Query 038446
Match_columns 231
No_of_seqs 218 out of 1784
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 19:22:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038446.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038446hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2z51_A NIFU-like protein 2, ch 100.0 1.1E-49 3.8E-54 331.8 13.9 154 77-230 1-154 (154)
2 1xhj_A Nitrogen fixation prote 99.9 8.1E-25 2.8E-29 167.1 7.1 74 82-155 9-82 (88)
3 1th5_A NIFU1; iron-sulfur clus 99.9 2.1E-24 7.3E-29 159.9 5.0 71 160-231 3-74 (74)
4 1veh_A NIFU-like protein hirip 99.9 6.7E-24 2.3E-28 163.1 4.8 76 81-156 14-90 (92)
5 1xhj_A Nitrogen fixation prote 99.9 1.6E-22 5.5E-27 154.3 6.2 67 163-230 9-79 (88)
6 1th5_A NIFU1; iron-sulfur clus 99.8 3.8E-22 1.3E-26 147.8 4.1 71 78-152 2-73 (74)
7 1veh_A NIFU-like protein hirip 99.8 2.7E-21 9.3E-26 148.6 6.1 68 162-230 14-86 (92)
8 2z51_A NIFU-like protein 2, ch 99.8 2.9E-19 9.8E-24 148.6 9.4 76 72-151 77-153 (154)
9 3cq1_A Putative uncharacterize 97.1 0.0027 9.1E-08 48.1 8.3 66 162-229 7-79 (103)
10 3cq1_A Putative uncharacterize 97.0 0.0021 7.3E-08 48.7 7.7 68 81-150 7-78 (103)
11 1uwd_A Hypothetical protein TM 96.4 0.011 3.7E-07 44.6 7.5 69 80-150 6-79 (103)
12 1uwd_A Hypothetical protein TM 96.1 0.012 4.2E-07 44.3 6.4 66 162-229 7-80 (103)
13 3lno_A Putative uncharacterize 95.5 0.03 1E-06 42.7 6.3 69 161-229 8-83 (108)
14 3lno_A Putative uncharacterize 94.8 0.05 1.7E-06 41.5 5.8 71 80-151 8-83 (108)
15 2ew9_A Copper-transporting ATP 74.0 16 0.00055 26.8 7.9 96 113-228 6-112 (149)
16 1xg8_A Hypothetical protein SA 73.8 3.4 0.00012 32.2 4.0 59 120-179 18-85 (111)
17 2rop_A Copper-transporting ATP 66.1 15 0.00052 29.2 6.6 32 193-228 122-154 (202)
18 3prb_A FKBP-type peptidyl-prol 63.6 30 0.001 29.7 8.3 105 97-231 110-218 (231)
19 1p6t_A Potential copper-transp 62.0 31 0.001 25.5 7.3 89 114-227 9-105 (151)
20 1xg8_A Hypothetical protein SA 55.3 9.3 0.00032 29.8 3.2 29 195-224 8-46 (111)
21 3ux2_A MIP18 family protein FA 53.8 15 0.00051 29.3 4.3 61 110-171 49-117 (130)
22 3dxs_X Copper-transporting ATP 43.4 21 0.00072 23.2 3.2 30 113-150 4-34 (74)
23 3fry_A Probable copper-exporti 41.3 34 0.0012 22.4 4.1 30 194-228 6-36 (73)
24 3prb_A FKBP-type peptidyl-prol 38.2 82 0.0028 26.9 6.9 68 79-152 150-217 (231)
25 4a4j_A Pacszia, cation-transpo 36.2 32 0.0011 21.8 3.2 31 112-150 3-34 (69)
26 1q8l_A Copper-transporting ATP 32.2 1.1E+02 0.0037 20.1 5.8 31 112-150 10-41 (84)
27 3h1q_A Ethanolamine utilizatio 31.4 51 0.0017 27.1 4.4 103 100-218 148-251 (272)
28 1sh8_A Hypothetical protein PA 29.3 58 0.002 24.6 4.1 44 77-122 2-45 (154)
29 3iwl_A Copper transport protei 29.1 36 0.0012 22.0 2.5 29 113-150 4-32 (68)
30 2qwz_A Phenylacetic acid degra 28.2 1.3E+02 0.0046 23.1 6.2 43 74-119 18-60 (159)
31 3kij_A Probable glutathione pe 28.1 95 0.0032 23.7 5.2 34 98-131 26-60 (180)
32 3gr0_A Protein PRGH; type III 26.6 2.8E+02 0.0097 23.2 8.9 109 91-229 7-126 (197)
33 3gr1_A Protein PRGH; type III 25.1 2.9E+02 0.0098 23.7 8.1 106 94-229 10-126 (227)
34 2qzb_A Uncharacterized protein 24.6 65 0.0022 26.7 3.7 105 76-205 26-143 (166)
35 3hdu_A Putative thioesterase; 24.2 2.2E+02 0.0076 21.6 6.7 65 77-143 4-73 (157)
36 2yb5_A FUSC, putative fusidic 21.4 47 0.0016 28.5 2.4 52 126-177 32-84 (215)
37 2npb_A Selenoprotein W; struct 21.3 1.1E+02 0.0037 22.7 4.1 28 113-145 5-32 (96)
38 2g9o_A Copper-transporting ATP 20.9 59 0.002 22.3 2.5 54 112-173 4-64 (90)
39 2zzt_A Putative uncharacterize 20.7 2.2E+02 0.0077 20.5 5.8 21 130-150 59-79 (107)
40 1osd_A MERP, hypothetical prot 20.4 1.5E+02 0.0052 18.0 4.3 30 113-150 5-35 (72)
No 1
>2z51_A NIFU-like protein 2, chloroplast; CNFU, iron-sulfur cluster biosynthesis, metal transport; 1.35A {Arabidopsis thaliana} PDB: 2jnv_A
Probab=100.00 E-value=1.1e-49 Score=331.85 Aligned_cols=154 Identities=77% Similarity=1.154 Sum_probs=148.2
Q ss_pred CCCCcHHHHHHHHHHhcCccccCCCeEEEEEEeCcEEEEEEccCCCCCCCchHhHHHHHHHHHhhhcccceeeeeecccc
Q 038446 77 VLPLTEENVERVLDEVRPGLMADGGNVALHEIDGLVVVLKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQILDTE 156 (231)
Q Consensus 77 ~~~lt~e~V~~vL~~IRP~L~~dGGdVeLv~Ve~~~V~VrL~GaC~gCpss~~TLk~~IE~~L~e~iPei~~V~~v~~~~ 156 (231)
++|++.++|+++|++|||+|++|||||+|++|++++|||||+|+|++||++.+||+++||++|++++|++..|.++.+++
T Consensus 1 ~~~~~~e~v~~~L~~iRP~l~~dGGdvelv~v~~~~V~v~l~GaC~gC~ss~~Tlk~~Ie~~L~~~vpev~~V~~v~~~~ 80 (154)
T 2z51_A 1 MVPLTEENVESVLDEIRPYLMSDGGNVALHEIDGNVVRVKLQGACGSCPSSTMTMKMGIERRLMEKIPEIVAVEALPDEE 80 (154)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHHTTEEEEEEEEETTEEEEEEEHHHHTCHHHHHHHHHHHHHHHHHHCTTCCEEEECCSSC
T ss_pred CCcchHHHHHHHHHHhChHHHhcCCeEEEEEEECCEEEEEEECCCCCCCccHhHHHHHHHHHHHHhCCCceEEEEccCch
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred cccchhhHHHHHHHHhccceecccCCCcEEEEEEeCCEEEEEecCCCCCchhHHHHHHHHHHhhCCCcceEEeC
Q 038446 157 TGLELNEENIEKVLAEIRPYLAGTGGGILELIQIDDYVVRVRLSGPAAGVMTVRVALTQKLREKIPSIAAVQLI 230 (231)
Q Consensus 157 ~~~~lt~e~V~~vL~~IRP~L~~hdGGdvElV~v~~~vv~VrL~GaC~gC~Tlk~~Ie~~Lr~~iPei~~V~~v 230 (231)
+++++++++|+++|++|||||+++||||+||++|++++|+|||+|+|++|+|+|++||++||+++|+|++|+.+
T Consensus 81 e~l~L~~~~v~~~L~~iRP~L~~~dGGdvelv~v~~~~v~v~l~Gac~~~~Tlk~~Ie~~l~e~vP~i~~V~~~ 154 (154)
T 2z51_A 81 TGLELNEENIEKVLEEIRPYLIGTADGSLDLVEIEDPIVKIRITGPAAGVMTVRVAVTQKLREKIPSIAAVQLI 154 (154)
T ss_dssp CSCCSSHHHHHHHHHHHGGGCCGGGCCEEEEEEEETTEEEEEEESGGGGCHHHHHHHHHHHHHHCTTCCEEEEC
T ss_pred hhhHHHHHHHHHHHHHHHHHhhhcCCCCeEEEEEECCEEEEEEecCCcccHhHHHHHHHHHHHHCCCccEEEeC
Confidence 88899999999999999999997349999999999999999999999999999999999999999999999874
No 2
>1xhj_A Nitrogen fixation protein NIFU; alpha-beta, NIFU-like, structural genomics, protein structur initiative, NESG, PSI; NMR {Staphylococcus epidermidis} SCOP: d.52.8.1
Probab=99.91 E-value=8.1e-25 Score=167.05 Aligned_cols=74 Identities=45% Similarity=0.847 Sum_probs=71.2
Q ss_pred HHHHHHHHHHhcCccccCCCeEEEEEEeCcEEEEEEccCCCCCCCchHhHHHHHHHHHhhhcccceeeeeeccc
Q 038446 82 EENVERVLDEVRPGLMADGGNVALHEIDGLVVVLKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQILDT 155 (231)
Q Consensus 82 ~e~V~~vL~~IRP~L~~dGGdVeLv~Ve~~~V~VrL~GaC~gCpss~~TLk~~IE~~L~e~iPei~~V~~v~~~ 155 (231)
.++|+++|++|||+|++|||||+|++|++++|||||+|+|+|||+|.+||+++||++|++++|++..|.++.++
T Consensus 9 ~~~I~~~L~~IRP~L~~dGGdvelv~v~~g~V~V~L~GaC~gCpss~~TLk~gIE~~L~~~vPev~~V~~v~~~ 82 (88)
T 1xhj_A 9 FDQVAEVIERLRPFLLRDGGDCTLVDVEDGIVKLQLHGACGTCPSSTITLKAGIERALHEEVPGVIEVEQVFLE 82 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHSCEEEEEECCSSEEEEEEESSCCSSCHHHHHHHHHHHHHHHHHSTTCCEEEEEECC
