Query 038448
Match_columns 385
No_of_seqs 346 out of 2233
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 11:10:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038448.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038448hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 3.6E-47 7.7E-52 390.6 29.9 347 21-381 23-497 (889)
2 PLN03210 Resistant to P. syrin 100.0 1.4E-27 3.1E-32 257.2 24.7 234 139-383 190-506 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 1.1E-28 2.5E-33 228.2 12.0 183 139-326 2-207 (287)
4 PRK04841 transcriptional regul 99.1 7.6E-09 1.6E-13 110.7 21.1 208 159-379 31-332 (903)
5 PRK06893 DNA replication initi 98.7 8.5E-08 1.8E-12 85.5 10.2 154 161-323 40-205 (229)
6 TIGR03015 pepcterm_ATPase puta 98.7 7.5E-07 1.6E-11 81.5 16.6 163 160-326 43-243 (269)
7 PF05729 NACHT: NACHT domain 98.6 2E-07 4.3E-12 78.4 8.6 127 161-287 1-162 (166)
8 COG2909 MalT ATP-dependent tra 98.5 2.8E-06 6.1E-11 85.8 14.8 224 143-381 25-340 (894)
9 PRK00411 cdc6 cell division co 98.4 1E-05 2.2E-10 78.3 15.5 164 159-323 54-257 (394)
10 TIGR03420 DnaA_homol_Hda DnaA 98.4 3.2E-06 7E-11 75.1 11.0 158 159-325 37-205 (226)
11 PF13173 AAA_14: AAA domain 98.4 9.2E-07 2E-11 71.3 6.6 115 160-279 2-126 (128)
12 PRK00080 ruvB Holliday junctio 98.4 4.6E-06 1E-10 78.6 12.2 157 159-326 50-227 (328)
13 TIGR00635 ruvB Holliday juncti 98.3 4.3E-06 9.4E-11 78.0 11.0 175 139-325 10-205 (305)
14 PRK08727 hypothetical protein; 98.2 7.4E-06 1.6E-10 73.2 9.9 149 161-318 42-201 (233)
15 PRK08084 DNA replication initi 98.2 2.3E-05 4.9E-10 70.2 12.9 153 160-321 45-209 (235)
16 PF01637 Arch_ATPase: Archaeal 98.2 6.6E-06 1.4E-10 73.1 9.2 68 250-320 158-233 (234)
17 COG2256 MGS1 ATPase related to 98.1 1.5E-05 3.3E-10 74.2 9.4 153 158-318 46-209 (436)
18 cd01128 rho_factor Transcripti 98.1 5.8E-06 1.3E-10 74.2 6.4 55 160-215 16-72 (249)
19 TIGR02928 orc1/cdc6 family rep 98.1 0.00013 2.8E-09 69.8 15.4 58 159-216 39-100 (365)
20 PRK09376 rho transcription ter 98.0 4.6E-06 9.9E-11 78.4 4.7 51 161-212 170-222 (416)
21 PRK05564 DNA polymerase III su 98.0 0.00017 3.6E-09 67.6 15.0 164 142-319 13-188 (313)
22 PRK05642 DNA replication initi 98.0 3.4E-05 7.4E-10 69.0 9.6 152 160-320 45-207 (234)
23 PRK13342 recombination factor 98.0 9.8E-05 2.1E-09 71.8 12.6 155 159-324 35-199 (413)
24 PRK09087 hypothetical protein; 98.0 6.7E-05 1.5E-09 66.6 10.2 145 161-325 45-199 (226)
25 PRK08118 topology modulation p 97.7 1.6E-05 3.5E-10 67.1 2.4 35 161-195 2-37 (167)
26 PRK14961 DNA polymerase III su 97.7 0.00069 1.5E-08 64.7 13.5 155 160-319 38-218 (363)
27 PF00308 Bac_DnaA: Bacterial d 97.7 0.00017 3.6E-09 63.8 8.4 150 159-320 33-207 (219)
28 PF05496 RuvB_N: Holliday junc 97.7 0.00061 1.3E-08 59.4 11.5 155 158-326 48-226 (233)
29 PRK12402 replication factor C 97.7 0.00058 1.3E-08 64.5 12.6 156 160-320 36-225 (337)
30 COG3903 Predicted ATPase [Gene 97.7 0.00011 2.4E-09 68.9 7.2 163 158-326 12-194 (414)
31 cd00009 AAA The AAA+ (ATPases 97.6 0.00048 1.1E-08 55.9 9.4 42 159-202 18-59 (151)
32 KOG2028 ATPase related to the 97.6 0.0003 6.4E-09 64.9 8.6 153 158-315 160-330 (554)
33 TIGR00767 rho transcription te 97.6 0.00021 4.5E-09 67.8 7.9 57 161-218 169-227 (415)
34 CHL00181 cbbX CbbX; Provisiona 97.6 0.0014 2.9E-08 60.5 12.8 126 161-288 60-209 (287)
35 TIGR02903 spore_lon_C ATP-depe 97.6 0.0098 2.1E-07 60.8 20.1 119 234-357 308-434 (615)
36 PRK12323 DNA polymerase III su 97.6 0.0011 2.4E-08 66.6 12.8 173 139-321 22-225 (700)
37 PRK07003 DNA polymerase III su 97.6 0.0014 3E-08 66.9 13.7 173 139-321 22-221 (830)
38 PRK06645 DNA polymerase III su 97.6 0.0031 6.8E-08 62.5 15.9 154 160-318 43-226 (507)
39 TIGR00678 holB DNA polymerase 97.6 0.0013 2.9E-08 56.5 11.8 146 160-317 14-187 (188)
40 TIGR02881 spore_V_K stage V sp 97.5 0.0022 4.8E-08 58.3 13.2 26 158-183 40-65 (261)
41 TIGR02880 cbbX_cfxQ probable R 97.5 0.0022 4.8E-08 59.0 13.3 125 162-288 60-208 (284)
42 PF13401 AAA_22: AAA domain; P 97.5 0.00011 2.3E-09 59.2 4.0 60 159-220 3-67 (131)
43 PRK00440 rfc replication facto 97.5 0.0019 4.1E-08 60.5 12.9 154 160-320 38-202 (319)
44 PRK14949 DNA polymerase III su 97.5 0.002 4.4E-08 66.9 13.7 155 160-319 38-218 (944)
45 PRK13341 recombination factor 97.5 0.001 2.2E-08 68.7 11.3 146 159-315 51-211 (725)
46 PLN03025 replication factor C 97.4 0.0023 5E-08 60.0 12.8 151 160-316 34-195 (319)
47 PRK14963 DNA polymerase III su 97.4 0.00048 1E-08 68.3 8.4 154 160-318 36-214 (504)
48 COG1373 Predicted ATPase (AAA+ 97.4 0.0024 5.3E-08 61.6 12.5 115 162-282 39-161 (398)
49 PTZ00202 tuzin; Provisional 97.4 0.0043 9.3E-08 59.4 13.4 69 139-218 268-336 (550)
50 PRK14087 dnaA chromosomal repl 97.4 0.0013 2.8E-08 64.5 10.5 156 160-325 141-323 (450)
51 PRK14962 DNA polymerase III su 97.3 0.0058 1.3E-07 60.2 14.5 159 161-325 37-223 (472)
52 TIGR01242 26Sp45 26S proteasom 97.3 0.0013 2.8E-08 62.9 9.6 149 160-315 156-328 (364)
53 PRK08903 DnaA regulatory inact 97.3 0.0011 2.4E-08 58.9 8.5 153 160-326 42-204 (227)
54 PRK07940 DNA polymerase III su 97.3 0.0064 1.4E-07 58.5 14.0 149 160-319 36-211 (394)
55 COG2255 RuvB Holliday junction 97.3 0.002 4.4E-08 57.7 9.7 163 156-329 48-231 (332)
56 PRK11331 5-methylcytosine-spec 97.3 0.00053 1.1E-08 66.1 6.5 62 139-208 181-242 (459)
57 PF05621 TniB: Bacterial TniB 97.3 0.016 3.4E-07 53.0 15.5 63 157-220 58-125 (302)
58 PRK14957 DNA polymerase III su 97.3 0.0035 7.7E-08 62.6 12.3 170 142-321 25-221 (546)
59 COG0593 DnaA ATPase involved i 97.3 0.0016 3.6E-08 62.1 9.4 124 159-288 112-257 (408)
60 PRK14960 DNA polymerase III su 97.3 0.006 1.3E-07 61.6 13.8 171 140-320 22-218 (702)
61 PRK14086 dnaA chromosomal repl 97.3 0.0039 8.4E-08 62.6 12.4 142 161-314 315-481 (617)
62 PRK14956 DNA polymerase III su 97.2 0.004 8.7E-08 60.8 11.7 151 161-316 41-217 (484)
63 PF13207 AAA_17: AAA domain; P 97.2 0.00027 5.8E-09 56.0 3.0 22 162-183 1-22 (121)
64 PF13191 AAA_16: AAA ATPase do 97.2 0.00057 1.2E-08 58.4 5.3 44 138-184 5-48 (185)
65 PRK06620 hypothetical protein; 97.2 0.0044 9.6E-08 54.5 10.7 133 161-316 45-184 (214)
66 PRK07261 topology modulation p 97.2 0.0009 1.9E-08 56.7 6.0 51 162-212 2-53 (171)
67 PRK04195 replication factor C 97.1 0.0063 1.4E-07 60.5 12.6 167 139-319 20-200 (482)
68 TIGR02397 dnaX_nterm DNA polym 97.1 0.016 3.4E-07 55.2 14.9 172 139-322 20-219 (355)
69 PRK14958 DNA polymerase III su 97.1 0.011 2.4E-07 58.9 14.0 172 139-320 22-219 (509)
70 PRK14955 DNA polymerase III su 97.1 0.0056 1.2E-07 59.3 11.6 155 160-320 38-227 (397)
71 PRK07994 DNA polymerase III su 97.1 0.0043 9.3E-08 63.0 11.1 154 161-319 39-218 (647)
72 PTZ00112 origin recognition co 97.1 0.0088 1.9E-07 62.0 13.0 78 139-217 761-843 (1164)
73 PRK14951 DNA polymerase III su 97.1 0.0063 1.4E-07 61.7 12.1 170 141-320 24-224 (618)
74 PRK14964 DNA polymerase III su 97.1 0.0055 1.2E-07 60.4 11.3 153 160-318 35-214 (491)
75 PRK07764 DNA polymerase III su 97.0 0.011 2.4E-07 62.1 13.7 167 141-318 23-218 (824)
76 PRK00149 dnaA chromosomal repl 97.0 0.0047 1E-07 60.9 10.4 147 160-318 148-319 (450)
77 PRK14088 dnaA chromosomal repl 97.0 0.0071 1.5E-07 59.3 11.3 143 160-314 130-298 (440)
78 PRK12422 chromosomal replicati 97.0 0.0038 8.3E-08 61.1 9.2 121 160-288 141-284 (445)
79 PRK14959 DNA polymerase III su 97.0 0.03 6.4E-07 56.7 15.4 161 160-325 38-225 (624)
80 PRK08691 DNA polymerase III su 96.9 0.018 3.9E-07 58.6 13.7 170 141-320 24-219 (709)
81 TIGR00362 DnaA chromosomal rep 96.9 0.0042 9.1E-08 60.3 8.9 147 160-318 136-307 (405)
82 PRK05896 DNA polymerase III su 96.9 0.014 2.9E-07 58.8 12.4 158 160-323 38-223 (605)
83 PRK05707 DNA polymerase III su 96.9 0.018 3.9E-07 54.1 12.7 154 159-321 21-203 (328)
84 PRK09111 DNA polymerase III su 96.8 0.022 4.8E-07 57.8 13.5 173 139-322 30-234 (598)
85 PRK07471 DNA polymerase III su 96.8 0.028 6.1E-07 53.6 13.5 83 231-321 154-238 (365)
86 PRK14969 DNA polymerase III su 96.8 0.02 4.3E-07 57.4 13.1 170 142-321 25-221 (527)
87 PRK09112 DNA polymerase III su 96.8 0.034 7.3E-07 52.7 13.8 85 231-321 154-240 (351)
88 TIGR03345 VI_ClpV1 type VI sec 96.8 0.012 2.7E-07 62.3 11.7 143 137-287 191-362 (852)
89 PRK06696 uridine kinase; Valid 96.8 0.0021 4.6E-08 57.0 5.2 38 143-183 8-45 (223)
90 PTZ00361 26 proteosome regulat 96.7 0.0096 2.1E-07 57.9 9.3 125 159-288 216-367 (438)
91 smart00763 AAA_PrkA PrkA AAA d 96.7 0.0022 4.7E-08 60.2 4.5 46 139-184 57-102 (361)
92 PRK14950 DNA polymerase III su 96.6 0.041 8.9E-07 56.0 14.0 159 160-323 38-223 (585)
93 PRK05703 flhF flagellar biosyn 96.6 0.035 7.7E-07 54.0 12.9 24 160-183 221-244 (424)
94 PRK08181 transposase; Validate 96.6 0.0014 3E-08 59.6 2.9 36 161-198 107-142 (269)
95 PRK03992 proteasome-activating 96.6 0.0096 2.1E-07 57.4 8.8 146 159-314 164-336 (389)
96 PF13238 AAA_18: AAA domain; P 96.6 0.0017 3.6E-08 51.8 2.8 21 163-183 1-21 (129)
97 KOG0741 AAA+-type ATPase [Post 96.6 0.055 1.2E-06 52.8 13.2 145 158-311 536-704 (744)
98 COG0466 Lon ATP-dependent Lon 96.6 0.0076 1.6E-07 60.6 7.7 50 139-190 329-378 (782)
99 PHA02544 44 clamp loader, smal 96.5 0.0088 1.9E-07 56.0 7.9 134 139-284 27-169 (316)
100 cd01878 HflX HflX subfamily. 96.5 0.0086 1.9E-07 52.1 7.4 57 120-184 9-65 (204)
101 PRK07667 uridine kinase; Provi 96.5 0.0036 7.9E-08 54.1 4.9 37 143-183 4-40 (193)
102 COG1618 Predicted nucleotide k 96.5 0.0018 3.8E-08 53.1 2.6 24 160-183 5-28 (179)
103 PRK14954 DNA polymerase III su 96.5 0.033 7.2E-07 56.7 12.2 84 233-320 142-228 (620)
104 PRK14970 DNA polymerase III su 96.5 0.037 8E-07 53.0 12.1 167 142-318 26-206 (367)
105 PF00485 PRK: Phosphoribulokin 96.5 0.0021 4.5E-08 55.7 3.0 22 162-183 1-22 (194)
106 PRK08233 hypothetical protein; 96.5 0.0024 5.2E-08 54.5 3.3 24 160-183 3-26 (182)
107 PRK14953 DNA polymerase III su 96.5 0.053 1.1E-06 53.8 13.0 158 160-322 38-221 (486)
108 PRK05480 uridine/cytidine kina 96.4 0.0027 5.8E-08 55.7 3.5 25 159-183 5-29 (209)
109 KOG0989 Replication factor C, 96.4 0.0068 1.5E-07 55.0 5.9 161 158-322 55-232 (346)
110 PRK14952 DNA polymerase III su 96.4 0.062 1.3E-06 54.3 13.4 172 141-323 21-222 (584)
111 PRK05541 adenylylsulfate kinas 96.4 0.0041 9E-08 52.8 4.3 36 159-196 6-41 (176)
112 PF13671 AAA_33: AAA domain; P 96.4 0.0029 6.3E-08 51.6 3.2 22 162-183 1-22 (143)
113 PTZ00301 uridine kinase; Provi 96.4 0.0041 8.8E-08 54.5 4.2 24 160-183 3-26 (210)
114 COG1222 RPT1 ATP-dependent 26S 96.3 0.04 8.7E-07 51.2 10.4 156 158-325 183-371 (406)
115 PRK14971 DNA polymerase III su 96.3 0.079 1.7E-06 54.1 13.7 166 142-318 26-219 (614)
116 smart00382 AAA ATPases associa 96.3 0.0051 1.1E-07 49.3 4.3 37 161-199 3-39 (148)
117 COG1474 CDC6 Cdc6-related prot 96.3 0.14 3E-06 48.9 14.5 54 162-217 44-99 (366)
118 TIGR00235 udk uridine kinase. 96.3 0.0036 7.7E-08 54.8 3.4 25 159-183 5-29 (207)
119 cd01123 Rad51_DMC1_radA Rad51_ 96.3 0.013 2.8E-07 52.2 7.1 55 159-214 18-76 (235)
120 PRK06762 hypothetical protein; 96.3 0.0034 7.4E-08 52.8 3.1 23 161-183 3-25 (166)
121 cd02019 NK Nucleoside/nucleoti 96.3 0.0033 7.1E-08 44.5 2.5 22 162-183 1-22 (69)
122 TIGR02237 recomb_radB DNA repa 96.3 0.0081 1.8E-07 52.6 5.5 48 159-209 11-58 (209)
123 TIGR00763 lon ATP-dependent pr 96.3 0.024 5.2E-07 59.7 9.9 45 139-183 326-370 (775)
124 PRK06547 hypothetical protein; 96.2 0.0066 1.4E-07 51.4 4.7 26 158-183 13-38 (172)
125 PRK08769 DNA polymerase III su 96.2 0.051 1.1E-06 50.7 10.9 152 160-321 26-208 (319)
126 PF00004 AAA: ATPase family as 96.2 0.0035 7.7E-08 50.1 2.8 51 163-218 1-56 (132)
127 KOG2004 Mitochondrial ATP-depe 96.2 0.03 6.4E-07 56.5 9.5 45 139-183 417-461 (906)
128 PRK09270 nucleoside triphospha 96.2 0.0058 1.3E-07 54.4 4.3 26 158-183 31-56 (229)
129 PRK08116 hypothetical protein; 96.2 0.0033 7.1E-08 57.4 2.7 36 161-198 115-150 (268)
130 PHA00729 NTP-binding motif con 96.2 0.0069 1.5E-07 53.2 4.5 25 159-183 16-40 (226)
131 TIGR02639 ClpA ATP-dependent C 96.2 0.039 8.6E-07 57.8 10.9 141 138-287 187-357 (731)
132 PRK12377 putative replication 96.1 0.0046 9.9E-08 55.6 3.3 37 161-199 102-138 (248)
133 PF14516 AAA_35: AAA-like doma 96.1 0.2 4.4E-06 47.2 14.5 51 268-326 194-244 (331)
134 TIGR01360 aden_kin_iso1 adenyl 96.1 0.005 1.1E-07 52.8 3.3 25 159-183 2-26 (188)
135 PRK08451 DNA polymerase III su 96.1 0.093 2E-06 52.4 12.4 157 160-321 36-218 (535)
136 PRK03839 putative kinase; Prov 96.1 0.0046 1E-07 52.8 2.9 22 162-183 2-23 (180)
137 PRK14965 DNA polymerase III su 96.0 0.12 2.6E-06 52.6 13.3 156 160-321 38-221 (576)
138 PRK06526 transposase; Provisio 96.0 0.0024 5.3E-08 57.6 1.1 23 161-183 99-121 (254)
139 COG0467 RAD55 RecA-superfamily 96.0 0.02 4.3E-07 52.1 7.0 50 158-211 21-70 (260)
140 COG0572 Udk Uridine kinase [Nu 96.0 0.006 1.3E-07 53.1 3.2 26 158-183 6-31 (218)
141 PRK11034 clpA ATP-dependent Cl 95.9 0.24 5.1E-06 51.9 15.1 143 138-287 191-361 (758)
142 PRK04040 adenylate kinase; Pro 95.9 0.0062 1.3E-07 52.4 3.1 23 161-183 3-25 (188)
143 TIGR00554 panK_bact pantothena 95.9 0.013 2.8E-07 53.9 5.3 25 158-182 60-84 (290)
144 PRK14948 DNA polymerase III su 95.9 0.12 2.6E-06 52.9 12.7 155 161-320 39-221 (620)
145 PRK07133 DNA polymerase III su 95.9 0.13 2.8E-06 53.1 12.8 155 160-321 40-220 (725)
146 cd02023 UMPK Uridine monophosp 95.9 0.0052 1.1E-07 53.3 2.5 22 162-183 1-22 (198)
147 PF00448 SRP54: SRP54-type pro 95.9 0.017 3.8E-07 50.0 5.7 57 160-218 1-58 (196)
148 PF07728 AAA_5: AAA domain (dy 95.9 0.015 3.3E-07 47.1 5.1 42 163-209 2-43 (139)
149 PRK06090 DNA polymerase III su 95.9 0.38 8.3E-06 44.9 14.8 150 159-321 24-201 (319)
150 TIGR03346 chaperone_ClpB ATP-d 95.9 0.1 2.3E-06 55.6 12.5 41 137-183 177-217 (852)
151 TIGR02322 phosphon_PhnN phosph 95.8 0.0069 1.5E-07 51.6 3.0 23 161-183 2-24 (179)
152 PRK06305 DNA polymerase III su 95.8 0.18 3.9E-06 49.6 13.2 155 160-321 39-223 (451)
153 TIGR03689 pup_AAA proteasome A 95.8 0.044 9.5E-07 54.3 8.9 25 159-183 215-239 (512)
154 PRK10787 DNA-binding ATP-depen 95.8 0.017 3.6E-07 60.6 6.3 45 139-183 328-372 (784)
155 TIGR01359 UMP_CMP_kin_fam UMP- 95.8 0.006 1.3E-07 52.1 2.5 22 162-183 1-22 (183)
156 cd02025 PanK Pantothenate kina 95.8 0.0057 1.2E-07 54.0 2.4 22 162-183 1-22 (220)
157 cd01394 radB RadB. The archaea 95.8 0.027 5.9E-07 49.6 6.7 43 159-203 18-60 (218)
158 cd01393 recA_like RecA is a b 95.8 0.026 5.7E-07 49.9 6.6 48 159-208 18-71 (226)
159 PRK00131 aroK shikimate kinase 95.8 0.0081 1.8E-07 50.7 3.2 24 160-183 4-27 (175)
160 PRK06647 DNA polymerase III su 95.8 0.22 4.7E-06 50.4 13.7 169 141-320 24-219 (563)
161 PRK08058 DNA polymerase III su 95.8 0.18 3.8E-06 47.5 12.4 127 159-287 27-181 (329)
162 PTZ00454 26S protease regulato 95.8 0.025 5.5E-07 54.5 6.8 25 159-183 178-202 (398)
163 PRK10751 molybdopterin-guanine 95.8 0.01 2.3E-07 50.0 3.6 25 159-183 5-29 (173)
164 PF00625 Guanylate_kin: Guanyl 95.7 0.012 2.6E-07 50.4 4.1 36 160-197 2-37 (183)
165 PRK00625 shikimate kinase; Pro 95.7 0.0074 1.6E-07 51.1 2.7 22 162-183 2-23 (173)
166 PRK09361 radB DNA repair and r 95.7 0.028 6E-07 49.8 6.5 46 159-207 22-67 (225)
167 cd02024 NRK1 Nicotinamide ribo 95.7 0.007 1.5E-07 51.9 2.5 22 162-183 1-22 (187)
168 TIGR03263 guanyl_kin guanylate 95.7 0.0089 1.9E-07 50.9 3.1 23 161-183 2-24 (180)
169 PRK05439 pantothenate kinase; 95.7 0.039 8.4E-07 51.2 7.4 26 157-182 83-108 (311)
170 PRK00889 adenylylsulfate kinas 95.7 0.011 2.4E-07 50.2 3.5 24 160-183 4-27 (175)
171 PRK06871 DNA polymerase III su 95.7 0.36 7.7E-06 45.2 13.7 149 160-318 24-200 (325)
172 TIGR00150 HI0065_YjeE ATPase, 95.6 0.021 4.6E-07 45.9 4.9 25 160-184 22-46 (133)
173 PF00910 RNA_helicase: RNA hel 95.6 0.0069 1.5E-07 46.9 2.0 21 163-183 1-21 (107)
174 PRK10865 protein disaggregatio 95.6 0.16 3.5E-06 54.1 12.8 40 138-183 183-222 (857)
175 cd02028 UMPK_like Uridine mono 95.6 0.0081 1.8E-07 51.3 2.5 22 162-183 1-22 (179)
176 PF01583 APS_kinase: Adenylyls 95.6 0.011 2.5E-07 48.8 3.3 34 161-196 3-36 (156)
177 KOG0730 AAA+-type ATPase [Post 95.6 0.098 2.1E-06 52.4 10.2 123 158-288 466-615 (693)
178 KOG1532 GTPase XAB1, interacts 95.6 0.0098 2.1E-07 53.0 3.0 26 158-183 17-42 (366)
179 cd02021 GntK Gluconate kinase 95.5 0.0092 2E-07 49.2 2.6 22 162-183 1-22 (150)
180 cd00227 CPT Chloramphenicol (C 95.5 0.01 2.2E-07 50.4 2.9 23 161-183 3-25 (175)
181 PF03193 DUF258: Protein of un 95.5 0.042 9.1E-07 45.7 6.4 37 139-184 23-59 (161)
182 PRK06217 hypothetical protein; 95.5 0.0095 2.1E-07 51.0 2.7 34 162-196 3-38 (183)
183 PRK14738 gmk guanylate kinase; 95.5 0.012 2.7E-07 51.4 3.5 26 158-183 11-36 (206)
184 PF03205 MobB: Molybdopterin g 95.5 0.012 2.6E-07 48.0 3.0 39 161-200 1-39 (140)
185 COG1936 Predicted nucleotide k 95.5 0.011 2.3E-07 49.3 2.7 20 162-181 2-21 (180)
186 PF08477 Miro: Miro-like prote 95.5 0.012 2.6E-07 46.1 3.0 22 163-184 2-23 (119)
187 TIGR02236 recomb_radA DNA repa 95.5 0.048 1E-06 50.9 7.4 56 159-215 94-153 (310)
188 PRK03846 adenylylsulfate kinas 95.5 0.014 3E-07 50.7 3.5 26 158-183 22-47 (198)
189 PRK15455 PrkA family serine pr 95.4 0.013 2.8E-07 58.3 3.5 44 139-182 82-125 (644)
190 PRK10865 protein disaggregatio 95.4 0.7 1.5E-05 49.4 16.7 45 139-183 574-621 (857)
191 cd02020 CMPK Cytidine monophos 95.4 0.011 2.3E-07 48.4 2.5 22 162-183 1-22 (147)
192 KOG0728 26S proteasome regulat 95.4 0.32 6.9E-06 43.1 11.6 37 158-201 179-215 (404)
193 PRK00300 gmk guanylate kinase; 95.4 0.012 2.6E-07 51.3 3.0 24 160-183 5-28 (205)
194 COG0563 Adk Adenylate kinase a 95.4 0.011 2.5E-07 50.2 2.7 22 162-183 2-23 (178)
195 PF04665 Pox_A32: Poxvirus A32 95.4 0.018 3.8E-07 51.2 4.0 36 161-198 14-49 (241)
196 COG0194 Gmk Guanylate kinase [ 95.4 0.02 4.2E-07 48.4 4.0 23 161-183 5-27 (191)
197 cd01120 RecA-like_NTPases RecA 95.4 0.014 3.1E-07 48.3 3.3 38 162-201 1-38 (165)
198 COG2019 AdkA Archaeal adenylat 95.4 0.015 3.3E-07 48.0 3.2 48 160-219 4-51 (189)
199 PRK07993 DNA polymerase III su 95.3 0.59 1.3E-05 44.0 14.3 150 159-318 23-201 (334)
200 TIGR01241 FtsH_fam ATP-depende 95.3 0.13 2.7E-06 51.5 10.3 24 160-183 88-111 (495)
201 COG1126 GlnQ ABC-type polar am 95.3 0.025 5.3E-07 49.0 4.4 35 161-198 29-63 (240)
202 PRK11889 flhF flagellar biosyn 95.3 0.024 5.2E-07 54.0 4.7 26 158-183 239-264 (436)
203 PRK14530 adenylate kinase; Pro 95.3 0.013 2.9E-07 51.5 2.9 22 162-183 5-26 (215)
204 COG1428 Deoxynucleoside kinase 95.3 0.013 2.9E-07 50.3 2.7 24 160-183 4-27 (216)
205 cd00071 GMPK Guanosine monopho 95.3 0.013 2.9E-07 47.6 2.6 22 162-183 1-22 (137)
206 PRK13947 shikimate kinase; Pro 95.3 0.013 2.8E-07 49.4 2.7 22 162-183 3-24 (171)
207 PRK10078 ribose 1,5-bisphospho 95.3 0.015 3.3E-07 49.9 3.1 23 161-183 3-25 (186)
208 KOG0731 AAA+-type ATPase conta 95.3 0.28 6.1E-06 50.5 12.4 169 139-318 320-521 (774)
209 TIGR00073 hypB hydrogenase acc 95.3 0.016 3.4E-07 50.7 3.2 27 157-183 19-45 (207)
210 PF03266 NTPase_1: NTPase; In 95.2 0.014 3E-07 49.2 2.7 21 163-183 2-22 (168)
211 KOG0734 AAA+-type ATPase conta 95.2 0.11 2.4E-06 50.8 8.8 47 139-185 313-362 (752)
212 PRK13949 shikimate kinase; Pro 95.2 0.015 3.2E-07 49.2 2.7 22 162-183 3-24 (169)
213 PF03308 ArgK: ArgK protein; 95.2 0.034 7.5E-07 49.6 5.1 63 141-207 14-76 (266)
214 TIGR03345 VI_ClpV1 type VI sec 95.2 0.1 2.2E-06 55.5 9.4 58 125-182 556-618 (852)
215 PF00005 ABC_tran: ABC transpo 95.1 0.024 5.1E-07 45.8 3.8 34 161-197 12-45 (137)
216 PF07726 AAA_3: ATPase family 95.1 0.011 2.4E-07 46.9 1.7 27 163-191 2-28 (131)
217 PRK12339 2-phosphoglycerate ki 95.1 0.019 4.1E-07 49.8 3.3 24 160-183 3-26 (197)
218 CHL00095 clpC Clp protease ATP 95.1 1.3 2.9E-05 47.2 17.7 60 123-182 497-561 (821)
219 PRK14737 gmk guanylate kinase; 95.1 0.02 4.4E-07 49.1 3.4 25 159-183 3-27 (186)
220 PLN02348 phosphoribulokinase 95.1 0.023 5E-07 54.0 4.0 26 158-183 47-72 (395)
221 PRK12723 flagellar biosynthesi 95.1 0.28 6E-06 47.1 11.4 25 159-183 173-197 (388)
222 PF14532 Sigma54_activ_2: Sigm 95.1 0.042 9E-07 44.6 5.1 23 161-183 22-44 (138)
223 cd02027 APSK Adenosine 5'-phos 95.1 0.015 3.3E-07 47.9 2.5 22 162-183 1-22 (149)
224 PRK07399 DNA polymerase III su 95.1 0.35 7.6E-06 45.2 11.9 82 231-320 137-220 (314)
225 PF06309 Torsin: Torsin; Inte 95.1 0.053 1.1E-06 42.9 5.4 42 139-183 35-76 (127)
226 cd00464 SK Shikimate kinase (S 95.1 0.016 3.5E-07 47.8 2.7 21 163-183 2-22 (154)
227 PRK05973 replicative DNA helic 95.1 0.065 1.4E-06 47.7 6.6 48 160-211 64-111 (237)
228 PRK13975 thymidylate kinase; P 95.1 0.018 3.9E-07 49.8 3.0 23 161-183 3-25 (196)
229 COG1102 Cmk Cytidylate kinase 95.1 0.015 3.2E-07 47.8 2.3 43 162-217 2-44 (179)
230 PRK04301 radA DNA repair and r 95.1 0.043 9.4E-07 51.4 5.8 56 159-215 101-160 (317)
231 TIGR01313 therm_gnt_kin carboh 95.1 0.015 3.2E-07 48.7 2.3 21 163-183 1-21 (163)
232 cd00820 PEPCK_HprK Phosphoenol 95.0 0.022 4.7E-07 43.9 3.0 21 161-181 16-36 (107)
233 KOG3308 Uncharacterized protei 95.0 0.11 2.4E-06 44.3 7.3 77 159-242 3-101 (225)
234 PRK14527 adenylate kinase; Pro 95.0 0.021 4.5E-07 49.3 3.2 25 159-183 5-29 (191)
235 KOG1969 DNA replication checkp 95.0 0.051 1.1E-06 55.0 6.1 57 156-217 322-378 (877)
236 PLN02200 adenylate kinase fami 95.0 0.022 4.8E-07 50.8 3.3 26 158-183 41-66 (234)
237 TIGR00064 ftsY signal recognit 95.0 0.041 9E-07 50.2 5.2 26 158-183 70-95 (272)
238 COG1124 DppF ABC-type dipeptid 95.0 0.021 4.5E-07 50.3 3.0 22 161-182 34-55 (252)
239 PF08423 Rad51: Rad51; InterP 95.0 0.069 1.5E-06 48.4 6.5 56 159-215 37-96 (256)
240 TIGR00176 mobB molybdopterin-g 94.9 0.018 3.9E-07 47.9 2.5 22 162-183 1-22 (155)
241 TIGR02639 ClpA ATP-dependent C 94.9 0.19 4E-06 52.8 10.6 45 139-183 460-507 (731)
242 COG1703 ArgK Putative periplas 94.9 0.029 6.3E-07 50.9 3.9 63 144-210 39-101 (323)
243 TIGR02640 gas_vesic_GvpN gas v 94.9 0.066 1.4E-06 48.7 6.4 21 162-182 23-43 (262)
244 PRK05057 aroK shikimate kinase 94.9 0.022 4.8E-07 48.2 3.0 23 161-183 5-27 (172)
245 cd01124 KaiC KaiC is a circadi 94.9 0.027 5.8E-07 48.1 3.6 44 162-209 1-44 (187)
246 COG0464 SpoVK ATPases of the A 94.8 0.24 5.3E-06 49.4 10.7 130 158-289 274-424 (494)
247 PRK13531 regulatory ATPase Rav 94.8 0.082 1.8E-06 51.8 6.9 54 122-183 7-62 (498)
248 COG3640 CooC CO dehydrogenase 94.8 0.039 8.4E-07 48.3 4.1 21 162-182 2-22 (255)
249 KOG0744 AAA+-type ATPase [Post 94.8 0.037 8E-07 50.7 4.1 27 160-186 177-203 (423)
250 cd01672 TMPK Thymidine monopho 94.8 0.058 1.2E-06 46.4 5.4 22 162-183 2-23 (200)
251 TIGR03499 FlhF flagellar biosy 94.8 0.027 5.8E-07 51.8 3.4 25 159-183 193-217 (282)
252 PRK08154 anaerobic benzoate ca 94.8 0.068 1.5E-06 49.9 6.1 25 159-183 132-156 (309)
253 COG1100 GTPase SAR1 and relate 94.8 0.023 5E-07 49.9 2.9 24 161-184 6-29 (219)
254 TIGR00960 3a0501s02 Type II (G 94.8 0.04 8.6E-07 48.5 4.4 33 161-196 30-62 (216)
255 PRK12727 flagellar biosynthesi 94.8 0.19 4.1E-06 49.8 9.3 24 160-183 350-373 (559)
256 PRK12726 flagellar biosynthesi 94.8 0.21 4.5E-06 47.6 9.2 40 158-199 204-243 (407)
257 PF13521 AAA_28: AAA domain; P 94.7 0.023 4.9E-07 47.6 2.7 20 163-182 2-21 (163)
258 PF03029 ATP_bind_1: Conserved 94.7 0.029 6.4E-07 50.1 3.5 33 165-199 1-33 (238)
259 PLN02318 phosphoribulokinase/u 94.7 0.041 8.9E-07 55.0 4.7 26 158-183 63-88 (656)
260 CHL00176 ftsH cell division pr 94.7 0.32 6.8E-06 49.9 11.2 24 160-183 216-239 (638)
261 cd04139 RalA_RalB RalA/RalB su 94.7 0.026 5.7E-07 46.7 2.9 23 162-184 2-24 (164)
262 CHL00195 ycf46 Ycf46; Provisio 94.7 0.18 3.9E-06 50.0 9.1 25 159-183 258-282 (489)
263 cd03297 ABC_ModC_molybdenum_tr 94.7 0.047 1E-06 47.9 4.6 35 158-196 22-56 (214)
264 COG0237 CoaE Dephospho-CoA kin 94.7 0.027 5.8E-07 48.9 3.0 22 161-182 3-24 (201)
265 PRK08356 hypothetical protein; 94.7 0.032 7E-07 48.3 3.5 21 161-181 6-26 (195)
266 PRK04182 cytidylate kinase; Pr 94.7 0.026 5.7E-07 47.8 2.9 22 162-183 2-23 (180)
267 PRK09825 idnK D-gluconate kina 94.7 0.027 5.9E-07 47.9 3.0 23 161-183 4-26 (176)
268 TIGR01166 cbiO cobalt transpor 94.7 0.045 9.7E-07 47.1 4.4 23 161-183 19-41 (190)
269 cd03255 ABC_MJ0796_Lo1CDE_FtsE 94.6 0.043 9.4E-07 48.3 4.4 33 161-196 31-63 (218)
270 PRK13946 shikimate kinase; Pro 94.6 0.028 6E-07 48.2 3.0 25 159-183 9-33 (184)
271 TIGR03346 chaperone_ClpB ATP-d 94.6 0.32 6.9E-06 52.0 11.5 59 125-183 555-618 (852)
272 PLN03187 meiotic recombination 94.6 0.082 1.8E-06 49.9 6.3 57 159-216 125-185 (344)
273 PRK13948 shikimate kinase; Pro 94.6 0.032 7E-07 47.6 3.3 25 159-183 9-33 (182)
274 TIGR02673 FtsE cell division A 94.6 0.046 9.9E-07 48.0 4.4 33 161-196 29-61 (214)
275 PRK06964 DNA polymerase III su 94.6 0.8 1.7E-05 43.2 12.9 77 231-319 145-223 (342)
276 PF10662 PduV-EutP: Ethanolami 94.6 0.03 6.4E-07 45.5 2.9 24 161-184 2-25 (143)
277 cd03269 ABC_putative_ATPase Th 94.6 0.047 1E-06 47.8 4.4 34 161-197 27-60 (210)
278 TIGR03156 GTP_HflX GTP-binding 94.6 0.13 2.7E-06 49.0 7.5 57 119-183 156-212 (351)
279 KOG3347 Predicted nucleotide k 94.6 0.027 5.8E-07 45.7 2.4 23 160-182 7-29 (176)
280 PRK13695 putative NTPase; Prov 94.6 0.032 6.9E-07 47.3 3.2 22 162-183 2-23 (174)
281 KOG2543 Origin recognition com 94.6 0.13 2.8E-06 48.3 7.2 53 159-216 29-81 (438)
282 PF01926 MMR_HSR1: 50S ribosom 94.6 0.033 7.1E-07 43.6 3.0 21 163-183 2-22 (116)
283 cd03265 ABC_DrrA DrrA is the A 94.6 0.048 1E-06 48.1 4.4 34 161-197 27-60 (220)
284 PRK08699 DNA polymerase III su 94.6 0.27 5.9E-06 46.1 9.6 128 159-287 20-184 (325)
285 PRK09435 membrane ATPase/prote 94.6 0.039 8.5E-07 51.7 4.0 26 158-183 54-79 (332)
286 TIGR02238 recomb_DMC1 meiotic 94.5 0.081 1.7E-06 49.4 6.0 57 159-216 95-155 (313)
287 cd01131 PilT Pilus retraction 94.5 0.043 9.3E-07 47.6 3.9 23 161-183 2-24 (198)
288 cd01428 ADK Adenylate kinase ( 94.5 0.027 5.9E-07 48.4 2.7 21 163-183 2-22 (194)
289 COG2884 FtsE Predicted ATPase 94.5 0.067 1.4E-06 45.4 4.8 25 160-184 28-52 (223)
290 PHA02244 ATPase-like protein 94.5 0.09 2E-06 49.7 6.2 36 140-183 107-142 (383)
291 TIGR03574 selen_PSTK L-seryl-t 94.5 0.025 5.3E-07 51.0 2.5 22 162-183 1-22 (249)
292 PRK14532 adenylate kinase; Pro 94.5 0.028 6.1E-07 48.2 2.7 21 163-183 3-23 (188)
293 cd03222 ABC_RNaseL_inhibitor T 94.5 0.054 1.2E-06 46.1 4.4 23 161-183 26-48 (177)
294 cd03225 ABC_cobalt_CbiO_domain 94.5 0.052 1.1E-06 47.5 4.4 23 161-183 28-50 (211)
295 PF10443 RNA12: RNA12 protein; 94.5 3.6 7.9E-05 39.7 16.9 79 248-326 183-283 (431)
296 TIGR02173 cyt_kin_arch cytidyl 94.5 0.031 6.8E-07 47.0 2.9 22 162-183 2-23 (171)
297 PRK10416 signal recognition pa 94.5 0.038 8.3E-07 51.6 3.7 26 158-183 112-137 (318)
298 PRK06761 hypothetical protein; 94.5 0.061 1.3E-06 49.1 4.9 23 161-183 4-26 (282)
299 PRK00771 signal recognition pa 94.5 0.11 2.4E-06 50.7 6.9 26 158-183 93-118 (437)
300 PRK15453 phosphoribulokinase; 94.4 0.036 7.9E-07 50.3 3.4 24 159-182 4-27 (290)
301 cd03229 ABC_Class3 This class 94.4 0.056 1.2E-06 46.0 4.4 23 161-183 27-49 (178)
302 KOG0738 AAA+-type ATPase [Post 94.4 0.11 2.4E-06 48.9 6.4 25 159-183 244-268 (491)
303 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.4 0.057 1.2E-06 44.2 4.3 23 161-183 27-49 (144)
304 TIGR03877 thermo_KaiC_1 KaiC d 94.4 0.14 3E-06 45.8 7.1 48 159-210 20-67 (237)
305 cd03116 MobB Molybdenum is an 94.4 0.036 7.7E-07 46.3 3.0 23 161-183 2-24 (159)
306 PRK01184 hypothetical protein; 94.4 0.033 7.2E-07 47.6 3.0 18 161-178 2-19 (184)
307 cd03293 ABC_NrtD_SsuB_transpor 94.4 0.054 1.2E-06 47.8 4.4 23 161-183 31-53 (220)
308 TIGR02012 tigrfam_recA protein 94.4 0.049 1.1E-06 50.7 4.2 43 159-203 54-96 (321)
309 cd03264 ABC_drug_resistance_li 94.4 0.05 1.1E-06 47.6 4.1 33 162-197 27-59 (211)
310 PF03215 Rad17: Rad17 cell cyc 94.4 0.061 1.3E-06 53.6 5.1 50 143-197 29-78 (519)
311 smart00173 RAS Ras subfamily o 94.4 0.034 7.4E-07 46.2 2.9 22 162-183 2-23 (164)
312 PF13245 AAA_19: Part of AAA d 94.4 0.044 9.5E-07 39.5 3.0 23 160-182 10-33 (76)
313 COG3899 Predicted ATPase [Gene 94.4 0.38 8.3E-06 51.2 11.3 55 267-326 211-265 (849)
314 cd03263 ABC_subfamily_A The AB 94.4 0.057 1.2E-06 47.6 4.4 33 161-196 29-61 (220)
315 cd00983 recA RecA is a bacter 94.4 0.049 1.1E-06 50.8 4.1 43 159-203 54-96 (325)
316 TIGR03864 PQQ_ABC_ATP ABC tran 94.4 0.056 1.2E-06 48.3 4.4 23 161-183 28-50 (236)
317 TIGR01425 SRP54_euk signal rec 94.4 0.071 1.5E-06 51.6 5.3 25 158-182 98-122 (429)
318 cd01862 Rab7 Rab7 subfamily. 94.3 0.036 7.7E-07 46.4 3.0 22 162-183 2-23 (172)
319 cd03224 ABC_TM1139_LivF_branch 94.3 0.059 1.3E-06 47.5 4.5 33 161-196 27-59 (222)
320 PRK14531 adenylate kinase; Pro 94.3 0.035 7.7E-07 47.5 2.9 23 161-183 3-25 (183)
321 COG1116 TauB ABC-type nitrate/ 94.3 0.037 8.1E-07 49.0 3.0 22 161-182 30-51 (248)
322 CHL00095 clpC Clp protease ATP 94.3 0.044 9.4E-07 58.2 4.2 41 137-183 183-223 (821)
323 PTZ00088 adenylate kinase 1; P 94.3 0.032 7E-07 49.5 2.7 22 162-183 8-29 (229)
324 cd04163 Era Era subfamily. Er 94.3 0.043 9.3E-07 45.3 3.4 24 160-183 3-26 (168)
325 TIGR00041 DTMP_kinase thymidyl 94.3 0.091 2E-06 45.3 5.5 23 161-183 4-26 (195)
326 COG0529 CysC Adenylylsulfate k 94.3 0.046 9.9E-07 45.7 3.3 26 158-183 21-46 (197)
327 TIGR01287 nifH nitrogenase iro 94.3 0.034 7.3E-07 51.0 2.9 23 161-183 1-23 (275)
328 cd04119 RJL RJL (RabJ-Like) su 94.3 0.037 8E-07 46.0 3.0 21 163-183 3-23 (168)
329 cd03266 ABC_NatA_sodium_export 94.3 0.06 1.3E-06 47.4 4.4 34 161-197 32-65 (218)
330 cd03226 ABC_cobalt_CbiO_domain 94.3 0.06 1.3E-06 46.9 4.4 33 161-196 27-59 (205)
331 COG1084 Predicted GTPase [Gene 94.3 0.61 1.3E-05 43.0 10.8 55 121-182 136-190 (346)
332 PRK14493 putative bifunctional 94.3 0.037 8.1E-07 50.5 3.1 23 161-183 2-24 (274)
333 cd02022 DPCK Dephospho-coenzym 94.3 0.032 7E-07 47.5 2.5 21 162-182 1-21 (179)
334 PLN02796 D-glycerate 3-kinase 94.2 0.042 9.1E-07 51.5 3.4 25 159-183 99-123 (347)
335 TIGR02211 LolD_lipo_ex lipopro 94.2 0.063 1.4E-06 47.3 4.5 33 161-196 32-64 (221)
336 PRK10584 putative ABC transpor 94.2 0.062 1.3E-06 47.7 4.4 33 161-196 37-69 (228)
337 PRK13540 cytochrome c biogenes 94.2 0.064 1.4E-06 46.5 4.4 34 161-197 28-61 (200)
338 PRK08099 bifunctional DNA-bind 94.2 0.035 7.6E-07 53.6 3.0 26 158-183 217-242 (399)
339 smart00072 GuKc Guanylate kina 94.2 0.051 1.1E-06 46.5 3.7 23 161-183 3-25 (184)
340 TIGR02315 ABC_phnC phosphonate 94.2 0.061 1.3E-06 48.2 4.4 33 161-196 29-61 (243)
341 PRK03731 aroL shikimate kinase 94.2 0.038 8.2E-07 46.6 2.8 23 161-183 3-25 (171)
342 cd01130 VirB11-like_ATPase Typ 94.2 0.077 1.7E-06 45.5 4.8 23 161-183 26-48 (186)
343 cd03218 ABC_YhbG The ABC trans 94.2 0.065 1.4E-06 47.7 4.4 33 161-196 27-59 (232)
344 cd03235 ABC_Metallic_Cations A 94.2 0.063 1.4E-06 47.1 4.3 33 161-196 26-58 (213)
345 COG1419 FlhF Flagellar GTP-bin 94.2 0.038 8.2E-07 52.5 3.0 23 160-182 203-226 (407)
346 cd03301 ABC_MalK_N The N-termi 94.2 0.066 1.4E-06 46.9 4.4 33 161-196 27-59 (213)
347 PRK13973 thymidylate kinase; P 94.2 0.11 2.4E-06 45.6 5.9 23 161-183 4-26 (213)
348 cd03256 ABC_PhnC_transporter A 94.1 0.064 1.4E-06 48.0 4.4 23 161-183 28-50 (241)
349 COG0125 Tmk Thymidylate kinase 94.1 0.16 3.4E-06 44.3 6.6 35 161-197 4-38 (208)
350 PRK06995 flhF flagellar biosyn 94.1 0.19 4.1E-06 49.5 7.9 24 160-183 256-279 (484)
351 PLN03186 DNA repair protein RA 94.1 0.11 2.3E-06 49.1 5.9 57 159-216 122-182 (342)
352 TIGR00231 small_GTP small GTP- 94.1 0.042 9.2E-07 44.7 3.0 23 162-184 3-25 (161)
353 cd02117 NifH_like This family 94.1 0.041 8.8E-07 48.3 3.0 22 161-182 1-22 (212)
354 COG0003 ArsA Predicted ATPase 94.1 0.078 1.7E-06 49.5 4.9 49 160-210 2-50 (322)
355 COG0468 RecA RecA/RadA recombi 94.1 0.095 2.1E-06 47.8 5.4 50 158-209 58-107 (279)
356 TIGR03608 L_ocin_972_ABC putat 94.1 0.069 1.5E-06 46.5 4.4 33 161-196 25-57 (206)
357 PHA02530 pseT polynucleotide k 94.1 0.04 8.8E-07 51.1 3.1 23 161-183 3-25 (300)
358 PRK05563 DNA polymerase III su 94.1 0.42 9.1E-06 48.4 10.5 166 142-318 25-217 (559)
359 cd03230 ABC_DR_subfamily_A Thi 94.1 0.073 1.6E-06 45.0 4.4 23 161-183 27-49 (173)
360 cd04155 Arl3 Arl3 subfamily. 94.1 0.05 1.1E-06 45.7 3.4 25 159-183 13-37 (173)
361 PRK10247 putative ABC transpor 94.1 0.069 1.5E-06 47.3 4.4 33 161-196 34-66 (225)
362 PRK13236 nitrogenase reductase 94.1 0.047 1E-06 50.6 3.5 25 157-181 3-27 (296)
363 cd04138 H_N_K_Ras_like H-Ras/N 94.1 0.042 9E-07 45.4 2.9 22 162-183 3-24 (162)
364 PRK13538 cytochrome c biogenes 94.1 0.071 1.5E-06 46.4 4.4 33 161-196 28-60 (204)
365 COG1120 FepC ABC-type cobalami 94.1 0.07 1.5E-06 47.9 4.4 35 160-197 28-62 (258)
366 PRK06067 flagellar accessory p 94.1 0.17 3.6E-06 45.2 6.9 49 158-210 23-71 (234)
367 smart00175 RAB Rab subfamily o 94.1 0.043 9.4E-07 45.4 3.0 21 163-183 3-23 (164)
368 PRK13974 thymidylate kinase; P 94.1 0.13 2.7E-06 45.2 6.0 24 161-184 4-27 (212)
369 cd03261 ABC_Org_Solvent_Resist 94.1 0.067 1.5E-06 47.7 4.4 23 161-183 27-49 (235)
370 PF13177 DNA_pol3_delta2: DNA 94.1 0.31 6.8E-06 40.7 8.2 100 159-259 18-143 (162)
371 cd03296 ABC_CysA_sulfate_impor 94.1 0.068 1.5E-06 47.8 4.4 23 161-183 29-51 (239)
372 PRK11629 lolD lipoprotein tran 94.1 0.069 1.5E-06 47.6 4.4 33 161-196 36-68 (233)
373 PF13086 AAA_11: AAA domain; P 94.1 0.064 1.4E-06 47.3 4.2 52 162-213 19-75 (236)
374 cd04113 Rab4 Rab4 subfamily. 94.0 0.044 9.6E-07 45.4 2.9 21 163-183 3-23 (161)
375 cd03259 ABC_Carb_Solutes_like 94.0 0.072 1.6E-06 46.7 4.4 23 161-183 27-49 (213)
376 COG1763 MobB Molybdopterin-gua 94.0 0.041 8.9E-07 45.8 2.7 24 160-183 2-25 (161)
377 PLN02165 adenylate isopentenyl 94.0 0.05 1.1E-06 50.7 3.4 24 160-183 43-66 (334)
378 TIGR02324 CP_lyasePhnL phospho 94.0 0.077 1.7E-06 46.9 4.6 34 161-197 35-68 (224)
379 TIGR01277 thiQ thiamine ABC tr 94.0 0.073 1.6E-06 46.7 4.4 33 161-196 25-57 (213)
380 PRK12608 transcription termina 94.0 0.25 5.5E-06 46.9 8.1 67 145-218 123-192 (380)
381 TIGR02528 EutP ethanolamine ut 94.0 0.044 9.6E-07 44.4 2.8 22 162-183 2-23 (142)
382 PRK13541 cytochrome c biogenes 94.0 0.076 1.6E-06 45.9 4.4 23 161-183 27-49 (195)
383 TIGR01189 ccmA heme ABC export 94.0 0.076 1.7E-06 46.0 4.5 34 161-197 27-60 (198)
384 PRK10463 hydrogenase nickel in 94.0 0.078 1.7E-06 48.5 4.6 26 158-183 102-127 (290)
385 cd03115 SRP The signal recogni 94.0 0.047 1E-06 46.1 3.1 22 162-183 2-23 (173)
386 TIGR01184 ntrCD nitrate transp 94.0 0.074 1.6E-06 47.3 4.5 23 161-183 12-34 (230)
387 cd01133 F1-ATPase_beta F1 ATP 94.0 0.056 1.2E-06 49.1 3.6 50 161-212 70-121 (274)
388 cd03292 ABC_FtsE_transporter F 94.0 0.074 1.6E-06 46.6 4.4 23 161-183 28-50 (214)
389 COG4608 AppF ABC-type oligopep 94.0 0.072 1.6E-06 47.8 4.2 55 160-217 39-98 (268)
390 cd04124 RabL2 RabL2 subfamily. 94.0 0.046 1E-06 45.5 2.9 21 163-183 3-23 (161)
391 PRK14974 cell division protein 94.0 0.051 1.1E-06 51.1 3.5 25 159-183 139-163 (336)
392 cd04136 Rap_like Rap-like subf 94.0 0.046 1E-06 45.3 2.9 22 162-183 3-24 (163)
393 PF02374 ArsA_ATPase: Anion-tr 94.0 0.071 1.5E-06 49.6 4.4 22 161-182 2-23 (305)
394 PRK14250 phosphate ABC transpo 94.0 0.075 1.6E-06 47.6 4.4 33 161-196 30-62 (241)
395 PRK11124 artP arginine transpo 94.0 0.074 1.6E-06 47.7 4.4 33 161-196 29-61 (242)
396 PRK11248 tauB taurine transpor 94.0 0.074 1.6E-06 48.1 4.5 23 161-183 28-50 (255)
397 PRK14722 flhF flagellar biosyn 93.9 0.054 1.2E-06 51.6 3.6 24 160-183 137-160 (374)
398 cd03219 ABC_Mj1267_LivG_branch 93.9 0.072 1.6E-06 47.5 4.3 33 161-196 27-59 (236)
399 cd01983 Fer4_NifH The Fer4_Nif 93.9 0.047 1E-06 40.7 2.7 22 162-183 1-22 (99)
400 cd01864 Rab19 Rab19 subfamily. 93.9 0.048 1E-06 45.5 2.9 23 161-183 4-26 (165)
401 TIGR00455 apsK adenylylsulfate 93.9 0.059 1.3E-06 46.1 3.5 25 159-183 17-41 (184)
402 PRK14528 adenylate kinase; Pro 93.9 0.048 1E-06 46.8 2.9 23 161-183 2-24 (186)
403 PRK09183 transposase/IS protei 93.9 0.044 9.5E-07 49.7 2.8 23 161-183 103-125 (259)
404 PF00406 ADK: Adenylate kinase 93.9 0.04 8.6E-07 45.5 2.3 19 165-183 1-19 (151)
405 cd04159 Arl10_like Arl10-like 93.9 0.047 1E-06 44.7 2.8 21 163-183 2-22 (159)
406 PRK13768 GTPase; Provisional 93.9 0.051 1.1E-06 49.1 3.2 23 161-183 3-25 (253)
407 PRK13230 nitrogenase reductase 93.9 0.047 1E-06 50.1 3.0 22 161-182 2-23 (279)
408 PRK05537 bifunctional sulfate 93.9 0.077 1.7E-06 53.7 4.8 26 158-183 390-415 (568)
409 cd03295 ABC_OpuCA_Osmoprotecti 93.9 0.079 1.7E-06 47.5 4.4 23 161-183 28-50 (242)
410 PRK02496 adk adenylate kinase; 93.9 0.045 9.7E-07 46.8 2.7 22 162-183 3-24 (184)
411 PRK12724 flagellar biosynthesi 93.9 0.085 1.9E-06 50.8 4.8 25 159-183 222-246 (432)
412 PRK09493 glnQ glutamine ABC tr 93.9 0.079 1.7E-06 47.4 4.4 33 161-196 28-60 (240)
413 PRK13232 nifH nitrogenase redu 93.9 0.048 1E-06 49.9 3.0 22 161-182 2-23 (273)
414 COG1136 SalX ABC-type antimicr 93.9 0.052 1.1E-06 47.7 3.1 22 161-182 32-53 (226)
415 cd00876 Ras Ras family. The R 93.9 0.05 1.1E-06 44.7 2.9 21 163-183 2-22 (160)
416 PRK13539 cytochrome c biogenes 93.9 0.084 1.8E-06 46.1 4.4 23 161-183 29-51 (207)
417 COG0542 clpA ATP-binding subun 93.9 1.3 2.8E-05 46.1 13.4 59 124-182 480-543 (786)
418 TIGR01351 adk adenylate kinase 93.9 0.044 9.6E-07 48.0 2.7 21 163-183 2-22 (210)
419 cd00154 Rab Rab family. Rab G 93.8 0.051 1.1E-06 44.4 2.9 22 163-184 3-24 (159)
420 cd03267 ABC_NatA_like Similar 93.8 0.082 1.8E-06 47.2 4.4 33 161-196 48-80 (236)
421 PF01695 IstB_IS21: IstB-like 93.8 0.048 1E-06 46.4 2.8 36 161-198 48-83 (178)
422 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 93.8 0.081 1.8E-06 46.9 4.3 33 161-196 49-81 (224)
423 PRK11058 GTPase HflX; Provisio 93.8 0.22 4.7E-06 48.6 7.6 57 119-183 164-220 (426)
424 PRK00698 tmk thymidylate kinas 93.8 0.052 1.1E-06 47.1 3.0 23 161-183 4-26 (205)
425 cd03238 ABC_UvrA The excision 93.8 0.052 1.1E-06 46.1 2.9 22 161-182 22-43 (176)
426 TIGR02239 recomb_RAD51 DNA rep 93.8 0.14 3E-06 47.9 5.9 56 159-215 95-154 (316)
427 cd03268 ABC_BcrA_bacitracin_re 93.8 0.087 1.9E-06 46.0 4.4 34 161-197 27-60 (208)
428 cd03258 ABC_MetN_methionine_tr 93.8 0.085 1.8E-06 46.9 4.4 23 161-183 32-54 (233)
429 cd03215 ABC_Carb_Monos_II This 93.8 0.089 1.9E-06 44.9 4.4 23 161-183 27-49 (182)
430 cd02026 PRK Phosphoribulokinas 93.8 0.043 9.4E-07 50.1 2.6 22 162-183 1-22 (273)
431 PRK09354 recA recombinase A; P 93.7 0.081 1.7E-06 49.8 4.3 43 159-203 59-101 (349)
432 cd03228 ABCC_MRP_Like The MRP 93.7 0.096 2.1E-06 44.2 4.5 23 161-183 29-51 (171)
433 COG0470 HolB ATPase involved i 93.7 0.59 1.3E-05 43.6 10.3 112 142-257 10-148 (325)
434 cd03246 ABCC_Protease_Secretio 93.7 0.094 2E-06 44.4 4.4 23 161-183 29-51 (173)
435 PRK11247 ssuB aliphatic sulfon 93.7 0.087 1.9E-06 47.7 4.4 23 161-183 39-61 (257)
436 TIGR01618 phage_P_loop phage n 93.7 0.053 1.1E-06 47.7 2.9 23 160-182 12-34 (220)
437 PRK07952 DNA replication prote 93.7 0.056 1.2E-06 48.5 3.1 37 160-198 99-135 (244)
438 PRK08533 flagellar accessory p 93.7 0.17 3.7E-06 45.0 6.2 48 160-211 24-71 (230)
439 cd03262 ABC_HisP_GlnQ_permease 93.7 0.091 2E-06 46.0 4.4 33 161-196 27-59 (213)
440 cd03254 ABCC_Glucan_exporter_l 93.7 0.09 2E-06 46.6 4.4 34 161-197 30-63 (229)
441 cd02040 NifH NifH gene encodes 93.7 0.053 1.1E-06 49.4 3.0 23 161-183 2-24 (270)
442 PRK10908 cell division protein 93.7 0.092 2E-06 46.4 4.4 33 161-196 29-61 (222)
443 cd03216 ABC_Carb_Monos_I This 93.7 0.1 2.2E-06 43.7 4.4 23 161-183 27-49 (163)
444 cd03114 ArgK-like The function 93.7 0.052 1.1E-06 44.7 2.6 22 162-183 1-22 (148)
445 PRK06921 hypothetical protein; 93.7 0.084 1.8E-06 48.1 4.2 38 160-199 117-155 (266)
446 KOG1514 Origin recognition com 93.7 2.8 6.2E-05 42.7 14.9 96 123-220 379-487 (767)
447 cd03252 ABCC_Hemolysin The ABC 93.7 0.092 2E-06 46.9 4.4 33 161-196 29-61 (237)
448 cd03214 ABC_Iron-Siderophores_ 93.6 0.1 2.2E-06 44.5 4.5 33 161-196 26-58 (180)
449 PF00071 Ras: Ras family; Int 93.6 0.057 1.2E-06 44.7 2.9 22 163-184 2-23 (162)
450 cd03257 ABC_NikE_OppD_transpor 93.6 0.093 2E-06 46.5 4.4 23 161-183 32-54 (228)
451 cd00879 Sar1 Sar1 subfamily. 93.6 0.058 1.3E-06 46.2 3.0 24 160-183 19-42 (190)
452 PRK13648 cbiO cobalt transport 93.6 0.09 2E-06 48.0 4.4 23 161-183 36-58 (269)
453 TIGR01243 CDC48 AAA family ATP 93.6 0.39 8.4E-06 50.5 9.6 146 160-315 487-657 (733)
454 cd03245 ABCC_bacteriocin_expor 93.6 0.089 1.9E-06 46.3 4.2 34 161-197 31-64 (220)
455 PRK00279 adk adenylate kinase; 93.6 0.052 1.1E-06 47.7 2.7 22 162-183 2-23 (215)
456 PLN03046 D-glycerate 3-kinase; 93.6 0.071 1.5E-06 51.1 3.7 25 158-182 210-234 (460)
457 cd03244 ABCC_MRP_domain2 Domai 93.6 0.098 2.1E-06 46.1 4.4 34 161-197 31-64 (221)
458 cd03249 ABC_MTABC3_MDL1_MDL2 M 93.6 0.096 2.1E-06 46.8 4.4 33 161-196 30-62 (238)
459 PF13604 AAA_30: AAA domain; P 93.6 0.12 2.6E-06 44.7 4.9 23 161-183 19-41 (196)
460 TIGR00959 ffh signal recogniti 93.6 0.23 5.1E-06 48.3 7.3 25 158-182 97-121 (428)
461 TIGR03410 urea_trans_UrtE urea 93.6 0.097 2.1E-06 46.5 4.4 33 161-196 27-59 (230)
462 PRK07429 phosphoribulokinase; 93.6 0.077 1.7E-06 49.8 3.9 26 158-183 6-31 (327)
463 cd04177 RSR1 RSR1 subgroup. R 93.5 0.06 1.3E-06 45.1 2.9 22 163-184 4-25 (168)
464 cd03231 ABC_CcmA_heme_exporter 93.5 0.1 2.3E-06 45.3 4.5 34 161-197 27-60 (201)
465 TIGR03740 galliderm_ABC gallid 93.5 0.1 2.2E-06 46.1 4.4 33 161-196 27-59 (223)
466 PRK12338 hypothetical protein; 93.5 0.064 1.4E-06 49.8 3.2 24 160-183 4-27 (319)
467 cd00878 Arf_Arl Arf (ADP-ribos 93.5 0.061 1.3E-06 44.4 2.9 22 163-184 2-23 (158)
468 cd03247 ABCC_cytochrome_bd The 93.5 0.11 2.3E-06 44.2 4.4 23 161-183 29-51 (178)
469 PRK10867 signal recognition pa 93.5 0.12 2.7E-06 50.2 5.3 25 158-182 98-122 (433)
470 PRK11300 livG leucine/isoleuci 93.5 0.099 2.1E-06 47.2 4.4 33 161-196 32-64 (255)
471 PRK11701 phnK phosphonate C-P 93.5 0.1 2.2E-06 47.3 4.5 23 161-183 33-55 (258)
472 PRK06835 DNA replication prote 93.5 0.057 1.2E-06 50.7 2.9 37 161-199 184-220 (329)
473 cd03294 ABC_Pro_Gly_Bertaine T 93.5 0.099 2.1E-06 47.7 4.4 23 161-183 51-73 (269)
474 cd03260 ABC_PstB_phosphate_tra 93.5 0.063 1.4E-06 47.6 3.1 23 161-183 27-49 (227)
475 cd04137 RheB Rheb (Ras Homolog 93.5 0.067 1.5E-06 45.3 3.2 23 161-183 2-24 (180)
476 TIGR03878 thermo_KaiC_2 KaiC d 93.5 0.094 2E-06 47.6 4.2 40 159-200 35-74 (259)
477 TIGR00750 lao LAO/AO transport 93.5 0.086 1.9E-06 49.0 4.0 27 157-183 31-57 (300)
478 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 93.5 0.065 1.4E-06 44.7 3.0 22 162-183 4-25 (166)
479 PRK15177 Vi polysaccharide exp 93.5 0.064 1.4E-06 47.1 3.0 23 161-183 14-36 (213)
480 COG1121 ZnuC ABC-type Mn/Zn tr 93.4 0.11 2.3E-06 46.6 4.3 22 161-182 31-52 (254)
481 cd04101 RabL4 RabL4 (Rab-like4 93.4 0.067 1.5E-06 44.4 3.0 21 163-183 3-23 (164)
482 cd00157 Rho Rho (Ras homology) 93.4 0.066 1.4E-06 44.7 2.9 21 163-183 3-23 (171)
483 COG0703 AroK Shikimate kinase 93.4 0.063 1.4E-06 45.0 2.7 23 161-183 3-25 (172)
484 cd01860 Rab5_related Rab5-rela 93.4 0.068 1.5E-06 44.3 3.0 23 162-184 3-25 (163)
485 PRK11831 putative ABC transpor 93.4 0.1 2.2E-06 47.6 4.4 23 161-183 34-56 (269)
486 PF06745 KaiC: KaiC; InterPro 93.4 0.12 2.7E-06 45.7 4.7 42 159-201 18-59 (226)
487 cd04162 Arl9_Arfrp2_like Arl9/ 93.4 0.068 1.5E-06 44.7 2.9 21 163-183 2-22 (164)
488 cd03251 ABCC_MsbA MsbA is an e 93.4 0.11 2.4E-06 46.3 4.4 33 161-196 29-61 (234)
489 cd04123 Rab21 Rab21 subfamily. 93.4 0.069 1.5E-06 44.0 2.9 21 163-183 3-23 (162)
490 PF06564 YhjQ: YhjQ protein; 93.4 0.069 1.5E-06 47.6 3.0 22 161-182 2-24 (243)
491 cd03233 ABC_PDR_domain1 The pl 93.3 0.1 2.3E-06 45.3 4.1 23 161-183 34-56 (202)
492 cd04140 ARHI_like ARHI subfami 93.3 0.069 1.5E-06 44.5 2.9 22 162-183 3-24 (165)
493 PLN00020 ribulose bisphosphate 93.3 0.066 1.4E-06 50.5 2.9 26 158-183 146-171 (413)
494 cd03223 ABCD_peroxisomal_ALDP 93.3 0.12 2.6E-06 43.4 4.4 23 161-183 28-50 (166)
495 cd03298 ABC_ThiQ_thiamine_tran 93.3 0.11 2.5E-06 45.3 4.4 23 161-183 25-47 (211)
496 cd01876 YihA_EngB The YihA (En 93.3 0.065 1.4E-06 44.3 2.7 20 163-182 2-21 (170)
497 PRK14730 coaE dephospho-CoA ki 93.3 0.07 1.5E-06 46.2 3.0 22 161-182 2-23 (195)
498 cd02029 PRK_like Phosphoribulo 93.3 0.059 1.3E-06 48.6 2.5 22 162-183 1-22 (277)
499 cd03237 ABC_RNaseL_inhibitor_d 93.3 0.07 1.5E-06 48.0 3.0 23 161-183 26-48 (246)
500 PRK13543 cytochrome c biogenes 93.3 0.11 2.5E-06 45.5 4.4 23 161-183 38-60 (214)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=3.6e-47 Score=390.60 Aligned_cols=347 Identities=23% Similarity=0.379 Sum_probs=275.5
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhccccccccchhhhh
Q 038448 21 PKAEPGRSDEWKKILVKINEVLDDAEEKQNTEQSVKMWLGDLQNLAYDVDDLLDELETEAFRRNLMFQEPAAAQTTTTKF 100 (385)
Q Consensus 21 ~~~v~~~l~~l~~~L~~i~~~l~~ae~~~~~~~~~~~Wl~~lr~~ayd~eD~lD~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (385)
..++.+.+..|++.|..++.++++++.++.....+..|...+++++|++||.++.|.......+..+ .-. .....
