BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038446
(231 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Z51|A Chain A, Crystal Structure Of Arabidopsis Cnfu Involved In Iron-
Sulfur Cluster Biosynthesis
Length = 154
Score = 240 bits (612), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 119/153 (77%), Positives = 137/153 (89%)
Query: 78 LPLTEENVERVLDEVRPGLMADGGNVALHEIDGLVVVLKLQGACGSCPSSTMTLKMGIET 137
+PLTEENVE VLDE+RP LM+DGGNVALHEIDG VV +KLQGACGSCPSSTMT+KMGIE
Sbjct: 2 VPLTEENVESVLDEIRPYLMSDGGNVALHEIDGNVVRVKLQGACGSCPSSTMTMKMGIER 61
Query: 138 RLRDKIPEILEVEQILDTETGLELNEENIEKVLAEIRPYLAGTGGGILELIQIDDYVVRV 197
RL +KIPEI+ VE + D ETGLELNEENIEKVL EIRPYL GT G L+L++I+D +V++
Sbjct: 62 RLMEKIPEIVAVEALPDEETGLELNEENIEKVLEEIRPYLIGTADGSLDLVEIEDPIVKI 121
Query: 198 RLSGPAAGVMTVRVALTQKLREKIPSIAAVQLI 230
R++GPAAGVMTVRVA+TQKLREKIPSIAAVQLI
Sbjct: 122 RITGPAAGVMTVRVAVTQKLREKIPSIAAVQLI 154
>pdb|2JNV|A Chain A, Solution Structure Of C-Terminal Domain Of Nifu-Like
Protein From Oryza Sativa
Length = 91
Score = 114 bits (285), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 58/83 (69%), Positives = 66/83 (79%)
Query: 78 LPLTEENVERVLDEVRPGLMADGGNVALHEIDGLVVVLKLQGACGSCPSSTMTLKMGIET 137
LPLT NVE VLD+VRP L ADGG+VALHEI G VV LKLQGACGSCPSS +T+K GIE
Sbjct: 3 LPLTAGNVESVLDQVRPYLTADGGDVALHEIAGNVVRLKLQGACGSCPSSLITIKRGIER 62
Query: 138 RLRDKIPEILEVEQILDTETGLE 160
RL +KIP++ VE + D ETGLE
Sbjct: 63 RLMEKIPDVAAVEPVTDKETGLE 85
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 5/75 (6%)
Query: 158 GLELNEENIEKVLAEIRPYLAGTGGGILELIQIDDYVVRVRLSGPA----AGVMTVRVAL 213
GL L N+E VL ++RPYL GG + L +I VVR++L G + ++T++ +
Sbjct: 2 GLPLTAGNVESVLDQVRPYLTADGGDV-ALHEIAGNVVRLKLQGACGSCPSSLITIKRGI 60
Query: 214 TQKLREKIPSIAAVQ 228
++L EKIP +AAV+
Sbjct: 61 ERRLMEKIPDVAAVE 75
>pdb|1TH5|A Chain A, Solution Structure Of C-Terminal Domain Of Nifu-Like
Protein From Oryza Sativa
Length = 74
Score = 100 bits (250), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 50/73 (68%), Positives = 61/73 (83%)
Query: 159 LELNEENIEKVLAEIRPYLAGTGGGILELIQIDDYVVRVRLSGPAAGVMTVRVALTQKLR 218
LELNEEN+EKVL EIRPYLAGTGGG L+ + I +V+VRL+GPAA V TVR+A+++KLR
Sbjct: 2 LELNEENVEKVLNEIRPYLAGTGGGGLQFLMIKGPIVKVRLTGPAAVVRTVRIAVSKKLR 61
Query: 219 EKIPSIAAVQLID 231
EKIPSI VQL+
Sbjct: 62 EKIPSIQIVQLLS 74
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 6/79 (7%)
Query: 77 VLPLTEENVERVLDEVRPGLMAD-GGNVALHEIDGLVVVLKLQGACGSCPSSTMTLKMGI 135
+L L EENVE+VL+E+RP L GG + I G +V ++L G + T+++ +
Sbjct: 1 MLELNEENVEKVLNEIRPYLAGTGGGGLQFLMIKGPIVKVRLTGPA----AVVRTVRIAV 56
Query: 136 ETRLRDKIPEILEVEQILD 154
+LR+KIP I ++ Q+L
Sbjct: 57 SKKLREKIPSI-QIVQLLS 74
>pdb|1XHJ|A Chain A, Solution Structure Of The Staphylococcus Epidermidis
Protein Se0630. Northest Structural Genomics Consortium
Target Ser8
Length = 88
