SRLEEVAGMAGA-----------GDLIHLTLDEET--------RKLNIRIDGL------SYTL-ALIDPDSIRQEPDIPD 124 (247)
T ss_dssp HHHHHHHTTC---------------CEEECC---------------EEEETTE------EEEC----CTTC----CCCCC
T ss_pred HHHHHHHhcCCC-----------CCEEEEEEcCCC--------CEEEEEEeCc------EEEE-EeecccccccCCCCCC
Confidence 999999999875 567888886543 3567777653 3444 345443321 222221
Q ss_pred cccCCCCCeEEEcCChhhHHHHHHhhhccCCEEEEEEEc-CCeEEEEEeecceEEeEEeccccccccccCCCCccccccc
Q 038444 162 DMAQDIPPTLVQVPDLNQLQNFVHRMKHVGDLLNVSIYK-YGDLHLQISTTLITLGAEFRKLLVIGEKAVAPSEDRNLSA 240 (300)
Q Consensus 162 ~~~~~~p~~~i~lP~l~~l~~ivdR~k~~~~~v~i~an~-~G~L~l~v~t~~v~v~t~~~~L~~~~~~~~~~~~~~~~~~ 240 (300)
...+..+.||+ ..|+.+++|+..+|+.|+|+++. ++.++++.+++..++...+.. ++..+
T Consensus 125 ----~e~~~~v~~~s-~~f~~~i~~~~~~sd~V~i~~~~~~~~~~~s~~gd~g~~~~~l~~--------~~~~~------ 185 (247)
T 3ifv_A 125 ----LDLAANIVLEG-THLDRGIKAADMVSDHIRLRVDGAEETFHIEAEGDTDDVDLSLPP--------ADLIS------ 185 (247)
T ss_dssp ----CCCSEEEEEEH-HHHHHHHHHHHHHCSEEEEEEETTTTEEEEEEECSSCEEEEEECG--------GGCSE------
T ss_pred ----CCceEEEEEEH-HHHHHHHHHHHhhCCEEEEEEECCCCEEEEEEEecceEEEEEECC--------CceEE------
Confidence 12235788998 99999999999999999999985 468999998887777777653 00000
Q ss_pred cchhhhhcCCCCeEEEEEechhHHhhccccccCCcEEEEEEECCCeE-EE-------EEEEEEe
Q 038444 241 QTRSERAISRGDAQSVQVSVKHFSKSLQCHLAKPDCAFFGIAPQGAC-LT-------VIFQFFI 296 (300)
Q Consensus 241 ~~~~~~~~~~~~~~~V~Vd~k~l~~~L~~~~~~p~~v~~~i~~~~~~-~~-------~~l~y~i 296 (300)
.. ++.++.....|-|..+++.-.+ .++|.+.+.++..+ +. ..++||+
T Consensus 186 -------~~-~e~~~~~F~~~YL~~~~Ka~~~-s~~V~i~~~~~~Pl~l~~~i~~~~g~~~~~l 240 (247)
T 3ifv_A 186 -------IE-AGAADSLFSLDYLKDMNKAIPT-DAEVTVELGEEFPVKLHYQIAEGMGTITYML 240 (247)
T ss_dssp -------EE-ECCCEEEEEHHHHHHHHHHSCT-TCEEEEEECBSSCEEEEEEEGGGTEEEEEEE
T ss_pred -------Ee-cCeEEEEEeHHHHHHhhhhccC-CCEEEEEecCCccEEEEEEEcCCcEEEEEEE
Confidence 00 1357889999999999985433 56888999887665 32 3566665
No 19
>3a1j_A Cell cycle checkpoint control protein RAD9A; DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A {Homo sapiens} PDB: 3ggr_A
Probab=99.33 E-value=7.9e-11 Score=107.46 Aligned_cols=248 Identities=12% Similarity=0.085 Sum_probs=166.3
Q ss_pred CeeeEEecCchhhhHHHhHHHHHHhcCCEEEEEEecCeEEEEeeecCCCceEEEEEEccCCCcCeeEeeecCCCeEEEEE
Q 038444 1 MKFKAFLTDNGVNLLEKRFLPALDKMGKVCHLFLTREKAYFLHNLLSGEGIQCVAQFHKETLFDDYRISSQNEDCIAFAI 80 (300)
Q Consensus 1 MkFrA~i~d~~~~~l~~~iv~~i~kl~k~cvlrlt~~~l~~i~~~~~~~g~qvw~~l~~~~lF~ey~ieS~~~N~I~lev 80 (300)
|+|+..-.+. .. |++++.++++++++|.+..+++.|.+-. ..++....+-..++.+ +|++|+++..+...+.+-+
T Consensus 1 M~~~i~~~~~--~~-~~k~i~als~l~~e~~~~~~~~gl~l~a-~d~S~va~v~l~~~~~-fF~~Y~~~~~~~~~~~~gv 75 (266)
T 3a1j_A 1 MKCLVTGGNV--KV-LGKAVHSLSRIGDELYLEPLEDGLSLRT-VNSSRSAYACFLFAPL-FFQQYQAATPGQDLLRCKI 75 (266)
T ss_dssp CEEEEETHHH--HH-HHHHHHHHHTTCSEEEEEEETTEEEEEE-ECTTSCEEEEEEECGG-GSSEEECCCSSSCCCCEEE
T ss_pred CEeEEcchhH--HH-HHHHHHHHHhhCCcEEEEEccCcEEEEE-EcCcccEEEEEEEchH-hhhheecCCCCCCcEEEEE
Confidence 8888776644 45 6999999999999999999999999964 4456777778888876 9999999854445788999
Q ss_pred ehHHHHHHHhccccccccccccCCCCceEEEEEeecCCCCCCCCCceEEEEEECc-eeEEEEEeecCcccChhhhchhhh
Q 038444 81 DISLLQRAVRSGVSICSEIGAAGSAANRLQIKLVKKLPPNCTQAMPFLTFETKGY-KSAVIQDVPISKPLSRAQGLELQT 159 (300)
Q Consensus 81 ~~~~L~raLrsa~~~~~~~~~~~~~a~~v~ikL~kk~~~~~~~~~P~L~~~~~g~-~~~v~hdvPV~~vl~~~~~~~l~e 159 (300)
+..+|..+||++.+... +-+.+.|++.... .-|.|.+.+. .+.-+|.+|.. -... ++...
T Consensus 76 ~~k~l~kilk~~~~~d~-------~vd~~~i~~~~~~--------~~l~~~~~~~~~~~k~~~l~l~-d~~~---~~~~~ 136 (266)
T 3a1j_A 76 LMKSFLSVFRSLAMLEK-------TVEKCCISLNGRS--------SRLVVQLHCKFGVRKTHNLSFQ-DCES---LQAVF 136 (266)
T ss_dssp EHHHHHHHHCCHHHHHH-------HEEEEEEECCTTC--------SEEEEEEEEGGGCEEEEEEECE-ECCC---CCCCC
T ss_pred EhhHHHHHhCCcccccc-------cceEEEEEEcCCC--------ceEEEEEEccCCceEEEEEEEE-cccc---cccee
Confidence 99999999999875100 0257888885432 4566666533 34567777773 3322 12222
Q ss_pred hhcccCCCCCeEEEcCChhhHHHHHHhhhccCCEEEEEEEcCCeEEEEEeecce------EEeEEeccccccccccCCCC
Q 038444 160 ALDMAQDIPPTLVQVPDLNQLQNFVHRMKHVGDLLNVSIYKYGDLHLQISTTLI------TLGAEFRKLLVIGEKAVAPS 233 (300)
Q Consensus 160 P~~~~~~~p~~~i~lP~l~~l~~ivdR~k~~~~~v~i~an~~G~L~l~v~t~~v------~v~t~~~~L~~~~~~~~~~~ 233 (300)
|. ..-...+.||+ +.|+.+++-+..+++.|+|.++..+.+.++..++.. .+.++..- + +.
T Consensus 137 ~~----~~~~~~i~~~s-~~~~~~~~~~~~~~d~v~i~~~~~~~v~~~s~~~~~~~~~~~~~~t~~~~--------~-~~ 202 (266)
T 3a1j_A 137 DP----ASCPHMLRAPA-RVLGEAVLPFSPALAEVTLGIGRGRRVILRSYHEEEADSTAKAMVTEMCL--------G-EE 202 (266)
T ss_dssp CG----GGCSEEEEEEH-HHHHHHHTTSCTTCCEEEEEECGGGCEEEEEECCC-CCCSCCCCEEEEEE--------C-GG
T ss_pred ch----hhCCceEEECh-HHHHHHHHhCCCChhhEEEEeCCCCEEEEEEcccCccccccccceEEEEE--------C-HH
Confidence 21 11234677888 999999999999999999999745667777744321 11121110 0 00
Q ss_pred ccccccccchhhhhcCCCCeEEEEEechhHHhhccccccCCcEEEEEEE-CCCeEE-E-----EEEEEEe
Q 038444 234 EDRNLSAQTRSERAISRGDAQSVQVSVKHFSKSLQCHLAKPDCAFFGIA-PQGACL-T-----VIFQFFI 296 (300)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~V~Vd~k~l~~~L~~~~~~p~~v~~~i~-~~~~~~-~-----~~l~y~i 296 (300)
+- ..-..++.++++..+|.|..++.-....+..+.+++. +++.++ . +.++||+
T Consensus 203 e~----------~~~~~~~~~~~tFslkyl~~~l~f~~~~~~~v~i~~~~~g~Pl~~~~~~~~~~~~f~L 262 (266)
T 3a1j_A 203 DF----------QQLQAQEGVAITFCLKEFRGLLSFAESANLNLSIHFDAPGRPAIFTIKDSLLDGHFVL 262 (266)
T ss_dssp GC----------SEEECCTTCEEEEEHHHHHHHHHHHHHTTCEEEEEECSTTSCEEEEEECSSEEEEEEE
T ss_pred Hh----------hheecCCCCEEEEEHHHHHHHHHHHHhcCCcEEEEECCCCccEEEEEeCCcEEEEEEE
Confidence 00 0011123578999999999977654445666888884 576664 1 4667765
No 20
>3g65_A Cell cycle checkpoint control protein RAD9A; PCNA, DNA binding clamp, DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein; 2.90A {Homo sapiens}
Probab=98.61 E-value=1.2e-06 Score=81.31 Aligned_cols=244 Identities=12% Similarity=0.082 Sum_probs=150.9
Q ss_pred CeeeEEecCchhhhHHHhHHHHHHhcCCEEEEEEecCeEEEEeeecCCCceEEEEEEccCCCcCeeEeeecCCCeEEEEE
Q 038444 1 MKFKAFLTDNGVNLLEKRFLPALDKMGKVCHLFLTREKAYFLHNLLSGEGIQCVAQFHKETLFDDYRISSQNEDCIAFAI 80 (300)
Q Consensus 1 MkFrA~i~d~~~~~l~~~iv~~i~kl~k~cvlrlt~~~l~~i~~~~~~~g~qvw~~l~~~~lF~ey~ieS~~~N~I~lev 80 (300)
|||...-. ++.. |.+.+++++|++.+..|-.+++.|.+-. ...+...-+-..++.. +|++|.+....+..+.+.+
T Consensus 1 M~~~i~g~--~~K~-f~kai~~LskigdEl~~e~~~dgL~Lra-vNsSrSA~~~~~f~~~-FF~~Y~~~~~~~~~~~c~i 75 (296)
T 3g65_A 1 MKCLVTGG--NVKV-LGKAVHSLSRIGDELYLEPLEDGLSLRT-VNSSRSAYACFLFAPL-FFQQYQAATPGQDLLRCKI 75 (296)
T ss_dssp CEEEEETH--HHHH-HHHHHHHHHTTCSEEEEEEETTEEEEEE-ECTTSCEEEEEEETTS-SCCCCCC-------CCEEE
T ss_pred CEEEEecc--cHHH-HHHHHHHHHhhCceEEEEEcCCeEEEEE-ECCcceEEEEEEeChH-HhhheecCCCCCccEEEEE
Confidence 66665555 5455 5899999999999999999999999963 3455666666667765 9999999865556889999
Q ss_pred ehHHHHHHHhccccccccccccCCCCceEEEEEeecCCCCCCCCCceEEEEEECce-eEEEEEeecCcccChhhhchhhh
Q 038444 81 DISLLQRAVRSGVSICSEIGAAGSAANRLQIKLVKKLPPNCTQAMPFLTFETKGYK-SAVIQDVPISKPLSRAQGLELQT 159 (300)
Q Consensus 81 ~~~~L~raLrsa~~~~~~~~~~~~~a~~v~ikL~kk~~~~~~~~~P~L~~~~~g~~-~~v~hdvPV~~vl~~~~~~~l~e 159 (300)
+..+|+.++|+..+... +-+.+.|.|... ..-|.+.+...+ ..=+|.+|.. ....-+. .+
T Consensus 76 ~~K~ll~vfr~~~~~d~-------~ve~c~i~l~~~--------~~rl~i~l~ck~gi~Kt~~l~~~-~~~~l~a-~~-- 136 (296)
