Query 038448
Match_columns 385
No_of_seqs 346 out of 2233
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 19:24:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038448.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038448hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 4.8E-36 1.6E-40 300.0 18.3 239 137-383 132-472 (549)
2 3sfz_A APAF-1, apoptotic pepti 99.9 3.2E-26 1.1E-30 249.5 17.8 234 139-383 130-453 (1249)
3 1vt4_I APAF-1 related killer D 99.9 1.1E-25 3.8E-30 231.0 13.5 220 136-375 131-436 (1221)
4 1z6t_A APAF-1, apoptotic prote 99.9 6E-23 2E-27 207.3 18.4 228 139-380 130-450 (591)
5 3qfl_A MLA10; coiled-coil, (CC 99.6 3E-16 1E-20 122.6 1.8 63 19-81 19-83 (115)
6 2qen_A Walker-type ATPase; unk 98.8 1.5E-08 5E-13 94.6 10.3 152 161-324 32-248 (350)
7 2fna_A Conserved hypothetical 98.7 2.9E-08 1E-12 92.8 10.2 72 247-324 169-252 (357)
8 1w5s_A Origin recognition comp 98.7 7.6E-08 2.6E-12 92.0 12.7 156 161-321 51-265 (412)
9 1njg_A DNA polymerase III subu 98.7 1E-07 3.6E-12 83.6 12.7 160 161-325 46-231 (250)
10 2chg_A Replication factor C sm 98.6 2.8E-07 9.5E-12 79.8 12.4 158 162-325 40-207 (226)
11 2qby_B CDC6 homolog 3, cell di 98.5 9.8E-07 3.4E-11 83.4 12.9 157 159-320 44-244 (384)
12 1fnn_A CDC6P, cell division co 98.4 3E-06 1E-10 80.1 14.8 154 160-318 44-243 (389)
13 2v1u_A Cell division control p 98.4 1.6E-06 5.5E-11 81.8 12.8 167 140-316 26-243 (387)
14 1hqc_A RUVB; extended AAA-ATPa 98.4 1.5E-07 5.1E-12 87.0 5.4 154 160-325 38-214 (324)
15 2qby_A CDC6 homolog 1, cell di 98.4 8E-07 2.8E-11 83.8 10.3 155 159-318 44-241 (386)
16 1sxj_B Activator 1 37 kDa subu 98.4 1.1E-06 3.9E-11 80.8 9.6 157 162-324 44-212 (323)
17 1iqp_A RFCS; clamp loader, ext 98.0 1.6E-05 5.6E-10 73.1 9.3 157 161-323 47-213 (327)
18 3bos_A Putative DNA replicatio 98.0 6.7E-06 2.3E-10 72.0 5.5 156 160-324 52-219 (242)
19 2chq_A Replication factor C sm 97.7 0.0001 3.5E-09 67.4 9.3 157 161-322 39-204 (319)
20 2z4s_A Chromosomal replication 97.7 6.2E-05 2.1E-09 72.5 7.5 149 160-320 130-304 (440)
21 1jr3_A DNA polymerase III subu 97.7 0.00025 8.5E-09 66.4 11.3 158 161-323 39-222 (373)
22 1sxj_D Activator 1 41 kDa subu 97.5 0.00039 1.3E-08 64.5 9.8 173 139-322 43-235 (353)
23 1jbk_A CLPB protein; beta barr 97.5 0.00014 4.7E-09 60.9 5.9 38 140-183 29-66 (195)
24 1a5t_A Delta prime, HOLB; zinc 97.5 0.0019 6.6E-08 59.6 14.2 150 160-320 24-203 (334)
25 3te6_A Regulatory protein SIR3 97.4 0.00057 2E-08 62.5 9.7 77 139-218 26-108 (318)
26 3syl_A Protein CBBX; photosynt 97.3 0.0012 4.2E-08 60.0 10.9 128 158-288 65-217 (309)
27 3pfi_A Holliday junction ATP-d 97.2 0.0012 4.1E-08 60.9 9.2 153 159-322 54-227 (338)
28 3h4m_A Proteasome-activating n 97.2 0.0011 3.6E-08 59.7 8.2 154 159-322 50-231 (285)
29 1sxj_A Activator 1 95 kDa subu 97.1 0.0019 6.5E-08 63.4 10.5 152 159-322 76-253 (516)
30 1l8q_A Chromosomal replication 97.1 0.0015 5E-08 60.0 8.5 143 160-316 37-202 (324)
31 1sxj_E Activator 1 40 kDa subu 97.1 0.0024 8.1E-08 59.3 9.8 87 234-323 150-238 (354)
32 1d2n_A N-ethylmaleimide-sensit 97.0 0.0039 1.3E-07 55.6 10.3 143 158-314 62-229 (272)
33 3pvs_A Replication-associated 96.9 0.0032 1.1E-07 60.6 9.8 157 159-325 49-218 (447)
34 3n70_A Transport activator; si 96.9 0.003 1E-07 50.6 8.0 23 161-183 25-47 (145)
35 2qz4_A Paraplegin; AAA+, SPG7, 96.9 0.0075 2.6E-07 53.1 11.2 150 159-316 38-215 (262)
36 1in4_A RUVB, holliday junction 96.8 0.0066 2.3E-07 56.0 10.4 52 269-324 174-225 (334)
37 2gno_A DNA polymerase III, gam 96.8 0.0041 1.4E-07 56.6 8.7 127 160-288 18-152 (305)
38 3eie_A Vacuolar protein sortin 96.8 0.015 5.2E-07 53.2 12.7 151 160-321 51-227 (322)
39 3uk6_A RUVB-like 2; hexameric 96.8 0.0081 2.8E-07 55.9 10.9 50 268-321 252-302 (368)
40 1sxj_C Activator 1 40 kDa subu 96.7 0.011 3.9E-07 54.4 11.0 150 163-318 49-208 (340)
41 1xwi_A SKD1 protein; VPS4B, AA 96.7 0.014 4.9E-07 53.4 11.5 153 159-321 44-222 (322)
42 3d8b_A Fidgetin-like protein 1 96.6 0.02 6.8E-07 53.3 12.3 156 159-323 116-296 (357)
43 2p65_A Hypothetical protein PF 96.6 0.0017 5.8E-08 53.8 4.5 39 139-183 28-66 (187)
44 2w58_A DNAI, primosome compone 96.5 0.0032 1.1E-07 53.3 5.9 36 161-198 55-90 (202)
45 4b4t_J 26S protease regulatory 96.5 0.016 5.5E-07 54.5 10.9 147 159-315 181-354 (405)
46 3u61_B DNA polymerase accessor 96.5 0.022 7.4E-07 52.1 11.5 147 160-319 48-213 (324)
47 2qp9_X Vacuolar protein sortin 96.4 0.012 4E-07 54.8 9.4 151 160-321 84-260 (355)
48 1rz3_A Hypothetical protein rb 96.4 0.0048 1.6E-07 52.4 5.8 37 143-182 8-44 (201)
49 3lw7_A Adenylate kinase relate 96.3 0.002 6.7E-08 53.0 3.1 20 161-180 2-21 (179)
50 3ec2_A DNA replication protein 96.3 0.0034 1.1E-07 52.2 4.4 24 160-183 38-61 (180)
51 3c8u_A Fructokinase; YP_612366 96.3 0.0036 1.2E-07 53.4 4.6 25 159-183 21-45 (208)
52 4b4t_K 26S protease regulatory 96.2 0.012 4.2E-07 55.9 8.2 25 159-183 205-229 (428)
53 1gvn_B Zeta; postsegregational 96.2 0.0058 2E-07 55.1 5.7 27 157-183 30-56 (287)
54 3kb2_A SPBC2 prophage-derived 96.1 0.0028 9.5E-08 52.0 3.1 23 161-183 2-24 (173)
55 1qhx_A CPT, protein (chloramph 96.1 0.0028 9.5E-08 52.5 3.0 23 161-183 4-26 (178)
56 2p5t_B PEZT; postsegregational 96.1 0.0052 1.8E-07 54.2 4.9 28 156-183 28-55 (253)
57 1zp6_A Hypothetical protein AT 96.1 0.0032 1.1E-07 52.7 3.4 24 160-183 9-32 (191)
58 1ly1_A Polynucleotide kinase; 96.1 0.0032 1.1E-07 52.1 3.2 22 161-182 3-24 (181)
59 3co5_A Putative two-component 96.1 0.0028 9.5E-08 50.7 2.8 22 162-183 29-50 (143)
60 4b4t_L 26S protease subunit RP 96.1 0.027 9.1E-07 53.7 9.9 147 159-315 214-387 (437)
61 2zan_A Vacuolar protein sortin 96.0 0.048 1.6E-06 52.3 11.7 25 159-183 166-190 (444)
62 1kgd_A CASK, peripheral plasma 96.0 0.0038 1.3E-07 52.0 3.2 23 161-183 6-28 (180)
63 3vaa_A Shikimate kinase, SK; s 96.0 0.0035 1.2E-07 53.1 3.0 24 160-183 25-48 (199)
64 1kag_A SKI, shikimate kinase I 96.0 0.0032 1.1E-07 51.8 2.6 23 161-183 5-27 (173)
65 1odf_A YGR205W, hypothetical 3 95.9 0.006 2.1E-07 55.1 4.6 26 158-183 29-54 (290)
66 1ex7_A Guanylate kinase; subst 95.9 0.0038 1.3E-07 52.4 2.9 23 161-183 2-24 (186)
67 3trf_A Shikimate kinase, SK; a 95.8 0.0045 1.5E-07 51.6 3.1 24 160-183 5-28 (185)
68 3vfd_A Spastin; ATPase, microt 95.8 0.035 1.2E-06 52.2 9.7 155 160-323 148-327 (389)
69 2rhm_A Putative kinase; P-loop 95.8 0.0054 1.8E-07 51.3 3.5 25 159-183 4-28 (193)
70 1nks_A Adenylate kinase; therm 95.8 0.0048 1.6E-07 51.6 3.2 23 161-183 2-24 (194)
71 3t61_A Gluconokinase; PSI-biol 95.8 0.0041 1.4E-07 52.7 2.7 24 160-183 18-41 (202)
72 3uie_A Adenylyl-sulfate kinase 95.8 0.0063 2.2E-07 51.5 3.8 25 159-183 24-48 (200)
73 3tr0_A Guanylate kinase, GMP k 95.7 0.0053 1.8E-07 52.0 3.2 23 161-183 8-30 (205)
74 4gp7_A Metallophosphoesterase; 95.7 0.0052 1.8E-07 50.7 3.0 23 160-182 9-31 (171)
75 1knq_A Gluconate kinase; ALFA/ 95.7 0.0077 2.6E-07 49.6 4.0 23 160-182 8-30 (175)
76 4b4t_H 26S protease regulatory 95.7 0.026 8.8E-07 54.0 7.9 147 159-315 242-415 (467)
77 2cvh_A DNA repair and recombin 95.7 0.013 4.3E-07 50.1 5.4 44 160-208 20-63 (220)
78 1kht_A Adenylate kinase; phosp 95.7 0.0056 1.9E-07 51.1 3.0 23 161-183 4-26 (192)
79 4eun_A Thermoresistant glucoki 95.7 0.0064 2.2E-07 51.5 3.4 25 159-183 28-52 (200)
80 1uf9_A TT1252 protein; P-loop, 95.6 0.0069 2.4E-07 51.1 3.5 25 158-182 6-30 (203)
81 1ukz_A Uridylate kinase; trans 95.6 0.0076 2.6E-07 51.0 3.8 26 158-183 13-38 (203)
82 2bdt_A BH3686; alpha-beta prot 95.6 0.0067 2.3E-07 50.7 3.4 22 161-182 3-24 (189)
83 3t15_A Ribulose bisphosphate c 95.6 0.0071 2.4E-07 54.7 3.7 26 158-183 34-59 (293)
84 3iij_A Coilin-interacting nucl 95.6 0.0057 1.9E-07 50.7 2.8 25 159-183 10-34 (180)
85 3a00_A Guanylate kinase, GMP k 95.6 0.0056 1.9E-07 51.2 2.8 23 161-183 2-24 (186)
86 3tau_A Guanylate kinase, GMP k 95.6 0.0073 2.5E-07 51.5 3.6 24 160-183 8-31 (208)
87 3asz_A Uridine kinase; cytidin 95.6 0.0073 2.5E-07 51.5 3.6 24 159-182 5-28 (211)
88 1tev_A UMP-CMP kinase; ploop, 95.6 0.0068 2.3E-07 50.7 3.2 23 161-183 4-26 (196)
89 2qt1_A Nicotinamide riboside k 95.6 0.0083 2.8E-07 51.0 3.8 25 159-183 20-44 (207)
90 1zuh_A Shikimate kinase; alpha 95.6 0.0067 2.3E-07 49.7 3.0 26 158-183 5-30 (168)
91 2jaq_A Deoxyguanosine kinase; 95.6 0.0065 2.2E-07 51.3 3.0 22 162-183 2-23 (205)
92 2kjq_A DNAA-related protein; s 95.5 0.0049 1.7E-07 49.7 2.1 38 161-200 37-74 (149)
93 3tqc_A Pantothenate kinase; bi 95.5 0.03 1E-06 51.1 7.6 26 157-182 89-114 (321)
94 2qor_A Guanylate kinase; phosp 95.5 0.0058 2E-07 52.0 2.6 25 159-183 11-35 (204)
95 1n0w_A DNA repair protein RAD5 95.5 0.024 8.1E-07 49.2 6.7 48 160-207 24-75 (243)
96 2c95_A Adenylate kinase 1; tra 95.5 0.0077 2.6E-07 50.5 3.3 24 160-183 9-32 (196)
97 1via_A Shikimate kinase; struc 95.5 0.006 2.1E-07 50.4 2.6 23 161-183 5-27 (175)
98 1ye8_A Protein THEP1, hypothet 95.5 0.0075 2.6E-07 50.2 3.2 22 162-183 2-23 (178)
99 2j41_A Guanylate kinase; GMP, 95.5 0.0084 2.9E-07 50.7 3.6 23 161-183 7-29 (207)
100 1y63_A LMAJ004144AAA protein; 95.5 0.009 3.1E-07 49.9 3.7 24 159-182 9-32 (184)
101 2ze6_A Isopentenyl transferase 95.5 0.0071 2.4E-07 53.4 3.2 23 161-183 2-24 (253)
102 2if2_A Dephospho-COA kinase; a 95.5 0.0071 2.4E-07 51.2 3.0 22 161-182 2-23 (204)
103 2iyv_A Shikimate kinase, SK; t 95.4 0.0063 2.2E-07 50.6 2.5 23 161-183 3-25 (184)
104 1xjc_A MOBB protein homolog; s 95.4 0.0088 3E-07 49.3 3.3 25 159-183 3-27 (169)
105 1cke_A CK, MSSA, protein (cyti 95.4 0.0075 2.6E-07 52.0 3.0 22 161-182 6-27 (227)
106 1lvg_A Guanylate kinase, GMP k 95.4 0.007 2.4E-07 51.3 2.8 22 161-182 5-26 (198)
107 2cdn_A Adenylate kinase; phosp 95.4 0.0096 3.3E-07 50.3 3.7 26 158-183 18-43 (201)
108 1jjv_A Dephospho-COA kinase; P 95.4 0.0089 3E-07 50.7 3.4 22 161-182 3-24 (206)
109 2bbw_A Adenylate kinase 4, AK4 95.4 0.0087 3E-07 52.5 3.4 23 160-182 27-49 (246)
110 3a4m_A L-seryl-tRNA(SEC) kinas 95.4 0.0088 3E-07 53.0 3.4 24 160-183 4-27 (260)
111 1qf9_A UMP/CMP kinase, protein 95.4 0.011 3.8E-07 49.3 3.8 24 160-183 6-29 (194)
112 3cm0_A Adenylate kinase; ATP-b 95.4 0.0088 3E-07 49.7 3.2 22 161-182 5-26 (186)
113 1e6c_A Shikimate kinase; phosp 95.3 0.0074 2.5E-07 49.5 2.6 23 161-183 3-25 (173)
114 2bwj_A Adenylate kinase 5; pho 95.3 0.0085 2.9E-07 50.4 3.0 23 161-183 13-35 (199)
115 3umf_A Adenylate kinase; rossm 95.3 0.01 3.5E-07 51.1 3.4 26 158-183 27-52 (217)
116 2yvu_A Probable adenylyl-sulfa 95.3 0.012 4E-07 49.1 3.8 25 159-183 12-36 (186)
117 2plr_A DTMP kinase, probable t 95.3 0.0093 3.2E-07 50.6 3.2 23 161-183 5-27 (213)
118 1uj2_A Uridine-cytidine kinase 95.2 0.011 3.6E-07 52.2 3.4 25 158-182 20-44 (252)
119 3pxi_A Negative regulator of g 95.2 0.023 8E-07 58.4 6.4 45 139-183 497-544 (758)
120 2pbr_A DTMP kinase, thymidylat 95.2 0.01 3.4E-07 49.6 3.1 22 162-183 2-23 (195)
121 1znw_A Guanylate kinase, GMP k 95.2 0.011 3.6E-07 50.4 3.2 23 161-183 21-43 (207)
122 3tlx_A Adenylate kinase 2; str 95.2 0.016 5.6E-07 50.7 4.5 25 159-183 28-52 (243)
123 2vli_A Antibiotic resistance p 95.2 0.0074 2.5E-07 50.0 2.2 24 160-183 5-28 (183)
124 2vhj_A Ntpase P4, P4; non- hyd 95.2 0.02 6.7E-07 52.2 5.0 51 161-216 124-181 (331)
125 2pt5_A Shikimate kinase, SK; a 95.2 0.01 3.6E-07 48.4 3.0 22 162-183 2-23 (168)
126 1rj9_A FTSY, signal recognitio 95.2 0.013 4.6E-07 53.1 3.9 25 159-183 101-125 (304)
127 3ney_A 55 kDa erythrocyte memb 95.2 0.011 3.9E-07 49.9 3.2 25 159-183 18-42 (197)
128 3aez_A Pantothenate kinase; tr 95.2 0.013 4.3E-07 53.5 3.7 25 158-182 88-112 (312)
129 3fwy_A Light-independent proto 95.1 0.012 4.2E-07 53.7 3.6 25 158-182 46-70 (314)
130 1nn5_A Similar to deoxythymidy 95.1 0.012 4.2E-07 50.0 3.4 24 160-183 9-32 (215)
131 1aky_A Adenylate kinase; ATP:A 95.1 0.012 4E-07 50.6 3.3 24 160-183 4-27 (220)
132 2hf9_A Probable hydrogenase ni 95.1 0.015 5.3E-07 49.9 4.0 25 159-183 37-61 (226)
133 2onk_A Molybdate/tungstate ABC 95.1 0.02 6.7E-07 50.1 4.6 22 161-182 25-46 (240)
134 1z6g_A Guanylate kinase; struc 95.1 0.01 3.5E-07 51.1 2.8 22 161-182 24-45 (218)
135 4b4t_I 26S protease regulatory 95.1 0.035 1.2E-06 52.5 6.5 146 159-314 215-387 (437)
136 3tif_A Uncharacterized ABC tra 95.1 0.018 6.1E-07 50.2 4.3 34 161-197 32-65 (235)
137 2wwf_A Thymidilate kinase, put 95.0 0.013 4.4E-07 49.8 3.3 25 159-183 9-33 (212)
138 2f6r_A COA synthase, bifunctio 95.0 0.014 4.9E-07 52.3 3.7 24 158-181 73-96 (281)