T Consensus 23 ~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~----~l~-~~~~~ 97 (889)
T KOG4658|consen 23 LDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKAND----LLS-TRSVE 97 (889)
T ss_pred HhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----Hhh-hhHHH
Confidence 4577789999999999999999999999888899999999999999999999999998886654322 000 00001
Q ss_pred hccccccccCCCcchhhhhHHHHHHHHHHHHHHHHhh------------------------------hhhhHHHHHHHHh
Q 038448 101 RRLIPSCCTNFSPQAIKFDHMMAAKIEDRTIRLQEIE------------------------------KDKEKEETVKLLL 150 (385)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~i~------------------------------~~~~~~~l~~~L~ 150 (385)
.+.+ |+..+........+.+.+++..+...++.+. .+...+++++.|.
T Consensus 98 ~~~~--c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~VG~e~~~~kl~~~L~ 175 (889)
T KOG4658|consen 98 RQRL--CLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESDVGLETMLEKLWNRLM 175 (889)
T ss_pred HHHH--hhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCccccccHHHHHHHHHHHhc
Confidence 1111 1111211122223344555555444443332 2456778888887
Q ss_pred cCCCCCCCCceEEEEEcCCCCcHHHHHHHHhcccc-ccccccceEEEEecCCCCHHHHHHHHHHHhhcCCCCCcc-chHH
Q 038448 151 RDDLRTDDGLSVIPIIGTGRIGKTTLAQLAYSDVR-VHNHFDLKAWTCVSEDFDIIRVTKSILKSIASDQLVDDH-DLNL 228 (385)
Q Consensus 151 ~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~-~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~-~~~~ 228 (385)
.++ ..+++|+||||+||||||+.++|+.. ++.+|+.++||+||+.|+...++.+|+..++........ ..+.
T Consensus 176 ~d~------~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~ 249 (889)
T KOG4658|consen 176 EDD------VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDE 249 (889)
T ss_pred cCC------CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHH
Confidence 653 29999999999999999999999988 999999999999999999999999999998875442111 1122
Q ss_pred --------------------hhchhhHhhHhhhccCCCCCcEEEEEcCChhHHhh-cCCCCcccCCCCChhhHHhhhhcc
Q 038448 229 --------------------LQKYNDWTNRSRLFEAGAPGSKIVFTTRNLGVAEK-MGPLPAYPLKELSNDDCLSVFSPH 287 (385)
Q Consensus 229 --------------------l~~~~~w~~l~~~l~~~~~gs~IivTTR~~~va~~-~~~~~~~~l~~L~~~~a~~Lf~~~ 287 (385)
++...+|+.+..++|...+||+|++|||+..|+.. ++....++++.|++++||.||++.
T Consensus 250 ~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~ 329 (889)
T KOG4658|consen 250 LASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKK 329 (889)
T ss_pred HHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHh
Confidence 22566788899999999899999999999999998 777788999999999999999999
Q ss_pred ccCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHHHHhh-----------------------------------------
Q 038448 288 SLGEKDFSTHPSLKEIGEKIVKKCNGLPLVAKSLGGLLR----------------------------------------- 326 (385)
Q Consensus 288 a~~~~~~~~~~~l~~~~~~i~~~c~glPLAi~~~~~~L~----------------------------------------- 326 (385)
+|..... ..+.+.++|++++++|+|+|||++++|++|+
T Consensus 330 v~~~~~~-~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L 408 (889)
T KOG4658|consen 330 VGPNTLG-SHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNL 408 (889)
T ss_pred hcccccc-ccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhh
Confidence 9876332 2345899999999999999999999999999
Q ss_pred --------------------------------cccCCCCccCcHHHHHHHHHHHHHhccccceecC--CCCceeEchhHH
Q 038448 327 --------------------------------GFLNHESDKKQMENLGRKYFQELYSRLFFQLSSS--NKSLFVMHDLNN 372 (385)
Q Consensus 327 --------------------------------g~~~~~~~~~~~e~~~~~~~~~Lv~rsll~~~~~--~~~~~~mHdlv~ 372 (385)
||+.+...+.++++.|+.|+.+|+++||++.... ....|.|||+||
T Consensus 409 ~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvR 488 (889)
T KOG4658|consen 409 PEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVR 488 (889)
T ss_pred hHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHH
Confidence 8888767788999999999999999999998763 445699999999
Q ss_pred HHHHHhhcc
Q 038448 373 DLLNGLHGR 381 (385)
Q Consensus 373 d~a~~~s~~ 381 (385)
|+|.++|++
T Consensus 489 e~al~ias~ 497 (889)
T KOG4658|consen 489 EMALWIASD 497 (889)
T ss_pred HHHHHHhcc
Confidence 999999994
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.96 E-value=1.4e-27 Score=257.19 Aligned_cols=234 Identities=17% Similarity=0.270 Sum_probs=165.7
Q ss_pred hhhHHHHHHHHhcCCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEe---cCC-----------CC-
Q 038448 139 DKEKEETVKLLLRDDLRTDDGLSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCV---SED-----------FD- 203 (385)
Q Consensus 139 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v---s~~-----------~~- 203 (385)
+...+++..+|.. ..+++++|+||||||+||||||+.+|+. +..+|+..+|+.. +.. ++
T Consensus 190 ~~~l~~l~~lL~l----~~~~~~vvgI~G~gGiGKTTLA~~l~~~--l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~ 263 (1153)
T PLN03210 190 EDHIAKMSSLLHL----ESEEVRMVGIWGSSGIGKTTIARALFSR--LSRQFQSSVFIDRAFISKSMEIYSSANPDDYNM 263 (1153)
T ss_pred HHHHHHHHHHHcc----ccCceEEEEEEcCCCCchHHHHHHHHHH--HhhcCCeEEEeeccccccchhhcccccccccch
Confidence 5555666666633 2346899999999999999999999995 7788998888742 111 11
Q ss_pred HHHHHHHHHHHhhcCCCCCccc----------------hHHhhchhhHhhHhhhccCCCCCcEEEEEcCChhHHhhcCCC
Q 038448 204 IIRVTKSILKSIASDQLVDDHD----------------LNLLQKYNDWTNRSRLFEAGAPGSKIVFTTRNLGVAEKMGPL 267 (385)
Q Consensus 204 ~~~~~~~il~~l~~~~~~~~~~----------------~~~l~~~~~w~~l~~~l~~~~~gs~IivTTR~~~va~~~~~~ 267 (385)
...+...++..+.......... +|.+.+...|+.+.......++||+||||||+..++..++..
T Consensus 264 ~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~ 343 (1153)
T PLN03210 264 KLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGID 343 (1153)
T ss_pred hHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCC
Confidence 1234445555443322111111 112224456777776666667899999999999999887777
Q ss_pred CcccCCCCChhhHHhhhhccccCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHHHHhhc--------------------
Q 038448 268 PAYPLKELSNDDCLSVFSPHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVAKSLGGLLRG-------------------- 327 (385)
Q Consensus 268 ~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~c~glPLAi~~~~~~L~g-------------------- 327 (385)
.+|++..|+.++||+||+++||+... +++++.+++++|+++|+|+|||++++|++|+|
T Consensus 344 ~~~~v~~l~~~ea~~LF~~~Af~~~~--~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~~~~~ 421 (1153)
T PLN03210 344 HIYEVCLPSNELALEMFCRSAFKKNS--PPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNGLDGK 421 (1153)
T ss_pred eEEEecCCCHHHHHHHHHHHhcCCCC--CcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHhCccHH
Confidence 89999999999999999999997643 34568899999999999999999999999981
Q ss_pred -----------ccC-----------CCCccCcHHHH----------HHHHHHHHHhccccceecCCCCceeEchhHHHHH
Q 038448 328 -----------FLN-----------HESDKKQMENL----------GRKYFQELYSRLFFQLSSSNKSLFVMHDLNNDLL 375 (385)
Q Consensus 328 -----------~~~-----------~~~~~~~~e~~----------~~~~~~~Lv~rsll~~~~~~~~~~~mHdlv~d~a 375 (385)
+-. ....+...+.+ ++.-++.|+++||++... ..|.|||++|++|
T Consensus 422 I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L~~ksLi~~~~---~~~~MHdLl~~~~ 498 (1153)
T PLN03210 422 IEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVRE---DIVEMHSLLQEMG 498 (1153)
T ss_pred HHHHHHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhChHHHHhcCCEEEcC---CeEEhhhHHHHHH
Confidence 100 00001111111 112378899999998753 4599999999999
Q ss_pred HHhhcccc
Q 038448 376 NGLHGRFT 383 (385)
Q Consensus 376 ~~~s~~e~ 383 (385)
+.++.++.
T Consensus 499 r~i~~~~~ 506 (1153)
T PLN03210 499 KEIVRAQS 506 (1153)
T ss_pred HHHHHhhc
Confidence 99987764
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.96 E-value=1.1e-28 Score=228.17 Aligned_cols=183 Identities=31% Similarity=0.503 Sum_probs=139.0
Q ss_pred hhhHHHHHHHHhcCCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCCCCHHHHHHHHHHHhhcC
Q 038448 139 DKEKEETVKLLLRDDLRTDDGLSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSEDFDIIRVTKSILKSIASD 218 (385)
Q Consensus 139 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~ 218 (385)
+.+.++|.++|.... ++.++|+|+||||+||||||..+|++..++.+|+.++|++++...+...++..|+.++...
T Consensus 2 e~~~~~l~~~L~~~~----~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~ 77 (287)
T PF00931_consen 2 EKEIEKLKDWLLDNS----NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEP 77 (287)
T ss_dssp HHHHHHHHHHHHTTT----TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhhCCC----CCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccccccccccccccccc
Confidence 567889999997733 5789999999999999999999999877899999999999999999999999999999877
Q ss_pred CCC--CccchHHh----h----------------chhhHhhHhhhccCCCCCcEEEEEcCChhHHhhcCC-CCcccCCCC
Q 038448 219 QLV--DDHDLNLL----Q----------------KYNDWTNRSRLFEAGAPGSKIVFTTRNLGVAEKMGP-LPAYPLKEL 275 (385)
Q Consensus 219 ~~~--~~~~~~~l----~----------------~~~~w~~l~~~l~~~~~gs~IivTTR~~~va~~~~~-~~~~~l~~L 275 (385)
... ...+.+.+ . +...|+.+...++....||+||||||+..++..++. ...+++.+|
T Consensus 78 ~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L 157 (287)
T PF00931_consen 78 DSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPL 157 (287)
T ss_dssp -STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS-
T ss_pred ccccccccccccccccchhhhccccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 431 11222111 1 556787888888887789999999999999876654 568999999
Q ss_pred ChhhHHhhhhccccCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHHHHhh
Q 038448 276 SNDDCLSVFSPHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVAKSLGGLLR 326 (385)
Q Consensus 276 ~~~~a~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~c~glPLAi~~~~~~L~ 326 (385)
+.++|++||.+.++... ...++.+.+.+++|+++|+|+||||+++|++|+
T Consensus 158 ~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~ 207 (287)
T PF00931_consen 158 SEEEALELFKKRAGRKE-SESPEDLEDLAKEIVEKCGGLPLALKLIASYLR 207 (287)
T ss_dssp -HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-HHHHHHHHHHHH
T ss_pred ccccccccccccccccc-ccccccccccccccccccccccccccccccccc
Confidence 99999999999987654 223345567899999999999999999999995
No 4
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.10 E-value=7.6e-09 Score=110.72 Aligned_cols=208 Identities=13% Similarity=0.119 Sum_probs=125.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecC-CCCHHHHHHHHHHHhhcCCCCC---c---------cc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSE-DFDIIRVTKSILKSIASDQLVD---D---------HD 225 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~il~~l~~~~~~~---~---------~~ 225 (385)
..+++.|+|++|.||||++...... ++.++|+++.. +.+...++..++..+....... . ..
T Consensus 31 ~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 104 (903)
T PRK04841 31 NYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYAS 104 (903)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCC
Confidence 5689999999999999999988753 23689999974 4456667777777774221100 0 11
Q ss_pred hH--------Hhh----------ch------hhHh-hHhhhccCCCCCcEEEEEcCChhHH---hhcCCCCcccCC----
Q 038448 226 LN--------LLQ----------KY------NDWT-NRSRLFEAGAPGSKIVFTTRNLGVA---EKMGPLPAYPLK---- 273 (385)
Q Consensus 226 ~~--------~l~----------~~------~~w~-~l~~~l~~~~~gs~IivTTR~~~va---~~~~~~~~~~l~---- 273 (385)
.. .+. ++ .... .+...++....+.++|||||...-. ...-......+.
T Consensus 105 ~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l 184 (903)
T PRK04841 105 LSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQL 184 (903)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhHHhcCcceecCHHhC
Confidence 10 110 11 1112 2323333345567888999973211 110112234455
Q ss_pred CCChhhHHhhhhccccCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHHHHhhcccC-------CCC--ccCcHH-----
Q 038448 274 ELSNDDCLSVFSPHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVAKSLGGLLRGFLN-------HES--DKKQME----- 339 (385)
Q Consensus 274 ~L~~~~a~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~c~glPLAi~~~~~~L~g~~~-------~~~--~~~~~e----- 339 (385)
+|+.+|+..||....... --.+....|.+.|+|.|+++..++..+.+--. ... ....+.
T Consensus 185 ~f~~~e~~~ll~~~~~~~-------~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 257 (903)
T PRK04841 185 AFDHQEAQQFFDQRLSSP-------IEAAESSRLCDDVEGWATALQLIALSARQNNSSLHDSARRLAGINASHLSDYLVE 257 (903)
T ss_pred CCCHHHHHHHHHhccCCC-------CCHHHHHHHHHHhCChHHHHHHHHHHHhhCCCchhhhhHhhcCCCchhHHHHHHH
Confidence 899999999997653211 11355678999999999999988865541100 000 000000
Q ss_pred ----------------------------------HHHHHHHHHHHhccccce-ecCCCCceeEchhHHHHHHHhh
Q 038448 340 ----------------------------------NLGRKYFQELYSRLFFQL-SSSNKSLFVMHDLNNDLLNGLH 379 (385)
Q Consensus 340 ----------------------------------~~~~~~~~~Lv~rsll~~-~~~~~~~~~mHdlv~d~a~~~s 379 (385)
+-+...+++|...++|.. ...+...|+.|++++++.+...
T Consensus 258 ~v~~~l~~~~~~~l~~~a~~~~~~~~l~~~l~~~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 258 EVLDNVDLETRHFLLRCSVLRSMNDALIVRVTGEENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred HHHhcCCHHHHHHHHHhcccccCCHHHHHHHcCCCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 013467889999998754 3334456999999999998765
No 5
>PRK06893 DNA replication initiation factor; Validated
Probab=98.72 E-value=8.5e-08 Score=85.46 Aligned_cols=154 Identities=14% Similarity=0.183 Sum_probs=93.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCCCCHHHHHHHHHHHhhcCCCCCccchHHhhchhhHhh-Hh
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSEDFDIIRVTKSILKSIASDQLVDDHDLNLLQKYNDWTN-RS 239 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~~~w~~-l~ 239 (385)
+.+.|+|++|+|||+|++.+++. .......+.|++++.. ......++..+...+.-..+++..+.....|+. +.
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~y~~~~~~---~~~~~~~~~~~~~~dlLilDDi~~~~~~~~~~~~l~ 114 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNH--YLLNQRTAIYIPLSKS---QYFSPAVLENLEQQDLVCLDDLQAVIGNEEWELAIF 114 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEeeHHHh---hhhhHHHHhhcccCCEEEEeChhhhcCChHHHHHHH
Confidence 57899999999999999999986 3333445677776531 112223444333222112233333334556663 33
Q ss_pred hhccCC-CCCcEEEE-EcCC---------hhHHhhcCCCCcccCCCCChhhHHhhhhccccCCCCCCCCccHHHHHHHHH
Q 038448 240 RLFEAG-APGSKIVF-TTRN---------LGVAEKMGPLPAYPLKELSNDDCLSVFSPHSLGEKDFSTHPSLKEIGEKIV 308 (385)
Q Consensus 240 ~~l~~~-~~gs~Iiv-TTR~---------~~va~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~l~~~~~~i~ 308 (385)
..+... ..|+.+|| |+.. +.+...+.....+++++++.++.+.++.+.++... ...+ .++..-|+
T Consensus 115 ~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~-l~l~---~~v~~~L~ 190 (229)
T PRK06893 115 DLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRG-IELS---DEVANFLL 190 (229)
T ss_pred HHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcC-CCCC---HHHHHHHH
Confidence 334322 24556654 4543 46666666667899999999999999998875432 1112 46677788
Q ss_pred HHcCCChHHHHHHHH
Q 038448 309 KKCNGLPLVAKSLGG 323 (385)
Q Consensus 309 ~~c~glPLAi~~~~~ 323 (385)
+.+.|-.-++..+-.
T Consensus 191 ~~~~~d~r~l~~~l~ 205 (229)
T PRK06893 191 KRLDRDMHTLFDALD 205 (229)
T ss_pred HhccCCHHHHHHHHH
Confidence 888877655544433
No 6
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.71 E-value=7.5e-07 Score=81.45 Aligned_cols=163 Identities=15% Similarity=0.076 Sum_probs=94.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCCCCHHHHHHHHHHHhhcCCCCCcc--chHHhh-------
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSEDFDIIRVTKSILKSIASDQLVDDH--DLNLLQ------- 230 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~--~~~~l~------- 230 (385)
..++.|+|++|+|||||++.+++.... ..+ ..+|+. ....+..+++..|+..++........ ....+.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~~~-~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~ 119 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAKLV-NTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQF 119 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEeeee-CCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 468899999999999999999986321 111 123332 33456778888888887654321100 011110
Q ss_pred ----------------chhhHhhHhhhccC---CCCCcEEEEEcCChhHHhhcC----------CCCcccCCCCChhhHH
Q 038448 231 ----------------KYNDWTNRSRLFEA---GAPGSKIVFTTRNLGVAEKMG----------PLPAYPLKELSNDDCL 281 (385)
Q Consensus 231 ----------------~~~~w~~l~~~l~~---~~~gs~IivTTR~~~va~~~~----------~~~~~~l~~L~~~~a~ 281 (385)
....++.+...... ......|++|... ....... ....+++.+|+.++..
T Consensus 120 ~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~-~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~ 198 (269)
T TIGR03015 120 AAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQP-EFRETLQSPQLQQLRQRIIASCHLGPLDREETR 198 (269)
T ss_pred hCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCH-HHHHHHcCchhHHHHhheeeeeeCCCCCHHHHH
Confidence 22334444322211 1122244555543 2222211 1235789999999998
Q ss_pred hhhhccccCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHHHHhh
Q 038448 282 SVFSPHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVAKSLGGLLR 326 (385)
Q Consensus 282 ~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~c~glPLAi~~~~~~L~ 326 (385)
.++...+..........-..+..+.|++.|+|.|..|..++..+-
T Consensus 199 ~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~~ 243 (269)
T TIGR03015 199 EYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRLL 243 (269)
T ss_pred HHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHHH
Confidence 888766422111111112347788999999999999999998764
No 7
>PF05729 NACHT: NACHT domain
Probab=98.60 E-value=2e-07 Score=78.40 Aligned_cols=127 Identities=17% Similarity=0.192 Sum_probs=74.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcccccccc----ccceEEEEecCCCCHH---HHHHHHHHHhhcCCCC------------
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHNH----FDLKAWTCVSEDFDII---RVTKSILKSIASDQLV------------ 221 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~~~wv~vs~~~~~~---~~~~~il~~l~~~~~~------------ 221 (385)
+++.|+|.+|+||||+++.++.+...... +...+|++........ .+...|..+.......
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKN 80 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcC
Confidence 57899999999999999998876433222 4456677655532221 2333333332221110
Q ss_pred -----CccchHHhhc-hh-----hHhh-HhhhccC-CCCCcEEEEEcCChhH---HhhcCCCCcccCCCCChhhHHhhhh
Q 038448 222 -----DDHDLNLLQK-YN-----DWTN-RSRLFEA-GAPGSKIVFTTRNLGV---AEKMGPLPAYPLKELSNDDCLSVFS 285 (385)
Q Consensus 222 -----~~~~~~~l~~-~~-----~w~~-l~~~l~~-~~~gs~IivTTR~~~v---a~~~~~~~~~~l~~L~~~~a~~Lf~ 285 (385)
-.+.++++.. .. .+.. +...++. ..++.++|||||.... .........+.+.+|++++..+++.
T Consensus 81 ~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 160 (166)
T PF05729_consen 81 KRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQYLR 160 (166)
T ss_pred CceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHHHHH
Confidence 1122333332 11 2333 2223332 3568999999998766 3334444678999999999999887
Q ss_pred cc
Q 038448 286 PH 287 (385)
Q Consensus 286 ~~ 287 (385)
+.
T Consensus 161 ~~ 162 (166)
T PF05729_consen 161 KY 162 (166)
T ss_pred HH
Confidence 64
No 8
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.50 E-value=2.8e-06 Score=85.75 Aligned_cols=224 Identities=17% Similarity=0.152 Sum_probs=136.1
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCC-CCHHHHHHHHHHHhhcCCCC
Q 038448 143 EETVKLLLRDDLRTDDGLSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSED-FDIIRVTKSILKSIASDQLV 221 (385)
Q Consensus 143 ~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~il~~l~~~~~~ 221 (385)
..+++.|.. ..+.+.+.|..++|.|||||+-..... ...=..+.|.+.++. -++..++.-++..+....+.
T Consensus 25 ~rL~~~L~~-----~~~~RL~li~APAGfGKttl~aq~~~~---~~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~ 96 (894)
T COG2909 25 PRLLDRLRR-----ANDYRLILISAPAGFGKTTLLAQWREL---AADGAAVAWLSLDESDNDPARFLSYLIAALQQATPT 96 (894)
T ss_pred HHHHHHHhc-----CCCceEEEEeCCCCCcHHHHHHHHHHh---cCcccceeEeecCCccCCHHHHHHHHHHHHHHhCcc
Confidence 445555533 247899999999999999999888641 122346899998864 56788888888888754432
Q ss_pred CccchHH-hh---------------------------chhhHhh---------HhhhccCCCCCcEEEEEcCChhHHhhc
Q 038448 222 DDHDLNL-LQ---------------------------KYNDWTN---------RSRLFEAGAPGSKIVFTTRNLGVAEKM 264 (385)
Q Consensus 222 ~~~~~~~-l~---------------------------~~~~w~~---------l~~~l~~~~~gs~IivTTR~~~va~~~ 264 (385)
..++... ++ -.++|.. +...+.....+-.+|||||+..-...-
T Consensus 97 ~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la 176 (894)
T COG2909 97 LGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLA 176 (894)
T ss_pred ccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCccc
Confidence 1111111 11 1122222 222233445677899999975432211
Q ss_pred C---CCCcccC----CCCChhhHHhhhhccccCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHHHHhh------cccCC
Q 038448 265 G---PLPAYPL----KELSNDDCLSVFSPHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVAKSLGGLLR------GFLNH 331 (385)
Q Consensus 265 ~---~~~~~~l----~~L~~~~a~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~c~glPLAi~~~~~~L~------g~~~~ 331 (385)
. ....+++ -.++.+|+-.+|...... +--....+.+.+...|.+-|+..++=.++ +++..
T Consensus 177 ~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l-------~Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~ 249 (894)
T COG2909 177 RLRLRDELLEIGSEELRFDTEEAAAFLNDRGSL-------PLDAADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRG 249 (894)
T ss_pred ceeehhhHHhcChHhhcCChHHHHHHHHHcCCC-------CCChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhh
Confidence 1 1122222 257889999999866311 11134567899999999999888876665 00000
Q ss_pred CC---------------c-------------------------cCcHHHHHHHHHHHHHhccccce-ecCCCCceeEchh
Q 038448 332 ES---------------D-------------------------KKQMENLGRKYFQELYSRLFFQL-SSSNKSLFVMHDL 370 (385)
Q Consensus 332 ~~---------------~-------------------------~~~~e~~~~~~~~~Lv~rsll~~-~~~~~~~~~mHdl 370 (385)
.. + .-+-++-|...+++|.+++||-. -++....|+.|.|
T Consensus 250 LsG~~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f~~eL~~~Ltg~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~L 329 (894)
T COG2909 250 LSGAASHLSDYLVEEVLDRLPPELRDFLLQTSVLSRFNDELCNALTGEENGQAMLEELERRGLFLQRLDDEGQWFRYHHL 329 (894)
T ss_pred ccchHHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHhhHHHHHHHhcCCcHHHHHHHHHhCCCceeeecCCCceeehhHH
Confidence 00 0 00011225567899999998864 4455567999999
Q ss_pred HHHHHHHhhcc
Q 038448 371 NNDLLNGLHGR 381 (385)
Q Consensus 371 v~d~a~~~s~~ 381 (385)
+.||.+.-...
T Consensus 330 FaeFL~~r~~~ 340 (894)
T COG2909 330 FAEFLRQRLQR 340 (894)
T ss_pred HHHHHHhhhcc
Confidence 99998875544
No 9
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.39 E-value=1e-05 Score=78.26 Aligned_cols=164 Identities=10% Similarity=0.082 Sum_probs=87.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCCCCHHHHHHHHHHHhhcCCCC-Cccch-----------
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSEDFDIIRVTKSILKSIASDQLV-DDHDL----------- 226 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~-~~~~~----------- 226 (385)
....+.|+|++|+|||++++.++++.......-..++++.....+...++..|+.++...... .....
T Consensus 54 ~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l 133 (394)
T PRK00411 54 RPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYL 133 (394)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHH
Confidence 335578999999999999999998632222122345666665567778888888888652110 11011
Q ss_pred -----------HHhhc------hhhHhhHhhhccCCCCCcE--EEEEcCChhHHhhcC-------CCCcccCCCCChhhH
Q 038448 227 -----------NLLQK------YNDWTNRSRLFEAGAPGSK--IVFTTRNLGVAEKMG-------PLPAYPLKELSNDDC 280 (385)
Q Consensus 227 -----------~~l~~------~~~w~~l~~~l~~~~~gs~--IivTTR~~~va~~~~-------~~~~~~l~~L~~~~a 280 (385)
|+++. .+.+..+...+. ...+++ +|.++....+..... ....+.+.+++.++.
T Consensus 134 ~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~-~~~~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~ 212 (394)
T PRK00411 134 DERDRVLIVALDDINYLFEKEGNDVLYSLLRAHE-EYPGARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEI 212 (394)
T ss_pred HhcCCEEEEEECCHhHhhccCCchHHHHHHHhhh-ccCCCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHH
Confidence 11111 111222222222 123334 566666544333221 124578999999999
Q ss_pred HhhhhccccCC--CCCCCCccHHHHHHHHHHHcCCChHHHHHHHH
Q 038448 281 LSVFSPHSLGE--KDFSTHPSLKEIGEKIVKKCNGLPLVAKSLGG 323 (385)
Q Consensus 281 ~~Lf~~~a~~~--~~~~~~~~l~~~~~~i~~~c~glPLAi~~~~~ 323 (385)
.+++..++-.. .....+..+..+++......|..+.|+.++-.
T Consensus 213 ~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~ 257 (394)
T PRK00411 213 FDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRR 257 (394)
T ss_pred HHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 99888765211 11112222333333333335667777777643
No 10
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.38 E-value=3.2e-06 Score=75.13 Aligned_cols=158 Identities=14% Similarity=0.211 Sum_probs=88.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCCCCHHHHHHHHHHHhhcCCCCCccchHHhhchhhHhh-
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSEDFDIIRVTKSILKSIASDQLVDDHDLNLLQKYNDWTN- 237 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~~~w~~- 237 (385)
....+.|+|.+|+|||+||+.+++. ........++++.+.-.+ -...++..+.....-..++.+.+.....|..
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~--~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~lLvIDdi~~l~~~~~~~~~ 111 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAA--AEERGKSAIYLPLAELAQ---ADPEVLEGLEQADLVCLDDVEAIAGQPEWQEA 111 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH--HHhcCCcEEEEeHHHHHH---hHHHHHhhcccCCEEEEeChhhhcCChHHHHH
Confidence 3468889999999999999999875 222334456666543221 1123333332221112344444433333433
Q ss_pred HhhhccC-CCCCcEEEEEcCChh---------HHhhcCCCCcccCCCCChhhHHhhhhccccCCCCCCCCccHHHHHHHH
Q 038448 238 RSRLFEA-GAPGSKIVFTTRNLG---------VAEKMGPLPAYPLKELSNDDCLSVFSPHSLGEKDFSTHPSLKEIGEKI 307 (385)
Q Consensus 238 l~~~l~~-~~~gs~IivTTR~~~---------va~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~l~~~~~~i 307 (385)
+...+.. ...+.++|+||+... +...+.....+.+.+++.++...++...+-.. .... -.+....|
T Consensus 112 L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~-~~~~---~~~~l~~L 187 (226)
T TIGR03420 112 LFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARR-GLQL---PDEVADYL 187 (226)
T ss_pred HHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHc-CCCC---CHHHHHHH
Confidence 4333322 123457889887532 22222223568899999988888887643211 1111 13556777
Q ss_pred HHHcCCChHHHHHHHHHh
Q 038448 308 VKKCNGLPLVAKSLGGLL 325 (385)
Q Consensus 308 ~~~c~glPLAi~~~~~~L 325 (385)
++.+.|.|..+.-+...+
T Consensus 188 ~~~~~gn~r~L~~~l~~~ 205 (226)
T TIGR03420 188 LRHGSRDMGSLMALLDAL 205 (226)
T ss_pred HHhccCCHHHHHHHHHHH
Confidence 788888888777665444
No 11
>PF13173 AAA_14: AAA domain
Probab=98.37 E-value=9.2e-07 Score=71.28 Aligned_cols=115 Identities=19% Similarity=0.178 Sum_probs=74.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCCCCHHH----HHHHHHHHhhcCCCCCccchHHhhchhhH
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSEDFDIIR----VTKSILKSIASDQLVDDHDLNLLQKYNDW 235 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~----~~~~il~~l~~~~~~~~~~~~~l~~~~~w 235 (385)
-+++.|.|+.|+|||||+.+++.+.. .....++++......... +...+.+... . ....--+|++|....|
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~i~iDEiq~~~~~ 76 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLADPDLLEYFLELIK-P-GKKYIFIDEIQYLPDW 76 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhhhhhHHHHHHhhc-c-CCcEEEEehhhhhccH
Confidence 36899999999999999999987522 335567777665433221 1222222211 1 1133446777877888
Q ss_pred hhHhhhccCCCCCcEEEEEcCChhHHhhcC------CCCcccCCCCChhh
Q 038448 236 TNRSRLFEAGAPGSKIVFTTRNLGVAEKMG------PLPAYPLKELSNDD 279 (385)
Q Consensus 236 ~~l~~~l~~~~~gs~IivTTR~~~va~~~~------~~~~~~l~~L~~~~ 279 (385)
......+-+..+..+|++|+.+......-. ....+++.||+..|
T Consensus 77 ~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E 126 (128)
T PF13173_consen 77 EDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFRE 126 (128)
T ss_pred HHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHH
Confidence 887777766556789999999877664311 11357888888766
No 12
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.36 E-value=4.6e-06 Score=78.58 Aligned_cols=157 Identities=16% Similarity=0.076 Sum_probs=82.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCCCCHHHHHHHHHHHhhcCCCCCccchHHhhchhhHhhH
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSEDFDIIRVTKSILKSIASDQLVDDHDLNLLQKYNDWTNR 238 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~~~w~~l 238 (385)
....+.++|++|+||||||+.+.+.. ...+ .+++.+ .......+..++..+.....-..++.+.+.. ...+.+
T Consensus 50 ~~~~~ll~GppG~GKT~la~~ia~~l--~~~~---~~~~~~-~~~~~~~l~~~l~~l~~~~vl~IDEi~~l~~-~~~e~l 122 (328)
T PRK00080 50 ALDHVLLYGPPGLGKTTLANIIANEM--GVNI---RITSGP-ALEKPGDLAAILTNLEEGDVLFIDEIHRLSP-VVEEIL 122 (328)
T ss_pred CCCcEEEECCCCccHHHHHHHHHHHh--CCCe---EEEecc-cccChHHHHHHHHhcccCCEEEEecHhhcch-HHHHHH
Confidence 45678899999999999999998853 2222 112211 1222233444444443222111122222110 011111
Q ss_pred hhhc---------cC----------CCCCcEEEEEcCChhHHhhcC--CCCcccCCCCChhhHHhhhhccccCCCCCCCC
Q 038448 239 SRLF---------EA----------GAPGSKIVFTTRNLGVAEKMG--PLPAYPLKELSNDDCLSVFSPHSLGEKDFSTH 297 (385)
Q Consensus 239 ~~~l---------~~----------~~~gs~IivTTR~~~va~~~~--~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~ 297 (385)
...+ .. ..+.+-|..||+...+..... ....+.+.+++.++..+++.+.+.... ..
T Consensus 123 ~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~-~~-- 199 (328)
T PRK00080 123 YPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILG-VE-- 199 (328)
T ss_pred HHHHHhcceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcC-CC--
Confidence 1110 00 012344556776544433221 124578999999999999987763322 11
Q ss_pred ccHHHHHHHHHHHcCCChHHHHHHHHHhh
Q 038448 298 PSLKEIGEKIVKKCNGLPLVAKSLGGLLR 326 (385)
Q Consensus 298 ~~l~~~~~~i~~~c~glPLAi~~~~~~L~ 326 (385)
--.+....|++.|+|.|-.+..+...+.
T Consensus 200 -~~~~~~~~ia~~~~G~pR~a~~~l~~~~ 227 (328)
T PRK00080 200 -IDEEGALEIARRSRGTPRIANRLLRRVR 227 (328)
T ss_pred -cCHHHHHHHHHHcCCCchHHHHHHHHHH
Confidence 1235688999999999976655555444
No 13
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.33 E-value=4.3e-06 Score=77.96 Aligned_cols=175 Identities=16% Similarity=0.101 Sum_probs=87.8
Q ss_pred hhhHHHHHHHHhcCCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCCCCHHHHHHHHHHHhhcC
Q 038448 139 DKEKEETVKLLLRDDLRTDDGLSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSEDFDIIRVTKSILKSIASD 218 (385)
Q Consensus 139 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~ 218 (385)
+..++.+..++..... ....+..+.++|++|+|||+||+.+.+.. ...| ..+..+..... ..+...+..+...
T Consensus 10 ~~~~~~l~~~l~~~~~-~~~~~~~~ll~Gp~G~GKT~la~~ia~~~--~~~~---~~~~~~~~~~~-~~l~~~l~~~~~~ 82 (305)
T TIGR00635 10 EKVKEQLQLFIEAAKM-RQEALDHLLLYGPPGLGKTTLAHIIANEM--GVNL---KITSGPALEKP-GDLAAILTNLEEG 82 (305)
T ss_pred HHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCCHHHHHHHHHHHh--CCCE---EEeccchhcCc-hhHHHHHHhcccC
Confidence 3344445555532111 12345668899999999999999998852 2222 12221111111 2233333333322
Q ss_pred CCCCccchHHhhchhhHhhHhhhcc-------------------CCCCCcEEEEEcCChhHHhhcC--CCCcccCCCCCh
Q 038448 219 QLVDDHDLNLLQKYNDWTNRSRLFE-------------------AGAPGSKIVFTTRNLGVAEKMG--PLPAYPLKELSN 277 (385)
Q Consensus 219 ~~~~~~~~~~l~~~~~w~~l~~~l~-------------------~~~~gs~IivTTR~~~va~~~~--~~~~~~l~~L~~ 277 (385)
..-..++.+.+.. ...+.+...+. ...+.+-|..||+...+...+. ....+.+.+++.
T Consensus 83 ~vl~iDEi~~l~~-~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~ 161 (305)
T TIGR00635 83 DVLFIDEIHRLSP-AVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRDRFGIILRLEFYTV 161 (305)
T ss_pred CEEEEehHhhhCH-HHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHHHHhhcceEEEeCCCCH
Confidence 1101122221111 11111111110 0112344556777644433221 124578999999
Q ss_pred hhHHhhhhccccCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHHHHh
Q 038448 278 DDCLSVFSPHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVAKSLGGLL 325 (385)
Q Consensus 278 ~~a~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~c~glPLAi~~~~~~L 325 (385)
++..+++.+.+.... ... -.+....|++.|+|.|-.+..++..+
T Consensus 162 ~e~~~il~~~~~~~~-~~~---~~~al~~ia~~~~G~pR~~~~ll~~~ 205 (305)
T TIGR00635 162 EELAEIVSRSAGLLN-VEI---EPEAALEIARRSRGTPRIANRLLRRV 205 (305)
T ss_pred HHHHHHHHHHHHHhC-CCc---CHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 999999987763221 111 14567889999999997665555443
No 14
>PRK08727 hypothetical protein; Validated
Probab=98.24 E-value=7.4e-06 Score=73.19 Aligned_cols=149 Identities=12% Similarity=0.080 Sum_probs=86.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCCCCHHHHHHHHHHHhhcCCCCCccchHHhhchhhHhh-Hh
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSEDFDIIRVTKSILKSIASDQLVDDHDLNLLQKYNDWTN-RS 239 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~~~w~~-l~ 239 (385)
..+.|+|.+|+|||+|++.+++. .......+.|+++.+. ...+.+++..+.....-..++++.+.....|.. +.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~--~~~~~~~~~y~~~~~~---~~~~~~~~~~l~~~dlLiIDDi~~l~~~~~~~~~lf 116 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAA--AEQAGRSSAYLPLQAA---AGRLRDALEALEGRSLVALDGLESIAGQREDEVALF 116 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEeHHHh---hhhHHHHHHHHhcCCEEEEeCcccccCChHHHHHHH
Confidence 45999999999999999999875 3333345667775442 122333444443222212233333333334443 22
Q ss_pred hhccC-CCCCcEEEEEcCC---------hhHHhhcCCCCcccCCCCChhhHHhhhhccccCCCCCCCCccHHHHHHHHHH
Q 038448 240 RLFEA-GAPGSKIVFTTRN---------LGVAEKMGPLPAYPLKELSNDDCLSVFSPHSLGEKDFSTHPSLKEIGEKIVK 309 (385)
Q Consensus 240 ~~l~~-~~~gs~IivTTR~---------~~va~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~ 309 (385)
..+.. ..+|..||+||+. +.+...+.....+++.+++.++-..++.+++.... ... -.+...-|++
T Consensus 117 ~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~-l~l---~~e~~~~La~ 192 (233)
T PRK08727 117 DFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRG-LAL---DEAAIDWLLT 192 (233)
T ss_pred HHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcC-CCC---CHHHHHHHHH
Confidence 22221 1346679999984 22333333446789999999999999988664321 111 1456677888
Q ss_pred HcCCChHHH
Q 038448 310 KCNGLPLVA 318 (385)
Q Consensus 310 ~c~glPLAi 318 (385)
.+.|-.-.+
T Consensus 193 ~~~rd~r~~ 201 (233)
T PRK08727 193 HGERELAGL 201 (233)
T ss_pred hCCCCHHHH
Confidence 888665444
No 15
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.23 E-value=2.3e-05 Score=70.17 Aligned_cols=153 Identities=13% Similarity=0.166 Sum_probs=88.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCCCCHHHHHHHHHHHhhcCCCCCccchHHhhchhhHhh-H
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSEDFDIIRVTKSILKSIASDQLVDDHDLNLLQKYNDWTN-R 238 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~~~w~~-l 238 (385)
...+.|+|++|+|||+|++.+++. ....-..+.++++..... ...++.+.+.....-..++++.+.....|+. +
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~--~~~~~~~v~y~~~~~~~~---~~~~~~~~~~~~dlliiDdi~~~~~~~~~~~~l 119 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAE--LSQRGRAVGYVPLDKRAW---FVPEVLEGMEQLSLVCIDNIECIAGDELWEMAI 119 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEEHHHHhh---hhHHHHHHhhhCCEEEEeChhhhcCCHHHHHHH
Confidence 357899999999999999998875 222223456676654211 1122223222111112334444444556654 2
Q ss_pred hhhccC-CCCC-cEEEEEcCCh---------hHHhhcCCCCcccCCCCChhhHHhhhhccccCCCCCCCCccHHHHHHHH
Q 038448 239 SRLFEA-GAPG-SKIVFTTRNL---------GVAEKMGPLPAYPLKELSNDDCLSVFSPHSLGEKDFSTHPSLKEIGEKI 307 (385)
Q Consensus 239 ~~~l~~-~~~g-s~IivTTR~~---------~va~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~l~~~~~~i 307 (385)
...+.. ...| .++|+||+.. .+...+....++.+.++++++-..++.+++... .... -+++..-|
T Consensus 120 f~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~-~~~l---~~~v~~~L 195 (235)
T PRK08084 120 FDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLR-GFEL---PEDVGRFL 195 (235)
T ss_pred HHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHc-CCCC---CHHHHHHH
Confidence 223321 1233 3799999754 334445555789999999999888887755322 1111 24667778
Q ss_pred HHHcCCChHHHHHH
Q 038448 308 VKKCNGLPLVAKSL 321 (385)
Q Consensus 308 ~~~c~glPLAi~~~ 321 (385)
++.+.|..-++..+
T Consensus 196 ~~~~~~d~r~l~~~ 209 (235)
T PRK08084 196 LKRLDREMRTLFMT 209 (235)
T ss_pred HHhhcCCHHHHHHH
Confidence 88888765554443
No 16
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.22 E-value=6.6e-06 Score=73.13 Aligned_cols=68 Identities=22% Similarity=0.207 Sum_probs=37.1
Q ss_pred EEEEEcCChhHHhh--------cCCCCcccCCCCChhhHHhhhhccccCCCCCCCCccHHHHHHHHHHHcCCChHHHHH
Q 038448 250 KIVFTTRNLGVAEK--------MGPLPAYPLKELSNDDCLSVFSPHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVAKS 320 (385)
Q Consensus 250 ~IivTTR~~~va~~--------~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~c~glPLAi~~ 320 (385)
.+|+++....+... .+....+.+++|+.+++++++....-.. ... +.-.+..++|...+||.|..|..
T Consensus 158 ~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~--~~~-~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 158 SIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL--IKL-PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT-HHHHHH
T ss_pred eEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh--hcc-cCCHHHHHHHHHHhCCCHHHHhc
Confidence 45555555544443 1222458999999999999998753221 111 12245568999999999998764
No 17
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.11 E-value=1.5e-05 Score=74.19 Aligned_cols=153 Identities=22% Similarity=0.268 Sum_probs=83.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCCCCHHHHHHHHHHHhhcCCC---CCccchHHhhchhh
Q 038448 158 DGLSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSEDFDIIRVTKSILKSIASDQL---VDDHDLNLLQKYND 234 (385)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~---~~~~~~~~l~~~~~ 234 (385)
+.+.-..+||++|+||||||+.+... ....| ..+|-..+-.+-++.+++....... ...--++++...+.
T Consensus 46 ~~l~SmIl~GPPG~GKTTlA~liA~~--~~~~f-----~~~sAv~~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK 118 (436)
T COG2256 46 GHLHSMILWGPPGTGKTTLARLIAGT--TNAAF-----EALSAVTSGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNK 118 (436)
T ss_pred CCCceeEEECCCCCCHHHHHHHHHHh--hCCce-----EEeccccccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcCh
Confidence 46677889999999999999999874 44444 3344433333334444443311111 11222333331111
Q ss_pred HhhHhhhccCCCCCcEEEE--EcCChhHH---hhcCCCCcccCCCCChhhHHhhhhccccC-CCCCC-CCccH-HHHHHH
Q 038448 235 WTNRSRLFEAGAPGSKIVF--TTRNLGVA---EKMGPLPAYPLKELSNDDCLSVFSPHSLG-EKDFS-THPSL-KEIGEK 306 (385)
Q Consensus 235 w~~l~~~l~~~~~gs~Iiv--TTR~~~va---~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~-~~~~~-~~~~l-~~~~~~ 306 (385)
- +....+|...+|.-|+| ||.++... ...+...++.+++|+.++-..++.+-+.. ..... ....+ .+...-
T Consensus 119 ~-QQD~lLp~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~ 197 (436)
T COG2256 119 A-QQDALLPHVENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDY 197 (436)
T ss_pred h-hhhhhhhhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHH
Confidence 1 11224555577877766 66665432 11233478999999999999888872211 11110 01112 345566
Q ss_pred HHHHcCCChHHH
Q 038448 307 IVKKCNGLPLVA 318 (385)
Q Consensus 307 i~~~c~glPLAi 318 (385)
++..++|---+.
T Consensus 198 l~~~s~GD~R~a 209 (436)
T COG2256 198 LVRLSNGDARRA 209 (436)
T ss_pred HHHhcCchHHHH
Confidence 888888865433
No 18
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.10 E-value=5.8e-06 Score=74.19 Aligned_cols=55 Identities=16% Similarity=0.180 Sum_probs=46.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCC--CCHHHHHHHHHHHh
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSED--FDIIRVTKSILKSI 215 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~il~~l 215 (385)
-..++|+|++|+|||||++.+|++.... +|+.++|+.++.. +++.++++.+...+
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~ 72 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEV 72 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEE
Confidence 3678999999999999999999985433 8999999998776 78999999884433
No 19
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.07 E-value=0.00013 Score=69.81 Aligned_cols=58 Identities=12% Similarity=0.116 Sum_probs=41.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcccccc-ccc---cceEEEEecCCCCHHHHHHHHHHHhh
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSDVRVH-NHF---DLKAWTCVSEDFDIIRVTKSILKSIA 216 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-~~F---~~~~wv~vs~~~~~~~~~~~il~~l~ 216 (385)
....+.|+|++|+|||++++.++++..-. ... -..+|++.....+...++..|+.++.
T Consensus 39 ~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~ 100 (365)
T TIGR02928 39 RPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVELANQLR 100 (365)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34568999999999999999999752110 111 13467776666677788888888884
No 20
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.05 E-value=4.6e-06 Score=78.45 Aligned_cols=51 Identities=16% Similarity=0.225 Sum_probs=43.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCCC--CHHHHHHHHH
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSEDF--DIIRVTKSIL 212 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~~~~~il 212 (385)
....|+|++|+||||||+.+|++.... +|+.++||.+++.. ++.++++.|.
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIl 222 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVK 222 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhc
Confidence 457899999999999999999985443 89999999999887 6777777776
No 21
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.03 E-value=0.00017 Score=67.56 Aligned_cols=164 Identities=15% Similarity=0.178 Sum_probs=99.6
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEcCCCCcHHHHHHHHhccc----cccccccceEEEE-ecCCCCHHHHHHHHHHHhh
Q 038448 142 KEETVKLLLRDDLRTDDGLSVIPIIGTGRIGKTTLAQLAYSDV----RVHNHFDLKAWTC-VSEDFDIIRVTKSILKSIA 216 (385)
Q Consensus 142 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~----~~~~~F~~~~wv~-vs~~~~~~~~~~~il~~l~ 216 (385)
++.+.+++..+ .-...+.++|+.|+||||+|+.++... ....|+|...|.. -+....... .+++...+.
T Consensus 13 ~~~l~~~~~~~-----~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~~~~~~ 86 (313)
T PRK05564 13 KNRIKNSIIKN-----RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNIIEEVN 86 (313)
T ss_pred HHHHHHHHHcC-----CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHHHHHHh
Confidence 45556666332 234678899999999999998887631 1234566656655 233444444 445555554
Q ss_pred cCCCCCc---cchH--HhhchhhHhhHhhhccCCCCCcEEEEEcCChhHH-hhc-CCCCcccCCCCChhhHHhhhhcccc
Q 038448 217 SDQLVDD---HDLN--LLQKYNDWTNRSRLFEAGAPGSKIVFTTRNLGVA-EKM-GPLPAYPLKELSNDDCLSVFSPHSL 289 (385)
Q Consensus 217 ~~~~~~~---~~~~--~l~~~~~w~~l~~~l~~~~~gs~IivTTR~~~va-~~~-~~~~~~~l~~L~~~~a~~Lf~~~a~ 289 (385)
....... --++ +.-+...|+.+...+.....++.+|++|.+.+.. ..+ +....+.+.+++.++....+.+..
T Consensus 87 ~~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~l~~~~- 165 (313)
T PRK05564 87 KKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEIEKFISYKY- 165 (313)
T ss_pred cCcccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcCHHHHHHHHHHHh-
Confidence 3322110 0011 1115667888998888777889998888765422 211 122678899999999877665442
Q ss_pred CCCCCCCCccHHHHHHHHHHHcCCChHHHH
Q 038448 290 GEKDFSTHPSLKEIGEKIVKKCNGLPLVAK 319 (385)
Q Consensus 290 ~~~~~~~~~~l~~~~~~i~~~c~glPLAi~ 319 (385)
... -.+.+..++..++|.|.-+.
T Consensus 166 ~~~-------~~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 166 NDI-------KEEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred cCC-------CHHHHHHHHHHcCCCHHHHH
Confidence 110 12346678899999886543
No 22
>PRK05642 DNA replication initiation factor; Validated
Probab=98.02 E-value=3.4e-05 Score=68.96 Aligned_cols=152 Identities=17% Similarity=0.260 Sum_probs=86.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCCCCHHHHHHHHHHHhhcCCCCCccchHHhhchhhHhh-H
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSEDFDIIRVTKSILKSIASDQLVDDHDLNLLQKYNDWTN-R 238 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~~~w~~-l 238 (385)
...+.|+|.+|+|||.|++.+++. ....-..++|++..+-.. ....+.+.+...+.-..++++.+.....|+. +
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~--~~~~~~~v~y~~~~~~~~---~~~~~~~~~~~~d~LiiDDi~~~~~~~~~~~~L 119 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLR--FEQRGEPAVYLPLAELLD---RGPELLDNLEQYELVCLDDLDVIAGKADWEEAL 119 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCcEEEeeHHHHHh---hhHHHHHhhhhCCEEEEechhhhcCChHHHHHH
Confidence 367899999999999999999874 222223567777543111 1123333332222112344444444455654 4
Q ss_pred hhhccC-CCCCcEEEEEcCChhH---------HhhcCCCCcccCCCCChhhHHhhhhccccCCCCCCCCccHHHHHHHHH
Q 038448 239 SRLFEA-GAPGSKIVFTTRNLGV---------AEKMGPLPAYPLKELSNDDCLSVFSPHSLGEKDFSTHPSLKEIGEKIV 308 (385)
Q Consensus 239 ~~~l~~-~~~gs~IivTTR~~~v---------a~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~l~~~~~~i~ 308 (385)
...+.. ...|..+|+||+...- ...+....++.+++++.++-..++..++.... ...+ .++..-|+
T Consensus 120 f~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~-~~l~---~ev~~~L~ 195 (234)
T PRK05642 120 FHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRG-LHLT---DEVGHFIL 195 (234)
T ss_pred HHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcC-CCCC---HHHHHHHH
Confidence 443332 2346678998874322 22223345688999999999888886553321 1112 46667778
Q ss_pred HHcCCChHHHHH
Q 038448 309 KKCNGLPLVAKS 320 (385)
Q Consensus 309 ~~c~glPLAi~~ 320 (385)
+.+.|..-.+..
T Consensus 196 ~~~~~d~r~l~~ 207 (234)
T PRK05642 196 TRGTRSMSALFD 207 (234)
T ss_pred HhcCCCHHHHHH
Confidence 877776544443
No 23
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.97 E-value=9.8e-05 Score=71.84 Aligned_cols=155 Identities=17% Similarity=0.131 Sum_probs=81.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCCCCHHHHHHHHHHHhhcCC---CCCccchHHhh--chh
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSEDFDIIRVTKSILKSIASDQ---LVDDHDLNLLQ--KYN 233 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~---~~~~~~~~~l~--~~~ 233 (385)
....+.++|++|+||||||+.+++. ....| +.++.......-++.++....... ....--+++++ ...
T Consensus 35 ~~~~ilL~GppGtGKTtLA~~ia~~--~~~~~-----~~l~a~~~~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~ 107 (413)
T PRK13342 35 RLSSMILWGPPGTGKTTLARIIAGA--TDAPF-----EALSAVTSGVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKA 107 (413)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH--hCCCE-----EEEecccccHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHH
Confidence 3457888999999999999999885 33233 333322222223334444332111 00111122222 222
Q ss_pred hHhhHhhhccCCCCCcEEEE--EcCChhHH--h-hcCCCCcccCCCCChhhHHhhhhccccCCCCCCCCccHHHHHHHHH
Q 038448 234 DWTNRSRLFEAGAPGSKIVF--TTRNLGVA--E-KMGPLPAYPLKELSNDDCLSVFSPHSLGEKDFSTHPSLKEIGEKIV 308 (385)
Q Consensus 234 ~w~~l~~~l~~~~~gs~Iiv--TTR~~~va--~-~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~l~~~~~~i~ 308 (385)
..+.+...+. .|+.+++ ||.+.... . ..+....+.+.+++.++.+.++.+.+....... ..-..+....|+
T Consensus 108 ~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~-i~i~~~al~~l~ 183 (413)
T PRK13342 108 QQDALLPHVE---DGTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLLKRALEDKERGL-VELDDEALDALA 183 (413)
T ss_pred HHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHHHHHHHHHhhcCC-CCCCHHHHHHHH
Confidence 3344444443 3554544 34433211 1 112225789999999999999887542211000 011245677899
Q ss_pred HHcCCChHHHHHHHHH
Q 038448 309 KKCNGLPLVAKSLGGL 324 (385)
Q Consensus 309 ~~c~glPLAi~~~~~~ 324 (385)
+.|+|.|..+..+...
T Consensus 184 ~~s~Gd~R~aln~Le~ 199 (413)
T PRK13342 184 RLANGDARRALNLLEL 199 (413)
T ss_pred HhCCCCHHHHHHHHHH
Confidence 9999998766554433
No 24
>PRK09087 hypothetical protein; Validated
Probab=97.95 E-value=6.7e-05 Score=66.59 Aligned_cols=145 Identities=12% Similarity=0.081 Sum_probs=83.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCCCCHHHHHHHHHHHhhcCCCCCccchHHhh-chhhHhhHh
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSEDFDIIRVTKSILKSIASDQLVDDHDLNLLQ-KYNDWTNRS 239 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~-~~~~w~~l~ 239 (385)
+.+.|+|.+|+|||+|++..+... ...+++.. .+...++..+..... ..++++.+. ....+-.+.