T 3g65_A 76 LMKSFLSVFRSLAMLEK-------TVEKCCISLNGR--------SSRLVVQLHCKFGVRKTHNLSFQ-DCESLQA-VF-- 136 (296)
T ss_dssp EHHHHHTTTSSTTC-----------CCEEEEEECCC-----------EEEEEECGGGCEEEEEECCC-CCCCCCC-CC--
T ss_pred EhHHHHHHhcccccccc-------ceeEEEEEEeCC--------CCEEEEEEEeCCCeEEEEEEEeE-ecccccc-cc--
Confidence 99999999999864200 146688888643 245888876443 4667888883 3322111 11
Q ss_pred hhcccCCCCCeEEEcCChhhHHHHHHhhhccCCEEEEEEEcCCeEEEEEeecceEEeEEeccccccc--cccCCCCcccc
Q 038444 160 ALDMAQDIPPTLVQVPDLNQLQNFVHRMKHVGDLLNVSIYKYGDLHLQISTTLITLGAEFRKLLVIG--EKAVAPSEDRN 237 (300)
Q Consensus 160 P~~~~~~~p~~~i~lP~l~~l~~ivdR~k~~~~~v~i~an~~G~L~l~v~t~~v~v~t~~~~L~~~~--~~~~~~~~~~~ 237 (300)
|.. ..| ..+.+++ +.|+.+++-+....+.|+|.++.++.+.|+--++...= +...+- ...-.+.+=+
T Consensus 137 ~~~---~~~-n~~~i~~-~~l~e~l~~f~~~~eevtl~~~~~~~v~~~s~~e~~~d-----~~~~~~~Tel~i~~~ef~- 205 (296)
T 3g65_A 137 DPA---SCP-HMLRAPA-RVLGEAVLPFSPALAEVTLGIGRGRRVILRSYHEEEAD-----STAKAMVTEMCLGEEDFQ- 205 (296)
T ss_dssp CGG---GCS-CEEEEEH-HHHHHHSTTSCTTCCEEEEEEETTTEEEEEECCC----------CCCCCEEEEEECGGGCS-
T ss_pred Cch---hCc-EEEEEch-HHHHHHHHhCcCCcceEEEEECCCCeEEEEEecccccc-----ccCceEEEEEEEChhHhe-
Confidence 110 122 2444555 88999999999888999999986788888875543210 010000 0000000000
Q ss_pred ccccchhhhhcCCCCeEEEEEechhHHhhccccccCCcEEEEEEE-CCCeEE
Q 038444 238 LSAQTRSERAISRGDAQSVQVSVKHFSKSLQCHLAKPDCAFFGIA-PQGACL 288 (300)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~V~Vd~k~l~~~L~~~~~~p~~v~~~i~-~~~~~~ 288 (300)
.-.-++.+.++..+|.|..+++--...-..+-++.. +++.++
T Consensus 206 ---------~~~v~~~~~itf~lKefrail~~ae~~~~~i~i~f~~pG~Pl~ 248 (296)
T 3g65_A 206 ---------QLQAQEGVAITFCLKEFRGLLSFAESANLNLSIHFDAPGRPAI 248 (296)
T ss_dssp ---------EEECCTTCEEEEEHHHHHHHHHHHHHTTCEEEEECCSTTSCEE
T ss_pred ---------eEecCCCcEEEEEHHHHHHHHHHHHhcCCeEEEEECCCCCcEE
Confidence 001123478999999999999865444456677777 466553
No 21
>1dml_A DNA polymerase processivity factor; herpes simplex virus, DNA synthesis, sliding clamps, PCNA, processivity, DNA binding protein/transferase complex; HET: DNA; 2.70A {Human herpesvirus 1} SCOP: d.131.1.2 d.131.1.2
Probab=91.44 E-value=2.6 Score=38.68 Aligned_cols=169 Identities=12% Similarity=0.158 Sum_probs=104.7
Q ss_pred eEEecCchhhhHHHhHHHHHHhcC---CEEEEEEecCeEEEEeeecCCCceEEEEEEccCCCcCeeEeeecCCCeEEEEE
Q 038444 4 KAFLTDNGVNLLEKRFLPALDKMG---KVCHLFLTREKAYFLHNLLSGEGIQCVAQFHKETLFDDYRISSQNEDCIAFAI 80 (300)
Q Consensus 4 rA~i~d~~~~~l~~~iv~~i~kl~---k~cvlrlt~~~l~~i~~~~~~~g~qvw~~l~~~~lF~ey~ieS~~~N~I~lev 80 (300)
||.+... +| ..++++++-|+ |...|-|.++-|.+-.+. .|=||+.-|+.+ -|++|+-.. .-.+.|-.
T Consensus 32 ~~vL~g~---~L-~~~~~alaPl~~sLkds~LvFse~GllIh~sv---~gEQVyvPi~~~-~FS~Y~W~G--P~AvFLAl 101 (319)
T 1dml_A 32 QVVLQGA---EL-NGILQAFAPLRTSLLDSLLVMGDRGILIHNTI---FGEQVFLPLEHS-QFSRYRWRG--PTAAFLSL 101 (319)
T ss_dssp EEEEEHH---HH-HHHHHHHGGGTTTTSSCEEEEETTEEEEEEEE---TTEEEEEEEEGG-GSSEEECCS--SCEEEESE
T ss_pred EEEEech---hH-HHHHHHHHhHHHhhcccEEEEcCCceEEEeee---cceEEEEEcChH-hccccEecC--CceEEeEe
Confidence 6677755 44 58888888887 789999999998875433 567999999999 999999984 23566655
Q ss_pred --ehHHHHHHHhccccccccccccCCCCceEEEEEeecCCCCCCCCCceEEEEEECce--eEEEEEeec-----------
Q 038444 81 --DISLLQRAVRSGVSICSEIGAAGSAANRLQIKLVKKLPPNCTQAMPFLTFETKGYK--SAVIQDVPI----------- 145 (300)
Q Consensus 81 --~~~~L~raLrsa~~~~~~~~~~~~~a~~v~ikL~kk~~~~~~~~~P~L~~~~~g~~--~~v~hdvPV----------- 145 (300)
.-..|+-|+|.-.+. + .-...|++.|.. +.++|-|=.
T Consensus 102 vD~RrsLLDaFr~~k~~-----------~-----------------~~rV~F~i~G~~P~R~LtQ~v~~~~~d~~~~~~~ 153 (319)
T 1dml_A 102 VDQKRSLLSVFRANQYP-----------D-----------------LRRVELAITGQAPFRTLVQRIWTTTSDGEAVELA 153 (319)
T ss_dssp EETTEETTSTTSTTTCT-----------T-----------------EEEEEEEEESCTTSCEEEEEEEETTSSTTCSSSS
T ss_pred cccchhHHHHhccCCCC-----------C-----------------cEEEEEEEecCCCcceEEEEEEEecCCCCccchh
Confidence 345677777764431 1 113456665543 444444333
Q ss_pred -CcccChhhhc-hhhhhhcccCCCCCeEEEcCChhhHHHHHH-hhhccCCEEEEEEEcCCeEEEEEeecceEE
Q 038444 146 -SKPLSRAQGL-ELQTALDMAQDIPPTLVQVPDLNQLQNFVH-RMKHVGDLLNVSIYKYGDLHLQISTTLITL 215 (300)
Q Consensus 146 -~~vl~~~~~~-~l~eP~~~~~~~p~~~i~lP~l~~l~~ivd-R~k~~~~~v~i~an~~G~L~l~v~t~~v~v 215 (300)
..+++.+-|. .+--|. ..||+++.|-. .+|-+++. =.|.-+..++++-..+|.+...-.+.-+++
T Consensus 154 ~~tlvK~El~~ysvmlPq----~~PDvtl~LsK-~QL~Kil~~~~k~~~~~ttF~L~~~~~f~v~sg~~~vtf 221 (319)
T 1dml_A 154 SETLMKRELTSFVVLVPQ----GTPDVQLRLTR-PQLTKVLNATGADSATPTTFELGVNGKFSVFTTSTCVTF 221 (319)
T ss_dssp CCEEEEECCSSCEEEECC----SCCSEEEEECH-HHHHHHHHHSCCSTTSCEEEEECTTSEEEEECSSCEEEE
T ss_pred hHHHHHHhhhceEEEccC----CCCCEEEEEcH-HHHHHHHHHHhcCCCCceEEEEecCCcEEEecCCeEEEE
Confidence 1223222221 111232 55777777654 46777777 344445689999888777655444444444
No 22
>3a1j_C Cell cycle checkpoint protein RAD1; DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A {Homo sapiens} PDB: 3g65_B 3ggr_C
Probab=90.66 E-value=1.7 Score=38.66 Aligned_cols=101 Identities=14% Similarity=0.155 Sum_probs=76.9
Q ss_pred eEEecCchhhhHHHhHHHHHHhcCCEEEEEEecC--eEEEEeeecCCCceEEEEEEccC-CCcCeeEeeecCCCeEEEEE
Q 038444 4 KAFLTDNGVNLLEKRFLPALDKMGKVCHLFLTRE--KAYFLHNLLSGEGIQCVAQFHKE-TLFDDYRISSQNEDCIAFAI 80 (300)
Q Consensus 4 rA~i~d~~~~~l~~~iv~~i~kl~k~cvlrlt~~--~l~~i~~~~~~~g~qvw~~l~~~-~lF~ey~ieS~~~N~I~lev 80 (300)
++++... . |++++.-++.++..+.+..+|+ .+.|...+ +......+++.+ ..+.+|.++. .+....
T Consensus 143 ~v~m~s~---~-l~~~~~dl~~~~d~v~i~~~~~~p~~~~~~~G---d~g~~~i~~~~~~~~~~~~~~~~----~~~~~y 211 (263)
T 3a1j_C 143 KIILQSE---G-LREAFSELDMTSEVLQITMSPDKPYFRLSTFG---NAGSSHLDYPKDSDLMEAFHCNQ----TQVNRY 211 (263)
T ss_dssp EEEEEGG---G-GHHHHHTSCTTSSEEEEEECSSSSSEEEEEEE---TTEEEEEEECTTCSSEEEEEECS----CEEEEE
T ss_pred EEEEehH---H-HHHHHHHHhccCCeEEEEEEcCCCEEEEEEEc---CCccEEEEEcCCCCeEEEEEeCC----hhhcEE
Confidence 5555533 4 5899999999999999999999 98886543 444577788764 3777777754 678899
Q ss_pred ehHHHHHHHhccccccccccccCCCCceEEEEEeecCCCCCCCCCc-eEEEEEEC
Q 038444 81 DISLLQRAVRSGVSICSEIGAAGSAANRLQIKLVKKLPPNCTQAMP-FLTFETKG 134 (300)
Q Consensus 81 ~~~~L~raLrsa~~~~~~~~~~~~~a~~v~ikL~kk~~~~~~~~~P-~L~~~~~g 134 (300)
..+.|..+.|.... ++.++|++...+ | .|.+.+.+
T Consensus 212 ~l~yL~~~~ka~~~-----------s~~v~i~~~~~~--------pL~l~~~i~~ 247 (263)
T 3a1j_C 212 KISLLKPSTKALVL-----------SCKVSIRTDNRG--------FLSLQYMIRN 247 (263)
T ss_dssp EHHHHTTHHHHHHH-----------CSEEEEEEETTC--------CEEEEEEEEC
T ss_pred eHHHHHHHHhhhhh-----------cCEEEEEECCCe--------eEEEEEEEec
Confidence 99999998888765 678999999876 5 35566654
No 23
>3fds_C DNA polymerase sliding clamp B; protein-protein complex, DNA damage, DNA repair, DNA replica DNA-binding, DNA-directed DNA polymerase; HET: DNA 1PE PGE; 2.05A {Sulfolobus solfataricus} PDB: 2io4_A* 2nti_D* 2hii_A 2hik_A 2ix2_A* 2izo_C*
Probab=89.08 E-value=5.5 Score=35.12 Aligned_cols=85 Identities=13% Similarity=0.145 Sum_probs=61.7
Q ss_pred HHHhHHHHHHhcCCEEEEEEecCeEEEEeeecCCCceEEEEEEccCCCcCeeEeeecCCCeEEEEEehHHHHHHHh-ccc
Q 038444 15 LEKRFLPALDKMGKVCHLFLTREKAYFLHNLLSGEGIQCVAQFHKETLFDDYRISSQNEDCIAFAIDISLLQRAVR-SGV 93 (300)
Q Consensus 15 l~~~iv~~i~kl~k~cvlrlt~~~l~~i~~~~~~~g~qvw~~l~~~~lF~ey~ieS~~~N~I~lev~~~~L~raLr-sa~ 93 (300)
.|++++.-++.++..+.+..+++.+.|...+ ++...-.+++.+.=.-++.++ ..+...+.++.|....| ...