139 2jeo_A Uridine-cytidine kinase 95.0 0.015 5.1E-07 50.9 3.7 24 159-182 24-47 (245)
140 3pxg_A Negative regulator of g 95.0 0.017 5.9E-07 55.8 4.5 39 139-183 186-224 (468)
141 1ixz_A ATP-dependent metallopr 95.0 0.034 1.2E-06 48.8 6.1 21 163-183 52-72 (254)
142 2pcj_A ABC transporter, lipopr 95.0 0.019 6.6E-07 49.6 4.3 33 161-196 31-63 (224)
143 1gtv_A TMK, thymidylate kinase 95.0 0.007 2.4E-07 51.6 1.4 23 161-183 1-23 (214)
144 1zd8_A GTP:AMP phosphotransfer 95.0 0.013 4.4E-07 50.6 3.1 24 160-183 7-30 (227)
145 2z0h_A DTMP kinase, thymidylat 94.9 0.013 4.5E-07 49.1 3.1 22 162-183 2-23 (197)
146 1htw_A HI0065; nucleotide-bind 94.9 0.016 5.4E-07 47.2 3.4 23 161-183 34-56 (158)
147 2grj_A Dephospho-COA kinase; T 94.9 0.016 5.4E-07 48.8 3.5 25 158-182 10-34 (192)
148 2wsm_A Hydrogenase expression/ 94.9 0.023 7.8E-07 48.6 4.6 25 159-183 29-53 (221)
149 1v5w_A DMC1, meiotic recombina 94.9 0.072 2.5E-06 49.2 8.2 56 159-215 121-180 (343)
150 1zak_A Adenylate kinase; ATP:A 94.9 0.013 4.5E-07 50.4 3.0 24 160-183 5-28 (222)
151 2z43_A DNA repair and recombin 94.9 0.037 1.3E-06 50.6 6.2 55 160-215 107-165 (324)
152 4e22_A Cytidylate kinase; P-lo 94.9 0.014 4.8E-07 51.4 3.2 23 160-182 27-49 (252)
153 3gfo_A Cobalt import ATP-bindi 94.9 0.021 7E-07 51.1 4.3 22 161-182 35-56 (275)
154 1s96_A Guanylate kinase, GMP k 94.9 0.015 5.1E-07 50.1 3.2 24 160-183 16-39 (219)
155 1lv7_A FTSH; alpha/beta domain 94.9 0.013 4.3E-07 51.7 2.8 23 161-183 46-68 (257)
156 1b0u_A Histidine permease; ABC 94.9 0.021 7.3E-07 50.6 4.3 22 161-182 33-54 (262)
157 4a74_A DNA repair and recombin 94.8 0.016 5.4E-07 49.9 3.3 43 161-203 26-72 (231)
158 3fb4_A Adenylate kinase; psych 94.8 0.014 4.9E-07 49.8 3.1 22 162-183 2-23 (216)
159 2x8a_A Nuclear valosin-contain 94.8 0.013 4.5E-07 52.4 2.8 21 163-183 47-67 (274)
160 2v54_A DTMP kinase, thymidylat 94.8 0.015 5.1E-07 49.1 3.0 23 161-183 5-27 (204)
161 2pez_A Bifunctional 3'-phospho 94.8 0.017 5.9E-07 47.7 3.4 23 160-182 5-27 (179)
162 1sq5_A Pantothenate kinase; P- 94.8 0.038 1.3E-06 50.2 5.9 24 159-182 79-102 (308)
163 3cf0_A Transitional endoplasmi 94.8 0.016 5.4E-07 52.5 3.4 25 159-183 48-72 (301)
164 2ehv_A Hypothetical protein PH 94.8 0.015 5.3E-07 50.6 3.2 21 161-181 31-51 (251)
165 4g1u_C Hemin import ATP-bindin 94.8 0.025 8.6E-07 50.3 4.6 33 161-196 38-70 (266)
166 1tue_A Replication protein E1; 94.8 0.02 6.9E-07 48.5 3.7 24 160-183 58-81 (212)
167 1ofh_A ATP-dependent HSL prote 94.8 0.032 1.1E-06 50.3 5.4 24 160-183 50-73 (310)
168 2i3b_A HCR-ntpase, human cance 94.7 0.015 5.1E-07 48.9 2.8 23 161-183 2-24 (189)
169 1vht_A Dephospho-COA kinase; s 94.7 0.019 6.6E-07 49.1 3.6 23 160-182 4-26 (218)
170 3bh0_A DNAB-like replicative h 94.7 0.045 1.5E-06 49.9 6.2 51 161-215 69-119 (315)
171 2i1q_A DNA repair and recombin 94.7 0.046 1.6E-06 49.9 6.3 55 160-215 98-166 (322)
172 3dl0_A Adenylate kinase; phosp 94.7 0.016 5.5E-07 49.5 3.1 22 162-183 2-23 (216)
173 2f1r_A Molybdopterin-guanine d 94.7 0.011 3.7E-07 48.9 1.9 23 161-183 3-25 (171)
174 1iy2_A ATP-dependent metallopr 94.7 0.045 1.5E-06 48.8 6.1 21 163-183 76-96 (278)
175 3hws_A ATP-dependent CLP prote 94.7 0.047 1.6E-06 50.7 6.5 25 159-183 50-74 (363)
176 3b9p_A CG5977-PA, isoform A; A 94.7 0.017 6E-07 51.9 3.4 152 160-322 54-233 (297)
177 1m7g_A Adenylylsulfate kinase; 94.7 0.019 6.6E-07 48.9 3.5 24 160-183 25-48 (211)
178 1mv5_A LMRA, multidrug resista 94.7 0.027 9.4E-07 49.3 4.5 22 161-182 29-50 (243)
179 2ged_A SR-beta, signal recogni 94.7 0.028 9.6E-07 46.7 4.4 25 159-183 47-71 (193)
180 2cbz_A Multidrug resistance-as 94.7 0.022 7.5E-07 49.7 3.8 23 161-183 32-54 (237)
181 1ji0_A ABC transporter; ATP bi 94.7 0.026 9E-07 49.3 4.3 33 161-196 33-65 (240)
182 3lnc_A Guanylate kinase, GMP k 94.6 0.012 4E-07 51.0 2.0 21 161-181 28-48 (231)
183 2olj_A Amino acid ABC transpor 94.6 0.026 9E-07 50.0 4.3 22 161-182 51-72 (263)
184 2ff7_A Alpha-hemolysin translo 94.6 0.027 9.2E-07 49.5 4.3 33 161-196 36-68 (247)
185 1sgw_A Putative ABC transporte 94.6 0.024 8.2E-07 48.6 3.8 33 161-196 36-68 (214)
186 3nbx_X ATPase RAVA; AAA+ ATPas 94.6 0.043 1.5E-06 53.4 6.0 54 122-183 9-64 (500)
187 1zu4_A FTSY; GTPase, signal re 94.6 0.045 1.5E-06 50.0 5.9 26 158-183 103-128 (320)
188 1g6h_A High-affinity branched- 94.6 0.028 9.5E-07 49.7 4.3 33 161-196 34-66 (257)
189 2v3c_C SRP54, signal recogniti 94.6 0.027 9.2E-07 53.8 4.5 26 158-183 97-122 (432)
190 2px0_A Flagellar biosynthesis 94.6 0.022 7.6E-07 51.5 3.7 25 159-183 104-128 (296)
191 2ixe_A Antigen peptide transpo 94.6 0.028 9.5E-07 50.1 4.3 22 161-182 46-67 (271)
192 3hr8_A Protein RECA; alpha and 94.5 0.042 1.4E-06 50.9 5.5 42 160-203 61-102 (356)
193 1vpl_A ABC transporter, ATP-bi 94.5 0.029 9.8E-07 49.6 4.3 22 161-182 42-63 (256)
194 2www_A Methylmalonic aciduria 94.5 0.029 1E-06 51.9 4.5 25 158-182 72-96 (349)
195 1np6_A Molybdopterin-guanine d 94.5 0.021 7.1E-07 47.3 3.1 25 159-183 5-29 (174)
196 2pze_A Cystic fibrosis transme 94.5 0.03 1E-06 48.5 4.3 23 161-183 35-57 (229)
197 2ga8_A Hypothetical 39.9 kDa p 94.5 0.04 1.4E-06 50.8 5.3 26 158-183 22-47 (359)
198 3nwj_A ATSK2; P loop, shikimat 94.5 0.017 5.7E-07 50.9 2.6 22 161-182 49-70 (250)
199 3b9q_A Chloroplast SRP recepto 94.5 0.023 8E-07 51.5 3.6 25 159-183 99-123 (302)
200 1pzn_A RAD51, DNA repair and r 94.4 0.047 1.6E-06 50.5 5.7 45 159-203 130-178 (349)
201 3p32_A Probable GTPase RV1496/ 94.4 0.046 1.6E-06 50.7 5.7 25 158-182 77-101 (355)
202 3ake_A Cytidylate kinase; CMP 94.4 0.021 7.2E-07 48.3 3.1 21 162-182 4-24 (208)
203 3be4_A Adenylate kinase; malar 94.4 0.018 6.2E-07 49.3 2.7 23 161-183 6-28 (217)
204 1cr0_A DNA primase/helicase; R 94.4 0.057 1.9E-06 48.6 6.1 51 161-215 36-87 (296)
205 3dm5_A SRP54, signal recogniti 94.4 0.047 1.6E-06 52.0 5.7 24 159-182 99-122 (443)
206 2yz2_A Putative ABC transporte 94.4 0.032 1.1E-06 49.6 4.3 22 161-182 34-55 (266)
207 3e70_C DPA, signal recognition 94.4 0.027 9.2E-07 51.7 3.9 26 158-183 127-152 (328)
208 2qtf_A Protein HFLX, GTP-bindi 94.4 0.059 2E-06 50.2 6.2 26 158-183 177-202 (364)
209 2xxa_A Signal recognition part 94.4 0.047 1.6E-06 52.1 5.7 26 158-183 98-123 (433)
210 1vma_A Cell division protein F 94.4 0.028 9.4E-07 51.1 3.9 26 158-183 102-127 (306)
211 2zr9_A Protein RECA, recombina 94.3 0.034 1.2E-06 51.5 4.5 42 160-203 61-102 (349)
212 3lda_A DNA repair protein RAD5 94.3 0.072 2.5E-06 50.2 6.7 56 160-216 178-237 (400)
213 3d3q_A TRNA delta(2)-isopenten 94.3 0.023 7.9E-07 52.2 3.2 23 161-183 8-30 (340)
214 4fcw_A Chaperone protein CLPB; 94.3 0.029 9.8E-07 50.7 3.8 25 159-183 46-70 (311)
215 2xb4_A Adenylate kinase; ATP-b 94.3 0.023 7.9E-07 48.9 3.0 22 162-183 2-23 (223)
216 2qgz_A Helicase loader, putati 94.3 0.024 8.1E-07 51.6 3.2 24 160-183 152-175 (308)
217 3b85_A Phosphate starvation-in 94.3 0.02 6.8E-07 48.9 2.6 22 161-182 23-44 (208)
218 1e4v_A Adenylate kinase; trans 94.3 0.024 8.1E-07 48.4 3.0 22 162-183 2-23 (214)
219 2ihy_A ABC transporter, ATP-bi 94.2 0.036 1.2E-06 49.6 4.3 33 161-196 48-80 (279)
220 2dr3_A UPF0273 protein PH0284; 94.2 0.033 1.1E-06 48.3 4.0 38 161-200 24-61 (247)
221 3sr0_A Adenylate kinase; phosp 94.2 0.025 8.5E-07 48.2 3.1 22 162-183 2-23 (206)
222 3zvl_A Bifunctional polynucleo 94.2 0.028 9.7E-07 53.4 3.7 26 158-183 256-281 (416)
223 2w0m_A SSO2452; RECA, SSPF, un 94.2 0.026 9E-07 48.4 3.2 37 161-199 24-60 (235)
224 1u94_A RECA protein, recombina 94.2 0.039 1.3E-06 51.2 4.5 43 159-203 62-104 (356)
225 1ak2_A Adenylate kinase isoenz 94.2 0.029 9.8E-07 48.7 3.4 24 160-183 16-39 (233)
226 2e87_A Hypothetical protein PH 94.1 0.55 1.9E-05 43.4 12.4 26 158-183 165-190 (357)
227 3r20_A Cytidylate kinase; stru 94.1 0.028 9.7E-07 48.8 3.3 24 160-183 9-32 (233)
228 1oix_A RAS-related protein RAB 94.1 0.027 9.4E-07 47.0 3.1 24 160-183 29-52 (191)
229 2zej_A Dardarin, leucine-rich 94.1 0.026 8.8E-07 46.8 2.9 22 162-183 4-25 (184)
230 1ltq_A Polynucleotide kinase; 94.1 0.027 9.3E-07 50.8 3.2 22 161-182 3-24 (301)
231 1yrb_A ATP(GTP)binding protein 94.1 0.036 1.2E-06 48.7 4.0 25 158-182 12-36 (262)
232 3a8t_A Adenylate isopentenyltr 94.1 0.035 1.2E-06 50.9 3.9 24 160-183 40-63 (339)
233 2wji_A Ferrous iron transport 94.1 0.032 1.1E-06 45.3 3.3 23 161-183 4-26 (165)
234 2d2e_A SUFC protein; ABC-ATPas 94.0 0.029 9.9E-07 49.3 3.2 22 161-182 30-51 (250)
235 2og2_A Putative signal recogni 94.0 0.032 1.1E-06 51.8 3.6 25 159-183 156-180 (359)
236 3kl4_A SRP54, signal recogniti 94.0 0.055 1.9E-06 51.5 5.3 25 159-183 96-120 (433)
237 2dyk_A GTP-binding protein; GT 94.0 0.034 1.2E-06 44.5 3.3 23 161-183 2-24 (161)
238 3crm_A TRNA delta(2)-isopenten 94.0 0.029 1E-06 51.1 3.2 23 161-183 6-28 (323)
239 2bjv_A PSP operon transcriptio 94.0 0.038 1.3E-06 48.8 3.9 23 161-183 30-52 (265)
240 1a7j_A Phosphoribulokinase; tr 93.9 0.018 6.1E-07 52.0 1.7 24 159-182 4-27 (290)
241 2qi9_C Vitamin B12 import ATP- 93.9 0.044 1.5E-06 48.1 4.2 23 161-183 27-49 (249)
242 4edh_A DTMP kinase, thymidylat 93.9 0.069 2.4E-06 45.7 5.3 23 161-183 7-29 (213)
243 2r44_A Uncharacterized protein 93.9 0.11 3.9E-06 47.3 7.1 37 139-183 33-69 (331)
244 2r62_A Cell division protease 93.9 0.016 5.4E-07 51.3 1.2 22 162-183 46-67 (268)
245 2zu0_C Probable ATP-dependent 93.9 0.032 1.1E-06 49.6 3.2 23 161-183 47-69 (267)
246 1nlf_A Regulatory protein REPA 93.9 0.031 1.1E-06 49.9 3.2 22 161-182 31-52 (279)
247 2ghi_A Transport protein; mult 93.8 0.031 1.1E-06 49.4 3.1 23 161-183 47-69 (260)
248 3exa_A TRNA delta(2)-isopenten 93.8 0.037 1.3E-06 50.2 3.5 23 161-183 4-26 (322)
249 2f9l_A RAB11B, member RAS onco 93.8 0.031 1.1E-06 46.9 2.9 24 160-183 5-28 (199)
250 2lkc_A Translation initiation 93.8 0.056 1.9E-06 44.0 4.4 26 158-183 6-31 (178)
251 3foz_A TRNA delta(2)-isopenten 93.8 0.04 1.4E-06 49.8 3.7 25 159-183 9-33 (316)
252 2j37_W Signal recognition part 93.7 0.071 2.4E-06 51.8 5.6 25 158-182 99-123 (504)
253 2eyu_A Twitching motility prot 93.7 0.038 1.3E-06 49.0 3.3 22 161-182 26-47 (261)
254 2v9p_A Replication protein E1; 93.7 0.035 1.2E-06 50.3 3.2 22 161-182 127-148 (305)
255 2ce2_X GTPase HRAS; signaling 93.7 0.036 1.2E-06 44.4 2.9 22 162-183 5-26 (166)
256 2nzj_A GTP-binding protein REM 93.7 0.039 1.3E-06 44.8 3.1 24 160-183 4-27 (175)
257 2nq2_C Hypothetical ABC transp 93.7 0.035 1.2E-06 48.9 3.0 23 161-183 32-54 (253)
258 3nh6_A ATP-binding cassette SU 93.6 0.041 1.4E-06 49.9 3.5 22 161-182 81-102 (306)
259 2c9o_A RUVB-like 1; hexameric 93.6 0.069 2.4E-06 51.3 5.4 24 160-183 63-86 (456)
260 1svi_A GTP-binding protein YSX 93.6 0.051 1.8E-06 45.1 3.9 26 158-183 21-46 (195)
261 2wjg_A FEOB, ferrous iron tran 93.6 0.048 1.6E-06 45.0 3.6 25 159-183 6-30 (188)
262 1q3t_A Cytidylate kinase; nucl 93.6 0.042 1.4E-06 47.7 3.4 25 158-182 14-38 (236)
263 3fvq_A Fe(3+) IONS import ATP- 93.6 0.057 2E-06 50.0 4.4 22 161-182 31-52 (359)
264 2pjz_A Hypothetical protein ST 93.6 0.056 1.9E-06 47.9 4.2 23 161-183 31-53 (263)
265 2vp4_A Deoxynucleoside kinase; 93.5 0.039 1.3E-06 47.8 3.0 25 158-182 18-42 (230)
266 3geh_A MNME, tRNA modification 93.5 0.42 1.4E-05 45.9 10.5 52 121-183 196-247 (462)
267 4eaq_A DTMP kinase, thymidylat 93.5 0.042 1.4E-06 47.6 3.2 25 159-183 25-49 (229)
268 2yhs_A FTSY, cell division pro 93.5 0.046 1.6E-06 52.7 3.7 43 158-203 291-333 (503)
269 2qm8_A GTPase/ATPase; G protei 93.4 0.11 3.7E-06 47.8 6.0 24 159-182 54-77 (337)
270 3pqc_A Probable GTP-binding pr 93.4 0.059 2E-06 44.6 3.9 27 158-184 21-47 (195)
271 3pxi_A Negative regulator of g 93.4 0.064 2.2E-06 55.1 4.9 39 139-183 186-224 (758)
272 3end_A Light-independent proto 93.4 0.048 1.6E-06 49.3 3.6 26 158-183 39-64 (307)
273 3sop_A Neuronal-specific septi 93.4 0.041 1.4E-06 49.0 3.0 21 162-182 4-24 (270)
274 4b4t_M 26S protease regulatory 93.4 0.045 1.5E-06 52.1 3.4 147 158-314 213-386 (434)
275 1z2a_A RAS-related protein RAB 93.4 0.052 1.8E-06 43.6 3.4 24 160-183 5-28 (168)
276 4hlc_A DTMP kinase, thymidylat 93.3 0.083 2.8E-06 44.9 4.8 23 161-183 3-25 (205)
277 1nrj_B SR-beta, signal recogni 93.3 0.052 1.8E-06 46.1 3.5 26 158-183 10-35 (218)
278 3con_A GTPase NRAS; structural 93.3 0.043 1.5E-06 45.4 2.9 23 161-183 22-44 (190)
279 1xp8_A RECA protein, recombina 93.3 0.068 2.3E-06 49.8 4.5 42 160-203 74-115 (366)