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 53/75 (70%)
Query: 79 PLTEENVERVLDEVRPGLMADGGNVALHEIDGLVVVLKLQGACGSCPSSTMTLKMGIETR 138
P + V V++ +RP L+ DGG+ L +++ +V L+L GACG+CPSST+TLK GIE
Sbjct: 6 PTMFDQVAEVIERLRPFLLRDGGDCTLVDVEDGIVKLQLHGACGTCPSSTITLKAGIERA 65
Query: 139 LRDKIPEILEVEQIL 153
L +++P ++EVEQ+
Sbjct: 66 LHEEVPGVIEVEQVF 80
Score = 33.5 bits (75), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 164 ENIEKVLAEIRPYLAGTGGGILELIQIDDYVVRVRLSGPA----AGVMTVRVALTQKLRE 219
+ + +V+ +RP+L GG L+ ++D +V+++L G + +T++ + + L E
Sbjct: 10 DQVAEVIERLRPFLLRDGGDCT-LVDVEDGIVKLQLHGACGTCPSSTITLKAGIERALHE 68
Query: 220 KIPSIAAVQLI 230
++P + V+ +
Sbjct: 69 EVPGVIEVEQV 79
>pdb|1VEH|A Chain A, Solution Structure Of Rsgi Ruh-018, A Nifu-Like Domain Of
Hirip5 Protein From Mouse Cdna
Length = 92
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 85 VERVLD-EVRPGLMADGGNVALHEIDGLVVVLKLQGACGSCPSSTMTLKMGIETRLRDKI 143
++ +LD +RP + DGG+V + +V LKLQG+C SCPSS +TLK GI+ L+ I
Sbjct: 18 IKELLDTRIRPTVQEDGGDVIYRGFEDGIVRLKLQGSCTSCPSSIITLKSGIQNMLQFYI 77
Query: 144 PEILEVEQILDTETG 158
PE+ VEQ+ +G
Sbjct: 78 PEVEGVEQVSGPSSG 92
>pdb|4GF2|A Chain A, Crystal Structure Of Plasmodium Falciparum Erythrocyte
Binding Antigen 140 (Pfeba-140BAEBL)
Length = 615
Score = 31.6 bits (70), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Query: 61 NHVRRKHRGLVVSPCCVLPLTEENVERVLDEVRPGLMADGGNVALHEIDGLVVVLKLQGA 120
NH+ H+G + C ++P E + + E + + + L+ D V K +
Sbjct: 152 NHMIVNHKGNIAKECAIIPAEEPQINLWIKEWNENFLMEKKRLFLNIKDKCVENKKYEAC 211
Query: 121 CGSC--PSSTMT 130
G C P S+ T
Sbjct: 212 FGGCRLPCSSYT 223
>pdb|3PU5|A Chain A, The Crystal Structure Of A Putative Extracellular
Solute-Binding Protein From Bordetella Parapertussis
Length = 333
Score = 30.4 bits (67), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 20/27 (74%)
Query: 205 GVMTVRVALTQKLREKIPSIAAVQLID 231
G + +V ++KL+ ++PSI +VQL+D
Sbjct: 278 GAVNRKVQYSEKLKHRLPSIDSVQLVD 304
>pdb|2BIF|A Chain A, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase H256a
Mutant With F6p In Phosphatase Active Site
pdb|2BIF|B Chain B, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase H256a
Mutant With F6p In Phosphatase Active Site
Length = 469
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 11/103 (10%)
Query: 93 RPGLMADGGNVALHEIDGLVVVLKLQGACGSCPSSTMTLKM---GIETR-------LRDK 142
RP L A V + L+V++ L + S +T + G+ TR RD
Sbjct: 23 RPALHASQRGVCMTNCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDM 82
Query: 143 IPEILEVEQIL-DTETGLELNEENIEKVLAEIRPYLAGTGGGI 184
+ E L D E GL++ ++ L ++R +L+ GG +
Sbjct: 83 VKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRKFLSEEGGHV 125
>pdb|1BIF|A Chain A, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase
Bifunctional Enzyme Complexed With Atp-G-S And Phosphate
Length = 469
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 11/103 (10%)