T Consensus 142 ~f~~~~~dl~~~sd~v~i~~~~~~~~f~~~g---d~~~~~~~~~~~~~l~~~~~~----~~~~~~fsl~yL~~~~K~a~~ 214 (249)
T 3fds_C 142 VLNVIAADVTLVGEEMRISTEEDKIKIEAGE---EGKRYVAFLMKDKPLKELSID----TSASSSYSAEMFKDAVKGLRG 214 (249)
T ss_dssp HHHHHHHHHHHHCSEEEEEEETTEEEEEEEE---TTEEEEEEEEETBEESEEEES----SCCEEEEEHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHhCCEEEEEEECCEEEEEEEe---cCcEEEEEEcCCCCcEEEEcC----CceEEEEEHHHHHHHHhhhcc
Confidence 3689999999999999999999999986533 333444455444311133333 36778899999999999 554
Q ss_pred cccccccccCCCCceEEEEEeecC
Q 038444 94 SICSEIGAAGSAANRLQIKLVKKL 117 (300)
Q Consensus 94 ~~~~~~~~~~~~a~~v~ikL~kk~ 117 (300)
. ++.|+|+|....
T Consensus 215 l-----------s~~V~i~~~~~~ 227 (249)
T 3fds_C 215 F-----------SAPTMVSFGENL 227 (249)
T ss_dssp C-----------CSCEEEEECTTC
T ss_pred c-----------CCEEEEEecCCc
Confidence 3 688999998775
No 24
>3lx2_A DNA polymerase sliding clamp 2; PCNA, DNA processivity factor, trimer, toroidal, DNA replica DNA-binding, DNA binding protein; HET: DNA; 2.40A {Thermococcus kodakarensis}
Probab=88.42 E-value=7.3 Score=34.27 Aligned_cols=93 Identities=18% Similarity=0.163 Sum_probs=67.1
Q ss_pred HHhHHHHHHhcCCEEEEEEecCeEEEEeeecCCCceEEEEEEccCC-CcCeeEeeecCCCeEEEEEehHHHHHHHhcccc
Q 038444 16 EKRFLPALDKMGKVCHLFLTREKAYFLHNLLSGEGIQCVAQFHKET-LFDDYRISSQNEDCIAFAIDISLLQRAVRSGVS 94 (300)
Q Consensus 16 ~~~iv~~i~kl~k~cvlrlt~~~l~~i~~~~~~~g~qvw~~l~~~~-lF~ey~ieS~~~N~I~lev~~~~L~raLrsa~~ 94 (300)
|++++.-++.+++.+.|.++++.+.|-..+ +...+--+++.+. -..++.+. ...+...++.+.|..++|....
T Consensus 141 f~~~i~~~~~~sd~V~i~~~~~~v~~ss~g---d~G~~~~~l~~~~~~~~~~~~~---~e~~~~~F~~~YL~~~~Ka~~~ 214 (259)
T 3lx2_A 141 LKRAVKAAKLVSDSIYFMATPEKLTFKAEG---NDSEVRTVLTMEDPGLLDLEHK---MTKAKSAYGVAYLEDILRSLAD 214 (259)
T ss_dssp HHHHHHHHHHHCSEEEEEECSSCEEEEEEC---SSCEEEEEECTTSTTEEEEEES---SSCEEEEEEHHHHHHHHSSSCT
T ss_pred HHHHHHHHHhcCCEEEEEEECCEEEEEEEe---cCcEEEEEEcCCCCceEEEEec---CceEEEEEEHHHHHhhhccccC
Confidence 579999999999999999999999886533 3445666665431 22233332 0368888999999999998864
Q ss_pred ccccccccCCCCceEEEEEeecCCCCCCCCCc-eEEEEEE
Q 038444 95 ICSEIGAAGSAANRLQIKLVKKLPPNCTQAMP-FLTFETK 133 (300)
Q Consensus 95 ~~~~~~~~~~~a~~v~ikL~kk~~~~~~~~~P-~L~~~~~ 133 (300)
++.++|++... .| .|.+.+.
T Consensus 215 -----------s~~V~l~~~~~--------~Pl~l~~~i~ 235 (259)
T 3lx2_A 215 -----------ADEVIIRFGFD--------IPLLLKYMVR 235 (259)
T ss_dssp -----------TSEEEEEECTT--------SCEEEEEEET
T ss_pred -----------CCeEEEEeCCC--------CCEEEEEEeC
Confidence 67899999755 36 4666664
No 25
>1u7b_A PCNA, cyclin, proliferating cell nuclear antigen; sliding clamp, DNA processing, FEN1, PIP- BOX, replication; 1.88A {Homo sapiens} SCOP: d.131.1.2 d.131.1.2 PDB: 1u76_A 1axc_A 1ul1_A 1vyj_A 1vym_A 1w60_A 2zvk_A* 2zvl_A* 2zvm_A* 3p87_A 3vkx_A*
Probab=87.82 E-value=9.3 Score=33.25 Aligned_cols=83 Identities=8% Similarity=0.091 Sum_probs=63.1
Q ss_pred HHhHHHHHHhcCCEEEEEEecCeEEEEeeecCCCceEEEEEEcc------CCCcCeeEeeecCCCeEEEEEehHHHHHHH
Q 038444 16 EKRFLPALDKMGKVCHLFLTREKAYFLHNLLSGEGIQCVAQFHK------ETLFDDYRISSQNEDCIAFAIDISLLQRAV 89 (300)
Q Consensus 16 ~~~iv~~i~kl~k~cvlrlt~~~l~~i~~~~~~~g~qvw~~l~~------~~lF~ey~ieS~~~N~I~lev~~~~L~raL 89 (300)
|++++.-++.++..+.|.++++.+.|-..+ +...+--+++. ..-+.+|.+. +.+...++...|..+|
T Consensus 144 l~~ai~r~~~~s~~v~i~~~~~~l~ls~~~---d~g~~~~~~~~~~~~~~~~~~~~~~~~----e~~~i~f~~~yL~~~l 216 (261)
T 1u7b_A 144 FARICRDLSHIGDAVVISCAKDGVKFSASG---ELGNGNIKLSQTSNVDKEEEAVTIEMN----EPVQLTFALRYLNFFT 216 (261)
T ss_dssp HHHHHHHHHTTCSEEEEEEETTEEEEEEEE---TTEEEEEEECCCC----CCSCCEEEES----SCEEEEEEHHHHHHHG
T ss_pred HHHHHHHHHhcCCEEEEEEECCEEEEEEEe---cCceEEEEEecCCCCCCCccceEEecC----CcEEEEEeHHHHHHHh
Confidence 579999999999999999999998886532 44566666653 2234455543 3688899999999999
Q ss_pred hccccccccccccCCCCceEEEEEeec
Q 038444 90 RSGVSICSEIGAAGSAANRLQIKLVKK 116 (300)
Q Consensus 90 rsa~~~~~~~~~~~~~a~~v~ikL~kk 116 (300)
|...- ++.++|++...
T Consensus 217 ka~~~-----------s~~V~i~~~~~ 232 (261)
T 1u7b_A 217 KATPL-----------SSTVTLSMSAD 232 (261)
T ss_dssp GGGGG-----------CSEEEEEECTT
T ss_pred CcccC-----------CCeEEEEECCC
Confidence 98864 57899999963
No 26
>3p91_A Proliferating cell nuclear antigen; DNA binding protein, DNA replication, processivity, sliding; 2.40A {Entamoeba histolytica}
Probab=87.35 E-value=11 Score=33.29 Aligned_cols=91 Identities=8% Similarity=0.089 Sum_probs=66.2
Q ss_pred HHhHHHHHHhcC-CEEEEEEecCeEEEEeeecCCCceEEEEEEccC----CCcCeeEeeecCCCeEEEEEehHHHHHHHh
Q 038444 16 EKRFLPALDKMG-KVCHLFLTREKAYFLHNLLSGEGIQCVAQFHKE----TLFDDYRISSQNEDCIAFAIDISLLQRAVR 90 (300)
Q Consensus 16 ~~~iv~~i~kl~-k~cvlrlt~~~l~~i~~~~~~~g~qvw~~l~~~----~lF~ey~ieS~~~N~I~lev~~~~L~raLr 90 (300)
|++++.-++.++ ..+.|.++++.+.|-..+ +...+-.+++.. ....++.+. ..+...++.+.|..++|
T Consensus 148 f~~~i~~~~~~s~d~V~i~~~~~~v~~ss~g---d~G~~~~~l~~~~~~~~~~~~~~~~----e~~~~~F~~~YL~~~~K 220 (265)
T 3p91_A 148 FLKITKDFSALGDDSITIGCTKNEVTLTTKG---AMCETCMTLSALENVDSNGLQIEHN----KDVTASFALKQISEFAK 220 (265)
T ss_dssp HHHHHHHHHHHCCSEEEEEECSSEEEEEEEC---SSCEEEEEEEC-------CCEEEES----SCEEEEEEHHHHHHHGG
T ss_pred HHHHHHHHHhCCCCEEEEEEECCEEEEEEEe---cCceEEEEEecCCCCCCceEEEEcC----CcEEEEEEHHHHHHhhc
Confidence 579999999999 889999999998886532 444555556542 122334332 36888999999999999
Q ss_pred ccccccccccccCCCCceEEEEEeecCCCCCCCCCce-EEEEE
Q 038444 91 SGVSICSEIGAAGSAANRLQIKLVKKLPPNCTQAMPF-LTFET 132 (300)
Q Consensus 91 sa~~~~~~~~~~~~~a~~v~ikL~kk~~~~~~~~~P~-L~~~~ 132 (300)
...- ++.++|++.... |+ |.|.+
T Consensus 221 a~~l-----------s~~V~i~~~~~~--------Pl~l~~~i 244 (265)
T 3p91_A 221 SAPL-----------ADNVKLSLSGQA--------PLIMEFKG 244 (265)
T ss_dssp GGGG-----------CSEEEEEECSSS--------CEEEEEEE
T ss_pred cccc-----------CCEEEEEeCCCc--------cEEEEEEE
Confidence 8865 688999999764 74 66777
No 27
>3fds_D DNA polymerase sliding clamp C; protein-protein complex, DNA damage, DNA repair, DNA replica DNA-binding, DNA-directed DNA polymerase; HET: DNA 1PE PGE; 2.05A {Sulfolobus solfataricus} PDB: 2nti_E* 2io4_B* 2ix2_B* 2hik_B 2hii_B* 2izo_B*
Probab=86.31 E-value=5.7 Score=34.62 Aligned_cols=83 Identities=8% Similarity=0.172 Sum_probs=62.5
Q ss_pred HHhHHHHHHhcCCEEEEEEecCeEEEEeeecCCCceEEEEEEccCC-CcCeeEeeecCCCeEEEEEehHHHHHHHhcccc
Q 038444 16 EKRFLPALDKMGKVCHLFLTREKAYFLHNLLSGEGIQCVAQFHKET-LFDDYRISSQNEDCIAFAIDISLLQRAVRSGVS 94 (300)
Q Consensus 16 ~~~iv~~i~kl~k~cvlrlt~~~l~~i~~~~~~~g~qvw~~l~~~~-lF~ey~ieS~~~N~I~lev~~~~L~raLrsa~~ 94 (300)
|++++.-++-+++.+.|.++++++.|...+ +...+--+++.+. .. ..++ +..+...++.+.|..++|....
T Consensus 140 f~~~i~~~~~~s~~V~i~~~~~~l~~s~~g---d~g~~~~~l~~~~~~~--~~~~---~e~~~~~F~~~YL~~~~ka~~~ 211 (245)
T 3fds_D 140 FADIIDELSDLGEVLNIHSKENKLYFEVIG---DLSTAKVELSTDNGTL--LEAS---GADVSSSYGMEYVANTTKMRRA 211 (245)
T ss_dssp HHHHHHHHTTTCSEEEEEEETTEEEEEEEC---SSCEEEEEECTTSSSC--SEEE---ECCCEEEEEHHHHHHGGGGGGT
T ss_pred HHHHHHHHHhcCCEEEEEEeCCEEEEEEEe---cCcEEEEEEcCCCCce--EEEe---cceEEEEEEHHHHHHHhhhccc
Confidence 579999999999999999999998886532 4445666676542 11 2233 3468888999999999998864
Q ss_pred ccccccccCCCCceEEEEEeecC
Q 038444 95 ICSEIGAAGSAANRLQIKLVKKL 117 (300)
Q Consensus 95 ~~~~~~~~~~~a~~v~ikL~kk~ 117 (300)
++.++|++....