T ss_pred HHHHHHHHHHhcHHHHhcCCeEEEEEEECCEEEEEEeecCCCCcchHHHHHHHHHHHHHHhCCCceEEEecccc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999987654
No 3
>1th5_A NIFU1; iron-sulfur cluster binding, structural genomics, program for RICE genome research, unknown function; NMR {Oryza sativa} SCOP: d.52.8.1
Probab=99.90 E-value=2.1e-24 Score=159.93 Aligned_cols=71 Identities=68% Similarity=0.996 Sum_probs=67.7
Q ss_pred chhhHHHHHHHHhccceecccCC-CcEEEEEEeCCEEEEEecCCCCCchhHHHHHHHHHHhhCCCcceEEeCC
Q 038446 160 ELNEENIEKVLAEIRPYLAGTGG-GILELIQIDDYVVRVRLSGPAAGVMTVRVALTQKLREKIPSIAAVQLID 231 (231)
Q Consensus 160 ~lt~e~V~~vL~~IRP~L~~hdG-GdvElV~v~~~vv~VrL~GaC~gC~Tlk~~Ie~~Lr~~iPei~~V~~v~ 231 (231)
+++.++|+++|++|||||++| | ||+||++|++++|+|||+|+|++|+|||++||++|++++|++++|+.++
T Consensus 3 ~~~~~~V~~~L~~iRP~L~~d-GGGdvelv~v~~g~V~v~l~GaC~gc~Tlk~gIe~~L~~~vpei~~V~~v~ 74 (74)
T 1th5_A 3 ELNEENVEKVLNEIRPYLAGT-GGGGLQFLMIKGPIVKVRLTGPAAVVRTVRIAVSKKLREKIPSIQIVQLLS 74 (74)
T ss_dssp CCSHHHHHHHHTTTHHHHTTT-TCCCCCCCEEETTEEEECCCSSSSSSSSHHHHHHHHHHHHCTTCSEEEECC
T ss_pred hHHHHHHHHHHHHHhHHHHhc-CCCcEEEEEEeCCEEEEEEecCCcchHHHHHHHHHHHHHHCCCCcEEEeCC
Confidence 567899999999999999996 7 9999999999999999999999999999999999999999999999874
No 4
>1veh_A NIFU-like protein hirip5; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.52.8.1
Probab=99.89 E-value=6.7e-24 Score=163.13 Aligned_cols=76 Identities=42% Similarity=0.685 Sum_probs=71.8
Q ss_pred cHHHHHHHHHH-hcCccccCCCeEEEEEEeCcEEEEEEccCCCCCCCchHhHHHHHHHHHhhhcccceeeeeecccc
Q 038446 81 TEENVERVLDE-VRPGLMADGGNVALHEIDGLVVVLKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQILDTE 156 (231)
Q Consensus 81 t~e~V~~vL~~-IRP~L~~dGGdVeLv~Ve~~~V~VrL~GaC~gCpss~~TLk~~IE~~L~e~iPei~~V~~v~~~~ 156 (231)
..++|+.+|++ |||+|++|||||+|++|++++|||||+|+|++||++.+||+++||++|++++|++..|+.+.+++
T Consensus 14 ~~~~I~~~L~~~IRP~L~~dGGdvelv~v~~g~V~v~l~GaC~gC~ss~~Tlk~gIE~~L~~~vpev~~V~~v~~~~ 90 (92)
T 1veh_A 14 VVAMIKELLDTRIRPTVQEDGGDVIYRGFEDGIVRLKLQGSCTSCPSSIITLKSGIQNMLQFYIPEVEGVEQVSGPS 90 (92)
T ss_dssp HHHHHHHHHHHTTHHHHHHHSCCCCEEEEETTEEEECCCCCCCCCHHHHHHTHHHHHHHHHHHCSSCCCEEECSCSC
T ss_pred HHHHHHHHHHHHhhHHHHhcCCeEEEEEEeCCEEEEEEeecCCCCCCcHHHHHHHHHHHHHHHCCCCCEEEEcCCCC
Confidence 36789999985 99999999999999999999999999999999999999999999999999999999999887665
No 5
>1xhj_A Nitrogen fixation protein NIFU; alpha-beta, NIFU-like, structural genomics, protein structur initiative, NESG, PSI; NMR {Staphylococcus epidermidis} SCOP: d.52.8.1
Probab=99.86 E-value=1.6e-22 Score=154.33 Aligned_cols=67 Identities=24% Similarity=0.579 Sum_probs=64.0
Q ss_pred hHHHHHHHHhccceecccCCCcEEEEEEeCCEEEEEecCCCCCch----hHHHHHHHHHHhhCCCcceEEeC
Q 038446 163 EENIEKVLAEIRPYLAGTGGGILELIQIDDYVVRVRLSGPAAGVM----TVRVALTQKLREKIPSIAAVQLI 230 (231)
Q Consensus 163 ~e~V~~vL~~IRP~L~~hdGGdvElV~v~~~vv~VrL~GaC~gC~----Tlk~~Ie~~Lr~~iPei~~V~~v 230 (231)
.++|+++|++|||+|++ ||||+||++|++++|+|||+|+|+||+ |||++||++|++++|+|+.|+.+
T Consensus 9 ~~~I~~~L~~IRP~L~~-dGGdvelv~v~~g~V~V~L~GaC~gCpss~~TLk~gIE~~L~~~vPev~~V~~v 79 (88)
T 1xhj_A 9 FDQVAEVIERLRPFLLR-DGGDCTLVDVEDGIVKLQLHGACGTCPSSTITLKAGIERALHEEVPGVIEVEQV 79 (88)
T ss_dssp HHHHHHHHHHHHHHHHH-HSCEEEEEECCSSEEEEEEESSCCSSCHHHHHHHHHHHHHHHHHSTTCCEEEEE
T ss_pred HHHHHHHHHHhcHHHHh-cCCeEEEEEEECCEEEEEEeecCCCCcchHHHHHHHHHHHHHHhCCCceEEEec
Confidence 68999999999999999 599999999999999999999999994 99999999999999999999875
No 6
>1th5_A NIFU1; iron-sulfur cluster binding, structural genomics, program for RICE genome research, unknown function; NMR {Oryza sativa} SCOP: d.52.8.1
Probab=99.85 E-value=3.8e-22 Score=147.82 Aligned_cols=71 Identities=39% Similarity=0.687 Sum_probs=67.7
Q ss_pred CCCcHHHHHHHHHHhcCccccCC-CeEEEEEEeCcEEEEEEccCCCCCCCchHhHHHHHHHHHhhhcccceeeeee
Q 038446 78 LPLTEENVERVLDEVRPGLMADG-GNVALHEIDGLVVVLKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQI 152 (231)
Q Consensus 78 ~~lt~e~V~~vL~~IRP~L~~dG-GdVeLv~Ve~~~V~VrL~GaC~gCpss~~TLk~~IE~~L~e~iPei~~V~~v 152 (231)
++++.++|+++|++|||+|++|| ||++|++|++++|+|||+|+|++| +||+++||++|++++|++.+|+++
T Consensus 2 ~~~~~~~V~~~L~~iRP~L~~dGGGdvelv~v~~g~V~v~l~GaC~gc----~Tlk~gIe~~L~~~vpei~~V~~v 73 (74)
T 1th5_A 2 LELNEENVEKVLNEIRPYLAGTGGGGLQFLMIKGPIVKVRLTGPAAVV----RTVRIAVSKKLREKIPSIQIVQLL 73 (74)
T ss_dssp CCCSHHHHHHHHTTTHHHHTTTTCCCCCCCEEETTEEEECCCSSSSSS----SSHHHHHHHHHHHHCTTCSEEEEC
T ss_pred hhHHHHHHHHHHHHHhHHHHhcCCCcEEEEEEeCCEEEEEEecCCcch----HHHHHHHHHHHHHHCCCCcEEEeC
Confidence 47889999999999999999999 999999999999999999999999 699999999999999999998865
No 7
>1veh_A NIFU-like protein hirip5; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.52.8.1
Probab=99.83 E-value=2.7e-21 Score=148.61 Aligned_cols=68 Identities=25% Similarity=0.427 Sum_probs=64.2
Q ss_pred hhHHHHHHHH-hccceecccCCCcEEEEEEeCCEEEEEecCCCCCch----hHHHHHHHHHHhhCCCcceEEeC
Q 038446 162 NEENIEKVLA-EIRPYLAGTGGGILELIQIDDYVVRVRLSGPAAGVM----TVRVALTQKLREKIPSIAAVQLI 230 (231)
Q Consensus 162 t~e~V~~vL~-~IRP~L~~hdGGdvElV~v~~~vv~VrL~GaC~gC~----Tlk~~Ie~~Lr~~iPei~~V~~v 230 (231)
..++|+++|+ +|||+|++| |||+||++|++++|+|||+|+|+||+ |||++||++|++++|++++|+.+
T Consensus 14 ~~~~I~~~L~~~IRP~L~~d-GGdvelv~v~~g~V~v~l~GaC~gC~ss~~Tlk~gIE~~L~~~vpev~~V~~v 86 (92)
T 1veh_A 14 VVAMIKELLDTRIRPTVQED-GGDVIYRGFEDGIVRLKLQGSCTSCPSSIITLKSGIQNMLQFYIPEVEGVEQV 86 (92)
T ss_dssp HHHHHHHHHHHTTHHHHHHH-SCCCCEEEEETTEEEECCCCCCCCCHHHHHHTHHHHHHHHHHHCSSCCCEEEC
T ss_pred HHHHHHHHHHHHhhHHHHhc-CCeEEEEEEeCCEEEEEEeecCCCCCCcHHHHHHHHHHHHHHHCCCCCEEEEc
Confidence 3688999998 699999995 99999999999999999999999994 99999999999999999999876
No 8
>2z51_A NIFU-like protein 2, chloroplast; CNFU, iron-sulfur cluster biosynthesis, metal transport; 1.35A {Arabidopsis thaliana} PDB: 2jnv_A
Probab=99.79 E-value=2.9e-19 Score=148.60 Aligned_cols=76 Identities=36% Similarity=0.632 Sum_probs=70.3
Q ss_pred ccCCCCCCCcHHHHHHHHHHhcCcccc-CCCeEEEEEEeCcEEEEEEccCCCCCCCchHhHHHHHHHHHhhhcccceeee
Q 038446 72 VSPCCVLPLTEENVERVLDEVRPGLMA-DGGNVALHEIDGLVVVLKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVE 150 (231)
Q Consensus 72 ~~p~~~~~lt~e~V~~vL~~IRP~L~~-dGGdVeLv~Ve~~~V~VrL~GaC~gCpss~~TLk~~IE~~L~e~iPei~~V~ 150 (231)
..|...+++++++|+++|++|||+|++ ||||+||++|++++|+|||+|+|++| +|++++||++|++++|++.+|+
T Consensus 77 ~~~~e~l~L~~~~v~~~L~~iRP~L~~~dGGdvelv~v~~~~v~v~l~Gac~~~----~Tlk~~Ie~~l~e~vP~i~~V~ 152 (154)
T 2z51_A 77 PDEETGLELNEENIEKVLEEIRPYLIGTADGSLDLVEIEDPIVKIRITGPAAGV----MTVRVAVTQKLREKIPSIAAVQ 152 (154)
T ss_dssp CSSCCSCCSSHHHHHHHHHHHGGGCCGGGCCEEEEEEEETTEEEEEEESGGGGC----HHHHHHHHHHHHHHCTTCCEEE
T ss_pred cCchhhhHHHHHHHHHHHHHHHHHhhhcCCCCeEEEEEECCEEEEEEecCCccc----HhHHHHHHHHHHHHCCCccEEE
Confidence 344556799999999999999999997 99999999999999999999999988 7999999999999999999987
Q ss_pred e
Q 038446 151 Q 151 (231)
Q Consensus 151 ~ 151 (231)
.