280 3q72_A GTP-binding protein RAD 93.3 0.043 1.5E-06 44.2 2.8 22 162-183 4-25 (166)
281 1u8z_A RAS-related protein RAL 93.3 0.045 1.5E-06 43.9 2.9 23 161-183 5-27 (168)
282 2gj8_A MNME, tRNA modification 93.3 0.048 1.7E-06 44.6 3.1 23 161-183 5-27 (172)
283 3tui_C Methionine import ATP-b 93.3 0.069 2.3E-06 49.6 4.4 22 161-182 55-76 (366)
284 4tmk_A Protein (thymidylate ki 93.3 0.1 3.6E-06 44.5 5.3 23 161-183 4-26 (213)
285 2ocp_A DGK, deoxyguanosine kin 93.3 0.051 1.7E-06 47.3 3.4 23 161-183 3-25 (241)
286 1z08_A RAS-related protein RAB 93.2 0.058 2E-06 43.5 3.5 24 160-183 6-29 (170)
287 2bbs_A Cystic fibrosis transme 93.2 0.05 1.7E-06 49.0 3.3 23 161-183 65-87 (290)
288 2erx_A GTP-binding protein DI- 93.2 0.05 1.7E-06 43.9 3.1 23 161-183 4-26 (172)
289 2qmh_A HPR kinase/phosphorylas 93.2 0.05 1.7E-06 45.8 3.1 23 161-183 35-57 (205)
290 1c1y_A RAS-related protein RAP 93.2 0.048 1.6E-06 43.8 2.9 22 162-183 5-26 (167)
291 1svm_A Large T antigen; AAA+ f 93.2 0.053 1.8E-06 50.7 3.5 24 159-182 168-191 (377)
292 1ls1_A Signal recognition part 93.1 0.054 1.9E-06 48.9 3.5 25 159-183 97-121 (295)
293 1z47_A CYSA, putative ABC-tran 93.1 0.075 2.6E-06 49.2 4.4 22 161-182 42-63 (355)
294 1kao_A RAP2A; GTP-binding prot 93.1 0.049 1.7E-06 43.6 2.9 23 161-183 4-26 (167)
295 3q85_A GTP-binding protein REM 93.1 0.065 2.2E-06 43.2 3.7 22 161-182 3-24 (169)
296 1nij_A Hypothetical protein YJ 93.1 0.048 1.6E-06 49.8 3.1 25 159-183 3-27 (318)
297 1ek0_A Protein (GTP-binding pr 93.1 0.05 1.7E-06 43.8 2.9 23 162-184 5-27 (170)
298 1m7b_A RND3/RHOE small GTP-bin 93.1 0.049 1.7E-06 44.9 2.9 25 159-183 6-30 (184)
299 1fzq_A ADP-ribosylation factor 93.1 0.064 2.2E-06 44.2 3.6 25 159-183 15-39 (181)
300 2yyz_A Sugar ABC transporter, 93.1 0.078 2.7E-06 49.2 4.4 22 161-182 30-51 (359)
301 1z0j_A RAB-22, RAS-related pro 93.0 0.051 1.8E-06 43.8 2.9 23 161-183 7-29 (170)
302 1um8_A ATP-dependent CLP prote 93.0 0.049 1.7E-06 50.9 3.1 24 160-183 72-95 (376)
303 2it1_A 362AA long hypothetical 93.0 0.079 2.7E-06 49.2 4.4 22 161-182 30-51 (362)
304 3io5_A Recombination and repai 93.0 0.11 3.7E-06 47.2 5.1 42 162-205 30-73 (333)
305 1g29_1 MALK, maltose transport 93.0 0.079 2.7E-06 49.4 4.4 22 161-182 30-51 (372)
306 1qvr_A CLPB protein; coiled co 93.0 0.067 2.3E-06 55.8 4.4 141 138-286 175-343 (854)
307 1v43_A Sugar-binding transport 93.0 0.08 2.7E-06 49.4 4.4 22 161-182 38-59 (372)
308 3rlf_A Maltose/maltodextrin im 93.0 0.08 2.7E-06 49.4 4.4 22 161-182 30-51 (381)
309 2fn4_A P23, RAS-related protei 93.0 0.075 2.6E-06 43.3 3.8 25 159-183 8-32 (181)
310 3tw8_B RAS-related protein RAB 93.0 0.051 1.8E-06 44.3 2.8 25 159-183 8-32 (181)
311 3d31_A Sulfate/molybdate ABC t 92.9 0.064 2.2E-06 49.6 3.7 22 161-182 27-48 (348)
312 2cxx_A Probable GTP-binding pr 92.9 0.056 1.9E-06 44.6 3.0 22 162-183 3-24 (190)
313 3ihw_A Centg3; RAS, centaurin, 92.9 0.054 1.8E-06 44.9 2.9 25 159-183 19-43 (184)
314 1g16_A RAS-related protein SEC 92.9 0.056 1.9E-06 43.6 2.9 23 161-183 4-26 (170)
315 1wms_A RAB-9, RAB9, RAS-relate 92.9 0.056 1.9E-06 44.0 2.9 25 159-183 6-30 (177)
316 1ky3_A GTP-binding protein YPT 92.9 0.067 2.3E-06 43.6 3.4 25 159-183 7-31 (182)
317 4a1f_A DNAB helicase, replicat 92.8 0.15 5.1E-06 46.8 6.0 53 161-217 47-99 (338)
318 1r6b_X CLPA protein; AAA+, N-t 92.8 0.097 3.3E-06 53.8 5.2 140 139-286 192-360 (758)
319 3c5c_A RAS-like protein 12; GD 92.8 0.057 1.9E-06 44.8 2.9 25 159-183 20-44 (187)
320 3kta_A Chromosome segregation 92.8 0.063 2.2E-06 44.3 3.2 22 161-182 27-48 (182)
321 1r2q_A RAS-related protein RAB 92.8 0.059 2E-06 43.3 2.9 23 161-183 7-29 (170)
322 1r8s_A ADP-ribosylation factor 92.8 0.058 2E-06 43.3 2.8 21 163-183 3-23 (164)
323 4bas_A ADP-ribosylation factor 92.7 0.068 2.3E-06 44.4 3.3 28 157-184 14-41 (199)
324 2zts_A Putative uncharacterize 92.7 0.071 2.4E-06 46.2 3.5 48 161-211 31-78 (251)
325 3t1o_A Gliding protein MGLA; G 92.7 0.058 2E-06 44.7 2.8 24 160-183 14-37 (198)
326 1p5z_B DCK, deoxycytidine kina 92.7 0.043 1.5E-06 48.5 2.1 25 159-183 23-47 (263)
327 3iev_A GTP-binding protein ERA 92.7 0.068 2.3E-06 48.5 3.4 28 156-183 6-33 (308)
328 1f6b_A SAR1; gtpases, N-termin 92.7 0.05 1.7E-06 45.6 2.4 23 161-183 26-48 (198)
329 1m2o_B GTP-binding protein SAR 92.6 0.061 2.1E-06 44.7 2.9 23 161-183 24-46 (190)
330 4dsu_A GTPase KRAS, isoform 2B 92.6 0.062 2.1E-06 44.2 2.9 24 161-184 5-28 (189)
331 2aka_B Dynamin-1; fusion prote 92.6 0.16 5.4E-06 45.5 5.9 27 158-184 24-50 (299)
332 2hxs_A RAB-26, RAS-related pro 92.6 0.099 3.4E-06 42.5 4.1 25 159-183 5-29 (178)
333 1z0f_A RAB14, member RAS oncog 92.6 0.063 2.2E-06 43.6 2.9 26 159-184 14-39 (179)
334 2qu8_A Putative nucleolar GTP- 92.6 0.085 2.9E-06 45.3 3.8 26 158-183 27-52 (228)
335 1ojl_A Transcriptional regulat 92.6 0.085 2.9E-06 47.8 4.0 23 161-183 26-48 (304)
336 3lv8_A DTMP kinase, thymidylat 92.6 0.15 5.1E-06 44.3 5.3 24 160-183 27-50 (236)
337 3eph_A TRNA isopentenyltransfe 92.6 0.064 2.2E-06 50.3 3.1 22 161-182 3-24 (409)
338 2bme_A RAB4A, RAS-related prot 92.6 0.064 2.2E-06 44.1 2.9 25 159-183 9-33 (186)
339 1mh1_A RAC1; GTP-binding, GTPa 92.6 0.065 2.2E-06 43.9 2.9 23 161-183 6-28 (186)
340 1cp2_A CP2, nitrogenase iron p 92.5 0.071 2.4E-06 47.1 3.3 23 161-183 2-24 (269)
341 2iwr_A Centaurin gamma 1; ANK 92.5 0.051 1.8E-06 44.4 2.2 23 161-183 8-30 (178)
342 3m6a_A ATP-dependent protease 92.5 0.06 2E-06 53.0 3.0 25 159-183 107-131 (543)
343 1oxx_K GLCV, glucose, ABC tran 92.5 0.065 2.2E-06 49.6 3.1 22 161-182 32-53 (353)
344 2y8e_A RAB-protein 6, GH09086P 92.5 0.066 2.3E-06 43.5 2.9 23 161-183 15-37 (179)
345 2ew1_A RAS-related protein RAB 92.5 0.075 2.6E-06 44.8 3.3 25 159-183 25-49 (201)
346 3bc1_A RAS-related protein RAB 92.5 0.067 2.3E-06 44.1 2.9 25 159-183 10-34 (195)
347 2afh_E Nitrogenase iron protei 92.5 0.078 2.7E-06 47.5 3.5 24 160-183 2-25 (289)
348 3ld9_A DTMP kinase, thymidylat 92.5 0.18 6E-06 43.4 5.6 26 158-183 19-44 (223)
349 2oil_A CATX-8, RAS-related pro 92.5 0.067 2.3E-06 44.4 2.9 25 159-183 24-48 (193)
350 2orw_A Thymidine kinase; TMTK, 92.5 0.071 2.4E-06 44.4 3.0 22 161-182 4-25 (184)
351 3t5g_A GTP-binding protein RHE 92.4 0.068 2.3E-06 43.7 2.9 25 159-183 5-29 (181)
352 1pui_A ENGB, probable GTP-bind 92.4 0.038 1.3E-06 46.6 1.3 25 159-183 25-49 (210)
353 3kkq_A RAS-related protein M-R 92.4 0.098 3.4E-06 42.8 3.9 25 159-183 17-41 (183)
354 2a9k_A RAS-related protein RAL 92.4 0.069 2.4E-06 43.8 2.9 24 160-183 18-41 (187)
355 3bwd_D RAC-like GTP-binding pr 92.4 0.07 2.4E-06 43.6 2.9 24 160-183 8-31 (182)
356 2ce7_A Cell division protein F 92.4 0.06 2E-06 52.0 2.8 23 161-183 50-72 (476)
357 3llu_A RAS-related GTP-binding 92.4 0.075 2.6E-06 44.4 3.1 25 159-183 19-43 (196)
358 2efe_B Small GTP-binding prote 92.4 0.071 2.4E-06 43.5 2.9 24 160-183 12-35 (181)
359 1upt_A ARL1, ADP-ribosylation 92.4 0.092 3.1E-06 42.3 3.6 24 160-183 7-30 (171)
360 1lw7_A Transcriptional regulat 92.4 0.071 2.4E-06 49.6 3.2 23 160-182 170-192 (365)
361 2atv_A RERG, RAS-like estrogen 92.3 0.071 2.4E-06 44.4 2.9 24 160-183 28-51 (196)
362 2p67_A LAO/AO transport system 92.3 0.17 5.8E-06 46.6 5.7 25 158-182 54-78 (341)
363 2cjw_A GTP-binding protein GEM 92.3 0.075 2.6E-06 44.3 3.0 23 160-182 6-28 (192)
364 1zbd_A Rabphilin-3A; G protein 92.3 0.079 2.7E-06 44.4 3.1 25 160-184 8-32 (203)
365 2dhr_A FTSH; AAA+ protein, hex 92.3 0.064 2.2E-06 52.1 2.8 21 163-183 67-87 (499)
366 2axn_A 6-phosphofructo-2-kinas 92.3 0.08 2.7E-06 51.8 3.5 24 159-182 34-57 (520)
367 2g6b_A RAS-related protein RAB 92.2 0.075 2.6E-06 43.3 2.9 25 159-183 9-33 (180)
368 1vg8_A RAS-related protein RAB 92.2 0.074 2.5E-06 44.6 2.9 25 159-183 7-31 (207)
369 2bov_A RAla, RAS-related prote 92.2 0.1 3.4E-06 43.7 3.7 25 159-183 13-37 (206)
370 1gwn_A RHO-related GTP-binding 92.2 0.074 2.5E-06 44.9 2.9 25 159-183 27-51 (205)
371 1j8m_F SRP54, signal recogniti 92.2 0.066 2.3E-06 48.3 2.7 24 160-183 98-121 (297)
372 3tkl_A RAS-related protein RAB 92.2 0.093 3.2E-06 43.5 3.5 26 159-184 15-40 (196)
373 1ksh_A ARF-like protein 2; sma 92.2 0.079 2.7E-06 43.6 3.0 26 159-184 17-42 (186)
374 2fg5_A RAB-22B, RAS-related pr 92.2 0.076 2.6E-06 44.1 2.9 24 160-183 23-46 (192)
375 2h92_A Cytidylate kinase; ross 92.1 0.068 2.3E-06 45.5 2.6 22 161-182 4-25 (219)
376 3gmt_A Adenylate kinase; ssgci 92.1 0.075 2.6E-06 45.9 2.8 25 159-183 7-31 (230)
377 1ega_A Protein (GTP-binding pr 92.1 0.091 3.1E-06 47.5 3.5 25 159-183 7-31 (301)
378 3cbq_A GTP-binding protein REM 92.1 0.077 2.6E-06 44.4 2.8 24 159-182 22-45 (195)
379 1g8p_A Magnesium-chelatase 38 92.1 0.044 1.5E-06 50.4 1.5 21 163-183 48-68 (350)
380 2fh5_B SR-beta, signal recogni 92.1 0.085 2.9E-06 44.6 3.2 25 159-183 6-30 (214)
381 3oes_A GTPase rhebl1; small GT 92.1 0.079 2.7E-06 44.4 2.9 26 159-184 23-48 (201)
382 3lxx_A GTPase IMAP family memb 92.1 0.1 3.4E-06 45.3 3.6 27 158-184 27-53 (239)
383 2r8r_A Sensor protein; KDPD, P 92.1 0.11 3.7E-06 44.7 3.7 23 161-183 7-29 (228)
384 2yv5_A YJEQ protein; hydrolase 92.1 0.13 4.3E-06 46.6 4.4 21 161-181 166-186 (302)
385 2q3h_A RAS homolog gene family 92.1 0.084 2.9E-06 44.1 3.1 25 159-183 19-43 (201)
386 2qnr_A Septin-2, protein NEDD5 92.1 0.067 2.3E-06 48.4 2.6 20 163-182 21-40 (301)
387 3reg_A RHO-like small GTPase; 92.0 0.082 2.8E-06 43.9 2.9 26 159-184 22-47 (194)
388 1zd9_A ADP-ribosylation factor 92.0 0.083 2.8E-06 43.7 2.9 24 160-183 22-45 (188)
389 2gf9_A RAS-related protein RAB 92.0 0.084 2.9E-06 43.7 2.9 24 160-183 22-45 (189)
390 2o52_A RAS-related protein RAB 92.0 0.086 2.9E-06 44.2 3.0 25 159-183 24-48 (200)
391 2b6h_A ADP-ribosylation factor 92.0 0.08 2.7E-06 44.1 2.8 24 160-183 29-52 (192)
392 3gee_A MNME, tRNA modification 92.0 0.21 7.2E-06 48.2 6.1 54 119-183 203-256 (476)
393 1g8f_A Sulfate adenylyltransfe 91.9 0.072 2.5E-06 51.8 2.7 25 159-183 394-418 (511)
394 2a5j_A RAS-related protein RAB 91.9 0.086 2.9E-06 43.7 2.9 24 160-183 21-44 (191)
395 3dz8_A RAS-related protein RAB 91.9 0.083 2.8E-06 43.8 2.8 24 160-183 23-46 (191)
396 2il1_A RAB12; G-protein, GDP, 91.8 0.082 2.8E-06 44.0 2.7 25 160-184 26-50 (192)
397 2gza_A Type IV secretion syste 91.8 0.08 2.7E-06 49.2 2.8 23 161-183 176-198 (361)
398 1z06_A RAS-related protein RAB 91.8 0.09 3.1E-06 43.5 2.9 25 159-183 19-43 (189)
399 3clv_A RAB5 protein, putative; 91.8 0.13 4.4E-06 42.7 3.9 24 160-183 7-30 (208)
400 1x3s_A RAS-related protein RAB 91.8 0.091 3.1E-06 43.5 2.9 23 161-183 16-38 (195)
401 2j1l_A RHO-related GTP-binding 91.8 0.091 3.1E-06 44.6 3.0 24 160-183 34-57 (214)
402 2gf0_A GTP-binding protein DI- 91.8 0.12 4.1E-06 42.9 3.7 25 159-183 7-31 (199)
403 3hu3_A Transitional endoplasmi 91.8 0.13 4.5E-06 49.8 4.4 153 159-321 237-414 (489)
404 2ewv_A Twitching motility prot 91.7 0.098 3.3E-06 48.9 3.4 23 160-182 136-158 (372)
405 2bcg_Y Protein YP2, GTP-bindin 91.7 0.091 3.1E-06 44.1 2.9 25 159-183 7-31 (206)
406 2h17_A ADP-ribosylation factor 91.7 0.088 3E-06 43.2 2.7 25 159-183 20-44 (181)
407 1u0j_A DNA replication protein 91.7 0.19 6.7E-06 44.3 5.0 37 143-183 91-127 (267)
408 1m8p_A Sulfate adenylyltransfe 91.7 0.18 6.3E-06 49.8 5.4 26 158-183 394-419 (573)
409 2r6a_A DNAB helicase, replicat 91.7 0.21 7.2E-06 47.9 5.7 50 161-213 204-253 (454)
410 4dhe_A Probable GTP-binding pr 91.7 0.081 2.8E-06 45.0 2.6 27 158-184 27-53 (223)
411 3v9p_A DTMP kinase, thymidylat 91.6 0.16 5.6E-06 43.7 4.5 23 161-183 26-48 (227)
412 3k53_A Ferrous iron transport 91.6 0.11 3.9E-06 45.9 3.6 24 160-183 3-26 (271)
413 2pt7_A CAG-ALFA; ATPase, prote 91.6 0.13 4.6E-06 47.1 4.1 23 161-183 172-194 (330)
414 4dkx_A RAS-related protein RAB 91.6 0.096 3.3E-06 44.8 2.9 22 162-183 15-36 (216)
415 1moz_A ARL1, ADP-ribosylation 91.6 0.085 2.9E-06 43.2 2.5 25 159-183 17-41 (183)
416 3ch4_B Pmkase, phosphomevalona 91.6 0.14 4.6E-06 43.3 3.7 24 159-182 10-33 (202)
417 2obl_A ESCN; ATPase, hydrolase 91.5 0.095 3.2E-06 48.4 3.0 23 161-183 72-94 (347)
418 1zj6_A ADP-ribosylation factor 91.5 0.14 4.9E-06 42.1 3.9 24 160-183 16-39 (187)
419 4gzl_A RAS-related C3 botulinu 91.5 0.099 3.4E-06 44.0 2.9 24 160-183 30-53 (204)
420 2ffh_A Protein (FFH); SRP54, s 91.5 0.11 3.9E-06 49.2 3.5 25 159-183 97-121 (425)
421 2p5s_A RAS and EF-hand domain 91.5 0.12 4.1E-06 43.2 3.4 25 159-183 27-51 (199)