T Consensus 212 -----------s~~V~i~~~~~~ 223 (245)
T 3fds_D 212 -----------SDSMELYFGSQI 223 (245)
T ss_dssp -----------CSEEEEEECTTS
T ss_pred -----------CCEEEEEecCCc
Confidence 578999999553
No 28
>1plq_A Proliferating cell nuclear antigen (PCNA); DNA-binding, nuclear protein, DNA replication, processivity; 2.30A {Saccharomyces cerevisiae} SCOP: d.131.1.2 d.131.1.2 PDB: 1plr_A 2od8_A* 1sxj_F* 3f1w_A 3v60_B 3v61_B 3v62_B* 3gpn_A 3gpm_A 3l0w_A 3l0x_A 3l10_A 3pge_B 3l0x_B
Probab=85.25 E-value=17 Score=31.57 Aligned_cols=83 Identities=10% Similarity=0.171 Sum_probs=60.9
Q ss_pred HHhHHHHHHhcCCEEEEEEecCeEEEEeeecCCCceEEEEEEcc------CCCcCeeEeeecCCCeEEEEEehHHHHHHH
Q 038444 16 EKRFLPALDKMGKVCHLFLTREKAYFLHNLLSGEGIQCVAQFHK------ETLFDDYRISSQNEDCIAFAIDISLLQRAV 89 (300)
Q Consensus 16 ~~~iv~~i~kl~k~cvlrlt~~~l~~i~~~~~~~g~qvw~~l~~------~~lF~ey~ieS~~~N~I~lev~~~~L~raL 89 (300)
|++++.-++.++..+.|.++++.+.|-..+ +...+--+++. ..-+-+|.+. ..+...++...|..+|
T Consensus 144 l~~av~r~~~~s~~v~i~~~~~~l~ls~~~---d~g~~~~~l~~~~~~~~~~~~~~~~~g----e~~~i~f~~~yL~~~l 216 (258)
T 1plq_A 144 FSKIVRDLSQLSDSINIMITKETIKFVADG---DIGSGSVIIKPFVDMEHPETSIKLEMD----QPVDLTFGAKYLLDII 216 (258)
T ss_dssp HHHHHHHHHTTCSEEEEEEETTEEEEEEEC---SSCEEEEEECCBCCTTCGGGCBEEEES----SCEEEEEEHHHHHHHG
T ss_pred HHHHHHHHHhcCCEEEEEEECCEEEEEEEc---cCceEEEEEecCCCCCCCccceEEecC----CcEEEEEEHHHHHHHh
Confidence 479999999999999999999998886533 33445555542 1233344442 3688899999999999
Q ss_pred hccccccccccccCCCCceEEEEEeec
Q 038444 90 RSGVSICSEIGAAGSAANRLQIKLVKK 116 (300)
Q Consensus 90 rsa~~~~~~~~~~~~~a~~v~ikL~kk 116 (300)
|...- ++.+.|+|...
T Consensus 217 ka~~~-----------s~~V~i~~~~~ 232 (258)
T 1plq_A 217 KGSSL-----------SDRVGIRLSSE 232 (258)
T ss_dssp GGGGT-----------CSEEEEEECSS
T ss_pred ccccC-----------CceEEEEECCC
Confidence 98864 57899999944
No 29
>2zvv_A PCNA 1, proliferating cellular nuclear antigen 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 2zvw_A
Probab=83.37 E-value=22 Score=31.30 Aligned_cols=83 Identities=10% Similarity=0.108 Sum_probs=61.3
Q ss_pred HHhHHHHHHhcCCEEEEEEecCeEEEEeeecCCCceEEEEEEccC------CCcCeeEeeecCCCeEEEEEehHHHHHHH
Q 038444 16 EKRFLPALDKMGKVCHLFLTREKAYFLHNLLSGEGIQCVAQFHKE------TLFDDYRISSQNEDCIAFAIDISLLQRAV 89 (300)
Q Consensus 16 ~~~iv~~i~kl~k~cvlrlt~~~l~~i~~~~~~~g~qvw~~l~~~------~lF~ey~ieS~~~N~I~lev~~~~L~raL 89 (300)
|++++.-++.++..+.|.++++.+.|-..+ +...+--+++.. .-+-+|.+. +.+...++...|..+|
T Consensus 164 l~~av~r~~~~sd~V~i~~~~~~l~lsa~g---d~g~~~~~l~~~~~~~~~~~~~~~~~g----e~~~i~fn~~YL~d~l 236 (276)
T 2zvv_A 164 FSRICKDLSSIGDTVVISVTKEGVKFSTAG---DIGTANIVLRQNTTVDKPEDAIVIEMK----EPVSLSFALRYMNSFT 236 (276)
T ss_dssp HHHHHHHHHTTCSEEEEEEETTEEEEEEEE---TTEEEEEEECCCSSCCSGGGCCEEEES----SCEEEEEEHHHHHHHG
T ss_pred HHHHHHHHHhhCCEEEEEEeCCEEEEEEEe---eccEEEEEEccCCCCCCccccEEEecC----CcEEEEEEHHHHHHHh
Confidence 479999999999999999999998886532 344555555531 123344443 3688899999999999
Q ss_pred hccccccccccccCCCCceEEEEEeec
Q 038444 90 RSGVSICSEIGAAGSAANRLQIKLVKK 116 (300)
Q Consensus 90 rsa~~~~~~~~~~~~~a~~v~ikL~kk 116 (300)
|...- ++.++|+|...
T Consensus 237 ka~~l-----------s~~V~i~l~~~ 252 (276)
T 2zvv_A 237 KATPL-----------SDTVTISLSSE 252 (276)
T ss_dssp GGGGG-----------CSEEEEEECTT
T ss_pred ccccC-----------CCEEEEEEcCC
Confidence 99874 57899999943
No 30
>1iz5_A Proliferating cell nuclear antigen; DNA, replication, processivity, sliding clamp, DNA binding protein; 1.80A {Pyrococcus furiosus} SCOP: d.131.1.2 d.131.1.2 PDB: 3a2f_B* 1iz4_A 1ge8_A 1isq_A 3lx1_A*
Probab=82.77 E-value=22 Score=30.55 Aligned_cols=82 Identities=15% Similarity=0.082 Sum_probs=60.4
Q ss_pred HHhHHHHHHhcCCEEEEEEecCeEEEEeeecCCCceEEEEEEccC-CCcCeeEeeecCCCeEEEEEehHHHHHHHhcccc
Q 038444 16 EKRFLPALDKMGKVCHLFLTREKAYFLHNLLSGEGIQCVAQFHKE-TLFDDYRISSQNEDCIAFAIDISLLQRAVRSGVS 94 (300)
Q Consensus 16 ~~~iv~~i~kl~k~cvlrlt~~~l~~i~~~~~~~g~qvw~~l~~~-~lF~ey~ieS~~~N~I~lev~~~~L~raLrsa~~ 94 (300)
|++.+.-++-++..+.|.++++.+.|-.+. +...+--+++.. .-+-+|.+. ..+...++...|..+||...-
T Consensus 141 l~~a~~r~~~ls~~V~l~~~~~~l~ls~~~---d~g~~~~~l~~~~~~~~~~~~g----e~~~i~Fn~~yL~d~lk~~~~ 213 (249)
T 1iz5_A 141 LKAAVKAASLVSDSIKFIARENEFIMKAEG---ETQEVEIKLTLEDEGLLDIEVQ----EETKSAYGVSYLSDMVKGLGK 213 (249)
T ss_dssp HHHHHHHHTTTCSEEEEEEETTEEEEEEEC---SSCEEEEEEETTTTSSSEEEES----SCEEEEEEHHHHHHHHTTSCT
T ss_pred HHHHHHHHHhcCCEEEEEEECCEEEEEEEe---cCceEEEEEccCCCccEEEEcC----CceEEEEeHHHHHHHhhhccC
Confidence 478999999999999999999998886433 333555555432 233445543 358889999999999999863
Q ss_pred ccccccccCCCCceEEEEEee
Q 038444 95 ICSEIGAAGSAANRLQIKLVK 115 (300)
Q Consensus 95 ~~~~~~~~~~~a~~v~ikL~k 115 (300)
++.+.|++..
T Consensus 214 -----------s~~V~l~~~~ 223 (249)
T 1iz5_A 214 -----------ADEVTIKFGN 223 (249)
T ss_dssp -----------TCEEEEEECT
T ss_pred -----------CCeEEEEEcC
Confidence 5789999994
No 31
>3ifv_A PCNA; processivity factor, sliding clamp, halophilic, replication; 2.00A {Haloferax volcanii} PDB: 3hi8_A
Probab=82.50 E-value=15 Score=31.95 Aligned_cols=90 Identities=10% Similarity=0.088 Sum_probs=66.2
Q ss_pred HHhHHHHHHhcCCEEEEEEe--cCeEEEEeeecCCCceEEEEEEccCCCcCeeEeeecCCCeEEEEEehHHHHHHHhccc
Q 038444 16 EKRFLPALDKMGKVCHLFLT--REKAYFLHNLLSGEGIQCVAQFHKETLFDDYRISSQNEDCIAFAIDISLLQRAVRSGV 93 (300)
Q Consensus 16 ~~~iv~~i~kl~k~cvlrlt--~~~l~~i~~~~~~~g~qvw~~l~~~~lF~ey~ieS~~~N~I~lev~~~~L~raLrsa~ 93 (300)
|++++.-++.+++.+.|.++ ++.+.|...+ +...+--+++.+. .-+| + ...+...++++.|..++|...
T Consensus 138 f~~~i~~~~~~sd~V~i~~~~~~~~~~~s~~g---d~g~~~~~l~~~~-~~~~--~---~e~~~~~F~~~YL~~~~Ka~~ 208 (247)
T 3ifv_A 138 LDRGIKAADMVSDHIRLRVDGAEETFHIEAEG---DTDDVDLSLPPAD-LISI--E---AGAADSLFSLDYLKDMNKAIP 208 (247)
T ss_dssp HHHHHHHHHHHCSEEEEEEETTTTEEEEEEEC---SSCEEEEEECGGG-CSEE--E---ECCCEEEEEHHHHHHHHHHSC
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCEEEEEEEe---cceEEEEEECCCc-eEEE--e---cCeEEEEEeHHHHHHhhhhcc
Confidence 57999999999999999999 6677775432 3345566676552 2233 3 346788899999999999886
Q ss_pred cccccccccCCCCceEEEEEeecCCCCCCCCCce-EEEEEE
Q 038444 94 SICSEIGAAGSAANRLQIKLVKKLPPNCTQAMPF-LTFETK 133 (300)
Q Consensus 94 ~~~~~~~~~~~~a~~v~ikL~kk~~~~~~~~~P~-L~~~~~ 133 (300)
. ++.++|++.... |+ |.+.+.
T Consensus 209 ~-----------s~~V~i~~~~~~--------Pl~l~~~i~ 230 (247)
T 3ifv_A 209 T-----------DAEVTVELGEEF--------PVKLHYQIA 230 (247)
T ss_dssp T-----------TCEEEEEECBSS--------CEEEEEEEG
T ss_pred C-----------CCEEEEEecCCc--------cEEEEEEEc
Confidence 5 678999999664 74 666665
No 32
>3aiz_A DNA polymerase sliding clamp B; protein-protein complex, replication; HET: DNA; 2.80A {Sulfolobus tokodaii} PDB: 3aix_B*
Probab=81.30 E-value=16 Score=31.46 Aligned_cols=82 Identities=9% Similarity=0.118 Sum_probs=59.8
Q ss_pred HHhHHHHHHhcCCEEEEEEecCeEEEEeeecCCCceEEEEEEccCCCcCeeEeeecCCCeEEEEEehHHHHHHHhccccc
Q 038444 16 EKRFLPALDKMGKVCHLFLTREKAYFLHNLLSGEGIQCVAQFHKETLFDDYRISSQNEDCIAFAIDISLLQRAVRSGVSI 95 (300)
Q Consensus 16 ~~~iv~~i~kl~k~cvlrlt~~~l~~i~~~~~~~g~qvw~~l~~~~lF~ey~ieS~~~N~I~lev~~~~L~raLrsa~~~ 95 (300)
|++.+.-++-++..+.|.++++.+.|-... +...+--+++...=+-+|.+ +..+...++...|..+||...-
T Consensus 143 l~~av~r~~~~s~~V~i~~~~~~l~ls~~~---d~g~~~~~~~~~~~~~~~~~----ge~~~i~fn~~yL~d~lk~~~~- 214 (248)
T 3aiz_A 143 LKDIARDLSLVGEEVEISADENTVTLSTEE---AGRTYKSLLKQDKPLKSLNV----ESPSKAVYSIEVLKDVFKVTSI- 214 (248)
T ss_dssp HHHHHHHHTTSCSEEEEEECSSEEEEEEEE---TTEEEEEEEEETBEESEEEE----SSCEEEEEEHHHHHHHHHHGGG-
T ss_pred HHHHHHHHHhcCCEEEEEEeCCEEEEEEEc---cCceEEEEEcCCCcceEEec----CCceEEEEEHHHHHHHhhhccC-
Confidence 479999999999999999999998886542 34455555543211123443 2368889999999999999864
Q ss_pred cccccccCCCCceEEEEEee
Q 038444 96 CSEIGAAGSAANRLQIKLVK 115 (300)
Q Consensus 96 ~~~~~~~~~~a~~v~ikL~k 115 (300)
++.+.|++..