T Consensus 153 ~ 153 (154)
T 2z51_A 153 L 153 (154)
T ss_dssp E
T ss_pred e
Confidence 5
No 9
>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A*
Probab=97.06 E-value=0.0027 Score=48.12 Aligned_cols=66 Identities=20% Similarity=0.278 Sum_probs=55.8
Q ss_pred hhHHHHHHHHh-ccceecccCC---CcEEEEEEeCCEEEEEecCCCCCch---hHHHHHHHHHHhhCCCcceEEe
Q 038446 162 NEENIEKVLAE-IRPYLAGTGG---GILELIQIDDYVVRVRLSGPAAGVM---TVRVALTQKLREKIPSIAAVQL 229 (231)
Q Consensus 162 t~e~V~~vL~~-IRP~L~~hdG---GdvElV~v~~~vv~VrL~GaC~gC~---Tlk~~Ie~~Lr~~iPei~~V~~ 229 (231)
+++.|.++|+. +.|.+.. +- |-|.=+.++++.|+|.++-.+.+|+ +++..|+++|+ .+|++..|.+
T Consensus 7 ~~~~V~~aL~~V~DPel~~-~iv~lG~V~~v~v~~~~V~v~l~lt~~~cp~~~~l~~~i~~al~-~l~gv~~V~V 79 (103)
T 3cq1_A 7 LEAQAWALLEAVYDPELGL-DVVNLGLIYDLVVEPPRAYVRMTLTTPGCPLHDSLGEAVRQALS-RLPGVEEVEV 79 (103)
T ss_dssp HHHHHHHHHTTCBCTTTCS-BTTTTTCEEEEEEETTEEEEEECCSSSSCCSSCHHHHHHHHHHH-TSTTCCEEEE
T ss_pred HHHHHHHHHhCCCCCCCCc-CchhcCceEEEEEECCEEEEEEEECCCCCcHHHHHHHHHHHHHH-hCCCceeEEE
Confidence 46788888974 7788877 45 8888899999999999999999996 89999999997 5899988764
No 10
>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A*
Probab=97.05 E-value=0.0021 Score=48.66 Aligned_cols=68 Identities=21% Similarity=0.280 Sum_probs=58.1
Q ss_pred cHHHHHHHHHH-hcCccccCC---CeEEEEEEeCcEEEEEEccCCCCCCCchHhHHHHHHHHHhhhcccceeee
Q 038446 81 TEENVERVLDE-VRPGLMADG---GNVALHEIDGLVVVLKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVE 150 (231)
Q Consensus 81 t~e~V~~vL~~-IRP~L~~dG---GdVeLv~Ve~~~V~VrL~GaC~gCpss~~TLk~~IE~~L~e~iPei~~V~ 150 (231)
++++|..+|+. +-|.+..+- |-|.=++++++.|+|.+...+.+||. ...++..|+++|+ .+|.+.+|.
T Consensus 7 ~~~~V~~aL~~V~DPel~~~iv~lG~V~~v~v~~~~V~v~l~lt~~~cp~-~~~l~~~i~~al~-~l~gv~~V~ 78 (103)
T 3cq1_A 7 LEAQAWALLEAVYDPELGLDVVNLGLIYDLVVEPPRAYVRMTLTTPGCPL-HDSLGEAVRQALS-RLPGVEEVE 78 (103)
T ss_dssp HHHHHHHHHTTCBCTTTCSBTTTTTCEEEEEEETTEEEEEECCSSSSCCS-SCHHHHHHHHHHH-TSTTCCEEE
T ss_pred HHHHHHHHHhCCCCCCCCcCchhcCceEEEEEECCEEEEEEEECCCCCcH-HHHHHHHHHHHHH-hCCCceeEE
Confidence 57889999986 789888766 88988999999999999999999998 5688899999997 478776654
No 11
>1uwd_A Hypothetical protein TM0487; similar to PAAD protein, alpha/beta fold,structural genomics joint center for structural genomics, JCSG; NMR {Thermotoga maritima} SCOP: d.52.8.2 PDB: 1wcj_A
Probab=96.43 E-value=0.011 Score=44.63 Aligned_cols=69 Identities=26% Similarity=0.235 Sum_probs=56.0
Q ss_pred CcHHHHHHHHHHhc-CccccCC---CeEEEEEEeC-cEEEEEEccCCCCCCCchHhHHHHHHHHHhhhcccceeee
Q 038446 80 LTEENVERVLDEVR-PGLMADG---GNVALHEIDG-LVVVLKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVE 150 (231)
Q Consensus 80 lt~e~V~~vL~~IR-P~L~~dG---GdVeLv~Ve~-~~V~VrL~GaC~gCpss~~TLk~~IE~~L~e~iPei~~V~ 150 (231)
++.++|..+|+.|. |.+..+- |-|.=+++++ +.|+|.+.-.+.+||. ...++..|+++|++ +|.+.+|.