422 2fv8_A H6, RHO-related GTP-bin 91.5 0.1 3.4E-06 44.0 2.9 23 161-183 26-48 (207)
423 2j0v_A RAC-like GTP-binding pr 91.5 0.1 3.4E-06 44.1 2.9 25 159-183 8-32 (212)
424 2atx_A Small GTP binding prote 91.5 0.1 3.5E-06 43.3 2.9 24 160-183 18-41 (194)
425 1bif_A 6-phosphofructo-2-kinas 91.4 0.11 3.7E-06 50.2 3.4 25 159-183 38-62 (469)
426 3gd7_A Fusion complex of cysti 91.4 0.11 3.6E-06 48.9 3.2 22 161-182 48-69 (390)
427 2g3y_A GTP-binding protein GEM 91.4 0.14 4.7E-06 43.7 3.7 24 159-182 36-59 (211)
428 2hup_A RAS-related protein RAB 91.4 0.1 3.5E-06 43.8 2.9 25 159-183 28-52 (201)
429 2xtp_A GTPase IMAP family memb 91.4 0.13 4.6E-06 45.0 3.7 25 159-183 21-45 (260)
430 3jvv_A Twitching mobility prot 91.3 0.11 3.7E-06 48.2 3.2 22 161-182 124-145 (356)
431 3cph_A RAS-related protein SEC 91.3 0.11 3.6E-06 43.8 2.9 24 160-183 20-43 (213)
432 1u0l_A Probable GTPase ENGC; p 91.3 0.18 6E-06 45.6 4.5 34 141-183 159-192 (301)
433 1tq4_A IIGP1, interferon-induc 91.3 0.22 7.4E-06 47.1 5.3 24 159-182 68-91 (413)
434 2rcn_A Probable GTPase ENGC; Y 91.3 0.11 3.7E-06 48.1 3.2 23 161-183 216-238 (358)
435 2h57_A ADP-ribosylation factor 91.3 0.084 2.9E-06 43.7 2.2 25 160-184 21-45 (190)
436 2gco_A H9, RHO-related GTP-bin 91.3 0.11 3.7E-06 43.5 2.9 23 161-183 26-48 (201)
437 2f7s_A C25KG, RAS-related prot 91.3 0.12 4E-06 43.8 3.1 24 160-183 25-48 (217)
438 2fu5_C RAS-related protein RAB 91.2 0.066 2.2E-06 43.9 1.5 25 159-183 7-31 (183)
439 3cr8_A Sulfate adenylyltranfer 91.2 0.088 3E-06 51.8 2.6 23 161-183 370-392 (552)
440 3b1v_A Ferrous iron uptake tra 91.1 0.17 5.9E-06 44.9 4.2 24 160-183 3-26 (272)
441 3q3j_B RHO-related GTP-binding 91.1 0.11 3.9E-06 44.0 2.9 23 161-183 28-50 (214)
442 2qag_B Septin-6, protein NEDD5 91.1 0.1 3.6E-06 49.4 2.8 21 163-183 45-65 (427)
443 1jwy_B Dynamin A GTPase domain 91.0 0.27 9.1E-06 44.4 5.5 26 158-183 22-47 (315)
444 3hjn_A DTMP kinase, thymidylat 91.0 0.32 1.1E-05 40.8 5.6 22 162-183 2-23 (197)
445 1c9k_A COBU, adenosylcobinamid 90.9 0.24 8.4E-06 40.9 4.6 35 163-203 2-36 (180)
446 2q6t_A DNAB replication FORK h 90.9 0.32 1.1E-05 46.4 6.2 54 160-216 200-253 (444)
447 1p9r_A General secretion pathw 90.9 0.24 8.4E-06 46.9 5.2 22 161-182 168-189 (418)
448 1wf3_A GTP-binding protein; GT 90.9 0.15 5.2E-06 46.0 3.6 25 159-183 6-30 (301)
449 3iby_A Ferrous iron transport 90.8 0.14 4.9E-06 45.0 3.3 23 161-183 2-24 (256)
450 3ea0_A ATPase, para family; al 90.8 0.16 5.3E-06 44.0 3.6 25 159-183 3-28 (245)
451 3cf2_A TER ATPase, transitiona 90.8 0.14 4.9E-06 52.5 3.7 148 158-315 236-407 (806)
452 1g41_A Heat shock protein HSLU 90.8 0.11 3.9E-06 49.4 2.8 24 160-183 50-73 (444)
453 3k9g_A PF-32 protein; ssgcid, 90.8 0.14 4.6E-06 45.2 3.2 42 158-202 25-67 (267)
454 2npi_A Protein CLP1; CLP1-PCF1 90.7 0.11 3.7E-06 50.0 2.6 23 161-183 139-161 (460)
455 4dzz_A Plasmid partitioning pr 90.7 0.13 4.6E-06 43.0 2.9 39 161-201 2-41 (206)
456 3fdi_A Uncharacterized protein 90.6 0.14 4.9E-06 43.2 3.0 23 161-183 7-29 (201)
457 1h65_A Chloroplast outer envel 90.6 0.34 1.2E-05 42.8 5.6 26 159-184 38-63 (270)
458 1x6v_B Bifunctional 3'-phospho 90.5 0.16 5.6E-06 50.5 3.8 25 159-183 51-75 (630)
459 3def_A T7I23.11 protein; chlor 90.5 0.35 1.2E-05 42.5 5.6 26 159-184 35-60 (262)
460 3bgw_A DNAB-like replicative h 90.5 0.23 7.7E-06 47.6 4.6 51 161-215 198-248 (444)
461 2qag_C Septin-7; cell cycle, c 90.5 0.13 4.4E-06 48.8 2.9 21 163-183 34-54 (418)
462 2x77_A ADP-ribosylation factor 90.5 0.1 3.4E-06 43.1 1.9 24 160-183 22-45 (189)
463 3euj_A Chromosome partition pr 90.3 0.16 5.5E-06 49.0 3.4 22 161-182 30-51 (483)
464 3lxw_A GTPase IMAP family memb 90.3 0.16 5.5E-06 44.4 3.1 26 159-184 20-45 (247)
465 3fkq_A NTRC-like two-domain pr 90.3 0.2 6.7E-06 46.8 3.9 42 156-199 139-181 (373)
466 1f2t_A RAD50 ABC-ATPase; DNA d 90.3 0.21 7.1E-06 39.9 3.6 23 160-182 23-45 (149)
467 1q57_A DNA primase/helicase; d 90.3 0.34 1.2E-05 47.1 5.8 54 160-216 242-295 (503)
468 3cpj_B GTP-binding protein YPT 90.2 0.15 5.1E-06 43.5 2.9 25 159-183 12-36 (223)
469 3ozx_A RNAse L inhibitor; ATP 90.2 0.15 5E-06 50.2 3.0 23 161-183 295-317 (538)
470 2dpy_A FLII, flagellum-specifi 90.1 0.15 5.1E-06 48.7 3.0 23 161-183 158-180 (438)
471 3b60_A Lipid A export ATP-bind 90.1 0.22 7.4E-06 49.5 4.2 22 161-182 370-391 (582)
472 3tqf_A HPR(Ser) kinase; transf 90.1 0.17 5.7E-06 41.6 2.8 22 161-182 17-38 (181)
473 1t9h_A YLOQ, probable GTPase E 90.0 0.08 2.7E-06 48.0 1.0 23 161-183 174-196 (307)
474 3b5x_A Lipid A export ATP-bind 90.0 0.23 7.9E-06 49.3 4.4 22 161-182 370-391 (582)
475 3io3_A DEHA2D07832P; chaperone 90.0 0.2 7E-06 46.2 3.8 25 158-182 16-40 (348)
476 1yqt_A RNAse L inhibitor; ATP- 90.0 0.16 5.5E-06 49.9 3.2 23 161-183 313-335 (538)
477 3t5d_A Septin-7; GTP-binding p 89.9 0.16 5.4E-06 45.1 2.8 23 161-183 9-31 (274)
478 3a1s_A Iron(II) transport prot 89.9 0.19 6.4E-06 44.3 3.2 24 160-183 5-28 (258)
479 3ozx_A RNAse L inhibitor; ATP 89.8 0.17 5.8E-06 49.7 3.2 23 161-183 26-48 (538)
480 1yqt_A RNAse L inhibitor; ATP- 89.7 0.17 6E-06 49.6 3.2 22 161-182 48-69 (538)
481 3k1j_A LON protease, ATP-depen 89.7 0.15 5.2E-06 50.9 2.8 23 161-183 61-83 (604)
482 3tmk_A Thymidylate kinase; pho 89.7 0.19 6.5E-06 43.0 3.0 23 161-183 6-28 (216)
483 3iqw_A Tail-anchored protein t 89.7 0.42 1.4E-05 43.8 5.6 24 159-182 15-38 (334)
484 1jr3_D DNA polymerase III, del 89.7 1.3 4.6E-05 40.3 9.1 156 160-321 18-184 (343)
485 3cf2_A TER ATPase, transitiona 89.6 0.54 1.9E-05 48.2 6.7 24 160-183 511-534 (806)
486 1zcb_A G alpha I/13; GTP-bindi 89.5 0.22 7.6E-06 46.2 3.6 22 159-180 32-53 (362)
487 1dek_A Deoxynucleoside monopho 89.5 0.21 7.2E-06 43.5 3.2 22 161-182 2-23 (241)
488 3kjh_A CO dehydrogenase/acetyl 89.5 0.16 5.4E-06 44.0 2.5 40 163-204 3-42 (254)
489 3q9l_A Septum site-determining 89.5 0.22 7.4E-06 43.5 3.4 23 161-183 3-26 (260)
490 3bk7_A ABC transporter ATP-bin 89.4 0.19 6.5E-06 50.1 3.2 23 161-183 383-405 (607)
491 2b8t_A Thymidine kinase; deoxy 89.4 0.22 7.5E-06 42.8 3.2 23 161-183 13-35 (223)
492 3j16_B RLI1P; ribosome recycli 89.3 0.19 6.6E-06 50.0 3.2 23 161-183 379-401 (608)
493 3cwq_A Para family chromosome 89.2 0.23 7.8E-06 42.1 3.2 41 162-205 2-43 (209)
494 2yc2_C IFT27, small RAB-relate 89.2 0.085 2.9E-06 44.1 0.5 23 161-183 21-43 (208)
495 2gks_A Bifunctional SAT/APS ki 89.2 0.21 7E-06 49.2 3.2 25 159-183 371-395 (546)
496 3j16_B RLI1P; ribosome recycli 89.1 0.2 7E-06 49.8 3.2 22 161-182 104-125 (608)
497 2qag_A Septin-2, protein NEDD5 89.0 0.17 5.9E-06 46.9 2.4 22 162-183 39-60 (361)
498 4i1u_A Dephospho-COA kinase; s 89.0 0.22 7.4E-06 42.4 2.8 25 158-182 7-31 (210)
499 1ypw_A Transitional endoplasmi 88.9 0.19 6.6E-06 51.9 3.0 25 159-183 237-261 (806)
500 3r7w_A Gtpase1, GTP-binding pr 88.9 0.23 7.8E-06 44.9 3.1 23 161-183 4-26 (307)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=4.8e-36 Score=300.02 Aligned_cols=239 Identities=13% Similarity=0.112 Sum_probs=181.9
Q ss_pred hhhhhHHHHHHHHhcCCCCCCCCceEEEEEcCCCCcHHHHHHHHhc--cccccccccceEEEEecCCC--CHHHHHHHHH
Q 038448 137 EKDKEKEETVKLLLRDDLRTDDGLSVIPIIGTGRIGKTTLAQLAYS--DVRVHNHFDLKAWTCVSEDF--DIIRVTKSIL 212 (385)
Q Consensus 137 ~~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~--~~~~~~~F~~~~wv~vs~~~--~~~~~~~~il 212 (385)
+.+.++++|.++|.... +++.++|+|+||||+||||||+++|+ +.+++.+|++++||++++.+ +...++..|+
T Consensus 132 GR~~~~~~l~~~L~~~~---~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il 208 (549)
T 2a5y_B 132 IREYHVDRVIKKLDEMC---DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDIL 208 (549)
T ss_dssp CCHHHHHHHHHHHHHHT---TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHH
T ss_pred CchHHHHHHHHHHhccc---CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHH
Confidence 44778888999986542 34679999999999999999999998 66899999999999999985 8999999999
Q ss_pred HHhhcCCC----CCcc--ch----HHhh------------chhhHhhHhhhccCCCCCcEEEEEcCChhHHhhcCCC-Cc
Q 038448 213 KSIASDQL----VDDH--DL----NLLQ------------KYNDWTNRSRLFEAGAPGSKIVFTTRNLGVAEKMGPL-PA 269 (385)
Q Consensus 213 ~~l~~~~~----~~~~--~~----~~l~------------~~~~w~~l~~~l~~~~~gs~IivTTR~~~va~~~~~~-~~ 269 (385)
.+++.... .... +. ..+. -++.|+.-...++. .+||+||||||+..++..++.. .+
T Consensus 209 ~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~-~~gs~ilvTTR~~~v~~~~~~~~~~ 287 (549)
T 2a5y_B 209 LMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQ-ELRLRCLVTTRDVEISNAASQTCEF 287 (549)
T ss_dssp HHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHH-HTTCEEEEEESBGGGGGGCCSCEEE
T ss_pred HHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhcccc-cCCCEEEEEcCCHHHHHHcCCCCeE
Confidence 99986531 0111 11 1111 12233321113332 3799999999999999887633 67
Q ss_pred ccCCCCChhhHHhhhhccccCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHHHHhh-----------------------
Q 038448 270 YPLKELSNDDCLSVFSPHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVAKSLGGLLR----------------------- 326 (385)
Q Consensus 270 ~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~c~glPLAi~~~~~~L~----------------------- 326 (385)
|+|++|+.++||+||.+.+|+.. .++.+.+++.+|+++|+|+||||+++|++|+
T Consensus 288 ~~l~~L~~~ea~~Lf~~~a~~~~---~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w~~~~~l~~~l~~~~~~~i~ 364 (549)
T 2a5y_B 288 IEVTSLEIDECYDFLEAYGMPMP---VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTFEKMAQLNNKLESRGLVGVE 364 (549)
T ss_dssp EECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSHHHHHHHHHHHHHHCSSTTC
T ss_pred EECCCCCHHHHHHHHHHHhcCCC---CchhHHHHHHHHHHHhCCChHHHHHHHHHhccchHHHHHHhHHHhhcccHHHHH
Confidence 99999999999999999988653 2467889999999999999999999998754
Q ss_pred --------------------------------cccC-------------------CCCccCcHHHHHHHHHHHHHhcccc
Q 038448 327 --------------------------------GFLN-------------------HESDKKQMENLGRKYFQELYSRLFF 355 (385)
Q Consensus 327 --------------------------------g~~~-------------------~~~~~~~~e~~~~~~~~~Lv~rsll 355 (385)
++++ ....+.+++++++ ||++|+++|||
T Consensus 365 ~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~~L~~rsLl 443 (549)
T 2a5y_B 365 CITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIPVKLWSCVIPVDICSNEEEQLDDEVAD-RLKRLSKRGAL 443 (549)
T ss_dssp CCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEEHHHHHHHSCC-------CCCTHHHHH-HHHHTTTBSSC
T ss_pred HHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeeeeeeeeeeccceeccCCCCCCHHHHHH-HHHHHHHcCCe
Confidence 1111 1001344677777 99999999999
Q ss_pred ceecCC-CCceeEchhHHHHHHHhhcccc
Q 038448 356 QLSSSN-KSLFVMHDLNNDLLNGLHGRFT 383 (385)
Q Consensus 356 ~~~~~~-~~~~~mHdlv~d~a~~~s~~e~ 383 (385)
++...+ ..+|+|||+||++|++++++++
T Consensus 444 ~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 444 LSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp SEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred eEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 987643 3469999999999999998765
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.94 E-value=3.2e-26 Score=249.47 Aligned_cols=234 Identities=21% Similarity=0.316 Sum_probs=166.3
Q ss_pred hhhHHHHHHHHhcCCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccc-cccc-cceEEEEecCCCC--HHHHHHHHHHH
Q 038448 139 DKEKEETVKLLLRDDLRTDDGLSVIPIIGTGRIGKTTLAQLAYSDVRV-HNHF-DLKAWTCVSEDFD--IIRVTKSILKS 214 (385)
Q Consensus 139 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-~~~F-~~~~wv~vs~~~~--~~~~~~~il~~ 214 (385)
+.+.++|.++|.... ++.++|+|+||||+||||||+++|++.+. ..+| +.++||++++..+ ....+..++..
T Consensus 130 ~~~~~~l~~~l~~~~----~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 205 (1249)
T 3sfz_A 130 KKLVHAIQQKLWKLN----GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMR 205 (1249)
T ss_dssp HHHHHHHHHHHHTTT----TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcc----CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHHHHH
Confidence 777888888886532 46799999999999999999999998543 4445 5677999998543 34456777777
Q ss_pred hhcCCCC---CccchHHhh-----------------chhhHhhHhhhccCCCCCcEEEEEcCChhHHhh-cCCCCcccCC
Q 038448 215 IASDQLV---DDHDLNLLQ-----------------KYNDWTNRSRLFEAGAPGSKIVFTTRNLGVAEK-MGPLPAYPLK 273 (385)
Q Consensus 215 l~~~~~~---~~~~~~~l~-----------------~~~~w~~l~~~l~~~~~gs~IivTTR~~~va~~-~~~~~~~~l~ 273 (385)
+...... .....+.+. -++.|+.- .+....+||+||||||++.++.. ++....+.+.