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~-------~~~~i~~~------~~~~~~~~~~~~~~l-~iDDi~~~~~~~~~lf~l~ 110 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKS-------DALLIHPN------EIGSDAANAAAEGPV-LIEDIDAGGFDETGLFHLI 110 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhc-------CCEEecHH------HcchHHHHhhhcCeE-EEECCCCCCCCHHHHHHHH
Confidence 668999999999999999988752 12245432 222222222211100 112221111 222233333
Q ss_pred hhccCCCCCcEEEEEcCC---------hhHHhhcCCCCcccCCCCChhhHHhhhhccccCCCCCCCCccHHHHHHHHHHH
Q 038448 240 RLFEAGAPGSKIVFTTRN---------LGVAEKMGPLPAYPLKELSNDDCLSVFSPHSLGEKDFSTHPSLKEIGEKIVKK 310 (385)
Q Consensus 240 ~~l~~~~~gs~IivTTR~---------~~va~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~ 310 (385)
..+. ..|..||+|++. +.+...+.....+++++++.++-..++.+.+-. .....+ +++..-|++.
T Consensus 111 n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~-~~~~l~---~ev~~~La~~ 184 (226)
T PRK09087 111 NSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFAD-RQLYVD---PHVVYYLVSR 184 (226)
T ss_pred HHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHH-cCCCCC---HHHHHHHHHH
Confidence 3333 336679998873 344445556678999999999999999877632 122222 4667778888
Q ss_pred cCCChHHHHHHHHHh
Q 038448 311 CNGLPLVAKSLGGLL 325 (385)
Q Consensus 311 c~glPLAi~~~~~~L 325 (385)
+.|.+-++..+-..|
T Consensus 185 ~~r~~~~l~~~l~~L 199 (226)
T PRK09087 185 MERSLFAAQTIVDRL 199 (226)
T ss_pred hhhhHHHHHHHHHHH
Confidence 888776665544333
No 25
>PRK08118 topology modulation protein; Reviewed
Probab=97.73 E-value=1.6e-05 Score=67.08 Aligned_cols=35 Identities=34% Similarity=0.579 Sum_probs=28.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcccccc-ccccceEE
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVH-NHFDLKAW 195 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~-~~F~~~~w 195 (385)
+.|.|+|++|+||||||+.+++...+. -+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 358999999999999999999875443 45777775
No 26
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.72 E-value=0.00069 Score=64.73 Aligned_cols=155 Identities=14% Similarity=0.103 Sum_probs=85.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccc-------------------cccceEEEEecCCCCHHHHHHHHHHHhhcCCC
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSDVRVHN-------------------HFDLKAWTCVSEDFDIIRVTKSILKSIASDQL 220 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-------------------~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~ 220 (385)
...+.++|++|+||||+|+.+.+...... .+....++..+..... +-+++++..+.....
T Consensus 38 ~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~~~~~~~~v-~~ir~i~~~~~~~p~ 116 (363)
T PRK14961 38 HHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEIDAASRTKV-EEMREILDNIYYSPS 116 (363)
T ss_pred CeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEecccccCCH-HHHHHHHHHHhcCcc
Confidence 45678999999999999998876421100 1112233333222233 334556555432211
Q ss_pred C---CccchHHhh--chhhHhhHhhhccCCCCCcEEEEEcCCh-hHHhhcC-CCCcccCCCCChhhHHhhhhccccCCCC
Q 038448 221 V---DDHDLNLLQ--KYNDWTNRSRLFEAGAPGSKIVFTTRNL-GVAEKMG-PLPAYPLKELSNDDCLSVFSPHSLGEKD 293 (385)
Q Consensus 221 ~---~~~~~~~l~--~~~~w~~l~~~l~~~~~gs~IivTTR~~-~va~~~~-~~~~~~l~~L~~~~a~~Lf~~~a~~~~~ 293 (385)
. ..--+++.+ ....++.+...+.......++|++|.+. .+...+. ....+++.+++.++....+...+-...
T Consensus 117 ~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g- 195 (363)
T PRK14961 117 KSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKES- 195 (363)
T ss_pred cCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcC-
Confidence 0 011122222 3345666766666555566777766543 3333222 225789999999998877766542211
Q ss_pred CCCCccHHHHHHHHHHHcCCChHHHH
Q 038448 294 FSTHPSLKEIGEKIVKKCNGLPLVAK 319 (385)
Q Consensus 294 ~~~~~~l~~~~~~i~~~c~glPLAi~ 319 (385)
.. --.+.+..|+..++|.|-.+.
T Consensus 196 ~~---i~~~al~~ia~~s~G~~R~al 218 (363)
T PRK14961 196 ID---TDEYALKLIAYHAHGSMRDAL 218 (363)
T ss_pred CC---CCHHHHHHHHHHcCCCHHHHH
Confidence 11 113556778999999885433
No 27
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.70 E-value=0.00017 Score=63.81 Aligned_cols=150 Identities=11% Similarity=0.143 Sum_probs=82.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcccccccccc--ceEEEEecCCCCHHHHHHHHHHHhhc------------CCCCCcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFD--LKAWTCVSEDFDIIRVTKSILKSIAS------------DQLVDDH 224 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~~~~~il~~l~~------------~~~~~~~ 224 (385)
....+-|+|..|+|||.|.+.+++. +....+ .+++++. .++...+...+.. .+.-..+
T Consensus 33 ~~~~l~l~G~~G~GKTHLL~Ai~~~--~~~~~~~~~v~y~~~------~~f~~~~~~~~~~~~~~~~~~~~~~~DlL~iD 104 (219)
T PF00308_consen 33 RYNPLFLYGPSGLGKTHLLQAIANE--AQKQHPGKRVVYLSA------EEFIREFADALRDGEIEEFKDRLRSADLLIID 104 (219)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHHHH--HHHHCTTS-EEEEEH------HHHHHHHHHHHHTTSHHHHHHHHCTSSEEEEE
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH--HHhccccccceeecH------HHHHHHHHHHHHcccchhhhhhhhcCCEEEEe
Confidence 3456789999999999999999986 333222 3556643 3344433333322 1111234
Q ss_pred chHHhhchhhHhh-HhhhccC-CCCCcEEEEEcCCh---------hHHhhcCCCCcccCCCCChhhHHhhhhccccCCCC
Q 038448 225 DLNLLQKYNDWTN-RSRLFEA-GAPGSKIVFTTRNL---------GVAEKMGPLPAYPLKELSNDDCLSVFSPHSLGEKD 293 (385)
Q Consensus 225 ~~~~l~~~~~w~~-l~~~l~~-~~~gs~IivTTR~~---------~va~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~ 293 (385)
+++.+.....|.. +...+.. ...|.+||+|+... .+...+...-.+++.+++.++...++.+.+-...
T Consensus 105 Di~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~- 183 (219)
T PF00308_consen 105 DIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERG- 183 (219)
T ss_dssp TGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT-
T ss_pred cchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhC-
Confidence 4455545555554 2222221 13466899999642 2333344456788999999999998888763222
Q ss_pred CCCCccHHHHHHHHHHHcCCChHHHHH
Q 038448 294 FSTHPSLKEIGEKIVKKCNGLPLVAKS 320 (385)
Q Consensus 294 ~~~~~~l~~~~~~i~~~c~glPLAi~~ 320 (385)
.. --.+++.-|++.+.+..-.+..
T Consensus 184 ~~---l~~~v~~~l~~~~~~~~r~L~~ 207 (219)
T PF00308_consen 184 IE---LPEEVIEYLARRFRRDVRELEG 207 (219)
T ss_dssp -----S-HHHHHHHHHHTTSSHHHHHH
T ss_pred CC---CcHHHHHHHHHhhcCCHHHHHH
Confidence 11 1245667777777766554443
No 28
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.70 E-value=0.00061 Score=59.42 Aligned_cols=155 Identities=20% Similarity=0.198 Sum_probs=77.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCCCCHHHHHHHHHHHhhcCCCC---CccchHHhhchhh
Q 038448 158 DGLSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSEDFDIIRVTKSILKSIASDQLV---DDHDLNLLQKYND 234 (385)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~---~~~~~~~l~~~~~ 234 (385)
+.+.-+.+||++|+||||||..+.+. ....|. +++... ..-..-+..++..+.....- +.+.++..+
T Consensus 48 ~~l~h~lf~GPPG~GKTTLA~IIA~e--~~~~~~---~~sg~~-i~k~~dl~~il~~l~~~~ILFIDEIHRlnk~~---- 117 (233)
T PF05496_consen 48 EALDHMLFYGPPGLGKTTLARIIANE--LGVNFK---ITSGPA-IEKAGDLAAILTNLKEGDILFIDEIHRLNKAQ---- 117 (233)
T ss_dssp S---EEEEESSTTSSHHHHHHHHHHH--CT--EE---EEECCC---SCHHHHHHHHT--TT-EEEECTCCC--HHH----
T ss_pred CCcceEEEECCCccchhHHHHHHHhc--cCCCeE---eccchh-hhhHHHHHHHHHhcCCCcEEEEechhhccHHH----
Confidence 45678899999999999999999986 444452 333211 11112233445554332210 122222111
Q ss_pred HhhHhhhcc--------CCCC-----------CcEEEEEcCChhHHhhcCCCC--cccCCCCChhhHHhhhhccccCCCC
Q 038448 235 WTNRSRLFE--------AGAP-----------GSKIVFTTRNLGVAEKMGPLP--AYPLKELSNDDCLSVFSPHSLGEKD 293 (385)
Q Consensus 235 w~~l~~~l~--------~~~~-----------gs~IivTTR~~~va~~~~~~~--~~~l~~L~~~~a~~Lf~~~a~~~~~ 293 (385)
-+.+..+.- ..++ =+-|=.|||...+........ ..+++..+.+|-..+..+.+.--.
T Consensus 118 qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~- 196 (233)
T PF05496_consen 118 QEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILN- 196 (233)
T ss_dssp HHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-
T ss_pred HHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhC-
Confidence 111111111 1111 123456888766655544432 347999999999998887652211
Q ss_pred CCCCccHHHHHHHHHHHcCCChHHHHHHHHHhh
Q 038448 294 FSTHPSLKEIGEKIVKKCNGLPLVAKSLGGLLR 326 (385)
Q Consensus 294 ~~~~~~l~~~~~~i~~~c~glPLAi~~~~~~L~ 326 (385)
-+--.+.+.+|+++|.|-|--..-+-...+
T Consensus 197 ---i~i~~~~~~~Ia~rsrGtPRiAnrll~rvr 226 (233)
T PF05496_consen 197 ---IEIDEDAAEEIARRSRGTPRIANRLLRRVR 226 (233)
T ss_dssp ----EE-HHHHHHHHHCTTTSHHHHHHHHHHHC
T ss_pred ---CCcCHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 122357889999999999966555444433
No 29
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.69 E-value=0.00058 Score=64.51 Aligned_cols=156 Identities=16% Similarity=0.096 Sum_probs=79.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcccccccccc-ceEEEEecCCC-----------C--------------HHHHHHHHHH
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFD-LKAWTCVSEDF-----------D--------------IIRVTKSILK 213 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~vs~~~-----------~--------------~~~~~~~il~ 213 (385)
.+.+.++|++|+||||+|+.+.+... ...+. ..+.++++.-. + ....++.++.
T Consensus 36 ~~~lll~Gp~GtGKT~la~~~~~~l~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (337)
T PRK12402 36 LPHLLVQGPPGSGKTAAVRALARELY-GDPWENNFTEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLK 114 (337)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhc-CcccccceEEechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHH
Confidence 34578999999999999999876421 11111 12344433210 0 1223333333
Q ss_pred HhhcCCC----CCccchHHhh--chhhHhhHhhhccCCCCCcEEEEEcCChh-HHhhcC-CCCcccCCCCChhhHHhhhh
Q 038448 214 SIASDQL----VDDHDLNLLQ--KYNDWTNRSRLFEAGAPGSKIVFTTRNLG-VAEKMG-PLPAYPLKELSNDDCLSVFS 285 (385)
Q Consensus 214 ~l~~~~~----~~~~~~~~l~--~~~~w~~l~~~l~~~~~gs~IivTTR~~~-va~~~~-~~~~~~l~~L~~~~a~~Lf~ 285 (385)
......+ ...--+++.+ ....+..+...+......+++|+||.... +...+. ....+.+.+++.++...++.
T Consensus 115 ~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~ 194 (337)
T PRK12402 115 EYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLE 194 (337)
T ss_pred HHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchhhcCCceEEEecCCCHHHHHHHHH
Confidence 3221111 0011111111 12223345544443345567887775432 222222 22457888999988888777
Q ss_pred ccccCCCCCCCCccHHHHHHHHHHHcCCChHHHHH
Q 038448 286 PHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVAKS 320 (385)
Q Consensus 286 ~~a~~~~~~~~~~~l~~~~~~i~~~c~glPLAi~~ 320 (385)
..+-... ... -.+....+++.++|.+-.+..
T Consensus 195 ~~~~~~~-~~~---~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 195 SIAEAEG-VDY---DDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred HHHHHcC-CCC---CHHHHHHHHHHcCCCHHHHHH
Confidence 6542211 111 145677788889887655443
No 30
>COG3903 Predicted ATPase [General function prediction only]
Probab=97.68 E-value=0.00011 Score=68.89 Aligned_cols=163 Identities=17% Similarity=0.159 Sum_probs=96.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEE-ecCCCCHHHHHHHHHHHhhcCCCCCccchHHhh------
Q 038448 158 DGLSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTC-VSEDFDIIRVTKSILKSIASDQLVDDHDLNLLQ------ 230 (385)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~-vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~------ 230 (385)
...+.+.++|.|||||||++-++.+ +..-|..-.|+. ...-.+...+.-.....++..........+.+.
T Consensus 12 ~~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g~~~~~~~~~~~~~r 88 (414)
T COG3903 12 TALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQPGDSAVDTLVRRIGDR 88 (414)
T ss_pred hhhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhcccccccchHHHHHHHHHHhhh
Confidence 3568999999999999999999987 566676555444 333334444444434434433321111111111
Q ss_pred -------chhh----HhhHhhhccCCCCCcEEEEEcCChhHHhhcCCCCcccCCCCChh-hHHhhhhccccCCCC-CCCC
Q 038448 231 -------KYND----WTNRSRLFEAGAPGSKIVFTTRNLGVAEKMGPLPAYPLKELSND-DCLSVFSPHSLGEKD-FSTH 297 (385)
Q Consensus 231 -------~~~~----w~~l~~~l~~~~~gs~IivTTR~~~va~~~~~~~~~~l~~L~~~-~a~~Lf~~~a~~~~~-~~~~ 297 (385)
+... -..+...+..+.+.-.|+.|+|..... .+...+.+.+|+.. ++.++|...+..... ....
T Consensus 89 r~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l~ 165 (414)
T COG3903 89 RALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWLT 165 (414)
T ss_pred hHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHHHHhccceeec
Confidence 1111 111222333444555688888864433 33456777777765 678888766532211 1112
Q ss_pred ccHHHHHHHHHHHcCCChHHHHHHHHHhh
Q 038448 298 PSLKEIGEKIVKKCNGLPLVAKSLGGLLR 326 (385)
Q Consensus 298 ~~l~~~~~~i~~~c~glPLAi~~~~~~L~ 326 (385)
........+|+++..|.||+|...++..+
T Consensus 166 ~~~~a~v~~icr~ldg~~laielaaarv~ 194 (414)
T COG3903 166 DDNAAAVAEICRRLDGIPLAIELAAARVR 194 (414)
T ss_pred CCchHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 33356788999999999999999998887
No 31
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.61 E-value=0.00048 Score=55.90 Aligned_cols=42 Identities=19% Similarity=0.095 Sum_probs=29.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCCC
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSEDF 202 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~ 202 (385)
..+.+.|+|.+|+|||+|++.+++... ..-..++++..+...
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~ 59 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLL 59 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhh
Confidence 346888999999999999999998632 222345666655543
No 32
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.60 E-value=0.0003 Score=64.89 Aligned_cols=153 Identities=16% Similarity=0.222 Sum_probs=86.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCCCCHHHHHHHHHHHhhcCCC----CCccchHHhhchh
Q 038448 158 DGLSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSEDFDIIRVTKSILKSIASDQL----VDDHDLNLLQKYN 233 (385)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~----~~~~~~~~l~~~~ 233 (385)
+.+.-+.+||++|+||||||+.+.+..+... ..||..|-...-..-.++|+++...... ...--++++...+
T Consensus 160 ~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFN 235 (554)
T KOG2028|consen 160 NRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFN 235 (554)
T ss_pred CCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhh
Confidence 4667888999999999999999998643322 4577777654444445555554432111 0111223322111
Q ss_pred hHhhHhhhccCCCCCcEEEE--EcCChhHH---hhcCCCCcccCCCCChhhHHhhhhccc--cCC-CC-CCCCcc-----
Q 038448 234 DWTNRSRLFEAGAPGSKIVF--TTRNLGVA---EKMGPLPAYPLKELSNDDCLSVFSPHS--LGE-KD-FSTHPS----- 299 (385)
Q Consensus 234 ~w~~l~~~l~~~~~gs~Iiv--TTR~~~va---~~~~~~~~~~l~~L~~~~a~~Lf~~~a--~~~-~~-~~~~~~----- 299 (385)
.- +...++|.-.+|+-++| ||.++... ..+..-.++-|++|..++-..++.+-. .+. .. ...-++
T Consensus 236 ks-QQD~fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~v 314 (554)
T KOG2028|consen 236 KS-QQDTFLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFV 314 (554)
T ss_pred hh-hhhcccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhh
Confidence 11 12235666677876665 77766442 222333678899999999888877622 111 11 111111
Q ss_pred HHHHHHHHHHHcCCCh
Q 038448 300 LKEIGEKIVKKCNGLP 315 (385)
Q Consensus 300 l~~~~~~i~~~c~glP 315 (385)
...+.+-++..|.|-.
T Consensus 315 e~siidyla~lsdGDa 330 (554)
T KOG2028|consen 315 EDSIIDYLAYLSDGDA 330 (554)
T ss_pred hHHHHHHHHHhcCchH
Confidence 2245566777787764
No 33
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.60 E-value=0.00021 Score=67.76 Aligned_cols=57 Identities=16% Similarity=0.239 Sum_probs=46.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCC--CCHHHHHHHHHHHhhcC
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSED--FDIIRVTKSILKSIASD 218 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~il~~l~~~ 218 (385)
..++|+|++|.|||||++.+++... .++|+..+||.+.+. .++.++++.|+..+-..
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~-~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvas 227 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAIT-RNHPEVELIVLLIDERPEEVTDMQRSVKGEVVAS 227 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhc-ccCCceEEEEEEcCCCCccHHHHHHHhhceEEEe
Confidence 4588999999999999999999743 337999999999865 78889999886544333
No 34
>CHL00181 cbbX CbbX; Provisional
Probab=97.57 E-value=0.0014 Score=60.47 Aligned_cols=126 Identities=14% Similarity=0.080 Sum_probs=61.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCCCCHH--------HHHHHHHHHhhcCCCCCccchHHhh--
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSEDFDII--------RVTKSILKSIASDQLVDDHDLNLLQ-- 230 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~--------~~~~~il~~l~~~~~~~~~~~~~l~-- 230 (385)
..+.++|.+|+||||+|+.++........-...-|+.++.. ++. .-...+++...+.-. ..++.+.+-
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~-~l~~~~~g~~~~~~~~~l~~a~ggVL-fIDE~~~l~~~ 137 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRD-DLVGQYIGHTAPKTKEVLKKAMGGVL-FIDEAYYLYKP 137 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHH-HHHHHHhccchHHHHHHHHHccCCEE-EEEccchhccC
Confidence 34788999999999999999763111111111124444321 110 011233333221100 112222220
Q ss_pred ------chhhHhhHhhhccCCCCCcEEEEEcCChhHHhhcC--------CCCcccCCCCChhhHHhhhhccc
Q 038448 231 ------KYNDWTNRSRLFEAGAPGSKIVFTTRNLGVAEKMG--------PLPAYPLKELSNDDCLSVFSPHS 288 (385)
Q Consensus 231 ------~~~~w~~l~~~l~~~~~gs~IivTTR~~~va~~~~--------~~~~~~l~~L~~~~a~~Lf~~~a 288 (385)
..+.-..+...+.....+.+||+++....+..... ....+.+.+++.++..+++...+
T Consensus 138 ~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l 209 (287)
T CHL00181 138 DNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIML 209 (287)
T ss_pred CCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHH
Confidence 11222334444444445567777776544332111 12357788888888877776654
No 35
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.57 E-value=0.0098 Score=60.76 Aligned_cols=119 Identities=13% Similarity=0.113 Sum_probs=62.0
Q ss_pred hHhhHhhhccCCCCCcEEEE--EcCChhH-HhhcC-CCCcccCCCCChhhHHhhhhccccCCCCCCCCccHHHHHHHHHH
Q 038448 234 DWTNRSRLFEAGAPGSKIVF--TTRNLGV-AEKMG-PLPAYPLKELSNDDCLSVFSPHSLGEKDFSTHPSLKEIGEKIVK 309 (385)
Q Consensus 234 ~w~~l~~~l~~~~~gs~Iiv--TTR~~~v-a~~~~-~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~ 309 (385)
.|..+...+....+..-|++ ||++... ...+. ....+.+.+++.++.+.++.+.+-.. ..... .+....|.+
T Consensus 308 ~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~-~v~ls---~eal~~L~~ 383 (615)
T TIGR02903 308 VPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKI-NVHLA---AGVEELIAR 383 (615)
T ss_pred cchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHc-CCCCC---HHHHHHHHH
Confidence 35566655555455544555 5664432 11111 11356789999999999998865321 11111 344555666
Q ss_pred HcCCChHHHHHHHHHhhccc--CCC--CccCcHHHHHHHHHHHHHhccccce
Q 038448 310 KCNGLPLVAKSLGGLLRGFL--NHE--SDKKQMENLGRKYFQELYSRLFFQL 357 (385)
Q Consensus 310 ~c~glPLAi~~~~~~L~g~~--~~~--~~~~~~e~~~~~~~~~Lv~rsll~~ 357 (385)
.+..-+-|+..++.+. ++. ... ........+....+.+.+..+=+.|
T Consensus 384 ys~~gRraln~L~~~~-~~~~~~~~~~~~~~~~~~I~~edv~~~l~~~r~~~ 434 (615)
T TIGR02903 384 YTIEGRKAVNILADVY-GYALYRAAEAGKENDKVTITQDDVYEVIQISRLSP 434 (615)
T ss_pred CCCcHHHHHHHHHHHH-HHHHHHHHHhccCCCCeeECHHHHHHHhCCCcCcc
Confidence 6665578887776653 221 000 0000111234455677777665543
No 36
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.57 E-value=0.0011 Score=66.63 Aligned_cols=173 Identities=12% Similarity=0.070 Sum_probs=92.9
Q ss_pred hhhHHHHHHHHhcCCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccc------------------------cccccceE
Q 038448 139 DKEKEETVKLLLRDDLRTDDGLSVIPIIGTGRIGKTTLAQLAYSDVRV------------------------HNHFDLKA 194 (385)
Q Consensus 139 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------------------------~~~F~~~~ 194 (385)
+.-++.|.+++..+. -...+.++|..|+||||+|+.+.+...- ...|...+
T Consensus 22 e~vv~~L~~al~~gR-----LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hpDvi 96 (700)
T PRK12323 22 EHVVRALTHALEQQR-----LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFVDYI 96 (700)
T ss_pred HHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCCcce
Confidence 333455566664432 2356789999999999999887653211 01122234
Q ss_pred EEEecCCCCHHHHHHHHHHHhhcCCCC---CccchHHhh--chhhHhhHhhhccCCCCCcEEEE-EcCChhHHhhcCC-C
Q 038448 195 WTCVSEDFDIIRVTKSILKSIASDQLV---DDHDLNLLQ--KYNDWTNRSRLFEAGAPGSKIVF-TTRNLGVAEKMGP-L 267 (385)
Q Consensus 195 wv~vs~~~~~~~~~~~il~~l~~~~~~---~~~~~~~l~--~~~~w~~l~~~l~~~~~gs~Iiv-TTR~~~va~~~~~-~ 267 (385)
++..+....+.+ +++|++.+...... ..-.+++.. +...++.+...+..-..+..+|+ ||....+...+.+ .
T Consensus 97 EIdAas~~gVDd-IReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSRC 175 (700)
T PRK12323 97 EMDAASNRGVDE-MAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRC 175 (700)
T ss_pred EecccccCCHHH-HHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHHH
Confidence 454443333333 34455544322110 111122222 44556667766655445566555 5544455433322 2
Q ss_pred CcccCCCCChhhHHhhhhccccCCCCCCCCccHHHHHHHHHHHcCCChHHHHHH
Q 038448 268 PAYPLKELSNDDCLSVFSPHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVAKSL 321 (385)
Q Consensus 268 ~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~c~glPLAi~~~ 321 (385)
..+.+..++.++..+.+.+.+-. .... .-.+....|++.++|.|.-...+
T Consensus 176 q~f~f~~ls~eei~~~L~~Il~~-Egi~---~d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 176 LQFNLKQMPPGHIVSHLDAILGE-EGIA---HEVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred HhcccCCCChHHHHHHHHHHHHH-cCCC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 57899999999988877755421 1111 11345577899999988644433
No 37
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.57 E-value=0.0014 Score=66.87 Aligned_cols=173 Identities=10% Similarity=0.058 Sum_probs=95.9
Q ss_pred hhhHHHHHHHHhcCCCCCCCCceEEEEEcCCCCcHHHHHHHHhcccccc-------------------ccccceEEEEec
Q 038448 139 DKEKEETVKLLLRDDLRTDDGLSVIPIIGTGRIGKTTLAQLAYSDVRVH-------------------NHFDLKAWTCVS 199 (385)
Q Consensus 139 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-------------------~~F~~~~wv~vs 199 (385)
+.-++.|.+++..+. -...+.++|..|+||||+|+.+.+...-. ..|...+++..+
T Consensus 22 e~Vv~~L~~aL~~gR-----L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEIDAa 96 (830)
T PRK07003 22 EHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDAA 96 (830)
T ss_pred HHHHHHHHHHHhcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEeccc
Confidence 334455566664322 24566799999999999998776532111 122234555544
Q ss_pred CCCCHHHHHHHHHHHhhcCCCC---CccchHHhh--chhhHhhHhhhccCCCCCcEEEEEcCCh-hHHhhcC-CCCcccC
Q 038448 200 EDFDIIRVTKSILKSIASDQLV---DDHDLNLLQ--KYNDWTNRSRLFEAGAPGSKIVFTTRNL-GVAEKMG-PLPAYPL 272 (385)
Q Consensus 200 ~~~~~~~~~~~il~~l~~~~~~---~~~~~~~l~--~~~~w~~l~~~l~~~~~gs~IivTTR~~-~va~~~~-~~~~~~l 272 (385)
....+.+ ++++++........ ....+++.. ....|+.+...+..-....++|+||.+. .+...+. ....+.+
T Consensus 97 s~rgVDd-IReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRCq~f~F 175 (830)
T PRK07003 97 SNRGVDE-MAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNL 175 (830)
T ss_pred ccccHHH-HHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhheEEEec
Confidence 3333332 34455544322110 111122222 3455777777776555677877777654 3332222 2256899
Q ss_pred CCCChhhHHhhhhccccCCCCCCCCccHHHHHHHHHHHcCCCh-HHHHHH
Q 038448 273 KELSNDDCLSVFSPHSLGEKDFSTHPSLKEIGEKIVKKCNGLP-LVAKSL 321 (385)
Q Consensus 273 ~~L~~~~a~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~c~glP-LAi~~~ 321 (385)
+.++.++..+.+.+.+-. +... --.+....|++.++|.. -|+..+
T Consensus 176 k~Ls~eeIv~~L~~Il~~-EgI~---id~eAL~lIA~~A~GsmRdALsLL 221 (830)
T PRK07003 176 KQMPAGHIVSHLERILGE-ERIA---FEPQALRLLARAAQGSMRDALSLT 221 (830)
T ss_pred CCcCHHHHHHHHHHHHHH-cCCC---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 999999998888765422 1111 12456678899998854 455553
No 38
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.57 E-value=0.0031 Score=62.46 Aligned_cols=154 Identities=16% Similarity=0.101 Sum_probs=86.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcccccccc----------c-------------cceEEEEecCCCCHHHHHHHHHHHhh
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSDVRVHNH----------F-------------DLKAWTCVSEDFDIIRVTKSILKSIA 216 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~----------F-------------~~~~wv~vs~~~~~~~~~~~il~~l~ 216 (385)
...+.++|++|+||||+|+.+++...-... + .-++.+.......+.+ +++++....
T Consensus 43 ~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~-Ir~iie~a~ 121 (507)
T PRK06645 43 AGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPDIIEIDAASKTSVDD-IRRIIESAE 121 (507)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCcEEEeeccCCCCHHH-HHHHHHHHH
Confidence 467889999999999999998764211100 0 1122333333333333 344555443
Q ss_pred cCCCC---CccchHHhh--chhhHhhHhhhccCCCCCcEEE-EEcCChhHHhhcCC-CCcccCCCCChhhHHhhhhcccc
Q 038448 217 SDQLV---DDHDLNLLQ--KYNDWTNRSRLFEAGAPGSKIV-FTTRNLGVAEKMGP-LPAYPLKELSNDDCLSVFSPHSL 289 (385)
Q Consensus 217 ~~~~~---~~~~~~~l~--~~~~w~~l~~~l~~~~~gs~Ii-vTTR~~~va~~~~~-~~~~~l~~L~~~~a~~Lf~~~a~ 289 (385)
..... ..--+++.. ....|+.+...+......+.+| .||+...+...+.. ...+.+.+++.++....+...+-
T Consensus 122 ~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~ 201 (507)
T PRK06645 122 YKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITK 201 (507)
T ss_pred hccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHH
Confidence 22110 001112212 3456777777776555566655 45555555544332 25688999999999988887653
Q ss_pred CCCCCCCCccHHHHHHHHHHHcCCChHHH
Q 038448 290 GEKDFSTHPSLKEIGEKIVKKCNGLPLVA 318 (385)
Q Consensus 290 ~~~~~~~~~~l~~~~~~i~~~c~glPLAi 318 (385)
... ... -.+....|++.++|.+--+
T Consensus 202 ~eg-i~i---e~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 202 QEN-LKT---DIEALRIIAYKSEGSARDA 226 (507)
T ss_pred HcC-CCC---CHHHHHHHHHHcCCCHHHH
Confidence 221 111 1345677899999977444
No 39
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.55 E-value=0.0013 Score=56.55 Aligned_cols=146 Identities=14% Similarity=0.150 Sum_probs=83.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcccccc--------------------ccccceEEEEecC-CCCHHHHHHHHHHHhhcC
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSDVRVH--------------------NHFDLKAWTCVSE-DFDIIRVTKSILKSIASD 218 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~--------------------~~F~~~~wv~vs~-~~~~~~~~~~il~~l~~~ 218 (385)
...+.++|+.|+||||+|..+.....-. .+.+ ..++.... .... +.+++++..+...
T Consensus 14 ~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d-~~~~~~~~~~~~~-~~i~~i~~~~~~~ 91 (188)
T TIGR00678 14 AHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPD-LHRLEPEGQSIKV-DQVRELVEFLSRT 91 (188)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCc-EEEeccccCcCCH-HHHHHHHHHHccC
Confidence 3678999999999999998775532111 1112 23333222 2333 3344455554432
Q ss_pred CCCC---ccchHHhh--chhhHhhHhhhccCCCCCcEEEEEcCCh-hHHhhcC-CCCcccCCCCChhhHHhhhhccccCC
Q 038448 219 QLVD---DHDLNLLQ--KYNDWTNRSRLFEAGAPGSKIVFTTRNL-GVAEKMG-PLPAYPLKELSNDDCLSVFSPHSLGE 291 (385)
Q Consensus 219 ~~~~---~~~~~~l~--~~~~w~~l~~~l~~~~~gs~IivTTR~~-~va~~~~-~~~~~~l~~L~~~~a~~Lf~~~a~~~ 291 (385)
.... .--+++.. ..+.++.+...+......+.+|++|++. .+...+. ....+.+.+++.++....+.+. +
T Consensus 92 ~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g- 168 (188)
T TIGR00678 92 PQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G- 168 (188)
T ss_pred cccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C-
Confidence 2100 01112111 3344666777776555566777777643 2222221 2257899999999988888765 1
Q ss_pred CCCCCCccHHHHHHHHHHHcCCChHH
Q 038448 292 KDFSTHPSLKEIGEKIVKKCNGLPLV 317 (385)
Q Consensus 292 ~~~~~~~~l~~~~~~i~~~c~glPLA 317 (385)
.. .+.+..|+..++|.|..
T Consensus 169 --i~-----~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 169 --IS-----EEAAELLLALAGGSPGA 187 (188)
T ss_pred --CC-----HHHHHHHHHHcCCCccc
Confidence 11 35678899999998853
No 40
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.51 E-value=0.0022 Score=58.34 Aligned_cols=26 Identities=23% Similarity=0.183 Sum_probs=21.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 158 DGLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
+...-+.++|++|+||||+|+.+++.
T Consensus 40 ~~~~~vll~GppGtGKTtlA~~ia~~ 65 (261)
T TIGR02881 40 KQVLHMIFKGNPGTGKTTVARILGKL 65 (261)
T ss_pred CCcceEEEEcCCCCCHHHHHHHHHHH
Confidence 45567889999999999999998763
No 41
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.51 E-value=0.0022 Score=59.01 Aligned_cols=125 Identities=15% Similarity=0.071 Sum_probs=61.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCCCCH--------HHHHHHHHHHhhcCCCCCccchHHhh---
Q 038448 162 VIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSEDFDI--------IRVTKSILKSIASDQLVDDHDLNLLQ--- 230 (385)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~--------~~~~~~il~~l~~~~~~~~~~~~~l~--- 230 (385)
-+.++|++|.||||+|+.+..............|+.++.. +. ..-...++.+..+... ..++.+.+.
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~-~l~~~~~g~~~~~~~~~~~~a~~gvL-~iDEi~~L~~~~ 137 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRD-DLVGQYIGHTAPKTKEILKRAMGGVL-FIDEAYYLYRPD 137 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHH-HHhHhhcccchHHHHHHHHHccCcEE-EEechhhhccCC
Confidence 5789999999999999766543111111111123433321 00 0112233333322110 122333331
Q ss_pred -----chhhHhhHhhhccCCCCCcEEEEEcCChhHHhhc--C------CCCcccCCCCChhhHHhhhhccc
Q 038448 231 -----KYNDWTNRSRLFEAGAPGSKIVFTTRNLGVAEKM--G------PLPAYPLKELSNDDCLSVFSPHS 288 (385)
Q Consensus 231 -----~~~~w~~l~~~l~~~~~gs~IivTTR~~~va~~~--~------~~~~~~l~~L~~~~a~~Lf~~~a 288 (385)
..+.+..+...+.....+.+||+++.....-... . ....+++.+++.++-..++...+
T Consensus 138 ~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l 208 (284)
T TIGR02880 138 NERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLML 208 (284)
T ss_pred CccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHH
Confidence 1223444555555444556777776543332211 1 12457888898888888877654
No 42
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.50 E-value=0.00011 Score=59.19 Aligned_cols=60 Identities=15% Similarity=0.124 Sum_probs=44.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcccccccc-----ccceEEEEecCCCCHHHHHHHHHHHhhcCCC
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSDVRVHNH-----FDLKAWTCVSEDFDIIRVTKSILKSIASDQL 220 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-----F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~ 220 (385)
+-+.+.|+|.+|+|||+++..+..+. ... -..++|++.....+...+...|+.++.....
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~ 67 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQL--NAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLK 67 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHH--HHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSS
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHh--HHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCcccc
Confidence 34789999999999999999998752 211 3456799988877899999999999987765
No 43
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.49 E-value=0.0019 Score=60.46 Aligned_cols=154 Identities=14% Similarity=0.118 Sum_probs=78.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEe--cCCCCHHHHHHHHHHHhhcCCCCC-----ccchHHhh--
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCV--SEDFDIIRVTKSILKSIASDQLVD-----DHDLNLLQ-- 230 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v--s~~~~~~~~~~~il~~l~~~~~~~-----~~~~~~l~-- 230 (385)
.+.+.++|.+|+||||+|+.+.+.. ....+. ..++.+ +...... ...+.+..+....+.. .--+++..
T Consensus 38 ~~~~ll~G~~G~GKt~~~~~l~~~l-~~~~~~-~~~i~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l 114 (319)
T PRK00440 38 MPHLLFAGPPGTGKTTAALALAREL-YGEDWR-ENFLELNASDERGID-VIRNKIKEFARTAPVGGAPFKIIFLDEADNL 114 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH-cCCccc-cceEEeccccccchH-HHHHHHHHHHhcCCCCCCCceEEEEeCcccC
Confidence 3457999999999999999998752 111221 122332 2222222 2222222222111000 00111111
Q ss_pred chhhHhhHhhhccCCCCCcEEEEEcCCh-hHHhhc-CCCCcccCCCCChhhHHhhhhccccCCCCCCCCccHHHHHHHHH
Q 038448 231 KYNDWTNRSRLFEAGAPGSKIVFTTRNL-GVAEKM-GPLPAYPLKELSNDDCLSVFSPHSLGEKDFSTHPSLKEIGEKIV 308 (385)
Q Consensus 231 ~~~~w~~l~~~l~~~~~gs~IivTTR~~-~va~~~-~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~l~~~~~~i~ 308 (385)
..+.+..+...+......+.+|+++... .+.... .....+++.+++.++....+...+-... ... -.+....++
T Consensus 115 ~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~~~-~~i---~~~al~~l~ 190 (319)
T PRK00440 115 TSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAENEG-IEI---TDDALEAIY 190 (319)
T ss_pred CHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeCCCCHHHHHHHHHHHHHHcC-CCC---CHHHHHHHH
Confidence 2223445555555444556777776432 121111 1124578899999988777776543211 111 145677889
Q ss_pred HHcCCChHHHHH
Q 038448 309 KKCNGLPLVAKS 320 (385)
Q Consensus 309 ~~c~glPLAi~~ 320 (385)
+.++|.+--+..
T Consensus 191 ~~~~gd~r~~~~ 202 (319)
T PRK00440 191 YVSEGDMRKAIN 202 (319)
T ss_pred HHcCCCHHHHHH
Confidence 999998755433
No 44
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.48 E-value=0.002 Score=66.91 Aligned_cols=155 Identities=16% Similarity=0.122 Sum_probs=85.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcccccccc-------------------ccceEEEEecCCCCHHHHHHHHHHHhhcCCC
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSDVRVHNH-------------------FDLKAWTCVSEDFDIIRVTKSILKSIASDQL 220 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-------------------F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~ 220 (385)
...+.++|+.|+||||+|+.+.+...-... |.-.+++..+....+ +.+++|+..+.....
T Consensus 38 ~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEidAas~~kV-DdIReLie~v~~~P~ 116 (944)
T PRK14949 38 HHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEVDAASRTKV-DDTRELLDNVQYRPS 116 (944)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEeccccccCH-HHHHHHHHHHHhhhh
Confidence 355689999999999999998865311111 111233433222222 334556555432211
Q ss_pred C---CccchHHhh--chhhHhhHhhhccCCCCCcEEEEEcCC-hhHHhhcC-CCCcccCCCCChhhHHhhhhccccCCCC
Q 038448 221 V---DDHDLNLLQ--KYNDWTNRSRLFEAGAPGSKIVFTTRN-LGVAEKMG-PLPAYPLKELSNDDCLSVFSPHSLGEKD 293 (385)
Q Consensus 221 ~---~~~~~~~l~--~~~~w~~l~~~l~~~~~gs~IivTTR~-~~va~~~~-~~~~~~l~~L~~~~a~~Lf~~~a~~~~~ 293 (385)
. ..-.+++.+ ....++.+...+-......++|++|.+ ..+...+- ....|++.+|+.++....+.+.+-.. .
T Consensus 117 ~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~E-g 195 (944)
T PRK14949 117 RGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQE-Q 195 (944)
T ss_pred cCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHc-C
Confidence 0 111122222 455666676666554455666655543 44443322 22679999999999988877654211 1
Q ss_pred CCCCccHHHHHHHHHHHcCCChHHHH
Q 038448 294 FSTHPSLKEIGEKIVKKCNGLPLVAK 319 (385)
Q Consensus 294 ~~~~~~l~~~~~~i~~~c~glPLAi~ 319 (385)
. .--.+....|++.++|.|--+.
T Consensus 196 I---~~edeAL~lIA~~S~Gd~R~AL 218 (944)
T PRK14949 196 L---PFEAEALTLLAKAANGSMRDAL 218 (944)
T ss_pred C---CCCHHHHHHHHHHcCCCHHHHH
Confidence 1 1123566779999999885333
No 45
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.45 E-value=0.001 Score=68.71 Aligned_cols=146 Identities=16% Similarity=0.148 Sum_probs=72.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecC--CCCHHHHHHHHHHHhhcCCCCCccchHHhh--chhh
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSE--DFDIIRVTKSILKSIASDQLVDDHDLNLLQ--KYND 234 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~--~~~~~~~~~~il~~l~~~~~~~~~~~~~l~--~~~~ 234 (385)
....+.++|++|+||||||+.+++. ....|. .++.+. ..+....+..+...+........--++++. +...
T Consensus 51 ~~~slLL~GPpGtGKTTLA~aIA~~--~~~~f~---~lna~~~~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~q 125 (725)
T PRK13341 51 RVGSLILYGPPGVGKTTLARIIANH--TRAHFS---SLNAVLAGVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQ 125 (725)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH--hcCcce---eehhhhhhhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHH
Confidence 4456789999999999999999985 344442 122111 011222222222212111110111122222 2233
Q ss_pred HhhHhhhccCCCCCcEEEEE--cCChh--HHhhc-CCCCcccCCCCChhhHHhhhhccccC------CCCCCCCccHHHH
Q 038448 235 WTNRSRLFEAGAPGSKIVFT--TRNLG--VAEKM-GPLPAYPLKELSNDDCLSVFSPHSLG------EKDFSTHPSLKEI 303 (385)
Q Consensus 235 w~~l~~~l~~~~~gs~IivT--TR~~~--va~~~-~~~~~~~l~~L~~~~a~~Lf~~~a~~------~~~~~~~~~l~~~ 303 (385)
++.+...+ ..|+.++++ |.+.. +.... +....+.+.+|+.++...++.+.+-. ..... --.+.
T Consensus 126 QdaLL~~l---E~g~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~---I~dea 199 (725)
T PRK13341 126 QDALLPWV---ENGTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVD---LEPEA 199 (725)
T ss_pred HHHHHHHh---cCceEEEEEecCCChHhhhhhHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccC---CCHHH
Confidence 44444433 335555553 44332 21111 12357899999999998888765421 11111 12345
Q ss_pred HHHHHHHcCCCh
Q 038448 304 GEKIVKKCNGLP 315 (385)
Q Consensus 304 ~~~i~~~c~glP 315 (385)
...|++.+.|..
T Consensus 200 L~~La~~s~GD~ 211 (725)
T PRK13341 200 EKHLVDVANGDA 211 (725)
T ss_pred HHHHHHhCCCCH
Confidence 677888888753
No 46
>PLN03025 replication factor C subunit; Provisional
Probab=97.45 E-value=0.0023 Score=60.03 Aligned_cols=151 Identities=15% Similarity=0.103 Sum_probs=77.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcccccccccc-ceEEEEecCCCCHHHHHHHHHHHhhcCCC------CCccchHHhh--
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFD-LKAWTCVSEDFDIIRVTKSILKSIASDQL------VDDHDLNLLQ-- 230 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~il~~l~~~~~------~~~~~~~~l~-- 230 (385)
..-+.++|++|+||||+|..+.+.. ....|. ..+-++.+...+. +.++++++.+..... ...--+++..
T Consensus 34 ~~~lll~Gp~G~GKTtla~~la~~l-~~~~~~~~~~eln~sd~~~~-~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~l 111 (319)
T PLN03025 34 MPNLILSGPPGTGKTTSILALAHEL-LGPNYKEAVLELNASDDRGI-DVVRNKIKMFAQKKVTLPPGRHKIVILDEADSM 111 (319)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH-hcccCccceeeecccccccH-HHHHHHHHHHHhccccCCCCCeEEEEEechhhc
Confidence 3446799999999999999987742 112232 1222333333332 234444433321110 0011112222
Q ss_pred chhhHhhHhhhccCCCCCcEEEEEcCCh-hHHhhcC-CCCcccCCCCChhhHHhhhhccccCCCCCCCCccHHHHHHHHH
Q 038448 231 KYNDWTNRSRLFEAGAPGSKIVFTTRNL-GVAEKMG-PLPAYPLKELSNDDCLSVFSPHSLGEKDFSTHPSLKEIGEKIV 308 (385)
Q Consensus 231 ~~~~w~~l~~~l~~~~~gs~IivTTR~~-~va~~~~-~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~l~~~~~~i~ 308 (385)
.......+...+......+++|+++... .+...+. ....+++.+++.++....+...+-.. ....+ .+....|+
T Consensus 112 t~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~~e-gi~i~---~~~l~~i~ 187 (319)
T PLN03025 112 TSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMKVVEAE-KVPYV---PEGLEAII 187 (319)
T ss_pred CHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCCCHHHHHHHHHHHHHHc-CCCCC---HHHHHHHH
Confidence 2222333444443334556777766432 2221111 12568999999999888877665221 11111 35677889
Q ss_pred HHcCCChH
Q 038448 309 KKCNGLPL 316 (385)
Q Consensus 309 ~~c~glPL 316 (385)
..++|-.-
T Consensus 188 ~~~~gDlR 195 (319)
T PLN03025 188 FTADGDMR 195 (319)
T ss_pred HHcCCCHH
Confidence 99998653
No 47
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.43 E-value=0.00048 Score=68.32 Aligned_cols=154 Identities=11% Similarity=0.044 Sum_probs=84.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcccccccccc------------------ceEEEEecCCCCHHHHHHHHHHHhhcCCC-
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFD------------------LKAWTCVSEDFDIIRVTKSILKSIASDQL- 220 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~------------------~~~wv~vs~~~~~~~~~~~il~~l~~~~~- 220 (385)
...+.++|++|+||||+|+.+.+.......+. .+.+++.+..... +..+++...+.....
T Consensus 36 ~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el~~~~~~~v-d~iR~l~~~~~~~p~~ 114 (504)
T PRK14963 36 GHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEIDAASNNSV-EDVRDLREKVLLAPLR 114 (504)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEecccccCCH-HHHHHHHHHHhhcccc
Confidence 35679999999999999998876532111121 1334443333222 333445444332111
Q ss_pred --CCccchHHhh--chhhHhhHhhhccCCCCCcEEEEEcCC-hhHHhhcCC-CCcccCCCCChhhHHhhhhccccCCCCC
Q 038448 221 --VDDHDLNLLQ--KYNDWTNRSRLFEAGAPGSKIVFTTRN-LGVAEKMGP-LPAYPLKELSNDDCLSVFSPHSLGEKDF 294 (385)
Q Consensus 221 --~~~~~~~~l~--~~~~w~~l~~~l~~~~~gs~IivTTR~-~~va~~~~~-~~~~~l~~L~~~~a~~Lf~~~a~~~~~~ 294 (385)
...--+++.. ....++.+...+......+.+|++|.. ..+...+.. ...+.+.+++.++....+.+.+-... .
T Consensus 115 ~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~eg-i 193 (504)
T PRK14963 115 GGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEG-R 193 (504)
T ss_pred CCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcC-C
Confidence 0011111111 334566677777654455565555543 333332222 35789999999999988887653221 1
Q ss_pred CCCccHHHHHHHHHHHcCCChHHH
Q 038448 295 STHPSLKEIGEKIVKKCNGLPLVA 318 (385)
Q Consensus 295 ~~~~~l~~~~~~i~~~c~glPLAi 318 (385)
.. -.+....|++.++|.+--+
T Consensus 194 ~i---~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 194 EA---EPEALQLVARLADGAMRDA 214 (504)
T ss_pred CC---CHHHHHHHHHHcCCCHHHH
Confidence 11 1456778899999987544
No 48
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.39 E-value=0.0024 Score=61.62 Aligned_cols=115 Identities=18% Similarity=0.159 Sum_probs=72.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCCCCHHHHHHHHHHHhhcCCC--CCccchHHhhchhhHhhHh
Q 038448 162 VIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSEDFDIIRVTKSILKSIASDQL--VDDHDLNLLQKYNDWTNRS 239 (385)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~--~~~~~~~~l~~~~~w~~l~ 239 (385)
++.|.|+-++|||||++.+... ..+. .++++..+......-+.+.......... ....-+|++|....|+...
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~--~~~~---~iy~~~~d~~~~~~~l~d~~~~~~~~~~~~~~yifLDEIq~v~~W~~~l 113 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKG--LLEE---IIYINFDDLRLDRIELLDLLRAYIELKEREKSYIFLDEIQNVPDWERAL 113 (398)
T ss_pred EEEEECCccccHHHHHHHHHhh--CCcc---eEEEEecchhcchhhHHHHHHHHHHhhccCCceEEEecccCchhHHHHH
Confidence 9999999999999999666553 2222 5555543322111111222222222111 1234578888999999988
Q ss_pred hhccCCCCCcEEEEEcCChhHHhhc------CCCCcccCCCCChhhHHh
Q 038448 240 RLFEAGAPGSKIVFTTRNLGVAEKM------GPLPAYPLKELSNDDCLS 282 (385)
Q Consensus 240 ~~l~~~~~gs~IivTTR~~~va~~~------~~~~~~~l~~L~~~~a~~ 282 (385)
..+.+..+. +|++|+-+..+.... +....+.+.||+..|-..
T Consensus 114 k~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~ 161 (398)
T COG1373 114 KYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLK 161 (398)
T ss_pred HHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHh
Confidence 888876666 898888876554322 223568899999988865
No 49
>PTZ00202 tuzin; Provisional
Probab=97.38 E-value=0.0043 Score=59.43 Aligned_cols=69 Identities=17% Similarity=0.170 Sum_probs=48.0
Q ss_pred hhhHHHHHHHHhcCCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCCCCHHHHHHHHHHHhhcC
Q 038448 139 DKEKEETVKLLLRDDLRTDDGLSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSEDFDIIRVTKSILKSIASD 218 (385)
Q Consensus 139 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~ 218 (385)
+.+...+...|.... ....+++.|+|++|+|||||++.+..... + ..++.-.. +..+++..|+.+|+..
T Consensus 268 eaEla~Lr~VL~~~d---~~~privvLtG~~G~GKTTLlR~~~~~l~----~--~qL~vNpr--g~eElLr~LL~ALGV~ 336 (550)
T PTZ00202 268 EAEESWVRQVLRRLD---TAHPRIVVFTGFRGCGKSSLCRSAVRKEG----M--PAVFVDVR--GTEDTLRSVVKALGVP 336 (550)
T ss_pred HHHHHHHHHHHhccC---CCCceEEEEECCCCCCHHHHHHHHHhcCC----c--eEEEECCC--CHHHHHHHHHHHcCCC
Confidence 556666666664322 12346999999999999999999987422 2 13333222 6799999999999963
No 50
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.37 E-value=0.0013 Score=64.53 Aligned_cols=156 Identities=12% Similarity=0.073 Sum_probs=87.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccc--cceEEEEecCCCCHHHHHHHHHHHhhcC-----------CCCCccch
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSDVRVHNHF--DLKAWTCVSEDFDIIRVTKSILKSIASD-----------QLVDDHDL 226 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~il~~l~~~-----------~~~~~~~~ 226 (385)
..-+.|+|..|+|||+|++.+.+. +.... ..+++++. .+++..+...+... ...+.--+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~--l~~~~~~~~v~yv~~------~~f~~~~~~~l~~~~~~~~~~~~~~~~~dvLiI 212 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNY--IESNFSDLKVSYMSG------DEFARKAVDILQKTHKEIEQFKNEICQNDVLII 212 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEEH------HHHHHHHHHHHHHhhhHHHHHHHHhccCCEEEE
Confidence 355889999999999999999884 22211 23345543 23444443333220 00011112
Q ss_pred HHhh---chhhHh-hHhhhccC-CCCCcEEEEEcCCh---------hHHhhcCCCCcccCCCCChhhHHhhhhccccCCC
Q 038448 227 NLLQ---KYNDWT-NRSRLFEA-GAPGSKIVFTTRNL---------GVAEKMGPLPAYPLKELSNDDCLSVFSPHSLGEK 292 (385)
Q Consensus 227 ~~l~---~~~~w~-~l~~~l~~-~~~gs~IivTTR~~---------~va~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~ 292 (385)
|+++ ..+.|. .+...+.. ...|..||+|+... .+...+...-.+.+++++.++-..++.+++-...
T Consensus 213 DDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~g 292 (450)
T PRK14087 213 DDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQN 292 (450)
T ss_pred eccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhcC
Confidence 3332 222332 23333322 13455788887643 2223334445678999999999999988763211
Q ss_pred CCCCCccHHHHHHHHHHHcCCChHHHHHHHHHh
Q 038448 293 DFSTHPSLKEIGEKIVKKCNGLPLVAKSLGGLL 325 (385)
Q Consensus 293 ~~~~~~~l~~~~~~i~~~c~glPLAi~~~~~~L 325 (385)
.. ..--.++..-|+..++|.|-.+.-+...+
T Consensus 293 -l~-~~l~~evl~~Ia~~~~gd~R~L~gaL~~l 323 (450)
T PRK14087 293 -IK-QEVTEEAINFISNYYSDDVRKIKGSVSRL 323 (450)
T ss_pred -CC-CCCCHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 10 01224677889999999987776665544
No 51
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.33 E-value=0.0058 Score=60.21 Aligned_cols=159 Identities=15% Similarity=0.132 Sum_probs=83.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccc-------------------cccceEEEEecCCCCHHHHHHHHHHHhhcCCCC
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHN-------------------HFDLKAWTCVSEDFDIIRVTKSILKSIASDQLV 221 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~-------------------~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~ 221 (385)
..+.++|++|+||||+|+.+.+...... .+.....++.+...+... ++.|..........
T Consensus 37 ~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~aa~~~gid~-iR~i~~~~~~~p~~ 115 (472)
T PRK14962 37 HAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDAASNRGIDE-IRKIRDAVGYRPME 115 (472)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeCcccCCHHH-HHHHHHHHhhChhc
Confidence 5688999999999999998866421100 011233444433333433 34455443322110
Q ss_pred ------CccchHHhhchhhHhhHhhhccCCCCCcEEEEEcCC-hhHHhhcC-CCCcccCCCCChhhHHhhhhccccCCCC
Q 038448 222 ------DDHDLNLLQKYNDWTNRSRLFEAGAPGSKIVFTTRN-LGVAEKMG-PLPAYPLKELSNDDCLSVFSPHSLGEKD 293 (385)
Q Consensus 222 ------~~~~~~~l~~~~~w~~l~~~l~~~~~gs~IivTTR~-~~va~~~~-~~~~~~l~~L~~~~a~~Lf~~~a~~~~~ 293 (385)
..++.+.+ .....+.+...+........+|++|.+ ..+...+. ....+.+.+++.++....+...+....
T Consensus 116 ~~~kVvIIDE~h~L-t~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~eg- 193 (472)
T PRK14962 116 GKYKVYIIDEVHML-TKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEG- 193 (472)
T ss_pred CCeEEEEEEChHHh-HHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcC-
Confidence 11112222 223344555555443334444444433 34433332 235788999999998887776653211
Q ss_pred CCCCccHHHHHHHHHHHcC-CChHHHHHHHHHh
Q 038448 294 FSTHPSLKEIGEKIVKKCN-GLPLVAKSLGGLL 325 (385)
Q Consensus 294 ~~~~~~l~~~~~~i~~~c~-glPLAi~~~~~~L 325 (385)
... -.+....|++.++ +++.|+..+-.+.
T Consensus 194 i~i---~~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 194 IEI---DREALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred CCC---CHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 111 1355677888776 4567777766543
No 52
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.32 E-value=0.0013 Score=62.93 Aligned_cols=149 Identities=12% Similarity=0.080 Sum_probs=73.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCCC--CHHHHHHHHHHHhhcCCCC--CccchHHhh-----
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSEDF--DIIRVTKSILKSIASDQLV--DDHDLNLLQ----- 230 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~~~~~il~~l~~~~~~--~~~~~~~l~----- 230 (385)
.+-+.++|++|+|||+||+.+++. ....|-......+...+ .....++.++.......+. -.++++.+.
T Consensus 156 p~gvLL~GppGtGKT~lakaia~~--l~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~ 233 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVAHE--TNATFIRVVGSELVRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTD 233 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHHHh--CCCCEEecchHHHHHHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhcccccc
Confidence 456899999999999999999985 33333211100000000 1122333444333221110 112222221
Q ss_pred -----ch---hhHhhHhhhccC--CCCCcEEEEEcCChhHHh-hc----CCCCcccCCCCChhhHHhhhhccccCCCCCC
Q 038448 231 -----KY---NDWTNRSRLFEA--GAPGSKIVFTTRNLGVAE-KM----GPLPAYPLKELSNDDCLSVFSPHSLGEKDFS 295 (385)
Q Consensus 231 -----~~---~~w~~l~~~l~~--~~~gs~IivTTR~~~va~-~~----~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~ 295 (385)
+. ..+..+...+.. ...+..||.||....... .+ .....+.+...+.++..++|..++......
T Consensus 234 ~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~- 312 (364)
T TIGR01242 234 SGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLA- 312 (364)
T ss_pred CCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCC-
Confidence 01 112222222221 134567888887543221 11 123467889999999999998775432211
Q ss_pred CCccHHHHHHHHHHHcCCCh
Q 038448 296 THPSLKEIGEKIVKKCNGLP 315 (385)
Q Consensus 296 ~~~~l~~~~~~i~~~c~glP 315 (385)
..-+ ...+++.+.|..
T Consensus 313 ~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 313 EDVD----LEAIAKMTEGAS 328 (364)
T ss_pred ccCC----HHHHHHHcCCCC
Confidence 1112 355777777764
No 53
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.31 E-value=0.0011 Score=58.93 Aligned_cols=153 Identities=16% Similarity=0.143 Sum_probs=77.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCCCCHHHHHHHHHHHhhcCCCCCccchHHhhchhhHhhHh
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSEDFDIIRVTKSILKSIASDQLVDDHDLNLLQKYNDWTNRS 239 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~~~w~~l~ 239 (385)
...+.|+|.+|+|||+||+.+++.. ..... ...+++...... . .........-..++.+.+.. ..-..+.
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~-~~~~~-~~~~i~~~~~~~------~-~~~~~~~~~liiDdi~~l~~-~~~~~L~ 111 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADA-SYGGR-NARYLDAASPLL------A-FDFDPEAELYAVDDVERLDD-AQQIALF 111 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH-HhCCC-cEEEEehHHhHH------H-HhhcccCCEEEEeChhhcCc-hHHHHHH
Confidence 4678899999999999999998852 11222 344555433211 1 11111111001222222211 1111233
Q ss_pred hhccC-CCCCc-EEEEEcCChhHHh--------hcCCCCcccCCCCChhhHHhhhhccccCCCCCCCCccHHHHHHHHHH
Q 038448 240 RLFEA-GAPGS-KIVFTTRNLGVAE--------KMGPLPAYPLKELSNDDCLSVFSPHSLGEKDFSTHPSLKEIGEKIVK 309 (385)
Q Consensus 240 ~~l~~-~~~gs-~IivTTR~~~va~--------~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~ 309 (385)
..+.. ...+. .+|+|++...... .+.....+.+.+|+.++-..++.+.+ ....... -.+....+++
T Consensus 112 ~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~-~~~~v~l---~~~al~~L~~ 187 (227)
T PRK08903 112 NLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAA-AERGLQL---ADEVPDYLLT 187 (227)
T ss_pred HHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHH-HHcCCCC---CHHHHHHHHH
Confidence 33321 12343 3666666433221 22223567899999887666655432 1111111 1456677888
Q ss_pred HcCCChHHHHHHHHHhh
Q 038448 310 KCNGLPLVAKSLGGLLR 326 (385)
Q Consensus 310 ~c~glPLAi~~~~~~L~ 326 (385)
.+.|.|..+..+...|.
T Consensus 188 ~~~gn~~~l~~~l~~l~ 204 (227)
T PRK08903 188 HFRRDMPSLMALLDALD 204 (227)
T ss_pred hccCCHHHHHHHHHHHH
Confidence 88888888777666553
No 54
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.30 E-value=0.0064 Score=58.49 Aligned_cols=149 Identities=10% Similarity=0.049 Sum_probs=81.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcccccc------------------ccccceEEEEec-CCCCHHHHHHHHHHHhhcCCC
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSDVRVH------------------NHFDLKAWTCVS-EDFDIIRVTKSILKSIASDQL 220 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~------------------~~F~~~~wv~vs-~~~~~~~~~~~il~~l~~~~~ 220 (385)
..-+.++|++|+|||++|..+.....-. ..++-..++... ....+.+ .+++.+.+.....