T Consensus 215 ----------s~~V~l~~~~ 224 (248)
T 3aiz_A 215 ----------SQNVTVGFGN 224 (248)
T ss_dssp ----------CSSEEEEEET
T ss_pred ----------CCeEEEEEcC
Confidence 5779999994
No 33
>1ud9_A DNA polymerase sliding clamp A; DNA-binding, DNA replication, DNA binding protein; HET: DNA; 1.68A {Sulfolobus tokodaii} SCOP: d.131.1.2 d.131.1.2
Probab=73.66 E-value=36 Score=29.13 Aligned_cols=81 Identities=12% Similarity=0.121 Sum_probs=57.1
Q ss_pred HHhHHHHHHhcCCEEEEEEecCeEEEEeeecCCCceEEEEEEccC-CCcCeeEeeecCCCeEEEEEehHHHHHHHhcccc
Q 038444 16 EKRFLPALDKMGKVCHLFLTREKAYFLHNLLSGEGIQCVAQFHKE-TLFDDYRISSQNEDCIAFAIDISLLQRAVRSGVS 94 (300)
Q Consensus 16 ~~~iv~~i~kl~k~cvlrlt~~~l~~i~~~~~~~g~qvw~~l~~~-~lF~ey~ieS~~~N~I~lev~~~~L~raLrsa~~ 94 (300)
|++.+.-++-++..+.|.++++.+.|-.+. +... --+++.. .-+-+|.+ ++.+...++...|..+||...-
T Consensus 139 l~~a~~r~~~~s~~V~l~~~~~~l~ls~~~---d~g~-~~~l~~~~~~~~~~~~----ge~~~i~Fn~~yL~d~lk~~~~ 210 (245)
T 1ud9_A 139 LKNAIGEIAEVADTLLISGNEEKVVVKGEG---ENKV-EVEFSKDTGSLADIEF----NKESSSAYDVEYLNDIISLTKL 210 (245)
T ss_dssp HHHHHHHHHHHCSEEEEEECSSEEEEEESS---SSCC-CEEEEGGGTCEEEEEE----SSCEEEEEEHHHHHHTGGGGGG
T ss_pred HHHHHHHHHhcCCEEEEEEECCEEEEEEEc---cCce-EEEEecCCCccEEEEe----CCceeEEEEHHHHHHHhhhccc
Confidence 479999999999999999999998886433 2222 3333321 11223333 2368889999999999999864
Q ss_pred ccccccccCCCCceEEEEEee
Q 038444 95 ICSEIGAAGSAANRLQIKLVK 115 (300)
Q Consensus 95 ~~~~~~~~~~~a~~v~ikL~k 115 (300)
++.+.|++..
T Consensus 211 -----------s~~V~l~~~~ 220 (245)
T 1ud9_A 211 -----------SDYVKVAFAD 220 (245)
T ss_dssp -----------CSEEEEEECT
T ss_pred -----------CCEEEEEEcC
Confidence 5789999994
No 34
>2ijx_A DNA polymerase sliding clamp A; PCNA3 subunit, protein-protein interaction, PCNA123 heterotr binding protein; HET: DNA; 1.90A {Sulfolobus solfataricus} PDB: 2nti_F* 2hii_C 2hik_C 2ix2_C*
Probab=72.69 E-value=38 Score=28.94 Aligned_cols=81 Identities=10% Similarity=0.045 Sum_probs=57.5
Q ss_pred HHhHHHHHHhcCCEEEEEEecCeEEEEeeecCCCceEEEEEEccC-CCcCeeEeeecCCCeEEEEEehHHHHHHHhcccc
Q 038444 16 EKRFLPALDKMGKVCHLFLTREKAYFLHNLLSGEGIQCVAQFHKE-TLFDDYRISSQNEDCIAFAIDISLLQRAVRSGVS 94 (300)
Q Consensus 16 ~~~iv~~i~kl~k~cvlrlt~~~l~~i~~~~~~~g~qvw~~l~~~-~lF~ey~ieS~~~N~I~lev~~~~L~raLrsa~~ 94 (300)
|++.+.-++-++..+.|.++++.+.|-.+. +... --+++.. .-+-+|.+. ..+...++...|..+||...-
T Consensus 139 l~~a~~r~~~~s~~V~l~~~~~~l~ls~~~---d~g~-~~~l~~~~~~~~~~~~g----e~~~i~Fn~~yL~d~lk~~~~ 210 (244)
T 2ijx_A 139 FKSAISEVSTVTDNVVVEGHEDRILIKAEG---ESEV-EVEFSKDTGGLQDLEFS----KESKNSYSAEYLDDVLSLTKL 210 (244)
T ss_dssp HHHHHHHHTTTCSEEEEEEETTEEEEEETT---CTTS-EEEEETTTTCEEEEEES----SCEEEEEEHHHHHHTGGGGGG
T ss_pred HHHHHHHHHhcCCEEEEEEECCEEEEEEEe---cCce-EEEEeCCCCccEEEEcC----CceEEEEEHHHHHHHhhhccC
Confidence 479999999999999999999998886432 2223 3344321 122234332 358889999999999999874
Q ss_pred ccccccccCCCCceEEEEEee
Q 038444 95 ICSEIGAAGSAANRLQIKLVK 115 (300)
Q Consensus 95 ~~~~~~~~~~~a~~v~ikL~k 115 (300)
++.+.|++..
T Consensus 211 -----------s~~V~l~~~~ 220 (244)
T 2ijx_A 211 -----------SDYVKISFGN 220 (244)
T ss_dssp -----------CSEEEEEEET
T ss_pred -----------CCEEEEEEcC
Confidence 5789999994
No 35
>1rwz_A DNA polymerase sliding clamp; torus, processivity factor, replication; HET: DNA; 1.80A {Archaeoglobus fulgidus} SCOP: d.131.1.2 d.131.1.2 PDB: 1rxm_A* 1rxz_A* 3p83_A*
Probab=71.69 E-value=47 Score=28.38 Aligned_cols=80 Identities=16% Similarity=0.096 Sum_probs=57.0
Q ss_pred HHhHHHHHHhcCCEEEEEEecCeEEEEeeecCCCceEEEEEEccC-CCcCeeEeeecCCCeEEEEEehHHHHHHHhcccc
Q 038444 16 EKRFLPALDKMGKVCHLFLTREKAYFLHNLLSGEGIQCVAQFHKE-TLFDDYRISSQNEDCIAFAIDISLLQRAVRSGVS 94 (300)
Q Consensus 16 ~~~iv~~i~kl~k~cvlrlt~~~l~~i~~~~~~~g~qvw~~l~~~-~lF~ey~ieS~~~N~I~lev~~~~L~raLrsa~~ 94 (300)
|++.+.-++-++..+.|.++++.+.|-.+. +... ++...+ ...-+|.. +++...++...|..+||...-
T Consensus 138 l~~av~r~~~ls~~V~l~~~~~~l~ls~~~---d~g~--~~~~~~~e~~~~~~g-----~~~~i~Fn~~yL~d~lk~~~~ 207 (245)
T 1rwz_A 138 FKKAIAAADKISDQVIFRSDKEGFRIEAKG---DVDS--IVFHMTETELIEFNG-----GEARSMFSVDYLKEFCKVAGS 207 (245)
T ss_dssp HHHHHHHHHTTCSEEEEEEETTEEEEEEEC---SSCE--EEEEECGGGSSEECC-----CCEEEEEEHHHHHHHGGGCCT
T ss_pred HHHHHHHHHhcCCEEEEEEECCEEEEEEEc---cCcE--EEEecCCCccEEEEE-----eeEEEEEeHHHHHHHhhhccC
Confidence 479999999999999999999998886433 2223 333211 23333332 238889999999999999863
Q ss_pred ccccccccCCCCceEEEEEeec
Q 038444 95 ICSEIGAAGSAANRLQIKLVKK 116 (300)
Q Consensus 95 ~~~~~~~~~~~a~~v~ikL~kk 116 (300)
++.+.|++...
T Consensus 208 -----------s~~V~l~~~~~ 218 (245)
T 1rwz_A 208 -----------GDLLTIHLGTN 218 (245)
T ss_dssp -----------TCEEEEEECSS
T ss_pred -----------CCeEEEEECCC
Confidence 57899999953
No 36
>3aiz_C DNA polymerase sliding clamp C; protein-protein complex, replication; HET: DNA; 2.80A {Sulfolobus tokodaii} PDB: 3aix_A*
Probab=71.61 E-value=43 Score=28.59 Aligned_cols=81 Identities=7% Similarity=0.056 Sum_probs=60.1
Q ss_pred HHhHHHHHHhc-CCEEEEEEecCeEEEEeeecCCCceEEEEEEccC-CCcCeeEeeecCCCeEEEEEehHHHHHHHhccc
Q 038444 16 EKRFLPALDKM-GKVCHLFLTREKAYFLHNLLSGEGIQCVAQFHKE-TLFDDYRISSQNEDCIAFAIDISLLQRAVRSGV 93 (300)
Q Consensus 16 ~~~iv~~i~kl-~k~cvlrlt~~~l~~i~~~~~~~g~qvw~~l~~~-~lF~ey~ieS~~~N~I~lev~~~~L~raLrsa~ 93 (300)
|++.+.-++-+ +..+.|.++++.+.|-.+. +...+--+++.. .-+-+|.. ..+...++...|..+||...
T Consensus 139 l~~a~~r~~~l~s~~V~l~~~~~~l~ls~~~---d~g~~~~~l~~~~~~~~~~~g-----e~~~i~Fn~~yL~d~lk~~~ 210 (246)
T 3aiz_C 139 FTDIIDEIEDIGGDSITFKAEGGKLYLSANS---DMGSSTIELSTENGGLLESEG-----GDAESVYGLEYVVNTSKMRK 210 (246)
T ss_dssp HHHHHHHHHHHCCSEEEEEEETTEEEEEEEC---SSCEEEEEECTTTTSCSEEEE-----CCEEEEEEHHHHHTTGGGTT
T ss_pred HHHHHHHHhhCCCCEEEEEEECCEEEEEEEc---CCceEEEEEecCCCccEEEEE-----eeEEEEEEHHHHHHHhhhcc
Confidence 47999999999 9999999999998886432 334555555432 23345644 25788899999999999986
Q ss_pred cccccccccCCCCceEEEEEee
Q 038444 94 SICSEIGAAGSAANRLQIKLVK 115 (300)
Q Consensus 94 ~~~~~~~~~~~~a~~v~ikL~k 115 (300)
- ++.+.|++..
T Consensus 211 ~-----------s~~V~l~~~~ 221 (246)
T 3aiz_C 211 P-----------SDTVEIAFGS 221 (246)
T ss_dssp T-----------CSEEEEEEET
T ss_pred C-----------CCeEEEEecC
Confidence 3 5789999994
No 37
>3a1j_A Cell cycle checkpoint control protein RAD9A; DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A {Homo sapiens} PDB: 3ggr_A
Probab=55.47 E-value=63 Score=28.24 Aligned_cols=97 Identities=10% Similarity=0.040 Sum_probs=66.3
Q ss_pred hHHHhHHHHHHhcCCEEEEEEe-cCeEEEEeeecC---C--CceEEEEEEccCCCcCeeEeeecCCCeEEEEEehHHHHH
Q 038444 14 LLEKRFLPALDKMGKVCHLFLT-REKAYFLHNLLS---G--EGIQCVAQFHKETLFDDYRISSQNEDCIAFAIDISLLQR 87 (300)
Q Consensus 14 ~l~~~iv~~i~kl~k~cvlrlt-~~~l~~i~~~~~---~--~g~qvw~~l~~~~lF~ey~ieS~~~N~I~lev~~~~L~r 87 (300)
..|++++..+...+..+.|..+ ++++.|-..... + ..+..-..+..+ =|.+|.++. ...+.+.+..|..