T Consensus 206 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~--~~~~~~~~~~ilvTtR~~~~~~~~~~~~~~~~~~ 283 (1249)
T 3sfz_A 206 LDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW--VLKAFDNQCQILLTTRDKSVTDSVMGPKHVVPVE 283 (1249)
T ss_dssp HTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH--HHTTTCSSCEEEEEESSTTTTTTCCSCBCCEECC
T ss_pred hhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH--HHHhhcCCCEEEEEcCCHHHHHhhcCCceEEEec
Confidence 7654321 111222211 12223221 12223679999999999999854 3455788999
Q ss_pred C-CChhhHHhhhhccccCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHHHHhh--------------------------
Q 038448 274 E-LSNDDCLSVFSPHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVAKSLGGLLR-------------------------- 326 (385)
Q Consensus 274 ~-L~~~~a~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~c~glPLAi~~~~~~L~-------------------------- 326 (385)
+ |+.++|++||...++... +.+.+++.+|+++|+|+||||+++|++|+
T Consensus 284 ~~l~~~~a~~l~~~~~~~~~-----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~ 358 (1249)
T 3sfz_A 284 SGLGREKGLEILSLFVNMKK-----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFPNRWAYYLRQLQNKQFKRIRKSSS 358 (1249)
T ss_dssp SSCCHHHHHHHHHHHHTSCS-----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSSSCHHHHHHHHHSCCCCCSSCTTC
T ss_pred CCCCHHHHHHHHHHhhCCCh-----hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcChhHHHHHHHHHhhhhhhhcccccc
Confidence 6 999999999998874322 33456789999999999999999999997
Q ss_pred ----------------------------cccCCCCc---------cCcHHHHHHHHHHHHHhccccceecCCCC-ceeEc
Q 038448 327 ----------------------------GFLNHESD---------KKQMENLGRKYFQELYSRLFFQLSSSNKS-LFVMH 368 (385)
Q Consensus 327 ----------------------------g~~~~~~~---------~~~~e~~~~~~~~~Lv~rsll~~~~~~~~-~~~mH 368 (385)
++++.... ....++.++.+|++|+++||++....+.. +|+||
T Consensus 359 ~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h 438 (1249)
T 3sfz_A 359 YDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLLFCNRNGKSFCYYLH 438 (1249)
T ss_dssp TTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEEESSSSEEEECC
T ss_pred cchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccceEEecCCCceEEEec
Confidence 11111000 01114557899999999999998754332 49999
Q ss_pred hhHHHHHHHhhcccc
Q 038448 369 DLNNDLLNGLHGRFT 383 (385)
Q Consensus 369 dlv~d~a~~~s~~e~ 383 (385)
|+||++|+..+.+|.
T Consensus 439 ~l~~~~~~~~~~~~~ 453 (1249)
T 3sfz_A 439 DLQVDFLTEKNRSQL 453 (1249)
T ss_dssp HHHHHHHHHHTGGGH
T ss_pred HHHHHHHHhhhhHHH
Confidence 999999999988764
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.93 E-value=1.1e-25 Score=231.04 Aligned_cols=220 Identities=14% Similarity=0.090 Sum_probs=152.1
Q ss_pred hhhhhhHHHHHHHHhcCCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccccccc-eEEEEecCCCCHHHHHHHHHHH
Q 038448 136 IEKDKEKEETVKLLLRDDLRTDDGLSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDL-KAWTCVSEDFDIIRVTKSILKS 214 (385)
Q Consensus 136 i~~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~~~~~il~~ 214 (385)
++++.+.++|.++|... ++.++|+|+||||+||||||+.+|++.+++.+|+. ++|+++++.++...++..|+..
T Consensus 131 VGRe~eLeeL~elL~~~-----d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~l 205 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLEL-----RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL 205 (1221)
T ss_dssp CCCHHHHHHHHHHHHHC-----CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhcc-----CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 44577788888888752 23689999999999999999999998778899986 8999999999988888888775
Q ss_pred hhcCC---CCCc-------cchH----Hhh--------------chhhHhh-HhhhccCCCCCcEEEEEcCChhHHhhcC
Q 038448 215 IASDQ---LVDD-------HDLN----LLQ--------------KYNDWTN-RSRLFEAGAPGSKIVFTTRNLGVAEKMG 265 (385)
Q Consensus 215 l~~~~---~~~~-------~~~~----~l~--------------~~~~w~~-l~~~l~~~~~gs~IivTTR~~~va~~~~ 265 (385)
+.... .... ...+ .+. -++.|.. ....++ +||+||||||+..++..+.
T Consensus 206 L~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~---pGSRILVTTRd~~Va~~l~ 282 (1221)
T 1vt4_I 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN---LSCKILLTTRFKQVTDFLS 282 (1221)
T ss_dssp HHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH---SSCCEEEECSCSHHHHHHH
T ss_pred HhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC---CCeEEEEeccChHHHHhcC
Confidence 43321 0000 0111 111 1122221 112233 7999999999999986544
Q ss_pred CCCcccCC------CCChhhHHhhhhccccCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHHHHhhcc-----------
Q 038448 266 PLPAYPLK------ELSNDDCLSVFSPHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVAKSLGGLLRGF----------- 328 (385)
Q Consensus 266 ~~~~~~l~------~L~~~~a~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~c~glPLAi~~~~~~L~g~----------- 328 (385)
....|.++ +|+.++||+||.+. ++.. . .++..+| |+|+||||+++|+.|++.
T Consensus 283 g~~vy~LeL~d~dL~LS~eEA~eLF~~~-~g~~----~---eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~~ 351 (1221)
T 1vt4_I 283 AATTTHISLDHHSMTLTPDEVKSLLLKY-LDCR----P---QDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHVN 351 (1221)
T ss_dssp HHSSCEEEECSSSSCCCHHHHHHHHHHH-HCCC----T---TTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHCS
T ss_pred CCeEEEecCccccCCcCHHHHHHHHHHH-cCCC----H---HHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcCC
Confidence 33457777 99999999999987 3322 1 1233333 999999999999998611
Q ss_pred -----------------------------cCCCCc----------cCcHHHHHHHHHHHHHhccccceecCCCCceeEch
Q 038448 329 -----------------------------LNHESD----------KKQMENLGRKYFQELYSRLFFQLSSSNKSLFVMHD 369 (385)
Q Consensus 329 -----------------------------~~~~~~----------~~~~e~~~~~~~~~Lv~rsll~~~~~~~~~~~mHd 369 (385)
+..... ....++.++.+|++|+++|||+.. ....+|+|||
T Consensus 352 ~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSLLq~d-~~~~rYrMHD 430 (1221)
T 1vt4_I 352 CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ-PKESTISIPS 430 (1221)
T ss_dssp CHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSSSSBC-SSSSEEBCCC
T ss_pred hhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhCCEEEe-CCCCEEEehH
Confidence 110000 000023478999999999999985 2345699999
Q ss_pred hHHHHH
Q 038448 370 LNNDLL 375 (385)
Q Consensus 370 lv~d~a 375 (385)
|+++++
T Consensus 431 LllELr 436 (1221)
T 1vt4_I 431 IYLELK 436 (1221)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999966
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.90 E-value=6e-23 Score=207.32 Aligned_cols=228 Identities=22% Similarity=0.314 Sum_probs=152.4
Q ss_pred hhhHHHHHHHHhcCCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccc-cccc-cceEEEEecCCCCHHHHHHHH---HH
Q 038448 139 DKEKEETVKLLLRDDLRTDDGLSVIPIIGTGRIGKTTLAQLAYSDVRV-HNHF-DLKAWTCVSEDFDIIRVTKSI---LK 213 (385)
Q Consensus 139 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-~~~F-~~~~wv~vs~~~~~~~~~~~i---l~ 213 (385)
+.+.+.|.++|... .++.++|+|+||||+||||||..+|++.++ ..+| +.++|++++.. +...++..+ +.
T Consensus 130 ~~~l~~L~~~L~~~----~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~~l~~ 204 (591)
T 1z6t_A 130 KKLVNAIQQKLSKL----KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQNLCT 204 (591)
T ss_dssp HHHHHHHHHHHTTS----TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc----cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHHHHHHH
Confidence 77778888888643 235789999999999999999999998655 7889 48999999875 333444433 33
Q ss_pred HhhcCCC---CCccchHH----hh-------------chhhHhhHhhhccCCCCCcEEEEEcCChhHHhhcCCCCcccC-
Q 038448 214 SIASDQL---VDDHDLNL----LQ-------------KYNDWTNRSRLFEAGAPGSKIVFTTRNLGVAEKMGPLPAYPL- 272 (385)
Q Consensus 214 ~l~~~~~---~~~~~~~~----l~-------------~~~~w~~l~~~l~~~~~gs~IivTTR~~~va~~~~~~~~~~l- 272 (385)
.+..... ......+. +. -++.|..- .+....+|++||||||+..++..+.. ..+.+
T Consensus 205 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~--~l~~l~~~~~ilvTsR~~~~~~~~~~-~~~~v~ 281 (591)
T 1z6t_A 205 RLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSW--VLKAFDSQCQILLTTRDKSVTDSVMG-PKYVVP 281 (591)
T ss_dssp HHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHH--HHHTTCSSCEEEEEESCGGGGTTCCS-CEEEEE
T ss_pred HhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHH--HHHHhcCCCeEEEECCCcHHHHhcCC-CceEee
Confidence 4432111 01112111 11 11122210 11123578999999999998876542 33443
Q ss_pred --CCCChhhHHhhhhccccCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHHHHhhc-----------------------
Q 038448 273 --KELSNDDCLSVFSPHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVAKSLGGLLRG----------------------- 327 (385)
Q Consensus 273 --~~L~~~~a~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~c~glPLAi~~~~~~L~g----------------------- 327 (385)
.+|+.+++++||...++... ....+.+.+|+++|+|+||||..+|+.|++
T Consensus 282 ~l~~L~~~ea~~L~~~~~~~~~-----~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~~~w~~~l~~l~~~~~~~~~~~ 356 (591)
T 1z6t_A 282 VESSLGKEKGLEILSLFVNMKK-----ADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNRWEYYLKQLQNKQFKRIRKS 356 (591)
T ss_dssp CCSSCCHHHHHHHHHHHHTSCG-----GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHSTTCHHHHHHHHHSCCCCCSSCC
T ss_pred cCCCCCHHHHHHHHHHHhCCCc-----ccccHHHHHHHHHhCCCcHHHHHHHHHHhcCchhHHHHHHHHHHhHHHHhhhc
Confidence 68999999999998875421 222457889999999999999999998851
Q ss_pred -------------------------------ccCCCC----------ccCcHHHHHHHHHHHHHhccccceecCC-CCce
Q 038448 328 -------------------------------FLNHES----------DKKQMENLGRKYFQELYSRLFFQLSSSN-KSLF 365 (385)
Q Consensus 328 -------------------------------~~~~~~----------~~~~~e~~~~~~~~~Lv~rsll~~~~~~-~~~~ 365 (385)
++.... +... .+.+..++++|+++|||+....+ ...|
T Consensus 357 ~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-~~~~~~~l~~L~~~~Ll~~~~~~~~~~~ 435 (591)
T 1z6t_A 357 SSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME-TEEVEDILQEFVNKSLLFCDRNGKSFRY 435 (591)
T ss_dssp CSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-HHHHHHHHHHHHHTTSSEEEEETTEEEE
T ss_pred cccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC-HHHHHHHHHHHHhCcCeEEecCCCccEE
Confidence 111000 0011 12467899999999999976433 2369
Q ss_pred eEchhHHHHHHHhhc
Q 038448 366 VMHDLNNDLLNGLHG 380 (385)
Q Consensus 366 ~mHdlv~d~a~~~s~ 380 (385)
+||++||++++....
T Consensus 436 ~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 436 YLHDLQVDFLTEKNC 450 (591)
T ss_dssp ECCHHHHHHHHHHTG
T ss_pred EEcHHHHHHHHhhhh
Confidence 999999999998743
No 5
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.58 E-value=3e-16 Score=122.56 Aligned_cols=63 Identities=19% Similarity=0.324 Sum_probs=58.6
Q ss_pred cCCCCChhhHHHHHHHHHHHHHHHHHHHhc--ccCchHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 038448 19 CTPKAEPGRSDEWKKILVKINEVLDDAEEK--QNTEQSVKMWLGDLQNLAYDVDDLLDELETEAF 81 (385)
Q Consensus 19 ~~~~~v~~~l~~l~~~L~~i~~~l~~ae~~--~~~~~~~~~Wl~~lr~~ayd~eD~lD~~~~~~~ 81 (385)
.++.||++++++|+++|++|++||.+|+.+ +.+++.++.|+++||++|||+|||||+|.++..
T Consensus 19 ~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~~~~ 83 (115)
T 3qfl_A 19 KLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLVQVD 83 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456799999999999999999999999987 567899999999999999999999999999875
No 6
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.81 E-value=1.5e-08 Score=94.64 Aligned_cols=152 Identities=16% Similarity=0.212 Sum_probs=88.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCCC------CHHHHHHHHHHHhhc----------------C
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSEDF------DIIRVTKSILKSIAS----------------D 218 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~------~~~~~~~~il~~l~~----------------~ 218 (385)
+++.|+|++|+|||||++.+++.. + .+|++..... +...++..+...+.. .
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 104 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFL 104 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGG
T ss_pred CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecce
Confidence 689999999999999999998752 1 6677754332 444555555544321 0
Q ss_pred CCC-Cccc---------------------hHHhhchh--------h-HhhHhhhccCCCCCcEEEEEcCChhHHhhc---
Q 038448 219 QLV-DDHD---------------------LNLLQKYN--------D-WTNRSRLFEAGAPGSKIVFTTRNLGVAEKM--- 264 (385)
Q Consensus 219 ~~~-~~~~---------------------~~~l~~~~--------~-w~~l~~~l~~~~~gs~IivTTR~~~va~~~--- 264 (385)
... .... +|+++... . +..+...+.. .++.++|+|++.......+
T Consensus 105 ~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~-~~~~~~il~g~~~~~l~~~l~~ 183 (350)
T 2qen_A 105 TLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDS-LPNLKIILTGSEVGLLHDFLKI 183 (350)
T ss_dssp TSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHH-CTTEEEEEEESSHHHHHHHHCT
T ss_pred eeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHHh-cCCeEEEEECCcHHHHHHHHhh
Confidence 000 0011 11111111 1 1222222221 2477899999876542211
Q ss_pred --------CC-CCcccCCCCChhhHHhhhhccccCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHHHH
Q 038448 265 --------GP-LPAYPLKELSNDDCLSVFSPHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVAKSLGGL 324 (385)
Q Consensus 265 --------~~-~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~c~glPLAi~~~~~~ 324 (385)
+. ...+.+.+|+.+++.+++.... ....... -.+.+..|+..|+|.|+++..++..
T Consensus 184 ~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~-~~~~~~~---~~~~~~~i~~~tgG~P~~l~~~~~~ 248 (350)
T 2qen_A 184 TDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGF-REVNLDV---PENEIEEAVELLDGIPGWLVVFGVE 248 (350)
T ss_dssp TCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHH-HTTTCCC---CHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCCCCccccCccceeeCCCCCHHHHHHHHHHHH-HHcCCCC---CHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 11 1368899999999999987642 1111111 1356788999999999999887753
No 7
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.75 E-value=2.9e-08 Score=92.76 Aligned_cols=72 Identities=17% Similarity=0.258 Sum_probs=48.4
Q ss_pred CCcEEEEEcCChhHHhhc----------C-C-CCcccCCCCChhhHHhhhhccccCCCCCCCCccHHHHHHHHHHHcCCC
Q 038448 247 PGSKIVFTTRNLGVAEKM----------G-P-LPAYPLKELSNDDCLSVFSPHSLGEKDFSTHPSLKEIGEKIVKKCNGL 314 (385)
Q Consensus 247 ~gs~IivTTR~~~va~~~----------~-~-~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~c~gl 314 (385)
.+.++|+|++.......+ . . ...+.+.+|+.+++.+++.... ...... .... ..|+..|+|.
T Consensus 169 ~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~-~~~~~~-~~~~----~~i~~~t~G~ 242 (357)
T 2fna_A 169 KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGF-QEADID-FKDY----EVVYEKIGGI 242 (357)
T ss_dssp TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHH-HHHTCC-CCCH----HHHHHHHCSC
T ss_pred CCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHH-HHcCCC-CCcH----HHHHHHhCCC
Confidence 467899999986542211 1 1 1368899999999999997642 110111 1121 7899999999
Q ss_pred hHHHHHHHHH
Q 038448 315 PLVAKSLGGL 324 (385)
Q Consensus 315 PLAi~~~~~~ 324 (385)
|+++..++..
T Consensus 243 P~~l~~~~~~ 252 (357)
T 2fna_A 243 PGWLTYFGFI 252 (357)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999887654
No 8
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.73 E-value=7.6e-08 Score=92.01 Aligned_cols=156 Identities=16% Similarity=0.108 Sum_probs=90.3
Q ss_pred eEEEE--EcCCCCcHHHHHHHHhcccccc---cccc-ceEEEEecCCCCHHHHHHHHHHHhhcCCCCCccc----hHHhh
Q 038448 161 SVIPI--IGTGRIGKTTLAQLAYSDVRVH---NHFD-LKAWTCVSEDFDIIRVTKSILKSIASDQLVDDHD----LNLLQ 230 (385)
Q Consensus 161 ~vi~I--~G~gGiGKTtLA~~v~~~~~~~---~~F~-~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~----~~~l~ 230 (385)
..+.| +|++|+||||||+.+++..... ..|+ ..+|++.....+...++..++.+++......... ...+.
T Consensus 51 ~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~ 130 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALV 130 (412)
T ss_dssp EEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH
Confidence 45556 9999999999999999853211 0122 3567777666788888888888876532211111 11110
Q ss_pred --------------ch------------hhHhhHhhhccCC---C--CCcEEEEEcCChhHHhhc--------CC-CCcc
Q 038448 231 --------------KY------------NDWTNRSRLFEAG---A--PGSKIVFTTRNLGVAEKM--------GP-LPAY 270 (385)
Q Consensus 231 --------------~~------------~~w~~l~~~l~~~---~--~gs~IivTTR~~~va~~~--------~~-~~~~ 270 (385)
++ +.+..+...+... . ....||+||+...+...+ .. ...+
T Consensus 131 ~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i 210 (412)
T 1w5s_A 131 DNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKL 210 (412)
T ss_dssp HHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEE
T ss_pred HHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCee
Confidence 11 2222222222211 1 233478788765533211 11 1228
Q ss_pred cCCCCChhhHHhhhhccc---cCCCCCCCCccHHHHHHHHHHHcC------CChHHHHHH
Q 038448 271 PLKELSNDDCLSVFSPHS---LGEKDFSTHPSLKEIGEKIVKKCN------GLPLVAKSL 321 (385)
Q Consensus 271 ~l~~L~~~~a~~Lf~~~a---~~~~~~~~~~~l~~~~~~i~~~c~------glPLAi~~~ 321 (385)
.+.+|+.++.+++|...+ +... . --.+....|++.|+ |.|..+..+
T Consensus 211 ~l~~l~~~e~~~ll~~~~~~~~~~~--~---~~~~~~~~i~~~~~~~~~~~G~p~~~~~l 265 (412)
T 1w5s_A 211 HLPAYKSRELYTILEQRAELGLRDT--V---WEPRHLELISDVYGEDKGGDGSARRAIVA 265 (412)
T ss_dssp ECCCCCHHHHHHHHHHHHHHHBCTT--S---CCHHHHHHHHHHHCGGGTSCCCHHHHHHH
T ss_pred eeCCCCHHHHHHHHHHHHHhcCCCC--C---CChHHHHHHHHHHHHhccCCCcHHHHHHH
Confidence 999999999999997543 2211 1 11456778999999 999654433
No 9
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.73 E-value=1e-07 Score=83.61 Aligned_cols=160 Identities=13% Similarity=0.070 Sum_probs=94.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcccccccc-------------------ccceEEEEecCCCCHHHHHHHHHHHhhcCCCC
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHNH-------------------FDLKAWTCVSEDFDIIRVTKSILKSIASDQLV 221 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-------------------F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~ 221 (385)
..+.|+|++|+||||||+.+++....... +.....+.... ......+..++..+......