T Consensus 36 ~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hpD~~~i~~~~~~i~i~~-iR~l~~~~~~~p~ 114 (394)
T PRK07940 36 THAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHPDVRVVAPEGLSIGVDE-VRELVTIAARRPS 114 (394)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeccccccCCHHH-HHHHHHHHHhCcc
Confidence 4668899999999999998875421000 011112233222 1223333 4455555543221
Q ss_pred C------CccchHHhhchhhHhhHhhhccCCCCCcEEEEEcCCh-hHHhhcC-CCCcccCCCCChhhHHhhhhccccCCC
Q 038448 221 V------DDHDLNLLQKYNDWTNRSRLFEAGAPGSKIVFTTRNL-GVAEKMG-PLPAYPLKELSNDDCLSVFSPHSLGEK 292 (385)
Q Consensus 221 ~------~~~~~~~l~~~~~w~~l~~~l~~~~~gs~IivTTR~~-~va~~~~-~~~~~~l~~L~~~~a~~Lf~~~a~~~~ 292 (385)
. ..++.+.+ +....+.+...+.....++.+|++|.+. .+...+. ....+.+.+++.++....+....
T Consensus 115 ~~~~kViiIDead~m-~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~---- 189 (394)
T PRK07940 115 TGRWRIVVIEDADRL-TERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRD---- 189 (394)
T ss_pred cCCcEEEEEechhhc-CHHHHHHHHHHhhcCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhc----
Confidence 1 11222222 3334455666655445566666666553 4443322 23678999999999988876432
Q ss_pred CCCCCccHHHHHHHHHHHcCCChHHHH
Q 038448 293 DFSTHPSLKEIGEKIVKKCNGLPLVAK 319 (385)
Q Consensus 293 ~~~~~~~l~~~~~~i~~~c~glPLAi~ 319 (385)
.. + .+.+..++..++|.|....
T Consensus 190 ~~--~---~~~a~~la~~s~G~~~~A~ 211 (394)
T PRK07940 190 GV--D---PETARRAARASQGHIGRAR 211 (394)
T ss_pred CC--C---HHHHHHHHHHcCCCHHHHH
Confidence 11 1 3446778999999886443
No 55
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.30 E-value=0.002 Score=57.66 Aligned_cols=163 Identities=15% Similarity=0.145 Sum_probs=84.4
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCCCCHHHHHHHHHHHhhcCCCCCccchHHhhchhhH
Q 038448 156 TDDGLSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSEDFDIIRVTKSILKSIASDQLVDDHDLNLLQKYNDW 235 (385)
Q Consensus 156 ~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~~~w 235 (385)
.+..+--+.++|++|.||||||.-+.+. ....+. ++-.....-..-+..|+..+...+.-..+.+..+. ...-
T Consensus 48 r~e~lDHvLl~GPPGlGKTTLA~IIA~E--mgvn~k----~tsGp~leK~gDlaaiLt~Le~~DVLFIDEIHrl~-~~vE 120 (332)
T COG2255 48 RGEALDHVLLFGPPGLGKTTLAHIIANE--LGVNLK----ITSGPALEKPGDLAAILTNLEEGDVLFIDEIHRLS-PAVE 120 (332)
T ss_pred cCCCcCeEEeeCCCCCcHHHHHHHHHHH--hcCCeE----ecccccccChhhHHHHHhcCCcCCeEEEehhhhcC-hhHH
Confidence 3456778999999999999999999985 333332 22222222222333444444333221111111111 0000
Q ss_pred hhHhhhc--------cCCCCCcE-----------EEEEcCChhHHhhcCC--CCcccCCCCChhhHHhhhhccccCCCCC
Q 038448 236 TNRSRLF--------EAGAPGSK-----------IVFTTRNLGVAEKMGP--LPAYPLKELSNDDCLSVFSPHSLGEKDF 294 (385)
Q Consensus 236 ~~l~~~l--------~~~~~gs~-----------IivTTR~~~va~~~~~--~~~~~l~~L~~~~a~~Lf~~~a~~~~~~ 294 (385)
+-+.++. -..++++| |=-|||.-.+.+.... ..+.+++--+.+|-..+..+.+.- -+.
T Consensus 121 E~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~-l~i 199 (332)
T COG2255 121 EVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKI-LGI 199 (332)
T ss_pred HHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHH-hCC
Confidence 0011110 01122222 3468886554443322 145677777888887777766521 111
Q ss_pred CCCccHHHHHHHHHHHcCCChHHHHHHHHHhhccc
Q 038448 295 STHPSLKEIGEKIVKKCNGLPLVAKSLGGLLRGFL 329 (385)
Q Consensus 295 ~~~~~l~~~~~~i~~~c~glPLAi~~~~~~L~g~~ 329 (385)
.--.+-+.+|+++..|-|--..-+-+..+.|.
T Consensus 200 ---~i~~~~a~eIA~rSRGTPRIAnRLLrRVRDfa 231 (332)
T COG2255 200 ---EIDEEAALEIARRSRGTPRIANRLLRRVRDFA 231 (332)
T ss_pred ---CCChHHHHHHHHhccCCcHHHHHHHHHHHHHH
Confidence 11245688999999999976665555555443
No 56
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.30 E-value=0.00053 Score=66.12 Aligned_cols=62 Identities=15% Similarity=0.045 Sum_probs=45.7
Q ss_pred hhhHHHHHHHHhcCCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCCCCHHHHH
Q 038448 139 DKEKEETVKLLLRDDLRTDDGLSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSEDFDIIRVT 208 (385)
Q Consensus 139 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 208 (385)
+...+.++..|.. .+.|.++|++|+|||++|+.+++.......|+.+.||++++.++..+++
T Consensus 181 e~~le~l~~~L~~--------~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI 242 (459)
T PRK11331 181 ETTIETILKRLTI--------KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFI 242 (459)
T ss_pred HHHHHHHHHHHhc--------CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHh
Confidence 4556667766643 2567889999999999999998764334567788899988877655544
No 57
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.28 E-value=0.016 Score=53.00 Aligned_cols=63 Identities=14% Similarity=0.151 Sum_probs=48.4
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhcccccc-----ccccceEEEEecCCCCHHHHHHHHHHHhhcCCC
Q 038448 157 DDGLSVIPIIGTGRIGKTTLAQLAYSDVRVH-----NHFDLKAWTCVSEDFDIIRVTKSILKSIASDQL 220 (385)
Q Consensus 157 ~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-----~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~ 220 (385)
.....-+.|||.+|.|||++++++....-.. ..+ .++.|.....++...++..|+.+++....
T Consensus 58 ~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~-PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~ 125 (302)
T PF05621_consen 58 RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERI-PVVYVQMPPEPDERRFYSAILEALGAPYR 125 (302)
T ss_pred ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccc-cEEEEecCCCCChHHHHHHHHHHhCcccC
Confidence 3556779999999999999999998542111 111 46667777889999999999999987654
No 58
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.27 E-value=0.0035 Score=62.55 Aligned_cols=170 Identities=18% Similarity=0.075 Sum_probs=89.7
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccc-------------------cccccceEEEEecCCC
Q 038448 142 KEETVKLLLRDDLRTDDGLSVIPIIGTGRIGKTTLAQLAYSDVRV-------------------HNHFDLKAWTCVSEDF 202 (385)
Q Consensus 142 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-------------------~~~F~~~~wv~vs~~~ 202 (385)
.+.+.+.+..+ .-...+.++|+.|+||||+|+.+.+...- ...|...+++......
T Consensus 25 v~~L~~~i~~~-----rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieidaas~~ 99 (546)
T PRK14957 25 LNSLVHALETQ-----KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAASRT 99 (546)
T ss_pred HHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeeccccc
Confidence 34455555332 23456789999999999999988753110 0123334445443333
Q ss_pred CHHHHHHHHHHHhhcCCC---CCccchHHhh--chhhHhhHhhhccCCCCCcEEEE-EcCChhHHhhcC-CCCcccCCCC
Q 038448 203 DIIRVTKSILKSIASDQL---VDDHDLNLLQ--KYNDWTNRSRLFEAGAPGSKIVF-TTRNLGVAEKMG-PLPAYPLKEL 275 (385)
Q Consensus 203 ~~~~~~~~il~~l~~~~~---~~~~~~~~l~--~~~~w~~l~~~l~~~~~gs~Iiv-TTR~~~va~~~~-~~~~~~l~~L 275 (385)
.+.. .+.|+..+..... ...--+++.. +...++.+...+......+.+|+ ||....+...+. ....+++.++
T Consensus 100 gvd~-ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~SRc~~~~f~~L 178 (546)
T PRK14957 100 GVEE-TKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQLHLKHI 178 (546)
T ss_pred CHHH-HHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHHHheeeEEeCCC
Confidence 3332 3444444432111 0011112222 34556677777765555666664 554444443322 2367899999
Q ss_pred ChhhHHhhhhccccCCCCCCCCccHHHHHHHHHHHcCCCh-HHHHHH
Q 038448 276 SNDDCLSVFSPHSLGEKDFSTHPSLKEIGEKIVKKCNGLP-LVAKSL 321 (385)
Q Consensus 276 ~~~~a~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~c~glP-LAi~~~ 321 (385)
+.++....+...+-. .+. .--......|++.++|.+ .|+..+
T Consensus 179 s~~eI~~~L~~il~~-egi---~~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 179 SQADIKDQLKIILAK-ENI---NSDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred CHHHHHHHHHHHHHH-cCC---CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 999877666654311 111 112345567888888865 444444
No 59
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.26 E-value=0.0016 Score=62.06 Aligned_cols=124 Identities=15% Similarity=0.133 Sum_probs=74.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCCCCHHHHHHHHHHHhhc-----------CCCCCccchH
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSEDFDIIRVTKSILKSIAS-----------DQLVDDHDLN 227 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~-----------~~~~~~~~~~ 227 (385)
....+-|+|..|.|||.|++++.+. .....+....+.++. .....+.+..+.. .+.--.++++
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~--~~~~~~~a~v~y~~s----e~f~~~~v~a~~~~~~~~Fk~~y~~dlllIDDiq 185 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNE--ALANGPNARVVYLTS----EDFTNDFVKALRDNEMEKFKEKYSLDLLLIDDIQ 185 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHH--HHhhCCCceEEeccH----HHHHHHHHHHHHhhhHHHHHHhhccCeeeechHh
Confidence 4678999999999999999999995 445555333343332 2333333333222 1111234444
Q ss_pred HhhchhhHhh-HhhhccC-CCCCcEEEEEcCC---------hhHHhhcCCCCcccCCCCChhhHHhhhhccc
Q 038448 228 LLQKYNDWTN-RSRLFEA-GAPGSKIVFTTRN---------LGVAEKMGPLPAYPLKELSNDDCLSVFSPHS 288 (385)
Q Consensus 228 ~l~~~~~w~~-l~~~l~~-~~~gs~IivTTR~---------~~va~~~~~~~~~~l~~L~~~~a~~Lf~~~a 288 (385)
.+...+.|+. +...|.. ...|-.||+|++. +.+...+...-.+.+.+++.+....++.+++
T Consensus 186 ~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka 257 (408)
T COG0593 186 FLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKA 257 (408)
T ss_pred HhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHH
Confidence 4445555543 3333322 1234489999963 3444455556778999999999998888765
No 60
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.26 E-value=0.006 Score=61.61 Aligned_cols=171 Identities=14% Similarity=0.106 Sum_probs=92.7
Q ss_pred hhHHHHHHHHhcCCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccc-------------------cccccceEEEEecC
Q 038448 140 KEKEETVKLLLRDDLRTDDGLSVIPIIGTGRIGKTTLAQLAYSDVRV-------------------HNHFDLKAWTCVSE 200 (385)
Q Consensus 140 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-------------------~~~F~~~~wv~vs~ 200 (385)
.-++.|.+++..+. -...+.++|+.|+||||+|+.+.+...- ...|.-.+.+..+.
T Consensus 22 ~vv~~L~~aI~~gr-----l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEIDAAs 96 (702)
T PRK14960 22 HVSRALSSALERGR-----LHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAAS 96 (702)
T ss_pred HHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEecccc
Confidence 33455566664332 2467899999999999999887653211 01122234444443
Q ss_pred CCCHHHHHHHHHHHhhcCCCC---CccchHHhh--chhhHhhHhhhccCCCCCcEEEEEcCCh-hHHhh-cCCCCcccCC
Q 038448 201 DFDIIRVTKSILKSIASDQLV---DDHDLNLLQ--KYNDWTNRSRLFEAGAPGSKIVFTTRNL-GVAEK-MGPLPAYPLK 273 (385)
Q Consensus 201 ~~~~~~~~~~il~~l~~~~~~---~~~~~~~l~--~~~~w~~l~~~l~~~~~gs~IivTTR~~-~va~~-~~~~~~~~l~ 273 (385)
...+.. .++++..+...... ..--+++.. +...++.+...+.....+.++|++|.+. .+... .+....+++.
T Consensus 97 ~~~Vdd-IReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlSRCq~feFk 175 (702)
T PRK14960 97 RTKVED-TRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLR 175 (702)
T ss_pred cCCHHH-HHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHHhhheeecc
Confidence 333333 34455544221110 111122222 3345566666665545566788777653 23222 1223678999
Q ss_pred CCChhhHHhhhhccccCCCCCCCCccHHHHHHHHHHHcCCChHHHHH
Q 038448 274 ELSNDDCLSVFSPHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVAKS 320 (385)
Q Consensus 274 ~L~~~~a~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~c~glPLAi~~ 320 (385)
+++.++....+...+-... .. --.+....|++.++|.+-.+..
T Consensus 176 pLs~eEI~k~L~~Il~kEg-I~---id~eAL~~IA~~S~GdLRdALn 218 (702)
T PRK14960 176 PLAVDEITKHLGAILEKEQ-IA---ADQDAIWQIAESAQGSLRDALS 218 (702)
T ss_pred CCCHHHHHHHHHHHHHHcC-CC---CCHHHHHHHHHHcCCCHHHHHH
Confidence 9999998887766542211 11 1135567788999987744433
No 61
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.26 E-value=0.0039 Score=62.62 Aligned_cols=142 Identities=13% Similarity=0.158 Sum_probs=76.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccc--cceEEEEecCCCCHHHHHHHHHHHhhc------------CCCCCccch
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHNHF--DLKAWTCVSEDFDIIRVTKSILKSIAS------------DQLVDDHDL 226 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~il~~l~~------------~~~~~~~~~ 226 (385)
..+.|+|..|+|||.|++.+.+. ....+ ..+++++.. +++.++...+.. .+.-..+++
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~--a~~~~~g~~V~Yitae------ef~~el~~al~~~~~~~f~~~y~~~DLLlIDDI 386 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHY--ARRLYPGTRVRYVSSE------EFTNEFINSIRDGKGDSFRRRYREMDILLVDDI 386 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeHH------HHHHHHHHHHHhccHHHHHHHhhcCCEEEEehh
Confidence 45899999999999999999985 33222 234566542 222222222211 111012333
Q ss_pred HHhhchhhHhh-HhhhccC-CCCCcEEEEEcCCh---------hHHhhcCCCCcccCCCCChhhHHhhhhccccCCCCCC
Q 038448 227 NLLQKYNDWTN-RSRLFEA-GAPGSKIVFTTRNL---------GVAEKMGPLPAYPLKELSNDDCLSVFSPHSLGEKDFS 295 (385)
Q Consensus 227 ~~l~~~~~w~~-l~~~l~~-~~~gs~IivTTR~~---------~va~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~ 295 (385)
+.+...+.|.. +...+.. ...|..||+||... .+...+...-.+.+.+.+.+.-..++.+++-.. ...
T Consensus 387 q~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r-~l~ 465 (617)
T PRK14086 387 QFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQE-QLN 465 (617)
T ss_pred ccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhc-CCC
Confidence 33333344432 3332221 13355688888752 233344455678999999999999988876332 111
Q ss_pred CCccHHHHHHHHHHHcCCC
Q 038448 296 THPSLKEIGEKIVKKCNGL 314 (385)
Q Consensus 296 ~~~~l~~~~~~i~~~c~gl 314 (385)
.+ .++..-|++.+.+.
T Consensus 466 l~---~eVi~yLa~r~~rn 481 (617)
T PRK14086 466 AP---PEVLEFIASRISRN 481 (617)
T ss_pred CC---HHHHHHHHHhccCC
Confidence 11 34455555555544
No 62
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.21 E-value=0.004 Score=60.78 Aligned_cols=151 Identities=13% Similarity=0.022 Sum_probs=79.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccc--cc-c----------------ceEEEEecCCCCHHHHHHHHHHHhhcCCCC
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHN--HF-D----------------LKAWTCVSEDFDIIRVTKSILKSIASDQLV 221 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~--~F-~----------------~~~wv~vs~~~~~~~~~~~il~~l~~~~~~ 221 (385)
..+.++|+.|+||||+|+.+.+...-.. .+ . ..+.+......++ +..+++...+......
T Consensus 41 ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dviEIdaas~~gV-d~IReL~e~l~~~p~~ 119 (484)
T PRK14956 41 HAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVLEIDAASNRGI-ENIRELRDNVKFAPMG 119 (484)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccceeechhhcccH-HHHHHHHHHHHhhhhc
Confidence 4688999999999999999876421110 00 0 0111222222222 2334444444321110
Q ss_pred ---CccchHHhh--chhhHhhHhhhccCCCCCcEEE-EEcCChhHHhhcCC-CCcccCCCCChhhHHhhhhccccCCCCC
Q 038448 222 ---DDHDLNLLQ--KYNDWTNRSRLFEAGAPGSKIV-FTTRNLGVAEKMGP-LPAYPLKELSNDDCLSVFSPHSLGEKDF 294 (385)
Q Consensus 222 ---~~~~~~~l~--~~~~w~~l~~~l~~~~~gs~Ii-vTTR~~~va~~~~~-~~~~~l~~L~~~~a~~Lf~~~a~~~~~~ 294 (385)
..--+++.+ ..+.++.+...+........+| .||....+...+.. ...|.+.+++.++-...+...+-..+ .
T Consensus 120 g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Eg-i 198 (484)
T PRK14956 120 GKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIEN-V 198 (484)
T ss_pred CCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcC-C
Confidence 111122222 4456777766665433445545 44444444333322 25689999999888777766542211 1
Q ss_pred CCCccHHHHHHHHHHHcCCChH
Q 038448 295 STHPSLKEIGEKIVKKCNGLPL 316 (385)
Q Consensus 295 ~~~~~l~~~~~~i~~~c~glPL 316 (385)
. --.+....|++.++|.|-
T Consensus 199 ~---~e~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 199 Q---YDQEGLFWIAKKGDGSVR 217 (484)
T ss_pred C---CCHHHHHHHHHHcCChHH
Confidence 1 124566778899998873
No 63
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.20 E-value=0.00027 Score=56.04 Aligned_cols=22 Identities=41% Similarity=0.376 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 038448 162 VIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
+|.|.|++|+||||+|+.+...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999874
No 64
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.20 E-value=0.00057 Score=58.40 Aligned_cols=44 Identities=20% Similarity=0.253 Sum_probs=27.3
Q ss_pred hhhhHHHHHHHHhcCCCCCCCCceEEEEEcCCCCcHHHHHHHHhccc
Q 038448 138 KDKEKEETVKLLLRDDLRTDDGLSVIPIIGTGRIGKTTLAQLAYSDV 184 (385)
Q Consensus 138 ~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 184 (385)
++++.+.+...|.. . .....+.+.|+|.+|+|||+|.+.++...
T Consensus 5 R~~e~~~l~~~l~~-~--~~~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 5 REEEIERLRDLLDA-A--QSGSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp -HHHHHHHHHTTGG-T--SS-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-H--HcCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 35566777777741 1 33566999999999999999999998863
No 65
>PRK06620 hypothetical protein; Validated
Probab=97.17 E-value=0.0044 Score=54.50 Aligned_cols=133 Identities=11% Similarity=0.041 Sum_probs=68.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCCCCHHHHHHHHHHHhhcCCCCCccchHHhhchhhHhhHhh
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSEDFDIIRVTKSILKSIASDQLVDDHDLNLLQKYNDWTNRSR 240 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~~~w~~l~~ 240 (385)
+.+-|+|++|+|||+|++.+.+... . .++. ..+... ....+. ..--.++++.++. ...-.+..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~--~-----~~~~--~~~~~~----~~~~~~---d~lliDdi~~~~~-~~lf~l~N 107 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN--A-----YIIK--DIFFNE----EILEKY---NAFIIEDIENWQE-PALLHIFN 107 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC--C-----EEcc--hhhhch----hHHhcC---CEEEEeccccchH-HHHHHHHH
Confidence 6789999999999999999877532 1 2222 111111 111110 0001122221111 11112222
Q ss_pred hccCCCCCcEEEEEcCChh-------HHhhcCCCCcccCCCCChhhHHhhhhccccCCCCCCCCccHHHHHHHHHHHcCC
Q 038448 241 LFEAGAPGSKIVFTTRNLG-------VAEKMGPLPAYPLKELSNDDCLSVFSPHSLGEKDFSTHPSLKEIGEKIVKKCNG 313 (385)
Q Consensus 241 ~l~~~~~gs~IivTTR~~~-------va~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~c~g 313 (385)
.+. ..|..||+|++... +...+...-++.+++++.++-..++.+.+.. .....+ +++..-|++.+.|
T Consensus 108 ~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~-~~l~l~---~ev~~~L~~~~~~ 181 (214)
T PRK06620 108 IIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSI-SSVTIS---RQIIDFLLVNLPR 181 (214)
T ss_pred HHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHH-cCCCCC---HHHHHHHHHHccC
Confidence 222 45678999987432 2233334457889999988877777665421 111111 4566667777776
Q ss_pred ChH
Q 038448 314 LPL 316 (385)
Q Consensus 314 lPL 316 (385)
---
T Consensus 182 d~r 184 (214)
T PRK06620 182 EYS 184 (214)
T ss_pred CHH
Confidence 543
No 66
>PRK07261 topology modulation protein; Provisional
Probab=97.16 E-value=0.0009 Score=56.72 Aligned_cols=51 Identities=25% Similarity=0.195 Sum_probs=31.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcccccc-ccccceEEEEecCCCCHHHHHHHHH
Q 038448 162 VIPIIGTGRIGKTTLAQLAYSDVRVH-NHFDLKAWTCVSEDFDIIRVTKSIL 212 (385)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~~~~~-~~F~~~~wv~vs~~~~~~~~~~~il 212 (385)
.|.|+|++|+||||||+.+.....+. -+.|...|-......+...+...+.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~ 53 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNWQERDDDDMIADIS 53 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccccccCCHHHHHHHHH
Confidence 48899999999999999987542221 2345566643322333344444433
No 67
>PRK04195 replication factor C large subunit; Provisional
Probab=97.14 E-value=0.0063 Score=60.47 Aligned_cols=167 Identities=15% Similarity=0.106 Sum_probs=85.9
Q ss_pred hhhHHHHHHHHhcCCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCCCCHHHHHHHHHHHhhcC
Q 038448 139 DKEKEETVKLLLRDDLRTDDGLSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSEDFDIIRVTKSILKSIASD 218 (385)
Q Consensus 139 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~ 218 (385)
+..++.+.+|+.... .....+.+.|+|++|+||||+|+.+++.. .|+ .+-++.+...+. ..+..++......
T Consensus 20 ~~~~~~l~~~l~~~~--~g~~~~~lLL~GppG~GKTtla~ala~el----~~~-~ielnasd~r~~-~~i~~~i~~~~~~ 91 (482)
T PRK04195 20 EKAKEQLREWIESWL--KGKPKKALLLYGPPGVGKTSLAHALANDY----GWE-VIELNASDQRTA-DVIERVAGEAATS 91 (482)
T ss_pred HHHHHHHHHHHHHHh--cCCCCCeEEEECCCCCCHHHHHHHHHHHc----CCC-EEEEcccccccH-HHHHHHHHHhhcc
Confidence 344455556654321 11226789999999999999999998852 122 233444443222 3333333332221
Q ss_pred CC-----C---CccchHHhh---chhhHhhHhhhccCCCCCcEEEEEcCChh-HHh-hc-CCCCcccCCCCChhhHHhhh
Q 038448 219 QL-----V---DDHDLNLLQ---KYNDWTNRSRLFEAGAPGSKIVFTTRNLG-VAE-KM-GPLPAYPLKELSNDDCLSVF 284 (385)
Q Consensus 219 ~~-----~---~~~~~~~l~---~~~~w~~l~~~l~~~~~gs~IivTTR~~~-va~-~~-~~~~~~~l~~L~~~~a~~Lf 284 (385)
.. . ..++.+.+. +...+..+...+.. .+..||+|+.+.. ... .. .....+.+.+++.++....+
T Consensus 92 ~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L 169 (482)
T PRK04195 92 GSLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLRELRNACLMIEFKRLSTRSIVPVL 169 (482)
T ss_pred CcccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhhHhccceEEEecCCCHHHHHHHH
Confidence 10 0 111122221 11234555555542 3345666664321 111 11 12256788999998887777
Q ss_pred hccccCCCCCCCCccHHHHHHHHHHHcCCChHHHH
Q 038448 285 SPHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVAK 319 (385)
Q Consensus 285 ~~~a~~~~~~~~~~~l~~~~~~i~~~c~glPLAi~ 319 (385)
...+.... ...+ .+....|++.++|-.-.+.
T Consensus 170 ~~i~~~eg-i~i~---~eaL~~Ia~~s~GDlR~ai 200 (482)
T PRK04195 170 KRICRKEG-IECD---DEALKEIAERSGGDLRSAI 200 (482)
T ss_pred HHHHHHcC-CCCC---HHHHHHHHHHcCCCHHHHH
Confidence 66543221 1122 3567778888888654443
No 68
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.13 E-value=0.016 Score=55.18 Aligned_cols=172 Identities=12% Similarity=0.097 Sum_probs=90.4
Q ss_pred hhhHHHHHHHHhcCCCCCCCCceEEEEEcCCCCcHHHHHHHHhcccc---cc-----------------ccccceEEEEe
Q 038448 139 DKEKEETVKLLLRDDLRTDDGLSVIPIIGTGRIGKTTLAQLAYSDVR---VH-----------------NHFDLKAWTCV 198 (385)
Q Consensus 139 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~---~~-----------------~~F~~~~wv~v 198 (385)
+..++.+.+++.... -...+.++|++|+||||+|+.+..... .. .+++ .+++..
T Consensus 20 ~~~~~~l~~~~~~~~-----~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~-~~~~~~ 93 (355)
T TIGR02397 20 EHIVQTLKNAIKNGR-----IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLD-VIEIDA 93 (355)
T ss_pred HHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEeec
Confidence 334455555553321 235788999999999999987764311 00 1222 233433
Q ss_pred cCCCCHHHHHHHHHHHhhcCCCC---C---ccchHHhhchhhHhhHhhhccCCCCCcEEEEEcCChh-HHhhcC-CCCcc
Q 038448 199 SEDFDIIRVTKSILKSIASDQLV---D---DHDLNLLQKYNDWTNRSRLFEAGAPGSKIVFTTRNLG-VAEKMG-PLPAY 270 (385)
Q Consensus 199 s~~~~~~~~~~~il~~l~~~~~~---~---~~~~~~l~~~~~w~~l~~~l~~~~~gs~IivTTR~~~-va~~~~-~~~~~ 270 (385)
+..... .-.++++..+...... . .++.+.+ ....++.+...+......+.+|++|.+.. +...+. ....+
T Consensus 94 ~~~~~~-~~~~~l~~~~~~~p~~~~~~vviidea~~l-~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~ 171 (355)
T TIGR02397 94 ASNNGV-DDIREILDNVKYAPSSGKYKVYIIDEVHML-SKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILSRCQRF 171 (355)
T ss_pred cccCCH-HHHHHHHHHHhcCcccCCceEEEEeChhhc-CHHHHHHHHHHHhCCccceeEEEEeCCHHHHHHHHHhheeEE
Confidence 322222 2234454444322110 0 1111111 22345566666654445666667765443 232222 22467
Q ss_pred cCCCCChhhHHhhhhccccCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHH
Q 038448 271 PLKELSNDDCLSVFSPHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVAKSLG 322 (385)
Q Consensus 271 ~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~c~glPLAi~~~~ 322 (385)
++.+++.++....+...+-... ...+ .+.+..+++.++|.|..+....
T Consensus 172 ~~~~~~~~~l~~~l~~~~~~~g-~~i~---~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 172 DFKRIPLEDIVERLKKILDKEG-IKIE---DEALELIARAADGSLRDALSLL 219 (355)
T ss_pred EcCCCCHHHHHHHHHHHHHHcC-CCCC---HHHHHHHHHHcCCChHHHHHHH
Confidence 8889999888777776542211 1111 3567788999999886665544
No 69
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.11 E-value=0.011 Score=58.88 Aligned_cols=172 Identities=12% Similarity=0.042 Sum_probs=91.1
Q ss_pred hhhHHHHHHHHhcCCCCCCCCceEEEEEcCCCCcHHHHHHHHhcccccc-------------------ccccceEEEEec
Q 038448 139 DKEKEETVKLLLRDDLRTDDGLSVIPIIGTGRIGKTTLAQLAYSDVRVH-------------------NHFDLKAWTCVS 199 (385)
Q Consensus 139 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-------------------~~F~~~~wv~vs 199 (385)
+.-++.|.+++.... -...+.++|++|+||||+|+.+.+...-. ..|.-.+.+..+
T Consensus 22 ~~v~~~L~~~~~~~~-----l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eidaa 96 (509)
T PRK14958 22 APVVRALSNALDQQY-----LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDAA 96 (509)
T ss_pred HHHHHHHHHHHHhCC-----CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEccc
Confidence 333455666664322 23567899999999999998876532111 112224445544
Q ss_pred CCCCHHHHHHHHHHHhhcCCCC---CccchHHhh--chhhHhhHhhhccCCCCCcEEEEEcCC-hhHHhhcC-CCCcccC
Q 038448 200 EDFDIIRVTKSILKSIASDQLV---DDHDLNLLQ--KYNDWTNRSRLFEAGAPGSKIVFTTRN-LGVAEKMG-PLPAYPL 272 (385)
Q Consensus 200 ~~~~~~~~~~~il~~l~~~~~~---~~~~~~~l~--~~~~w~~l~~~l~~~~~gs~IivTTR~-~~va~~~~-~~~~~~l 272 (385)
....+.+ .++++..+...... ..--+++.. ..+..+.+...+......+++|++|.+ ..+...+. ....+++
T Consensus 97 s~~~v~~-iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SRc~~~~f 175 (509)
T PRK14958 97 SRTKVED-TRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCLQFHL 175 (509)
T ss_pred ccCCHHH-HHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHHHhhhhhc
Confidence 4444444 35566654332211 011122222 344566666666655556777665543 33332221 2256889
Q ss_pred CCCChhhHHhhhhccccCCCCCCCCccHHHHHHHHHHHcCCChHHHHH
Q 038448 273 KELSNDDCLSVFSPHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVAKS 320 (385)
Q Consensus 273 ~~L~~~~a~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~c~glPLAi~~ 320 (385)
.+++.++-...+...+-. .+... -......|++.++|.|--+..
T Consensus 176 ~~l~~~~i~~~l~~il~~-egi~~---~~~al~~ia~~s~GslR~al~ 219 (509)
T PRK14958 176 AQLPPLQIAAHCQHLLKE-ENVEF---ENAALDLLARAANGSVRDALS 219 (509)
T ss_pred CCCCHHHHHHHHHHHHHH-cCCCC---CHHHHHHHHHHcCCcHHHHHH
Confidence 999988876655443311 11111 134466788899998754443
No 70
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.11 E-value=0.0056 Score=59.25 Aligned_cols=155 Identities=12% Similarity=0.105 Sum_probs=82.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccc----------------------------cccceEEEEecCCCCHHHHHHHH
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSDVRVHN----------------------------HFDLKAWTCVSEDFDIIRVTKSI 211 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----------------------------~F~~~~wv~vs~~~~~~~~~~~i 211 (385)
...+.++|++|+||||+|..+.+...-.. +++. ..+..+..... +-++++
T Consensus 38 ~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~~~n~-~~~~~~~~~~i-d~Ir~l 115 (397)
T PRK14955 38 GHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAGTSLNI-SEFDAASNNSV-DDIRLL 115 (397)
T ss_pred ceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcCCCCCe-EeecccccCCH-HHHHHH
Confidence 35588999999999999988765321100 1111 11221122222 333445
Q ss_pred HHHhhcCCCC---CccchHHhh--chhhHhhHhhhccCCCCCcEEEEEc-CChhHHhhcCC-CCcccCCCCChhhHHhhh
Q 038448 212 LKSIASDQLV---DDHDLNLLQ--KYNDWTNRSRLFEAGAPGSKIVFTT-RNLGVAEKMGP-LPAYPLKELSNDDCLSVF 284 (385)
Q Consensus 212 l~~l~~~~~~---~~~~~~~l~--~~~~w~~l~~~l~~~~~gs~IivTT-R~~~va~~~~~-~~~~~l~~L~~~~a~~Lf 284 (385)
...+...... ..--+++.. ....|+.+...+....+.+.+|++| +...+...+.. ...+++.+++.++....+
T Consensus 116 ~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l 195 (397)
T PRK14955 116 RENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLEEIQQQL 195 (397)
T ss_pred HHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 5555322210 011112222 3346777777776655566666555 43444332221 246889999998887766
Q ss_pred hccccCCCCCCCCccHHHHHHHHHHHcCCChHHHHH
Q 038448 285 SPHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVAKS 320 (385)
Q Consensus 285 ~~~a~~~~~~~~~~~l~~~~~~i~~~c~glPLAi~~ 320 (385)
...+-.. ... --.+.+..|+..++|.+--+..
T Consensus 196 ~~~~~~~-g~~---i~~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 196 QGICEAE-GIS---VDADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred HHHHHHc-CCC---CCHHHHHHHHHHcCCCHHHHHH
Confidence 6543211 111 1145678899999997754444
No 71
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.10 E-value=0.0043 Score=63.04 Aligned_cols=154 Identities=14% Similarity=0.104 Sum_probs=83.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcccccc-------------------ccccceEEEEecCCCCHHHHHHHHHHHhhcCCCC
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVH-------------------NHFDLKAWTCVSEDFDIIRVTKSILKSIASDQLV 221 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~-------------------~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~ 221 (385)
..+.++|..|+||||+|+.+.+...-. ..|.-.+.+..+....+. -+++|+..+......
T Consensus 39 hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ieidaas~~~Vd-diR~li~~~~~~p~~ 117 (647)
T PRK07994 39 HAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLIEIDAASRTKVE-DTRELLDNVQYAPAR 117 (647)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCceeecccccCCHH-HHHHHHHHHHhhhhc
Confidence 557899999999999998886542110 012122344433222333 345555554322110
Q ss_pred ---CccchHHhh--chhhHhhHhhhccCCCCCcEEEEEcCC-hhHHhhcC-CCCcccCCCCChhhHHhhhhccccCCCCC
Q 038448 222 ---DDHDLNLLQ--KYNDWTNRSRLFEAGAPGSKIVFTTRN-LGVAEKMG-PLPAYPLKELSNDDCLSVFSPHSLGEKDF 294 (385)
Q Consensus 222 ---~~~~~~~l~--~~~~w~~l~~~l~~~~~gs~IivTTR~-~~va~~~~-~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~ 294 (385)
..--+++.. +....+.+...+-......++|++|.+ ..+...+. ....|++.+|+.++....+...+-.. ..
T Consensus 118 g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e-~i 196 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAE-QI 196 (647)
T ss_pred CCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHc-CC
Confidence 111122222 445566666666554455566555444 44433222 23678999999999888777543111 11
Q ss_pred CCCccHHHHHHHHHHHcCCChHHHH
Q 038448 295 STHPSLKEIGEKIVKKCNGLPLVAK 319 (385)
Q Consensus 295 ~~~~~l~~~~~~i~~~c~glPLAi~ 319 (385)
..-......|++.++|.|--+.
T Consensus 197 ---~~e~~aL~~Ia~~s~Gs~R~Al 218 (647)
T PRK07994 197 ---PFEPRALQLLARAADGSMRDAL 218 (647)
T ss_pred ---CCCHHHHHHHHHHcCCCHHHHH
Confidence 1113456778899999775333
No 72
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=97.08 E-value=0.0088 Score=61.97 Aligned_cols=78 Identities=13% Similarity=-0.002 Sum_probs=51.3
Q ss_pred hhhHHHHHHHHhcCCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccc---ccccc--ceEEEEecCCCCHHHHHHHHHH
Q 038448 139 DKEKEETVKLLLRDDLRTDDGLSVIPIIGTGRIGKTTLAQLAYSDVRV---HNHFD--LKAWTCVSEDFDIIRVTKSILK 213 (385)
Q Consensus 139 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~---~~~F~--~~~wv~vs~~~~~~~~~~~il~ 213 (385)
+++.+.|...|..... ......++-|+|.+|.|||+.++.|.....- ....+ .+++|+...-.+...++..|..
T Consensus 761 EeEIeeLasfL~paIk-gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~q 839 (1164)
T PTZ00112 761 EKEIKEVHGFLESGIK-QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYK 839 (1164)
T ss_pred HHHHHHHHHHHHHHHh-cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHH
Confidence 8888888888755322 2223367789999999999999999864211 11122 2456665555567777777777
Q ss_pred Hhhc
Q 038448 214 SIAS 217 (385)
Q Consensus 214 ~l~~ 217 (385)
++..
T Consensus 840 qL~g 843 (1164)
T PTZ00112 840 QLFN 843 (1164)
T ss_pred HHcC
Confidence 7743
No 73
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.08 E-value=0.0063 Score=61.65 Aligned_cols=170 Identities=12% Similarity=0.097 Sum_probs=91.4
Q ss_pred hHHHHHHHHhcCCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccc------------------------cccccceEEE
Q 038448 141 EKEETVKLLLRDDLRTDDGLSVIPIIGTGRIGKTTLAQLAYSDVRV------------------------HNHFDLKAWT 196 (385)
Q Consensus 141 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------------------------~~~F~~~~wv 196 (385)
-+..|.+++..+. -...+.++|..|+||||+|+.+.+...- ...+.-.+++
T Consensus 24 vv~~L~~~l~~~r-----l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~h~D~~el 98 (618)
T PRK14951 24 VVQALTNALTQQR-----LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGRFVDYTEL 98 (618)
T ss_pred HHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCCCCceeec
Confidence 3445555554322 3467789999999999999888432100 0012223444
Q ss_pred EecCCCCHHHHHHHHHHHhhcCCCC---CccchHHhh--chhhHhhHhhhccCCCCCcEEEEEc-CChhHHhhc-CCCCc
Q 038448 197 CVSEDFDIIRVTKSILKSIASDQLV---DDHDLNLLQ--KYNDWTNRSRLFEAGAPGSKIVFTT-RNLGVAEKM-GPLPA 269 (385)
Q Consensus 197 ~vs~~~~~~~~~~~il~~l~~~~~~---~~~~~~~l~--~~~~w~~l~~~l~~~~~gs~IivTT-R~~~va~~~-~~~~~ 269 (385)
..+....+.. .+++++.+...... ..--+++.. +...++.+...+.......++|++| ....+...+ +....
T Consensus 99 daas~~~Vd~-iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TIlSRc~~ 177 (618)
T PRK14951 99 DAASNRGVDE-VQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCLQ 177 (618)
T ss_pred CcccccCHHH-HHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHHHHHhcee
Confidence 4433333333 35555554322210 111122222 4455666777766544566666555 434443322 22367
Q ss_pred ccCCCCChhhHHhhhhccccCCCCCCCCccHHHHHHHHHHHcCCChHHHHH
Q 038448 270 YPLKELSNDDCLSVFSPHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVAKS 320 (385)
Q Consensus 270 ~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~c~glPLAi~~ 320 (385)
+++++++.++....+.+.+-.. .... -.+....|++.++|.+--+..
T Consensus 178 ~~f~~Ls~eei~~~L~~i~~~e-gi~i---e~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 178 FNLRPMAPETVLEHLTQVLAAE-NVPA---EPQALRLLARAARGSMRDALS 224 (618)
T ss_pred eecCCCCHHHHHHHHHHHHHHc-CCCC---CHHHHHHHHHHcCCCHHHHHH
Confidence 8999999999887777654221 1111 135567788899987744443
No 74
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.08 E-value=0.0055 Score=60.36 Aligned_cols=153 Identities=15% Similarity=0.139 Sum_probs=86.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccc------c------------c-cccccceEEEEecCCCCHHHHHHHHHHHhhcCCC
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSDV------R------------V-HNHFDLKAWTCVSEDFDIIRVTKSILKSIASDQL 220 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~------~------------~-~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~ 220 (385)
...+.++|+.|+||||+|+.+.... . + ...+.-++.+..+....+.+ .++|+........
T Consensus 35 ~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eidaas~~~vdd-IR~Iie~~~~~P~ 113 (491)
T PRK14964 35 PQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDAASNTSVDD-IKVILENSCYLPI 113 (491)
T ss_pred CceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEecccCCCHHH-HHHHHHHHHhccc
Confidence 3578899999999999998876410 0 0 01122345566554444444 4455555432221
Q ss_pred C------CccchHHhhchhhHhhHhhhccCCCCCcEEEEEc-CChhHHhhcC-CCCcccCCCCChhhHHhhhhccccCCC
Q 038448 221 V------DDHDLNLLQKYNDWTNRSRLFEAGAPGSKIVFTT-RNLGVAEKMG-PLPAYPLKELSNDDCLSVFSPHSLGEK 292 (385)
Q Consensus 221 ~------~~~~~~~l~~~~~w~~l~~~l~~~~~gs~IivTT-R~~~va~~~~-~~~~~~l~~L~~~~a~~Lf~~~a~~~~ 292 (385)
. ..++.+.+ .....+.+...+....+.+++|++| ....+...+. ....+.+.+++.++....+.+.+....
T Consensus 114 ~~~~KVvIIDEah~L-s~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Eg 192 (491)
T PRK14964 114 SSKFKVYIIDEVHML-SNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKEN 192 (491)
T ss_pred cCCceEEEEeChHhC-CHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcC
Confidence 0 01111111 3345666777776555666666555 4445544332 236689999999998887776653221
Q ss_pred CCCCCccHHHHHHHHHHHcCCChHHH
Q 038448 293 DFSTHPSLKEIGEKIVKKCNGLPLVA 318 (385)
Q Consensus 293 ~~~~~~~l~~~~~~i~~~c~glPLAi 318 (385)
. . --.+....|++.++|.+--+
T Consensus 193 i-~---i~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 193 I-E---HDEESLKLIAENSSGSMRNA 214 (491)
T ss_pred C-C---CCHHHHHHHHHHcCCCHHHH
Confidence 1 1 11345677889998877543
No 75
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.04 E-value=0.011 Score=62.10 Aligned_cols=167 Identities=10% Similarity=0.033 Sum_probs=88.5
Q ss_pred hHHHHHHHHhcCCCCCCCCceEEEEEcCCCCcHHHHHHHHhcccccc----------------------ccccceEEEEe
Q 038448 141 EKEETVKLLLRDDLRTDDGLSVIPIIGTGRIGKTTLAQLAYSDVRVH----------------------NHFDLKAWTCV 198 (385)
Q Consensus 141 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~----------------------~~F~~~~wv~v 198 (385)
-++.|.+++.... -...+.++|..|+||||+|+.+.+...-. .+++ ++++..
T Consensus 23 v~~~L~~~i~~~r-----i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~d-v~eida 96 (824)
T PRK07764 23 VTEPLSTALDSGR-----INHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLD-VTEIDA 96 (824)
T ss_pred HHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCc-EEEecc
Confidence 3445556654322 23567899999999999998886542110 1111 234433
Q ss_pred cCCCCHHHHHHHHHHHhhcCCCC---CccchHHhh--chhhHhhHhhhccCCCCCcEEEEEc-CChhHHhhcC-CCCccc
Q 038448 199 SEDFDIIRVTKSILKSIASDQLV---DDHDLNLLQ--KYNDWTNRSRLFEAGAPGSKIVFTT-RNLGVAEKMG-PLPAYP 271 (385)
Q Consensus 199 s~~~~~~~~~~~il~~l~~~~~~---~~~~~~~l~--~~~~w~~l~~~l~~~~~gs~IivTT-R~~~va~~~~-~~~~~~ 271 (385)
.....+.++ +++...+...... ....+++.. ....++.|+..+..-...+.+|++| ....+...+. ....|.
T Consensus 97 as~~~Vd~i-R~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrSRc~~v~ 175 (824)
T PRK07764 97 ASHGGVDDA-RELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSRTHHYP 175 (824)
T ss_pred cccCCHHHH-HHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhheeEEE
Confidence 222233332 3444333221110 111122222 4456777777776655666666555 4444444333 236789
Q ss_pred CCCCChhhHHhhhhccccCCCCCCCCccHHHHHHHHHHHcCCChHHH
Q 038448 272 LKELSNDDCLSVFSPHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVA 318 (385)
Q Consensus 272 l~~L~~~~a~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~c~glPLAi 318 (385)
+..++.++....+.+.+ ...... --......|++.++|.+..+
T Consensus 176 F~~l~~~~l~~~L~~il-~~EGv~---id~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 176 FRLVPPEVMRGYLERIC-AQEGVP---VEPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred eeCCCHHHHHHHHHHHH-HHcCCC---CCHHHHHHHHHHcCCCHHHH
Confidence 99999988877776543 111111 11345567888899977433
No 76
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.03 E-value=0.0047 Score=60.87 Aligned_cols=147 Identities=14% Similarity=0.116 Sum_probs=78.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcccccccccc--ceEEEEecCCCCHHHHHHHHHHHhh------------cCCCCCccc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFD--LKAWTCVSEDFDIIRVTKSILKSIA------------SDQLVDDHD 225 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~~~~~il~~l~------------~~~~~~~~~ 225 (385)
..-+.|+|.+|+|||+|++.+.+. +...+. .+++++... +...+...+. ..+.-..++
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~v~yi~~~~------~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDD 219 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNY--ILEKNPNAKVVYVTSEK------FTNDFVNALRNNTMEEFKEKYRSVDVLLIDD 219 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEEEHHH------HHHHHHHHHHcCcHHHHHHHHhcCCEEEEeh
Confidence 456889999999999999999986 444432 344565332 2222222221 111101222
Q ss_pred hHHhhchhhHh-hHhhhccC-CCCCcEEEEEcCChh---------HHhhcCCCCcccCCCCChhhHHhhhhccccCCCCC
Q 038448 226 LNLLQKYNDWT-NRSRLFEA-GAPGSKIVFTTRNLG---------VAEKMGPLPAYPLKELSNDDCLSVFSPHSLGEKDF 294 (385)
Q Consensus 226 ~~~l~~~~~w~-~l~~~l~~-~~~gs~IivTTR~~~---------va~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~ 294 (385)
++.+...+.+. .+...+.. ...|..||+||.... +...+.....+.+.+++.++-..++.+.+-.. ..
T Consensus 220 i~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~-~~ 298 (450)
T PRK00149 220 IQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEE-GI 298 (450)
T ss_pred hhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHc-CC
Confidence 33222222222 22222211 123456888876431 22233334568899999999999998876321 11
Q ss_pred CCCccHHHHHHHHHHHcCCChHHH
Q 038448 295 STHPSLKEIGEKIVKKCNGLPLVA 318 (385)
Q Consensus 295 ~~~~~l~~~~~~i~~~c~glPLAi 318 (385)
..+ .++..-|++.+.|..-.+
T Consensus 299 ~l~---~e~l~~ia~~~~~~~R~l 319 (450)
T PRK00149 299 DLP---DEVLEFIAKNITSNVREL 319 (450)
T ss_pred CCC---HHHHHHHHcCcCCCHHHH
Confidence 112 345666777777665443
No 77
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.00 E-value=0.0071 Score=59.27 Aligned_cols=143 Identities=13% Similarity=0.075 Sum_probs=74.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccc-c-ceEEEEecCCCCHHHHHHHHHHHhhcCC-----------C--CCcc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSDVRVHNHF-D-LKAWTCVSEDFDIIRVTKSILKSIASDQ-----------L--VDDH 224 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F-~-~~~wv~vs~~~~~~~~~~~il~~l~~~~-----------~--~~~~ 224 (385)
..-+.|+|.+|+|||+|++.+.+. +.... . .++|++.. +++..+...+.... . --.+
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~--l~~~~~~~~v~yi~~~------~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlID 201 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITSE------KFLNDLVDSMKEGKLNEFREKYRKKVDVLLID 201 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEEHH------HHHHHHHHHHhcccHHHHHHHHHhcCCEEEEe
Confidence 345899999999999999999985 33332 2 34566532 33444433332110 1 0112
Q ss_pred chHHhhchhhHh-hHhhhccC-CCCCcEEEEEcC-ChhHHh--------hcCCCCcccCCCCChhhHHhhhhccccCCCC
Q 038448 225 DLNLLQKYNDWT-NRSRLFEA-GAPGSKIVFTTR-NLGVAE--------KMGPLPAYPLKELSNDDCLSVFSPHSLGEKD 293 (385)
Q Consensus 225 ~~~~l~~~~~w~-~l~~~l~~-~~~gs~IivTTR-~~~va~--------~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~ 293 (385)
+++.+.+...+. .+...+.. ...|..||+||. .+.-.. .+.....+.+++.+.+.-..++.+.+-.. .
T Consensus 202 Di~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~-~ 280 (440)
T PRK14088 202 DVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIE-H 280 (440)
T ss_pred chhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhc-C
Confidence 222221222121 22222211 123456888874 332221 22333467899999998888888775321 1
Q ss_pred CCCCccHHHHHHHHHHHcCCC
Q 038448 294 FSTHPSLKEIGEKIVKKCNGL 314 (385)
Q Consensus 294 ~~~~~~l~~~~~~i~~~c~gl 314 (385)
...+ .++..-|++.+.|.
T Consensus 281 ~~l~---~ev~~~Ia~~~~~~ 298 (440)
T PRK14088 281 GELP---EEVLNFVAENVDDN 298 (440)
T ss_pred CCCC---HHHHHHHHhccccC
Confidence 1111 34566666666654
No 78
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.98 E-value=0.0038 Score=61.09 Aligned_cols=121 Identities=18% Similarity=0.163 Sum_probs=64.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCCCCHHHHHHHHHHHhhcCC---------CCCccchHHhh
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSEDFDIIRVTKSILKSIASDQ---------LVDDHDLNLLQ 230 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~---------~~~~~~~~~l~ 230 (385)
..-+.|+|++|+|||+|++.+.+. +...-..+++++. ..+...+...+.... ..+.--+++++
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~--l~~~~~~v~yi~~------~~f~~~~~~~l~~~~~~~f~~~~~~~dvLiIDDiq 212 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHA--LRESGGKILYVRS------ELFTEHLVSAIRSGEMQRFRQFYRNVDALFIEDIE 212 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHH--HHHcCCCEEEeeH------HHHHHHHHHHHhcchHHHHHHHcccCCEEEEcchh
Confidence 456789999999999999999985 3222233455543 223333333322110 00111122222
Q ss_pred ---chhhHh-hHhhhccC-CCCCcEEEEEcCCh---------hHHhhcCCCCcccCCCCChhhHHhhhhccc
Q 038448 231 ---KYNDWT-NRSRLFEA-GAPGSKIVFTTRNL---------GVAEKMGPLPAYPLKELSNDDCLSVFSPHS 288 (385)
Q Consensus 231 ---~~~~w~-~l~~~l~~-~~~gs~IivTTR~~---------~va~~~~~~~~~~l~~L~~~~a~~Lf~~~a 288 (385)
....+. .+...+.. ...|..||+||... .+...+.....+.+.+++.++-..++.+++
T Consensus 213 ~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~ 284 (445)
T PRK12422 213 VFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKA 284 (445)
T ss_pred hhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHH
Confidence 211221 22222221 12355788888542 222233334578899999999988888766
No 79
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.96 E-value=0.03 Score=56.67 Aligned_cols=161 Identities=13% Similarity=0.069 Sum_probs=85.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcccccccc-----c--------------cceEEEEecCCCCHHHHHHHHHHHhhcCCC
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSDVRVHNH-----F--------------DLKAWTCVSEDFDIIRVTKSILKSIASDQL 220 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-----F--------------~~~~wv~vs~~~~~~~~~~~il~~l~~~~~ 220 (385)
...+.++|+.|+||||+|+.+.+..--... + .-.+++..+....+.. .+.|.+.+.....
T Consensus 38 ~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~eId~a~~~~Id~-iR~L~~~~~~~p~ 116 (624)
T PRK14959 38 APAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVEIDGASNRGIDD-AKRLKEAIGYAPM 116 (624)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEEEecccccCHHH-HHHHHHHHHhhhh
Confidence 467889999999999999888764211100 0 1133443322222322 3334333322111
Q ss_pred ---CCccchHHhh--chhhHhhHhhhccCCCCCcEEEEEcCC-hhHHhhcC-CCCcccCCCCChhhHHhhhhccccCCCC
Q 038448 221 ---VDDHDLNLLQ--KYNDWTNRSRLFEAGAPGSKIVFTTRN-LGVAEKMG-PLPAYPLKELSNDDCLSVFSPHSLGEKD 293 (385)
Q Consensus 221 ---~~~~~~~~l~--~~~~w~~l~~~l~~~~~gs~IivTTR~-~~va~~~~-~~~~~~l~~L~~~~a~~Lf~~~a~~~~~ 293 (385)
...-.+++.+ ....++.+...+........+|++|.+ ..+...+. ....+++.+++.++....+...+....
T Consensus 117 ~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~eg- 195 (624)
T PRK14959 117 EGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREG- 195 (624)
T ss_pred cCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcC-
Confidence 0111122222 334456666666543345556665544 44443322 225689999999998887776543221
Q ss_pred CCCCccHHHHHHHHHHHcCCC-hHHHHHHHHHh
Q 038448 294 FSTHPSLKEIGEKIVKKCNGL-PLVAKSLGGLL 325 (385)
Q Consensus 294 ~~~~~~l~~~~~~i~~~c~gl-PLAi~~~~~~L 325 (385)
... -.+.+..|++.++|. -.|+..+..++
T Consensus 196 i~i---d~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 196 VDY---DPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred CCC---CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 111 135677788899985 46777766544
No 80
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=96.93 E-value=0.018 Score=58.65 Aligned_cols=170 Identities=11% Similarity=0.063 Sum_probs=87.9
Q ss_pred hHHHHHHHHhcCCCCCCCCceEEEEEcCCCCcHHHHHHHHhcccccc-------------------ccccceEEEEecCC
Q 038448 141 EKEETVKLLLRDDLRTDDGLSVIPIIGTGRIGKTTLAQLAYSDVRVH-------------------NHFDLKAWTCVSED 201 (385)
Q Consensus 141 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-------------------~~F~~~~wv~vs~~ 201 (385)
-+..|.+++..+. -...+.++|..|+||||+|+.+.....-. ..|...+.+..+..
T Consensus 24 vv~~L~~ai~~~r-----l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEidaAs~ 98 (709)
T PRK08691 24 VVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEIDAASN 98 (709)
T ss_pred HHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEEecccc
Confidence 3445556654322 23578999999999999998876531110 11212234443333
Q ss_pred CCHHHHHHHHHHHhhcCCC---CCccchHHhh--chhhHhhHhhhccCCCCCcEEEEEcCCh-hHHhhc-CCCCcccCCC
Q 038448 202 FDIIRVTKSILKSIASDQL---VDDHDLNLLQ--KYNDWTNRSRLFEAGAPGSKIVFTTRNL-GVAEKM-GPLPAYPLKE 274 (385)
Q Consensus 202 ~~~~~~~~~il~~l~~~~~---~~~~~~~~l~--~~~~w~~l~~~l~~~~~gs~IivTTR~~-~va~~~-~~~~~~~l~~ 274 (385)
..+ +.+++++........ ...-.+++.. .....+.+...+......+++|++|.+. .+...+ +....+.+.+
T Consensus 99 ~gV-d~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrSRC~~f~f~~ 177 (709)
T PRK08691 99 TGI-DNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRN 177 (709)
T ss_pred CCH-HHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHHHHhhhhcCC
Confidence 333 334555554321110 0011111111 2233445555554434456677666543 222221 1224578889
Q ss_pred CChhhHHhhhhccccCCCCCCCCccHHHHHHHHHHHcCCChHHHHH
Q 038448 275 LSNDDCLSVFSPHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVAKS 320 (385)
Q Consensus 275 L~~~~a~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~c~glPLAi~~ 320 (385)
++.++....+.+.+-.. ... --......|++.++|.+.-+..
T Consensus 178 Ls~eeI~~~L~~Il~kE-gi~---id~eAL~~Ia~~A~GslRdAln 219 (709)
T PRK08691 178 MTAQQVADHLAHVLDSE-KIA---YEPPALQLLGRAAAGSMRDALS 219 (709)
T ss_pred CCHHHHHHHHHHHHHHc-CCC---cCHHHHHHHHHHhCCCHHHHHH
Confidence 99999888777654221 111 1235667899999988744433
No 81
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.91 E-value=0.0042 Score=60.34 Aligned_cols=147 Identities=15% Similarity=0.140 Sum_probs=77.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccc--cceEEEEecCCCCHHHHHHHHHHHhhcC------------CCCCccc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSDVRVHNHF--DLKAWTCVSEDFDIIRVTKSILKSIASD------------QLVDDHD 225 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~il~~l~~~------------~~~~~~~ 225 (385)
...+.|+|.+|+|||+|++.+++. +.... ..+++++.. ++...+...+... +.-..++
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~--l~~~~~~~~v~yi~~~------~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDD 207 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNE--ILENNPNAKVVYVSSE------KFTNDFVNALRNNKMEEFKEKYRSVDLLLIDD 207 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HHHhCCCCcEEEEEHH------HHHHHHHHHHHcCCHHHHHHHHHhCCEEEEeh
Confidence 356889999999999999999985 33332 234566532 2222333222211 1001222
Q ss_pred hHHhhchhhHh-hHhhhccC-CCCCcEEEEEcCCh-hH--------HhhcCCCCcccCCCCChhhHHhhhhccccCCCCC
Q 038448 226 LNLLQKYNDWT-NRSRLFEA-GAPGSKIVFTTRNL-GV--------AEKMGPLPAYPLKELSNDDCLSVFSPHSLGEKDF 294 (385)
Q Consensus 226 ~~~l~~~~~w~-~l~~~l~~-~~~gs~IivTTR~~-~v--------a~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~ 294 (385)
++.+...+.+. .+...+.. ...|..+|+||... .- ...+.....+.+.+.+.++-..++.+.+-... .
T Consensus 208 i~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~-~ 286 (405)
T TIGR00362 208 IQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEG-L 286 (405)
T ss_pred hhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcC-C
Confidence 22222222222 23222221 12355688877642 21 12222234678899999998888887763321 1
Q ss_pred CCCccHHHHHHHHHHHcCCChHHH
Q 038448 295 STHPSLKEIGEKIVKKCNGLPLVA 318 (385)
Q Consensus 295 ~~~~~l~~~~~~i~~~c~glPLAi 318 (385)
..+ .++..-|++.+.|.+-.+
T Consensus 287 ~l~---~e~l~~ia~~~~~~~r~l 307 (405)
T TIGR00362 287 ELP---DEVLEFIAKNIRSNVREL 307 (405)
T ss_pred CCC---HHHHHHHHHhcCCCHHHH
Confidence 111 456667777777765443
No 82
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=96.91 E-value=0.014 Score=58.76 Aligned_cols=158 Identities=15% Similarity=0.148 Sum_probs=84.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccc-------------------cccceEEEEecCCCCHHHHHHHHHHHhhcCCC
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSDVRVHN-------------------HFDLKAWTCVSEDFDIIRVTKSILKSIASDQL 220 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-------------------~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~ 220 (385)
.+.+.++|+.|+||||+|+.+.....-.. .....+++..+....+.. ++.+...+.....
T Consensus 38 ~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~DiieIdaas~igVd~-IReIi~~~~~~P~ 116 (605)
T PRK05896 38 THAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIVELDAASNNGVDE-IRNIIDNINYLPT 116 (605)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCceEEeccccccCHHH-HHHHHHHHHhchh
Confidence 36788999999999999988765311000 001234444333333333 3445444432221
Q ss_pred C------CccchHHhhchhhHhhHhhhccCCCCCcEEEEEc-CChhHHhhc-CCCCcccCCCCChhhHHhhhhccccCCC
Q 038448 221 V------DDHDLNLLQKYNDWTNRSRLFEAGAPGSKIVFTT-RNLGVAEKM-GPLPAYPLKELSNDDCLSVFSPHSLGEK 292 (385)
Q Consensus 221 ~------~~~~~~~l~~~~~w~~l~~~l~~~~~gs~IivTT-R~~~va~~~-~~~~~~~l~~L~~~~a~~Lf~~~a~~~~ 292 (385)
. ..++.+.+ ....++.+...+......+.+|++| ....+...+ +....+++.+++.++....+...+-...
T Consensus 117 ~~~~KVIIIDEad~L-t~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~keg 195 (605)
T PRK05896 117 TFKYKVYIIDEAHML-STSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEK 195 (605)
T ss_pred hCCcEEEEEechHhC-CHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcC
Confidence 0 01111111 3445667777665544455555544 433443322 2235789999999998877776542211
Q ss_pred CCCCCccHHHHHHHHHHHcCCCh-HHHHHHHH
Q 038448 293 DFSTHPSLKEIGEKIVKKCNGLP-LVAKSLGG 323 (385)
Q Consensus 293 ~~~~~~~l~~~~~~i~~~c~glP-LAi~~~~~ 323 (385)
...+ .+.+..+++.++|.| .|+..+-.
T Consensus 196 -i~Is---~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 196 -IKIE---DNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred -CCCC---HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 1111 345678899999965 45544444
No 83
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.90 E-value=0.018 Score=54.10 Aligned_cols=154 Identities=11% Similarity=0.070 Sum_probs=86.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcccccc-------------------ccccceEEEEec---CCCCHHHHHHHHHHHhh
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSDVRVH-------------------NHFDLKAWTCVS---EDFDIIRVTKSILKSIA 216 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-------------------~~F~~~~wv~vs---~~~~~~~~~~~il~~l~ 216 (385)
-...+.++|+.|+||||+|..+...---. ...+-..|+.-. +...+ +-.+++.+.+.