T Consensus 150 ~~~~~~~~~~~~~~d~v~i~~~~~~~v~~~s~~~~~~~~~~~~~~t~~~~~~~-e~~~~~~~~----~~~~tFslkyl~~ 224 (266)
T 3a1j_A 150 RVLGEAVLPFSPALAEVTLGIGRGRRVILRSYHEEEADSTAKAMVTEMCLGEE-DFQQLQAQE----GVAITFCLKEFRG 224 (266)
T ss_dssp HHHHHHHTTSCTTCCEEEEEECGGGCEEEEEECCC-CCCSCCCCEEEEEECGG-GCSEEECCT----TCEEEEEHHHHHH
T ss_pred HHHHHHHHhCCCChhhEEEEeCCCCEEEEEEcccCccccccccceEEEEECHH-HhhheecCC----CCEEEEEHHHHHH
Confidence 4468999999999999999999 999999763321 1 222222333334 588898753 4556678888888
Q ss_pred HHhccccccccccccCCCCceEEEEEeecCCCCCCCCCceEEEEEE
Q 038444 88 AVRSGVSICSEIGAAGSAANRLQIKLVKKLPPNCTQAMPFLTFETK 133 (300)
Q Consensus 88 aLrsa~~~~~~~~~~~~~a~~v~ikL~kk~~~~~~~~~P~L~~~~~ 133 (300)
.+.-+... ...++|.+...+ .|++ |++.
T Consensus 225 ~l~f~~~~----------~~~v~i~~~~~g-------~Pl~-~~~~ 252 (266)
T 3a1j_A 225 LLSFAESA----------NLNLSIHFDAPG-------RPAI-FTIK 252 (266)
T ss_dssp HHHHHHHT----------TCEEEEEECSTT-------SCEE-EEEE
T ss_pred HHHHHHhc----------CCcEEEEECCCC-------ccEE-EEEe
Confidence 77776542 455888888555 6865 4444
No 38
>1vpk_A DNA polymerase III, beta subunit; TM0262, structural genomic center for structural genomics, JCSG, protein structure INI PSI, transferase; HET: DNA; 2.00A {Thermotoga maritima} SCOP: d.131.1.1 d.131.1.1 d.131.1.1
Probab=50.76 E-value=68 Score=29.56 Aligned_cols=140 Identities=10% Similarity=0.175 Sum_probs=84.7
Q ss_pred hHHHHHHhcCC-EEEEEEecCeEEEEeeecCCCceEEEEEEccCCCcCeeEeeecCCCeEEEEEehHHHHHHHhcccccc
Q 038444 18 RFLPALDKMGK-VCHLFLTREKAYFLHNLLSGEGIQCVAQFHKETLFDDYRISSQNEDCIAFAIDISLLQRAVRSGVSIC 96 (300)
Q Consensus 18 ~iv~~i~kl~k-~cvlrlt~~~l~~i~~~~~~~g~qvw~~l~~~~lF~ey~ieS~~~N~I~lev~~~~L~raLrsa~~~~ 96 (300)
.+...+..... .+.|.++..++.|.. ++..+.+++-- .=|.+|+=-=..++...++++.+.|..||+++.--.
T Consensus 212 el~k~L~~~~~~~V~i~~~~~~i~f~~-----~~~~~~srLid-g~fPdy~~vip~~~~~~~~v~~~~l~~al~Rv~~~s 285 (378)
T 1vpk_A 212 EVQNVLDNTTEPTITVRYDGRRVSLST-----NDVETVMRVVD-AEFPDYKRVIPETFKTKVVVSRKELRESLKRVMVIA 285 (378)
T ss_dssp HHHHHHHTCCCSEEEEEECSSEEEEEC-----SSEEEEEECCS-SCCCCGGGGSCSCCSEEEEEEHHHHHHHHHHHHHHH
T ss_pred HHHHhhccCCCceEEEEEcCCEEEEEE-----CCEEEEEEecc-ccCCCHHHhcccCCCeEEEEEHHHHHHHHHHHHHHh
Confidence 44455555555 799999999988854 55677777654 478888754334678899999999999999986421
Q ss_pred ccccccCCCCceEEEEEeecCCCCCCCCCceEEEEEECce-eEEEEEeecCcccChhhhchhhhhhcccCCCCCeEEEcC
Q 038444 97 SEIGAAGSAANRLQIKLVKKLPPNCTQAMPFLTFETKGYK-SAVIQDVPISKPLSRAQGLELQTALDMAQDIPPTLVQVP 175 (300)
Q Consensus 97 ~~~~~~~~~a~~v~ikL~kk~~~~~~~~~P~L~~~~~g~~-~~v~hdvPV~~vl~~~~~~~l~eP~~~~~~~p~~~i~lP 175 (300)
.. ....+++.+. + .-|.+...+.. -.....+++. .. . ++..|-+-
T Consensus 286 ~~------~~~~v~l~~~--~--------~~l~i~a~~~d~g~a~e~l~~~--~~-------G---------~~~~i~fN 331 (378)
T 1vpk_A 286 SK------GSESVKFEIE--E--------NVMRLVSKSPDYGEVVDEVEVQ--KE-------G---------EDLVIAFN 331 (378)
T ss_dssp TT------TTCCEEEEEC--S--------SEEEEEEEETTTEEEEEEEECE--EE-------E---------CCEEEEEC
T ss_pred cC------CCceEEEEEe--C--------CEEEEEEcCCccceeEEEEEEE--ec-------C---------CeEEEEEc
Confidence 00 0223555553 2 24566655433 2455556662 21 1 13445454
Q ss_pred ChhhHHHHHHhhhcc-CCEEEEEEEcC
Q 038444 176 DLNQLQNFVHRMKHV-GDLLNVSIYKY 201 (300)
Q Consensus 176 ~l~~l~~ivdR~k~~-~~~v~i~an~~ 201 (300)
+ + -+.|=++.+ ++.++|.-+..
T Consensus 332 ~-~---yL~d~L~~~~~~~v~l~~~~~ 354 (378)
T 1vpk_A 332 P-K---FIEDVLKHIETEEIEMNFVDS 354 (378)
T ss_dssp H-H---HHHHHHHHCCSSEEEEEESCT
T ss_pred H-H---HHHHHHhcCCCCEEEEEECCC
Confidence 3 3 344445555 47788877544
No 39
>3d1g_A DNA polymerase III subunit beta; chemical probe, DNA sliding clamp, DNA replication, rational drug design, antibiotic target, transferase; HET: DNA 322; 1.64A {Escherichia coli} SCOP: d.131.1.1 d.131.1.1 d.131.1.1 PDB: 1mmi_A* 1unn_A* 2pol_A* 3bep_A* 3d1e_A* 3d1f_A* 1ok7_A* 3q4j_A* 3q4k_A* 3qsb_A* 3q4l_A* 2xur_A* 1jql_A* 1jqj_A* 3f1v_A* 3pwe_A*
Probab=43.58 E-value=1.9e+02 Score=26.38 Aligned_cols=76 Identities=5% Similarity=0.121 Sum_probs=48.7
Q ss_pred hHHHHHHhcCC----EEEEEEecCeEEEEeeecCCCceEEEEEEccCCCcCeeEeeecCCCeEEEEEehHHHHHHHhccc
Q 038444 18 RFLPALDKMGK----VCHLFLTREKAYFLHNLLSGEGIQCVAQFHKETLFDDYRISSQNEDCIAFAIDISLLQRAVRSGV 93 (300)
Q Consensus 18 ~iv~~i~kl~k----~cvlrlt~~~l~~i~~~~~~~g~qvw~~l~~~~lF~ey~ieS~~~N~I~lev~~~~L~raLrsa~ 93 (300)
..+.-++-+.+ .+.|.|+++.+.+-....+ ..++--+++ ++ -++..+.+-+|...|.-+|+...
T Consensus 265 ~al~Rvsils~~~~~~v~l~~~~~~l~i~a~~~e--~g~a~e~l~---------~~-~~Ge~~~I~fN~~YL~d~L~~~~ 332 (366)
T 3d1g_A 265 QAFARAAILSNEKFRGVRLYVSENQLKITANNPE--QEEAEEILD---------VT-YSGAEMEIGFNVSYVLDVLNALK 332 (366)
T ss_dssp HHHHHHHHTSCTTTCEEEEEEETTEEEEEEECTT--CCEEEEEEE---------CB-CCSCCEEEEEEHHHHHHHHHHCC
T ss_pred HHHHHHHHHhcCCCceEEEEEeCCEEEEEEcCCC--CceEEEEEE---------EE-ecCCcEEEEEcHHHHHHHHhcCC
Confidence 44444444443 4888999999888643322 222222222 22 12356888899999999999986
Q ss_pred cccccccccCCCCceEEEEEeecC
Q 038444 94 SICSEIGAAGSAANRLQIKLVKKL 117 (300)
Q Consensus 94 ~~~~~~~~~~~~a~~v~ikL~kk~ 117 (300)
++.+.|.++...
T Consensus 333 ------------~~~v~l~~~~~~ 344 (366)
T 3d1g_A 333 ------------CENVRMMLTDSV 344 (366)
T ss_dssp ------------SSEEEEEECCTT
T ss_pred ------------CCEEEEEECCCC
Confidence 477899988764
No 40
>2avt_A DNA polymerase III beta subunit; beta clamp, sliding clamp, replication, transferase; HET: DNA; 2.00A {Streptococcus pyogenes} PDB: 2awa_A*
Probab=41.66 E-value=1.2e+02 Score=27.97 Aligned_cols=66 Identities=9% Similarity=0.075 Sum_probs=44.2
Q ss_pred EEEEEEecCeEEEEeeecCCCceEEEEEEccCCCcCeeEeeecCCCeEEEEEehHHHHHHHhccccccccccccCCCCce
Q 038444 29 VCHLFLTREKAYFLHNLLSGEGIQCVAQFHKETLFDDYRISSQNEDCIAFAIDISLLQRAVRSGVSICSEIGAAGSAANR 108 (300)
Q Consensus 29 ~cvlrlt~~~l~~i~~~~~~~g~qvw~~l~~~~lF~ey~ieS~~~N~I~lev~~~~L~raLrsa~~~~~~~~~~~~~a~~ 108 (300)
.+.|.|+++++.+-.... +..++--+++.+ +|. ++.+.+-+|...|.-+|+... ++.
T Consensus 289 ~v~l~~~~~~l~l~a~~~--e~g~a~e~l~~~----~~~-----Ge~~~I~FN~~YL~d~L~~~~------------~~~ 345 (378)
T 2avt_A 289 TVKLEITQNHISAHVNSP--EVGKVNEDLDIV----SQS-----GSDLTISFNPTYLIESLKAIK------------SET 345 (378)
T ss_dssp CEEEEEETTEEEEEEEET--TTEEEEEECCCS----EEE-----ECCEEEEECHHHHHHHHHTCC------------SSE
T ss_pred eEEEEEeCCEEEEEEeCC--CCceeEEEEeee----eec-----CCeEEEEEcHHHHHHHHhcCC------------CCE
Confidence 378889999988864332 222332222211 233 246888899999999999986 477
Q ss_pred EEEEEeecC
Q 038444 109 LQIKLVKKL 117 (300)
Q Consensus 109 v~ikL~kk~ 117 (300)
+.|.++...
T Consensus 346 v~l~~~~~~ 354 (378)
T 2avt_A 346 VKIHFLSPV 354 (378)
T ss_dssp EEEEECCTT
T ss_pred EEEEECCCC
Confidence 899988764
No 41
>2avt_A DNA polymerase III beta subunit; beta clamp, sliding clamp, replication, transferase; HET: DNA; 2.00A {Streptococcus pyogenes} PDB: 2awa_A*
Probab=40.39 E-value=1e+02 Score=28.47 Aligned_cols=132 Identities=10% Similarity=0.168 Sum_probs=78.8
Q ss_pred CEEEEEEecCeEEEEeeecCCCceEEEEEEccCCCcCeeEeeecCCCeEEEEEehHHHHHHHhccccccccccccCCCCc
Q 038444 28 KVCHLFLTREKAYFLHNLLSGEGIQCVAQFHKETLFDDYRISSQNEDCIAFAIDISLLQRAVRSGVSICSEIGAAGSAAN 107 (300)
Q Consensus 28 k~cvlrlt~~~l~~i~~~~~~~g~qvw~~l~~~~lF~ey~ieS~~~N~I~lev~~~~L~raLrsa~~~~~~~~~~~~~a~ 107 (300)
..+.|.++..++.|.. ++..+.+++-- .=|.+|+=-=..++...+.++.+.|..||+++.--.... ...