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 124 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPAR 124 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEEEETTC-GGGHHHHHHHHHSCCCSCSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEEecCcc-cccHHHHHHHHHHhhhchhc
Confidence 58899999999999999999865321111 11112222221 12334455566555322110
Q ss_pred ---CccchHHhh--chhhHhhHhhhccCCCCCcEEEEEcCChhHH-hh-cCCCCcccCCCCChhhHHhhhhccccCCCCC
Q 038448 222 ---DDHDLNLLQ--KYNDWTNRSRLFEAGAPGSKIVFTTRNLGVA-EK-MGPLPAYPLKELSNDDCLSVFSPHSLGEKDF 294 (385)
Q Consensus 222 ---~~~~~~~l~--~~~~w~~l~~~l~~~~~gs~IivTTR~~~va-~~-~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~ 294 (385)
..--+++++ ....++.+...+.....+..+|+||+..... .. ......+.+.+++.++..+++...+.....
T Consensus 125 ~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~- 203 (250)
T 1njg_A 125 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI- 203 (250)
T ss_dssp SSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTC-
T ss_pred CCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCC-
Confidence 111123333 3445666666665555678888888764321 11 122356899999999999999876532211
Q ss_pred CCCccHHHHHHHHHHHcCCChHHHHHHHHHh
Q 038448 295 STHPSLKEIGEKIVKKCNGLPLVAKSLGGLL 325 (385)
Q Consensus 295 ~~~~~l~~~~~~i~~~c~glPLAi~~~~~~L 325 (385)
. --.+....|++.|+|.|..+..+...+
T Consensus 204 ~---~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 204 A---HEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp C---BCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred C---CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 1 113567789999999999988876554
No 10
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.64 E-value=2.8e-07 Score=79.76 Aligned_cols=158 Identities=13% Similarity=0.001 Sum_probs=88.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcccccccccc-ceEEEEecCCCCHHHHHHHHHHHhhcCC-----CCCccchHHhh--chh
Q 038448 162 VIPIIGTGRIGKTTLAQLAYSDVRVHNHFD-LKAWTCVSEDFDIIRVTKSILKSIASDQ-----LVDDHDLNLLQ--KYN 233 (385)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~il~~l~~~~-----~~~~~~~~~l~--~~~ 233 (385)
.+.|+|++|+|||+||+.+++... ...+. ..+.++.+...+...+... +..+.... ....--+++++ ...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~vliiDe~~~l~~~ 117 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGIDVVRHK-IKEFARTAPIGGAPFKIIFLDEADALTAD 117 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHH-GGGGGGGEEEEETTCTTCHHHHHHH-HHHHHTSCCSTTCSCEEEEEETGGGSCHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHh-ccccccceEEeccccccChHHHHHH-HHHHhcccCCCccCceEEEEeChhhcCHH
Confidence 489999999999999999987421 11222 2333444444444333333 33322211 00111123322 223
Q ss_pred hHhhHhhhccCCCCCcEEEEEcCChhHH-h-hcCCCCcccCCCCChhhHHhhhhccccCCCCCCCCccHHHHHHHHHHHc
Q 038448 234 DWTNRSRLFEAGAPGSKIVFTTRNLGVA-E-KMGPLPAYPLKELSNDDCLSVFSPHSLGEKDFSTHPSLKEIGEKIVKKC 311 (385)
Q Consensus 234 ~w~~l~~~l~~~~~gs~IivTTR~~~va-~-~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~c 311 (385)
.++.+...+.....+..+|+||+..... . .......+.+.+++.++...++...+..... . --.+....|++.+
T Consensus 118 ~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~-~---~~~~~~~~l~~~~ 193 (226)
T 2chg_A 118 AQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGV-K---ITEDGLEALIYIS 193 (226)
T ss_dssp HHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC-C---BCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHc
Confidence 3445555555445677888888765321 1 1112236889999999999988876532111 1 1135667788999
Q ss_pred CCChHHHHHHHHHh
Q 038448 312 NGLPLVAKSLGGLL 325 (385)
Q Consensus 312 ~glPLAi~~~~~~L 325 (385)
+|.|..+..+...+
T Consensus 194 ~g~~r~l~~~l~~~ 207 (226)
T 2chg_A 194 GGDFRKAINALQGA 207 (226)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 99998665544433
No 11
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.50 E-value=9.8e-07 Score=83.42 Aligned_cols=157 Identities=12% Similarity=0.048 Sum_probs=88.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcccccc----cc--ccceEEEEecCCC-CHHHHHHHHHHHhhcCCCCC---------
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSDVRVH----NH--FDLKAWTCVSEDF-DIIRVTKSILKSIASDQLVD--------- 222 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~----~~--F~~~~wv~vs~~~-~~~~~~~~il~~l~~~~~~~--------- 222 (385)
..+.+.|+|++|+||||||+.+++...-. .. ....+|++.+... +...++..++.++.+.....
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 123 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYI 123 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHH
Confidence 44689999999999999999998752111 01 2345677766655 67777777777763221100
Q ss_pred ------------ccchHHhhch--hhHhhH-hhhccCCCCCcEEEEEcCChhHHhhc------CCCCcccCCCCChhhHH
Q 038448 223 ------------DHDLNLLQKY--NDWTNR-SRLFEAGAPGSKIVFTTRNLGVAEKM------GPLPAYPLKELSNDDCL 281 (385)
Q Consensus 223 ------------~~~~~~l~~~--~~w~~l-~~~l~~~~~gs~IivTTR~~~va~~~------~~~~~~~l~~L~~~~a~ 281 (385)
.--+++++.. ..+... ...+.....+..||+||+.......+ .....+.+.+++.++..
T Consensus 124 ~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~ 203 (384)
T 2qby_B 124 DKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLK 203 (384)
T ss_dssp HHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHH
T ss_pred HHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHH
Confidence 0001111110 101112 22222222677889999865321111 11137899999999999
Q ss_pred hhhhccc---cCCCCCCCCccHHHHHHHHHHHcC---CChH-HHHH
Q 038448 282 SVFSPHS---LGEKDFSTHPSLKEIGEKIVKKCN---GLPL-VAKS 320 (385)
Q Consensus 282 ~Lf~~~a---~~~~~~~~~~~l~~~~~~i~~~c~---glPL-Ai~~ 320 (385)
.+|...+ |... ..++ +....|++.|+ |.|. |+..
T Consensus 204 ~il~~~~~~~~~~~--~~~~---~~~~~i~~~~~~~~G~~r~a~~~ 244 (384)
T 2qby_B 204 FILSKYAEYGLIKG--TYDD---EILSYIAAISAKEHGDARKAVNL 244 (384)
T ss_dssp HHHHHHHHHTSCTT--SCCS---HHHHHHHHHHHTTCCCHHHHHHH
T ss_pred HHHHHHHHhhcccC--CcCH---HHHHHHHHHHHhccCCHHHHHHH
Confidence 9998764 2211 1222 34566777776 8776 4433
No 12
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.45 E-value=3e-06 Score=80.14 Aligned_cols=154 Identities=11% Similarity=0.023 Sum_probs=91.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccc-cceEEEEecCCCCHHHHHHHHHHHhhcCCCCCccc-------------
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSDVRVHNHF-DLKAWTCVSEDFDIIRVTKSILKSIASDQLVDDHD------------- 225 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~------------- 225 (385)
.+.+.|+|++|+|||||++.+++. ..... ...+|++.+...+...++..++..++.........
T Consensus 44 ~~~~li~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~ 121 (389)
T 1fnn_A 44 YPRATLLGRPGTGKTVTLRKLWEL--YKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLR 121 (389)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH--HTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHh
Confidence 348999999999999999999875 22221 23567776676777788888888775432111101
Q ss_pred ---------hHHhh--chhhHhhHhhhccCC-C---CCcEEEEEcCChhHHhhcC-------CCCcccCCCCChhhHHhh
Q 038448 226 ---------LNLLQ--KYNDWTNRSRLFEAG-A---PGSKIVFTTRNLGVAEKMG-------PLPAYPLKELSNDDCLSV 283 (385)
Q Consensus 226 ---------~~~l~--~~~~w~~l~~~l~~~-~---~gs~IivTTR~~~va~~~~-------~~~~~~l~~L~~~~a~~L 283 (385)
+|+++ +......+...+... . .+..||+||+.......+. ....+.+.+++.++...+
T Consensus 122 ~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~ 201 (389)
T 1fnn_A 122 ERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDI 201 (389)
T ss_dssp HTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHH
T ss_pred hcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHH
Confidence 11111 122233333333221 1 4667888887765443322 113689999999999998
Q ss_pred hhccccCC-CCCCCCccHHHHHHHHHHHc---------CCChHHH
Q 038448 284 FSPHSLGE-KDFSTHPSLKEIGEKIVKKC---------NGLPLVA 318 (385)
Q Consensus 284 f~~~a~~~-~~~~~~~~l~~~~~~i~~~c---------~glPLAi 318 (385)
+...+... ... .--.+....|++.+ +|.|-.+
T Consensus 202 l~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~ 243 (389)
T 1fnn_A 202 LLDRAKAGLAEG---SYSEDILQMIADITGAQTPLDTNRGDARLA 243 (389)
T ss_dssp HHHHHHHHBCTT---SSCHHHHHHHHHHHSBSSTTCTTSCCHHHH
T ss_pred HHHHHHhhcCCC---CCCHHHHHHHHHHHhhcccCCCCCCcHHHH
Confidence 87764210 011 11245677888888 7876443
No 13
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.44 E-value=1.6e-06 Score=81.84 Aligned_cols=167 Identities=13% Similarity=0.090 Sum_probs=90.8
Q ss_pred hhHHHHHHHHhcCCCCCCCCceEEEEEcCCCCcHHHHHHHHhcccccccc------ccceEEEEecCCCCHHHHHHHHHH
Q 038448 140 KEKEETVKLLLRDDLRTDDGLSVIPIIGTGRIGKTTLAQLAYSDVRVHNH------FDLKAWTCVSEDFDIIRVTKSILK 213 (385)
Q Consensus 140 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~------F~~~~wv~vs~~~~~~~~~~~il~ 213 (385)
.+.+.+.+++.... .......+.|+|++|+||||||+.+++.. ... -...+|++.....+...++..++.
T Consensus 26 ~~~~~l~~~l~~~~--~~~~~~~vll~G~~G~GKT~l~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~ 101 (387)
T 2v1u_A 26 AELRRLAEVLAPAL--RGEKPSNALLYGLTGTGKTAVARLVLRRL--EARASSLGVLVKPIYVNARHRETPYRVASAIAE 101 (387)
T ss_dssp HHHHHHHHTTGGGT--SSCCCCCEEECBCTTSSHHHHHHHHHHHH--HHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--cCCCCCcEEEECCCCCCHHHHHHHHHHHH--HHHHhccCCCeEEEEEECCcCCCHHHHHHHHHH
Confidence 34445555553221 12345688999999999999999998752 221 123567777766677777777777
Q ss_pred HhhcCCCCCccc----------------------hHHhhch--h--hHhhHhhhcc---CC--CCCcEEEEEcCChhH--
Q 038448 214 SIASDQLVDDHD----------------------LNLLQKY--N--DWTNRSRLFE---AG--APGSKIVFTTRNLGV-- 260 (385)
Q Consensus 214 ~l~~~~~~~~~~----------------------~~~l~~~--~--~w~~l~~~l~---~~--~~gs~IivTTR~~~v-- 260 (385)
+++......... +|+++.. . ..+.+...+. .. ..+..+|.||+....
T Consensus 102 ~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~ 181 (387)
T 2v1u_A 102 AVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLGFVE 181 (387)
T ss_dssp HHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCSTTSS
T ss_pred HhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCchHh
Confidence 664422111000 1111110 0 1122222221 11 345677888876532
Q ss_pred ------HhhcCCCCcccCCCCChhhHHhhhhccc---cCCCCCCCCccHHHHHHHHHHHcC---CChH
Q 038448 261 ------AEKMGPLPAYPLKELSNDDCLSVFSPHS---LGEKDFSTHPSLKEIGEKIVKKCN---GLPL 316 (385)
Q Consensus 261 ------a~~~~~~~~~~l~~L~~~~a~~Lf~~~a---~~~~~~~~~~~l~~~~~~i~~~c~---glPL 316 (385)
...+. ...+.+.+++.++...++...+ +.... ..+ +....+++.++ |.|-
T Consensus 182 ~l~~~l~~r~~-~~~i~l~~l~~~~~~~il~~~~~~~~~~~~--~~~---~~~~~l~~~~~~~~G~~r 243 (387)
T 2v1u_A 182 NLEPRVKSSLG-EVELVFPPYTAPQLRDILETRAEEAFNPGV--LDP---DVVPLCAALAAREHGDAR 243 (387)
T ss_dssp SSCHHHHTTTT-SEECCBCCCCHHHHHHHHHHHHHHHBCTTT--BCS---SHHHHHHHHHHSSSCCHH
T ss_pred hhCHHHHhcCC-CeEEeeCCCCHHHHHHHHHHHHHhhccCCC--CCH---HHHHHHHHHHHHhccCHH
Confidence 11111 1368899999999999998764 22211 122 34556777777 9983
No 14
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.44 E-value=1.5e-07 Score=87.01 Aligned_cols=154 Identities=15% Similarity=0.038 Sum_probs=78.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCCCCHHHHHHHHHHHhhcCCCCCccchHHhh--chhhHhh
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSEDFDIIRVTKSILKSIASDQLVDDHDLNLLQ--KYNDWTN 237 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~--~~~~w~~ 237 (385)
...+.|+|++|+|||+||+.+++. ... ...+++.+.......+...+...+... ..--++++. .......
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~--~~~---~~~~~~~~~~~~~~~l~~~l~~~~~~~---~~l~lDEi~~l~~~~~~~ 109 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHE--LGV---NLRVTSGPAIEKPGDLAAILANSLEEG---DILFIDEIHRLSRQAEEH 109 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHH--HTC---CEEEECTTTCCSHHHHHHHHTTTCCTT---CEEEETTTTSCCHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH--hCC---CEEEEeccccCChHHHHHHHHHhccCC---CEEEEECCcccccchHHH
Confidence 356889999999999999999874 222 223454443333333332211101111 111122222 1111222
Q ss_pred HhhhccCC------------------CCCcEEEEEcCChh-HHhhcC-C-CCcccCCCCChhhHHhhhhccccCCCCCCC
Q 038448 238 RSRLFEAG------------------APGSKIVFTTRNLG-VAEKMG-P-LPAYPLKELSNDDCLSVFSPHSLGEKDFST 296 (385)
Q Consensus 238 l~~~l~~~------------------~~gs~IivTTR~~~-va~~~~-~-~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~ 296 (385)
+...+... .++..+|.||.... +...+. . ...+.+.+++.++...++...+.... ...
T Consensus 110 L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~-~~~ 188 (324)
T 1hqc_A 110 LYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLG-VRI 188 (324)
T ss_dssp HHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTT-CCC
T ss_pred HHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcC-CCC
Confidence 22221110 12345676665432 111111 1 14688999999998888876643211 111
Q ss_pred CccHHHHHHHHHHHcCCChHHHHHHHHHh
Q 038448 297 HPSLKEIGEKIVKKCNGLPLVAKSLGGLL 325 (385)
Q Consensus 297 ~~~l~~~~~~i~~~c~glPLAi~~~~~~L 325 (385)
-.+....++..|+|.|-.+..+...+
T Consensus 189 ---~~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 189 ---TEEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp ---CHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 13556778888999997776655443
No 15
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.43 E-value=8e-07 Score=83.82 Aligned_cols=155 Identities=14% Similarity=0.087 Sum_probs=83.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccc---cceEEEEecCCCCHHHHHHHHHHHhhcCCC---------------
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSDVRVHNHF---DLKAWTCVSEDFDIIRVTKSILKSIASDQL--------------- 220 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F---~~~~wv~vs~~~~~~~~~~~il~~l~~~~~--------------- 220 (385)
....+.|+|++|+||||||+.+++. ....+ ...+|++.....+...++..++.+++....
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~ 121 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSK--LHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVK 121 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHH--HHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH--HHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHH
Confidence 4568999999999999999999875 33332 235677655444444444444443322110
Q ss_pred -------C---CccchHHhhc---hhhHhhHhhhccC-CCCCcEEEEEcCChhHHhhcCC-------CCcccCCCCChhh
Q 038448 221 -------V---DDHDLNLLQK---YNDWTNRSRLFEA-GAPGSKIVFTTRNLGVAEKMGP-------LPAYPLKELSNDD 279 (385)
Q Consensus 221 -------~---~~~~~~~l~~---~~~w~~l~~~l~~-~~~gs~IivTTR~~~va~~~~~-------~~~~~l~~L~~~~ 279 (385)
. ..++.+.+.. .+.+..+...+.. ...+..+|+||+.......+.. ...+.+.+++.++
T Consensus 122 ~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~ 201 (386)
T 2qby_A 122 AVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEE 201 (386)
T ss_dssp HHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHH
T ss_pred HHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHH
Confidence 0 1111222111 2223333333321 2335567888886644322211 1368999999999
Q ss_pred HHhhhhccccC-CCCCCCCccHHHHHHHHHHHcC---CChHHH
Q 038448 280 CLSVFSPHSLG-EKDFSTHPSLKEIGEKIVKKCN---GLPLVA 318 (385)
Q Consensus 280 a~~Lf~~~a~~-~~~~~~~~~l~~~~~~i~~~c~---glPLAi 318 (385)
...++...+.. ....... .+....+++.++ |.|..+
T Consensus 202 ~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~ 241 (386)
T 2qby_A 202 LEDILTKRAQMAFKPGVLP---DNVIKLCAALAAREHGDARRA 241 (386)
T ss_dssp HHHHHHHHHHHHBCSSCSC---HHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhcCCHHHH
Confidence 99999875321 0011111 345566677776 888743
No 16
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.37 E-value=1.1e-06 Score=80.78 Aligned_cols=157 Identities=17% Similarity=0.092 Sum_probs=88.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcccccccccc-ceEEEEecCCCCHHHHHHHHHHHhhcC--C--C--CCccchHHhh--ch
Q 038448 162 VIPIIGTGRIGKTTLAQLAYSDVRVHNHFD-LKAWTCVSEDFDIIRVTKSILKSIASD--Q--L--VDDHDLNLLQ--KY 232 (385)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~il~~l~~~--~--~--~~~~~~~~l~--~~ 232 (385)
.+.++|++|+||||+|+.+++... ...+. ..++++.+...+. ..+.+++..+... . . ...--+++++ ..
T Consensus 44 ~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~ 121 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCLAHELL-GRSYADGVLELNASDDRGI-DVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA 121 (323)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHH-GGGHHHHEEEECTTSCCSH-HHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH
T ss_pred eEEEECcCCCCHHHHHHHHHHHhc-CCcccCCEEEecCccccCh-HHHHHHHHHHHhccccCCCCCceEEEEECcccCCH
Confidence 389999999999999999987521 11121 2344544443343 3344445444311 0 0 0111122222 22
Q ss_pred hhHhhHhhhccCCCCCcEEEEEcCChhH-Hhh-cCCCCcccCCCCChhhHHhhhhccccCCCCCCCCccHHHHHHHHHHH
Q 038448 233 NDWTNRSRLFEAGAPGSKIVFTTRNLGV-AEK-MGPLPAYPLKELSNDDCLSVFSPHSLGEKDFSTHPSLKEIGEKIVKK 310 (385)
Q Consensus 233 ~~w~~l~~~l~~~~~gs~IivTTR~~~v-a~~-~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~ 310 (385)
..++.+...+.....++.+|+||....- ... ......+.+.+++.++...++...+.... .. --.+....|++.