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~i-d~iR~l~~~~~ 99 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKV-DQVRELVSFVV 99 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCH-HHHHHHHHHHh
Confidence 34678899999999999997765432100 011223444321 12233 33344555554
Q ss_pred cCCCCC---ccchHHhh--chhhHhhHhhhccCCCCCcEEEEEcCCh-hHHhhcC-CCCcccCCCCChhhHHhhhhcccc
Q 038448 217 SDQLVD---DHDLNLLQ--KYNDWTNRSRLFEAGAPGSKIVFTTRNL-GVAEKMG-PLPAYPLKELSNDDCLSVFSPHSL 289 (385)
Q Consensus 217 ~~~~~~---~~~~~~l~--~~~~w~~l~~~l~~~~~gs~IivTTR~~-~va~~~~-~~~~~~l~~L~~~~a~~Lf~~~a~ 289 (385)
...... .--++... +.+..+.+...+-.-..++.+|+||.+. .+...+. ....+.+.+++.+++...+....
T Consensus 100 ~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~- 178 (328)
T PRK05707 100 QTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQAL- 178 (328)
T ss_pred hccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhc-
Confidence 433211 01112111 4556666776665545577777777765 3333322 23568999999999988886542
Q ss_pred CCCCCCCCccHHHHHHHHHHHcCCChHHHHHH
Q 038448 290 GEKDFSTHPSLKEIGEKIVKKCNGLPLVAKSL 321 (385)
Q Consensus 290 ~~~~~~~~~~l~~~~~~i~~~c~glPLAi~~~ 321 (385)
... ..+.+..++..++|.|+....+
T Consensus 179 ~~~-------~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 179 PES-------DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred ccC-------ChHHHHHHHHHcCCCHHHHHHH
Confidence 111 1233567789999999755443
No 84
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=96.83 E-value=0.022 Score=57.76 Aligned_cols=173 Identities=14% Similarity=0.093 Sum_probs=93.4
Q ss_pred hhhHHHHHHHHhcCCCCCCCCceEEEEEcCCCCcHHHHHHHHhcccccccc------------------------ccceE
Q 038448 139 DKEKEETVKLLLRDDLRTDDGLSVIPIIGTGRIGKTTLAQLAYSDVRVHNH------------------------FDLKA 194 (385)
Q Consensus 139 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~------------------------F~~~~ 194 (385)
+.-++.|.+++..+. -..-+.++|+.|+||||+|+.+.+....... ..-++
T Consensus 30 ~~~v~~L~~~~~~gr-----i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g~h~Dv~ 104 (598)
T PRK09111 30 EAMVRTLTNAFETGR-----IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEGRHVDVL 104 (598)
T ss_pred HHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcCCCCceE
Confidence 444555666664332 2457889999999999999888653211100 01123
Q ss_pred EEEecCCCCHHHHHHHHHHHhhcCCCC------CccchHHhhchhhHhhHhhhccCCCCCcEEEEEc-CChhHHhhcC-C
Q 038448 195 WTCVSEDFDIIRVTKSILKSIASDQLV------DDHDLNLLQKYNDWTNRSRLFEAGAPGSKIVFTT-RNLGVAEKMG-P 266 (385)
Q Consensus 195 wv~vs~~~~~~~~~~~il~~l~~~~~~------~~~~~~~l~~~~~w~~l~~~l~~~~~gs~IivTT-R~~~va~~~~-~ 266 (385)
++.......+.+ +++|+..+...... ..+..+.+ +....+.+...+..-...+.+|++| ....+...+. .
T Consensus 105 e~~a~s~~gvd~-IReIie~~~~~P~~a~~KVvIIDEad~L-s~~a~naLLKtLEePp~~~~fIl~tte~~kll~tI~SR 182 (598)
T PRK09111 105 EMDAASHTGVDD-IREIIESVRYRPVSARYKVYIIDEVHML-STAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVLSR 182 (598)
T ss_pred EecccccCCHHH-HHHHHHHHHhchhcCCcEEEEEEChHhC-CHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHHHHhh
Confidence 443333333333 44565554322210 01111111 3344566666665545566766544 4444443332 2
Q ss_pred CCcccCCCCChhhHHhhhhccccCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHH
Q 038448 267 LPAYPLKELSNDDCLSVFSPHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVAKSLG 322 (385)
Q Consensus 267 ~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~c~glPLAi~~~~ 322 (385)
...+.+.+++.++....+.+.+-.. .... -.+....|++.++|.+.-+....
T Consensus 183 cq~~~f~~l~~~el~~~L~~i~~ke-gi~i---~~eAl~lIa~~a~Gdlr~al~~L 234 (598)
T PRK09111 183 CQRFDLRRIEADVLAAHLSRIAAKE-GVEV---EDEALALIARAAEGSVRDGLSLL 234 (598)
T ss_pred eeEEEecCCCHHHHHHHHHHHHHHc-CCCC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 2568899999999888777654221 1111 13566788999999886555443
No 85
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=96.83 E-value=0.028 Score=53.59 Aligned_cols=83 Identities=12% Similarity=0.139 Sum_probs=52.3
Q ss_pred chhhHhhHhhhccCCCCCcEEEEEcCChh-HHhhcC-CCCcccCCCCChhhHHhhhhccccCCCCCCCCccHHHHHHHHH
Q 038448 231 KYNDWTNRSRLFEAGAPGSKIVFTTRNLG-VAEKMG-PLPAYPLKELSNDDCLSVFSPHSLGEKDFSTHPSLKEIGEKIV 308 (385)
Q Consensus 231 ~~~~w~~l~~~l~~~~~gs~IivTTR~~~-va~~~~-~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~l~~~~~~i~ 308 (385)
+....+.+...+..-..++.+|++|.+.. +...+. ....+.+.+++.++..+++...... . + ......++
T Consensus 154 ~~~aanaLLK~LEepp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~-----~-~--~~~~~~l~ 225 (365)
T PRK07471 154 NANAANALLKVLEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD-----L-P--DDPRAALA 225 (365)
T ss_pred CHHHHHHHHHHHhcCCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc-----C-C--HHHHHHHH
Confidence 44555666666655445666777776653 332222 2357899999999999988765311 0 1 12226789
Q ss_pred HHcCCChHHHHHH
Q 038448 309 KKCNGLPLVAKSL 321 (385)
Q Consensus 309 ~~c~glPLAi~~~ 321 (385)
..++|.|+....+
T Consensus 226 ~~s~Gsp~~Al~l 238 (365)
T PRK07471 226 ALAEGSVGRALRL 238 (365)
T ss_pred HHcCCCHHHHHHH
Confidence 9999999865444
No 86
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.83 E-value=0.02 Score=57.39 Aligned_cols=170 Identities=11% Similarity=0.067 Sum_probs=87.5
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEcCCCCcHHHHHHHHhcccccc-------------------ccccceEEEEecCCC
Q 038448 142 KEETVKLLLRDDLRTDDGLSVIPIIGTGRIGKTTLAQLAYSDVRVH-------------------NHFDLKAWTCVSEDF 202 (385)
Q Consensus 142 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-------------------~~F~~~~wv~vs~~~ 202 (385)
++.+.+++..+. -...+.++|++|+||||+|+.+.....-. ..|.-.+++..+...
T Consensus 25 ~~~L~~~i~~~~-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~~~~~ 99 (527)
T PRK14969 25 VRALTNALEQQR-----LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDAASNT 99 (527)
T ss_pred HHHHHHHHHcCC-----CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeeccccC
Confidence 344555554322 23567899999999999998886432110 112233445433333
Q ss_pred CHHHHHHHHHHHhhcCCCC---CccchHHhh--chhhHhhHhhhccCCCCCcEEEEEcCC-hhHHhhcC-CCCcccCCCC
Q 038448 203 DIIRVTKSILKSIASDQLV---DDHDLNLLQ--KYNDWTNRSRLFEAGAPGSKIVFTTRN-LGVAEKMG-PLPAYPLKEL 275 (385)
Q Consensus 203 ~~~~~~~~il~~l~~~~~~---~~~~~~~l~--~~~~w~~l~~~l~~~~~gs~IivTTR~-~~va~~~~-~~~~~~l~~L 275 (385)
.+ +.+++++..+...... ..--+++.. .....+.+...+......+.+|++|.+ ..+...+. ....+++.++
T Consensus 100 ~v-d~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~SRc~~~~f~~l 178 (527)
T PRK14969 100 QV-DAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQM 178 (527)
T ss_pred CH-HHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHHHHHHHHhcCCC
Confidence 33 3345555544322210 011112111 233455666666554456666655543 33322111 1256889999
Q ss_pred ChhhHHhhhhccccCCCCCCCCccHHHHHHHHHHHcCCChH-HHHHH
Q 038448 276 SNDDCLSVFSPHSLGEKDFSTHPSLKEIGEKIVKKCNGLPL-VAKSL 321 (385)
Q Consensus 276 ~~~~a~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~c~glPL-Ai~~~ 321 (385)
+.++....+.+.+-. .... .-......|++.++|.+- |+..+
T Consensus 179 ~~~~i~~~L~~il~~-egi~---~~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 179 PPPLIVSHLQHILEQ-ENIP---FDATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred CHHHHHHHHHHHHHH-cCCC---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 999887766654321 1111 113456778889999774 44443
No 87
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=96.80 E-value=0.034 Score=52.74 Aligned_cols=85 Identities=16% Similarity=0.144 Sum_probs=50.0
Q ss_pred chhhHhhHhhhccCCCCCcEEEEEc-CChhHHhhcC-CCCcccCCCCChhhHHhhhhccccCCCCCCCCccHHHHHHHHH
Q 038448 231 KYNDWTNRSRLFEAGAPGSKIVFTT-RNLGVAEKMG-PLPAYPLKELSNDDCLSVFSPHSLGEKDFSTHPSLKEIGEKIV 308 (385)
Q Consensus 231 ~~~~w~~l~~~l~~~~~gs~IivTT-R~~~va~~~~-~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~l~~~~~~i~ 308 (385)
+....+.+...+........+|++| +...+...+. ....+++.+++.++...++..... ..+ -..+....|+
T Consensus 154 ~~~aanaLLk~LEEpp~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~-~~~-----~~~~~~~~i~ 227 (351)
T PRK09112 154 NRNAANAILKTLEEPPARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGS-SQG-----SDGEITEALL 227 (351)
T ss_pred CHHHHHHHHHHHhcCCCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhc-ccC-----CCHHHHHHHH
Confidence 3344455655554433445544444 4333332222 225789999999999998876321 111 1134467899
Q ss_pred HHcCCChHHHHHH
Q 038448 309 KKCNGLPLVAKSL 321 (385)
Q Consensus 309 ~~c~glPLAi~~~ 321 (385)
+.++|.|.....+
T Consensus 228 ~~s~G~pr~Al~l 240 (351)
T PRK09112 228 QRSKGSVRKALLL 240 (351)
T ss_pred HHcCCCHHHHHHH
Confidence 9999999866544
No 88
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.78 E-value=0.012 Score=62.26 Aligned_cols=143 Identities=11% Similarity=0.091 Sum_probs=75.6
Q ss_pred hhhhhHHHHHHHHhcCCCCCCCCceEEEEEcCCCCcHHHHHHHHhcccc---cccc-ccceEE-EEecC-------CCCH
Q 038448 137 EKDKEKEETVKLLLRDDLRTDDGLSVIPIIGTGRIGKTTLAQLAYSDVR---VHNH-FDLKAW-TCVSE-------DFDI 204 (385)
Q Consensus 137 ~~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~---~~~~-F~~~~w-v~vs~-------~~~~ 204 (385)
+++.+...++..|..... .-+.++|.+|+||||+|..+..... +... ....+| +.++. .-..
T Consensus 191 Gr~~ei~~~i~~l~r~~~------~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~ 264 (852)
T TIGR03345 191 GRDDEIRQMIDILLRRRQ------NNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEF 264 (852)
T ss_pred CCHHHHHHHHHHHhcCCc------CceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchHH
Confidence 347778888888865432 3456999999999999998886421 1111 223444 32221 1234
Q ss_pred HHHHHHHHHHhhcCCCCC---ccchHHhh------chhhH-hhHhhhccCCCCCcEEEEEcCChhHHhhcC-------CC
Q 038448 205 IRVTKSILKSIASDQLVD---DHDLNLLQ------KYNDW-TNRSRLFEAGAPGSKIVFTTRNLGVAEKMG-------PL 267 (385)
Q Consensus 205 ~~~~~~il~~l~~~~~~~---~~~~~~l~------~~~~w-~~l~~~l~~~~~gs~IivTTR~~~va~~~~-------~~ 267 (385)
..-++.++..+....... .+.+..+- ...+- +-+++.+.. ..-++|-||...+....+. ..
T Consensus 265 e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~--G~l~~IgaTT~~e~~~~~~~d~AL~rRf 342 (852)
T TIGR03345 265 ENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR--GELRTIAATTWAEYKKYFEKDPALTRRF 342 (852)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhC--CCeEEEEecCHHHHhhhhhccHHHHHhC
Confidence 456667777664322111 12222221 01111 123333321 2245666665433322111 22
Q ss_pred CcccCCCCChhhHHhhhhcc
Q 038448 268 PAYPLKELSNDDCLSVFSPH 287 (385)
Q Consensus 268 ~~~~l~~L~~~~a~~Lf~~~ 287 (385)
..+.+.+++.++...++...
T Consensus 343 ~~i~v~eps~~~~~~iL~~~ 362 (852)
T TIGR03345 343 QVVKVEEPDEETAIRMLRGL 362 (852)
T ss_pred eEEEeCCCCHHHHHHHHHHH
Confidence 57899999999999987543
No 89
>PRK06696 uridine kinase; Validated
Probab=96.77 E-value=0.0021 Score=56.95 Aligned_cols=38 Identities=24% Similarity=0.170 Sum_probs=28.2
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 143 EETVKLLLRDDLRTDDGLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 143 ~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
++|.+.+.... .+...+|+|.|.+|+||||||+.+...
T Consensus 8 ~~la~~~~~~~---~~~~~iI~I~G~sgsGKSTlA~~L~~~ 45 (223)
T PRK06696 8 KELAEHILTLN---LTRPLRVAIDGITASGKTTFADELAEE 45 (223)
T ss_pred HHHHHHHHHhC---CCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 34444444322 246789999999999999999999874
No 90
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.68 E-value=0.0096 Score=57.94 Aligned_cols=125 Identities=12% Similarity=0.169 Sum_probs=63.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecC---CC--CHHHHHHHHHHHhhcCCCC--CccchHHhh-
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSE---DF--DIIRVTKSILKSIASDQLV--DDHDLNLLQ- 230 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~---~~--~~~~~~~~il~~l~~~~~~--~~~~~~~l~- 230 (385)
..+-+.++|++|.|||+||+.+++. ....| +.+..+. .+ .....++.++......... ..++++.+-
T Consensus 216 ~p~gVLL~GPPGTGKT~LAraIA~e--l~~~f---i~V~~seL~~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~ 290 (438)
T PTZ00361 216 PPKGVILYGPPGTGKTLLAKAVANE--TSATF---LRVVGSELIQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGT 290 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHh--hCCCE---EEEecchhhhhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhc
Confidence 3456889999999999999999985 33344 1122111 11 1223344444433222210 112222221
Q ss_pred --------chhh----HhhHhhhccC--CCCCcEEEEEcCChhHHhhc--CC---CCcccCCCCChhhHHhhhhccc
Q 038448 231 --------KYND----WTNRSRLFEA--GAPGSKIVFTTRNLGVAEKM--GP---LPAYPLKELSNDDCLSVFSPHS 288 (385)
Q Consensus 231 --------~~~~----w~~l~~~l~~--~~~gs~IivTTR~~~va~~~--~~---~~~~~l~~L~~~~a~~Lf~~~a 288 (385)
.... ...+...+.. ...+..||.||...+..... .+ ...+.+...+.++..++|..+.
T Consensus 291 kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~ 367 (438)
T PTZ00361 291 KRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHT 367 (438)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHH
Confidence 0001 1112222211 13356788888765544321 11 2457888888888888888654
No 91
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.66 E-value=0.0022 Score=60.25 Aligned_cols=46 Identities=13% Similarity=0.200 Sum_probs=30.9
Q ss_pred hhhHHHHHHHHhcCCCCCCCCceEEEEEcCCCCcHHHHHHHHhccc
Q 038448 139 DKEKEETVKLLLRDDLRTDDGLSVIPIIGTGRIGKTTLAQLAYSDV 184 (385)
Q Consensus 139 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 184 (385)
++.++++++++...........+++.++|++|+||||||..+.+..
T Consensus 57 ~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 57 EEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3344555555543221123356899999999999999999998753
No 92
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.65 E-value=0.041 Score=56.04 Aligned_cols=159 Identities=12% Similarity=0.066 Sum_probs=83.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccc---cc-----------------cceEEEEecCCCCHHHHHHHHHHHhhcCC
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSDVRVHN---HF-----------------DLKAWTCVSEDFDIIRVTKSILKSIASDQ 219 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~---~F-----------------~~~~wv~vs~~~~~~~~~~~il~~l~~~~ 219 (385)
...+.++|..|+||||+|+.+........ .+ ...+.+..+...... .+++|...+....
T Consensus 38 ~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d~~~i~~~~~~~vd-~ir~ii~~~~~~p 116 (585)
T PRK14950 38 AHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVDVIEMDAASHTSVD-DAREIIERVQFRP 116 (585)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCeEEEEeccccCCHH-HHHHHHHHHhhCc
Confidence 35678999999999999998875321100 00 012223322222333 3455555443222
Q ss_pred CC---CccchHHhh--chhhHhhHhhhccCCCCCcEEEEEcCC-hhHHhhcC-CCCcccCCCCChhhHHhhhhccccCCC
Q 038448 220 LV---DDHDLNLLQ--KYNDWTNRSRLFEAGAPGSKIVFTTRN-LGVAEKMG-PLPAYPLKELSNDDCLSVFSPHSLGEK 292 (385)
Q Consensus 220 ~~---~~~~~~~l~--~~~~w~~l~~~l~~~~~gs~IivTTR~-~~va~~~~-~~~~~~l~~L~~~~a~~Lf~~~a~~~~ 292 (385)
.. ..--+++.+ ..+..+.+...+......+.+|++|.+ ..+...+. ....+.+..++.++....+...+....
T Consensus 117 ~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~eg 196 (585)
T PRK14950 117 ALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEG 196 (585)
T ss_pred ccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcC
Confidence 10 001112222 334455666666554456666665543 33333222 224678888988888777766542211
Q ss_pred CCCCCccHHHHHHHHHHHcCCChHHHHHHHH
Q 038448 293 DFSTHPSLKEIGEKIVKKCNGLPLVAKSLGG 323 (385)
Q Consensus 293 ~~~~~~~l~~~~~~i~~~c~glPLAi~~~~~ 323 (385)
... -.+.+..|++.++|.+..+...-.
T Consensus 197 -l~i---~~eal~~La~~s~Gdlr~al~~Le 223 (585)
T PRK14950 197 -INL---EPGALEAIARAATGSMRDAENLLQ 223 (585)
T ss_pred -CCC---CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 111 135677899999998865544433
No 93
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.64 E-value=0.035 Score=54.04 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
-+++.++|++|+||||++..+...
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~ 244 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAAR 244 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 369999999999999988777553
No 94
>PRK08181 transposase; Validated
Probab=96.63 E-value=0.0014 Score=59.61 Aligned_cols=36 Identities=17% Similarity=0.018 Sum_probs=26.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEe
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCV 198 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v 198 (385)
.-+.++|++|+|||.||..+.+. .......+.|+++
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~--a~~~g~~v~f~~~ 142 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLA--LIENGWRVLFTRT 142 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHH--HHHcCCceeeeeH
Confidence 34899999999999999999874 3233334566654
No 95
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=96.61 E-value=0.0096 Score=57.43 Aligned_cols=146 Identities=13% Similarity=0.140 Sum_probs=73.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCC---C--CHHHHHHHHHHHhhcCCCC--CccchHHhh-
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSED---F--DIIRVTKSILKSIASDQLV--DDHDLNLLQ- 230 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~---~--~~~~~~~~il~~l~~~~~~--~~~~~~~l~- 230 (385)
.++-|.++|++|+|||++|+.+++. ....| +.+..+.- + ......+.++.......+. -.++++.+.
T Consensus 164 ~p~gvLL~GppGtGKT~lAkaia~~--~~~~~---i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~ 238 (389)
T PRK03992 164 PPKGVLLYGPPGTGKTLLAKAVAHE--TNATF---IRVVGSELVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAA 238 (389)
T ss_pred CCCceEEECCCCCChHHHHHHHHHH--hCCCE---EEeehHHHhHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhc
Confidence 4567899999999999999999885 22222 11211110 0 1223444444443322211 223333332
Q ss_pred ---------chhhHhhHhhhc---cC--CCCCcEEEEEcCChhHHhh-c-C---CCCcccCCCCChhhHHhhhhccccCC
Q 038448 231 ---------KYNDWTNRSRLF---EA--GAPGSKIVFTTRNLGVAEK-M-G---PLPAYPLKELSNDDCLSVFSPHSLGE 291 (385)
Q Consensus 231 ---------~~~~w~~l~~~l---~~--~~~gs~IivTTR~~~va~~-~-~---~~~~~~l~~L~~~~a~~Lf~~~a~~~ 291 (385)
..+.+..+...+ .. ...+..||.||........ + . -...+.+.+.+.++-.++|..+....
T Consensus 239 ~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~ 318 (389)
T PRK03992 239 KRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKM 318 (389)
T ss_pred ccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccC
Confidence 011122222222 11 1235567777765433221 1 1 12468889999999999988765322
Q ss_pred CCCCCCccHHHHHHHHHHHcCCC
Q 038448 292 KDFSTHPSLKEIGEKIVKKCNGL 314 (385)
Q Consensus 292 ~~~~~~~~l~~~~~~i~~~c~gl 314 (385)
. ....-+ ...+++.+.|.
T Consensus 319 ~-~~~~~~----~~~la~~t~g~ 336 (389)
T PRK03992 319 N-LADDVD----LEELAELTEGA 336 (389)
T ss_pred C-CCCcCC----HHHHHHHcCCC
Confidence 1 111112 34566666664
No 96
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.57 E-value=0.0017 Score=51.82 Aligned_cols=21 Identities=38% Similarity=0.341 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcc
Q 038448 163 IPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 163 i~I~G~gGiGKTtLA~~v~~~ 183 (385)
|.|.|.+|+||||+|+.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999875
No 97
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.055 Score=52.78 Aligned_cols=145 Identities=20% Similarity=0.198 Sum_probs=80.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCC--CCH---HHHHHHHHHHhhcCCCC--CccchHHhh
Q 038448 158 DGLSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSED--FDI---IRVTKSILKSIASDQLV--DDHDLNLLQ 230 (385)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~--~~~---~~~~~~il~~l~~~~~~--~~~~~~~l~ 230 (385)
..+..+.+.|++|+|||+||..+... ..|+.+=-++-... ++. -.-++.+.+...+.... ..++++.|-
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~----S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLi 611 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALS----SDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLL 611 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhh----cCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhh
Confidence 46777889999999999999999764 66875444432111 111 11233444444433321 123333332
Q ss_pred ---------chhhHhhHhhhccCC-CCCcE--EEEEcCChhHHhhcCCC----CcccCCCCCh-hhHHhhhhccccCCCC
Q 038448 231 ---------KYNDWTNRSRLFEAG-APGSK--IVFTTRNLGVAEKMGPL----PAYPLKELSN-DDCLSVFSPHSLGEKD 293 (385)
Q Consensus 231 ---------~~~~w~~l~~~l~~~-~~gs~--IivTTR~~~va~~~~~~----~~~~l~~L~~-~~a~~Lf~~~a~~~~~ 293 (385)
..-....+...+... ..|-| |+-||....+...|+-. ..|++..++. ++..+.++..-
T Consensus 612 D~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~~~n----- 686 (744)
T KOG0741|consen 612 DYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEVLEELN----- 686 (744)
T ss_pred cccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHHHHHHHHcc-----
Confidence 112223333344332 23444 45577778888887632 5688888887 66666665432
Q ss_pred CCCCccHHHHHHHHHHHc
Q 038448 294 FSTHPSLKEIGEKIVKKC 311 (385)
Q Consensus 294 ~~~~~~l~~~~~~i~~~c 311 (385)
...+.+...++.+.+.+|
T Consensus 687 ~fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 687 IFSDDEVRAIAEQLLSKK 704 (744)
T ss_pred CCCcchhHHHHHHHhccc
Confidence 122344566777777777
No 98
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=0.0076 Score=60.62 Aligned_cols=50 Identities=22% Similarity=0.333 Sum_probs=36.7
Q ss_pred hhhHHHHHHHHhcCCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccc
Q 038448 139 DKEKEETVKLLLRDDLRTDDGLSVIPIIGTGRIGKTTLAQLAYSDVRVHNHF 190 (385)
Q Consensus 139 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F 190 (385)
++-++.|++.|.-......-.=.++++||+||+|||+|++.+..- ....|
T Consensus 329 ekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~a--l~Rkf 378 (782)
T COG0466 329 EKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKA--LGRKF 378 (782)
T ss_pred hhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHH--hCCCE
Confidence 677888998885422212233479999999999999999999874 44445
No 99
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.55 E-value=0.0088 Score=55.98 Aligned_cols=134 Identities=12% Similarity=0.095 Sum_probs=65.2
Q ss_pred hhhHHHHHHHHhcCCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCCCCHHHHHHHH----HHH
Q 038448 139 DKEKEETVKLLLRDDLRTDDGLSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSEDFDIIRVTKSI----LKS 214 (385)
Q Consensus 139 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i----l~~ 214 (385)
+..++.+..++..+ .-..++.++|++|+||||+|+.+++. .... ...++.+. ... ..+++. ...
T Consensus 27 ~~~~~~l~~~~~~~-----~~~~~lll~G~~G~GKT~la~~l~~~--~~~~---~~~i~~~~-~~~-~~i~~~l~~~~~~ 94 (316)
T PHA02544 27 AADKETFKSIVKKG-----RIPNMLLHSPSPGTGKTTVAKALCNE--VGAE---VLFVNGSD-CRI-DFVRNRLTRFAST 94 (316)
T ss_pred HHHHHHHHHHHhcC-----CCCeEEEeeCcCCCCHHHHHHHHHHH--hCcc---ceEeccCc-ccH-HHHHHHHHHHHHh
Confidence 44455566666432 23467778999999999999999875 2211 23444443 222 222222 222
Q ss_pred hhcCCCC---CccchHHhhchhhHhhHhhhccCCCCCcEEEEEcCChhH-Hhhc-CCCCcccCCCCChhhHHhhh
Q 038448 215 IASDQLV---DDHDLNLLQKYNDWTNRSRLFEAGAPGSKIVFTTRNLGV-AEKM-GPLPAYPLKELSNDDCLSVF 284 (385)
Q Consensus 215 l~~~~~~---~~~~~~~l~~~~~w~~l~~~l~~~~~gs~IivTTR~~~v-a~~~-~~~~~~~l~~L~~~~a~~Lf 284 (385)
....... ..++.+.+...+....+...+.....++++|+||..... ...+ +....+.+...+.++...++
T Consensus 95 ~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~~p~~~~~~~il 169 (316)
T PHA02544 95 VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVIDFGVPTKEEQIEMM 169 (316)
T ss_pred hcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEEEeCCCCHHHHHHHH
Confidence 1110000 112222221222233344444444567788888865321 1111 11134566666666655443
No 100
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=96.55 E-value=0.0086 Score=52.13 Aligned_cols=57 Identities=18% Similarity=0.321 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCCCCCCCceEEEEEcCCCCcHHHHHHHHhccc
Q 038448 120 HMMAAKIEDRTIRLQEIEKDKEKEETVKLLLRDDLRTDDGLSVIPIIGTGRIGKTTLAQLAYSDV 184 (385)
Q Consensus 120 ~~~~~~i~~~~~~l~~i~~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 184 (385)
+.+.+++..++..++.+.++..... ++- ..+....|+|+|.+|+|||||...+.+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-----~~~~~~~I~iiG~~g~GKStLl~~l~~~~ 65 (204)
T cd01878 9 RLIRERIAKLRRELEKVKKQRELQR---RRR-----KRSGIPTVALVGYTNAGKSTLFNALTGAD 65 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHH---Hhh-----hhcCCCeEEEECCCCCCHHHHHHHHhcch
Confidence 4567777778777777655432222 221 12355789999999999999999988763
No 101
>PRK07667 uridine kinase; Provisional
Probab=96.54 E-value=0.0036 Score=54.13 Aligned_cols=37 Identities=22% Similarity=0.346 Sum_probs=28.5
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 143 EETVKLLLRDDLRTDDGLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 143 ~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
+.|.+.+.... +...+|+|.|.+|+||||+|..+...
T Consensus 4 ~~~~~~~~~~~----~~~~iIgI~G~~gsGKStla~~L~~~ 40 (193)
T PRK07667 4 NELINIMKKHK----ENRFILGIDGLSRSGKTTFVANLKEN 40 (193)
T ss_pred HHHHHHHHhcC----CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45666664432 35589999999999999999998874
No 102
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.53 E-value=0.0018 Score=53.14 Aligned_cols=24 Identities=33% Similarity=0.267 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
..-|.|.|++|+|||||++.+.+.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~ 28 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEK 28 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHH
Confidence 356899999999999999999865
No 103
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.52 E-value=0.033 Score=56.67 Aligned_cols=84 Identities=14% Similarity=0.157 Sum_probs=48.6
Q ss_pred hhHhhHhhhccCCCCCcEEEE-EcCChhHHhhc-CCCCcccCCCCChhhHHhhhhccccCCCCCCCCccHHHHHHHHHHH
Q 038448 233 NDWTNRSRLFEAGAPGSKIVF-TTRNLGVAEKM-GPLPAYPLKELSNDDCLSVFSPHSLGEKDFSTHPSLKEIGEKIVKK 310 (385)
Q Consensus 233 ~~w~~l~~~l~~~~~gs~Iiv-TTR~~~va~~~-~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~ 310 (385)
...+.+...+..-...+.+|+ |++...+...+ .....+++.+++.++....+.+.+-... ... -.+.+..|+..
T Consensus 142 ~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~eg-i~I---~~eal~~La~~ 217 (620)
T PRK14954 142 AAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEG-IQI---DADALQLIARK 217 (620)
T ss_pred HHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcC-CCC---CHHHHHHHHHH
Confidence 445667777665444555554 44444444332 2336789999999887766665432111 111 14567788999
Q ss_pred cCCChH-HHHH
Q 038448 311 CNGLPL-VAKS 320 (385)
Q Consensus 311 c~glPL-Ai~~ 320 (385)
++|.+- |+..
T Consensus 218 s~Gdlr~al~e 228 (620)
T PRK14954 218 AQGSMRDAQSI 228 (620)
T ss_pred hCCCHHHHHHH
Confidence 999554 4443
No 104
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.51 E-value=0.037 Score=53.03 Aligned_cols=167 Identities=10% Similarity=0.131 Sum_probs=83.2
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccc------cccccceE-EEEecCCCCHHHHHHHHHHH
Q 038448 142 KEETVKLLLRDDLRTDDGLSVIPIIGTGRIGKTTLAQLAYSDVRV------HNHFDLKA-WTCVSEDFDIIRVTKSILKS 214 (385)
Q Consensus 142 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------~~~F~~~~-wv~vs~~~~~~~~~~~il~~ 214 (385)
.+.+.+++... .-.+.+.++|++|+||||+|..+.+...- ...|...+ -+......+. +-..+++..
T Consensus 26 ~~~l~~~i~~~-----~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~i~~l~~~ 99 (367)
T PRK14970 26 TNTLLNAIENN-----HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSV-DDIRNLIDQ 99 (367)
T ss_pred HHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCH-HHHHHHHHH
Confidence 44555555332 23468889999999999999988664211 01222111 1221111122 233344444
Q ss_pred hhcCCCC---CccchHHhh--chhhHhhHhhhccCCCCCcEEEEEc-CChhHHhhc-CCCCcccCCCCChhhHHhhhhcc
Q 038448 215 IASDQLV---DDHDLNLLQ--KYNDWTNRSRLFEAGAPGSKIVFTT-RNLGVAEKM-GPLPAYPLKELSNDDCLSVFSPH 287 (385)
Q Consensus 215 l~~~~~~---~~~~~~~l~--~~~~w~~l~~~l~~~~~gs~IivTT-R~~~va~~~-~~~~~~~l~~L~~~~a~~Lf~~~ 287 (385)
+...... ..--+++.+ ....++.+...+......+.+|++| ....+...+ +....+++.+++.++....+...
T Consensus 100 ~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~ 179 (367)
T PRK14970 100 VRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIFDFKRITIKDIKEHLAGI 179 (367)
T ss_pred HhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhcceeEecCCccHHHHHHHHHHH
Confidence 3221110 011112111 2234556655554433445555555 333332221 22256889999999888777765
Q ss_pred ccCCCCCCCCccHHHHHHHHHHHcCCChHHH
Q 038448 288 SLGEKDFSTHPSLKEIGEKIVKKCNGLPLVA 318 (385)
Q Consensus 288 a~~~~~~~~~~~l~~~~~~i~~~c~glPLAi 318 (385)
+...+ ...+ .+....|+..++|.+-.+
T Consensus 180 ~~~~g-~~i~---~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 180 AVKEG-IKFE---DDALHIIAQKADGALRDA 206 (367)
T ss_pred HHHcC-CCCC---HHHHHHHHHhCCCCHHHH
Confidence 53211 1111 356777888888865433
No 105
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.48 E-value=0.0021 Score=55.68 Aligned_cols=22 Identities=41% Similarity=0.403 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 038448 162 VIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
||+|.|.+|+||||+|+.+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~ 22 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQI 22 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999998764
No 106
>PRK08233 hypothetical protein; Provisional
Probab=96.48 E-value=0.0024 Score=54.47 Aligned_cols=24 Identities=29% Similarity=0.289 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
..+|+|.|.+|+||||||..+...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 379999999999999999999864
No 107
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.46 E-value=0.053 Score=53.79 Aligned_cols=158 Identities=11% Similarity=0.064 Sum_probs=80.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcccc-----c--------------cccccceEEEEecCCCCHHHHHHHHHHHhhcCCC
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSDVR-----V--------------HNHFDLKAWTCVSEDFDIIRVTKSILKSIASDQL 220 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~-----~--------------~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~ 220 (385)
...+.++|+.|+||||+|+.+..... . ...|....++..+...... ..+.|...+.....
T Consensus 38 ~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eidaas~~gvd-~ir~I~~~~~~~P~ 116 (486)
T PRK14953 38 SHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDAASNRGID-DIRALRDAVSYTPI 116 (486)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEeCccCCCHH-HHHHHHHHHHhCcc
Confidence 35677899999999999988765311 0 0112223444433322222 22344443322211
Q ss_pred C---CccchHHhh--chhhHhhHhhhccCCCCCcEEEEEc-CChhHHhhc-CCCCcccCCCCChhhHHhhhhccccCCCC
Q 038448 221 V---DDHDLNLLQ--KYNDWTNRSRLFEAGAPGSKIVFTT-RNLGVAEKM-GPLPAYPLKELSNDDCLSVFSPHSLGEKD 293 (385)
Q Consensus 221 ~---~~~~~~~l~--~~~~w~~l~~~l~~~~~gs~IivTT-R~~~va~~~-~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~ 293 (385)
. ..--+++.. .....+.+...+....+...+|++| +...+...+ .....+.+.+++.++....+...+-...
T Consensus 117 ~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~eg- 195 (486)
T PRK14953 117 KGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEK- 195 (486)
T ss_pred cCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcC-
Confidence 0 011111111 2334555666665444455555544 433333222 2225688999999888777766542211
Q ss_pred CCCCccHHHHHHHHHHHcCCChHHHHHHH
Q 038448 294 FSTHPSLKEIGEKIVKKCNGLPLVAKSLG 322 (385)
Q Consensus 294 ~~~~~~l~~~~~~i~~~c~glPLAi~~~~ 322 (385)
.. --.+.+..|+..++|.+-.+....
T Consensus 196 i~---id~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 196 IE---YEEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred CC---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 11 113456778889999765554444
No 108
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.44 E-value=0.0027 Score=55.69 Aligned_cols=25 Identities=36% Similarity=0.460 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
...+|+|.|.+|+|||||+..++..
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 5689999999999999999999874
No 109
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.43 E-value=0.0068 Score=54.97 Aligned_cols=161 Identities=12% Similarity=0.070 Sum_probs=87.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhccccccccccceEE-EEecCCCCHH----H--HHHHHHHHhhcCC----CC-Cccc
Q 038448 158 DGLSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAW-TCVSEDFDII----R--VTKSILKSIASDQ----LV-DDHD 225 (385)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~w-v~vs~~~~~~----~--~~~~il~~l~~~~----~~-~~~~ 225 (385)
........+|++|.|||+-|..+....--.+.|++++. .++|..-... + -+..+........ .. ....
T Consensus 55 ~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Kik~fakl~~~~~~~~~~~~~~fKiiI 134 (346)
T KOG0989|consen 55 RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKIKNFAKLTVLLKRSDGYPCPPFKIII 134 (346)
T ss_pred cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhhcCHHHHhhccccccCCCCCcceEEE
Confidence 35688999999999999988776653222355665543 3444432211 0 0111111110000 00 0111
Q ss_pred hHHhh--chhhHhhHhhhccCCCCCcEEEE-EcCChhHHhhcCCC-CcccCCCCChhhHHhhhhccccCCCCCCCCccHH
Q 038448 226 LNLLQ--KYNDWTNRSRLFEAGAPGSKIVF-TTRNLGVAEKMGPL-PAYPLKELSNDDCLSVFSPHSLGEKDFSTHPSLK 301 (385)
Q Consensus 226 ~~~l~--~~~~w~~l~~~l~~~~~gs~Iiv-TTR~~~va~~~~~~-~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~l~ 301 (385)
+++-. ..+.|..+...+......++.|+ |+--..+...+.+. .-|..++|.+++...-+...+-..+ ... -.
T Consensus 135 lDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~-v~~---d~ 210 (346)
T KOG0989|consen 135 LDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEG-VDI---DD 210 (346)
T ss_pred EechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcCCCcchHHHHHHHHHHHHHhC-CCC---CH
Confidence 22222 56789999888877666777554 44333332222221 4588899999888877776653222 111 24
Q ss_pred HHHHHHHHHcCCC-hHHHHHHH
Q 038448 302 EIGEKIVKKCNGL-PLVAKSLG 322 (385)
Q Consensus 302 ~~~~~i~~~c~gl-PLAi~~~~ 322 (385)
+..+.|++.++|- --|+.++-
T Consensus 211 ~al~~I~~~S~GdLR~Ait~Lq 232 (346)
T KOG0989|consen 211 DALKLIAKISDGDLRRAITTLQ 232 (346)
T ss_pred HHHHHHHHHcCCcHHHHHHHHH
Confidence 5667789999884 44544443
No 110
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.42 E-value=0.062 Score=54.32 Aligned_cols=172 Identities=12% Similarity=0.039 Sum_probs=88.6
Q ss_pred hHHHHHHHHhcCCCCCCCCceEEEEEcCCCCcHHHHHHHHhcccccc----------------------ccccceEEEEe
Q 038448 141 EKEETVKLLLRDDLRTDDGLSVIPIIGTGRIGKTTLAQLAYSDVRVH----------------------NHFDLKAWTCV 198 (385)
Q Consensus 141 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~----------------------~~F~~~~wv~v 198 (385)
-++.|.+++..+ .-...+.++|+.|+||||+|+.+.....-. .++ -++.+..
T Consensus 21 i~~~L~~~i~~~-----r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~-dvieida 94 (584)
T PRK14952 21 VTEPLSSALDAG-----RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSI-DVVELDA 94 (584)
T ss_pred HHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCc-eEEEecc
Confidence 344556666432 223567899999999999998876532100 011 1233333
Q ss_pred cCCCCHHHHHHHHHHHhhcCCCC---CccchHHhh--chhhHhhHhhhccCCCCCcEEEE-EcCChhHHhhcC-CCCccc
Q 038448 199 SEDFDIIRVTKSILKSIASDQLV---DDHDLNLLQ--KYNDWTNRSRLFEAGAPGSKIVF-TTRNLGVAEKMG-PLPAYP 271 (385)
Q Consensus 199 s~~~~~~~~~~~il~~l~~~~~~---~~~~~~~l~--~~~~w~~l~~~l~~~~~gs~Iiv-TTR~~~va~~~~-~~~~~~ 271 (385)
+....+ +-.++|...+...... ..-.+++.. .....+.+...+........+|+ ||....+...+. ....+.
T Consensus 95 as~~gv-d~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~SRc~~~~ 173 (584)
T PRK14952 95 ASHGGV-DDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYP 173 (584)
T ss_pred ccccCH-HHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHHHhceEEE
Confidence 222223 2334444443221110 001111111 34456667777765555666554 544444443332 236789
Q ss_pred CCCCChhhHHhhhhccccCCCCCCCCccHHHHHHHHHHHcCCChH-HHHHHHH
Q 038448 272 LKELSNDDCLSVFSPHSLGEKDFSTHPSLKEIGEKIVKKCNGLPL-VAKSLGG 323 (385)
Q Consensus 272 l~~L~~~~a~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~c~glPL-Ai~~~~~ 323 (385)
+.+++.++....+...+-... ... -......|++.++|.+- |+..+-.
T Consensus 174 F~~l~~~~i~~~L~~i~~~eg-i~i---~~~al~~Ia~~s~GdlR~aln~Ldq 222 (584)
T PRK14952 174 FRLLPPRTMRALIARICEQEG-VVV---DDAVYPLVIRAGGGSPRDTLSVLDQ 222 (584)
T ss_pred eeCCCHHHHHHHHHHHHHHcC-CCC---CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 999999888777765432211 111 13455668888888763 4444433
No 111
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.39 E-value=0.0041 Score=52.85 Aligned_cols=36 Identities=28% Similarity=0.303 Sum_probs=28.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccccceEEE
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWT 196 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 196 (385)
...+|.+.|++|+||||+|+.++.. ....+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~--l~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYER--LKLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH--HHHcCCcEEEE
Confidence 4569999999999999999999875 44455555555
No 112
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.38 E-value=0.0029 Score=51.58 Aligned_cols=22 Identities=32% Similarity=0.351 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 038448 162 VIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
+|.++|++|+||||+|+.+...
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999999753
No 113
>PTZ00301 uridine kinase; Provisional
Probab=96.38 E-value=0.0041 Score=54.47 Aligned_cols=24 Identities=33% Similarity=0.427 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
..+|+|.|.+|+||||||+.+...
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~ 26 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSE 26 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHH
Confidence 479999999999999999988753
No 114
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.04 Score=51.17 Aligned_cols=156 Identities=12% Similarity=0.167 Sum_probs=80.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCC-----C--CHHHHHHHHHHHhhcCCCC--CccchHH
Q 038448 158 DGLSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSED-----F--DIIRVTKSILKSIASDQLV--DDHDLNL 228 (385)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-----~--~~~~~~~~il~~l~~~~~~--~~~~~~~ 228 (385)
..++=|.++|++|.|||-||++|.+. ....| +.|..+ | .-.++.++++.-.....+. ..+.++.
T Consensus 183 ~PPKGVLLYGPPGTGKTLLAkAVA~~--T~AtF-----IrvvgSElVqKYiGEGaRlVRelF~lArekaPsIIFiDEIDA 255 (406)
T COG1222 183 DPPKGVLLYGPPGTGKTLLAKAVANQ--TDATF-----IRVVGSELVQKYIGEGARLVRELFELAREKAPSIIFIDEIDA 255 (406)
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhc--cCceE-----EEeccHHHHHHHhccchHHHHHHHHHHhhcCCeEEEEechhh
Confidence 45677889999999999999999996 44334 433322 1 2235556665555444331 1122222
Q ss_pred hh---------chhhH----hhHhhhccCC--CCCcEEEEEcCChhHHhh--cCC---CCcccCCCCChhhHHhhhhccc
Q 038448 229 LQ---------KYNDW----TNRSRLFEAG--APGSKIVFTTRNLGVAEK--MGP---LPAYPLKELSNDDCLSVFSPHS 288 (385)
Q Consensus 229 l~---------~~~~w----~~l~~~l~~~--~~gs~IivTTR~~~va~~--~~~---~~~~~l~~L~~~~a~~Lf~~~a 288 (385)
+- .+.+. -++...+..+ ...-|||..|...++... +.+ +..+++..-+.+.-.++|.-++
T Consensus 256 Ig~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHt 335 (406)
T COG1222 256 IGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHT 335 (406)
T ss_pred hhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHh
Confidence 22 11111 1222223222 335689988876665432 122 2456666445555567776654
Q ss_pred cCCCCCCCCccHHHHHHHHHHHcCCCh----HHHHHHHHHh
Q 038448 289 LGEKDFSTHPSLKEIGEKIVKKCNGLP----LVAKSLGGLL 325 (385)
Q Consensus 289 ~~~~~~~~~~~l~~~~~~i~~~c~glP----LAi~~~~~~L 325 (385)
-. -+....-++ +.+++.|.|+- .|+.+=|+++
T Consensus 336 rk-M~l~~dvd~----e~la~~~~g~sGAdlkaictEAGm~ 371 (406)
T COG1222 336 RK-MNLADDVDL----ELLARLTEGFSGADLKAICTEAGMF 371 (406)
T ss_pred hh-ccCccCcCH----HHHHHhcCCCchHHHHHHHHHHhHH
Confidence 22 122222233 44666777764 3444445544
No 115
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.33 E-value=0.079 Score=54.11 Aligned_cols=166 Identities=10% Similarity=0.083 Sum_probs=88.8
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEcCCCCcHHHHHHHHhcccc---------------------ccccccceEEEEecC
Q 038448 142 KEETVKLLLRDDLRTDDGLSVIPIIGTGRIGKTTLAQLAYSDVR---------------------VHNHFDLKAWTCVSE 200 (385)
Q Consensus 142 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~---------------------~~~~F~~~~wv~vs~ 200 (385)
++.+.+++..+ .-...+.++|+.|+||||+|+.+..... ...+|+ ...+..+.
T Consensus 26 ~~~L~~~i~~~-----~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n-~~~ld~~~ 99 (614)
T PRK14971 26 TTTLKNAIATN-----KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN-IHELDAAS 99 (614)
T ss_pred HHHHHHHHHcC-----CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc-eEEecccc
Confidence 44555555332 2346688999999999999977654311 112343 22333333
Q ss_pred CCCHHHHHHHHHHHhhcCCCCC---ccchHHhh--chhhHhhHhhhccCCCCCcEEEE-EcCChhHHhhcC-CCCcccCC
Q 038448 201 DFDIIRVTKSILKSIASDQLVD---DHDLNLLQ--KYNDWTNRSRLFEAGAPGSKIVF-TTRNLGVAEKMG-PLPAYPLK 273 (385)
Q Consensus 201 ~~~~~~~~~~il~~l~~~~~~~---~~~~~~l~--~~~~w~~l~~~l~~~~~gs~Iiv-TTR~~~va~~~~-~~~~~~l~ 273 (385)
.... +-+++++.++....... .--+++.. ....++.+...+..-...+.+|+ ||....+...+. ....+++.
T Consensus 100 ~~~v-d~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~SRc~iv~f~ 178 (614)
T PRK14971 100 NNSV-DDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFDFN 178 (614)
T ss_pred cCCH-HHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHhhhheeecC
Confidence 2223 33444554443222100 00011111 34556777777765555666655 445445544332 23678999
Q ss_pred CCChhhHHhhhhccccCCCCCCCCccHHHHHHHHHHHcCCChHHH
Q 038448 274 ELSNDDCLSVFSPHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVA 318 (385)
Q Consensus 274 ~L~~~~a~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~c~glPLAi 318 (385)
+++.++....+...+-... ... -.+.+..|+..++|-+--+
T Consensus 179 ~ls~~ei~~~L~~ia~~eg-i~i---~~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 179 RIQVADIVNHLQYVASKEG-ITA---EPEALNVIAQKADGGMRDA 219 (614)
T ss_pred CCCHHHHHHHHHHHHHHcC-CCC---CHHHHHHHHHHcCCCHHHH
Confidence 9999998877765442211 111 1345677888999866433
No 116
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.33 E-value=0.0051 Score=49.27 Aligned_cols=37 Identities=27% Similarity=0.172 Sum_probs=26.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEec
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVS 199 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs 199 (385)
..+.|+|++|+||||+++.+.... .......++++.+
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~--~~~~~~~~~~~~~ 39 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAREL--GPPGGGVIYIDGE 39 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhcc--CCCCCCEEEECCE
Confidence 578999999999999999998753 2222235555544
No 117
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=96.32 E-value=0.14 Score=48.91 Aligned_cols=54 Identities=19% Similarity=0.207 Sum_probs=43.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcccccccccc-c-eEEEEecCCCCHHHHHHHHHHHhhc
Q 038448 162 VIPIIGTGRIGKTTLAQLAYSDVRVHNHFD-L-KAWTCVSEDFDIIRVTKSILKSIAS 217 (385)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~-~~wv~vs~~~~~~~~~~~il~~l~~ 217 (385)
-+.|+|.+|.|||+.++.+... ++.... . .++|+.-...+...++..|+.+++.
T Consensus 44 n~~iyG~~GTGKT~~~~~v~~~--l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~ 99 (366)
T COG1474 44 NIIIYGPTGTGKTATVKFVMEE--LEESSANVEVVYINCLELRTPYQVLSKILNKLGK 99 (366)
T ss_pred cEEEECCCCCCHhHHHHHHHHH--HHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCC
Confidence 3889999999999999999985 333321 1 6788888888899999999998863
No 118
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.29 E-value=0.0036 Score=54.83 Aligned_cols=25 Identities=36% Similarity=0.365 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.-.+|+|+|++|+|||||++.+...
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 4479999999999999999999864
No 119
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.29 E-value=0.013 Score=52.24 Aligned_cols=55 Identities=20% Similarity=0.130 Sum_probs=38.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcccccccc----ccceEEEEecCCCCHHHHHHHHHHH
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSDVRVHNH----FDLKAWTCVSEDFDIIRVTKSILKS 214 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~~~il~~ 214 (385)
.-.++.|+|.+|+|||+|+.++.-....... -..++|++....++..++ .+++..
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl-~~~~~~ 76 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL-VQIAER 76 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH-HHHHHH
Confidence 4488999999999999999988643222221 357899998877765444 334443
No 120
>PRK06762 hypothetical protein; Provisional
Probab=96.28 E-value=0.0034 Score=52.77 Aligned_cols=23 Identities=35% Similarity=0.406 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+|.|+|++|+||||+|+.+...
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999864
No 121
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.28 E-value=0.0033 Score=44.47 Aligned_cols=22 Identities=32% Similarity=0.441 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 038448 162 VIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
+|.|.|.+|+||||+++.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999988774
No 122
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.26 E-value=0.0081 Score=52.56 Aligned_cols=48 Identities=13% Similarity=0.109 Sum_probs=35.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCCCCHHHHHH
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSEDFDIIRVTK 209 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 209 (385)
.-.++.|+|.+|+|||+++.++... ....-..++|++... ++...+.+
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHHH
Confidence 4589999999999999999988764 333346788998865 55555443
No 123
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.25 E-value=0.024 Score=59.71 Aligned_cols=45 Identities=24% Similarity=0.327 Sum_probs=30.4
Q ss_pred hhhHHHHHHHHhcCCCCCCCCceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 139 DKEKEETVKLLLRDDLRTDDGLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 139 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
+.-++.|.+++..........-.++.++|++|+|||++|+.+.+.
T Consensus 326 ~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~ 370 (775)
T TIGR00763 326 KKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKA 370 (775)
T ss_pred HHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 555666666553221101223358999999999999999999875
No 124
>PRK06547 hypothetical protein; Provisional
Probab=96.24 E-value=0.0066 Score=51.40 Aligned_cols=26 Identities=35% Similarity=0.374 Sum_probs=23.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 158 DGLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
....+|+|.|.+|+||||+|..+...
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45689999999999999999999764
No 125
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.24 E-value=0.051 Score=50.71 Aligned_cols=152 Identities=11% Similarity=0.092 Sum_probs=81.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccc-----ccc-----------ccccceEEEEecCC-C-------CHHHHHHHHHHHh
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSDV-----RVH-----------NHFDLKAWTCVSED-F-------DIIRVTKSILKSI 215 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~-----~~~-----------~~F~~~~wv~vs~~-~-------~~~~~~~~il~~l 215 (385)
...+.++|+.|+||+++|..+.... ... ...+-..|+..... . -..+-.+++...+
T Consensus 26 ~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~~~ 105 (319)
T PRK08769 26 GHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQKL 105 (319)
T ss_pred ceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHHHH
Confidence 4578899999999999997665321 000 01112334421110 0 0123344555544
Q ss_pred hcCCCCCc---cchHHhh--chhhHhhHhhhccCCCCCcEEEEEcCC-hhHHhhcCC-CCcccCCCCChhhHHhhhhccc
Q 038448 216 ASDQLVDD---HDLNLLQ--KYNDWTNRSRLFEAGAPGSKIVFTTRN-LGVAEKMGP-LPAYPLKELSNDDCLSVFSPHS 288 (385)
Q Consensus 216 ~~~~~~~~---~~~~~l~--~~~~w~~l~~~l~~~~~gs~IivTTR~-~~va~~~~~-~~~~~l~~L~~~~a~~Lf~~~a 288 (385)
........ -.++... +...-+.+...+-.-..++.+|++|.+ ..+...+.+ ...+.+.+++.+++...+....
T Consensus 106 ~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~ 185 (319)
T PRK08769 106 ALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG 185 (319)
T ss_pred hhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC
Confidence 43332110 0011111 334445566566554557777776664 344433332 2568899999999887776431
Q ss_pred cCCCCCCCCccHHHHHHHHHHHcCCChHHHHHH
Q 038448 289 LGEKDFSTHPSLKEIGEKIVKKCNGLPLVAKSL 321 (385)
Q Consensus 289 ~~~~~~~~~~~l~~~~~~i~~~c~glPLAi~~~ 321 (385)
. + ...+..++..++|.|+.+..+
T Consensus 186 ---~----~---~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 186 ---V----S---ERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred ---C----C---hHHHHHHHHHcCCCHHHHHHH
Confidence 1 0 223567899999999866543
No 126
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.22 E-value=0.0035 Score=50.10 Aligned_cols=51 Identities=24% Similarity=0.048 Sum_probs=32.7
Q ss_pred EEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCC-----CCHHHHHHHHHHHhhcC
Q 038448 163 IPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSED-----FDIIRVTKSILKSIASD 218 (385)
Q Consensus 163 i~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-----~~~~~~~~~il~~l~~~ 218 (385)
|.|+|++|+||||+|+.+.+.. ..+ .+.++.+.- .+....+..++.+....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l--~~~---~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~ 56 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL--GFP---FIEIDGSELISSYAGDSEQKIRDFFKKAKKS 56 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT--TSE---EEEEETTHHHTSSTTHHHHHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc--ccc---ccccccccccccccccccccccccccccccc
Confidence 5789999999999999999863 222 244443321 23455666666665443
No 127
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.22 E-value=0.03 Score=56.46 Aligned_cols=45 Identities=20% Similarity=0.313 Sum_probs=33.4
Q ss_pred hhhHHHHHHHHhcCCCCCCCCceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 139 DKEKEETVKLLLRDDLRTDDGLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 139 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
++-++.|++++.-....++-+=++++.+|++|+|||.+|+.+..-
T Consensus 417 ~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~A 461 (906)
T KOG2004|consen 417 EDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARA 461 (906)
T ss_pred HHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHH
Confidence 555677777775432213345589999999999999999999874
No 128
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.19 E-value=0.0058 Score=54.40 Aligned_cols=26 Identities=27% Similarity=0.353 Sum_probs=23.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 158 DGLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
+...+|+|.|.+|.|||||++.+..-
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 46799999999999999999988864
No 129
>PRK08116 hypothetical protein; Validated
Probab=96.18 E-value=0.0033 Score=57.36 Aligned_cols=36 Identities=17% Similarity=0.060 Sum_probs=26.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEe
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCV 198 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v 198 (385)
.-+.++|.+|+|||.||..+++. +...-..++++++
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~--l~~~~~~v~~~~~ 150 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANE--LIEKGVPVIFVNF 150 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEH
Confidence 35789999999999999999996 3333334566653
No 130
>PHA00729 NTP-binding motif containing protein
Probab=96.16 E-value=0.0069 Score=53.24 Aligned_cols=25 Identities=36% Similarity=0.372 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
+...|.|+|.+|+||||||..+.+.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 4467899999999999999998774
No 131
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.16 E-value=0.039 Score=57.77 Aligned_cols=141 Identities=13% Similarity=0.179 Sum_probs=75.0
Q ss_pred hhhhHHHHHHHHhcCCCCCCCCceEEEEEcCCCCcHHHHHHHHhccc---cccccc-cceEEE-EecC-----C--CCHH
Q 038448 138 KDKEKEETVKLLLRDDLRTDDGLSVIPIIGTGRIGKTTLAQLAYSDV---RVHNHF-DLKAWT-CVSE-----D--FDII 205 (385)
Q Consensus 138 ~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~---~~~~~F-~~~~wv-~vs~-----~--~~~~ 205 (385)
++.+.+.+++.|.... ..-+.++|++|+|||++|+.+.... .+...+ +..+|. +.+. . -...
T Consensus 187 r~~ei~~~~~~L~~~~------~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e 260 (731)
T TIGR02639 187 REDELERTIQVLCRRK------KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDFE 260 (731)
T ss_pred cHHHHHHHHHHHhcCC------CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchHH
Confidence 4777888888885542 2345799999999999999887642 122222 344443 2111 1 1344
Q ss_pred HHHHHHHHHhhcCCCC--CccchHHhhc--------hhhHhhHhhhccCCCCC-cEEEEEcCChhHHhhc-------CCC
Q 038448 206 RVTKSILKSIASDQLV--DDHDLNLLQK--------YNDWTNRSRLFEAGAPG-SKIVFTTRNLGVAEKM-------GPL 267 (385)
Q Consensus 206 ~~~~~il~~l~~~~~~--~~~~~~~l~~--------~~~w~~l~~~l~~~~~g-s~IivTTR~~~va~~~-------~~~ 267 (385)
.-++.++..+...... ..++++.+-. .+.-+.++..+. .| -++|-+|...+....+ ...
T Consensus 261 ~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~---~g~i~~IgaTt~~e~~~~~~~d~al~rRf 337 (731)
T TIGR02639 261 ERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS---SGKLRCIGSTTYEEYKNHFEKDRALSRRF 337 (731)
T ss_pred HHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh---CCCeEEEEecCHHHHHHHhhhhHHHHHhC
Confidence 5667777766432210 1223333221 111223444332 23 2445444432221111 112
Q ss_pred CcccCCCCChhhHHhhhhcc
Q 038448 268 PAYPLKELSNDDCLSVFSPH 287 (385)
Q Consensus 268 ~~~~l~~L~~~~a~~Lf~~~ 287 (385)
..+.+.+++.++...++...
T Consensus 338 ~~i~v~~p~~~~~~~il~~~ 357 (731)
T TIGR02639 338 QKIDVGEPSIEETVKILKGL 357 (731)
T ss_pred ceEEeCCCCHHHHHHHHHHH
Confidence 46889999999999988854
No 132
>PRK12377 putative replication protein; Provisional
Probab=96.14 E-value=0.0046 Score=55.55 Aligned_cols=37 Identities=16% Similarity=0.028 Sum_probs=28.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEec
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVS 199 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs 199 (385)
..+.++|.+|+|||+||..+.+. +......++++++.
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~--l~~~g~~v~~i~~~ 138 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNR--LLAKGRSVIVVTVP 138 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEEEHH
Confidence 57899999999999999999986 33444456777654
No 133
>PF14516 AAA_35: AAA-like domain
Probab=96.12 E-value=0.2 Score=47.21 Aligned_cols=51 Identities=16% Similarity=0.193 Sum_probs=40.4
Q ss_pred CcccCCCCChhhHHhhhhccccCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHHHHhh
Q 038448 268 PAYPLKELSNDDCLSVFSPHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVAKSLGGLLR 326 (385)
Q Consensus 268 ~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~c~glPLAi~~~~~~L~ 326 (385)
..+.|.+++.+|...|+...-.. .. ....+.|...+||+|.-+..++..+.
T Consensus 194 ~~i~L~~Ft~~ev~~L~~~~~~~-----~~---~~~~~~l~~~tgGhP~Lv~~~~~~l~ 244 (331)
T PF14516_consen 194 QPIELPDFTPEEVQELAQRYGLE-----FS---QEQLEQLMDWTGGHPYLVQKACYLLV 244 (331)
T ss_pred cceeCCCCCHHHHHHHHHhhhcc-----CC---HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 46889999999999998876321 11 22388899999999999999999886
No 134
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.09 E-value=0.005 Score=52.77 Aligned_cols=25 Identities=24% Similarity=0.235 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
+..+|.|+|++|+||||+|+.+...
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~ 26 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEK 26 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999753
No 135
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=96.08 E-value=0.093 Score=52.38 Aligned_cols=157 Identities=11% Similarity=0.046 Sum_probs=81.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcccc---ccc---------------ccc-ceEEEEecCCCCHHHHHHHHHHHhhcCCC
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSDVR---VHN---------------HFD-LKAWTCVSEDFDIIRVTKSILKSIASDQL 220 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~---~~~---------------~F~-~~~wv~vs~~~~~~~~~~~il~~l~~~~~ 220 (385)
...+.++|+.|+||||+|+.+.+..- -.. .+. ..+++..+...... -+++++........