T Consensus 6 ~~~~~V~~aL~~V~DPel~~~iv~lG~V~~v~v~~~~~V~v~l~lt~~~cp~-~~~l~~~i~~al~~-l~gv~~v~ 79 (103)
T 1uwd_A 6 VTKEDVLNALKNVIDFELGLDVVSLGLVYDIQIDDQNNVKVLMTMTTPMCPL-AGMILSDAEEAIKK-IEGVNNVE 79 (103)
T ss_dssp CCHHHHHHHHTTCBCTTTSSBTTTTTCCCCEEECTTCEEEEEECCSSSCCSS-HHHHHHHHHHHHHT-SSSCCEEE
T ss_pred chHHHHHHHHcCCCCCCCCcChhhcCCeeEEEEcCCCEEEEEEEECCCCCcH-HHHHHHHHHHHHHh-CCCcceEE
Confidence 56889999998755 8887554 6677788886 8999999999999997 67888999999974 77776654
No 12
>1uwd_A Hypothetical protein TM0487; similar to PAAD protein, alpha/beta fold,structural genomics joint center for structural genomics, JCSG; NMR {Thermotoga maritima} SCOP: d.52.8.2 PDB: 1wcj_A
Probab=96.12 E-value=0.012 Score=44.31 Aligned_cols=66 Identities=21% Similarity=0.252 Sum_probs=52.1
Q ss_pred hhHHHHHHHHhcc-ceecccCC---CcEEEEEEeC-CEEEEEecCCCCCch---hHHHHHHHHHHhhCCCcceEEe
Q 038446 162 NEENIEKVLAEIR-PYLAGTGG---GILELIQIDD-YVVRVRLSGPAAGVM---TVRVALTQKLREKIPSIAAVQL 229 (231)
Q Consensus 162 t~e~V~~vL~~IR-P~L~~hdG---GdvElV~v~~-~vv~VrL~GaC~gC~---Tlk~~Ie~~Lr~~iPei~~V~~ 229 (231)
+.+.|.++|+.+. |.+.. +- |-|.=+.+++ +.|+|.++-...+|+ .++..|+++|+ .+|++..|.+
T Consensus 7 ~~~~V~~aL~~V~DPel~~-~iv~lG~V~~v~v~~~~~V~v~l~lt~~~cp~~~~l~~~i~~al~-~l~gv~~v~V 80 (103)
T 1uwd_A 7 TKEDVLNALKNVIDFELGL-DVVSLGLVYDIQIDDQNNVKVLMTMTTPMCPLAGMILSDAEEAIK-KIEGVNNVEV 80 (103)
T ss_dssp CHHHHHHHHTTCBCTTTSS-BTTTTTCCCCEEECTTCEEEEEECCSSSCCSSHHHHHHHHHHHHH-TSSSCCEEEE
T ss_pred hHHHHHHHHcCCCCCCCCc-ChhhcCCeeEEEEcCCCEEEEEEEECCCCCcHHHHHHHHHHHHHH-hCCCcceEEE
Confidence 4677888888544 87766 34 6677778885 899999999999995 88899999997 4899887764
No 13
>3lno_A Putative uncharacterized protein; alpha-beta fold, structural genomics, center for structural genomics of infectious diseases, csgid; 2.10A {Bacillus anthracis} SCOP: d.52.8.0
Probab=95.50 E-value=0.03 Score=42.74 Aligned_cols=69 Identities=14% Similarity=0.251 Sum_probs=53.8
Q ss_pred hhhHHHHHHHHh-ccceeccc--CCCcEEEEEEeC-CEEEEEecCCCCCch---hHHHHHHHHHHhhCCCcceEEe
Q 038446 161 LNEENIEKVLAE-IRPYLAGT--GGGILELIQIDD-YVVRVRLSGPAAGVM---TVRVALTQKLREKIPSIAAVQL 229 (231)
Q Consensus 161 lt~e~V~~vL~~-IRP~L~~h--dGGdvElV~v~~-~vv~VrL~GaC~gC~---Tlk~~Ie~~Lr~~iPei~~V~~ 229 (231)
.+.+.|.++|.. .-|.+... +-|-|.=+.+++ +.|.|.++=...+|+ .++..|+++|+..+|++..|.+
T Consensus 8 ~~~~~V~~aL~~V~DPe~~~~Iv~lG~V~~I~v~~~~~V~V~ltlt~p~cp~~~~i~~~i~~al~~~l~Gv~~V~V 83 (108)
T 3lno_A 8 AFENKLYANLEAVIDPELGVDIVNLGLVYDVTADENNNAVITMTMTSIGCPMAGQIVSDVKKVLSTNVPEVNEIEV 83 (108)
T ss_dssp HHHHHHHHHGGGCEETTTTEEHHHHTCEEEEEECTTCCEEEEECCSCTTCTTHHHHHHHHHHHHHHHCTTCCCEEE
T ss_pred hhHHHHHHHHcCCCCCCCCCCHHHcCCceEEEECCCCeEEEEEEECCCCCcHHHHHHHHHHHHHHHhCCCCceEEE
Confidence 456777888874 56766541 247788888885 899999999999995 8899999999777999988764
No 14
>3lno_A Putative uncharacterized protein; alpha-beta fold, structural genomics, center for structural genomics of infectious diseases, csgid; 2.10A {Bacillus anthracis} SCOP: d.52.8.0
Probab=94.84 E-value=0.05 Score=41.49 Aligned_cols=71 Identities=23% Similarity=0.281 Sum_probs=55.8
Q ss_pred CcHHHHHHHHHH-hcCccccC---CCeEEEEEEeC-cEEEEEEccCCCCCCCchHhHHHHHHHHHhhhcccceeeee
Q 038446 80 LTEENVERVLDE-VRPGLMAD---GGNVALHEIDG-LVVVLKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQ 151 (231)
Q Consensus 80 lt~e~V~~vL~~-IRP~L~~d---GGdVeLv~Ve~-~~V~VrL~GaC~gCpss~~TLk~~IE~~L~e~iPei~~V~~ 151 (231)
.+.++|..+|.. +-|.+..+ -|-|.=+.+++ +.|+|.+.-...+||.. ..++..|+++|+..+|.+.+|..
T Consensus 8 ~~~~~V~~aL~~V~DPe~~~~Iv~lG~V~~I~v~~~~~V~V~ltlt~p~cp~~-~~i~~~i~~al~~~l~Gv~~V~V 83 (108)
T 3lno_A 8 AFENKLYANLEAVIDPELGVDIVNLGLVYDVTADENNNAVITMTMTSIGCPMA-GQIVSDVKKVLSTNVPEVNEIEV 83 (108)
T ss_dssp HHHHHHHHHGGGCEETTTTEEHHHHTCEEEEEECTTCCEEEEECCSCTTCTTH-HHHHHHHHHHHHHHCTTCCCEEE
T ss_pred hhHHHHHHHHcCCCCCCCCCCHHHcCCceEEEECCCCeEEEEEEECCCCCcHH-HHHHHHHHHHHHHhCCCCceEEE
Confidence 356788888876 57776532 47788888885 89999999999999975 58889999999667898877653
No 15
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}
Probab=74.04 E-value=16 Score=26.83 Aligned_cols=96 Identities=20% Similarity=0.313 Sum_probs=50.4
Q ss_pred EEEEEcc-CCCCCCCchHhHHHHHHHHHhhhcccceeeeeecccc------cccchhhHHHHHHHHhccceecccCCCcE
Q 038446 113 VVLKLQG-ACGSCPSSTMTLKMGIETRLRDKIPEILEVEQILDTE------TGLELNEENIEKVLAEIRPYLAGTGGGIL 185 (231)
Q Consensus 113 V~VrL~G-aC~gCpss~~TLk~~IE~~L~e~iPei~~V~~v~~~~------~~~~lt~e~V~~vL~~IRP~L~~hdGGdv 185 (231)
+.+++.| .|.+|.. .|+..|.. ++.+..+....... +......+.+.+.++..-- ..
T Consensus 6 ~~~~v~gm~C~~C~~-------~ie~~l~~-~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~--------~~ 69 (149)
T 2ew9_A 6 CFLQIKGMTCASCVS-------NIERNLQK-EAGVLSVLVALMAGKAEIKYDPEVIQPLEIAQFIQDLGF--------EA 69 (149)
T ss_dssp EEEEEECCCSSSHHH-------HHHHHHHT-TSSCCCEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTC--------EE
T ss_pred EEEEECCeecHHHHH-------HHHHHHhc-CCCcEEEEEEecCCEEEEEEcCCCCCHHHHHHHHhcCCC--------ce
Confidence 4455655 6777755 68888876 77765544221110 0111233455566553211 11
Q ss_pred EEEEE---eCCEEEEEecCC-CCCchhHHHHHHHHHHhhCCCcceEE
Q 038446 186 ELIQI---DDYVVRVRLSGP-AAGVMTVRVALTQKLREKIPSIAAVQ 228 (231)
Q Consensus 186 ElV~v---~~~vv~VrL~Ga-C~gC~Tlk~~Ie~~Lr~~iPei~~V~ 228 (231)
.++.- ....+.+++.|- |.+|. ..||+.|.. +|.+..+.
T Consensus 70 ~~~~~~~~~~~~~~~~v~gm~C~~C~---~~ie~~l~~-~~gv~~~~ 112 (149)
T 2ew9_A 70 AVMEDYAGSDGNIELTITGMTCASCV---HNIESKLTR-TNGITYAS 112 (149)
T ss_dssp EECSCSCCSSSEEEEEEESCCSHHHH---HHHHHHHHH-SSSCCEEE
T ss_pred EeecccccccceeEEEEEeccCHHHH---HHHHHHHhc-CCCeEEEE
Confidence 11100 124677788775 77775 347777764 67776654
No 16
>1xg8_A Hypothetical protein SA0798; structural genomics, protein structure initative, MCSG, PSI, protein structure initiative; 2.10A {Staphylococcus aureus subsp} SCOP: c.47.1.17
Probab=73.82 E-value=3.4 Score=32.25 Aligned_cols=59 Identities=25% Similarity=0.349 Sum_probs=35.2
Q ss_pred CCCCC---CCchHhHHHHHHHHHhhhcccc-eeeeeecccccccchh---hHHHHHHHH--hccceecc
Q 038446 120 ACGSC---PSSTMTLKMGIETRLRDKIPEI-LEVEQILDTETGLELN---EENIEKVLA--EIRPYLAG 179 (231)
Q Consensus 120 aC~gC---pss~~TLk~~IE~~L~e~iPei-~~V~~v~~~~~~~~lt---~e~V~~vL~--~IRP~L~~ 179 (231)
-|.+| |+|-.|. .+++.+|.+++|+. -++.=+.-+.+...|+ .+-++++++ ..=|.+-.
T Consensus 18 iCASCVnaPSSkeTy-EWLqAal~RKyp~~~f~~~YIDI~~~~~~l~d~~~~~ae~I~ede~FYPlV~i 85 (111)
T 1xg8_A 18 ICASCVNAPTSKDIY-DWLQPLLKRKYPNISFKYTYIDITKDNDNLTDHDLQFIERIEQDELFYPLITM 85 (111)
T ss_dssp CCGGGSSSCCHHHHH-HHHHHHHHHHCTTSCEEEEEEETTTC---CCHHHHHHHHHHHTTSSCSSEEEE
T ss_pred cchhccCCCCchhHH-HHHHHHHhCcCCCCceEEEEEeccCCccchhHHHHHHHHHHhhccccceEEEE
Confidence 47777 7777665 89999999999983 2332221111112223 355677775 47777766
No 17
>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens}
Probab=66.14 E-value=15 Score=29.21 Aligned_cols=32 Identities=6% Similarity=0.267 Sum_probs=21.4
Q ss_pred CEEEEEecCC-CCCchhHHHHHHHHHHhhCCCcceEE
Q 038446 193 YVVRVRLSGP-AAGVMTVRVALTQKLREKIPSIAAVQ 228 (231)
Q Consensus 193 ~vv~VrL~Ga-C~gC~Tlk~~Ie~~Lr~~iPei~~V~ 228 (231)
..+.+++.|- |.+|.. .|++.|.. +|.+..|.