T Consensus 122 ~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~-~~---~~~~~~~~l~~~ 197 (323)
T 1sxj_B 122 GAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLED-VK---YTNDGLEAIIFT 197 (323)
T ss_dssp HHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHT-CC---BCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeecCCCHHHHHHHHHHHHHHcC-CC---CCHHHHHHHHHH
Confidence 3445555555544567788888865431 111 12224789999999999999887542111 01 113566789999
Q ss_pred cCCChH-HHHHHHHH
Q 038448 311 CNGLPL-VAKSLGGL 324 (385)
Q Consensus 311 c~glPL-Ai~~~~~~ 324 (385)
|+|.|. |+..+...
T Consensus 198 ~~G~~r~a~~~l~~~ 212 (323)
T 1sxj_B 198 AEGDMRQAINNLQST 212 (323)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHH
Confidence 999995 45544443
No 17
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.02 E-value=1.6e-05 Score=73.05 Aligned_cols=157 Identities=14% Similarity=0.063 Sum_probs=84.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccc-cceEEEEecCCCCHHHHHHHHHHHhhcCC-----CCCccchHHhh--ch
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHNHF-DLKAWTCVSEDFDIIRVTKSILKSIASDQ-----LVDDHDLNLLQ--KY 232 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~~~~~il~~l~~~~-----~~~~~~~~~l~--~~ 232 (385)
..+.++|++|+||||+|+.+++... ...+ ...+.+..+...+. ..+...+..+.... ....--++++. ..
T Consensus 47 ~~~ll~G~~G~GKT~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~ 124 (327)
T 1iqp_A 47 PHLLFAGPPGVGKTTAALALARELF-GENWRHNFLELNASDERGI-NVIREKVKEFARTKPIGGASFKIIFLDEADALTQ 124 (327)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHH-GGGHHHHEEEEETTCHHHH-HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCH
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhc-CCcccCceEEeeccccCch-HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCH
Confidence 3489999999999999999987521 1111 12233333322111 11222222221110 00111122222 23
Q ss_pred hhHhhHhhhccCCCCCcEEEEEcCChhH-Hhhc-CCCCcccCCCCChhhHHhhhhccccCCCCCCCCccHHHHHHHHHHH
Q 038448 233 NDWTNRSRLFEAGAPGSKIVFTTRNLGV-AEKM-GPLPAYPLKELSNDDCLSVFSPHSLGEKDFSTHPSLKEIGEKIVKK 310 (385)
Q Consensus 233 ~~w~~l~~~l~~~~~gs~IivTTR~~~v-a~~~-~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~ 310 (385)
+.++.+...+.....++++|+||....- ...+ .....+.+.+++.++...++...+....- .--.+....|++.
T Consensus 125 ~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~~~~~----~~~~~~~~~l~~~ 200 (327)
T 1iqp_A 125 DAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGL----ELTEEGLQAILYI 200 (327)
T ss_dssp HHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHTTTC----EECHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEecCCCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHH
Confidence 3455566555554567788888876431 1111 11136889999999999888766432111 1113566788999
Q ss_pred cCCChHHHHHHHH
Q 038448 311 CNGLPLVAKSLGG 323 (385)
Q Consensus 311 c~glPLAi~~~~~ 323 (385)
++|.|..+..+..
T Consensus 201 ~~g~~r~~~~~l~ 213 (327)
T 1iqp_A 201 AEGDMRRAINILQ 213 (327)
T ss_dssp HTTCHHHHHHHHH
T ss_pred CCCCHHHHHHHHH
Confidence 9999986655443
No 18
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.97 E-value=6.7e-06 Score=72.02 Aligned_cols=156 Identities=12% Similarity=0.153 Sum_probs=81.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCCCCHHHHHHHHHHHhhcCCCCCccchHHhhchhhH-hhH
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSEDFDIIRVTKSILKSIASDQLVDDHDLNLLQKYNDW-TNR 238 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~~~w-~~l 238 (385)
...+.|+|++|+||||||+.+++. .........|++.+...+. +..++..+.....-..++.+.+.....| +.+
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~vliiDe~~~~~~~~~~~~~l 126 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACAR--ANELERRSFYIPLGIHASI---STALLEGLEQFDLICIDDVDAVAGHPLWEEAI 126 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEGGGGGGS---CGGGGTTGGGSSEEEEETGGGGTTCHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEHHHHHHH---HHHHHHhccCCCEEEEeccccccCCHHHHHHH
Confidence 467889999999999999999875 2222334567765542110 1111111211111012223332222222 222
Q ss_pred hhhccC-CCCCc-EEEEEcCChh---------HHhhcCCCCcccCCCCChhhHHhhhhccccCCCCCCCCccHHHHHHHH
Q 038448 239 SRLFEA-GAPGS-KIVFTTRNLG---------VAEKMGPLPAYPLKELSNDDCLSVFSPHSLGEKDFSTHPSLKEIGEKI 307 (385)
Q Consensus 239 ~~~l~~-~~~gs-~IivTTR~~~---------va~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~l~~~~~~i 307 (385)
...+.. ...+. ++|+||+... +...+.....+.+.+++.++...++...+.... ... -.+....|
T Consensus 127 ~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~-~~~---~~~~~~~l 202 (242)
T 3bos_A 127 FDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRG-LQL---PEDVGRFL 202 (242)
T ss_dssp HHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTT-CCC---CHHHHHHH
T ss_pred HHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcC-CCC---CHHHHHHH
Confidence 222211 01122 4777776322 222221225688999999999998877652111 111 14566788
Q ss_pred HHHcCCChHHHHHHHHH
Q 038448 308 VKKCNGLPLVAKSLGGL 324 (385)
Q Consensus 308 ~~~c~glPLAi~~~~~~ 324 (385)
++.++|.+-.+..+...
T Consensus 203 ~~~~~g~~r~l~~~l~~ 219 (242)
T 3bos_A 203 LNRMARDLRTLFDVLDR 219 (242)
T ss_dssp HHHTTTCHHHHHHHHHH
T ss_pred HHHccCCHHHHHHHHHH
Confidence 89999988766654443
No 19
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.72 E-value=0.0001 Score=67.35 Aligned_cols=157 Identities=11% Similarity=0.021 Sum_probs=83.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcccccccccc-ceEEEEecCCCC---HHHHHHHHHHHhhcC-CCCCccchHHhh--chh
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHNHFD-LKAWTCVSEDFD---IIRVTKSILKSIASD-QLVDDHDLNLLQ--KYN 233 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~vs~~~~---~~~~~~~il~~l~~~-~~~~~~~~~~l~--~~~ 233 (385)
..+.++|++|+|||++|+.+.+... ...+. ..+.++.+.... ....+.......... .....--+++.. ...
T Consensus 39 ~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~ 117 (319)
T 2chq_A 39 PHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTAD 117 (319)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEETTSTTCTTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHH
T ss_pred CeEEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEeCccccChHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHH
Confidence 3489999999999999999887420 11111 123344433222 222333332111110 000111122222 223
Q ss_pred hHhhHhhhccCCCCCcEEEEEcCChh-HHhh-cCCCCcccCCCCChhhHHhhhhccccCCCCCCCCccHHHHHHHHHHHc
Q 038448 234 DWTNRSRLFEAGAPGSKIVFTTRNLG-VAEK-MGPLPAYPLKELSNDDCLSVFSPHSLGEKDFSTHPSLKEIGEKIVKKC 311 (385)
Q Consensus 234 ~w~~l~~~l~~~~~gs~IivTTR~~~-va~~-~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~c 311 (385)
..+.+...+.....++.+|+||.... +... ......+.+.+++.++...++...+.... .. --.+....++..+
T Consensus 118 ~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~-~~---i~~~~l~~l~~~~ 193 (319)
T 2chq_A 118 AQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEG-VK---ITEDGLEALIYIS 193 (319)
T ss_dssp HHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEECCCCCHHHHHHHHHHHHHTTC-CC---BCHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEecCCCHHHHHHHHHHHHHHcC-CC---CCHHHHHHHHHHc
Confidence 34556656655456778888876543 1111 12224689999999999888876542211 11 1135567788899
Q ss_pred CCChHHHHHHH
Q 038448 312 NGLPLVAKSLG 322 (385)
Q Consensus 312 ~glPLAi~~~~ 322 (385)
+|.|..+....
T Consensus 194 ~G~~r~~~~~l 204 (319)
T 2chq_A 194 GGDFRKAINAL 204 (319)
T ss_dssp TTCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 99987655443
No 20
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.69 E-value=6.2e-05 Score=72.55 Aligned_cols=149 Identities=13% Similarity=0.055 Sum_probs=80.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcccccccccc--ceEEEEecCCCCHHHHHHHHHHHhhcC-----------CC--CCcc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFD--LKAWTCVSEDFDIIRVTKSILKSIASD-----------QL--VDDH 224 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~~~~~il~~l~~~-----------~~--~~~~ 224 (385)
...+.|+|++|+||||||+.+++. ....|. ..++++... +..++...+... .. --.+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~--l~~~~~~~~v~~v~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~vL~ID 201 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITSEK------FLNDLVDSMKEGKLNEFREKYRKKVDILLID 201 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHH--HHHHCCSSCEEEEEHHH------HHHHHHHHHHTTCHHHHHHHHTTTCSEEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeHHH------HHHHHHHHHHcccHHHHHHHhcCCCCEEEEe
Confidence 567899999999999999999885 333332 234554332 223333222211 11 0112
Q ss_pred chHHhhch-hhHhhHhhhccC-CCCCcEEEEEcCCh---------hHHhhcCCCCcccCCCCChhhHHhhhhccccCCCC
Q 038448 225 DLNLLQKY-NDWTNRSRLFEA-GAPGSKIVFTTRNL---------GVAEKMGPLPAYPLKELSNDDCLSVFSPHSLGEKD 293 (385)
Q Consensus 225 ~~~~l~~~-~~w~~l~~~l~~-~~~gs~IivTTR~~---------~va~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~ 293 (385)
+.+.+... ...+.+...+.. ...|..||+||... .+...+.....+.+.+++.++-..++...+....
T Consensus 202 Ei~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~- 280 (440)
T 2z4s_A 202 DVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEH- 280 (440)
T ss_dssp CGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHT-
T ss_pred CcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcC-
Confidence 22222221 122223333321 23567888888752 2333343345688999999999988877652111
Q ss_pred CCCCccHHHHHHHHHHHcCCChHHHHH
Q 038448 294 FSTHPSLKEIGEKIVKKCNGLPLVAKS 320 (385)
Q Consensus 294 ~~~~~~l~~~~~~i~~~c~glPLAi~~ 320 (385)
...++ +....|+..+.|.+-.+.-
T Consensus 281 ~~i~~---e~l~~la~~~~gn~R~l~~ 304 (440)
T 2z4s_A 281 GELPE---EVLNFVAENVDDNLRRLRG 304 (440)
T ss_dssp CCCCT---THHHHHHHHCCSCHHHHHH
T ss_pred CCCCH---HHHHHHHHhcCCCHHHHHH
Confidence 11122 3356677888887755443
No 21
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.68 E-value=0.00025 Score=66.40 Aligned_cols=158 Identities=13% Similarity=0.105 Sum_probs=85.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcccccccc-------------------ccceEEEEecCCCCHHHHHHHHHHHhhcCCCC
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHNH-------------------FDLKAWTCVSEDFDIIRVTKSILKSIASDQLV 221 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-------------------F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~ 221 (385)
..+.|+|++|+||||+|+.+.+....... +...+.+..+.... ...+..++..+......
T Consensus 39 ~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~ 117 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTK-VEDTRDLLDNVQYAPAR 117 (373)
T ss_dssp SEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEEEETTCSCC-SSCHHHHHHHTTSCCSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceEEecccccCC-HHHHHHHHHHHhhcccc
Confidence 57889999999999999988764211110 00123333222111 11233444444322110
Q ss_pred ---CccchHHhh--chhhHhhHhhhccCCCCCcEEEEEcCChh-HHhh-cCCCCcccCCCCChhhHHhhhhccccCCCCC
Q 038448 222 ---DDHDLNLLQ--KYNDWTNRSRLFEAGAPGSKIVFTTRNLG-VAEK-MGPLPAYPLKELSNDDCLSVFSPHSLGEKDF 294 (385)
Q Consensus 222 ---~~~~~~~l~--~~~~w~~l~~~l~~~~~gs~IivTTR~~~-va~~-~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~ 294 (385)
..--+++++ ....++.+...+.....+..+|++|.... +... ......+.+.+++.++...++...+-... .
T Consensus 118 ~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~-~ 196 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEH-I 196 (373)
T ss_dssp SSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHT-C
T ss_pred CCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcC-C
Confidence 011122222 23345556666655455667777776432 1111 12225688999999999888876542111 1
Q ss_pred CCCccHHHHHHHHHHHcCCChHHHHHHHH
Q 038448 295 STHPSLKEIGEKIVKKCNGLPLVAKSLGG 323 (385)
Q Consensus 295 ~~~~~l~~~~~~i~~~c~glPLAi~~~~~ 323 (385)
. --.+....|++.++|.|..+..+..
T Consensus 197 ~---~~~~a~~~l~~~~~G~~r~~~~~l~ 222 (373)
T 1jr3_A 197 A---HEPRALQLLARAAEGSLRDALSLTD 222 (373)
T ss_dssp C---BCHHHHHHHHHHSSSCHHHHHHHHH
T ss_pred C---CCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 1 1134567899999999987766543
No 22
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.50 E-value=0.00039 Score=64.51 Aligned_cols=173 Identities=13% Similarity=0.066 Sum_probs=88.1
Q ss_pred hhhHHHHHHHHhcCCCCCCCCceEEEEEcCCCCcHHHHHHHHhcccccccccc-ceEEEEecCCCCHHHHHHHHHHHhhc
Q 038448 139 DKEKEETVKLLLRDDLRTDDGLSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFD-LKAWTCVSEDFDIIRVTKSILKSIAS 217 (385)
Q Consensus 139 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~il~~l~~ 217 (385)
+..++.+..++... ....+.++|++|+||||+|+.+.+.......+. ....++.+....... +.+.+..+..
T Consensus 43 ~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 115 (353)
T 1sxj_D 43 DHAVTVLKKTLKSA------NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISI-VREKVKNFAR 115 (353)
T ss_dssp CTTHHHHHHHTTCT------TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHH-HTTHHHHHHH
T ss_pred HHHHHHHHHHHhcC------CCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHH-HHHHHHHHhh
Confidence 33445555555332 223388999999999999999987521111121 123333333223322 2222222221
Q ss_pred CC---------------CCCccchHHhh--chhhHhhHhhhccCCCCCcEEEEEcCChh-HHhhc-CCCCcccCCCCChh
Q 038448 218 DQ---------------LVDDHDLNLLQ--KYNDWTNRSRLFEAGAPGSKIVFTTRNLG-VAEKM-GPLPAYPLKELSND 278 (385)
Q Consensus 218 ~~---------------~~~~~~~~~l~--~~~~w~~l~~~l~~~~~gs~IivTTR~~~-va~~~-~~~~~~~l~~L~~~ 278 (385)
.. ....--++++. .......+...+.......++|++|.... +...+ .....+.+.+++.+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~~~~~~~~ 195 (353)
T 1sxj_D 116 LTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDAS 195 (353)
T ss_dssp SCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEECCCCCHH
T ss_pred hcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceEEeCCCCHH
Confidence 10 00011122222 22233445544444445567777775432 11111 11136789999999
Q ss_pred hHHhhhhccccCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHH
Q 038448 279 DCLSVFSPHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVAKSLG 322 (385)
Q Consensus 279 ~a~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~c~glPLAi~~~~ 322 (385)
+....+...+.... ...+ .+....|++.++|.|-.+..+.
T Consensus 196 ~~~~~l~~~~~~~~-~~i~---~~~l~~l~~~~~G~~r~~~~~l 235 (353)
T 1sxj_D 196 NAIDRLRFISEQEN-VKCD---DGVLERILDISAGDLRRGITLL 235 (353)
T ss_dssp HHHHHHHHHHHTTT-CCCC---HHHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 98888876542211 1111 4567889999999998655443
No 23
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.48 E-value=0.00014 Score=60.87 Aligned_cols=38 Identities=24% Similarity=0.297 Sum_probs=27.5
Q ss_pred hhHHHHHHHHhcCCCCCCCCceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 140 KEKEETVKLLLRDDLRTDDGLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 140 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
...+.+.+++.. .....+.|+|++|+|||+||+.+++.
T Consensus 29 ~~~~~l~~~l~~------~~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 29 EEIRRTIQVLQR------RTKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp HHHHHHHHHHTS------SSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc------CCCCceEEECCCCCCHHHHHHHHHHH
Confidence 344555555533 23356789999999999999998874
No 24
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.48 E-value=0.0019 Score=59.61 Aligned_cols=150 Identities=9% Similarity=0.015 Sum_probs=85.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcccccc--------------------ccccceEEEEec---CCCCHHHHHHHHHHHhh
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSDVRVH--------------------NHFDLKAWTCVS---EDFDIIRVTKSILKSIA 216 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~--------------------~~F~~~~wv~vs---~~~~~~~~~~~il~~l~ 216 (385)
...+.++|++|+|||++|+.+.....-. .+++ ..++... ..... +..+++.+.+.
T Consensus 24 ~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~~~~~~~i-~~ir~l~~~~~ 101 (334)
T 1a5t_A 24 HHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAPEKGKNTLGV-DAVREVTEKLN 101 (334)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECCCTTCSSBCH-HHHHHHHHHTT
T ss_pred ceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccccCCCCCH-HHHHHHHHHHh
Confidence 4678999999999999998886532100 1122 3445432 22333 33456666664
Q ss_pred cCCCCC---ccchHHhh--chhhHhhHhhhccCCCCCcEEEEEcCChh-HHhhc-CCCCcccCCCCChhhHHhhhhcccc
Q 038448 217 SDQLVD---DHDLNLLQ--KYNDWTNRSRLFEAGAPGSKIVFTTRNLG-VAEKM-GPLPAYPLKELSNDDCLSVFSPHSL 289 (385)
Q Consensus 217 ~~~~~~---~~~~~~l~--~~~~w~~l~~~l~~~~~gs~IivTTR~~~-va~~~-~~~~~~~l~~L~~~~a~~Lf~~~a~ 289 (385)
...... .--+++.. ..+..+.+...+.....++.+|++|.+.. +...+ +....+.+.+++.++....+....
T Consensus 102 ~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~- 180 (334)
T 1a5t_A 102 EHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV- 180 (334)
T ss_dssp SCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC-
T ss_pred hccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc-
Confidence 332110 01112111 23344556666655455677777776543 32222 222568999999999988887664
Q ss_pred CCCCCCCCccHHHHHHHHHHHcCCChHHHHH
Q 038448 290 GEKDFSTHPSLKEIGEKIVKKCNGLPLVAKS 320 (385)
Q Consensus 290 ~~~~~~~~~~l~~~~~~i~~~c~glPLAi~~ 320 (385)
. .. .+.+..+++.++|.|..+..