Query: 93 RPGLMADGGNVALHEIDGLVVVLKLQGACGSCPSSTMTLKM---GIETR-------LRDK 142
RP L A V + L+V++ L + S +T + G+ TR RD
Sbjct: 23 RPALHASQRGVCMTNCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDM 82
Query: 143 IPEILEVEQIL-DTETGLELNEENIEKVLAEIRPYLAGTGGGI 184
+ E L D E GL++ ++ L ++R +L+ GG +
Sbjct: 83 VKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRKFLSEEGGHV 125
>pdb|3BIF|A Chain A, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase Empty
6-Pf-2k Active Site
Length = 468
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 11/103 (10%)
Query: 93 RPGLMADGGNVALHEIDGLVVVLKLQGACGSCPSSTMTLKM---GIETR-------LRDK 142
RP L A V + L+V++ L + S +T + G+ TR RD
Sbjct: 22 RPALHASQRGVCMTNCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDM 81
Query: 143 IPEILEVEQIL-DTETGLELNEENIEKVLAEIRPYLAGTGGGI 184
+ E L D E GL++ ++ L ++R +L+ GG +
Sbjct: 82 VKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRKFLSEEGGHV 124
>pdb|1CQD|A Chain A, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|B Chain B, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|C Chain C, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|D Chain D, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
Length = 221
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 109 DGLVVVLKLQGACGSCPS-STMTLKMGIETRLRDKIPEILEVEQILDTET 157
+G VV +K QG CGSC + ST+ GI + + + E +Q++D T
Sbjct: 12 NGAVVPVKNQGGCGSCWAFSTVAAVEGINQIVTGDLISLSE-QQLVDCTT 60
>pdb|2O6I|A Chain A, Structure Of An Enterococcus Faecalis Hd Domain
Phosphohydrolase
pdb|2O6I|B Chain B, Structure Of An Enterococcus Faecalis Hd Domain
Phosphohydrolase
pdb|3IRH|A Chain A, Structure Of An Enterococcus Faecalis Hd-Domain Protein
Complexed With Dgtp And Datp
pdb|3IRH|B Chain B, Structure Of An Enterococcus Faecalis Hd-Domain Protein
Complexed With Dgtp And Datp
pdb|3IRH|C Chain C, Structure Of An Enterococcus Faecalis Hd-Domain Protein
Complexed With Dgtp And Datp
pdb|3IRH|D Chain D, Structure Of An Enterococcus Faecalis Hd-Domain Protein
Complexed With Dgtp And Datp
Length = 480
Score = 27.3 bits (59), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 157 TGLELNEENIEKVLAEIRPYLAGTGGGILELIQIDDYVV 195
TG E ++ ++L IRPY G + + ++DY+V
Sbjct: 219 TGTEYGTFDLTRILRVIRPYKGGIAFAMNGMHAVEDYIV 257
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,454,848
Number of Sequences: 62578
Number of extensions: 202544
Number of successful extensions: 639
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 615
Number of HSP's gapped (non-prelim): 31
length of query: 231
length of database: 14,973,337
effective HSP length: 96
effective length of query: 135
effective length of database: 8,965,849
effective search space: 1210389615
effective search space used: 1210389615
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)