T Consensus 220 ~~v~i~~~~~~i~f~~-----~~~~~~srLid-g~fPdy~~viP~~~~~~~~v~~~~l~~al~Rvs~ls~~~-----~~~ 288 (378)
T 2avt_A 220 ETVEVFFSPSQILFRS-----EHISFYTRLLE-GNYPDTDRLLMTEFETEVVFNTQSLRHAMERAFLISNAT-----QNG 288 (378)
T ss_dssp CEEEEEECSSEEEEEC-----SSEEEEEECCC-SCCCCCGGGSCCCCSEEEEEEHHHHHHHHHHHHHHHTTS-----TTC
T ss_pred ceEEEEEcCCEEEEEE-----CCEEEEEEEec-ccCCChhhcCCCCCCEEEEEEHHHHHHHHHHHHHHhccC-----CCc
Confidence 4588999999888854 45677777654 478888643234578899999999999999986421000 022
Q ss_pred eEEEEEeecCCCCCCCCCceEEEEEECcee-EEEEEeecCcccChhhhchhhhhhcccCCCCCeEEEcCChhhHHHHHHh
Q 038444 108 RLQIKLVKKLPPNCTQAMPFLTFETKGYKS-AVIQDVPISKPLSRAQGLELQTALDMAQDIPPTLVQVPDLNQLQNFVHR 186 (300)
Q Consensus 108 ~v~ikL~kk~~~~~~~~~P~L~~~~~g~~~-~v~hdvPV~~vl~~~~~~~l~eP~~~~~~~p~~~i~lP~l~~l~~ivdR 186 (300)
.+++.+. + --|.+...+... ...-.+++. +|. . .+..|-+-+ +-+.|=
T Consensus 289 ~v~l~~~--~--------~~l~l~a~~~e~g~a~e~l~~~---------~~~-------G-e~~~I~FN~----~YL~d~ 337 (378)
T 2avt_A 289 TVKLEIT--Q--------NHISAHVNSPEVGKVNEDLDIV---------SQS-------G-SDLTISFNP----TYLIES 337 (378)
T ss_dssp CEEEEEE--T--------TEEEEEEEETTTEEEEEECCCS---------EEE-------E-CCEEEEECH----HHHHHH
T ss_pred eEEEEEe--C--------CEEEEEEeCCCCceeEEEEeee---------eec-------C-CeEEEEEcH----HHHHHH
Confidence 3555553 2 135555554322 344455551 111 0 234555544 445555
Q ss_pred hhcc-CCEEEEEEEcC
Q 038444 187 MKHV-GDLLNVSIYKY 201 (300)
Q Consensus 187 ~k~~-~~~v~i~an~~ 201 (300)
++.+ ++.++|.-+..
T Consensus 338 L~~~~~~~v~l~~~~~ 353 (378)
T 2avt_A 338 LKAIKSETVKIHFLSP 353 (378)
T ss_dssp HHTCCSSEEEEEECCT
T ss_pred HhcCCCCEEEEEECCC
Confidence 5666 47788877544
No 42
>1vpk_A DNA polymerase III, beta subunit; TM0262, structural genomic center for structural genomics, JCSG, protein structure INI PSI, transferase; HET: DNA; 2.00A {Thermotoga maritima} SCOP: d.131.1.1 d.131.1.1 d.131.1.1
Probab=37.06 E-value=2.4e+02 Score=25.67 Aligned_cols=210 Identities=14% Similarity=0.114 Sum_probs=105.1
Q ss_pred HHHHHhcC-CEEEEEEecCeEEEEeeecCCCceEEEEEEccCCCcCeeEeeecCCCeEEEEEehHHHHHHHhcccccccc
Q 038444 20 LPALDKMG-KVCHLFLTREKAYFLHNLLSGEGIQCVAQFHKETLFDDYRISSQNEDCIAFAIDISLLQRAVRSGVSICSE 98 (300)
Q Consensus 20 v~~i~kl~-k~cvlrlt~~~l~~i~~~~~~~g~qvw~~l~~~~lF~ey~ieS~~~N~I~lev~~~~L~raLrsa~~~~~~ 98 (300)
...+.+|. ..+.+.+..+++.|.+ +....-..+-...=|.+|.- -++...++++.+.|.++++++.-++++
T Consensus 88 ~ei~r~Lp~~~V~i~~~~~~l~i~~-----g~~~f~l~~l~~~~fP~~~~---~~~~~~~~i~~~~L~~~I~r~~~a~s~ 159 (378)
T 1vpk_A 88 QKMVKVLPDEITELSLEGDALVISS-----GSTVFRITTMPADEFPEITP---AESGITFEVDTSLLEEMVEKVIFAAAK 159 (378)
T ss_dssp HHHHTTCCSSEEEEEEETTEEEEEE-----TTEEEEEECBCCTTSCCCCC---CCSSEEEEEEHHHHHHHHHHHGGGSCC
T ss_pred HHHHHhCCCCcEEEEEeCCEEEEEE-----CCEEEEEcccChHHCCCCCC---CCCceEEEECHHHHHHHHhheEEEEEC
Confidence 34455554 3577888888776644 33444444422224555521 134567999999999999998754221
Q ss_pred ccccCCCCceEEEEEeecCCCCCCCCCceEEEEEECceeEEEEEeecCcccChhhhchhhhhhcccCCCCCeEEEcCChh
Q 038444 99 IGAAGSAANRLQIKLVKKLPPNCTQAMPFLTFETKGYKSAVIQDVPISKPLSRAQGLELQTALDMAQDIPPTLVQVPDLN 178 (300)
Q Consensus 99 ~~~~~~~a~~v~ikL~kk~~~~~~~~~P~L~~~~~g~~~~v~hdvPV~~vl~~~~~~~l~eP~~~~~~~p~~~i~lP~l~ 178 (300)
..+- .--..+.+.+ .+ ..|.+...+..+....++++. . ..+ ..+.+|. +
T Consensus 160 ~e~r-~~l~GV~l~~--~~--------~~l~~vAtDg~rla~~~~~~~-~-----------------~~~-~~~iip~-k 208 (378)
T 1vpk_A 160 DEFM-RNLNGVFWEL--HK--------NLLRLVASDGFRLALAEEQIE-N-----------------EEE-ASFLLSL-K 208 (378)
T ss_dssp CTTC-TTTSEEEEEE--ET--------TEEEEEEECSSEEEEEEEECC-C-----------------CSC-EEEEEEH-H
T ss_pred CCCc-ceeeEEEEEE--EC--------CEEEEEEeCcccEEEEEEecC-C-----------------CCc-ceEEEEc-h
Confidence 0000 0001244443 32 245555444323333344541 0 112 4566776 4
Q ss_pred hHHHHHHhhhccCC-EEEEEEEcCCeEEEEEeecceEEeEEeccccccccccCCCCccccccccchhhhhcCCCCeEEEE
Q 038444 179 QLQNFVHRMKHVGD-LLNVSIYKYGDLHLQISTTLITLGAEFRKLLVIGEKAVAPSEDRNLSAQTRSERAISRGDAQSVQ 257 (300)
Q Consensus 179 ~l~~ivdR~k~~~~-~v~i~an~~G~L~l~v~t~~v~v~t~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 257 (300)
.+..+..-++...+ .++|..+ ++.+.+.. +...+.+ .|.- ..- |.-. +-........+.
T Consensus 209 ~l~el~k~L~~~~~~~V~i~~~-~~~i~f~~--~~~~~~s---rLid---g~f-Pdy~----------~vip~~~~~~~~ 268 (378)
T 1vpk_A 209 SMKEVQNVLDNTTEPTITVRYD-GRRVSLST--NDVETVM---RVVD---AEF-PDYK----------RVIPETFKTKVV 268 (378)
T ss_dssp HHHHHHHHHHTCCCSEEEEEEC-SSEEEEEC--SSEEEEE---ECCS---SCC-CCGG----------GGSCSCCSEEEE
T ss_pred HHHHHHHhhccCCCceEEEEEc-CCEEEEEE--CCEEEEE---Eecc---ccC-CCHH----------HhcccCCCeEEE
Confidence 44444444444455 7888874 34444444 3333332 2330 000 1000 001111357899
Q ss_pred EechhHHhhcccccc----CCcEEEEEEECCCeEE
Q 038444 258 VSVKHFSKSLQCHLA----KPDCAFFGIAPQGACL 288 (300)
Q Consensus 258 Vd~k~l~~~L~~~~~----~p~~v~~~i~~~~~~~ 288 (300)
|+.+.|...+.--.+ +...|.+.+.++...+
T Consensus 269 v~~~~l~~al~Rv~~~s~~~~~~v~l~~~~~~l~i 303 (378)
T 1vpk_A 269 VSRKELRESLKRVMVIASKGSESVKFEIEENVMRL 303 (378)
T ss_dssp EEHHHHHHHHHHHHHHHTTTTCCEEEEECSSEEEE
T ss_pred EEHHHHHHHHHHHHHHhcCCCceEEEEEeCCEEEE
Confidence 999999998863211 1224666776665434
No 43
>3g65_A Cell cycle checkpoint control protein RAD9A; PCNA, DNA binding clamp, DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein; 2.90A {Homo sapiens}
Probab=36.08 E-value=1.3e+02 Score=26.91 Aligned_cols=98 Identities=11% Similarity=0.059 Sum_probs=65.8
Q ss_pred hHHHhHHHHHHhcCCEEEEEEe-cCeEEEEeeec---CCCceEEEEEE--ccCCCcCeeEeeecCCCeEEEEEehHHHHH
Q 038444 14 LLEKRFLPALDKMGKVCHLFLT-REKAYFLHNLL---SGEGIQCVAQF--HKETLFDDYRISSQNEDCIAFAIDISLLQR 87 (300)
Q Consensus 14 ~l~~~iv~~i~kl~k~cvlrlt-~~~l~~i~~~~---~~~g~qvw~~l--~~~~lF~ey~ieS~~~N~I~lev~~~~L~r 87 (300)
..|+.++.-+..-..++.|..+ ++++.|-+-.. +.+.-.+..++ ..+ =|++|.++. ...+.+.+..|..
T Consensus 150 ~~l~e~l~~f~~~~eevtl~~~~~~~v~~~s~~e~~~d~~~~~~~Tel~i~~~-ef~~~~v~~----~~~itf~lKefra 224 (296)
T 3g65_A 150 RVLGEAVLPFSPALAEVTLGIGRGRRVILRSYHEEEADSTAKAMVTEMCLGEE-DFQQLQAQE----GVAITFCLKEFRG 224 (296)
T ss_dssp HHHHHHSTTSCTTCCEEEEEEETTTEEEEEECCC-----CCCCCEEEEEECGG-GCSEEECCT----TCEEEEEHHHHHH
T ss_pred HHHHHHHHhCcCCcceEEEEECCCCeEEEEEeccccccccCceEEEEEEEChh-HheeEecCC----CcEEEEEHHHHHH
Confidence 3457888888888889999999 68988864321 11213444444 444 689999863 2446667888888
Q ss_pred HHhccccccccccccCCCCceEEEEEeecCCCCCCCCCceEEEEEEC
Q 038444 88 AVRSGVSICSEIGAAGSAANRLQIKLVKKLPPNCTQAMPFLTFETKG 134 (300)
Q Consensus 88 aLrsa~~~~~~~~~~~~~a~~v~ikL~kk~~~~~~~~~P~L~~~~~g 134 (300)
.|.-++.. ...+.|.+...+ .|++ |++++
T Consensus 225 il~~ae~~----------~~~i~i~f~~pG-------~Pl~-~~~~~ 253 (296)
T 3g65_A 225 LLSFAESA----------NLNLSIHFDAPG-------RPAI-FTIKD 253 (296)
T ss_dssp HHHHHHHT----------TCEEEEECCSTT-------SCEE-EEEEC
T ss_pred HHHHHHhc----------CCeEEEEECCCC-------CcEE-EEEeC
Confidence 88888763 457888888876 5864 44543
No 44
>3d1g_A DNA polymerase III subunit beta; chemical probe, DNA sliding clamp, DNA replication, rational drug design, antibiotic target, transferase; HET: DNA 322; 1.64A {Escherichia coli} SCOP: d.131.1.1 d.131.1.1 d.131.1.1 PDB: 1mmi_A* 1unn_A* 2pol_A* 3bep_A* 3d1e_A* 3d1f_A* 1ok7_A* 3q4j_A* 3q4k_A* 3qsb_A* 3q4l_A* 2xur_A* 1jql_A* 1jqj_A* 3f1v_A* 3pwe_A*
Probab=35.86 E-value=1.3e+02 Score=27.62 Aligned_cols=140 Identities=9% Similarity=0.047 Sum_probs=84.5
Q ss_pred hHHHHHHhcC----CEEEEEEecCeEEEEeeecCCCceEEEEEEccCCCcCeeEeeecCCCeEEEEEehHHHHHHHhccc
Q 038444 18 RFLPALDKMG----KVCHLFLTREKAYFLHNLLSGEGIQCVAQFHKETLFDDYRISSQNEDCIAFAIDISLLQRAVRSGV 93 (300)
Q Consensus 18 ~iv~~i~kl~----k~cvlrlt~~~l~~i~~~~~~~g~qvw~~l~~~~lF~ey~ieS~~~N~I~lev~~~~L~raLrsa~ 93 (300)
+.+.-+.|+- ..+.+.++..++.|.. ++..+.+++-- .=|.+|+=-=..++...++++.+.|..||+++.