T Consensus 122 ~~~~l~v~Gm~C~~C~~---~ie~~l~~-~~GV~~~~ 154 (202)
T 2rop_A 122 STTLIAIAGMTCASCVH---SIEGMISQ-LEGVQQIS 154 (202)
T ss_dssp EEEEEEESCCCSTHHHH---HHHHHGGG-SSSEEEEE
T ss_pred eEEEEEECCccCHHHHH---HHHHHHHc-CCCeEEEE
Confidence 3577888884 777863 46777744 77776654
No 18
>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A {Methanocaldococcus jannaschii} PDB: 3prd_A
Probab=63.59 E-value=30 Score=29.71 Aligned_cols=105 Identities=16% Similarity=0.236 Sum_probs=70.6
Q ss_pred ccCCCeEEEEEEeCcEEEEEEccCCCCCCCchHhHHHHHHHHHhhhcc-cceeeeeecccccccchhhHHHHHHHHhccc
Q 038446 97 MADGGNVALHEIDGLVVVLKLQGACGSCPSSTMTLKMGIETRLRDKIP-EILEVEQILDTETGLELNEENIEKVLAEIRP 175 (231)
Q Consensus 97 ~~dGGdVeLv~Ve~~~V~VrL~GaC~gCpss~~TLk~~IE~~L~e~iP-ei~~V~~v~~~~~~~~lt~e~V~~vL~~IRP 175 (231)
..+|....+++|+++.|+|.+.- |-|..|| .|. ++.+|. +.++++++..++..-|
T Consensus 110 ~~~~~~g~V~~v~~~~V~vD~NH-----PLAGk~L----------~F~vev~~v~---------eat~eei~~~~~~~~~ 165 (231)
T 3prb_A 110 TIDGIPGKIVSINSGRVLVDFNH-----ELAGKEV----------KYRIKIEEVV---------DDKKNIVKEIVKMYVP 165 (231)
T ss_dssp EETTEEEEEEEEETTEEEEECSC-----TTTTCCE----------EEEEEEEEEC---------CSHHHHHHHHHHHHCT
T ss_pred EecCCCEEEEEEcCCEEEEeCCC-----ccCCCEE----------EEEEEEEEEe---------cCCHHHHHHHHHHhcC
Confidence 35566778999999999998842 3444443 121 222222 2346778888775444
Q ss_pred eecccCCCcEEEEEEeCCEEEEEecCCCCCc---hhHHHHHHHHHHhhCCCcceEEeCC
Q 038446 176 YLAGTGGGILELIQIDDYVVRVRLSGPAAGV---MTVRVALTQKLREKIPSIAAVQLID 231 (231)
Q Consensus 176 ~L~~hdGGdvElV~v~~~vv~VrL~GaC~gC---~Tlk~~Ie~~Lr~~iPei~~V~~v~ 231 (231)
.+ . ++ -+.+++++++|.+--.+..- +..|..|.+.|.++++++++|+.++
T Consensus 166 ~~-~----~~-~~~~~~~~~~i~~p~~~~~~~~~~~~k~~~~~~i~~~~~~~~~v~~~e 218 (231)
T 3prb_A 166 RL-S----DV-KVTIRNGTVKIELPEFAPFIPNIQTAKMAIANEILKRLEDAEKVSFVE 218 (231)
T ss_dssp TC-C----CC-EEEEETTEEEEECCTTGGGSTTHHHHHHHHHHHHHHHCTTCCEEEEEE
T ss_pred Cc-c----ce-EEEEeCCeEEEEcCHHHhhhhHHHHHHHHHHHHHHHhccccceEEEEE
Confidence 22 1 12 36778999999988766543 4788999999999999999998653
No 19
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A
Probab=62.01 E-value=31 Score=25.46 Aligned_cols=89 Identities=20% Similarity=0.414 Sum_probs=46.1
Q ss_pred EEEEcc-CCCCCCCchHhHHHHHHHHHhhhcccceeeeeecccc------cccchhhHHHHHHHHhccceecccCCCcEE
Q 038446 114 VLKLQG-ACGSCPSSTMTLKMGIETRLRDKIPEILEVEQILDTE------TGLELNEENIEKVLAEIRPYLAGTGGGILE 186 (231)
Q Consensus 114 ~VrL~G-aC~gCpss~~TLk~~IE~~L~e~iPei~~V~~v~~~~------~~~~lt~e~V~~vL~~IRP~L~~hdGGdvE 186 (231)
.+++.| .|.+|.. .|+..|.. +|.+..+....... +......+.+.+.++.. |-++
T Consensus 9 ~~~v~gm~C~~C~~-------~ie~~l~~-~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~--------G~~~- 71 (151)
T 1p6t_A 9 AMQVSGMTCAACAA-------RIEKGLKR-MPGVTDANVNLATETVNVIYDPAETGTAAIQEKIEKL--------GYHV- 71 (151)
T ss_dssp EEEEESCCSSHHHH-------HHHHHHTT-SSSEEEEEEEGGGTEEEEEECTTTSCHHHHHHHHHHH--------TCEE-
T ss_pred EEEECCCcCHHHHH-------HHHHHHhc-CCCeeEEEEEccCCEEEEEEcCCcCCHHHHHHHHHHc--------CCcc-
Confidence 455555 5666654 68888886 77765544211111 00112233444444322 1111
Q ss_pred EEEEeCCEEEEEecCC-CCCchhHHHHHHHHHHhhCCCcceE
Q 038446 187 LIQIDDYVVRVRLSGP-AAGVMTVRVALTQKLREKIPSIAAV 227 (231)
Q Consensus 187 lV~v~~~vv~VrL~Ga-C~gC~Tlk~~Ie~~Lr~~iPei~~V 227 (231)
....+.+++.|- |.+|.. .||+.|.. +|.+..+
T Consensus 72 ----~~~~~~~~v~gm~C~~C~~---~ie~~l~~-~~gv~~~ 105 (151)
T 1p6t_A 72 ----VTEKAEFDIEGMTCAACAN---RIEKRLNK-IEGVANA 105 (151)
T ss_dssp ----CCEEEEEEESSCCSSSHHH---HHHHHHTT-SSSEEEC
T ss_pred ----cccccEEEecCCCCHHHHH---HHHHHHhc-CCCceEE
Confidence 123567788774 888864 46666654 6776554
No 20
>1xg8_A Hypothetical protein SA0798; structural genomics, protein structure initative, MCSG, PSI, protein structure initiative; 2.10A {Staphylococcus aureus subsp} SCOP: c.47.1.17
Probab=55.26 E-value=9.3 Score=29.77 Aligned_cols=29 Identities=28% Similarity=0.299 Sum_probs=21.7
Q ss_pred EEEEecCC---CCCch-------hHHHHHHHHHHhhCCCc
Q 038446 195 VRVRLSGP---AAGVM-------TVRVALTQKLREKIPSI 224 (231)
Q Consensus 195 v~VrL~Ga---C~gC~-------Tlk~~Ie~~Lr~~iPei 224 (231)
+.|-.-|| |++|. |. ++++.+|+.|+|+.
T Consensus 8 v~i~VYGAe~iCASCVnaPSSkeTy-EWLqAal~RKyp~~ 46 (111)
T 1xg8_A 8 NAVVVYGADVICASCVNAPTSKDIY-DWLQPLLKRKYPNI 46 (111)
T ss_dssp EEEEEEECSSCCGGGSSSCCHHHHH-HHHHHHHHHHCTTS
T ss_pred EEEEEEcccccchhccCCCCchhHH-HHHHHHHhCcCCCC
Confidence 34444565 88883 55 89999999999973
No 21
>3ux2_A MIP18 family protein FAM96A; immune system, DUF59, 3D domain swapping, protein-protein interaction, alpha and beta protein (A+B); HET: MSE; 1.80A {Homo sapiens} PDB: 3ux3_A
Probab=53.83 E-value=15 Score=29.26 Aligned_cols=61 Identities=13% Similarity=0.300 Sum_probs=40.9
Q ss_pred CcEEEEEEccCCCCCCCchHhHHHHHHHHHhhhcccceeeeee--cc-cccccchh-----hHHHHHHHH
Q 038446 110 GLVVVLKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQI--LD-TETGLELN-----EENIEKVLA 171 (231)
Q Consensus 110 ~~~V~VrL~GaC~gCpss~~TLk~~IE~~L~e~iPei~~V~~v--~~-~~~~~~lt-----~e~V~~vL~ 171 (231)
++.|.|.++.-=.+||++ ..+...|+.+|.+.+|...+|... .+ |......+ .|+|.++|+
T Consensus 49 ~~~V~V~~TPT~p~Cp~a-~~I~l~Ir~kL~~~lp~~~kV~v~I~pgtH~~e~~vnKQl~DKERvaAAlE 117 (130)
T 3ux2_A 49 EYLVIIRFTPTVPHCSLA-TLIGLCLRVKLQRCLPFKHKLEIYISEGTHSTEEDINKQINDKERVAAAME 117 (130)
T ss_dssp EEEEEECCCCCCCSSCHH-HHHHHHHHHHHHHHCSSCCCCCCCCCCC------CHHHHHHCHHHHHHHHH
T ss_pred CCeEEEEEEeCCCCCCch-HHHHHHHHHHHHHhCCCceEEEEEECCCCCcCHHHHHHhhhhHHHHHHHhc
Confidence 467999999999999987 466689999999988886555422 11 22222222 477777775
No 22
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=43.45 E-value=21 Score=23.21 Aligned_cols=30 Identities=17% Similarity=0.632 Sum_probs=20.8
Q ss_pred EEEEEcc-CCCCCCCchHhHHHHHHHHHhhhcccceeee
Q 038446 113 VVLKLQG-ACGSCPSSTMTLKMGIETRLRDKIPEILEVE 150 (231)
Q Consensus 113 V~VrL~G-aC~gCpss~~TLk~~IE~~L~e~iPei~~V~ 150 (231)
+.++..| .|.+|.. .|+.+|+. +|.+..+.