T Consensus 36 ~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~eldaas~~gId-~IRelie~~~~~P~ 114 (535)
T PRK08451 36 AHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMDAASNRGID-DIRELIEQTKYKPS 114 (535)
T ss_pred CeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEeccccccCHH-HHHHHHHHHhhCcc
Confidence 45678999999999999987654310 000 011 12233322222233 33444444321111
Q ss_pred C---CccchHHhh--chhhHhhHhhhccCCCCCcEEEEEcCCh-hHHhhcC-CCCcccCCCCChhhHHhhhhccccCCCC
Q 038448 221 V---DDHDLNLLQ--KYNDWTNRSRLFEAGAPGSKIVFTTRNL-GVAEKMG-PLPAYPLKELSNDDCLSVFSPHSLGEKD 293 (385)
Q Consensus 221 ~---~~~~~~~l~--~~~~w~~l~~~l~~~~~gs~IivTTR~~-~va~~~~-~~~~~~l~~L~~~~a~~Lf~~~a~~~~~ 293 (385)
. ..--+++.+ ..+..+.+...+......+.+|++|.+. .+...+. ....+++.+++.++....+...+-..+
T Consensus 115 ~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EG- 193 (535)
T PRK08451 115 MARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEG- 193 (535)
T ss_pred cCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcC-
Confidence 0 000111111 3445556666665545567777666553 2222221 225789999999988777765442211
Q ss_pred CCCCccHHHHHHHHHHHcCCChHHHHHH
Q 038448 294 FSTHPSLKEIGEKIVKKCNGLPLVAKSL 321 (385)
Q Consensus 294 ~~~~~~l~~~~~~i~~~c~glPLAi~~~ 321 (385)
.. --.+.+..|++.++|.+--+...
T Consensus 194 i~---i~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 194 VS---YEPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred CC---CCHHHHHHHHHHcCCcHHHHHHH
Confidence 11 11456778999999988544443
No 136
>PRK03839 putative kinase; Provisional
Probab=96.07 E-value=0.0046 Score=52.76 Aligned_cols=22 Identities=41% Similarity=0.620 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 038448 162 VIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.|.|+|++|+||||+++.+.+.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999875
No 137
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.05 E-value=0.12 Score=52.55 Aligned_cols=156 Identities=12% Similarity=0.098 Sum_probs=79.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccc--------------------cccceEEEEecCCCCHHHHHHHHHHHhhcCC
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSDVRVHN--------------------HFDLKAWTCVSEDFDIIRVTKSILKSIASDQ 219 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~--------------------~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~ 219 (385)
...+.++|+.|+||||+|+.+.+...-.. +++ .+.+.......+.+ .++|...+....
T Consensus 38 ~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d-~~eid~~s~~~v~~-ir~l~~~~~~~p 115 (576)
T PRK14965 38 AHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVD-VFEIDGASNTGVDD-IRELRENVKYLP 115 (576)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCC-eeeeeccCccCHHH-HHHHHHHHHhcc
Confidence 35678999999999999988765421000 111 12222222223333 345555443222
Q ss_pred CC---CccchHHhh--chhhHhhHhhhccCCCCCcEEEE-EcCChhHHhhcC-CCCcccCCCCChhhHHhhhhccccCCC
Q 038448 220 LV---DDHDLNLLQ--KYNDWTNRSRLFEAGAPGSKIVF-TTRNLGVAEKMG-PLPAYPLKELSNDDCLSVFSPHSLGEK 292 (385)
Q Consensus 220 ~~---~~~~~~~l~--~~~~w~~l~~~l~~~~~gs~Iiv-TTR~~~va~~~~-~~~~~~l~~L~~~~a~~Lf~~~a~~~~ 292 (385)
.. ..--+++.. .....+.+...+......+.+|+ ||....+...+. ....+.+.+++.++....+...+-..
T Consensus 116 ~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~e- 194 (576)
T PRK14965 116 SRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQE- 194 (576)
T ss_pred ccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHh-
Confidence 10 000111111 33445566666655445666665 444444544332 22568888999888776665443111
Q ss_pred CCCCCccHHHHHHHHHHHcCCCh-HHHHHH
Q 038448 293 DFSTHPSLKEIGEKIVKKCNGLP-LVAKSL 321 (385)
Q Consensus 293 ~~~~~~~l~~~~~~i~~~c~glP-LAi~~~ 321 (385)
.... -.+....|++.++|.. .|+..+
T Consensus 195 gi~i---~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 195 GISI---SDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred CCCC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 1111 1345667888888855 444443
No 138
>PRK06526 transposase; Provisional
Probab=96.04 E-value=0.0024 Score=57.65 Aligned_cols=23 Identities=26% Similarity=0.167 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.-+.++|++|+|||+||..+.+.
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~ 121 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIR 121 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHH
Confidence 45899999999999999998764
No 139
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.02 E-value=0.02 Score=52.07 Aligned_cols=50 Identities=18% Similarity=0.088 Sum_probs=38.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCCCCHHHHHHHH
Q 038448 158 DGLSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSEDFDIIRVTKSI 211 (385)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 211 (385)
+.-+++.|.|.+|+|||+++.++... .......++||+..+. ...+.+..
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~--~~~~ge~vlyvs~~e~--~~~l~~~~ 70 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYE--GAREGEPVLYVSTEES--PEELLENA 70 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHH--HHhcCCcEEEEEecCC--HHHHHHHH
Confidence 45589999999999999999888775 4455888999998874 44444443
No 140
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.99 E-value=0.006 Score=53.06 Aligned_cols=26 Identities=31% Similarity=0.374 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 158 DGLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
..+.+|+|.|.+|+||||+|+.++..
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~ 31 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQ 31 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHH
Confidence 45689999999999999999999875
No 141
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.94 E-value=0.24 Score=51.88 Aligned_cols=143 Identities=15% Similarity=0.183 Sum_probs=74.3
Q ss_pred hhhhHHHHHHHHhcCCCCCCCCceEEEEEcCCCCcHHHHHHHHhccc---ccccc-ccceEEEE-ecC-----C--CCHH
Q 038448 138 KDKEKEETVKLLLRDDLRTDDGLSVIPIIGTGRIGKTTLAQLAYSDV---RVHNH-FDLKAWTC-VSE-----D--FDII 205 (385)
Q Consensus 138 ~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~---~~~~~-F~~~~wv~-vs~-----~--~~~~ 205 (385)
++.+.+.+++.|..... .-+.++|.+|+|||++|+.+.... .+... .++.+|.. .+. . -+..
T Consensus 191 R~~ei~~~i~iL~r~~~------~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~e 264 (758)
T PRK11034 191 REKELERAIQVLCRRRK------NNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFE 264 (758)
T ss_pred CCHHHHHHHHHHhccCC------CCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhhHH
Confidence 38888999998876322 334689999999999999987642 11111 24555532 111 1 1234
Q ss_pred HHHHHHHHHhhcCCCC--CccchHHhh-------chhhHhhHhhhccCCCCCcEEEEEcCChhHHhhcC-------CCCc
Q 038448 206 RVTKSILKSIASDQLV--DDHDLNLLQ-------KYNDWTNRSRLFEAGAPGSKIVFTTRNLGVAEKMG-------PLPA 269 (385)
Q Consensus 206 ~~~~~il~~l~~~~~~--~~~~~~~l~-------~~~~w~~l~~~l~~~~~gs~IivTTR~~~va~~~~-------~~~~ 269 (385)
.-++.++..+...... ..++++.+- ...+...+..++.. ...-++|-+|..++....+. ....
T Consensus 265 ~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~-~g~i~vIgATt~~E~~~~~~~D~AL~rRFq~ 343 (758)
T PRK11034 265 KRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGSTTYQEFSNIFEKDRALARRFQK 343 (758)
T ss_pred HHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh-CCCeEEEecCChHHHHHHhhccHHHHhhCcE
Confidence 4455666555432211 123333331 11122222222222 12234555554444322111 1246
Q ss_pred ccCCCCChhhHHhhhhcc
Q 038448 270 YPLKELSNDDCLSVFSPH 287 (385)
Q Consensus 270 ~~l~~L~~~~a~~Lf~~~ 287 (385)
+.+.+++.++...++...
T Consensus 344 I~v~ePs~~~~~~IL~~~ 361 (758)
T PRK11034 344 IDITEPSIEETVQIINGL 361 (758)
T ss_pred EEeCCCCHHHHHHHHHHH
Confidence 888899999988888754
No 142
>PRK04040 adenylate kinase; Provisional
Probab=95.94 E-value=0.0062 Score=52.42 Aligned_cols=23 Identities=30% Similarity=0.458 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+|.|+|++|+||||+++.+...
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~ 25 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEK 25 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 68999999999999999999774
No 143
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.92 E-value=0.013 Score=53.89 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=21.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhc
Q 038448 158 DGLSVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
..+.+|+|.|..|+||||+|+.+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999977644
No 144
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.92 E-value=0.12 Score=52.86 Aligned_cols=155 Identities=11% Similarity=0.069 Sum_probs=79.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccc---------------------cceEEEEecCCCCHHHHHHHHHHHhhcCC
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHNHF---------------------DLKAWTCVSEDFDIIRVTKSILKSIASDQ 219 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F---------------------~~~~wv~vs~~~~~~~~~~~il~~l~~~~ 219 (385)
..+.++|..|+||||+|+.+....--.... ...+.+....... .+-+++++..+....
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~D~~ei~~~~~~~-vd~IReii~~a~~~p 117 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNALDVIEIDAASNTG-VDNIRELIERAQFAP 117 (620)
T ss_pred ceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCccEEEEeccccCC-HHHHHHHHHHHhhCh
Confidence 567899999999999998886642110000 0112232222222 234455555543221
Q ss_pred CC---CccchHHhh--chhhHhhHhhhccCCCCCcEEEEEcCC-hhHHhhcC-CCCcccCCCCChhhHHhhhhccccCCC
Q 038448 220 LV---DDHDLNLLQ--KYNDWTNRSRLFEAGAPGSKIVFTTRN-LGVAEKMG-PLPAYPLKELSNDDCLSVFSPHSLGEK 292 (385)
Q Consensus 220 ~~---~~~~~~~l~--~~~~w~~l~~~l~~~~~gs~IivTTR~-~~va~~~~-~~~~~~l~~L~~~~a~~Lf~~~a~~~~ 292 (385)
.. ..--+++.. ....++.+...+..-...+.+|++|.+ ..+...+. ....+.+..++.++....+...+-...
T Consensus 118 ~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~keg 197 (620)
T PRK14948 118 VQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKES 197 (620)
T ss_pred hcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhC
Confidence 10 001111111 344566677666654445555554443 33333222 225577888888887766665432211
Q ss_pred CCCCCccHHHHHHHHHHHcCCChHHHHH
Q 038448 293 DFSTHPSLKEIGEKIVKKCNGLPLVAKS 320 (385)
Q Consensus 293 ~~~~~~~l~~~~~~i~~~c~glPLAi~~ 320 (385)
.... .+.+..|++.++|.+..+..
T Consensus 198 -i~is---~~al~~La~~s~G~lr~A~~ 221 (620)
T PRK14948 198 -IEIE---PEALTLVAQRSQGGLRDAES 221 (620)
T ss_pred -CCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 1111 34577889999997754443
No 145
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=95.91 E-value=0.13 Score=53.08 Aligned_cols=155 Identities=12% Similarity=0.099 Sum_probs=80.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccc-----------------cccceEEEEecCCCCHHHHHHHHHHHhhcCCCC-
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSDVRVHN-----------------HFDLKAWTCVSEDFDIIRVTKSILKSIASDQLV- 221 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-----------------~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~- 221 (385)
...+.++|+.|+||||+|+.+....--.. +++ ++++........ +-++++...+......
T Consensus 40 ~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~D-vieidaasn~~v-d~IReLie~~~~~P~~g 117 (725)
T PRK07133 40 SHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLD-IIEMDAASNNGV-DEIRELIENVKNLPTQS 117 (725)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCc-EEEEeccccCCH-HHHHHHHHHHHhchhcC
Confidence 46678999999999999988764310000 111 122322211222 2244555544322210
Q ss_pred -----CccchHHhhchhhHhhHhhhccCCCCCcEEE-EEcCChhHHhhcC-CCCcccCCCCChhhHHhhhhccccCCCCC
Q 038448 222 -----DDHDLNLLQKYNDWTNRSRLFEAGAPGSKIV-FTTRNLGVAEKMG-PLPAYPLKELSNDDCLSVFSPHSLGEKDF 294 (385)
Q Consensus 222 -----~~~~~~~l~~~~~w~~l~~~l~~~~~gs~Ii-vTTR~~~va~~~~-~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~ 294 (385)
..+..+.+ ....+..+...+-.....+.+| +||....+...+. ....+.+.+++.++....+...+-... .
T Consensus 118 ~~KV~IIDEa~~L-T~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~keg-I 195 (725)
T PRK07133 118 KYKIYIIDEVHML-SKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKEN-I 195 (725)
T ss_pred CCEEEEEEChhhC-CHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcC-C
Confidence 01111111 3345666766665444455544 5555445543322 235789999999998777765432111 1
Q ss_pred CCCccHHHHHHHHHHHcCCChH-HHHHH
Q 038448 295 STHPSLKEIGEKIVKKCNGLPL-VAKSL 321 (385)
Q Consensus 295 ~~~~~l~~~~~~i~~~c~glPL-Ai~~~ 321 (385)
. --...+..|++.++|.+- |+..+
T Consensus 196 ~---id~eAl~~LA~lS~GslR~AlslL 220 (725)
T PRK07133 196 S---YEKNALKLIAKLSSGSLRDALSIA 220 (725)
T ss_pred C---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 1 113456778899988664 44433
No 146
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.90 E-value=0.0052 Score=53.34 Aligned_cols=22 Identities=36% Similarity=0.445 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 038448 162 VIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
+|+|.|.+|+|||||++.+..-
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998763
No 147
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.89 E-value=0.017 Score=49.97 Aligned_cols=57 Identities=16% Similarity=0.146 Sum_probs=35.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecC-CCCHHHHHHHHHHHhhcC
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSE-DFDIIRVTKSILKSIASD 218 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~il~~l~~~ 218 (385)
++||.++|+.|+||||.+-++.... +..-..+..++... .....+-++...+.++..
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~--~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp 58 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARL--KLKGKKVALISADTYRIGAVEQLKTYAEILGVP 58 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHH--HHTT--EEEEEESTSSTHHHHHHHHHHHHHTEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHH--hhccccceeecCCCCCccHHHHHHHHHHHhccc
Confidence 4799999999999998777666542 22233455666442 234455566666666543
No 148
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.88 E-value=0.015 Score=47.15 Aligned_cols=42 Identities=21% Similarity=0.121 Sum_probs=28.8
Q ss_pred EEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCCCCHHHHHH
Q 038448 163 IPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSEDFDIIRVTK 209 (385)
Q Consensus 163 i~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 209 (385)
|.++|.+|+|||+||+.++.. ... ...-+.++...+..+++.
T Consensus 2 vlL~G~~G~GKt~l~~~la~~--~~~---~~~~i~~~~~~~~~dl~g 43 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAAL--LGR---PVIRINCSSDTTEEDLIG 43 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHH--HTC---EEEEEE-TTTSTHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHH--hhc---ceEEEEecccccccccee
Confidence 679999999999999999874 211 122356666667666543
No 149
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=95.87 E-value=0.38 Score=44.89 Aligned_cols=150 Identities=9% Similarity=0.068 Sum_probs=84.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc-----cccc-------------ccccceEEEEec---CCCCHHHHHHHHHHHhhc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD-----VRVH-------------NHFDLKAWTCVS---EDFDIIRVTKSILKSIAS 217 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~-----~~~~-------------~~F~~~~wv~vs---~~~~~~~~~~~il~~l~~ 217 (385)
-...+-+.|+.|+||+++|..+..- .... ...+-..|+.-. +...+..+ +++...+..
T Consensus 24 l~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~vdqi-R~l~~~~~~ 102 (319)
T PRK06090 24 IPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSITVEQI-RQCNRLAQE 102 (319)
T ss_pred cceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCCHHHH-HHHHHHHhh
Confidence 3468899999999999999776432 1000 011123344321 22333333 445444433
Q ss_pred CCCCC---ccchHHhh--chhhHhhHhhhccCCCCCcEEEEEcCCh-hHHhhcCC-CCcccCCCCChhhHHhhhhccccC
Q 038448 218 DQLVD---DHDLNLLQ--KYNDWTNRSRLFEAGAPGSKIVFTTRNL-GVAEKMGP-LPAYPLKELSNDDCLSVFSPHSLG 290 (385)
Q Consensus 218 ~~~~~---~~~~~~l~--~~~~w~~l~~~l~~~~~gs~IivTTR~~-~va~~~~~-~~~~~l~~L~~~~a~~Lf~~~a~~ 290 (385)
..... .-.++... +....+.+...+-.-..++.+|++|.+. .+...+.+ -..+.+.+++.++..+.+....
T Consensus 103 ~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~-- 180 (319)
T PRK06090 103 SSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG-- 180 (319)
T ss_pred CcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcC--
Confidence 22110 00111111 5566777777776656667777666554 44444433 3578999999999988776431
Q ss_pred CCCCCCCccHHHHHHHHHHHcCCChHHHHHH
Q 038448 291 EKDFSTHPSLKEIGEKIVKKCNGLPLVAKSL 321 (385)
Q Consensus 291 ~~~~~~~~~l~~~~~~i~~~c~glPLAi~~~ 321 (385)
. . ....++..++|.|+....+
T Consensus 181 -~-----~----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 181 -I-----T----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred -C-----c----hHHHHHHHcCCCHHHHHHH
Confidence 0 1 1346788999999876554
No 150
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=95.86 E-value=0.1 Score=55.57 Aligned_cols=41 Identities=24% Similarity=0.334 Sum_probs=31.1
Q ss_pred hhhhhHHHHHHHHhcCCCCCCCCceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 137 EKDKEKEETVKLLLRDDLRTDDGLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 137 ~~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
+++.+...++..|.... ..-+.++|.+|+|||++|..+...
T Consensus 177 gr~~ei~~~~~~l~r~~------~~n~lL~G~pGvGKT~l~~~la~~ 217 (852)
T TIGR03346 177 GRDEEIRRTIQVLSRRT------KNNPVLIGEPGVGKTAIVEGLAQR 217 (852)
T ss_pred CcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHHH
Confidence 34777888888886532 234558999999999999988764
No 151
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.84 E-value=0.0069 Score=51.58 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.++.|+|++|+|||||++.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998764
No 152
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=95.83 E-value=0.18 Score=49.59 Aligned_cols=155 Identities=13% Similarity=0.088 Sum_probs=78.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccc---------------------cccccceEEEEecCCCCHHHHHHHHHHHhhcC
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSDVRV---------------------HNHFDLKAWTCVSEDFDIIRVTKSILKSIASD 218 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~---------------------~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~ 218 (385)
...+.++|++|+||||+|..+.+..-- ..+++ .+++......... -.+++...+...
T Consensus 39 ~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d-~~~i~g~~~~gid-~ir~i~~~l~~~ 116 (451)
T PRK06305 39 AHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD-VLEIDGASHRGIE-DIRQINETVLFT 116 (451)
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-eEEeeccccCCHH-HHHHHHHHHHhh
Confidence 366889999999999999877543110 01122 2222211122222 233344333221
Q ss_pred CC---C---CccchHHhhchhhHhhHhhhccCCCCCcEEEEEcCC-hhHHhhcC-CCCcccCCCCChhhHHhhhhccccC
Q 038448 219 QL---V---DDHDLNLLQKYNDWTNRSRLFEAGAPGSKIVFTTRN-LGVAEKMG-PLPAYPLKELSNDDCLSVFSPHSLG 290 (385)
Q Consensus 219 ~~---~---~~~~~~~l~~~~~w~~l~~~l~~~~~gs~IivTTR~-~~va~~~~-~~~~~~l~~L~~~~a~~Lf~~~a~~ 290 (385)
.. . ..++.+.+ .....+.+...+........+|++|.. ..+...+. ....+++.+++.++....+...+-.
T Consensus 117 ~~~~~~kvvIIdead~l-t~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~ 195 (451)
T PRK06305 117 PSKSRYKIYIIDEVHML-TKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQ 195 (451)
T ss_pred hhcCCCEEEEEecHHhh-CHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHH
Confidence 10 0 11112222 223345566666554446666666533 33322221 2256889999999987777654321
Q ss_pred CCCCCCCccHHHHHHHHHHHcCCCh-HHHHHH
Q 038448 291 EKDFSTHPSLKEIGEKIVKKCNGLP-LVAKSL 321 (385)
Q Consensus 291 ~~~~~~~~~l~~~~~~i~~~c~glP-LAi~~~ 321 (385)
. +.. --.+.+..|++.++|.+ .|+..+
T Consensus 196 e-g~~---i~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 196 E-GIE---TSREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred c-CCC---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 1 111 11456778999999965 444443
No 153
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=95.83 E-value=0.044 Score=54.34 Aligned_cols=25 Identities=20% Similarity=0.197 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.++-+.++|++|.|||++|+.+++.
T Consensus 215 ~p~GILLyGPPGTGKT~LAKAlA~e 239 (512)
T TIGR03689 215 PPKGVLLYGPPGCGKTLIAKAVANS 239 (512)
T ss_pred CCcceEEECCCCCcHHHHHHHHHHh
Confidence 3456889999999999999999986
No 154
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=95.83 E-value=0.017 Score=60.63 Aligned_cols=45 Identities=18% Similarity=0.253 Sum_probs=32.3
Q ss_pred hhhHHHHHHHHhcCCCCCCCCceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 139 DKEKEETVKLLLRDDLRTDDGLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 139 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
+.-++.|+.+|..........-.++.++|++|+||||+|+.+...
T Consensus 328 ~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~ 372 (784)
T PRK10787 328 ERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKA 372 (784)
T ss_pred HHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 666777888776321102223457999999999999999999864
No 155
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.81 E-value=0.006 Score=52.13 Aligned_cols=22 Identities=23% Similarity=0.274 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 038448 162 VIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
+|.|+|++|+||||+|+.+...
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~ 22 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVEN 22 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999764
No 156
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.80 E-value=0.0057 Score=54.04 Aligned_cols=22 Identities=32% Similarity=0.431 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 038448 162 VIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
+|+|.|.+|+||||||+.+...
T Consensus 1 IigI~G~sGSGKTTla~~L~~~ 22 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQAL 22 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHH
Confidence 5899999999999999998864
No 157
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.79 E-value=0.027 Score=49.60 Aligned_cols=43 Identities=16% Similarity=0.045 Sum_probs=31.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCCCC
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSEDFD 203 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~ 203 (385)
.-.++.|.|.+|+||||||.++... ....=..++|++....+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~--~~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVE--TAGQGKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCCCCH
Confidence 4578999999999999999998764 222233567887655443
No 158
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.78 E-value=0.026 Score=49.92 Aligned_cols=48 Identities=17% Similarity=0.054 Sum_probs=35.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccc------cceEEEEecCCCCHHHHH
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSDVRVHNHF------DLKAWTCVSEDFDIIRVT 208 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F------~~~~wv~vs~~~~~~~~~ 208 (385)
.-.++.|+|.+|+|||+||..+.... ...- ..++|++....++...+.
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~--~~~~~~~g~~~~v~yi~~e~~~~~~rl~ 71 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEA--QLPGELGGLEGKVVYIDTEGAFRPERLV 71 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHh--hcccccCCCcceEEEEecCCCCCHHHHH
Confidence 45799999999999999999886542 1222 457899887777665443
No 159
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.78 E-value=0.0081 Score=50.67 Aligned_cols=24 Identities=29% Similarity=0.292 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
...|.++|++|+||||+|+.+...
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~ 27 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKR 27 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999874
No 160
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=95.78 E-value=0.22 Score=50.41 Aligned_cols=169 Identities=14% Similarity=0.082 Sum_probs=87.9
Q ss_pred hHHHHHHHHhcCCCCCCCCceEEEEEcCCCCcHHHHHHHHhcccccc--------------------ccccceEEEEecC
Q 038448 141 EKEETVKLLLRDDLRTDDGLSVIPIIGTGRIGKTTLAQLAYSDVRVH--------------------NHFDLKAWTCVSE 200 (385)
Q Consensus 141 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~--------------------~~F~~~~wv~vs~ 200 (385)
-++.+.+++..+ .-...+.++|+.|+||||+|+.+.+..--. .+++ .+++....
T Consensus 24 iv~~L~~~i~~~-----~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~d-v~~idgas 97 (563)
T PRK06647 24 VVETLKHSIESN-----KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLD-VIEIDGAS 97 (563)
T ss_pred HHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCC-eEEecCcc
Confidence 344556666432 234578899999999999998887642111 1122 23333222
Q ss_pred CCCHHHHHHHHHHHhhcCCCC---CccchHHhh--chhhHhhHhhhccCCCCCcEEEEEcCC-hhHHhhcC-CCCcccCC
Q 038448 201 DFDIIRVTKSILKSIASDQLV---DDHDLNLLQ--KYNDWTNRSRLFEAGAPGSKIVFTTRN-LGVAEKMG-PLPAYPLK 273 (385)
Q Consensus 201 ~~~~~~~~~~il~~l~~~~~~---~~~~~~~l~--~~~~w~~l~~~l~~~~~gs~IivTTR~-~~va~~~~-~~~~~~l~ 273 (385)
...+..+ +++...+...... ..--+++.. ....++.+...+......+.+|++|.. ..+...+. ....+++.
T Consensus 98 ~~~vddI-r~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~SRc~~~~f~ 176 (563)
T PRK06647 98 NTSVQDV-RQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSRCQHFNFR 176 (563)
T ss_pred cCCHHHH-HHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHHhceEEEec
Confidence 2333333 3344332221110 011111111 334566677776654456666655543 33433222 22468889
Q ss_pred CCChhhHHhhhhccccCCCCCCCCccHHHHHHHHHHHcCCChHHHHH
Q 038448 274 ELSNDDCLSVFSPHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVAKS 320 (385)
Q Consensus 274 ~L~~~~a~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~c~glPLAi~~ 320 (385)
+++.++-...+...+.... .. --.+.+..|++.++|.+-.+..
T Consensus 177 ~l~~~el~~~L~~i~~~eg-i~---id~eAl~lLa~~s~GdlR~als 219 (563)
T PRK06647 177 LLSLEKIYNMLKKVCLEDQ-IK---YEDEALKWIAYKSTGSVRDAYT 219 (563)
T ss_pred CCCHHHHHHHHHHHHHHcC-CC---CCHHHHHHHHHHcCCCHHHHHH
Confidence 9999888777766542221 11 1135566788888887754433
No 161
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=95.76 E-value=0.18 Score=47.54 Aligned_cols=127 Identities=9% Similarity=0.062 Sum_probs=68.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcccccc--------------------ccccceEEEEec-CCCCHHHHHHHHHHHhhc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSDVRVH--------------------NHFDLKAWTCVS-EDFDIIRVTKSILKSIAS 217 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~--------------------~~F~~~~wv~vs-~~~~~~~~~~~il~~l~~ 217 (385)
-.....++|+.|+||||+|..+.+..--. .|.| ..++... ....+ +-.+++...+..
T Consensus 27 l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD-~~~i~~~~~~i~i-d~ir~l~~~~~~ 104 (329)
T PRK08058 27 LSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPD-VHLVAPDGQSIKK-DQIRYLKEEFSK 104 (329)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCC-EEEeccccccCCH-HHHHHHHHHHhh
Confidence 35677999999999999998774431000 0222 2223222 22223 233444444432
Q ss_pred CCCC---CccchHHhh--chhhHhhHhhhccCCCCCcEEEEEcCCh-hHHhhcC-CCCcccCCCCChhhHHhhhhcc
Q 038448 218 DQLV---DDHDLNLLQ--KYNDWTNRSRLFEAGAPGSKIVFTTRNL-GVAEKMG-PLPAYPLKELSNDDCLSVFSPH 287 (385)
Q Consensus 218 ~~~~---~~~~~~~l~--~~~~w~~l~~~l~~~~~gs~IivTTR~~-~va~~~~-~~~~~~l~~L~~~~a~~Lf~~~ 287 (385)
.... ..--++... +.+..+.+...+..-..++.+|++|.+. .+...+. ....+++.+++.++....+...
T Consensus 105 ~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 105 SGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred CCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 2210 011111111 3445566777776656677777777653 3333332 2367899999999987777643
No 162
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=95.76 E-value=0.025 Score=54.51 Aligned_cols=25 Identities=24% Similarity=0.208 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
..+-+.++|++|.|||+||+.+.+.
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~~ 202 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAHH 202 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHh
Confidence 4567889999999999999999985
No 163
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.75 E-value=0.01 Score=50.01 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
...+++|+|..|+|||||+..+...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 5679999999999999999998864
No 164
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=95.74 E-value=0.012 Score=50.38 Aligned_cols=36 Identities=22% Similarity=0.277 Sum_probs=28.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEE
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTC 197 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~ 197 (385)
.++|.|+|+.|+|||||+..+... ....|...++.+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~--~~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQE--FPDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHH--STTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh--cccccccceeec
Confidence 378999999999999999999884 556675555444
No 165
>PRK00625 shikimate kinase; Provisional
Probab=95.74 E-value=0.0074 Score=51.15 Aligned_cols=22 Identities=23% Similarity=0.241 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 038448 162 VIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.|.++||+|+||||+++.+.+.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~ 23 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKF 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999764
No 166
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=95.73 E-value=0.028 Score=49.84 Aligned_cols=46 Identities=13% Similarity=0.073 Sum_probs=34.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCCCCHHHH
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSEDFDIIRV 207 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 207 (385)
.-.++.|+|.+|+|||+||.++... ....-..++|++.. .++...+
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEECC-CCCHHHH
Confidence 4479999999999999999988764 22334567899876 5555443
No 167
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.71 E-value=0.007 Score=51.89 Aligned_cols=22 Identities=41% Similarity=0.465 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 038448 162 VIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
+|+|.|.+|+||||||+.+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 168
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.70 E-value=0.0089 Score=50.92 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
++|.|+|++|+|||||++.+...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHcc
Confidence 57999999999999999999874
No 169
>PRK05439 pantothenate kinase; Provisional
Probab=95.68 E-value=0.039 Score=51.17 Aligned_cols=26 Identities=31% Similarity=0.355 Sum_probs=22.9
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhc
Q 038448 157 DDGLSVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 157 ~~~~~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
....-+|+|.|.+|+||||+|..+..
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~ 108 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQA 108 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 35678999999999999999988865
No 170
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.66 E-value=0.011 Score=50.20 Aligned_cols=24 Identities=25% Similarity=0.205 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
-.+|.|+|++|+||||+|+.+...
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999999999874
No 171
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=95.65 E-value=0.36 Score=45.23 Aligned_cols=149 Identities=8% Similarity=0.038 Sum_probs=81.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccc-----ccccc--------------ccceEEEEe--cCCCCHHHHHHHHHHHhhcC
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSDV-----RVHNH--------------FDLKAWTCV--SEDFDIIRVTKSILKSIASD 218 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~-----~~~~~--------------F~~~~wv~v--s~~~~~~~~~~~il~~l~~~ 218 (385)
...+.+.|+.|+||+++|..+..-. ..... .+-..++.- +....+ +-.+++.+.+...
T Consensus 24 ~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~i-d~iR~l~~~~~~~ 102 (325)
T PRK06871 24 HHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGV-DQVREINEKVSQH 102 (325)
T ss_pred ceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCH-HHHHHHHHHHhhc
Confidence 4678899999999999998764321 10000 011222321 111222 2334555554433
Q ss_pred CCCCc---cchHHhh--chhhHhhHhhhccCCCCCcEEEEEcCCh-hHHhhcCC-CCcccCCCCChhhHHhhhhccccCC
Q 038448 219 QLVDD---HDLNLLQ--KYNDWTNRSRLFEAGAPGSKIVFTTRNL-GVAEKMGP-LPAYPLKELSNDDCLSVFSPHSLGE 291 (385)
Q Consensus 219 ~~~~~---~~~~~l~--~~~~w~~l~~~l~~~~~gs~IivTTR~~-~va~~~~~-~~~~~l~~L~~~~a~~Lf~~~a~~~ 291 (385)
..... --++... +....+.+...+-.-..++.+|++|.+. .+...+.+ -..+.+.+++.++..+.+.... ..
T Consensus 103 ~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~~~-~~ 181 (325)
T PRK06871 103 AQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQAQS-SA 181 (325)
T ss_pred cccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHHHHHh-cc
Confidence 32110 0111111 4556666777776656677777777654 44433332 3678999999999988777542 10
Q ss_pred CCCCCCccHHHHHHHHHHHcCCChHHH
Q 038448 292 KDFSTHPSLKEIGEKIVKKCNGLPLVA 318 (385)
Q Consensus 292 ~~~~~~~~l~~~~~~i~~~c~glPLAi 318 (385)
+ ...+...+..++|.|+.+
T Consensus 182 ------~--~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 182 ------E--ISEILTALRINYGRPLLA 200 (325)
T ss_pred ------C--hHHHHHHHHHcCCCHHHH
Confidence 1 112456788899999633
No 172
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.65 E-value=0.021 Score=45.93 Aligned_cols=25 Identities=32% Similarity=0.275 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSDV 184 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~ 184 (385)
-.+|.+.|.-|.|||||++.+....
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3589999999999999999998753
No 173
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.64 E-value=0.0069 Score=46.93 Aligned_cols=21 Identities=48% Similarity=0.488 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcc
Q 038448 163 IPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 163 i~I~G~gGiGKTtLA~~v~~~ 183 (385)
|-|+|.+|+|||+||..+..+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999997754
No 174
>PRK10865 protein disaggregation chaperone; Provisional
Probab=95.63 E-value=0.16 Score=54.08 Aligned_cols=40 Identities=25% Similarity=0.353 Sum_probs=31.4
Q ss_pred hhhhHHHHHHHHhcCCCCCCCCceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 138 KDKEKEETVKLLLRDDLRTDDGLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 138 ~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
++.+...+++.|.... ..-+.++|.+|+|||++|..+...
T Consensus 183 r~~ei~~~i~iL~r~~------~~n~lL~G~pGvGKT~l~~~la~~ 222 (857)
T PRK10865 183 RDEEIRRTIQVLQRRT------KNNPVLIGEPGVGKTAIVEGLAQR 222 (857)
T ss_pred CHHHHHHHHHHHhcCC------cCceEEECCCCCCHHHHHHHHHHH
Confidence 3778888888886643 244669999999999999888764
No 175
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.62 E-value=0.0081 Score=51.28 Aligned_cols=22 Identities=36% Similarity=0.451 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 038448 162 VIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
+|+|.|.+|+||||||..+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~ 22 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQ 22 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998864
No 176
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.61 E-value=0.011 Score=48.84 Aligned_cols=34 Identities=26% Similarity=0.069 Sum_probs=25.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccccceEEE
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWT 196 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 196 (385)
.||-|.|.+|.||||||+.+... ....-..+.++
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~--L~~~g~~~~~L 36 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERR--LFARGIKVYLL 36 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHH--HHHTTS-EEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEe
Confidence 68999999999999999999875 33333344444
No 177
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.60 E-value=0.098 Score=52.36 Aligned_cols=123 Identities=10% Similarity=0.022 Sum_probs=66.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhccccccccccce-------EEEEecCCCCHHHHHHHHHHHhhcCCCCCccchHHhh
Q 038448 158 DGLSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLK-------AWTCVSEDFDIIRVTKSILKSIASDQLVDDHDLNLLQ 230 (385)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~-------~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~ 230 (385)
..++=|..+|+||.|||++|+.+.+. ..-.|=.+ -||. ..++.+.++.++.....+ ...-++++.
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAne--~~~nFlsvkgpEL~sk~vG-----eSEr~ir~iF~kAR~~aP-~IiFfDEiD 537 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALANE--AGMNFLSVKGPELFSKYVG-----ESERAIREVFRKARQVAP-CIIFFDEID 537 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhhh--hcCCeeeccCHHHHHHhcC-----chHHHHHHHHHHHhhcCC-eEEehhhHH
Confidence 45677899999999999999999985 44445211 2332 345667777766654443 222222222
Q ss_pred -------------chhhHhhHhhhccCCCCCcEEEE---EcCChhHHh-hcCC---CCcccCCCCChhhHHhhhhccc
Q 038448 231 -------------KYNDWTNRSRLFEAGAPGSKIVF---TTRNLGVAE-KMGP---LPAYPLKELSNDDCLSVFSPHS 288 (385)
Q Consensus 231 -------------~~~~w~~l~~~l~~~~~gs~Iiv---TTR~~~va~-~~~~---~~~~~l~~L~~~~a~~Lf~~~a 288 (385)
......++..-+........|+| |-|...+-. .+.+ +..+.+..-+.+--.++|+.++
T Consensus 538 si~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~ 615 (693)
T KOG0730|consen 538 ALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCA 615 (693)
T ss_pred hHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHH
Confidence 12233334444433333334433 333222221 1222 2455566666666688888776
No 178
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.60 E-value=0.0098 Score=53.01 Aligned_cols=26 Identities=31% Similarity=0.359 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 158 DGLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
+.+..|.++||+|.||||..|.++.+
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~h 42 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSH 42 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHH
Confidence 45678899999999999999999886
No 179
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.55 E-value=0.0092 Score=49.17 Aligned_cols=22 Identities=23% Similarity=0.425 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 038448 162 VIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
++.++|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4789999999999999999774
No 180
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.54 E-value=0.01 Score=50.39 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
++|.+.|++|+||||+|+.+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999764
No 181
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=95.54 E-value=0.042 Score=45.72 Aligned_cols=37 Identities=24% Similarity=0.407 Sum_probs=30.2
Q ss_pred hhhHHHHHHHHhcCCCCCCCCceEEEEEcCCCCcHHHHHHHHhccc
Q 038448 139 DKEKEETVKLLLRDDLRTDDGLSVIPIIGTGRIGKTTLAQLAYSDV 184 (385)
Q Consensus 139 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 184 (385)
.+..+++.++|. + +++.++|..|+|||||...+..+.
T Consensus 23 ~~g~~~l~~~l~--------~-k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 23 GEGIEELKELLK--------G-KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TTTHHHHHHHHT--------T-SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CcCHHHHHHHhc--------C-CEEEEECCCCCCHHHHHHHHHhhc
Confidence 455677777772 3 799999999999999999998863
No 182
>PRK06217 hypothetical protein; Validated
Probab=95.53 E-value=0.0095 Score=51.01 Aligned_cols=34 Identities=29% Similarity=0.406 Sum_probs=25.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhccccccccc--cceEEE
Q 038448 162 VIPIIGTGRIGKTTLAQLAYSDVRVHNHF--DLKAWT 196 (385)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F--~~~~wv 196 (385)
.|.|.|.+|+||||||+.+...... .+| |..+|.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~-~~~~~D~~~~~ 38 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDI-PHLDTDDYFWL 38 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC-cEEEcCceeec
Confidence 5899999999999999999875322 233 445554
No 183
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.53 E-value=0.012 Score=51.36 Aligned_cols=26 Identities=15% Similarity=0.190 Sum_probs=22.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 158 DGLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
...+.|.|+|++|+|||||+..+...
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 46688999999999999999999753
No 184
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.51 E-value=0.012 Score=48.05 Aligned_cols=39 Identities=18% Similarity=0.342 Sum_probs=26.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecC
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSE 200 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~ 200 (385)
++|.|+|..|+|||||++.+.+.. .+..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l-~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL-KRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH-HHTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH-hHcCCceEEEEEccC
Confidence 489999999999999999999863 234455444555443
No 185
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.51 E-value=0.011 Score=49.28 Aligned_cols=20 Identities=45% Similarity=0.645 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 038448 162 VIPIIGTGRIGKTTLAQLAY 181 (385)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~ 181 (385)
.|+|.|.||+||||++..+-
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999998886
No 186
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=95.48 E-value=0.012 Score=46.14 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHhccc
Q 038448 163 IPIIGTGRIGKTTLAQLAYSDV 184 (385)
Q Consensus 163 i~I~G~gGiGKTtLA~~v~~~~ 184 (385)
|.|+|..|+|||||.+.+....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999998754
No 187
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.48 E-value=0.048 Score=50.95 Aligned_cols=56 Identities=13% Similarity=0.162 Sum_probs=39.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcccccccc----ccceEEEEecCCCCHHHHHHHHHHHh
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSDVRVHNH----FDLKAWTCVSEDFDIIRVTKSILKSI 215 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~~~il~~l 215 (385)
.-.++-|+|.+|+|||||+.+++-....... =..++||+....|+..++. +++..+
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~ 153 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEAR 153 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHc
Confidence 4588899999999999999988754222111 1268999988888877654 344443
No 188
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.46 E-value=0.014 Score=50.70 Aligned_cols=26 Identities=23% Similarity=0.133 Sum_probs=22.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 158 DGLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
+...+|.|+|++|+||||||+.+...
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~ 47 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEA 47 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45689999999999999999999763
No 189
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.44 E-value=0.013 Score=58.26 Aligned_cols=44 Identities=18% Similarity=0.246 Sum_probs=30.8
Q ss_pred hhhHHHHHHHHhcCCCCCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 038448 139 DKEKEETVKLLLRDDLRTDDGLSVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 139 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
++.++.|++.|...-..-...-+++.++|++|+||||||+.+..
T Consensus 82 ee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 82 EEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 55666777776321100123447999999999999999999876
No 190
>PRK10865 protein disaggregation chaperone; Provisional
Probab=95.44 E-value=0.7 Score=49.37 Aligned_cols=45 Identities=16% Similarity=0.223 Sum_probs=30.3
Q ss_pred hhhHHHHHHHHhcCC---CCCCCCceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 139 DKEKEETVKLLLRDD---LRTDDGLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 139 ~~~~~~l~~~L~~~~---~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
+...+.+.+.+.... ...+....++.++|++|+|||+||+.+.+.
T Consensus 574 ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~ 621 (857)
T PRK10865 574 NEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANF 621 (857)
T ss_pred HHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 555666666664321 101223457889999999999999998763
No 191
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=95.43 E-value=0.011 Score=48.42 Aligned_cols=22 Identities=36% Similarity=0.496 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 038448 162 VIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
+|.|.|.+|+||||+|+.+...
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~ 22 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKK 22 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999864
No 192
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.42 E-value=0.32 Score=43.10 Aligned_cols=37 Identities=22% Similarity=0.140 Sum_probs=28.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCC
Q 038448 158 DGLSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSED 201 (385)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~ 201 (385)
.+++=+.++|++|.|||-||+.|+++ .++-|+.||..
T Consensus 179 aQPKGvlLygppgtGktLlaraVahh-------t~c~firvsgs 215 (404)
T KOG0728|consen 179 AQPKGVLLYGPPGTGKTLLARAVAHH-------TDCTFIRVSGS 215 (404)
T ss_pred CCCcceEEecCCCCchhHHHHHHHhh-------cceEEEEechH
Confidence 45677889999999999999999985 23445667653
No 193
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.42 E-value=0.012 Score=51.28 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
-.+|+|+|++|+|||||++.+...
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 368999999999999999999874
No 194
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.40 E-value=0.011 Score=50.24 Aligned_cols=22 Identities=36% Similarity=0.404 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 038448 162 VIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.|.|.|.+|.||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999875
No 195
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=95.40 E-value=0.018 Score=51.24 Aligned_cols=36 Identities=28% Similarity=0.240 Sum_probs=29.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEe
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCV 198 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v 198 (385)
-.++|+|..|+|||||...+..+ ....|..+++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~--~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYY--LRHKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHh--hcccCCEEEEEec
Confidence 46789999999999999998875 6778877777653
No 196
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.39 E-value=0.02 Score=48.39 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.++.|.|++|+|||||++.++.+
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~ 27 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLED 27 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhh
Confidence 67899999999999999999986
No 197
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.39 E-value=0.014 Score=48.26 Aligned_cols=38 Identities=24% Similarity=0.267 Sum_probs=27.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCC
Q 038448 162 VIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSED 201 (385)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~ 201 (385)
++.|+|.+|+||||++..+.... ...-..++|++....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~--~~~~~~v~~~~~e~~ 38 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI--ATKGGKVVYVDIEEE 38 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH--HhcCCEEEEEECCcc
Confidence 46899999999999999987752 223345667766544
No 198
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=95.37 E-value=0.015 Score=47.98 Aligned_cols=48 Identities=21% Similarity=0.196 Sum_probs=31.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCCCCHHHHHHHHHHHhhcCC
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSEDFDIIRVTKSILKSIASDQ 219 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~ 219 (385)
.+++.|+|.+|+||||+...+-.. . .|... -+...++-+++...+...
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~--l--~~~~i--------vNyG~~Mle~A~k~glve 51 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKE--L--VKHKI--------VNYGDLMLEIAKKKGLVE 51 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHH--H--hhcee--------eeHhHHHHHHHHHhCCcc
Confidence 689999999999999998877653 1 11111 145566666666665433
No 199
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=95.35 E-value=0.59 Score=44.05 Aligned_cols=150 Identities=9% Similarity=0.002 Sum_probs=81.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc-----cccc--------------ccccceEEEEecC---CCCHHHHHHHHHHHhh
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD-----VRVH--------------NHFDLKAWTCVSE---DFDIIRVTKSILKSIA 216 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~-----~~~~--------------~~F~~~~wv~vs~---~~~~~~~~~~il~~l~ 216 (385)
-..-+.+.|+.|+||+++|..+..- +.-. ...+-..++.-.. ...+ +-.+++.+.+.
T Consensus 23 l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~i-dqiR~l~~~~~ 101 (334)
T PRK07993 23 GHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGV-DAVREVTEKLY 101 (334)
T ss_pred cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCH-HHHHHHHHHHh
Confidence 3567889999999999999775432 1100 0011122332111 1222 23344555544
Q ss_pred cCCCCCc---cchHHhh--chhhHhhHhhhccCCCCCcEEEEEcCCh-hHHhhcC-CCCcccCCCCChhhHHhhhhcccc
Q 038448 217 SDQLVDD---HDLNLLQ--KYNDWTNRSRLFEAGAPGSKIVFTTRNL-GVAEKMG-PLPAYPLKELSNDDCLSVFSPHSL 289 (385)
Q Consensus 217 ~~~~~~~---~~~~~l~--~~~~w~~l~~~l~~~~~gs~IivTTR~~-~va~~~~-~~~~~~l~~L~~~~a~~Lf~~~a~ 289 (385)
....... --++... +....+.+...+-.-..++-+|++|.+. .+...+. ....+.+.+++.++....+....
T Consensus 102 ~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~- 180 (334)
T PRK07993 102 EHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAPPPEQYALTWLSREV- 180 (334)
T ss_pred hccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCCCCCHHHHHHHHHHcc-
Confidence 3332111 0011111 4455666777776555667777666653 4544433 23568899999999887775431
Q ss_pred CCCCCCCCccHHHHHHHHHHHcCCChHHH
Q 038448 290 GEKDFSTHPSLKEIGEKIVKKCNGLPLVA 318 (385)
Q Consensus 290 ~~~~~~~~~~l~~~~~~i~~~c~glPLAi 318 (385)
+ .+ .+.+..++..++|.|...
T Consensus 181 ~-----~~---~~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 181 T-----MS---QDALLAALRLSAGAPGAA 201 (334)
T ss_pred C-----CC---HHHHHHHHHHcCCCHHHH
Confidence 1 01 233667899999999643
No 200
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=95.33 E-value=0.13 Score=51.48 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+-+.++|++|+|||+||+.+.+.
T Consensus 88 ~~giLL~GppGtGKT~la~alA~~ 111 (495)
T TIGR01241 88 PKGVLLVGPPGTGKTLLAKAVAGE 111 (495)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 345889999999999999999875
No 201
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.32 E-value=0.025 Score=48.99 Aligned_cols=35 Identities=23% Similarity=0.140 Sum_probs=28.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEe
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCV 198 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v 198 (385)
.|++|+|++|+|||||.+.+.. ....=...+||.-
T Consensus 29 evv~iiGpSGSGKSTlLRclN~---LE~~~~G~I~i~g 63 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNG---LEEPDSGSITVDG 63 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHC---CcCCCCceEEECC
Confidence 6899999999999999999976 4444456777753
No 202
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.32 E-value=0.024 Score=53.97 Aligned_cols=26 Identities=27% Similarity=0.324 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 158 DGLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
...++|+++|++|+||||++..+...
T Consensus 239 ~~~~vI~LVGptGvGKTTTiaKLA~~ 264 (436)
T PRK11889 239 KEVQTIALIGPTGVGKTTTLAKMAWQ 264 (436)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHHHH
Confidence 34589999999999999999888753
No 203
>PRK14530 adenylate kinase; Provisional
Probab=95.29 E-value=0.013 Score=51.50 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 038448 162 VIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.|.|+|++|+||||+|+.+...
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~ 26 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEE 26 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999763
No 204
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.29 E-value=0.013 Score=50.35 Aligned_cols=24 Identities=42% Similarity=0.320 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
..+|+|-||=|+||||||+.+.++
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~ 27 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEH 27 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHH
Confidence 478999999999999999999886
No 205
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.29 E-value=0.013 Score=47.56 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 038448 162 VIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.|.|+|+.|+|||||++.+...
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhc
Confidence 3789999999999999999874
No 206
>PRK13947 shikimate kinase; Provisional
Probab=95.28 E-value=0.013 Score=49.40 Aligned_cols=22 Identities=32% Similarity=0.333 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 038448 162 VIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
-|.|+|++|+||||+|+.+.+.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~ 24 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATT 24 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 4889999999999999999874
No 207
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.28 E-value=0.015 Score=49.92 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.++.|+|+.|+|||||++.+...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 47899999999999999999774
No 208
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.27 E-value=0.28 Score=50.50 Aligned_cols=169 Identities=12% Similarity=0.110 Sum_probs=85.5
Q ss_pred hhhHHHHHHHHhcCCCC---CCCCceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCC-C-----CH-HHHH
Q 038448 139 DKEKEETVKLLLRDDLR---TDDGLSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSED-F-----DI-IRVT 208 (385)
Q Consensus 139 ~~~~~~l~~~L~~~~~~---~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-~-----~~-~~~~ 208 (385)
.+|.++++++|-..... +-.-++=+.++|++|.|||-||++++....|. |+++|.. | .. ....
T Consensus 320 K~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVP-------F~svSGSEFvE~~~g~~asrv 392 (774)
T KOG0731|consen 320 KEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------FFSVSGSEFVEMFVGVGASRV 392 (774)
T ss_pred HHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCc-------eeeechHHHHHHhcccchHHH
Confidence 45667778877542110 12335668899999999999999999864332 3443332 1 00 1222
Q ss_pred HHHHHHhhcCCCC--CccchHHhh--------------chhhHhhHhhhccCCCCCcEE--EEEcCChhHHhh--cCC--
Q 038448 209 KSILKSIASDQLV--DDHDLNLLQ--------------KYNDWTNRSRLFEAGAPGSKI--VFTTRNLGVAEK--MGP-- 266 (385)
Q Consensus 209 ~~il~~l~~~~~~--~~~~~~~l~--------------~~~~w~~l~~~l~~~~~gs~I--ivTTR~~~va~~--~~~-- 266 (385)
+++........+. ..+.++.+- ...-.+++..-+.....++.| |-+|...++... +.+
T Consensus 393 r~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGR 472 (774)
T KOG0731|consen 393 RDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRPGR 472 (774)
T ss_pred HHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhcCCCc
Confidence 3333322222110 111122111 122233444333333333333 345655555432 222
Q ss_pred -CCcccCCCCChhhHHhhhhccccCCCCCCCCccHHHHHHHHHHHcCCChHHH
Q 038448 267 -LPAYPLKELSNDDCLSVFSPHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVA 318 (385)
Q Consensus 267 -~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~c~glPLAi 318 (385)
+..+.+..-+.....++|..++-.... ..+...+.+ |+...-|++=|.
T Consensus 473 fdr~i~i~~p~~~~r~~i~~~h~~~~~~---~~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 473 FDRQIQIDLPDVKGRASILKVHLRKKKL---DDEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred cccceeccCCchhhhHHHHHHHhhccCC---CcchhhHHH-HHhcCCCCcHHH
Confidence 256777777888888888877633221 133445555 777777776443
No 209
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=95.26 E-value=0.016 Score=50.74 Aligned_cols=27 Identities=30% Similarity=0.436 Sum_probs=24.1
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 157 DDGLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 157 ~~~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
..++++|+++|..|+|||||..++...
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999998764
No 210
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.23 E-value=0.014 Score=49.22 Aligned_cols=21 Identities=38% Similarity=0.479 Sum_probs=18.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcc
Q 038448 163 IPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 163 i~I~G~gGiGKTtLA~~v~~~ 183 (385)
|.|.|.+|+|||||++.+++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~ 22 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEE 22 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHH
Confidence 679999999999999998875
No 211
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.20 E-value=0.11 Score=50.81 Aligned_cols=47 Identities=23% Similarity=0.221 Sum_probs=35.0
Q ss_pred hhhHHHHHHHHhcCCC---CCCCCceEEEEEcCCCCcHHHHHHHHhcccc
Q 038448 139 DKEKEETVKLLLRDDL---RTDDGLSVIPIIGTGRIGKTTLAQLAYSDVR 185 (385)
Q Consensus 139 ~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 185 (385)
..|.++|+++|-+... -+..=++=|.++|++|.|||-||+++.....
T Consensus 313 K~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~ 362 (752)
T KOG0734|consen 313 KQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAG 362 (752)
T ss_pred HHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccC
Confidence 5678899999955211 0223356788999999999999999998643
No 212
>PRK13949 shikimate kinase; Provisional
Probab=95.19 E-value=0.015 Score=49.18 Aligned_cols=22 Identities=32% Similarity=0.338 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 038448 162 VIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
-|.|+|++|.||||+++.+...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999874
No 213
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.19 E-value=0.034 Score=49.60 Aligned_cols=63 Identities=24% Similarity=0.150 Sum_probs=34.6
Q ss_pred hHHHHHHHHhcCCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCCCCHHHH
Q 038448 141 EKEETVKLLLRDDLRTDDGLSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSEDFDIIRV 207 (385)
Q Consensus 141 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 207 (385)
+..++++.+... ..+..+|+|.|+||+||+||.-.+....+-+.+=-.++-|.-|.+++--.+
T Consensus 14 ~~~~ll~~l~~~----~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAl 76 (266)
T PF03308_consen 14 EARELLKRLYPH----TGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGAL 76 (266)
T ss_dssp HHHHHHHHHGGG----TT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---S
T ss_pred HHHHHHHHHHhh----cCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcc
Confidence 345566666543 235689999999999999999887664322222223344444445544333
No 214
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=95.16 E-value=0.1 Score=55.49 Aligned_cols=58 Identities=22% Similarity=0.216 Sum_probs=37.3
Q ss_pred HHHHHHHHHHH--hhhhhhHHHHHHHHhcC---CCCCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 038448 125 KIEDRTIRLQE--IEKDKEKEETVKLLLRD---DLRTDDGLSVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 125 ~i~~~~~~l~~--i~~~~~~~~l~~~L~~~---~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
++..+...|.. ++++...+.+.+.+... .........++.++|++|+|||.||+.+..
T Consensus 556 ~l~~l~~~L~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~ 618 (852)
T TIGR03345 556 AVLSLPDRLAERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAE 618 (852)
T ss_pred HHHHHHHHhcCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 44445444432 33467777777777542 111233456899999999999999987754
No 215
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=95.15 E-value=0.024 Score=45.79 Aligned_cols=34 Identities=18% Similarity=0.119 Sum_probs=25.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccccceEEEE
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTC 197 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~ 197 (385)
.+++|+|..|+|||||.+.+... .......+++.
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~---~~~~~G~i~~~ 45 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGL---LPPDSGSILIN 45 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTS---SHESEEEEEET
T ss_pred CEEEEEccCCCccccceeeeccc---ccccccccccc
Confidence 58999999999999999999874 22244555543
No 216
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.15 E-value=0.011 Score=46.93 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=18.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcccccccccc
Q 038448 163 IPIIGTGRIGKTTLAQLAYSDVRVHNHFD 191 (385)
Q Consensus 163 i~I~G~gGiGKTtLA~~v~~~~~~~~~F~ 191 (385)
|.|+|.+|+||||+|+.+... ....|.
T Consensus 2 vLleg~PG~GKT~la~~lA~~--~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARS--LGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHHH--TT--EE
T ss_pred EeeECCCccHHHHHHHHHHHH--cCCcee
Confidence 578999999999999999874 445563
No 217
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=95.14 E-value=0.019 Score=49.77 Aligned_cols=24 Identities=21% Similarity=0.230 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
..+|.|.|.+|+||||+|+.+...
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~ 26 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARH 26 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999874
No 218
>CHL00095 clpC Clp protease ATP binding subunit
Probab=95.13 E-value=1.3 Score=47.16 Aligned_cols=60 Identities=20% Similarity=0.236 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHH--hhhhhhHHHHHHHHhcCC---CCCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 038448 123 AAKIEDRTIRLQE--IEKDKEKEETVKLLLRDD---LRTDDGLSVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 123 ~~~i~~~~~~l~~--i~~~~~~~~l~~~L~~~~---~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
..++..+..+|.. ++++.-++.+.+.+.... ...+.....+.++|++|+|||+||+.+.+
T Consensus 497 ~~~l~~l~~~L~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~ 561 (821)
T CHL00095 497 SEKLLHMEETLHKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALAS 561 (821)
T ss_pred HHHHHHHHHHhcCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHH
Confidence 3445555555543 233666677777664321 11222345677999999999999988765
No 219
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.12 E-value=0.02 Score=49.12 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
...+|.|+|++|+|||||++.+...
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4578999999999999999999874
No 220
>PLN02348 phosphoribulokinase
Probab=95.12 E-value=0.023 Score=54.01 Aligned_cols=26 Identities=31% Similarity=0.337 Sum_probs=23.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 158 DGLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
+...+|+|.|.+|+||||+|+.+.+.
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~ 72 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSV 72 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999998764
No 221
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.12 E-value=0.28 Score=47.13 Aligned_cols=25 Identities=24% Similarity=0.219 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
..++|.++|+.|+||||.+..+...
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~ 197 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAI 197 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999998887654
No 222
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=95.12 E-value=0.042 Score=44.63 Aligned_cols=23 Identities=30% Similarity=0.265 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.-|.|+|.+|+||+++|+.++..
T Consensus 22 ~pvli~GE~GtGK~~~A~~lh~~ 44 (138)
T PF14532_consen 22 SPVLITGEPGTGKSLLARALHRY 44 (138)
T ss_dssp S-EEEECCTTSSHHHHHHCCHHT
T ss_pred CcEEEEcCCCCCHHHHHHHHHhh
Confidence 55789999999999999998875
No 223
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.11 E-value=0.015 Score=47.94 Aligned_cols=22 Identities=32% Similarity=0.359 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 038448 162 VIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
+|.|+|.+|+||||||+.+...
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~ 22 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEK 22 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999998764
No 224
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=95.11 E-value=0.35 Score=45.16 Aligned_cols=82 Identities=12% Similarity=0.084 Sum_probs=49.1
Q ss_pred chhhHhhHhhhccCCCCCcEEEEEcC-ChhHHhhcCC-CCcccCCCCChhhHHhhhhccccCCCCCCCCccHHHHHHHHH
Q 038448 231 KYNDWTNRSRLFEAGAPGSKIVFTTR-NLGVAEKMGP-LPAYPLKELSNDDCLSVFSPHSLGEKDFSTHPSLKEIGEKIV 308 (385)
Q Consensus 231 ~~~~w~~l~~~l~~~~~gs~IivTTR-~~~va~~~~~-~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~l~~~~~~i~ 308 (385)
+....+.+...+-.-. .+.+|++|. ...+...+.+ ...+++.+++.++..+.+....... ........++
T Consensus 137 ~~~aaNaLLK~LEEPp-~~~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~-------~~~~~~~~l~ 208 (314)
T PRK07399 137 NEAAANALLKTLEEPG-NGTLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEE-------ILNINFPELL 208 (314)
T ss_pred CHHHHHHHHHHHhCCC-CCeEEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccc-------cchhHHHHHH
Confidence 4455666666665433 445555554 3344433332 3678999999999998888653111 1011135788
Q ss_pred HHcCCChHHHHH
Q 038448 309 KKCNGLPLVAKS 320 (385)
Q Consensus 309 ~~c~glPLAi~~ 320 (385)
..++|.|..+..
T Consensus 209 ~~a~Gs~~~al~ 220 (314)
T PRK07399 209 ALAQGSPGAAIA 220 (314)
T ss_pred HHcCCCHHHHHH
Confidence 999999965544
No 225
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=95.11 E-value=0.053 Score=42.95 Aligned_cols=42 Identities=14% Similarity=0.076 Sum_probs=29.4
Q ss_pred hhhHHHHHHHHhcCCCCCCCCceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 139 DKEKEETVKLLLRDDLRTDDGLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 139 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
+.-.+.|.+.+... ....+-|++.+|.+|+|||.+++.+.++
T Consensus 35 ~~v~~ai~~~l~~~---~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 35 EVVVNAIKGHLANP---NPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HHHHHHHHHHHcCC---CCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 34445555555443 3467789999999999999977666543
No 226
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=95.09 E-value=0.016 Score=47.75 Aligned_cols=21 Identities=38% Similarity=0.457 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcc
Q 038448 163 IPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 163 i~I~G~gGiGKTtLA~~v~~~ 183 (385)
|.++|++|.||||+|+.+...