T Consensus 198 k~l~el~kll~~~~~~v~i~~~~~~i~f~~-----~~~~~~srLid-g~fPdy~~viP~~~~~~~~v~~~~l~~al~Rvs 271 (366)
T 3d1g_A 198 KGVIELMRMLDGGDNPLRVQIGSNNIRAHV-----GDFIFTSKLVD-GRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAA 271 (366)
T ss_dssp HHHHHHHHTCCSSSCCEEEEECSSEEEEEE-----TTEEEEEECCS-SCCCCHHHHSCSCCCEEEEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCccEEEEEcCCEEEEEE-----CCEEEEEEEec-ccCCChhhcCCCCCCeEEEEEHHHHHHHHHHHH
Confidence 4445555552 3588999999888854 45677777654 478888754334678899999999999999986
Q ss_pred cccccccccCCCCceEEEEEeecCCCCCCCCCceEEEEEECce-eEEEEEeecCcccChhhhchhhhhhcccCCCCCeEE
Q 038444 94 SICSEIGAAGSAANRLQIKLVKKLPPNCTQAMPFLTFETKGYK-SAVIQDVPISKPLSRAQGLELQTALDMAQDIPPTLV 172 (300)
Q Consensus 94 ~~~~~~~~~~~~a~~v~ikL~kk~~~~~~~~~P~L~~~~~g~~-~~v~hdvPV~~vl~~~~~~~l~eP~~~~~~~p~~~i 172 (300)
--... ....+++.+. + .-|.+...+.. -.....+|+. .. -++..|
T Consensus 272 ils~~------~~~~v~l~~~--~--------~~l~i~a~~~e~g~a~e~l~~~--~~----------------Ge~~~I 317 (366)
T 3d1g_A 272 ILSNE------KFRGVRLYVS--E--------NQLKITANNPEQEEAEEILDVT--YS----------------GAEMEI 317 (366)
T ss_dssp HTSCT------TTCEEEEEEE--T--------TEEEEEEECTTCCEEEEEEECB--CC----------------SCCEEE
T ss_pred HHhcC------CCceEEEEEe--C--------CEEEEEEcCCCCceEEEEEEEE--ec----------------CCcEEE
Confidence 43100 0223555553 2 23566655433 2455567762 21 123445
Q ss_pred EcCChhhHHHHHHhhhcc-CCEEEEEEEcC
Q 038444 173 QVPDLNQLQNFVHRMKHV-GDLLNVSIYKY 201 (300)
Q Consensus 173 ~lP~l~~l~~ivdR~k~~-~~~v~i~an~~ 201 (300)
-+-+ +-+.|=++.+ ++.+++.-+..
T Consensus 318 ~fN~----~YL~d~L~~~~~~~v~l~~~~~ 343 (366)
T 3d1g_A 318 GFNV----SYVLDVLNALKCENVRMMLTDS 343 (366)
T ss_dssp EEEH----HHHHHHHHHCCSSEEEEEECCT
T ss_pred EEcH----HHHHHHHhcCCCCEEEEEECCC
Confidence 4543 3445555555 47888887654
No 45
>3p16_A DNA polymerase III subunit beta; DNA polymerase III sliding clamp, transferase; HET: DNA; 2.89A {Mycobacterium tuberculosis} PDB: 3rb9_A*
Probab=31.69 E-value=1.6e+02 Score=27.51 Aligned_cols=71 Identities=10% Similarity=0.085 Sum_probs=49.0
Q ss_pred CEEEEEEecCeEEEEeeecCCCceEEEEEEccCCCcCeeEeeecCCCeEEEEEehHHHHHHHhccccccccccccCCCCc
Q 038444 28 KVCHLFLTREKAYFLHNLLSGEGIQCVAQFHKETLFDDYRISSQNEDCIAFAIDISLLQRAVRSGVSICSEIGAAGSAAN 107 (300)
Q Consensus 28 k~cvlrlt~~~l~~i~~~~~~~g~qvw~~l~~~~lF~ey~ieS~~~N~I~lev~~~~L~raLrsa~~~~~~~~~~~~~a~ 107 (300)
+.+.|.|++++|.+-.... +..+.--+++.+ |. .+.+.+-+|...|.-+|+... ++
T Consensus 301 ~~V~l~~~~~~l~i~a~~~--e~g~a~E~i~~~-----~~-----Ge~l~I~FN~~YLlD~L~~i~------------~e 356 (408)
T 3p16_A 301 AQVRMEFADGSVRLSAGAD--DVGRAEEDLVVD-----YA-----GEPLTIAFNPTYLTDGLSSLR------------SE 356 (408)
T ss_dssp CCEEEEEETTEEEEEEECS--SSCEEEEEEECE-----EE-----ESCCEEEECHHHHHHHHHHSC------------SS
T ss_pred ceEEEEEeCCEEEEEEeCC--CCceEEEEEEEE-----Ee-----CCcEEEEEeHHHHHHHHhccC------------CC
Confidence 4588999999998865322 223444444322 32 235888899999999999997 46
Q ss_pred eEEEEEeecCCCCCCCCCceEE
Q 038444 108 RLQIKLVKKLPPNCTQAMPFLT 129 (300)
Q Consensus 108 ~v~ikL~kk~~~~~~~~~P~L~ 129 (300)
.+.|.++... .|++-
T Consensus 357 ~V~l~~~~~~-------~P~~i 371 (408)
T 3p16_A 357 RVSFGFTTAG-------KPALL 371 (408)
T ss_dssp EEEEEESCTT-------SCEEE
T ss_pred eEEEEECCCC-------CcEEE
Confidence 7899988775 57654
No 46
>3t0p_A DNA polymerase III, beta subunit; DNA clamp, structural genomics, joint center for structural JCSG, protein structure initiative; HET: DNA MSE; 2.26A {Eubacterium rectale}
Probab=31.30 E-value=3.1e+02 Score=25.10 Aligned_cols=141 Identities=10% Similarity=0.172 Sum_probs=85.6
Q ss_pred hHHHHHHhcC-----CEEEEEEecCeEEEEeeecCCCceEEEEEEccCCCcCeeEeeecCCCeEEEEEehHHHHHHHhcc
Q 038444 18 RFLPALDKMG-----KVCHLFLTREKAYFLHNLLSGEGIQCVAQFHKETLFDDYRISSQNEDCIAFAIDISLLQRAVRSG 92 (300)
Q Consensus 18 ~iv~~i~kl~-----k~cvlrlt~~~l~~i~~~~~~~g~qvw~~l~~~~lF~ey~ieS~~~N~I~lev~~~~L~raLrsa 92 (300)
+.+.-+.|+- ..+.|.++..++.|.. ++..+.+++- +.=|.+|+=-=..++...+.++.+.|..||+++
T Consensus 198 k~l~el~kll~~~~~~~V~i~~~~~~i~f~~-----~~~~~~srLi-dG~fPdy~~viP~~~~~~~~v~r~~l~~al~Rv 271 (371)
T 3t0p_A 198 KTLQEISKIIPGSADEDVVIYITNNHIVFEF-----ENTTVVSRLI-EGEYFKIDQMLSSDYDTKVRINKRELLDCIDRA 271 (371)
T ss_dssp HHHHHHHHHCCCCTTSEEEEEEETTEEEEEE-----TTEEEEEECC-CSCCCCCGGGCCCCCSEEEEEEHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcCCCceEEEEEcCCEEEEEE-----CCEEEEEEEe-cccCCChhhhccccCCEEEEEEHHHHHHHHHHH
Confidence 4455555543 5799999999998854 5678888874 447888863222356788999999999999998
Q ss_pred ccccccccccCCCCceEEEEEeecCCCCCCCCCceEEEEEECceeEEEEEeecCcccChhhhchhhhhhcccCCCCCeEE
Q 038444 93 VSICSEIGAAGSAANRLQIKLVKKLPPNCTQAMPFLTFETKGYKSAVIQDVPISKPLSRAQGLELQTALDMAQDIPPTLV 172 (300)
Q Consensus 93 ~~~~~~~~~~~~~a~~v~ikL~kk~~~~~~~~~P~L~~~~~g~~~~v~hdvPV~~vl~~~~~~~l~eP~~~~~~~p~~~i 172 (300)
.--.+.. ....+++.+... -|.+...+..-.....+|+. .. . ++..|
T Consensus 272 s~ls~e~-----~~~~V~l~~~~~----------~l~i~~~~~~g~a~E~i~~~--~~-------G---------e~~~I 318 (371)
T 3t0p_A 272 TLLVKEG-----DKKPIIMNITDG----------NMELRINSFIGSMNEDIDID--KD-------G---------KDIMI 318 (371)
T ss_dssp HTTCCC------CCCCEEEEEETT----------EEEEEEECSSEEEEEEEECE--EE-------E---------CCEEE
T ss_pred HHhhccC-----CCceEEEEEeCC----------EEEEEEeCCCCcEEEEEEEE--ec-------C---------CcEEE
Confidence 6421000 012355555322 34444443223455567772 20 1 13445
Q ss_pred EcCChhhHHHHHHhhhccC-CEEEEEEEcC
Q 038444 173 QVPDLNQLQNFVHRMKHVG-DLLNVSIYKY 201 (300)
Q Consensus 173 ~lP~l~~l~~ivdR~k~~~-~~v~i~an~~ 201 (300)
-+-+ +=++|=++.+. +.++++-+..
T Consensus 319 ~FN~----~yLld~L~~~~~~~v~l~~~~~ 344 (371)
T 3t0p_A 319 GFNP----KFFIDALRVIDEEEVNLYMVNP 344 (371)
T ss_dssp EECH----HHHHHHHTTCCCSEEEEEESCT
T ss_pred EEch----HHHHHHHhCCCCCeEEEEECCC
Confidence 4544 55677777775 6777777543
No 47
>3t0p_A DNA polymerase III, beta subunit; DNA clamp, structural genomics, joint center for structural JCSG, protein structure initiative; HET: DNA MSE; 2.26A {Eubacterium rectale}
Probab=24.72 E-value=4e+02 Score=24.29 Aligned_cols=69 Identities=12% Similarity=0.016 Sum_probs=48.7
Q ss_pred EEEEEEecCeEEEEeeecCCCceEEEEEEccCCCcCeeEeeecCCCeEEEEEehHHHHHHHhccccccccccccCCCCce
Q 038444 29 VCHLFLTREKAYFLHNLLSGEGIQCVAQFHKETLFDDYRISSQNEDCIAFAIDISLLQRAVRSGVSICSEIGAAGSAANR 108 (300)
Q Consensus 29 ~cvlrlt~~~l~~i~~~~~~~g~qvw~~l~~~~lF~ey~ieS~~~N~I~lev~~~~L~raLrsa~~~~~~~~~~~~~a~~ 108 (300)
.+.|.|+++.+.+-.+. +..++--+++. +|. +..+.+-+|...|.-+|+... ++.
T Consensus 282 ~V~l~~~~~~l~i~~~~---~~g~a~E~i~~-----~~~-----Ge~~~I~FN~~yLld~L~~~~------------~~~ 336 (371)
T 3t0p_A 282 PIIMNITDGNMELRINS---FIGSMNEDIDI-----DKD-----GKDIMIGFNPKFFIDALRVID------------EEE 336 (371)
T ss_dssp CEEEEEETTEEEEEEEC---SSEEEEEEEEC-----EEE-----ECCEEEEECHHHHHHHHTTCC------------CSE
T ss_pred eEEEEEeCCEEEEEEeC---CCCcEEEEEEE-----Eec-----CCcEEEEEchHHHHHHHhCCC------------CCe
Confidence 47888999999886532 23345444442 232 246888999999999999987 467
Q ss_pred EEEEEeecCCCCCCCCCceEE
Q 038444 109 LQIKLVKKLPPNCTQAMPFLT 129 (300)
Q Consensus 109 v~ikL~kk~~~~~~~~~P~L~ 129 (300)
+.|+++... .|++-
T Consensus 337 v~l~~~~~~-------~p~~i 350 (371)
T 3t0p_A 337 VNLYMVNPK-------APCFI 350 (371)
T ss_dssp EEEEESCTT-------SCEEE
T ss_pred EEEEECCCC-------CcEEE
Confidence 899998765 57753
Done!