T Consensus 4 ~~~~v~gm~C~~C~~-------~ie~~l~~-~~gv~~~~ 34 (74)
T 3dxs_X 4 IQVGVTGMTCAACSN-------SVEAALMN-VNGVFKAS 34 (74)
T ss_dssp EEEEEECCCSHHHHH-------HHHHHHHT-STTEEEEE
T ss_pred EEEEECCcCCHHHHH-------HHHHHHhc-CCCEEEEE
Confidence 4556666 7877776 78888875 67776554
No 23
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=41.25 E-value=34 Score=22.40 Aligned_cols=30 Identities=17% Similarity=0.278 Sum_probs=21.8
Q ss_pred EEEEEecC-CCCCchhHHHHHHHHHHhhCCCcceEE
Q 038446 194 VVRVRLSG-PAAGVMTVRVALTQKLREKIPSIAAVQ 228 (231)
Q Consensus 194 vv~VrL~G-aC~gC~Tlk~~Ie~~Lr~~iPei~~V~ 228 (231)
...+++.| .|.+|.. .|++.|++ |.+..|.
T Consensus 6 ~~~~~v~gm~C~~C~~---~ie~~l~~--~gv~~~~ 36 (73)
T 3fry_A 6 KIVLELSGLSCHHCVA---RVKKALEE--AGAKVEK 36 (73)
T ss_dssp EEEEEEESSBCGGGHH---HHHHHHHH--TTCEEEE
T ss_pred EEEEEECCCCCHHHHH---HHHHHhcc--CCcEEEE
Confidence 35677778 4888863 57888887 8887665
No 24
>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A {Methanocaldococcus jannaschii} PDB: 3prd_A
Probab=38.19 E-value=82 Score=26.92 Aligned_cols=68 Identities=18% Similarity=0.181 Sum_probs=51.2
Q ss_pred CCcHHHHHHHHHHhcCccccCCCeEEEEEEeCcEEEEEEccCCCCCCCchHhHHHHHHHHHhhhcccceeeeee
Q 038446 79 PLTEENVERVLDEVRPGLMADGGNVALHEIDGLVVVLKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQI 152 (231)
Q Consensus 79 ~lt~e~V~~vL~~IRP~L~~dGGdVeLv~Ve~~~V~VrL~GaC~gCpss~~TLk~~IE~~L~e~iPei~~V~~v 152 (231)
+-|+|++...++.--|.+ + ++ -+++++++++|.+...+.. ...|+..|..|.+.|.++++++.+|.-+
T Consensus 150 eat~eei~~~~~~~~~~~--~--~~-~~~~~~~~~~i~~p~~~~~-~~~~~~~k~~~~~~i~~~~~~~~~v~~~ 217 (231)
T 3prb_A 150 DDKKNIVKEIVKMYVPRL--S--DV-KVTIRNGTVKIELPEFAPF-IPNIQTAKMAIANEILKRLEDAEKVSFV 217 (231)
T ss_dssp CSHHHHHHHHHHHHCTTC--C--CC-EEEEETTEEEEECCTTGGG-STTHHHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred cCCHHHHHHHHHHhcCCc--c--ce-EEEEeCCeEEEEcCHHHhh-hhHHHHHHHHHHHHHHHhccccceEEEE
Confidence 345788888887655543 2 23 3577899999999876654 4778999999999999999887777543
No 25
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=36.21 E-value=32 Score=21.84 Aligned_cols=31 Identities=32% Similarity=0.733 Sum_probs=21.1
Q ss_pred EEEEEEcc-CCCCCCCchHhHHHHHHHHHhhhcccceeee
Q 038446 112 VVVLKLQG-ACGSCPSSTMTLKMGIETRLRDKIPEILEVE 150 (231)
Q Consensus 112 ~V~VrL~G-aC~gCpss~~TLk~~IE~~L~e~iPei~~V~ 150 (231)
.+.++..| .|.+|.. .|+.+|.. +|.+..+.
T Consensus 3 ~~~~~v~gm~C~~C~~-------~i~~~l~~-~~gv~~~~ 34 (69)
T 4a4j_A 3 TINLQLEGMDCTSCAS-------SIERAIAK-VPGVQSCQ 34 (69)
T ss_dssp EEEEEEESCCSHHHHH-------HHHHHHHT-STTEEEEE
T ss_pred EEEEEECCeecHHHHH-------HHHHHHhc-CCCeEEEE
Confidence 35566666 6777766 78888875 67766554
No 26
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A
Probab=32.24 E-value=1.1e+02 Score=20.14 Aligned_cols=31 Identities=29% Similarity=0.696 Sum_probs=21.1
Q ss_pred EEEEEEcc-CCCCCCCchHhHHHHHHHHHhhhcccceeee
Q 038446 112 VVVLKLQG-ACGSCPSSTMTLKMGIETRLRDKIPEILEVE 150 (231)
Q Consensus 112 ~V~VrL~G-aC~gCpss~~TLk~~IE~~L~e~iPei~~V~ 150 (231)
.+.++..| .|.+|.. .|+..|.. ++.+..+.
T Consensus 10 ~~~~~v~gm~C~~C~~-------~ie~~l~~-~~GV~~~~ 41 (84)
T 1q8l_A 10 VLKMKVEGMTCHSCTS-------TIEGKIGK-LQGVQRIK 41 (84)
T ss_dssp EEEEEECCTTTCSSCH-------HHHHHHHT-CTTEEEEE
T ss_pred EEEEEECCcccHHHHH-------HHHHHHHc-CCCeEEEE
Confidence 34566655 7999987 68888875 66665554
No 27
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid}
Probab=31.44 E-value=51 Score=27.11 Aligned_cols=103 Identities=14% Similarity=0.118 Sum_probs=55.9
Q ss_pred CCeEEEEEEeCcEEEEEEccCCCCCCCchHhHHHHHHHHHhhhcccceeeeeec-ccccccchhhHHHHHHHHhccceec
Q 038446 100 GGNVALHEIDGLVVVLKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIL-DTETGLELNEENIEKVLAEIRPYLA 178 (231)
Q Consensus 100 GGdVeLv~Ve~~~V~VrL~GaC~gCpss~~TLk~~IE~~L~e~iPei~~V~~v~-~~~~~~~lt~e~V~~vL~~IRP~L~ 178 (231)
||+.++.-++++.+. ....|+.....+...+...|.-.+.+..++.... ..++..++....++++++.++-.++
T Consensus 148 ggst~~~~~~~g~~~-----~~~~~~~Gg~~~~~~l~~~l~~~~~~ae~~k~~~~~~~~~~~~~~~~~~~i~~~i~~~l~ 222 (272)
T 3h1q_A 148 GGTTGIAVIEKGKIT-----ATFDEPTGGTHLSLVLAGSYKIPFEEAETIKKDFSRHREIMRVVRPVIEKMALIVKEVIK 222 (272)
T ss_dssp SSCEEEEEEETTEEE-----EECCBSCCHHHHHHHHHHHHTCCHHHHHHHHHSSTTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCcEEEEEEECCEEE-----EEecCCCcHHHHHHHHHHHhCCCHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555433 2367788887777777766642221111111100 0111222334455666666666666
Q ss_pred ccCCCcEEEEEEeCCEEEEEecCCCCCchhHHHHHHHHHH
Q 038446 179 GTGGGILELIQIDDYVVRVRLSGPAAGVMTVRVALTQKLR 218 (231)
Q Consensus 179 ~hdGGdvElV~v~~~vv~VrL~GaC~gC~Tlk~~Ie~~Lr 218 (231)
.. + ++ + .|-|.|..+..+.+++.+++.+.
T Consensus 223 ~~-~-~~-----~----~ivL~GG~a~~~~l~~~l~~~l~ 251 (272)
T 3h1q_A 223 NY-D-QT-----L----PVYVVGGTAYLTGFSEEFSRFLG 251 (272)
T ss_dssp TS-C-SS-----C----CEEEESGGGGSTTHHHHHHHHHS
T ss_pred hc-C-CC-----C----EEEEECCccchhhHHHHHHHHhC
Confidence 63 2 11 1 57788888877888888887774
No 28
>1sh8_A Hypothetical protein PA5026; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.50A {Pseudomonas aeruginosa} SCOP: d.38.1.5
Probab=29.31 E-value=58 Score=24.58 Aligned_cols=44 Identities=20% Similarity=0.261 Sum_probs=34.0
Q ss_pred CCCCcHHHHHHHHHHhcCccccCCCeEEEEEEeCcEEEEEEccCCC
Q 038446 77 VLPLTEENVERVLDEVRPGLMADGGNVALHEIDGLVVVLKLQGACG 122 (231)
Q Consensus 77 ~~~lt~e~V~~vL~~IRP~L~~dGGdVeLv~Ve~~~V~VrL~GaC~ 122 (231)
++|++.+.++..+..--|+.+..| +++++++++.+.+++.-.-.
T Consensus 2 ~~~~~~~~~~~~~~~~~p~~~~lg--~~~~~~~~~~~~~~~~~~~~ 45 (154)
T 1sh8_A 2 HMPLPTELARHLTEEKIAFVQRSG--LRAEVLEPGYVRLRMPGAGN 45 (154)
T ss_dssp CCSSCHHHHHHHHHHSSHHHHHHT--CEEEEEETTEEEEEECSTTC
T ss_pred CCCcCHHHHHHHhhccCCchhhcc--eEEEEEeCCeEEEEccCCcc
Confidence 678999999999987678888775 56677888888888844433
No 29
>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} SCOP: d.58.17.1 PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A
Probab=29.06 E-value=36 Score=22.00 Aligned_cols=29 Identities=14% Similarity=0.475 Sum_probs=19.7
Q ss_pred EEEEEccCCCCCCCchHhHHHHHHHHHhhhcccceeee
Q 038446 113 VVLKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVE 150 (231)
Q Consensus 113 V~VrL~GaC~gCpss~~TLk~~IE~~L~e~iPei~~V~ 150 (231)
..++.+=.|.+|.. .|+.+|.+ +|.+ .+.