T Consensus 2 i~l~G~~GsGKstla~~la~~ 22 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKA 22 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 689999999999999999764
No 227
>PRK05973 replicative DNA helicase; Provisional
Probab=95.09 E-value=0.065 Score=47.70 Aligned_cols=48 Identities=10% Similarity=-0.005 Sum_probs=31.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCCCCHHHHHHHH
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSEDFDIIRVTKSI 211 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 211 (385)
-.++.|.|.+|+|||+++.++.... .+. =..+++++...+ ...+...+
T Consensus 64 Gsl~LIaG~PG~GKT~lalqfa~~~-a~~-Ge~vlyfSlEes--~~~i~~R~ 111 (237)
T PRK05973 64 GDLVLLGARPGHGKTLLGLELAVEA-MKS-GRTGVFFTLEYT--EQDVRDRL 111 (237)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHH-Hhc-CCeEEEEEEeCC--HHHHHHHH
Confidence 3688999999999999999876542 222 234666765543 44454443
No 228
>PRK13975 thymidylate kinase; Provisional
Probab=95.09 E-value=0.018 Score=49.78 Aligned_cols=23 Identities=35% Similarity=0.326 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+|.|.|+.|+||||+|+.+...
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~ 25 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEK 25 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999875
No 229
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.08 E-value=0.015 Score=47.82 Aligned_cols=43 Identities=21% Similarity=0.237 Sum_probs=31.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCCCCHHHHHHHHHHHhhc
Q 038448 162 VIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSEDFDIIRVTKSILKSIAS 217 (385)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~ 217 (385)
+|.|-|++|+||||+|+.+.++.-.+ | | +.-.+++++++..+.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~--~-----v------saG~iFR~~A~e~gm 44 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK--L-----V------SAGTIFREMARERGM 44 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc--e-----e------eccHHHHHHHHHcCC
Confidence 68999999999999999998752221 1 2 234677777776654
No 230
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.08 E-value=0.043 Score=51.39 Aligned_cols=56 Identities=14% Similarity=0.188 Sum_probs=39.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccc----cceEEEEecCCCCHHHHHHHHHHHh
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSDVRVHNHF----DLKAWTCVSEDFDIIRVTKSILKSI 215 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F----~~~~wv~vs~~~~~~~~~~~il~~l 215 (385)
.-.++-|+|.+|+|||+|+.++.-.......+ ..++||+....|+...+.. +++.+
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~ 160 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEAL 160 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHc
Confidence 45788999999999999999887542221111 3789999988888776654 44444
No 231
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.05 E-value=0.015 Score=48.72 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHhcc
Q 038448 163 IPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 163 i~I~G~gGiGKTtLA~~v~~~ 183 (385)
|.|+|++|+||||+|+.+...
T Consensus 1 i~l~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHR 21 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999874
No 232
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.03 E-value=0.022 Score=43.92 Aligned_cols=21 Identities=38% Similarity=0.354 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 038448 161 SVIPIIGTGRIGKTTLAQLAY 181 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~ 181 (385)
..++|+|++|.|||||+..+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 679999999999999999876
No 233
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=95.02 E-value=0.11 Score=44.34 Aligned_cols=77 Identities=21% Similarity=0.239 Sum_probs=44.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEE----------------------ecCCCCHHHHHHHHHHHhh
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTC----------------------VSEDFDIIRVTKSILKSIA 216 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~----------------------vs~~~~~~~~~~~il~~l~ 216 (385)
..-+|+|-|+.-.||||||+.+.. .|....-|+ +-+..++..++..|...+.
T Consensus 3 K~~ivgiSG~TnsGKTTLak~l~~------~f~~~~lIhqDDFyKp~~Ei~v~~~n~~~wd~~esLdm~~fl~~ia~~l~ 76 (225)
T KOG3308|consen 3 KTLIVGISGCTNSGKTTLAKSLHR------FFPGCSLIHQDDFYKPENEIEVDYNNIDNWDLLESLDMEKFLEKIATWLD 76 (225)
T ss_pred eEEEEEeecccCCCHhHHHHHHHH------HccCCeeeccccccCchhhhhcccCCcchhcchhhhhHHHHHHHHHHHhc
Confidence 346899999999999999987643 233222222 1223356666666666665
Q ss_pred cCCCCCccchHHhhchhhHhhHhhhc
Q 038448 217 SDQLVDDHDLNLLQKYNDWTNRSRLF 242 (385)
Q Consensus 217 ~~~~~~~~~~~~l~~~~~w~~l~~~l 242 (385)
.... ...--+.+-+..+|+.....+
T Consensus 77 ~~~~-~~~ar~~~v~~~~~~~~~~~~ 101 (225)
T KOG3308|consen 77 SRHN-APEAREHLVSYANFEHYAQQF 101 (225)
T ss_pred Cccc-cchHhhhhhhhhHHHHHhhhc
Confidence 4333 111222233566677665555
No 234
>PRK14527 adenylate kinase; Provisional
Probab=95.01 E-value=0.021 Score=49.27 Aligned_cols=25 Identities=24% Similarity=0.242 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
...+|.|+|++|+||||+|+.+...
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~ 29 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQE 29 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999998764
No 235
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.00 E-value=0.051 Score=54.97 Aligned_cols=57 Identities=18% Similarity=0.203 Sum_probs=42.5
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCCCCHHHHHHHHHHHhhc
Q 038448 156 TDDGLSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSEDFDIIRVTKSILKSIAS 217 (385)
Q Consensus 156 ~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~ 217 (385)
..+.-++..++|++|+||||||.-+.++. .| .++=|++|..-+...+-..|...+..
T Consensus 322 ~RP~kKilLL~GppGlGKTTLAHViAkqa----GY-sVvEINASDeRt~~~v~~kI~~avq~ 378 (877)
T KOG1969|consen 322 KRPPKKILLLCGPPGLGKTTLAHVIAKQA----GY-SVVEINASDERTAPMVKEKIENAVQN 378 (877)
T ss_pred CCCccceEEeecCCCCChhHHHHHHHHhc----Cc-eEEEecccccccHHHHHHHHHHHHhh
Confidence 34567899999999999999999998752 23 35668888877777766666665543
No 236
>PLN02200 adenylate kinase family protein
Probab=94.98 E-value=0.022 Score=50.84 Aligned_cols=26 Identities=15% Similarity=0.105 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 158 DGLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
..+.+|.|+|++|+||||+|+.+...
T Consensus 41 ~~~~ii~I~G~PGSGKsT~a~~La~~ 66 (234)
T PLN02200 41 KTPFITFVLGGPGSGKGTQCEKIVET 66 (234)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999998763
No 237
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.97 E-value=0.041 Score=50.24 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 158 DGLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
...+++.++|++|+||||++..+...
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~ 95 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANK 95 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 45689999999999999988877653
No 238
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.97 E-value=0.021 Score=50.29 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
.+++|+|.+|.|||||++.+..
T Consensus 34 e~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 34 ETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CEEEEEcCCCCCHHHHHHHHhc
Confidence 5899999999999999999875
No 239
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=94.96 E-value=0.069 Score=48.36 Aligned_cols=56 Identities=20% Similarity=0.234 Sum_probs=39.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccc----cceEEEEecCCCCHHHHHHHHHHHh
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSDVRVHNHF----DLKAWTCVSEDFDIIRVTKSILKSI 215 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F----~~~~wv~vs~~~~~~~~~~~il~~l 215 (385)
.-.+.=|+|.+|+|||.|+.+++-+..+.... ..++||+-...|...++. +|++..
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~ 96 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERF 96 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHT
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhcc
Confidence 34688999999999999998876442222222 358999988888887765 466543
No 240
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=94.95 E-value=0.018 Score=47.88 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 038448 162 VIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
|++|+|+.|+|||||+.++...
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~ 22 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKA 22 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999875
No 241
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=94.94 E-value=0.19 Score=52.79 Aligned_cols=45 Identities=20% Similarity=0.243 Sum_probs=31.0
Q ss_pred hhhHHHHHHHHhcCC---CCCCCCceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 139 DKEKEETVKLLLRDD---LRTDDGLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 139 ~~~~~~l~~~L~~~~---~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
+..++.+.+.+.... ...+....++.++|++|+|||+||+.+...
T Consensus 460 ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~ 507 (731)
T TIGR02639 460 DEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEA 507 (731)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHH
Confidence 556667776665321 101223457899999999999999999874
No 242
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=94.94 E-value=0.029 Score=50.90 Aligned_cols=63 Identities=22% Similarity=0.152 Sum_probs=40.6
Q ss_pred HHHHHHhcCCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCCCCHHHHHHH
Q 038448 144 ETVKLLLRDDLRTDDGLSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSEDFDIIRVTKS 210 (385)
Q Consensus 144 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 210 (385)
+++..+.. ..++..+|+|.|.||+||+||.-.+-....-+.+=-.++=|.-|.+++--.++-+
T Consensus 39 ~ll~~l~p----~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGD 101 (323)
T COG1703 39 ELLRALYP----RTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGD 101 (323)
T ss_pred HHHHHHhh----cCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCcccccc
Confidence 45555543 3457789999999999999999877654322333234455666666665555444
No 243
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=94.92 E-value=0.066 Score=48.69 Aligned_cols=21 Identities=33% Similarity=0.354 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 038448 162 VIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~ 182 (385)
-|.+.|.+|+|||+||+.+..
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~ 43 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVAR 43 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 456899999999999999986
No 244
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=94.92 E-value=0.022 Score=48.25 Aligned_cols=23 Identities=22% Similarity=0.289 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
..|.|+|+.|.||||+++.+...
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~ 27 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHH
Confidence 56999999999999999999874
No 245
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.89 E-value=0.027 Score=48.14 Aligned_cols=44 Identities=16% Similarity=0.071 Sum_probs=29.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCCCCHHHHHH
Q 038448 162 VIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSEDFDIIRVTK 209 (385)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 209 (385)
++.|.|.+|+|||+|+.++.... .+. =..++|++...+ ...+..
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~-~~~-g~~v~~~s~e~~--~~~~~~ 44 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAG-LAR-GEPGLYVTLEES--PEELIE 44 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH-HHC-CCcEEEEECCCC--HHHHHH
Confidence 36789999999999999876642 122 245678876543 444433
No 246
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=94.83 E-value=0.24 Score=49.43 Aligned_cols=130 Identities=9% Similarity=-0.005 Sum_probs=68.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCCC--CHHHHHHHHHHHhhcCCCC--CccchHHhh---
Q 038448 158 DGLSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSEDF--DIIRVTKSILKSIASDQLV--DDHDLNLLQ--- 230 (385)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~~~~~il~~l~~~~~~--~~~~~~~l~--- 230 (385)
...+.+.++|++|.|||.||+.+.+. ...+|-.+.+-.+...+ ......+.+........+. -.+.++.+.
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~~--~~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r 351 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVALE--SRSRFISVKGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGR 351 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHhh--CCCeEEEeeCHHHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccC
Confidence 45568999999999999999999984 34445332222222211 2234444444444322221 123333332
Q ss_pred ---c----hhhHhhHhhhccCCCCCc--EEEEEcCChhHHhhc-----CCCCcccCCCCChhhHHhhhhcccc
Q 038448 231 ---K----YNDWTNRSRLFEAGAPGS--KIVFTTRNLGVAEKM-----GPLPAYPLKELSNDDCLSVFSPHSL 289 (385)
Q Consensus 231 ---~----~~~w~~l~~~l~~~~~gs--~IivTTR~~~va~~~-----~~~~~~~l~~L~~~~a~~Lf~~~a~ 289 (385)
. .....++...+......+ .||-||-.+...... .-...+.+.+-+.++....|..+.-
T Consensus 352 ~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~ 424 (494)
T COG0464 352 GPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLR 424 (494)
T ss_pred CCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhc
Confidence 1 123334444443223333 345555544433211 1234677888888888899987753
No 247
>PRK13531 regulatory ATPase RavA; Provisional
Probab=94.80 E-value=0.082 Score=51.78 Aligned_cols=54 Identities=15% Similarity=0.141 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHhh--hhhhHHHHHHHHhcCCCCCCCCceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 122 MAAKIEDRTIRLQEIE--KDKEKEETVKLLLRDDLRTDDGLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 122 ~~~~i~~~~~~l~~i~--~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
+..++..+...+.... +++..+.+...++.+ .-|.|.|++|+|||+||+.+...
T Consensus 7 ~~~~i~~l~~~l~~~i~gre~vI~lll~aalag--------~hVLL~GpPGTGKT~LAraLa~~ 62 (498)
T PRK13531 7 LAERISRLSSALEKGLYERSHAIRLCLLAALSG--------ESVFLLGPPGIAKSLIARRLKFA 62 (498)
T ss_pred HHHHHHHHHHHHhhhccCcHHHHHHHHHHHccC--------CCEEEECCCChhHHHHHHHHHHH
Confidence 4455666666665432 233344444444333 35789999999999999999874
No 248
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.78 E-value=0.039 Score=48.32 Aligned_cols=21 Identities=48% Similarity=0.700 Sum_probs=18.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 038448 162 VIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~ 182 (385)
.|+|+|-||+||||+|..+..
T Consensus 2 kIaI~GKGG~GKTtiaalll~ 22 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLK 22 (255)
T ss_pred eEEEecCCCccHHHHHHHHHH
Confidence 589999999999999987444
No 249
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.77 E-value=0.037 Score=50.69 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=23.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSDVRV 186 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~ 186 (385)
-++|.++|+||.|||+|.+.++++..+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSI 203 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSI 203 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhhee
Confidence 488999999999999999999987643
No 250
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=94.77 E-value=0.058 Score=46.43 Aligned_cols=22 Identities=36% Similarity=0.382 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 038448 162 VIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
+|+|.|+.|+||||+++.+.+.
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~ 23 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAER 23 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999875
No 251
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.76 E-value=0.027 Score=51.82 Aligned_cols=25 Identities=28% Similarity=0.317 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
..+++.++|++|+||||++..+...
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~ 217 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAAR 217 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999888764
No 252
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=94.76 E-value=0.068 Score=49.88 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.-..|.++|++|+||||+++.+...
T Consensus 132 ~~~~I~l~G~~GsGKStvg~~La~~ 156 (309)
T PRK08154 132 RRRRIALIGLRGAGKSTLGRMLAAR 156 (309)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4468999999999999999999864
No 253
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=94.76 E-value=0.023 Score=49.91 Aligned_cols=24 Identities=38% Similarity=0.499 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDV 184 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~ 184 (385)
.-|.|+|++|+|||||+.++..+.
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~ 29 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDE 29 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCc
Confidence 568899999999999999998764
No 254
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=94.75 E-value=0.04 Score=48.47 Aligned_cols=33 Identities=18% Similarity=0.200 Sum_probs=25.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccccceEEE
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWT 196 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 196 (385)
.+++|+|..|.|||||++.+..- .......+++
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl---~~~~~G~i~~ 62 (216)
T TIGR00960 30 EMVFLVGHSGAGKSTFLKLILGI---EKPTRGKIRF 62 (216)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC---CCCCceEEEE
Confidence 68999999999999999999873 2334455555
No 255
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.75 E-value=0.19 Score=49.84 Aligned_cols=24 Identities=29% Similarity=0.284 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
-.+|+|+|.+|+||||++.++...
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~ 373 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQR 373 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 479999999999999999887653
No 256
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.75 E-value=0.21 Score=47.55 Aligned_cols=40 Identities=18% Similarity=0.175 Sum_probs=27.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEec
Q 038448 158 DGLSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVS 199 (385)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs 199 (385)
...+++.++|+.|+||||++..+.... ...-..+.+|+..
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l--~~~g~~V~lItaD 243 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQL--LKQNRTVGFITTD 243 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEeCC
Confidence 346899999999999999998887542 1111235556654
No 257
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=94.74 E-value=0.023 Score=47.61 Aligned_cols=20 Identities=40% Similarity=0.416 Sum_probs=16.8
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 038448 163 IPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 163 i~I~G~gGiGKTtLA~~v~~ 182 (385)
|+|.|.+|+|||||+..+..
T Consensus 2 I~i~G~~stGKTTL~~~L~~ 21 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAA 21 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999986
No 258
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=94.73 E-value=0.029 Score=50.13 Aligned_cols=33 Identities=18% Similarity=0.077 Sum_probs=20.7
Q ss_pred EEcCCCCcHHHHHHHHhccccccccccceEEEEec
Q 038448 165 IIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVS 199 (385)
Q Consensus 165 I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs 199 (385)
|+|++|+||||+++.+.+.. ...-..++-|++.
T Consensus 1 ViGpaGSGKTT~~~~~~~~~--~~~~~~~~~vNLD 33 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWL--ESNGRDVYIVNLD 33 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHH--TTT-S-EEEEE--
T ss_pred CCCCCCCCHHHHHHHHHHHH--HhccCCceEEEcc
Confidence 68999999999999988753 2232334445533
No 259
>PLN02318 phosphoribulokinase/uridine kinase
Probab=94.72 E-value=0.041 Score=55.00 Aligned_cols=26 Identities=23% Similarity=0.439 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 158 DGLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
+++.+|+|.|.+|.||||||+.+...
T Consensus 63 ~~riIIGIaGpSGSGKTTLAk~Lagl 88 (656)
T PLN02318 63 DGIILVGVAGPSGAGKTVFTEKVLNF 88 (656)
T ss_pred CCeEEEEEECCCCCcHHHHHHHHHhh
Confidence 46789999999999999999999763
No 260
>CHL00176 ftsH cell division protein; Validated
Probab=94.70 E-value=0.32 Score=49.95 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+-|.++|++|.|||+||+.+.+.
T Consensus 216 p~gVLL~GPpGTGKT~LAralA~e 239 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKAIAGE 239 (638)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999999875
No 261
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=94.68 E-value=0.026 Score=46.71 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhccc
Q 038448 162 VIPIIGTGRIGKTTLAQLAYSDV 184 (385)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~~ 184 (385)
-|+++|.+|+|||||+..+.++.
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~ 24 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDE 24 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998653
No 262
>CHL00195 ycf46 Ycf46; Provisional
Probab=94.68 E-value=0.18 Score=49.96 Aligned_cols=25 Identities=20% Similarity=0.227 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
..+-|.++|++|.|||.+|+.+.+.
T Consensus 258 ~pkGILL~GPpGTGKTllAkaiA~e 282 (489)
T CHL00195 258 TPRGLLLVGIQGTGKSLTAKAIAND 282 (489)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHH
Confidence 4567889999999999999999885
No 263
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.67 E-value=0.047 Score=47.93 Aligned_cols=35 Identities=20% Similarity=0.100 Sum_probs=26.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhccccccccccceEEE
Q 038448 158 DGLSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWT 196 (385)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 196 (385)
.. .+++|+|..|.|||||++.+..- .......+++
T Consensus 22 ~~-e~~~i~G~nGsGKSTLl~~l~G~---~~~~~G~i~~ 56 (214)
T cd03297 22 NE-EVTGIFGASGAGKSTLLRCIAGL---EKPDGGTIVL 56 (214)
T ss_pred cc-eeEEEECCCCCCHHHHHHHHhCC---CCCCCceEEE
Confidence 35 89999999999999999999874 2233455554
No 264
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=94.67 E-value=0.027 Score=48.87 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
.+|+|+|+.|+||||+|+.+-+
T Consensus 3 ~iIglTG~igsGKStva~~~~~ 24 (201)
T COG0237 3 LIIGLTGGIGSGKSTVAKILAE 24 (201)
T ss_pred eEEEEecCCCCCHHHHHHHHHH
Confidence 6899999999999999988754
No 265
>PRK08356 hypothetical protein; Provisional
Probab=94.67 E-value=0.032 Score=48.26 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 038448 161 SVIPIIGTGRIGKTTLAQLAY 181 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~ 181 (385)
.+|.|+|++|+||||+|..+-
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999993
No 266
>PRK04182 cytidylate kinase; Provisional
Probab=94.66 E-value=0.026 Score=47.82 Aligned_cols=22 Identities=41% Similarity=0.508 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 038448 162 VIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
+|.|.|+.|+||||+|+.+...
T Consensus 2 ~I~i~G~~GsGKstia~~la~~ 23 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999874
No 267
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=94.66 E-value=0.027 Score=47.87 Aligned_cols=23 Identities=13% Similarity=0.160 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.++.|+|.+|.|||||++.+...
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~ 26 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAAL 26 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999874
No 268
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=94.65 E-value=0.045 Score=47.09 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+++|+|..|.|||||.+.+..-
T Consensus 19 e~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 19 EVLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999874
No 269
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=94.65 E-value=0.043 Score=48.27 Aligned_cols=33 Identities=18% Similarity=0.200 Sum_probs=25.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccccceEEE
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWT 196 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 196 (385)
.+++|+|..|.|||||++.+..- .......+++
T Consensus 31 ~~~~l~G~nGsGKSTLl~~i~Gl---~~~~~G~i~~ 63 (218)
T cd03255 31 EFVAIVGPSGSGKSTLLNILGGL---DRPTSGEVRV 63 (218)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC---cCCCceeEEE
Confidence 68999999999999999999874 2233455554
No 270
>PRK13946 shikimate kinase; Provisional
Probab=94.64 E-value=0.028 Score=48.20 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
..+.|.++|++|+||||+++.+.+.
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~ 33 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATM 33 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3467999999999999999999874
No 271
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=94.63 E-value=0.32 Score=51.98 Aligned_cols=59 Identities=20% Similarity=0.249 Sum_probs=36.8
Q ss_pred HHHHHHHHHHH--hhhhhhHHHHHHHHhcCCC---CCCCCceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 125 KIEDRTIRLQE--IEKDKEKEETVKLLLRDDL---RTDDGLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 125 ~i~~~~~~l~~--i~~~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
++..+...+.. ++.+..++.+.+.+..... .......++.++|++|+|||++|+.+...
T Consensus 555 ~l~~l~~~l~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~ 618 (852)
T TIGR03346 555 KLLHMEEVLHERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEF 618 (852)
T ss_pred HHHHHHHHhhcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 34444444422 3336667777777754211 01223467889999999999999998763
No 272
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=94.63 E-value=0.082 Score=49.86 Aligned_cols=57 Identities=19% Similarity=0.169 Sum_probs=40.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccc----cccceEEEEecCCCCHHHHHHHHHHHhh
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSDVRVHN----HFDLKAWTCVSEDFDIIRVTKSILKSIA 216 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~il~~l~ 216 (385)
.-.++-|+|.+|+|||+|+.+++-...... .-..++||+....|.+.++.. +++.++
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g 185 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFG 185 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcC
Confidence 447888999999999999988753322211 124689999999888877654 555554
No 273
>PRK13948 shikimate kinase; Provisional
Probab=94.62 E-value=0.032 Score=47.63 Aligned_cols=25 Identities=12% Similarity=0.123 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
....|.++|+.|+||||+++.+...
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~ 33 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRA 33 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999874
No 274
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=94.62 E-value=0.046 Score=47.97 Aligned_cols=33 Identities=24% Similarity=0.264 Sum_probs=26.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccccceEEE
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWT 196 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 196 (385)
.+++|+|..|.|||||++.+..- .......+++
T Consensus 29 ~~~~l~G~nGsGKSTLl~~i~Gl---~~~~~G~i~~ 61 (214)
T TIGR02673 29 EFLFLTGPSGAGKTTLLKLLYGA---LTPSRGQVRI 61 (214)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC---CCCCCceEEE
Confidence 58999999999999999999873 2334555655
No 275
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=94.61 E-value=0.8 Score=43.24 Aligned_cols=77 Identities=10% Similarity=0.215 Sum_probs=49.4
Q ss_pred chhhHhhHhhhccCCCCCcEEEEEcCC-hhHHhhcC-CCCcccCCCCChhhHHhhhhccccCCCCCCCCccHHHHHHHHH
Q 038448 231 KYNDWTNRSRLFEAGAPGSKIVFTTRN-LGVAEKMG-PLPAYPLKELSNDDCLSVFSPHSLGEKDFSTHPSLKEIGEKIV 308 (385)
Q Consensus 231 ~~~~w~~l~~~l~~~~~gs~IivTTR~-~~va~~~~-~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~l~~~~~~i~ 308 (385)
+...++.+...+-.-.+++.+|++|.+ ..+...+. ....+.+.+++.++..+.+...- . +. ...++
T Consensus 145 ~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~---~-----~~----~~~~l 212 (342)
T PRK06964 145 NVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG---V-----AD----ADALL 212 (342)
T ss_pred CHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC---C-----Ch----HHHHH
Confidence 556677777777665667766665554 44443332 23578899999999988886541 1 11 12357
Q ss_pred HHcCCChHHHH
Q 038448 309 KKCNGLPLVAK 319 (385)
Q Consensus 309 ~~c~glPLAi~ 319 (385)
..++|.|+.+.
T Consensus 213 ~~~~Gsp~~Al 223 (342)
T PRK06964 213 AEAGGAPLAAL 223 (342)
T ss_pred HHcCCCHHHHH
Confidence 78899997444
No 276
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=94.60 E-value=0.03 Score=45.55 Aligned_cols=24 Identities=42% Similarity=0.447 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDV 184 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~ 184 (385)
+.|.++|..|.|||||++.+-..+
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~ 25 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEE 25 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCC
Confidence 457899999999999999998754
No 277
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.60 E-value=0.047 Score=47.77 Aligned_cols=34 Identities=15% Similarity=0.070 Sum_probs=26.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccccceEEEE
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTC 197 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~ 197 (385)
.+++|+|..|.|||||++.+... .......+|+.
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~---~~~~~G~i~~~ 60 (210)
T cd03269 27 EIFGLLGPNGAGKTTTIRMILGI---ILPDSGEVLFD 60 (210)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC---CCCCceEEEEC
Confidence 68999999999999999999874 22345556553
No 278
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=94.58 E-value=0.13 Score=48.95 Aligned_cols=57 Identities=18% Similarity=0.377 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCCCCCCCceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 119 DHMMAAKIEDRTIRLQEIEKDKEKEETVKLLLRDDLRTDDGLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 119 ~~~~~~~i~~~~~~l~~i~~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
++.+..++.+++..++.+....+...... ...+...|+|+|.+++|||||...+.+.
T Consensus 156 ~~~i~~ri~~l~~~L~~~~~~~~~~r~~r--------~~~~~~~ValvG~~NvGKSSLln~L~~~ 212 (351)
T TIGR03156 156 RRLIRERIAQLKKELEKVEKQRERQRRRR--------KRADVPTVALVGYTNAGKSTLFNALTGA 212 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh--------cccCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 34577888888888887765443333321 1134567999999999999999998875
No 279
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=94.56 E-value=0.027 Score=45.69 Aligned_cols=23 Identities=35% Similarity=0.329 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
..-|.|.|.||+|||||+..+..
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHH
Confidence 35688999999999999999985
No 280
>PRK13695 putative NTPase; Provisional
Probab=94.56 E-value=0.032 Score=47.31 Aligned_cols=22 Identities=36% Similarity=0.300 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 038448 162 VIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.|.|+|.+|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998875
No 281
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=94.56 E-value=0.13 Score=48.30 Aligned_cols=53 Identities=23% Similarity=0.259 Sum_probs=45.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCCCCHHHHHHHHHHHhh
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSEDFDIIRVTKSILKSIA 216 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~ 216 (385)
-+..|-|.|..|.|||.+.+++++... -..+|++.-+.|+...++..|+.+..
T Consensus 29 ~PS~~~iyG~sgTGKT~~~r~~l~~~n-----~~~vw~n~~ecft~~~lle~IL~~~~ 81 (438)
T KOG2543|consen 29 IPSIVHIYGHSGTGKTYLVRQLLRKLN-----LENVWLNCVECFTYAILLEKILNKSQ 81 (438)
T ss_pred cceeEEEeccCCCchhHHHHHHHhhcC-----CcceeeehHHhccHHHHHHHHHHHhc
Confidence 456678999999999999999998642 13589999999999999999999985
No 282
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=94.55 E-value=0.033 Score=43.59 Aligned_cols=21 Identities=33% Similarity=0.539 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHhcc
Q 038448 163 IPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 163 i~I~G~gGiGKTtLA~~v~~~ 183 (385)
|+|+|++|+|||||...+.+.
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 789999999999999999974
No 283
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.55 E-value=0.048 Score=48.10 Aligned_cols=34 Identities=18% Similarity=0.186 Sum_probs=26.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccccceEEEE
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTC 197 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~ 197 (385)
.+++|+|..|.|||||.+.+..- .......+|+.
T Consensus 27 e~~~i~G~nGsGKSTLl~~i~G~---~~~~~G~i~~~ 60 (220)
T cd03265 27 EIFGLLGPNGAGKTTTIKMLTTL---LKPTSGRATVA 60 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC---CCCCceEEEEC
Confidence 68999999999999999999873 23345556553
No 284
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=94.55 E-value=0.27 Score=46.14 Aligned_cols=128 Identities=12% Similarity=0.107 Sum_probs=64.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccc-----cccc---------------cccceEEEEecC----------CCCHHHHH
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSDV-----RVHN---------------HFDLKAWTCVSE----------DFDIIRVT 208 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~-----~~~~---------------~F~~~~wv~vs~----------~~~~~~~~ 208 (385)
-...+.++|+.|+||||+|..+.... .... ..+-..++.-.. ... .+-.
T Consensus 20 ~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~-id~i 98 (325)
T PRK08699 20 RPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIK-IDAV 98 (325)
T ss_pred cceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcC-HHHH
Confidence 34678899999999999998765431 0000 001122332210 112 2334
Q ss_pred HHHHHHhhcCCCCC---ccchHHhh--chhhHhhHhhhccCCCCCcEEEEEcCChh-HHhhcCC-CCcccCCCCChhhHH
Q 038448 209 KSILKSIASDQLVD---DHDLNLLQ--KYNDWTNRSRLFEAGAPGSKIVFTTRNLG-VAEKMGP-LPAYPLKELSNDDCL 281 (385)
Q Consensus 209 ~~il~~l~~~~~~~---~~~~~~l~--~~~~w~~l~~~l~~~~~gs~IivTTR~~~-va~~~~~-~~~~~l~~L~~~~a~ 281 (385)
+++.+.+....... .--++... +...-+.+...+.....++.+|++|.+.. +...+.. -..+.+.+++.++..
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~ 178 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEAL 178 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHH
Confidence 45555554332210 00011111 22333334444433334566777777654 4433222 256889999999988
Q ss_pred hhhhcc
Q 038448 282 SVFSPH 287 (385)
Q Consensus 282 ~Lf~~~ 287 (385)
..+...
T Consensus 179 ~~L~~~ 184 (325)
T PRK08699 179 AYLRER 184 (325)
T ss_pred HHHHhc
Confidence 777543
No 285
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=94.55 E-value=0.039 Score=51.72 Aligned_cols=26 Identities=23% Similarity=0.225 Sum_probs=22.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 158 DGLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
....+|+|.|.+|+|||||+..+...
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~~~ 79 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALGMH 79 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999887653
No 286
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=94.55 E-value=0.081 Score=49.36 Aligned_cols=57 Identities=19% Similarity=0.237 Sum_probs=40.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccc----cccceEEEEecCCCCHHHHHHHHHHHhh
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSDVRVHN----HFDLKAWTCVSEDFDIIRVTKSILKSIA 216 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~il~~l~ 216 (385)
.-+++-|+|.+|+|||+|+.+++-...... .=..++||+....|+..++.. +++.++
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g 155 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFG 155 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcC
Confidence 447889999999999999987653221211 113688999888888877654 555554
No 287
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=94.52 E-value=0.043 Score=47.63 Aligned_cols=23 Identities=17% Similarity=0.212 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+|.|+|+.|.||||++..+...
T Consensus 2 GlilI~GptGSGKTTll~~ll~~ 24 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDY 24 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999877653
No 288
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=94.51 E-value=0.027 Score=48.45 Aligned_cols=21 Identities=29% Similarity=0.292 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcc
Q 038448 163 IPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 163 i~I~G~gGiGKTtLA~~v~~~ 183 (385)
|.|.|++|+||||+|+.+...
T Consensus 2 I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999774
No 289
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=94.51 E-value=0.067 Score=45.41 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSDV 184 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~ 184 (385)
-..+-++|++|.|||||.+.+|..+
T Consensus 28 Gef~fl~GpSGAGKSTllkLi~~~e 52 (223)
T COG2884 28 GEFVFLTGPSGAGKSTLLKLIYGEE 52 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhh
Confidence 3678999999999999999999864
No 290
>PHA02244 ATPase-like protein
Probab=94.51 E-value=0.09 Score=49.70 Aligned_cols=36 Identities=17% Similarity=0.206 Sum_probs=26.0
Q ss_pred hhHHHHHHHHhcCCCCCCCCceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 140 KEKEETVKLLLRDDLRTDDGLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 140 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.....+..++... .-|.|+|++|+|||+||+.+...
T Consensus 107 ~~~~ri~r~l~~~--------~PVLL~GppGtGKTtLA~aLA~~ 142 (383)
T PHA02244 107 YETADIAKIVNAN--------IPVFLKGGAGSGKNHIAEQIAEA 142 (383)
T ss_pred HHHHHHHHHHhcC--------CCEEEECCCCCCHHHHHHHHHHH
Confidence 3445555555332 23678999999999999999874
No 291
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=94.50 E-value=0.025 Score=51.05 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 038448 162 VIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.|.++|++|+||||+|+.+...
T Consensus 1 LIvl~G~pGSGKST~a~~La~~ 22 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKK 22 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 3789999999999999998764
No 292
>PRK14532 adenylate kinase; Provisional
Probab=94.50 E-value=0.028 Score=48.24 Aligned_cols=21 Identities=24% Similarity=0.313 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcc
Q 038448 163 IPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 163 i~I~G~gGiGKTtLA~~v~~~ 183 (385)
|.++|++|+||||+|+.+...
T Consensus 3 i~~~G~pGsGKsT~a~~la~~ 23 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEE 23 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999763
No 293
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.49 E-value=0.054 Score=46.09 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+++|+|..|.|||||.+.+..-
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl 48 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQ 48 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcC
Confidence 68999999999999999999863
No 294
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.49 E-value=0.052 Score=47.51 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+++|+|..|.|||||++.++.-
T Consensus 28 ~~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 28 EFVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 68999999999999999999874
No 295
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=94.48 E-value=3.6 Score=39.69 Aligned_cols=79 Identities=8% Similarity=0.053 Sum_probs=48.7
Q ss_pred CcEEEEEcCChhHHhhcC------CCCcccCCCCChhhHHhhhhccccCCCCC------------CCC----ccHHHHHH
Q 038448 248 GSKIVFTTRNLGVAEKMG------PLPAYPLKELSNDDCLSVFSPHSLGEKDF------------STH----PSLKEIGE 305 (385)
Q Consensus 248 gs~IivTTR~~~va~~~~------~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~------------~~~----~~l~~~~~ 305 (385)
-.+||++|-+........ ..+.+.|...+++.|..+...+.-..... ... .....-..
T Consensus 183 IAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld 262 (431)
T PF10443_consen 183 IAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELD 262 (431)
T ss_pred ccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhcccccccccccccccccccccccccccchHHHH
Confidence 347888887765554332 22567899999999999888775332110 000 12333445
Q ss_pred HHHHHcCCChHHHHHHHHHhh
Q 038448 306 KIVKKCNGLPLVAKSLGGLLR 326 (385)
Q Consensus 306 ~i~~~c~glPLAi~~~~~~L~ 326 (385)
..+..+||=-.=+..+++.++
T Consensus 263 ~~i~~LGGRltDLe~lvrRik 283 (431)
T PF10443_consen 263 ECIEPLGGRLTDLEFLVRRIK 283 (431)
T ss_pred HHHHHcCCcHHHHHHHHHHHH
Confidence 677777887777777777664
No 296
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=94.48 E-value=0.031 Score=46.96 Aligned_cols=22 Identities=36% Similarity=0.490 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 038448 162 VIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
+|.|.|..|+||||+|+.+.+.
T Consensus 2 iI~i~G~~GSGKstia~~la~~ 23 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEK 23 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999999763
No 297
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.47 E-value=0.038 Score=51.62 Aligned_cols=26 Identities=27% Similarity=0.273 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 158 DGLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
....++.++|++|+||||++..+...
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~ 137 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHK 137 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 35689999999999999999888764
No 298
>PRK06761 hypothetical protein; Provisional
Probab=94.47 E-value=0.061 Score=49.14 Aligned_cols=23 Identities=30% Similarity=0.315 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
++|.|.|++|+||||+++.++..
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~ 26 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDI 26 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999986
No 299
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.46 E-value=0.11 Score=50.69 Aligned_cols=26 Identities=27% Similarity=0.118 Sum_probs=22.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 158 DGLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
..+.+|.++|.+|+||||++..+...
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~ 118 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARY 118 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 35789999999999999999888754
No 300
>PRK15453 phosphoribulokinase; Provisional
Probab=94.45 E-value=0.036 Score=50.32 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
...+|+|.|.+|+||||+|+.+.+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~ 27 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEK 27 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999998875
No 301
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.44 E-value=0.056 Score=45.96 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+++|+|..|.|||||++.+...
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999863
No 302
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.43 E-value=0.11 Score=48.89 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
..+-|..+|++|.|||-||++|+..
T Consensus 244 PWkgvLm~GPPGTGKTlLAKAvATE 268 (491)
T KOG0738|consen 244 PWKGVLMVGPPGTGKTLLAKAVATE 268 (491)
T ss_pred ccceeeeeCCCCCcHHHHHHHHHHh
Confidence 4577899999999999999999984
No 303
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.41 E-value=0.057 Score=44.23 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+++|+|..|.|||||++.+...
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~ 49 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGE 49 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCC
Confidence 68999999999999999999874
No 304
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.41 E-value=0.14 Score=45.81 Aligned_cols=48 Identities=15% Similarity=0.193 Sum_probs=33.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCCCCHHHHHHH
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSEDFDIIRVTKS 210 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 210 (385)
.-.++.|.|.+|.|||+||.++.... . ..-..++||+... +...+.+.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~-~-~~ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNG-L-QMGEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH-H-HcCCcEEEEEeeC--CHHHHHHH
Confidence 45889999999999999998865431 2 2345678888765 34455554
No 305
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=94.41 E-value=0.036 Score=46.26 Aligned_cols=23 Identities=35% Similarity=0.403 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
++++|+|..|+|||||+..+...
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~ 24 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPA 24 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999998874
No 306
>PRK01184 hypothetical protein; Provisional
Probab=94.40 E-value=0.033 Score=47.60 Aligned_cols=18 Identities=22% Similarity=0.493 Sum_probs=16.6
Q ss_pred eEEEEEcCCCCcHHHHHH
Q 038448 161 SVIPIIGTGRIGKTTLAQ 178 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~ 178 (385)
.+|+|+|++|+||||+++
T Consensus 2 ~~i~l~G~~GsGKsT~a~ 19 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK 19 (184)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 489999999999999987
No 307
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.40 E-value=0.054 Score=47.75 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+++|+|..|.|||||++.+..-
T Consensus 31 ~~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 31 EFVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999874
No 308
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=94.40 E-value=0.049 Score=50.74 Aligned_cols=43 Identities=28% Similarity=0.274 Sum_probs=29.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCCCC
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSEDFD 203 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~ 203 (385)
.-+++-|+|++|+||||||.++... ....-..++||..-..++
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yId~E~~~~ 96 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALD 96 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEcccchhH
Confidence 4579999999999999999887654 222334566776544333
No 309
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.38 E-value=0.05 Score=47.61 Aligned_cols=33 Identities=18% Similarity=0.119 Sum_probs=25.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhccccccccccceEEEE
Q 038448 162 VIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTC 197 (385)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~ 197 (385)
+++|+|..|.|||||++.++.- .......+++.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl---~~~~~G~i~~~ 59 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL---TPPSSGTIRID 59 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC---CCCCccEEEEC
Confidence 8999999999999999999873 23344556553
No 310
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=94.38 E-value=0.061 Score=53.64 Aligned_cols=50 Identities=20% Similarity=0.269 Sum_probs=33.1
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEE
Q 038448 143 EETVKLLLRDDLRTDDGLSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTC 197 (385)
Q Consensus 143 ~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~ 197 (385)
+++.+||..... .....+++.+.|++|+||||.++.+.+. -.|+..-|.+
T Consensus 29 ~eV~~wl~~~~~-~~~~~~iLlLtGP~G~GKtttv~~La~e----lg~~v~Ew~n 78 (519)
T PF03215_consen 29 EEVRSWLEEMFS-GSSPKRILLLTGPSGCGKTTTVKVLAKE----LGFEVQEWIN 78 (519)
T ss_pred HHHHHHHHHHhc-cCCCcceEEEECCCCCCHHHHHHHHHHH----hCCeeEEecC
Confidence 344555543222 2234579999999999999999998874 2355555654
No 311
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=94.37 E-value=0.034 Score=46.22 Aligned_cols=22 Identities=23% Similarity=0.484 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 038448 162 VIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
-|.|+|.+|+|||||+.++.+.
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~ 23 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQG 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999998764
No 312
>PF13245 AAA_19: Part of AAA domain
Probab=94.37 E-value=0.044 Score=39.50 Aligned_cols=23 Identities=22% Similarity=0.163 Sum_probs=16.9
Q ss_pred ceEEEEEcCCCCcHHHHH-HHHhc
Q 038448 160 LSVIPIIGTGRIGKTTLA-QLAYS 182 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA-~~v~~ 182 (385)
-+++.|.|.+|.|||+++ ..+..
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 367888999999999554 44433
No 313
>COG3899 Predicted ATPase [General function prediction only]
Probab=94.37 E-value=0.38 Score=51.19 Aligned_cols=55 Identities=20% Similarity=0.146 Sum_probs=42.4
Q ss_pred CCcccCCCCChhhHHhhhhccccCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHHHHhh
Q 038448 267 LPAYPLKELSNDDCLSVFSPHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVAKSLGGLLR 326 (385)
Q Consensus 267 ~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~c~glPLAi~~~~~~L~ 326 (385)
...+.|.||+..+.-.+......... ....+....|+++..|.|+-+.-+-..|.
T Consensus 211 i~~I~L~PL~~~d~~~lV~~~l~~~~-----~~~~p~~~~i~~kt~GnPfFi~e~lk~l~ 265 (849)
T COG3899 211 ITTITLAPLSRADTNQLVAATLGCTK-----LLPAPLLELIFEKTKGNPFFIEEFLKALY 265 (849)
T ss_pred eeEEecCcCchhhHHHHHHHHhCCcc-----cccchHHHHHHHHhcCCCccHHHHHHHHH
Confidence 36789999999999888776542211 22356788899999999999998888877
No 314
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=94.36 E-value=0.057 Score=47.61 Aligned_cols=33 Identities=18% Similarity=0.274 Sum_probs=25.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccccceEEE
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWT 196 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 196 (385)
.+++|+|..|.|||||.+.++.- .......+++
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl---~~~~~G~i~~ 61 (220)
T cd03263 29 EIFGLLGHNGAGKTTTLKMLTGE---LRPTSGTAYI 61 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC---CCCCCcEEEE
Confidence 58999999999999999999873 2334455544
No 315
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=94.36 E-value=0.049 Score=50.80 Aligned_cols=43 Identities=28% Similarity=0.255 Sum_probs=30.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCCCC
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSEDFD 203 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~ 203 (385)
.-+++-|+|++|+||||||.+++-. ....-..++||+....++
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~ 96 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALD 96 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECccccHH
Confidence 4578889999999999999987654 223334567776554443
No 316
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=94.35 E-value=0.056 Score=48.28 Aligned_cols=23 Identities=26% Similarity=0.392 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+++|+|..|.|||||++.+..-
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~ 50 (236)
T TIGR03864 28 EFVALLGPNGAGKSTLFSLLTRL 50 (236)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999863
No 317
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.35 E-value=0.071 Score=51.62 Aligned_cols=25 Identities=28% Similarity=0.208 Sum_probs=21.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhc
Q 038448 158 DGLSVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
..+.+|.++|.+|+||||++.++..
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3478999999999999999987764
No 318
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=94.34 E-value=0.036 Score=46.41 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 038448 162 VIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
-|+|+|.+|+|||||+..+.+.
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~ 23 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNK 23 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999998765
No 319
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=94.32 E-value=0.059 Score=47.54 Aligned_cols=33 Identities=18% Similarity=0.154 Sum_probs=25.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccccceEEE
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWT 196 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 196 (385)
.+++|+|..|.|||||++.+..- .......+++
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl---~~~~~G~i~~ 59 (222)
T cd03224 27 EIVALLGRNGAGKTTLLKTIMGL---LPPRSGSIRF 59 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC---CCCCCceEEE
Confidence 68999999999999999999873 2334455555
No 320
>PRK14531 adenylate kinase; Provisional
Probab=94.31 E-value=0.035 Score=47.46 Aligned_cols=23 Identities=22% Similarity=0.212 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
..|.|+|++|+||||+++.+...
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~ 25 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAA 25 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 35889999999999999999764
No 321
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.31 E-value=0.037 Score=48.97 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
.+|+|+|++|+|||||-+.+..
T Consensus 30 EfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 30 EFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999864
No 322
>CHL00095 clpC Clp protease ATP binding subunit
Probab=94.31 E-value=0.044 Score=58.21 Aligned_cols=41 Identities=27% Similarity=0.341 Sum_probs=32.4
Q ss_pred hhhhhHHHHHHHHhcCCCCCCCCceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 137 EKDKEKEETVKLLLRDDLRTDDGLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 137 ~~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
+++++.+.++++|..... .-+.++|.+|+|||++|..+...
T Consensus 183 gr~~ei~~~~~~L~r~~~------~n~lL~G~pGvGKTal~~~la~~ 223 (821)
T CHL00095 183 GREKEIERVIQILGRRTK------NNPILIGEPGVGKTAIAEGLAQR 223 (821)
T ss_pred CcHHHHHHHHHHHccccc------CCeEEECCCCCCHHHHHHHHHHH
Confidence 348889999999965432 34569999999999999888764
No 323
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.30 E-value=0.032 Score=49.54 Aligned_cols=22 Identities=27% Similarity=0.450 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 038448 162 VIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.|.|+|++|+||||+|+.+...
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999764
No 324
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=94.30 E-value=0.043 Score=45.27 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
..+|+++|.+|+|||||...+...
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 367999999999999999998764
No 325
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=94.30 E-value=0.091 Score=45.28 Aligned_cols=23 Identities=39% Similarity=0.286 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
..|+|.|..|+||||+++.+.+.
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~ 26 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKL 26 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999875
No 326
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=94.29 E-value=0.046 Score=45.75 Aligned_cols=26 Identities=27% Similarity=0.226 Sum_probs=22.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 158 DGLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
+...+|-+.|.+|.||||+|..++..
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~ 46 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEK 46 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHH
Confidence 45579999999999999999999874
No 327
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=94.29 E-value=0.034 Score=50.96 Aligned_cols=23 Identities=39% Similarity=0.476 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
+.|+|+|-||+||||++..+..-
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~ 23 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAA 23 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHH
Confidence 46899999999999988766543
No 328
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=94.28 E-value=0.037 Score=45.97 Aligned_cols=21 Identities=14% Similarity=0.327 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcc
Q 038448 163 IPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 163 i~I~G~gGiGKTtLA~~v~~~ 183 (385)
|.++|.+|+|||||+..+.+.
T Consensus 3 i~~vG~~~vGKTsli~~l~~~ 23 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYCEG 23 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999998765
No 329
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=94.27 E-value=0.06 Score=47.36 Aligned_cols=34 Identities=21% Similarity=0.032 Sum_probs=26.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccccceEEEE
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTC 197 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~ 197 (385)
.+++|+|..|.|||||.+.+..- .......+|+.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl---~~~~~G~i~~~ 65 (218)
T cd03266 32 EVTGLLGPNGAGKTTTLRMLAGL---LEPDAGFATVD 65 (218)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC---cCCCCceEEEC
Confidence 68999999999999999999873 33445666663
No 330
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.27 E-value=0.06 Score=46.90 Aligned_cols=33 Identities=24% Similarity=0.236 Sum_probs=25.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccccceEEE
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWT 196 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 196 (385)
.+++|+|..|.|||||.+.++.- .......+++
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl---~~p~~G~i~~ 59 (205)
T cd03226 27 EIIALTGKNGAGKTTLAKILAGL---IKESSGSILL 59 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC---CCCCceEEEE
Confidence 58999999999999999999874 2334444544
No 331
>COG1084 Predicted GTPase [General function prediction only]
Probab=94.27 E-value=0.61 Score=43.05 Aligned_cols=55 Identities=20% Similarity=0.202 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCCCCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 038448 121 MMAAKIEDRTIRLQEIEKDKEKEETVKLLLRDDLRTDDGLSVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 121 ~~~~~i~~~~~~l~~i~~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
++++-++++...|+-+ +++.+.|- ..+.-+++.+.|.|.|++-+|||||+..+-.
T Consensus 136 R~aSiik~i~~~L~fL------~~~r~~l~-~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~ 190 (346)
T COG1084 136 RVASIIKKIDDDLEFL------RKARDHLK-KLPAIDPDLPTIVVAGYPNVGKSSLVRKLTT 190 (346)
T ss_pred HHHHHHHHhhHHHHHH------HHHHHHHh-cCCCCCCCCCeEEEecCCCCcHHHHHHHHhc
Confidence 5666666666666544 23333332 2232456889999999999999999999864
No 332
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=94.27 E-value=0.037 Score=50.48 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
++|+|+|.+|+|||||+..+...
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~ 24 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDR 24 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999998875
No 333
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=94.25 E-value=0.032 Score=47.55 Aligned_cols=21 Identities=33% Similarity=0.419 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 038448 162 VIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~ 182 (385)
+|+|+|+.|+||||++..+.+
T Consensus 1 ii~itG~~gsGKst~~~~l~~ 21 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999865
No 334
>PLN02796 D-glycerate 3-kinase
Probab=94.24 E-value=0.042 Score=51.47 Aligned_cols=25 Identities=32% Similarity=0.088 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+-+|+|.|..|+|||||++.+...
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~l 123 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYL 123 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHH
Confidence 5688999999999999999998864
No 335
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=94.22 E-value=0.063 Score=47.32 Aligned_cols=33 Identities=24% Similarity=0.283 Sum_probs=25.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccccceEEE
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWT 196 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 196 (385)
.+++|+|..|.|||||.+.++.- .......+++
T Consensus 32 ~~~~i~G~nGsGKSTLl~~i~G~---~~~~~G~i~~ 64 (221)
T TIGR02211 32 EIVAIVGSSGSGKSTLLHLLGGL---DNPTSGEVLF 64 (221)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC---CCCCCcEEEE
Confidence 58999999999999999999874 2334455555
No 336
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=94.22 E-value=0.062 Score=47.67 Aligned_cols=33 Identities=21% Similarity=0.192 Sum_probs=25.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccccceEEE
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWT 196 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 196 (385)
.+++|+|..|.|||||++.++.- .......+++
T Consensus 37 e~~~i~G~nGsGKSTLl~~i~Gl---~~p~~G~i~~ 69 (228)
T PRK10584 37 ETIALIGESGSGKSTLLAILAGL---DDGSSGEVSL 69 (228)
T ss_pred CEEEEECCCCCCHHHHHHHHHcC---CCCCCeeEEE
Confidence 68999999999999999999873 2333444544
No 337
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.22 E-value=0.064 Score=46.54 Aligned_cols=34 Identities=24% Similarity=0.152 Sum_probs=26.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccccceEEEE
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTC 197 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~ 197 (385)
.+++|+|..|.|||||.+.+... .......+++.
T Consensus 28 e~~~l~G~nGsGKSTLl~~i~G~---~~~~~G~v~~~ 61 (200)
T PRK13540 28 GLLHLKGSNGAGKTTLLKLIAGL---LNPEKGEILFE 61 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC---CCCCCeeEEEC
Confidence 68999999999999999999874 23344556553
No 338
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=94.21 E-value=0.035 Score=53.56 Aligned_cols=26 Identities=23% Similarity=0.194 Sum_probs=23.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 158 DGLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.-.+.|+|+|.+|.|||||++.+...
T Consensus 217 ~~~~~IvI~G~~gsGKTTL~~~La~~ 242 (399)
T PRK08099 217 FFVRTVAILGGESSGKSTLVNKLANI 242 (399)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 45789999999999999999998863
No 339
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=94.21 E-value=0.051 Score=46.54 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
+.|.|+|++|+|||||+..+...
T Consensus 3 r~ivl~Gpsg~GK~tl~~~L~~~ 25 (184)
T smart00072 3 RPIVLSGPSGVGKGTLLAELIQE 25 (184)
T ss_pred cEEEEECCCCCCHHHHHHHHHhc
Confidence 68999999999999999999875
No 340
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=94.21 E-value=0.061 Score=48.18 Aligned_cols=33 Identities=21% Similarity=0.160 Sum_probs=25.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccccceEEE
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWT 196 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 196 (385)
.+++|+|..|.|||||++.+..- .......+++
T Consensus 29 e~~~l~G~nGsGKSTLl~~l~Gl---~~~~~G~i~~ 61 (243)
T TIGR02315 29 EFVAIIGPSGAGKSTLLRCINRL---VEPSSGSILL 61 (243)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC---cCCCccEEEE
Confidence 68999999999999999999873 2233445544
No 341
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=94.20 E-value=0.038 Score=46.61 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
..|.|+|++|+||||+|+.+...
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~ 25 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQA 25 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35788999999999999999864
No 342
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.18 E-value=0.077 Score=45.52 Aligned_cols=23 Identities=35% Similarity=0.232 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
..+.|+|..|.|||||++.+..-
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 68999999999999999988763
No 343
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=94.18 E-value=0.065 Score=47.67 Aligned_cols=33 Identities=18% Similarity=0.125 Sum_probs=25.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccccceEEE
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWT 196 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 196 (385)
.+++|+|..|.|||||.+.+..- .......+|+
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~Gl---~~p~~G~i~~ 59 (232)
T cd03218 27 EIVGLLGPNGAGKTTTFYMIVGL---VKPDSGKILL 59 (232)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC---CCCCCcEEEE
Confidence 58999999999999999999873 2333455555
No 344
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=94.17 E-value=0.063 Score=47.08 Aligned_cols=33 Identities=18% Similarity=0.181 Sum_probs=25.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccccceEEE
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWT 196 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 196 (385)
.+++|+|..|.|||||++.+..- .......+++
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~G~---~~p~~G~i~~ 58 (213)
T cd03235 26 EFLAIVGPNGAGKSTLLKAILGL---LKPTSGSIRV 58 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHcCC---CCCCCCEEEE
Confidence 68999999999999999999874 2223445554
No 345
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.17 E-value=0.038 Score=52.46 Aligned_cols=23 Identities=48% Similarity=0.663 Sum_probs=18.8
Q ss_pred ceEEEEEcCCCCcHHH-HHHHHhc
Q 038448 160 LSVIPIIGTGRIGKTT-LAQLAYS 182 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTt-LA~~v~~ 182 (385)
-++|.+||+.|+|||| ||+....
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar 226 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAAR 226 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHH
Confidence 6999999999999975 7765544
No 346
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=94.17 E-value=0.066 Score=46.91 Aligned_cols=33 Identities=15% Similarity=0.221 Sum_probs=25.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccccceEEE
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWT 196 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 196 (385)
.+++|+|..|.|||||.+.+... .......+++
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~---~~~~~G~v~~ 59 (213)
T cd03301 27 EFVVLLGPSGCGKTTTLRMIAGL---EEPTSGRIYI 59 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC---CCCCceEEEE
Confidence 57999999999999999999874 2233445554
No 347
>PRK13973 thymidylate kinase; Provisional
Probab=94.17 E-value=0.11 Score=45.56 Aligned_cols=23 Identities=26% Similarity=0.271 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
..|+|-|+.|+||||++..++..
T Consensus 4 ~~IviEG~dGsGKtTq~~~l~~~ 26 (213)
T PRK13973 4 RFITFEGGEGAGKSTQIRLLAER 26 (213)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 57899999999999999999875
No 348
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.15 E-value=0.064 Score=47.98 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+++|+|..|.|||||++.+..-
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl 50 (241)
T cd03256 28 EFVALIGPSGAGKSTLLRCLNGL 50 (241)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999873
No 349
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=94.14 E-value=0.16 Score=44.33 Aligned_cols=35 Identities=29% Similarity=0.145 Sum_probs=26.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccccceEEEE
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTC 197 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~ 197 (385)
..|+|=|+-|+||||.++.++.. .+...-.++|..
T Consensus 4 ~fI~iEGiDGaGKTT~~~~L~~~--l~~~g~~v~~tr 38 (208)
T COG0125 4 MFIVIEGIDGAGKTTQAELLKER--LEERGIKVVLTR 38 (208)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEe
Confidence 57899999999999999999985 444433445544
No 350
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.14 E-value=0.19 Score=49.53 Aligned_cols=24 Identities=25% Similarity=0.320 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
-.|++++|+.|+||||++.++...
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~ 279 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAAR 279 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHH
Confidence 479999999999999999888764
No 351
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=94.14 E-value=0.11 Score=49.13 Aligned_cols=57 Identities=19% Similarity=0.142 Sum_probs=40.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccc----cccceEEEEecCCCCHHHHHHHHHHHhh
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSDVRVHN----HFDLKAWTCVSEDFDIIRVTKSILKSIA 216 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~il~~l~ 216 (385)
.-.++-|+|.+|+|||+|+..++-...... .-..++||+....|...++ .+|++.++
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~ 182 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFG 182 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcC
Confidence 457888999999999999987764321111 1136899999998888776 45565553
No 352
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=94.14 E-value=0.042 Score=44.68 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhccc
Q 038448 162 VIPIIGTGRIGKTTLAQLAYSDV 184 (385)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~~ 184 (385)
-|+++|.+|+|||||+..+....
T Consensus 3 ki~~~G~~~~GKstl~~~l~~~~ 25 (161)
T TIGR00231 3 KIVIVGDPNVGKSTLLNRLLGNK 25 (161)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998764
No 353
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=94.13 E-value=0.041 Score=48.29 Aligned_cols=22 Identities=41% Similarity=0.508 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
++|+|.|-||+||||++..+..
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~ 22 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSA 22 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHH
Confidence 4789999999999998866554
No 354
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=94.13 E-value=0.078 Score=49.46 Aligned_cols=49 Identities=16% Similarity=0.154 Sum_probs=32.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCCCCHHHHHHH
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSEDFDIIRVTKS 210 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 210 (385)
.+++...|.||+||||+|.+..-. .......+.-|+.....+..+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~--lA~~g~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVK--LAESGKKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHH--HHHcCCcEEEEEeCCCCchHhhhcc
Confidence 478999999999999999774332 2222244666776666566555543
No 355
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=94.12 E-value=0.095 Score=47.75 Aligned_cols=50 Identities=22% Similarity=0.173 Sum_probs=39.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCCCCHHHHHH
Q 038448 158 DGLSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSEDFDIIRVTK 209 (385)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 209 (385)
+.-+++=|+|+.|.||||+|.+++-. .+..-..++|++.-..+++..+..
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~~--aq~~g~~a~fIDtE~~l~p~r~~~ 107 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVAN--AQKPGGKAAFIDTEHALDPERAKQ 107 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHHH--hhcCCCeEEEEeCCCCCCHHHHHH
Confidence 45588999999999999999887764 444455889999888888876543
No 356
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=94.12 E-value=0.069 Score=46.50 Aligned_cols=33 Identities=21% Similarity=0.201 Sum_probs=25.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccccceEEE
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWT 196 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 196 (385)
.+++|+|..|.|||||.+.+..- .......+++
T Consensus 25 e~~~i~G~nGsGKSTLl~~l~G~---~~~~~G~i~~ 57 (206)
T TIGR03608 25 KMYAIIGESGSGKSTLLNIIGLL---EKFDSGQVYL 57 (206)
T ss_pred cEEEEECCCCCCHHHHHHHHhcC---CCCCCeEEEE
Confidence 58999999999999999999873 2233455554
No 357
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=94.12 E-value=0.04 Score=51.08 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+|.++|.+|+||||+|+.+...
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~ 25 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAK 25 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHH
Confidence 57889999999999999998764
No 358
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=94.11 E-value=0.42 Score=48.40 Aligned_cols=166 Identities=11% Similarity=0.042 Sum_probs=82.3
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccc--------------------cccccceEEEEecCC
Q 038448 142 KEETVKLLLRDDLRTDDGLSVIPIIGTGRIGKTTLAQLAYSDVRV--------------------HNHFDLKAWTCVSED 201 (385)
Q Consensus 142 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--------------------~~~F~~~~wv~vs~~ 201 (385)
.+.+.+++..+. -...+.++|+.|+||||+|+.+.....- ..+++ ++.+..+..