T Consensus 4 ~~~~vgm~C~~C~~-------~i~~~l~~-~~gV-~v~ 32 (68)
T 3iwl_A 4 HEFSVDMTCGGCAE-------AVSRVLNK-LGGV-KYD 32 (68)
T ss_dssp EEEEECCCSHHHHH-------HHHHHHHH-HCSE-EEE
T ss_pred EEEEECcCcHHHHH-------HHHHHHHc-CCCe-EEE
Confidence 44556447888876 78888876 6666 654
No 30
>2qwz_A Phenylacetic acid degradation-related protein; putative thioesterase, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}
Probab=28.19 E-value=1.3e+02 Score=23.07 Aligned_cols=43 Identities=16% Similarity=0.309 Sum_probs=32.8
Q ss_pred CCCCCCCcHHHHHHHHHHhcCccccCCCeEEEEEEeCcEEEEEEcc
Q 038446 74 PCCVLPLTEENVERVLDEVRPGLMADGGNVALHEIDGLVVVLKLQG 119 (231)
Q Consensus 74 p~~~~~lt~e~V~~vL~~IRP~L~~dGGdVeLv~Ve~~~V~VrL~G 119 (231)
.+...+++.+++++.++.--|... -++++++++++.+.+++.-
T Consensus 18 ~~~~~~~~~~~~~~~l~~~~p~~~---lg~~v~~~~~g~~~~~~~v 60 (159)
T 2qwz_A 18 QGMELVFDKDGLSAYLEEVFPQIQ---GEFSIDALAKGEITMRLNV 60 (159)
T ss_dssp SCCCCSSCHHHHHHHHHHHCGGGT---TTEEEEEECSSEEEEEECG
T ss_pred cCCCCcCCHHHHHHHHHhhCcccc---CCeEEEEecCCEEEEEEEC
Confidence 456667889999999987666654 3788899998888887743
No 31
>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A
Probab=28.06 E-value=95 Score=23.72 Aligned_cols=34 Identities=24% Similarity=0.357 Sum_probs=22.7
Q ss_pred cCCCeEEEEEEeCcEEEEEE-ccCCCCCCCchHhH
Q 038446 98 ADGGNVALHEIDGLVVVLKL-QGACGSCPSSTMTL 131 (231)
Q Consensus 98 ~dGGdVeLv~Ve~~~V~VrL-~GaC~gCpss~~TL 131 (231)
.+|..+.+-++.|..+.|-| ..-|..|+.....|
T Consensus 26 ~~G~~v~l~~~~Gk~vlv~F~atwC~~C~~~~p~l 60 (180)
T 3kij_A 26 AKGRTVSLEKYKGKVSLVVNVASDCQLTDRNYLGL 60 (180)
T ss_dssp TTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHH
T ss_pred CCCCEecHHHcCCCEEEEEEEecCCCCcHHHHHHH
Confidence 36667777777777777766 45688887654444
No 32
>3gr0_A Protein PRGH; type III secretion system, inner membrane protein, cell MEMB membrane, transmembrane, virulence, membrane protein; 2.30A {Salmonella typhimurium} PDB: 2y9j_A
Probab=26.55 E-value=2.8e+02 Score=23.18 Aligned_cols=109 Identities=18% Similarity=0.142 Sum_probs=71.8
Q ss_pred HhcCccccCCCeEEEEEEeCcEEEEEEccCCCCCCCchHhHHHHHHHHHhhhcccceeeeeecccccccchhhHHHHHHH
Q 038446 91 EVRPGLMADGGNVALHEIDGLVVVLKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQILDTETGLELNEENIEKVL 170 (231)
Q Consensus 91 ~IRP~L~~dGGdVeLv~Ve~~~V~VrL~GaC~gCpss~~TLk~~IE~~L~e~iPei~~V~~v~~~~~~~~lt~e~V~~vL 170 (231)
.+.-.|+...+-+.++.=.++.+||-.. ....+.=.-+..+++..++-..|....+ -+++|+..|
T Consensus 7 ~L~~lL~g~~~p~~Il~grD~~iyVla~--------~qrd~~W~rQ~L~k~~~~e~~~Vi~~~~-------e~~~i~~~L 71 (197)
T 3gr0_A 7 ELDSLLGQEKERFQVLPGRDKMLYVAAQ--------NERDTLWARQVLARGDYDKNARVINENE-------ENKRISIWL 71 (197)
T ss_dssp -----CGGGTTTCEEEECTTSCEEEECS--------SHHHHHHHHHHHHHHTCTTTEEEECHHH-------HHHHHHHHH
T ss_pred HHHHHhcCCCCCeEEEeCCCCcEEEEEc--------cccHHHHHHHHHHhcCCCCCcEEeehHH-------HHHHHHHHH
Confidence 3445566667777887777788888543 3455544556666777778777765321 157889999
Q ss_pred HhccceecccCCCcEEEEEEeCCEEEEEecCCCCCc-----------hhHHHHHHHHHHhhCCCcceEEe
Q 038446 171 AEIRPYLAGTGGGILELIQIDDYVVRVRLSGPAAGV-----------MTVRVALTQKLREKIPSIAAVQL 229 (231)
Q Consensus 171 ~~IRP~L~~hdGGdvElV~v~~~vv~VrL~GaC~gC-----------~Tlk~~Ie~~Lr~~iPei~~V~~ 229 (231)
.+.-|.|+-| +|+|.-+|.-- ..-+..+.+.|+..+|-.+.|..
T Consensus 72 ~~~~P~l~~~---------------~i~l~~P~~P~l~ls~~r~~l~~~~~~~L~~~l~~~~pya~~v~i 126 (197)
T 3gr0_A 72 DTYYPQLAYY---------------RIHFDEPRKPVFWLSRQRNTMSKKELEVLSQKLRALMPYADSVNI 126 (197)
T ss_dssp HHHSTTCCEE---------------EEECSSTTSCEEEEESSSCCCCHHHHHHHHHHHHHHCTTCSCCEE
T ss_pred HhcCCceeEE---------------EEecCCCCCCEEEEEeccccCCHHHHHHHHHHHHHhCCccceeEE
Confidence 9999999875 34444444421 35668899999999998887765
No 33
>3gr1_A Protein PRGH; type III secretion system, inner membrane protein, cell membrane, membrane, transmembrane, virulence; 2.80A {Salmonella typhimurium}
Probab=25.14 E-value=2.9e+02 Score=23.69 Aligned_cols=106 Identities=19% Similarity=0.130 Sum_probs=71.1
Q ss_pred CccccCCCeEEEEEEeCcEEEEEEccCCCCCCCchHhHHHHHHHHHhhhcccceeeeeecccccccchhhHHHHHHHHhc
Q 038446 94 PGLMADGGNVALHEIDGLVVVLKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQILDTETGLELNEENIEKVLAEI 173 (231)
Q Consensus 94 P~L~~dGGdVeLv~Ve~~~V~VrL~GaC~gCpss~~TLk~~IE~~L~e~iPei~~V~~v~~~~~~~~lt~e~V~~vL~~I 173 (231)
-.|+...+-+.++.=.++.+||-.. ....+.=.-+..+++..++-..|.... .+ +++|+..|.+.
T Consensus 10 ~lL~g~~~p~~il~grd~~~yVla~--------~qrd~~W~rq~L~k~~~~~~~~V~~~~-~~------~~~i~~~l~~~ 74 (227)
T 3gr1_A 10 SLLGQEKERFQVLPGRDKMLYVAAQ--------NERDTLWARQVLARGDYDKNARVINEN-EE------NKRISIWLDTY 74 (227)
T ss_dssp HHTCSCSCSCEEEECTTSCEEEECS--------SHHHHHHHHHHHHHTTCTTTEEEECHH-HH------HHHHHHHHHHH
T ss_pred HHhcCCCCCeEEEeCCCCcEEEEEc--------cccHHHHHHHHHHhcCCcCCeEEEehH-HH------HHHHHHHHHhc
Confidence 3455566667777767788888543 345554455666677667766666321 11 57889999999
Q ss_pred cceecccCCCcEEEEEEeCCEEEEEecCCCCCc-----------hhHHHHHHHHHHhhCCCcceEEe
Q 038446 174 RPYLAGTGGGILELIQIDDYVVRVRLSGPAAGV-----------MTVRVALTQKLREKIPSIAAVQL 229 (231)
Q Consensus 174 RP~L~~hdGGdvElV~v~~~vv~VrL~GaC~gC-----------~Tlk~~Ie~~Lr~~iPei~~V~~ 229 (231)
-|.|+-| +|+|.-+|.-- ..-+..+.++|++.+|-.+.|.+
T Consensus 75 ~P~l~~~---------------~i~l~~P~~Pvl~l~~~r~~~~~~~~~~L~~~l~~~~Pya~~v~I 126 (227)
T 3gr1_A 75 YPQLAYY---------------RIHFDEPRKPVFWLSRQRNTMSKKELEVLSQKLRALMPYADSVNI 126 (227)
T ss_dssp CTTCCEE---------------EEECSSTTSCEEEEETTTCCCCHHHHHHHHHHHHHHCTTCSCCEE
T ss_pred CCceEEE---------------EEEcCCCCCCEEEEEeccccCCHHHHHHHHHHHHHhCCccccceE
Confidence 9999875 34444444421 25668899999999998887765
No 34
>2qzb_A Uncharacterized protein YFEY; structural genomics, unknown function, PSI-2, protein struct initiative; 2.10A {Escherichia coli}
Probab=24.55 E-value=65 Score=26.66 Aligned_cols=105 Identities=19% Similarity=0.337 Sum_probs=60.0
Q ss_pred CCCCCcHHHHHHHHH---HhcCccccCCCeEE-EE-EEeCcEEEEEEccCCCCCCCchHhHHHHHHHHHhhhcccceeee
Q 038446 76 CVLPLTEENVERVLD---EVRPGLMADGGNVA-LH-EIDGLVVVLKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVE 150 (231)