T Consensus 25 ~~~L~~~i~~~~-----~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~d-v~eidaas~ 98 (559)
T PRK05563 25 TKTLKNAIKQGK-----ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMD-VIEIDAASN 98 (559)
T ss_pred HHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCC-eEEeecccc
Confidence 344555554322 2466778999999999999877543110 01122 233333222
Q ss_pred CCHHHHHHHHHHHhhcCCCCC---ccchHHhh--chhhHhhHhhhccCCCCCcEEEE-EcCChhHHhhcC-CCCcccCCC
Q 038448 202 FDIIRVTKSILKSIASDQLVD---DHDLNLLQ--KYNDWTNRSRLFEAGAPGSKIVF-TTRNLGVAEKMG-PLPAYPLKE 274 (385)
Q Consensus 202 ~~~~~~~~~il~~l~~~~~~~---~~~~~~l~--~~~~w~~l~~~l~~~~~gs~Iiv-TTR~~~va~~~~-~~~~~~l~~ 274 (385)
..+ +-.+++...+....... .--+++.. ....+..+...+........+|+ ||....+...+. ....+.+.+
T Consensus 99 ~~v-d~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~SRc~~~~f~~ 177 (559)
T PRK05563 99 NGV-DEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATILSRCQRFDFKR 177 (559)
T ss_pred CCH-HHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHHhHheEEecCC
Confidence 222 23344444433221100 00111111 33456666666654334445554 444333333222 224578888
Q ss_pred CChhhHHhhhhccccCCCCCCCCccHHHHHHHHHHHcCCChHHH
Q 038448 275 LSNDDCLSVFSPHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVA 318 (385)
Q Consensus 275 L~~~~a~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~c~glPLAi 318 (385)
++.++....+...+-... ... -.+....|++.++|-+.-+
T Consensus 178 ~~~~ei~~~L~~i~~~eg-i~i---~~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 178 ISVEDIVERLKYILDKEG-IEY---EDEALRLIARAAEGGMRDA 217 (559)
T ss_pred CCHHHHHHHHHHHHHHcC-CCC---CHHHHHHHHHHcCCCHHHH
Confidence 998888777765542111 111 1345667888888876543
No 359
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.11 E-value=0.073 Score=45.03 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+++|+|..|.|||||.+.+...
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~ 49 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGL 49 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999874
No 360
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=94.11 E-value=0.05 Score=45.69 Aligned_cols=25 Identities=32% Similarity=0.348 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
+...|+|+|.+|+|||||...+...
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcC
Confidence 3456999999999999999999875
No 361
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=94.10 E-value=0.069 Score=47.33 Aligned_cols=33 Identities=21% Similarity=0.091 Sum_probs=25.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccccceEEE
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWT 196 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 196 (385)
.+++|+|..|.|||||.+.+... .......+++
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~G~---~~~~~G~i~~ 66 (225)
T PRK10247 34 EFKLITGPSGCGKSTLLKIVASL---ISPTSGTLLF 66 (225)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc---cCCCCCeEEE
Confidence 68999999999999999999874 2233455554
No 362
>PRK13236 nitrogenase reductase; Reviewed
Probab=94.10 E-value=0.047 Score=50.60 Aligned_cols=25 Identities=36% Similarity=0.583 Sum_probs=21.1
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHh
Q 038448 157 DDGLSVIPIIGTGRIGKTTLAQLAY 181 (385)
Q Consensus 157 ~~~~~vi~I~G~gGiGKTtLA~~v~ 181 (385)
+.+.++|++.|-||+||||+|..+.
T Consensus 3 ~~~~~~~~~~GKGGVGKTt~a~NLA 27 (296)
T PRK13236 3 DENIRQIAFYGKGGIGKSTTSQNTL 27 (296)
T ss_pred CcCceEEEEECCCcCCHHHHHHHHH
Confidence 4577999999999999999876654
No 363
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=94.10 E-value=0.042 Score=45.35 Aligned_cols=22 Identities=23% Similarity=0.530 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 038448 162 VIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
-|.++|.+|+|||||...+.+.
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~~ 24 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQN 24 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3688999999999999988764
No 364
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.10 E-value=0.071 Score=46.44 Aligned_cols=33 Identities=18% Similarity=0.120 Sum_probs=25.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccccceEEE
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWT 196 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 196 (385)
.+++|+|..|.|||||.+.+... .......+++
T Consensus 28 e~~~l~G~nGsGKSTLl~~l~G~---~~p~~G~v~~ 60 (204)
T PRK13538 28 ELVQIEGPNGAGKTSLLRILAGL---ARPDAGEVLW 60 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC---CCCCCcEEEE
Confidence 58999999999999999999874 2223445554
No 365
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=94.10 E-value=0.07 Score=47.92 Aligned_cols=35 Identities=17% Similarity=0.041 Sum_probs=26.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEE
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTC 197 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~ 197 (385)
=.+++|+|+.|+|||||.+.++.- -..-...+++.
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g~---l~p~~G~V~l~ 62 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAGL---LKPKSGEVLLD 62 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc---CCCCCCEEEEC
Confidence 378999999999999999999873 33333445543
No 366
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.09 E-value=0.17 Score=45.16 Aligned_cols=49 Identities=18% Similarity=0.016 Sum_probs=33.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCCCCHHHHHHH
Q 038448 158 DGLSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSEDFDIIRVTKS 210 (385)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 210 (385)
+.-.++.|+|.+|+|||+|+.++.... .+ .=..++|++..++ ...++++
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~-~~-~g~~~~y~~~e~~--~~~~~~~ 71 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGA-LK-QGKKVYVITTENT--SKSYLKQ 71 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHH-Hh-CCCEEEEEEcCCC--HHHHHHH
Confidence 355889999999999999999985431 22 2346778887654 3444444
No 367
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=94.09 E-value=0.043 Score=45.45 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcc
Q 038448 163 IPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 163 i~I~G~gGiGKTtLA~~v~~~ 183 (385)
|.++|.+|+|||||.+.+.+.
T Consensus 3 v~v~G~~~~GKTtli~~l~~~ 23 (164)
T smart00175 3 IILIGDSGVGKSSLLSRFTDG 23 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999999765
No 368
>PRK13974 thymidylate kinase; Provisional
Probab=94.09 E-value=0.13 Score=45.22 Aligned_cols=24 Identities=25% Similarity=0.162 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDV 184 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~ 184 (385)
.+|++.|..|+||||+++.++...
T Consensus 4 ~~i~~eG~dGsGKsT~~~~l~~~l 27 (212)
T PRK13974 4 KFIVLEGIDGCGKTTQIDHLSKWL 27 (212)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999998754
No 369
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.09 E-value=0.067 Score=47.69 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+++|+|..|.|||||++.+..-
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 27 EILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999874
No 370
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=94.09 E-value=0.31 Score=40.73 Aligned_cols=100 Identities=11% Similarity=0.036 Sum_probs=57.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccc----ccc--------------ccccceEEEEecCC---CCHHHHHHHHHHHhhc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSDV----RVH--------------NHFDLKAWTCVSED---FDIIRVTKSILKSIAS 217 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~----~~~--------------~~F~~~~wv~vs~~---~~~~~~~~~il~~l~~ 217 (385)
-...+.++|..|+||+++|..+.... ... ....-..|+.-... ....++ +++...+..
T Consensus 18 l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~i~i~~i-r~i~~~~~~ 96 (162)
T PF13177_consen 18 LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKKSIKIDQI-REIIEFLSL 96 (162)
T ss_dssp --SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSSSBSHHHH-HHHHHHCTS
T ss_pred cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccchhhHHHH-HHHHHHHHH
Confidence 34678999999999999997664321 110 12334556654433 445444 477776655
Q ss_pred CCCCCc---cchHHhh--chhhHhhHhhhccCCCCCcEEEEEcCChh
Q 038448 218 DQLVDD---HDLNLLQ--KYNDWTNRSRLFEAGAPGSKIVFTTRNLG 259 (385)
Q Consensus 218 ~~~~~~---~~~~~l~--~~~~w~~l~~~l~~~~~gs~IivTTR~~~ 259 (385)
...... -.++... ..+.+..+...+-.-..++.+|++|.+..
T Consensus 97 ~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~ 143 (162)
T PF13177_consen 97 SPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPS 143 (162)
T ss_dssp S-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GG
T ss_pred HHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChH
Confidence 443211 1112222 56677778888877677888888887654
No 371
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.07 E-value=0.068 Score=47.82 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+++|+|..|.|||||++.+..-
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl 51 (239)
T cd03296 29 ELVALLGPSGSGKTTLLRLIAGL 51 (239)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999874
No 372
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=94.07 E-value=0.069 Score=47.56 Aligned_cols=33 Identities=21% Similarity=0.211 Sum_probs=25.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccccceEEE
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWT 196 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 196 (385)
.+++|+|..|.|||||++.++.- .......+++
T Consensus 36 e~~~l~G~nGsGKSTLl~~l~Gl---~~~~~G~i~~ 68 (233)
T PRK11629 36 EMMAIVGSSGSGKSTLLHLLGGL---DTPTSGDVIF 68 (233)
T ss_pred cEEEEECCCCCCHHHHHHHHhcC---CCCCceEEEE
Confidence 58999999999999999999874 2333455554
No 373
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=94.06 E-value=0.064 Score=47.30 Aligned_cols=52 Identities=15% Similarity=0.104 Sum_probs=28.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcccc-----ccccccceEEEEecCCCCHHHHHHHHHH
Q 038448 162 VIPIIGTGRIGKTTLAQLAYSDVR-----VHNHFDLKAWTCVSEDFDIIRVTKSILK 213 (385)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~~~-----~~~~F~~~~wv~vs~~~~~~~~~~~il~ 213 (385)
+..|+|++|.||||++..+..... ....-+..+-++...+..+..++..+..
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 789999999999987666554320 0123334444444444455555555554
No 374
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=94.05 E-value=0.044 Score=45.40 Aligned_cols=21 Identities=29% Similarity=0.396 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcc
Q 038448 163 IPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 163 i~I~G~gGiGKTtLA~~v~~~ 183 (385)
|.|+|.+|+|||||+..+.+.
T Consensus 3 i~v~G~~~vGKTsli~~l~~~ 23 (161)
T cd04113 3 FIIIGSSGTGKSCLLHRFVEN 23 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999998765
No 375
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.05 E-value=0.072 Score=46.70 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+++|+|..|.|||||++.+..-
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 27 EFLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999873
No 376
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=94.04 E-value=0.041 Score=45.77 Aligned_cols=24 Identities=29% Similarity=0.445 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+|++|+|..|+|||||...+...
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~ 25 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRK 25 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHH
Confidence 379999999999999999998764
No 377
>PLN02165 adenylate isopentenyltransferase
Probab=94.03 E-value=0.05 Score=50.75 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
-.+|+|+|+.|+||||||..+...
T Consensus 43 g~iivIiGPTGSGKStLA~~LA~~ 66 (334)
T PLN02165 43 DKVVVIMGATGSGKSRLSVDLATR 66 (334)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHH
Confidence 358999999999999999988764
No 378
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=94.03 E-value=0.077 Score=46.92 Aligned_cols=34 Identities=18% Similarity=0.199 Sum_probs=26.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccccceEEEE
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTC 197 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~ 197 (385)
.+++|+|..|.|||||.+.++.- .......+++.
T Consensus 35 e~~~l~G~nGsGKSTLl~~i~G~---~~~~~G~i~~~ 68 (224)
T TIGR02324 35 ECVALSGPSGAGKSTLLKSLYAN---YLPDSGRILVR 68 (224)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC---CCCCCCeEEEe
Confidence 68999999999999999999874 23345556554
No 379
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=94.02 E-value=0.073 Score=46.68 Aligned_cols=33 Identities=21% Similarity=0.203 Sum_probs=26.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccccceEEE
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWT 196 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 196 (385)
.+++|+|..|.|||||.+.++.. .......+|+
T Consensus 25 e~~~i~G~nGsGKSTLl~~l~G~---~~~~~G~i~~ 57 (213)
T TIGR01277 25 EIVAIMGPSGAGKSTLLNLIAGF---IEPASGSIKV 57 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhcC---CCCCCcEEEE
Confidence 68999999999999999999874 2333455655
No 380
>PRK12608 transcription termination factor Rho; Provisional
Probab=94.02 E-value=0.25 Score=46.86 Aligned_cols=67 Identities=19% Similarity=0.158 Sum_probs=44.6
Q ss_pred HHHHHhcCCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccc-cccc-eEEEEecCC-CCHHHHHHHHHHHhhcC
Q 038448 145 TVKLLLRDDLRTDDGLSVIPIIGTGRIGKTTLAQLAYSDVRVHN-HFDL-KAWTCVSED-FDIIRVTKSILKSIASD 218 (385)
Q Consensus 145 l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-~F~~-~~wv~vs~~-~~~~~~~~~il~~l~~~ 218 (385)
+++.+..-. .-..+.|+|.+|+|||||++.+.+. +.. +-+. ++|+.+.+. -.+.++++.+...+...
T Consensus 123 vID~l~PiG-----kGQR~LIvG~pGtGKTTLl~~la~~--i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvas 192 (380)
T PRK12608 123 VVDLVAPIG-----KGQRGLIVAPPRAGKTVLLQQIAAA--VAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYAS 192 (380)
T ss_pred hhhheeecC-----CCceEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEee
Confidence 566665421 1245699999999999999998775 222 2233 467777764 46778888887765543
No 381
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=94.02 E-value=0.044 Score=44.39 Aligned_cols=22 Identities=41% Similarity=0.431 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 038448 162 VIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
-|.|+|.+|+|||||...+...
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~ 23 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGE 23 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCC
Confidence 3789999999999999998765
No 382
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.01 E-value=0.076 Score=45.89 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+++|+|..|.|||||++.+...
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~ 49 (195)
T PRK13541 27 AITYIKGANGCGKSSLLRMIAGI 49 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999874
No 383
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=94.01 E-value=0.076 Score=45.97 Aligned_cols=34 Identities=21% Similarity=0.137 Sum_probs=26.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccccceEEEE
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTC 197 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~ 197 (385)
.+++|+|..|.|||||.+.+... .......+++.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~---~~~~~G~i~~~ 60 (198)
T TIGR01189 27 EALQVTGPNGIGKTTLLRILAGL---LRPDSGEVRWN 60 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC---CCCCccEEEEC
Confidence 68999999999999999999874 23344555553
No 384
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.01 E-value=0.078 Score=48.54 Aligned_cols=26 Identities=23% Similarity=0.224 Sum_probs=23.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 158 DGLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+..+|.|+|.+|.|||||...+.+.
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46799999999999999999998874
No 385
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.01 E-value=0.047 Score=46.11 Aligned_cols=22 Identities=36% Similarity=0.345 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 038448 162 VIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
++.++|++|+||||++..+...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~ 23 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALY 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999999888764
No 386
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=94.01 E-value=0.074 Score=47.30 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+++|+|..|.|||||++.+..-
T Consensus 12 e~~~i~G~nGsGKSTLl~~l~Gl 34 (230)
T TIGR01184 12 EFISLIGHSGCGKSTLLNLISGL 34 (230)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999864
No 387
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=94.00 E-value=0.056 Score=49.08 Aligned_cols=50 Identities=16% Similarity=0.193 Sum_probs=34.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcccccccccc-ceEEEEecCCCC-HHHHHHHHH
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHNHFD-LKAWTCVSEDFD-IIRVTKSIL 212 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~vs~~~~-~~~~~~~il 212 (385)
..++|+|.+|+|||||++.++++ ++.+|. .++++-+.+... +.++..++.
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~~--i~~~~~~~~V~~~iGer~~Ev~e~~~~~~ 121 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELINN--IAKAHGGYSVFAGVGERTREGNDLYHEMK 121 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHHH--HHhcCCCEEEEEEeccCcHHHHHHHHHHH
Confidence 56899999999999999999986 444554 455566666433 344444443
No 388
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=93.99 E-value=0.074 Score=46.62 Aligned_cols=23 Identities=30% Similarity=0.619 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+++|+|..|.|||||.+.+..-
T Consensus 28 ~~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 28 EFVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999874
No 389
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.99 E-value=0.072 Score=47.81 Aligned_cols=55 Identities=13% Similarity=0.133 Sum_probs=34.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecC-----CCCHHHHHHHHHHHhhc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSE-----DFDIIRVTKSILKSIAS 217 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~-----~~~~~~~~~~il~~l~~ 217 (385)
-.+++|||.+|.|||||++.+.. ....-.+.+++.-.+ .....+...+++...+.
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~---L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl 98 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILG---LEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGL 98 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHc---CcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCC
Confidence 36899999999999999999987 444444455544221 11233445555555543
No 390
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=93.98 E-value=0.046 Score=45.49 Aligned_cols=21 Identities=29% Similarity=0.517 Sum_probs=18.4
Q ss_pred EEEEcCCCCcHHHHHHHHhcc
Q 038448 163 IPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 163 i~I~G~gGiGKTtLA~~v~~~ 183 (385)
|.++|.+|+|||||+..+.+.
T Consensus 3 i~vvG~~~vGKTsli~~~~~~ 23 (161)
T cd04124 3 IILLGDSAVGKSKLVERFLMD 23 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 678999999999999887654
No 391
>PRK14974 cell division protein FtsY; Provisional
Probab=93.98 E-value=0.051 Score=51.07 Aligned_cols=25 Identities=28% Similarity=0.175 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
+..+|.++|++|+||||++..+...
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~ 163 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYY 163 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4689999999999999988777653
No 392
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=93.97 E-value=0.046 Score=45.28 Aligned_cols=22 Identities=23% Similarity=0.495 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 038448 162 VIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
-|.|+|.+|+|||||+..+..+
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~ 24 (163)
T cd04136 3 KVVVLGSGGVGKSALTVQFVQG 24 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999887754
No 393
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=93.97 E-value=0.071 Score=49.59 Aligned_cols=22 Identities=32% Similarity=0.394 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
+++.+.|-||+||||+|....-
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~ 23 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALAL 23 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHH
Confidence 6889999999999999966543
No 394
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.97 E-value=0.075 Score=47.64 Aligned_cols=33 Identities=21% Similarity=0.255 Sum_probs=25.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccccceEEE
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWT 196 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 196 (385)
.+++|+|..|.|||||++.+..- .......+++
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl---~~p~~G~i~~ 62 (241)
T PRK14250 30 AIYTIVGPSGAGKSTLIKLINRL---IDPTEGSILI 62 (241)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC---CCCCCcEEEE
Confidence 58999999999999999999873 2233455554
No 395
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=93.97 E-value=0.074 Score=47.67 Aligned_cols=33 Identities=12% Similarity=0.073 Sum_probs=25.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccccceEEE
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWT 196 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 196 (385)
.+++|+|..|.|||||++.++.- .......+++
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G~---~~~~~G~i~~ 61 (242)
T PRK11124 29 ETLVLLGPSGAGKSSLLRVLNLL---EMPRSGTLNI 61 (242)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC---CCCCceEEEE
Confidence 68999999999999999999874 2233455554
No 396
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=93.97 E-value=0.074 Score=48.13 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+++|+|..|.|||||++.+..-
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl 50 (255)
T PRK11248 28 ELLVVLGPSGCGKTTLLNLIAGF 50 (255)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999864
No 397
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.95 E-value=0.054 Score=51.56 Aligned_cols=24 Identities=25% Similarity=0.320 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
-.++.++|+.|+||||++.++...
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 479999999999999999988764
No 398
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=93.95 E-value=0.072 Score=47.51 Aligned_cols=33 Identities=24% Similarity=0.148 Sum_probs=25.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccccceEEE
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWT 196 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 196 (385)
.+++|+|..|.|||||.+.+..- .......+++
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~Gl---~~~~~G~i~~ 59 (236)
T cd03219 27 EIHGLIGPNGAGKTTLFNLISGF---LRPTSGSVLF 59 (236)
T ss_pred cEEEEECCCCCCHHHHHHHHcCC---CCCCCceEEE
Confidence 58999999999999999999873 2233445554
No 399
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=93.94 E-value=0.047 Score=40.67 Aligned_cols=22 Identities=45% Similarity=0.590 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 038448 162 VIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
++.+.|.+|+||||++..+...
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~ 22 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAA 22 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4778999999999999888764
No 400
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=93.93 E-value=0.048 Score=45.48 Aligned_cols=23 Identities=35% Similarity=0.381 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.-|.|+|.+|+|||||+..+...
T Consensus 4 ~kv~vvG~~~~GKTsli~~l~~~ 26 (165)
T cd01864 4 FKIILIGDSNVGKTCVVQRFKSG 26 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 46789999999999999988653
No 401
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=93.92 E-value=0.059 Score=46.10 Aligned_cols=25 Identities=28% Similarity=0.219 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
...++.|.|.+|.||||+|+.+...
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~ 41 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKK 41 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4479999999999999999998864
No 402
>PRK14528 adenylate kinase; Provisional
Probab=93.91 E-value=0.048 Score=46.83 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
+.|.|.|++|+||||+|+.+...
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~ 24 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCER 24 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999998764
No 403
>PRK09183 transposase/IS protein; Provisional
Probab=93.91 E-value=0.044 Score=49.73 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
..+.|+|++|+|||+||..+.+.
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~ 125 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYE 125 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHH
Confidence 45779999999999999999764
No 404
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=93.90 E-value=0.04 Score=45.48 Aligned_cols=19 Identities=32% Similarity=0.296 Sum_probs=17.5
Q ss_pred EEcCCCCcHHHHHHHHhcc
Q 038448 165 IIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 165 I~G~gGiGKTtLA~~v~~~ 183 (385)
|+|+||+||||+|..+...
T Consensus 1 i~G~PgsGK~t~~~~la~~ 19 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKR 19 (151)
T ss_dssp EEESTTSSHHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHh
Confidence 6899999999999999874
No 405
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=93.89 E-value=0.047 Score=44.65 Aligned_cols=21 Identities=33% Similarity=0.504 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcc
Q 038448 163 IPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 163 i~I~G~gGiGKTtLA~~v~~~ 183 (385)
|+|+|.+|+|||||...+...
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 689999999999999999875
No 406
>PRK13768 GTPase; Provisional
Probab=93.89 E-value=0.051 Score=49.14 Aligned_cols=23 Identities=30% Similarity=0.335 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.++.|.|.||+||||++..+...
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~ 25 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDW 25 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHH
Confidence 57899999999999998777653
No 407
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=93.89 E-value=0.047 Score=50.12 Aligned_cols=22 Identities=27% Similarity=0.273 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
++|+|+|-||+||||+|..+..
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~ 23 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAA 23 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHH
Confidence 5789999999999998876654
No 408
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=93.88 E-value=0.077 Score=53.67 Aligned_cols=26 Identities=19% Similarity=0.173 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 158 DGLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
..-.+|.|+|++|+||||+|+.+...
T Consensus 390 ~~g~~Ivl~Gl~GSGKSTia~~La~~ 415 (568)
T PRK05537 390 KQGFTVFFTGLSGAGKSTIAKALMVK 415 (568)
T ss_pred CCCeEEEEECCCCChHHHHHHHHHHH
Confidence 34458899999999999999999874
No 409
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.87 E-value=0.079 Score=47.49 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+++|+|..|.|||||++.++.-
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~ 50 (242)
T cd03295 28 EFLVLIGPSGSGKTTTMKMINRL 50 (242)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999999874
No 410
>PRK02496 adk adenylate kinase; Provisional
Probab=93.87 E-value=0.045 Score=46.81 Aligned_cols=22 Identities=23% Similarity=0.226 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 038448 162 VIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+.|+|++|+||||+|+.+...
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~ 24 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEH 24 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998753
No 411
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.86 E-value=0.085 Score=50.79 Aligned_cols=25 Identities=24% Similarity=0.193 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
...++.++|++|+||||++.++...
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~ 246 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAK 246 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999988753
No 412
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=93.86 E-value=0.079 Score=47.42 Aligned_cols=33 Identities=24% Similarity=0.186 Sum_probs=25.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccccceEEE
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWT 196 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 196 (385)
.+++|+|..|.|||||++.+..- .......+++
T Consensus 28 e~~~l~G~nGsGKSTLl~~l~G~---~~~~~G~i~~ 60 (240)
T PRK09493 28 EVVVIIGPSGSGKSTLLRCINKL---EEITSGDLIV 60 (240)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC---CCCCceEEEE
Confidence 68999999999999999999874 2333455554
No 413
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=93.86 E-value=0.048 Score=49.89 Aligned_cols=22 Identities=41% Similarity=0.501 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
++|+|+|-||+||||++..+..
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~ 23 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTA 23 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHH
Confidence 5788889999999998876654
No 414
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=93.86 E-value=0.052 Score=47.73 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
.+++|+|++|+|||||...+..
T Consensus 32 e~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 32 EFVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999988875
No 415
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=93.85 E-value=0.05 Score=44.74 Aligned_cols=21 Identities=19% Similarity=0.504 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcc
Q 038448 163 IPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 163 i~I~G~gGiGKTtLA~~v~~~ 183 (385)
|.|+|.+|+|||||...+.+.
T Consensus 2 i~i~G~~~~GKTsli~~l~~~ 22 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFVKG 22 (160)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999988754
No 416
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.85 E-value=0.084 Score=46.11 Aligned_cols=23 Identities=30% Similarity=0.354 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+++|+|..|.|||||.+.+...
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G~ 51 (207)
T PRK13539 29 EALVLTGPNGSGKTTLLRLIAGL 51 (207)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999874
No 417
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=93.85 E-value=1.3 Score=46.09 Aligned_cols=59 Identities=22% Similarity=0.271 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHH--hhhhhhHHHHHHHHhcC---CCCCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 038448 124 AKIEDRTIRLQE--IEKDKEKEETVKLLLRD---DLRTDDGLSVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 124 ~~i~~~~~~l~~--i~~~~~~~~l~~~L~~~---~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
.++..+..++.. ++++.....+.+.+... ....+....+...+|+.|||||.||+.+..
T Consensus 480 ~kll~le~~L~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~ 543 (786)
T COG0542 480 EKLLNLERRLKKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAE 543 (786)
T ss_pred HHHHHHHHHHhcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHH
Confidence 333444444432 33466666666665442 222344567888899999999999988765
No 418
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=93.85 E-value=0.044 Score=47.99 Aligned_cols=21 Identities=24% Similarity=0.286 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcc
Q 038448 163 IPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 163 i~I~G~gGiGKTtLA~~v~~~ 183 (385)
|.|+|++|+||||+|+.+...
T Consensus 2 I~i~G~pGsGKsT~a~~La~~ 22 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEK 22 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999998753
No 419
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=93.83 E-value=0.051 Score=44.37 Aligned_cols=22 Identities=32% Similarity=0.401 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHhccc
Q 038448 163 IPIIGTGRIGKTTLAQLAYSDV 184 (385)
Q Consensus 163 i~I~G~gGiGKTtLA~~v~~~~ 184 (385)
|.++|.+|+|||||...+.+..
T Consensus 3 i~~~G~~~~GKStl~~~l~~~~ 24 (159)
T cd00154 3 IVLIGDSGVGKTSLLLRFVDGK 24 (159)
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 7899999999999999987664
No 420
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=93.83 E-value=0.082 Score=47.23 Aligned_cols=33 Identities=18% Similarity=0.167 Sum_probs=25.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccccceEEE
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWT 196 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 196 (385)
.+++|+|..|.|||||++.+... .......+++
T Consensus 48 e~~~i~G~NGsGKSTLl~~i~Gl---~~p~~G~i~~ 80 (236)
T cd03267 48 EIVGFIGPNGAGKTTTLKILSGL---LQPTSGEVRV 80 (236)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC---cCCCceEEEE
Confidence 68999999999999999999873 2234455554
No 421
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=93.82 E-value=0.048 Score=46.44 Aligned_cols=36 Identities=17% Similarity=0.242 Sum_probs=25.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEe
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCV 198 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v 198 (385)
.-+.++|.+|+|||.||..+.+.. +...+ .+.|++.
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~-~~~g~-~v~f~~~ 83 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEA-IRKGY-SVLFITA 83 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH-HHTT---EEEEEH
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHh-ccCCc-ceeEeec
Confidence 568999999999999999998752 22222 3566653
No 422
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=93.82 E-value=0.081 Score=46.85 Aligned_cols=33 Identities=24% Similarity=0.121 Sum_probs=25.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccccceEEE
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWT 196 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 196 (385)
.+++|+|..|.|||||++.+..- .......+|+
T Consensus 49 e~~~i~G~nGsGKSTLl~~l~G~---~~p~~G~i~~ 81 (224)
T cd03220 49 ERIGLIGRNGAGKSTLLRLLAGI---YPPDSGTVTV 81 (224)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC---CCCCceEEEE
Confidence 68999999999999999999874 2233445554
No 423
>PRK11058 GTPase HflX; Provisional
Probab=93.81 E-value=0.22 Score=48.60 Aligned_cols=57 Identities=19% Similarity=0.366 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCCCCCCCceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 119 DHMMAAKIEDRTIRLQEIEKDKEKEETVKLLLRDDLRTDDGLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 119 ~~~~~~~i~~~~~~l~~i~~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
+..+..++.++...|+.+........... ...+...|+|+|.+++|||||...+.+.
T Consensus 164 ~r~i~~ri~~l~~~L~~~~~~r~~~r~~r--------~~~~~p~ValVG~~NaGKSSLlN~Lt~~ 220 (426)
T PRK11058 164 RRLLRNRIVQILSRLERVEKQREQGRRAR--------IKADVPTVSLVGYTNAGKSTLFNRITEA 220 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHh--------hhcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34577888888888877765433222211 1124567999999999999999998764
No 424
>PRK00698 tmk thymidylate kinase; Validated
Probab=93.81 E-value=0.052 Score=47.15 Aligned_cols=23 Identities=30% Similarity=0.268 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+|+|.|+.|+||||+++.+.+.
T Consensus 4 ~~I~ieG~~gsGKsT~~~~L~~~ 26 (205)
T PRK00698 4 MFITIEGIDGAGKSTQIELLKEL 26 (205)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999874
No 425
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=93.80 E-value=0.052 Score=46.10 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
.+++|+|+.|.|||||.+.+..
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhh
Confidence 6899999999999999998863
No 426
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=93.78 E-value=0.14 Score=47.94 Aligned_cols=56 Identities=20% Similarity=0.141 Sum_probs=38.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcccccccc----ccceEEEEecCCCCHHHHHHHHHHHh
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSDVRVHNH----FDLKAWTCVSEDFDIIRVTKSILKSI 215 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~~~il~~l 215 (385)
.-.++.|+|.+|+|||||+..++........ -..++|++....+...++ ..+++.+
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~ 154 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERY 154 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHc
Confidence 4688999999999999999888643212111 135689998887777753 3444444
No 427
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=93.78 E-value=0.087 Score=45.98 Aligned_cols=34 Identities=15% Similarity=0.036 Sum_probs=26.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccccceEEEE
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTC 197 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~ 197 (385)
.+++|+|..|.|||||.+.+..- .......+++.
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~Gl---~~~~~G~i~~~ 60 (208)
T cd03268 27 EIYGFLGPNGAGKTTTMKIILGL---IKPDSGEITFD 60 (208)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC---cCCCceEEEEC
Confidence 68999999999999999999873 23345556653
No 428
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.78 E-value=0.085 Score=46.94 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+++|+|..|.|||||++.+..-
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~G~ 54 (233)
T cd03258 32 EIFGIIGRSGAGKSTLIRCINGL 54 (233)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999874
No 429
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.77 E-value=0.089 Score=44.91 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+++|+|..|.|||||.+.+..-
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~ 49 (182)
T cd03215 27 EIVGIAGLVGNGQTELAEALFGL 49 (182)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999874
No 430
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=93.77 E-value=0.043 Score=50.13 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 038448 162 VIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
+|+|.|..|+|||||++.+..-
T Consensus 1 iigI~G~sGsGKSTl~~~L~~l 22 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSL 22 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999999863
No 431
>PRK09354 recA recombinase A; Provisional
Probab=93.74 E-value=0.081 Score=49.81 Aligned_cols=43 Identities=26% Similarity=0.268 Sum_probs=30.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCCCC
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSEDFD 203 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~ 203 (385)
.-+++-|+|++|+||||||.++... ....-..++||..-..++
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~--~~~~G~~~~yId~E~s~~ 101 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALD 101 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchH
Confidence 4578999999999999999987654 223334567776554443
No 432
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.74 E-value=0.096 Score=44.21 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+++|+|..|.|||||.+.++.-
T Consensus 29 ~~~~l~G~nGsGKstLl~~i~G~ 51 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLLLRL 51 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 68999999999999999999874
No 433
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=93.73 E-value=0.59 Score=43.59 Aligned_cols=112 Identities=12% Similarity=0.062 Sum_probs=60.0
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccc-------------------cccceEEEEecCCC
Q 038448 142 KEETVKLLLRDDLRTDDGLSVIPIIGTGRIGKTTLAQLAYSDVRVHN-------------------HFDLKAWTCVSEDF 202 (385)
Q Consensus 142 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-------------------~F~~~~wv~vs~~~ 202 (385)
...+..+..... .....+.++|++|+||||+|..+.+..--.. ..+....++.+...
T Consensus 10 ~~~l~~~~~~~~----~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~ 85 (325)
T COG0470 10 VKRLLVQALESG----RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLR 85 (325)
T ss_pred HHHHHHHHHhcC----CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccC
Confidence 344555554321 1233589999999999999988765421000 12345556666554
Q ss_pred C---HHHHHHHHHHHhhcCCCC---CccchHHhh--chhhHhhHhhhccCCCCCcEEEEEcCC
Q 038448 203 D---IIRVTKSILKSIASDQLV---DDHDLNLLQ--KYNDWTNRSRLFEAGAPGSKIVFTTRN 257 (385)
Q Consensus 203 ~---~~~~~~~il~~l~~~~~~---~~~~~~~l~--~~~~w~~l~~~l~~~~~gs~IivTTR~ 257 (385)
. ..+..+++.......... ..--++... ..+.-..+...+......+.+|++|..
T Consensus 86 ~~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~ 148 (325)
T COG0470 86 KIDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITND 148 (325)
T ss_pred CCcchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCC
Confidence 4 455666666665544310 111111111 223344455555555667788877763
No 434
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=93.72 E-value=0.094 Score=44.36 Aligned_cols=23 Identities=39% Similarity=0.521 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+++|+|..|.|||||.+.+..-
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~ 51 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGL 51 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 58999999999999999999863
No 435
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=93.71 E-value=0.087 Score=47.75 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+++|+|..|.|||||.+.+..-
T Consensus 39 e~~~I~G~NGsGKSTLlk~l~Gl 61 (257)
T PRK11247 39 QFVAVVGRSGCGKSTLLRLLAGL 61 (257)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999863
No 436
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=93.71 E-value=0.053 Score=47.70 Aligned_cols=23 Identities=22% Similarity=0.195 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
...+.|+|.+|+||||+|+.+-+
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~ 34 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPG 34 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCC
Confidence 46699999999999999998854
No 437
>PRK07952 DNA replication protein DnaC; Validated
Probab=93.71 E-value=0.056 Score=48.46 Aligned_cols=37 Identities=16% Similarity=0.089 Sum_probs=27.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEe
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCV 198 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v 198 (385)
...+.++|.+|+|||+||..+.+.. ...-..++++++
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l--~~~g~~v~~it~ 135 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNEL--LLRGKSVLIITV 135 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEEH
Confidence 3578899999999999999999863 222334556654
No 438
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=93.70 E-value=0.17 Score=45.03 Aligned_cols=48 Identities=21% Similarity=0.175 Sum_probs=30.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCCCCHHHHHHHH
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSEDFDIIRVTKSI 211 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 211 (385)
-.++.|.|.+|.||||||.++.... .+.. ..+++++... +..++++.+
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~-~~~g-~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGF-LQNG-YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HhCC-CcEEEEeCCC--CHHHHHHHH
Confidence 4599999999999999986655431 2222 3456666333 445555554
No 439
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=93.70 E-value=0.091 Score=45.99 Aligned_cols=33 Identities=24% Similarity=0.146 Sum_probs=25.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccccceEEE
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWT 196 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 196 (385)
.+++|+|..|.|||||.+.+..- .......+++
T Consensus 27 ~~~~l~G~nGsGKSTLl~~l~G~---~~~~~G~i~~ 59 (213)
T cd03262 27 EVVVIIGPSGSGKSTLLRCINLL---EEPDSGTIII 59 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC---CCCCCceEEE
Confidence 68999999999999999999873 2233445554
No 440
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.69 E-value=0.09 Score=46.62 Aligned_cols=34 Identities=24% Similarity=0.195 Sum_probs=26.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccccceEEEE
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTC 197 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~ 197 (385)
.+++|+|..|.|||||.+.+..- .......+|+.
T Consensus 30 ~~~~i~G~nGsGKSTLl~~l~G~---~~~~~G~i~~~ 63 (229)
T cd03254 30 ETVAIVGPTGAGKTTLINLLMRF---YDPQKGQILID 63 (229)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC---cCCCCCEEEEC
Confidence 57999999999999999999873 23345666664
No 441
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=93.68 E-value=0.053 Score=49.39 Aligned_cols=23 Identities=39% Similarity=0.475 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
++|+|.|-||+||||++..+..-
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~ 24 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAA 24 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHH
Confidence 57888899999999998776553
No 442
>PRK10908 cell division protein FtsE; Provisional
Probab=93.67 E-value=0.092 Score=46.36 Aligned_cols=33 Identities=24% Similarity=0.286 Sum_probs=25.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccccceEEE
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWT 196 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 196 (385)
.+++|+|..|.|||||.+.+..- .......+++
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G~---~~~~~G~i~~ 61 (222)
T PRK10908 29 EMAFLTGHSGAGKSTLLKLICGI---ERPSAGKIWF 61 (222)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC---CCCCceEEEE
Confidence 68999999999999999999874 2233445554
No 443
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.67 E-value=0.1 Score=43.72 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+++|+|..|.|||||.+.+...
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~ 49 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGL 49 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999874
No 444
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=93.66 E-value=0.052 Score=44.70 Aligned_cols=22 Identities=36% Similarity=0.431 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 038448 162 VIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
++++.|.+|+||||++..+...
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~ 22 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITA 22 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999888754
No 445
>PRK06921 hypothetical protein; Provisional
Probab=93.66 E-value=0.084 Score=48.08 Aligned_cols=38 Identities=18% Similarity=0.119 Sum_probs=28.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcccccccc-ccceEEEEec
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSDVRVHNH-FDLKAWTCVS 199 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-F~~~~wv~vs 199 (385)
..-+.++|.+|+|||+||..+.+. +... -..++|++..
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~--l~~~~g~~v~y~~~~ 155 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANE--LMRKKGVPVLYFPFV 155 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HhhhcCceEEEEEHH
Confidence 467899999999999999999985 3333 3445677653
No 446
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=93.66 E-value=2.8 Score=42.69 Aligned_cols=96 Identities=16% Similarity=0.100 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHhh-------hhhhHHHHHHHHhcCCCCCCCCceEEEEEcCCCCcHHHHHHHHhcccc------cccc
Q 038448 123 AAKIEDRTIRLQEIE-------KDKEKEETVKLLLRDDLRTDDGLSVIPIIGTGRIGKTTLAQLAYSDVR------VHNH 189 (385)
Q Consensus 123 ~~~i~~~~~~l~~i~-------~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~------~~~~ 189 (385)
+..++..+.+|.--. ++.+..+|-+++-.--. .+..-+.+-|.|.+|.|||..+..|.+... --..
T Consensus 379 ~S~l~~ara~Lhls~vp~sLpcRe~E~~~I~~f~~~~i~-~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~ 457 (767)
T KOG1514|consen 379 ASELSKARARLHLSAVPESLPCRENEFSEIEDFLRSFIS-DQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPK 457 (767)
T ss_pred hhHHHHHHHHhHHhhccccccchhHHHHHHHHHHHhhcC-CCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCC
Confidence 455555666553221 27788888887755433 222334889999999999999999987431 1223
Q ss_pred ccceEEEEecCCCCHHHHHHHHHHHhhcCCC
Q 038448 190 FDLKAWTCVSEDFDIIRVTKSILKSIASDQL 220 (385)
Q Consensus 190 F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~ 220 (385)
|+ .+.|+.-.-..+.+++..|..++.+...
T Consensus 458 f~-yveINgm~l~~~~~~Y~~I~~~lsg~~~ 487 (767)
T KOG1514|consen 458 FD-YVEINGLRLASPREIYEKIWEALSGERV 487 (767)
T ss_pred cc-EEEEcceeecCHHHHHHHHHHhcccCcc
Confidence 43 3345544556788999999999987654
No 447
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=93.65 E-value=0.092 Score=46.86 Aligned_cols=33 Identities=24% Similarity=0.238 Sum_probs=25.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccccceEEE
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWT 196 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 196 (385)
.+++|+|..|.|||||++.+..- .......+++
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl---~~~~~G~i~~ 61 (237)
T cd03252 29 EVVGIVGRSGSGKSTLTKLIQRF---YVPENGRVLV 61 (237)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC---cCCCCCEEEE
Confidence 68999999999999999999873 2233445544
No 448
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=93.64 E-value=0.1 Score=44.49 Aligned_cols=33 Identities=18% Similarity=0.166 Sum_probs=25.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccccceEEE
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWT 196 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 196 (385)
.+++|+|..|.|||||.+.++.- .......+++
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~---~~~~~G~v~~ 58 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGL---LKPSSGEILL 58 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC---CCCCCcEEEE
Confidence 68999999999999999999874 2334444444
No 449
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=93.64 E-value=0.057 Score=44.71 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHhccc
Q 038448 163 IPIIGTGRIGKTTLAQLAYSDV 184 (385)
Q Consensus 163 i~I~G~gGiGKTtLA~~v~~~~ 184 (385)
|.++|.+|+|||||...+.+..
T Consensus 2 i~vvG~~~vGKtsl~~~~~~~~ 23 (162)
T PF00071_consen 2 IVVVGDSGVGKTSLINRLINGE 23 (162)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHhhc
Confidence 6899999999999999988753
No 450
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=93.64 E-value=0.093 Score=46.47 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+++|+|..|.|||||.+.+...
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~G~ 54 (228)
T cd03257 32 ETLGLVGESGSGKSTLARAILGL 54 (228)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999874
No 451
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=93.63 E-value=0.058 Score=46.17 Aligned_cols=24 Identities=33% Similarity=0.425 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
...|+|+|.+|+|||||...+..+
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~~ 42 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKDD 42 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 355699999999999999998864
No 452
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.62 E-value=0.09 Score=47.98 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+++|+|..|.|||||.+.+..-
T Consensus 36 e~~~I~G~nGsGKSTLl~~i~Gl 58 (269)
T PRK13648 36 QWTSIVGHNGSGKSTIAKLMIGI 58 (269)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 68999999999999999999863
No 453
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=93.60 E-value=0.39 Score=50.53 Aligned_cols=146 Identities=10% Similarity=0.095 Sum_probs=71.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecC---CC--CHHHHHHHHHHHhhcCCCC--CccchHHhh--
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSE---DF--DIIRVTKSILKSIASDQLV--DDHDLNLLQ-- 230 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~---~~--~~~~~~~~il~~l~~~~~~--~~~~~~~l~-- 230 (385)
.+-+.++|++|.|||+||+.+.+. ....| +.+..+. .+ .....++.++.......+. -.++.+.+-
T Consensus 487 ~~giLL~GppGtGKT~lakalA~e--~~~~f---i~v~~~~l~~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~ 561 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKAVATE--SGANF---IAVRGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPA 561 (733)
T ss_pred CceEEEECCCCCCHHHHHHHHHHh--cCCCE---EEEehHHHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhcc
Confidence 455889999999999999999985 33333 2222111 11 1233445555444332221 122333321
Q ss_pred ---------chhhHhhHhhhccC--CCCCcEEEEEcCChhHHhh--c---CCCCcccCCCCChhhHHhhhhccccCCCCC
Q 038448 231 ---------KYNDWTNRSRLFEA--GAPGSKIVFTTRNLGVAEK--M---GPLPAYPLKELSNDDCLSVFSPHSLGEKDF 294 (385)
Q Consensus 231 ---------~~~~w~~l~~~l~~--~~~gs~IivTTR~~~va~~--~---~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~ 294 (385)
.......+...+.. ...+--||.||........ . .-...+.+...+.++-.++|....- ....
T Consensus 562 r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~-~~~~ 640 (733)
T TIGR01243 562 RGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTR-SMPL 640 (733)
T ss_pred CCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhc-CCCC
Confidence 01112223333332 1223445667765544321 1 1235677888888888888865432 1111
Q ss_pred CCCccHHHHHHHHHHHcCCCh
Q 038448 295 STHPSLKEIGEKIVKKCNGLP 315 (385)
Q Consensus 295 ~~~~~l~~~~~~i~~~c~glP 315 (385)
....+ ...+++.+.|.-
T Consensus 641 ~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 641 AEDVD----LEELAEMTEGYT 657 (733)
T ss_pred CccCC----HHHHHHHcCCCC
Confidence 11122 344667777654
No 454
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=93.60 E-value=0.089 Score=46.34 Aligned_cols=34 Identities=24% Similarity=0.117 Sum_probs=26.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccccceEEEE
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTC 197 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~ 197 (385)
.+++|+|..|.|||||.+.+..- .......+++.
T Consensus 31 ~~~~i~G~nGsGKSTLl~~i~G~---~~~~~G~i~~~ 64 (220)
T cd03245 31 EKVAIIGRVGSGKSTLLKLLAGL---YKPTSGSVLLD 64 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC---cCCCCCeEEEC
Confidence 68999999999999999999873 23334555553
No 455
>PRK00279 adk adenylate kinase; Reviewed
Probab=93.60 E-value=0.052 Score=47.72 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 038448 162 VIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.|.|+|++|+||||+|+.+...
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~ 23 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEK 23 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998753
No 456
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=93.58 E-value=0.071 Score=51.12 Aligned_cols=25 Identities=28% Similarity=0.028 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhc
Q 038448 158 DGLSVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
..+-+|+|.|..|.|||||++.+..
T Consensus 210 ~~PlIIGIsG~qGSGKSTLa~~L~~ 234 (460)
T PLN03046 210 IPPLVIGFSAPQGCGKTTLVFALDY 234 (460)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999998864
No 457
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=93.58 E-value=0.098 Score=46.12 Aligned_cols=34 Identities=15% Similarity=0.073 Sum_probs=26.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccccceEEEE
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTC 197 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~ 197 (385)
.+++|+|..|.|||||.+.+... .......+|+.
T Consensus 31 e~~~i~G~nGsGKSTLl~~l~G~---~~~~~G~i~~~ 64 (221)
T cd03244 31 EKVGIVGRTGSGKSSLLLALFRL---VELSSGSILID 64 (221)
T ss_pred CEEEEECCCCCCHHHHHHHHHcC---CCCCCCEEEEC
Confidence 68999999999999999999873 33445566653
No 458
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=93.58 E-value=0.096 Score=46.78 Aligned_cols=33 Identities=15% Similarity=0.187 Sum_probs=25.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccccceEEE
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWT 196 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 196 (385)
.+++|+|..|.|||||++.+..- .......+++
T Consensus 30 e~~~l~G~nGsGKSTLl~~i~G~---~~~~~G~i~~ 62 (238)
T cd03249 30 KTVALVGSSGCGKSTVVSLLERF---YDPTSGEILL 62 (238)
T ss_pred CEEEEEeCCCCCHHHHHHHHhcc---CCCCCCEEEE
Confidence 68999999999999999999874 2334444444
No 459
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=93.57 E-value=0.12 Score=44.74 Aligned_cols=23 Identities=30% Similarity=0.299 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
+++.|.|.+|.||||+...+...
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~ 41 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEA 41 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHH
T ss_pred eEEEEEECCCCCHHHHHHHHHHH
Confidence 68889999999999999887664
No 460
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=93.56 E-value=0.23 Score=48.29 Aligned_cols=25 Identities=28% Similarity=0.214 Sum_probs=20.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhc
Q 038448 158 DGLSVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
..+.++.++|.+|+||||.|..+..
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~ 121 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAY 121 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHH
Confidence 3478999999999999999766654
No 461
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=93.55 E-value=0.097 Score=46.47 Aligned_cols=33 Identities=21% Similarity=0.122 Sum_probs=25.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccccceEEE
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWT 196 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 196 (385)
.+++|+|..|.|||||++.+..- .......+++
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~---~~~~~G~i~~ 59 (230)
T TIGR03410 27 EVTCVLGRNGVGKTTLLKTLMGL---LPVKSGSIRL 59 (230)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC---CCCCCCEEEE
Confidence 68999999999999999999873 2233445554
No 462
>PRK07429 phosphoribulokinase; Provisional
Probab=93.55 E-value=0.077 Score=49.75 Aligned_cols=26 Identities=23% Similarity=0.212 Sum_probs=23.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 158 DGLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
..+-+|+|.|.+|+||||+++.+..-
T Consensus 6 ~~~~IIgI~G~SGSGKSTla~~L~~l 31 (327)
T PRK07429 6 DRPVLLGVAGDSGCGKTTFLRGLADL 31 (327)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHhH
Confidence 46789999999999999999999863
No 463
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=93.54 E-value=0.06 Score=45.07 Aligned_cols=22 Identities=32% Similarity=0.604 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHhccc
Q 038448 163 IPIIGTGRIGKTTLAQLAYSDV 184 (385)
Q Consensus 163 i~I~G~gGiGKTtLA~~v~~~~ 184 (385)
|.++|.+|+|||||.+++.++.
T Consensus 4 i~liG~~~~GKTsli~~~~~~~ 25 (168)
T cd04177 4 IVVLGAGGVGKSALTVQFVQNV 25 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 7899999999999999987553
No 464
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=93.54 E-value=0.1 Score=45.28 Aligned_cols=34 Identities=18% Similarity=0.185 Sum_probs=26.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccccceEEEE
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTC 197 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~ 197 (385)
.+++|+|..|.|||||.+.+..- .......+++.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~---~~~~~G~i~~~ 60 (201)
T cd03231 27 EALQVTGPNGSGKTTLLRILAGL---SPPLAGRVLLN 60 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC---CCCCCcEEEEC
Confidence 68999999999999999999874 23344555543
No 465
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=93.53 E-value=0.1 Score=46.15 Aligned_cols=33 Identities=21% Similarity=0.170 Sum_probs=25.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccccceEEE
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWT 196 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 196 (385)
.+++|+|..|.|||||.+.+... .......+|+
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~---~~~~~G~i~~ 59 (223)
T TIGR03740 27 SVYGLLGPNGAGKSTLLKMITGI---LRPTSGEIIF 59 (223)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC---CCCCceEEEE
Confidence 58999999999999999999873 2334444444
No 466
>PRK12338 hypothetical protein; Provisional
Probab=93.52 E-value=0.064 Score=49.76 Aligned_cols=24 Identities=33% Similarity=0.246 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
+.+|.|.|.+|+||||+|..+...
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~ 27 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELART 27 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 479999999999999999999774
No 467
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=93.52 E-value=0.061 Score=44.38 Aligned_cols=22 Identities=32% Similarity=0.267 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHhccc
Q 038448 163 IPIIGTGRIGKTTLAQLAYSDV 184 (385)
Q Consensus 163 i~I~G~gGiGKTtLA~~v~~~~ 184 (385)
|+++|.+|+|||||...+....
T Consensus 2 i~iiG~~~~GKssli~~~~~~~ 23 (158)
T cd00878 2 ILILGLDGAGKTTILYKLKLGE 23 (158)
T ss_pred EEEEcCCCCCHHHHHHHHhcCC
Confidence 6899999999999999998763
No 468
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=93.51 E-value=0.11 Score=44.20 Aligned_cols=23 Identities=39% Similarity=0.547 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+++|+|..|.|||||++.+..-
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~ 51 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGD 51 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 57999999999999999999874
No 469
>PRK10867 signal recognition particle protein; Provisional
Probab=93.50 E-value=0.12 Score=50.23 Aligned_cols=25 Identities=32% Similarity=0.278 Sum_probs=20.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhc
Q 038448 158 DGLSVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
..+.+|.++|.+|+||||.+..+..
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHH
Confidence 3578999999999999997766544
No 470
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=93.50 E-value=0.099 Score=47.23 Aligned_cols=33 Identities=18% Similarity=0.138 Sum_probs=25.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccccceEEE
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWT 196 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 196 (385)
.+++|+|..|.|||||++.++.- .......+++
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl---~~~~~G~i~~ 64 (255)
T PRK11300 32 EIVSLIGPNGAGKTTVFNCLTGF---YKPTGGTILL 64 (255)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC---cCCCcceEEE
Confidence 68999999999999999999873 2333445554
No 471
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=93.50 E-value=0.1 Score=47.32 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+++|+|..|.|||||++.++.-
T Consensus 33 e~~~i~G~nGsGKSTLl~~l~Gl 55 (258)
T PRK11701 33 EVLGIVGESGSGKTTLLNALSAR 55 (258)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999874
No 472
>PRK06835 DNA replication protein DnaC; Validated
Probab=93.50 E-value=0.057 Score=50.66 Aligned_cols=37 Identities=14% Similarity=0.135 Sum_probs=27.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEec
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVS 199 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs 199 (385)
.-+.++|.+|+|||+||..+.+.. ...-..++|+++.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l--~~~g~~V~y~t~~ 220 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKEL--LDRGKSVIYRTAD 220 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHH--HHCCCeEEEEEHH
Confidence 568999999999999999998853 2222345666643
No 473
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.50 E-value=0.099 Score=47.73 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+++|+|..|.|||||.+.+..-
T Consensus 51 e~~~l~G~nGsGKSTLl~~L~Gl 73 (269)
T cd03294 51 EIFVIMGLSGSGKSTLLRCINRL 73 (269)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 68999999999999999999874
No 474
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=93.50 E-value=0.063 Score=47.57 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+++|+|..|.|||||++.+..-
T Consensus 27 e~~~i~G~nGsGKSTLl~~i~G~ 49 (227)
T cd03260 27 EITALIGPSGCGKSTLLRLLNRL 49 (227)
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 68999999999999999999873
No 475
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=93.49 E-value=0.067 Score=45.27 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
+-|.|+|.+|+|||||+..+...
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~ 24 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEG 24 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35789999999999999988754
No 476
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=93.48 E-value=0.094 Score=47.59 Aligned_cols=40 Identities=20% Similarity=0.201 Sum_probs=29.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecC
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSE 200 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~ 200 (385)
.-+++.|.|.+|+|||+||.++.... .+ .=..+++++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~-a~-~Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQ-AS-RGNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH-Hh-CCCcEEEEEecC
Confidence 45789999999999999999875532 22 224677888764
No 477
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=93.46 E-value=0.086 Score=48.96 Aligned_cols=27 Identities=26% Similarity=0.260 Sum_probs=23.0
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 157 DDGLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 157 ~~~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.....+|+|+|.+|+|||||+..+...
T Consensus 31 ~~~~~~i~i~G~~G~GKttl~~~l~~~ 57 (300)
T TIGR00750 31 TGNAHRVGITGTPGAGKSTLLEALGME 57 (300)
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 346789999999999999999887664
No 478
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=93.46 E-value=0.065 Score=44.65 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 038448 162 VIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
-|.|+|.+|+|||||...+.+.
T Consensus 4 ki~i~G~~~vGKSsli~~~~~~ 25 (166)
T cd01869 4 KLLLIGDSGVGKSCLLLRFADD 25 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998764
No 479
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=93.45 E-value=0.064 Score=47.11 Aligned_cols=23 Identities=35% Similarity=0.345 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+++|+|..|.|||||.+.++.-
T Consensus 14 e~~~l~G~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 14 EHIGILAAPGSGKTTLTRLLCGL 36 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999874
No 480
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=93.44 E-value=0.11 Score=46.58 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
.+++|+|+.|.|||||.+.+..
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 6899999999999999999987
No 481
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=93.43 E-value=0.067 Score=44.39 Aligned_cols=21 Identities=29% Similarity=0.529 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHhcc
Q 038448 163 IPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 163 i~I~G~gGiGKTtLA~~v~~~ 183 (385)
|.++|.+|+|||+|+..+..+
T Consensus 3 i~vvG~~~~GKtsl~~~l~~~ 23 (164)
T cd04101 3 CAVVGDPAVGKTAFVQMFHSN 23 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999988653
No 482
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=93.41 E-value=0.066 Score=44.73 Aligned_cols=21 Identities=33% Similarity=0.512 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcc
Q 038448 163 IPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 163 i~I~G~gGiGKTtLA~~v~~~ 183 (385)
|.++|.+|+|||||...+.+.
T Consensus 3 i~i~G~~~~GKSsli~~l~~~ 23 (171)
T cd00157 3 IVVVGDGAVGKTCLLISYTTG 23 (171)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 679999999999999998865
No 483
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=93.40 E-value=0.063 Score=45.00 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
+-|.++||.|+||||+.+.+.+.
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~ 25 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKA 25 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHH
Confidence 35789999999999999999864
No 484
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=93.40 E-value=0.068 Score=44.28 Aligned_cols=23 Identities=17% Similarity=0.362 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhccc
Q 038448 162 VIPIIGTGRIGKTTLAQLAYSDV 184 (385)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~~ 184 (385)
-|.|+|.+|+|||||+..+.++.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (163)
T cd01860 3 KLVLLGDSSVGKSSLVLRFVKNE 25 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999988763
No 485
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=93.39 E-value=0.1 Score=47.60 Aligned_cols=23 Identities=39% Similarity=0.567 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+++|+|..|.|||||++.+..-
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~Gl 56 (269)
T PRK11831 34 KITAIMGPSGIGKTTLLRLIGGQ 56 (269)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999864
No 486
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.38 E-value=0.12 Score=45.69 Aligned_cols=42 Identities=29% Similarity=0.193 Sum_probs=28.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCC
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSED 201 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~ 201 (385)
.-.++.|.|.+|+|||+|+.++.... .+..=..++||+...+
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~-~~~~ge~vlyvs~ee~ 59 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNG-LKNFGEKVLYVSFEEP 59 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH-HHHHT--EEEEESSS-
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHh-hhhcCCcEEEEEecCC
Confidence 45799999999999999998765431 2221235678887664
No 487
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=93.37 E-value=0.068 Score=44.71 Aligned_cols=21 Identities=33% Similarity=0.457 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcc
Q 038448 163 IPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 163 i~I~G~gGiGKTtLA~~v~~~ 183 (385)
|.|+|.+|+|||||...+.+.
T Consensus 2 i~ivG~~~vGKTsli~~~~~~ 22 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSE 22 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 679999999999999998765
No 488
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.36 E-value=0.11 Score=46.26 Aligned_cols=33 Identities=18% Similarity=0.184 Sum_probs=25.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccccceEEE
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWT 196 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 196 (385)
.+++|+|..|.|||||++.+..- .......+++
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl---~~p~~G~i~~ 61 (234)
T cd03251 29 ETVALVGPSGSGKSTLVNLIPRF---YDVDSGRILI 61 (234)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc---ccCCCCEEEE
Confidence 58999999999999999999874 2233455554
No 489
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=93.36 E-value=0.069 Score=44.01 Aligned_cols=21 Identities=33% Similarity=0.651 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcc
Q 038448 163 IPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 163 i~I~G~gGiGKTtLA~~v~~~ 183 (385)
|.|+|.+|+|||||...+.+.
T Consensus 3 i~i~G~~~~GKStli~~l~~~ 23 (162)
T cd04123 3 VVLLGEGRVGKTSLVLRYVEN 23 (162)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999888765
No 490
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=93.36 E-value=0.069 Score=47.60 Aligned_cols=22 Identities=41% Similarity=0.510 Sum_probs=18.9
Q ss_pred eEEEEEcC-CCCcHHHHHHHHhc
Q 038448 161 SVIPIIGT-GRIGKTTLAQLAYS 182 (385)
Q Consensus 161 ~vi~I~G~-gGiGKTtLA~~v~~ 182 (385)
++|+|+|. ||+||||++-.+..
T Consensus 2 ~~iai~s~kGGvG~TTltAnLA~ 24 (243)
T PF06564_consen 2 KVIAIVSPKGGVGKTTLTANLAW 24 (243)
T ss_pred cEEEEecCCCCCCHHHHHHHHHH
Confidence 58999998 89999999977654
No 491
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.34 E-value=0.1 Score=45.34 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+++|+|..|.|||||++.+..-
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 34 EMVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred cEEEEECCCCCCHHHHHHHhccc
Confidence 68999999999999999999874
No 492
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=93.34 E-value=0.069 Score=44.55 Aligned_cols=22 Identities=23% Similarity=0.443 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 038448 162 VIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.|.++|.+|+|||||.+.+...
T Consensus 3 kv~~vG~~~vGKTsli~~~~~~ 24 (165)
T cd04140 3 RVVVFGAGGVGKSSLVLRFVKG 24 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999888754
No 493
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=93.32 E-value=0.066 Score=50.46 Aligned_cols=26 Identities=19% Similarity=0.262 Sum_probs=24.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 158 DGLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
..+..++|||++|.|||.+|+.+++.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999986
No 494
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=93.32 E-value=0.12 Score=43.39 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+++|+|..|.|||||++.+..-
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~ 50 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGL 50 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999874
No 495
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.32 E-value=0.11 Score=45.32 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+++|+|..|.|||||.+.+..-
T Consensus 25 e~~~l~G~nGsGKSTLl~~l~gl 47 (211)
T cd03298 25 EITAIVGPSGSGKSTLLNLIAGF 47 (211)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999874
No 496
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=93.31 E-value=0.065 Score=44.33 Aligned_cols=20 Identities=25% Similarity=0.468 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 038448 163 IPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 163 i~I~G~gGiGKTtLA~~v~~ 182 (385)
|+++|.+|+|||||...+.+
T Consensus 2 i~l~G~~g~GKTtL~~~l~~ 21 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTN 21 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhc
Confidence 68999999999999999984
No 497
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=93.31 E-value=0.07 Score=46.17 Aligned_cols=22 Identities=23% Similarity=0.223 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~ 23 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQ 23 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998865
No 498
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=93.31 E-value=0.059 Score=48.62 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 038448 162 VIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
+|+|.|.+|+||||++..+...
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~ 22 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHI 22 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988753
No 499
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.31 E-value=0.07 Score=48.05 Aligned_cols=23 Identities=39% Similarity=0.541 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+++|+|..|+|||||++.+...
T Consensus 26 e~~~i~G~NGsGKSTLlk~L~G~ 48 (246)
T cd03237 26 EVIGILGPNGIGKTTFIKMLAGV 48 (246)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999874
No 500
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.31 E-value=0.11 Score=45.50 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+++|+|..|.|||||.+.+...
T Consensus 38 e~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 38 EALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Confidence 57999999999999999999874
Done!