Q Consensus 76 ~~~~lt~e~V~~vL~---~IRP~L~~dGGdVe-Lv-~Ve~~~V~VrL~GaC~gCpss~~TLk~~IE~~L~e~iPei~~V~ 150 (231)
...||.++.|+..|+ .+|...+.++|++- +. .++++.|.+-+.|. .. .+ .+|+
T Consensus 26 a~T~~~~~aI~~~L~g~y~lrsGm~t~~G~~v~~~qA~~~d~v~lvi~G~-----~g--------------~V---~rI~ 83 (166)
T 2qzb_A 26 ASTPLQEQAIADALDGDYRLRSGMKTANGNVVRFFEVMKGDNVAMVINGD-----QG--------------TI---SRID 83 (166)
T ss_dssp TTSBSSHHHHHHHCCSSCEEEEEEEEETTEEEEEEEEEETTEEEEEEEC-------C--------------BC---CEEE
T ss_pred cCCcCCHHHHHhhcCCCcEEeeceecCCCCEEEeeeeecCCcEEEEEECC-----CC--------------cE---EEEE
Confidence 456899999999997 49999999999754 33 56788888888882 10 12 2222
Q ss_pred eeccc-------ccccchhhHHH-HHHHHhccceecccCCCcEEEEEEeCCEEEEEecCCCCC
Q 038446 151 QILDT-------ETGLELNEENI-EKVLAEIRPYLAGTGGGILELIQIDDYVVRVRLSGPAAG 205 (231)
Q Consensus 151 ~v~~~-------~~~~~lt~e~V-~~vL~~IRP~L~~hdGGdvElV~v~~~vv~VrL~GaC~g 205 (231)
....+ .-+.+.. .+ .++...=||--.. +.+.|+=+.=+...|.+.|+|.=.|
T Consensus 84 V~d~~i~t~~G~kIGtpFs--~ly~ka~g~C~~g~~~-~~~~V~C~ap~s~~VsYvF~g~W~G 143 (166)
T 2qzb_A 84 VLDSDIPADTGVKIGTPFS--DLYSKAFGNCQKADGD-DNRAVECKAEGSQHISYQFSGEWRG 143 (166)
T ss_dssp ECCTTCCBTTSCCTTCBHH--HHCSCCTTTEEEC-------CEEEECTTCSSEEEEEECCCCS
T ss_pred EeCCCCCCCCccccCcchH--HhhhhhcccceecCCC-CcCceEEECCCCCeEEEEEeccccC
Confidence 11111 1122222 22 1233344444444 5666776666667788888886655
No 35
>3hdu_A Putative thioesterase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 2.50A {Syntrophus aciditrophicus SB}
Probab=24.20 E-value=2.2e+02 Score=21.62 Aligned_cols=65 Identities=17% Similarity=0.015 Sum_probs=41.2
Q ss_pred CCCCcHHHHHHHHH----HhcCccccCCCeEEEEEEeCcEEEEEEccCCCCCCC-chHhHHHHHHHHHhhhc
Q 038446 77 VLPLTEENVERVLD----EVRPGLMADGGNVALHEIDGLVVVLKLQGACGSCPS-STMTLKMGIETRLRDKI 143 (231)
Q Consensus 77 ~~~lt~e~V~~vL~----~IRP~L~~dGGdVeLv~Ve~~~V~VrL~GaC~gCps-s~~TLk~~IE~~L~e~i 143 (231)
.+.++++++.+.|. +--|+.+.-| +++.+++++.+.+++.-.=..|.. ...++..++-..|.+..
T Consensus 4 ~~~~~~~~~~~~l~~~~~~~~p~~~~lG--~~~~~~~~g~~~~~~~~~~~~~~Np~~G~~HGG~iatl~D~a 73 (157)
T 3hdu_A 4 NFSKNEEVLFSAVNEIFEEKIPFNKIIG--LKVRFISPEQVKLSFEMRDELIGNAIRRMLYGGVISSAIDMT 73 (157)
T ss_dssp --CHHHHHHHHHHHHHHHTSCGGGGTEE--EEEEEECSSEEEEEEEESSCCTTCTTHHHHHHHHHHHHHHHH
T ss_pred ccccChHHHHHHHHHHhhcCCcHHHhcC--CEEEEecCCEEEEEEECCHHHhCCCCCCeEcHHHHHHHHHHH
Confidence 34566655555553 3447766664 888899999888888665455532 24677777777776654
No 36
>2yb5_A FUSC, putative fusidic acid resistance protein; translation, antibiotic resistance, zinc finger; 2.10A {Staphylococcus aureus}
Probab=21.37 E-value=47 Score=28.50 Aligned_cols=52 Identities=19% Similarity=0.280 Sum_probs=27.0
Q ss_pred CchHhHHHHHHHHHhhhccccee-eeeecccccccchhhHHHHHHHHhcccee
Q 038446 126 SSTMTLKMGIETRLRDKIPEILE-VEQILDTETGLELNEENIEKVLAEIRPYL 177 (231)
Q Consensus 126 ss~~TLk~~IE~~L~e~iPei~~-V~~v~~~~~~~~lt~e~V~~vL~~IRP~L 177 (231)
..-.+++..+...+.+.||+... ....-+.-....|+.+.++..|+++.||+
T Consensus 32 ~vi~a~k~~~~~kI~~~f~~~~~e~~~lL~~i~~~~l~~~~~e~~L~~Lk~yV 84 (215)
T 2yb5_A 32 NSHKTQKDFLLNEINDIFKEKDIDISDFITSIDDVKLTKKKAEHLLNELKVYI 84 (215)
T ss_dssp TTTHHHHHHHHHHHHHHHHTTTCCCTTHHHHHCCTTCCHHHHHHHHHHHGGGB
T ss_pred HHHHHHHHHHHHHHHHHcccCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHh
Confidence 44567778888888888876543 11111111122334455555555555444
No 37
>2npb_A Selenoprotein W; structure, thioredoxin-like fold, oxidoreductase; NMR {Mus musculus}
Probab=21.34 E-value=1.1e+02 Score=22.73 Aligned_cols=28 Identities=18% Similarity=0.406 Sum_probs=20.3
Q ss_pred EEEEEccCCCCCCCchHhHHHHHHHHHhhhccc
Q 038446 113 VVLKLQGACGSCPSSTMTLKMGIETRLRDKIPE 145 (231)
Q Consensus 113 V~VrL~GaC~gCpss~~TLk~~IE~~L~e~iPe 145 (231)
|.|.| |..|. |..--....+.|...||+
T Consensus 5 V~I~Y---C~~C~--y~~ra~~laqeLl~~Fp~ 32 (96)
T 2npb_A 5 VRVVY---SGACG--YKPKYLQLKEKLEHEFPG 32 (96)
T ss_dssp EEEEC---CCCSC--HHHHHHHHHHHHHHHSBT
T ss_pred EEEEE---cCCCC--CHHHHHHHHHHHHHhCCc
Confidence 44444 66774 555666889999999998
No 38
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A
Probab=20.94 E-value=59 Score=22.26 Aligned_cols=54 Identities=20% Similarity=0.441 Sum_probs=29.0
Q ss_pred EEEEEEcc-CCCCCCCchHhHHHHHHHHHhhhcccceeeeeecccc------cccchhhHHHHHHHHhc
Q 038446 112 VVVLKLQG-ACGSCPSSTMTLKMGIETRLRDKIPEILEVEQILDTE------TGLELNEENIEKVLAEI 173 (231)
Q Consensus 112 ~V~VrL~G-aC~gCpss~~TLk~~IE~~L~e~iPei~~V~~v~~~~------~~~~lt~e~V~~vL~~I 173 (231)
.+.++..| .|.+|.. .|+.+|.. +|.+..+....... +....+.+.+.+.++.+
T Consensus 4 ~~~l~v~Gm~C~~C~~-------~Ie~~L~~-~~GV~~v~v~l~~~~~~V~~~~~~~~~~~i~~~i~~~ 64 (90)
T 2g9o_A 4 TATFIIDGMHCKSCVS-------NIESTLSA-LQYVSSIVVSLENRSAIVVYNASSVTPESLRKAIEAV 64 (90)
T ss_dssp EEEEEEESCCHHHHHH-------HHHHHHTT-CTTEEEEEEETTTTEEEEEECCSSCCTHHHHHHHHTT
T ss_pred EEEEEECCcCCHHHHH-------HHHHHHHc-CCCeeEEEEEccCCEEEEEECCCCCCHHHHHHHHHhc
Confidence 34555655 6766654 78888865 67766554322111 11123345666666654
No 39
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima}
Probab=20.75 E-value=2.2e+02 Score=20.54 Aligned_cols=21 Identities=19% Similarity=0.319 Sum_probs=16.6
Q ss_pred hHHHHHHHHHhhhcccceeee
Q 038446 130 TLKMGIETRLRDKIPEILEVE 150 (231)
Q Consensus 130 TLk~~IE~~L~e~iPei~~V~ 150 (231)
.+...|+..|++.+|.+..|.
T Consensus 59 ~i~~~ie~~L~~~~~~i~~vt 79 (107)
T 2zzt_A 59 ELTVKIRKEMLKRRDDIEDVT 79 (107)
T ss_dssp HHHHHHHHHHHHHCTTCCEEE
T ss_pred HHHHHHHHHHHHHCCCCcEEE
Confidence 577899999999999765543
No 40
>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A
Probab=20.38 E-value=1.5e+02 Score=18.05 Aligned_cols=30 Identities=23% Similarity=0.695 Sum_probs=18.6
Q ss_pred EEEEEcc-CCCCCCCchHhHHHHHHHHHhhhcccceeee
Q 038446 113 VVLKLQG-ACGSCPSSTMTLKMGIETRLRDKIPEILEVE 150 (231)
Q Consensus 113 V~VrL~G-aC~gCpss~~TLk~~IE~~L~e~iPei~~V~ 150 (231)
..++..| .|.+|.. .|+..|.. +|.+..+.
T Consensus 5 ~~~~v~gm~C~~C~~-------~i~~~l~~-~~gv~~~~ 35 (72)
T 1osd_A 5 VTLSVPGMTCSACPI-------TVKKAISK-VEGVSKVD 35 (72)
T ss_dssp EEEECTTCCSTTHHH-------HHHHHHHT-STTEEEEE
T ss_pred EEEEECCeEcHHHHH-------HHHHHHhc-CCCeEEEE
Confidence 3455554 5777755 67877775 66665544
Done!