T Consensus 181 ---~--~~---~~~~~~l~~~s~G~~r~a~~ 203 (334)
T 1a5t_A 181 ---T--MS---QDALLAALRLSAGSPGAALA 203 (334)
T ss_dssp ---C--CC---HHHHHHHHHHTTTCHHHHHH
T ss_pred ---C--CC---HHHHHHHHHHcCCCHHHHHH
Confidence 1 11 24457788999999965543
No 25
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.43 E-value=0.00057 Score=62.50 Aligned_cols=77 Identities=9% Similarity=-0.034 Sum_probs=49.2
Q ss_pred hhhHHHHHHHHhcCCCCCCCCceEEEEEcCCCCcHHHHHHHHhccccccc------cccceEEEEecCCCCHHHHHHHHH
Q 038448 139 DKEKEETVKLLLRDDLRTDDGLSVIPIIGTGRIGKTTLAQLAYSDVRVHN------HFDLKAWTCVSEDFDIIRVTKSIL 212 (385)
Q Consensus 139 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~------~F~~~~wv~vs~~~~~~~~~~~il 212 (385)
+++.+.|...|.... ..+....+-|+|++|+|||++++.+.+...... .| ..+.++...-.+...++..|+
T Consensus 26 e~E~~~i~~~L~~~i--~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~-~~v~INc~~~~t~~~~~~~I~ 102 (318)
T 3te6_A 26 VEDFTRIFLPIYDSL--MSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIF-DYIHIDALELAGMDALYEKIW 102 (318)
T ss_dssp HHHHHHHHHHHHHHH--HTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCE-EEEEEETTCCC--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHh--cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCce-EEEEEeccccCCHHHHHHHHH
Confidence 555566655554321 123557889999999999999999998632111 12 244555555567778888888
Q ss_pred HHhhcC
Q 038448 213 KSIASD 218 (385)
Q Consensus 213 ~~l~~~ 218 (385)
.++.+.
T Consensus 103 ~~L~g~ 108 (318)
T 3te6_A 103 FAISKE 108 (318)
T ss_dssp HHHSCC
T ss_pred HHhcCC
Confidence 888654
No 26
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.34 E-value=0.0012 Score=60.00 Aligned_cols=128 Identities=11% Similarity=0.031 Sum_probs=66.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcccccccccc--ceEEEEecCC----C-CHHHHHHHHHHHhhcCCCCCccchHHhh
Q 038448 158 DGLSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFD--LKAWTCVSED----F-DIIRVTKSILKSIASDQLVDDHDLNLLQ 230 (385)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~--~~~wv~vs~~----~-~~~~~~~~il~~l~~~~~~~~~~~~~l~ 230 (385)
.....+.|+|++|+|||+||+.+.+......... ..+.++.+.- + ........++......-. ..++.+.+-
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~vl-~iDEid~l~ 143 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRAMGGVL-FIDEAYYLY 143 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTCCSSTTCHHHHHHHHHHHHTTSEE-EEETGGGSC
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhhhhcccccHHHHHHHHHhcCCCEE-EEEChhhhc
Confidence 3456789999999999999998776421111111 1223332211 1 122233444444322111 223333221
Q ss_pred --------chhhHhhHhhhccCCCCCcEEEEEcCChhH----------HhhcCCCCcccCCCCChhhHHhhhhccc
Q 038448 231 --------KYNDWTNRSRLFEAGAPGSKIVFTTRNLGV----------AEKMGPLPAYPLKELSNDDCLSVFSPHS 288 (385)
Q Consensus 231 --------~~~~w~~l~~~l~~~~~gs~IivTTR~~~v----------a~~~~~~~~~~l~~L~~~~a~~Lf~~~a 288 (385)
.......+...+.....+..||.||..... ...+ ...+.+.+++.++-..++...+
T Consensus 144 ~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~--~~~i~~~~~~~~~~~~il~~~l 217 (309)
T 3syl_A 144 RPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFRSRI--AHHIEFPDYSDEELFEIAGHML 217 (309)
T ss_dssp CCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTHHHHE--EEEEEECCCCHHHHHHHHHHHH
T ss_pred cCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHHHHhC--CeEEEcCCcCHHHHHHHHHHHH
Confidence 223334455555544556678888864332 2221 1467888888888888776654
No 27
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.19 E-value=0.0012 Score=60.91 Aligned_cols=153 Identities=16% Similarity=0.114 Sum_probs=76.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCCCCHHHHHHHHHHHhhcCCCCCccchHHhhchhhHhhH
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSEDFDIIRVTKSILKSIASDQLVDDHDLNLLQKYNDWTNR 238 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~~~w~~l 238 (385)
....|.|+|++|+|||+||+.+.+. ....| +.++.+..... .-+..++........-..++++.+. ......+
T Consensus 54 ~~~~vll~G~~GtGKT~la~~ia~~--~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~vl~lDEi~~l~-~~~~~~L 126 (338)
T 3pfi_A 54 CLDHILFSGPAGLGKTTLANIISYE--MSANI---KTTAAPMIEKS-GDLAAILTNLSEGDILFIDEIHRLS-PAIEEVL 126 (338)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH--TTCCE---EEEEGGGCCSH-HHHHHHHHTCCTTCEEEEETGGGCC-HHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH--hCCCe---EEecchhccch-hHHHHHHHhccCCCEEEEechhhcC-HHHHHHH
Confidence 3456899999999999999999774 22222 22332222222 2233333332211110112222211 1122222
Q ss_pred hhhccCC------------------CCCcEEEEEcCChhH-Hhhc--CCCCcccCCCCChhhHHhhhhccccCCCCCCCC
Q 038448 239 SRLFEAG------------------APGSKIVFTTRNLGV-AEKM--GPLPAYPLKELSNDDCLSVFSPHSLGEKDFSTH 297 (385)
Q Consensus 239 ~~~l~~~------------------~~gs~IivTTR~~~v-a~~~--~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~ 297 (385)
...+... .++..+|.||..... ...+ .....+.+.+++.++...++...+-... .
T Consensus 127 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~-~--- 202 (338)
T 3pfi_A 127 YPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLN-K--- 202 (338)
T ss_dssp HHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT-C---
T ss_pred HHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcC-C---
Confidence 2222111 112456666654321 1111 1124689999999999888876642211 1
Q ss_pred ccHHHHHHHHHHHcCCChHHHHHHH
Q 038448 298 PSLKEIGEKIVKKCNGLPLVAKSLG 322 (385)
Q Consensus 298 ~~l~~~~~~i~~~c~glPLAi~~~~ 322 (385)
.--.+....|++.+.|.|-.+..+.
T Consensus 203 ~~~~~~~~~l~~~~~G~~r~l~~~l 227 (338)
T 3pfi_A 203 TCEEKAALEIAKRSRSTPRIALRLL 227 (338)
T ss_dssp EECHHHHHHHHHTTTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCcCHHHHHHHH
Confidence 1124566778888999985544433
No 28
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.15 E-value=0.0011 Score=59.68 Aligned_cols=154 Identities=16% Similarity=0.131 Sum_probs=78.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCC---C--CHHHHHHHHHHHhhcCCC--CCccchHHhh-
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSED---F--DIIRVTKSILKSIASDQL--VDDHDLNLLQ- 230 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~---~--~~~~~~~~il~~l~~~~~--~~~~~~~~l~- 230 (385)
...-+.|+|++|+|||+||+.+++. ....| +.++.+.- + .....+..++........ -..++++.+.
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~--~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~ 124 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATE--TNATF---IRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAA 124 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHH--TTCEE---EEEEGGGGCCCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHB
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEehHHHHHhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcc
Confidence 3456899999999999999999875 22222 22332221 1 123444455544433221 0223333331
Q ss_pred ---------ch---hhHhhHhhhcc--CCCCCcEEEEEcCChhHHh--hcC---CCCcccCCCCChhhHHhhhhccccCC
Q 038448 231 ---------KY---NDWTNRSRLFE--AGAPGSKIVFTTRNLGVAE--KMG---PLPAYPLKELSNDDCLSVFSPHSLGE 291 (385)
Q Consensus 231 ---------~~---~~w~~l~~~l~--~~~~gs~IivTTR~~~va~--~~~---~~~~~~l~~L~~~~a~~Lf~~~a~~~ 291 (385)
.. .....+...+. ....+..||.||....... ... ....+.+..++.++..++|...+...
T Consensus 125 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~ 204 (285)
T 3h4m_A 125 KRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKM 204 (285)
T ss_dssp CCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTS
T ss_pred cCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcC
Confidence 11 11122222222 1233566777887543221 111 11358899999999999988765322
Q ss_pred CCCCCCccHHHHHHHHHHHcCC-ChHHHHHHH
Q 038448 292 KDFSTHPSLKEIGEKIVKKCNG-LPLVAKSLG 322 (385)
Q Consensus 292 ~~~~~~~~l~~~~~~i~~~c~g-lPLAi~~~~ 322 (385)
. ...... ...++..+.| .|-.+..+.
T Consensus 205 ~-~~~~~~----~~~l~~~~~g~~~~~i~~l~ 231 (285)
T 3h4m_A 205 N-LAEDVN----LEEIAKMTEGCVGAELKAIC 231 (285)
T ss_dssp C-BCTTCC----HHHHHHHCTTCCHHHHHHHH
T ss_pred C-CCCcCC----HHHHHHHcCCCCHHHHHHHH
Confidence 1 111122 3557777777 454555443
No 29
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.14 E-value=0.0019 Score=63.45 Aligned_cols=152 Identities=12% Similarity=0.116 Sum_probs=76.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCCCCHHHHHHHHHHHhhcCC-----------------CC
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSEDFDIIRVTKSILKSIASDQ-----------------LV 221 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~-----------------~~ 221 (385)
..+.+.|+|++|+||||+|+.+.+.. .+. .+.++.+..... .++...+....... ..
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l----~~~-~i~in~s~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQEL----GYD-ILEQNASDVRSK-TLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKH 149 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHT----TCE-EEEECTTSCCCH-HHHHHTGGGGTTBCCSTTTTTC----CCSSTTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc----CCC-EEEEeCCCcchH-HHHHHHHHHHhccccHHHHHhhhhhhhhccCCC
Confidence 35789999999999999999998852 121 233444443332 23333222211100 00
Q ss_pred ---CccchHHhhc--hhhHhhHhhhccCCCCCcEEEEEcCChh---HHhhcCCCCcccCCCCChhhHHhhhhccccCCCC
Q 038448 222 ---DDHDLNLLQK--YNDWTNRSRLFEAGAPGSKIVFTTRNLG---VAEKMGPLPAYPLKELSNDDCLSVFSPHSLGEKD 293 (385)
Q Consensus 222 ---~~~~~~~l~~--~~~w~~l~~~l~~~~~gs~IivTTR~~~---va~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~ 293 (385)
..++.+.+.. ...+..+...+.. .+..||+++.+.. +.........+.+.+++.++...++...+....-
T Consensus 150 ~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~ 227 (516)
T 1sxj_A 150 FVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKF 227 (516)
T ss_dssp EEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTC
T ss_pred eEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCC
Confidence 0111121111 1123334433332 2334666554322 2221112245789999999988887765432111
Q ss_pred CCCCccHHHHHHHHHHHcCC-ChHHHHHHH
Q 038448 294 FSTHPSLKEIGEKIVKKCNG-LPLVAKSLG 322 (385)
Q Consensus 294 ~~~~~~l~~~~~~i~~~c~g-lPLAi~~~~ 322 (385)
..++ +....|++.++| ++-++..+.
T Consensus 228 -~i~~---~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 228 -KLDP---NVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp -CCCT---THHHHHHHHTTTCHHHHHHHHT
T ss_pred -CCCH---HHHHHHHHHcCCcHHHHHHHHH
Confidence 1112 345678888988 555555543
No 30
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.07 E-value=0.0015 Score=60.05 Aligned_cols=143 Identities=12% Similarity=0.104 Sum_probs=72.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCCCCHHHHHHHHHHHhhc------------CCCCCccchH
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSEDFDIIRVTKSILKSIAS------------DQLVDDHDLN 227 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~------------~~~~~~~~~~ 227 (385)
...+.|+|++|+||||||+.+++.. ...-...++++.. .+...+...+.. ...--.++++
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~--~~~~~~~~~i~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~vL~iDEi~ 108 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEA--KKRGYRVIYSSAD------DFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQ 108 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHH--HHTTCCEEEEEHH------HHHHHHHHHHHHTCHHHHHHHHHTCSEEEEECGG
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH--HHCCCEEEEEEHH------HHHHHHHHHHHcCcHHHHHHHhcCCCEEEEcCcc
Confidence 4678899999999999999998752 1111123455432 222222222211 1100112222
Q ss_pred HhhchhhH-hhHhhhccC-CCCCcEEEEEcCCh---------hHHhhcCCCCcccCCCCChhhHHhhhhccccCCCCCCC
Q 038448 228 LLQKYNDW-TNRSRLFEA-GAPGSKIVFTTRNL---------GVAEKMGPLPAYPLKELSNDDCLSVFSPHSLGEKDFST 296 (385)
Q Consensus 228 ~l~~~~~w-~~l~~~l~~-~~~gs~IivTTR~~---------~va~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~ 296 (385)
.+.....+ +.+...+.. ...|..||+||... .+...+.....+.+.+ +.++...++...+.... ...
T Consensus 109 ~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~-~~l 186 (324)
T 1l8q_A 109 FLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFN-LEL 186 (324)
T ss_dssp GGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTT-CCC
T ss_pred cccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcC-CCC
Confidence 22221122 223333221 12456788887632 2222333334588999 99998888877653211 111
Q ss_pred CccHHHHHHHHHHHcCCChH
Q 038448 297 HPSLKEIGEKIVKKCNGLPL 316 (385)
Q Consensus 297 ~~~l~~~~~~i~~~c~glPL 316 (385)
+ .+....|++.+ |.+-
T Consensus 187 ~---~~~l~~l~~~~-g~~r 202 (324)
T 1l8q_A 187 R---KEVIDYLLENT-KNVR 202 (324)
T ss_dssp C---HHHHHHHHHHC-SSHH
T ss_pred C---HHHHHHHHHhC-CCHH
Confidence 1 34566677777 6543
No 31
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.05 E-value=0.0024 Score=59.26 Aligned_cols=87 Identities=13% Similarity=0.116 Sum_probs=50.3
Q ss_pred hHhhHhhhccCCCCCcEEEEEcCChh-HHhhc-CCCCcccCCCCChhhHHhhhhccccCCCCCCCCccHHHHHHHHHHHc
Q 038448 234 DWTNRSRLFEAGAPGSKIVFTTRNLG-VAEKM-GPLPAYPLKELSNDDCLSVFSPHSLGEKDFSTHPSLKEIGEKIVKKC 311 (385)
Q Consensus 234 ~w~~l~~~l~~~~~gs~IivTTR~~~-va~~~-~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~c 311 (385)
..+.+...+.....++.+|++|.+.. +...+ .....+.+.+++.++....+...+-...- ..+ -.+....|++.+
T Consensus 150 ~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~--~~~~l~~i~~~~ 226 (354)
T 1sxj_E 150 AQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERI-QLE--TKDILKRIAQAS 226 (354)
T ss_dssp HHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC-EEC--CSHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCC-CCC--cHHHHHHHHHHc
Confidence 34445544443345677887776532 22212 22256889999999998888765421111 111 024567788999
Q ss_pred CCChHHHHHHHH
Q 038448 312 NGLPLVAKSLGG 323 (385)
Q Consensus 312 ~glPLAi~~~~~ 323 (385)
+|.+-.+..+..
T Consensus 227 ~G~~r~a~~~l~ 238 (354)
T 1sxj_E 227 NGNLRVSLLMLE 238 (354)
T ss_dssp TTCHHHHHHHHT
T ss_pred CCCHHHHHHHHH
Confidence 998866555443
No 32
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.99 E-value=0.0039 Score=55.57 Aligned_cols=143 Identities=17% Similarity=0.176 Sum_probs=70.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCCC---CH---HHHHHHHHHHhhcCCC--CCccchHHh
Q 038448 158 DGLSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSEDF---DI---IRVTKSILKSIASDQL--VDDHDLNLL 229 (385)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~---~~---~~~~~~il~~l~~~~~--~~~~~~~~l 229 (385)
.....+.|+|++|+|||+||+.+.+. ....| +.++.+..+ .. ...+..++........ -..++++.+
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~--~~~~~---~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l 136 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE--SNFPF---IKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERL 136 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH--HTCSE---EEEECGGGCTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEeCHHHhcCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhh
Confidence 35678899999999999999999874 22121 222222111 11 1233344443322111 023344443
Q ss_pred h---------chhhHhhHhhhccC---CCCCcEEEEEcCChhHHhhc---CC-CCcccCCCCCh-hhHHhhhhccccCCC
Q 038448 230 Q---------KYNDWTNRSRLFEA---GAPGSKIVFTTRNLGVAEKM---GP-LPAYPLKELSN-DDCLSVFSPHSLGEK 292 (385)
Q Consensus 230 ~---------~~~~w~~l~~~l~~---~~~gs~IivTTR~~~va~~~---~~-~~~~~l~~L~~-~~a~~Lf~~~a~~~~ 292 (385)
. .......+...+.. ......||.||......... +. ...+.+.+++. ++-..++....
T Consensus 137 ~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~---- 212 (272)
T 1d2n_A 137 LDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG---- 212 (272)
T ss_dssp TTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT----
T ss_pred hccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC----
Confidence 1 11112223332221 22233467778776554431 11 24577888887 55555554421
Q ss_pred CCCCCccHHHHHHHHHHHcCCC
Q 038448 293 DFSTHPSLKEIGEKIVKKCNGL 314 (385)
Q Consensus 293 ~~~~~~~l~~~~~~i~~~c~gl 314 (385)
. .. .+....|++.+.|.
T Consensus 213 ~--~~---~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 213 N--FK---DKERTTIAQQVKGK 229 (272)
T ss_dssp C--SC---HHHHHHHHHHHTTS
T ss_pred C--CC---HHHHHHHHHHhcCC
Confidence 1 11 34466788888773
No 33
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.95 E-value=0.0032 Score=60.60 Aligned_cols=157 Identities=16% Similarity=0.074 Sum_probs=76.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCC-CCHHHHHHHHHHHhhc---CCCCCccchHHhh--ch
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSED-FDIIRVTKSILKSIAS---DQLVDDHDLNLLQ--KY 232 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~il~~l~~---~~~~~~~~~~~l~--~~ 232 (385)
.+..+.|+|++|+||||||+.+.+. ....| +.++.. ..... ++.++..... ......--++++. ..
T Consensus 49 ~~~~vLL~GppGtGKTtlAr~ia~~--~~~~f-----~~l~a~~~~~~~-ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~ 120 (447)
T 3pvs_A 49 HLHSMILWGPPGTGKTTLAEVIARY--ANADV-----ERISAVTSGVKE-IREAIERARQNRNAGRRTILFVDEVHRFNK 120 (447)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHH--TTCEE-----EEEETTTCCHHH-HHHHHHHHHHHHHTTCCEEEEEETTTCC--
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHH--hCCCe-----EEEEeccCCHHH-HHHHHHHHHHhhhcCCCcEEEEeChhhhCH
Confidence 3467899999999999999999875 32222 333322 22222 2333322211 0100111122222 11
Q ss_pred hhHhhHhhhccCCCCCcEEEE-EcCChh--HH-hhcCCCCcccCCCCChhhHHhhhhccccCCCCC---CCCccHHHHHH
Q 038448 233 NDWTNRSRLFEAGAPGSKIVF-TTRNLG--VA-EKMGPLPAYPLKELSNDDCLSVFSPHSLGEKDF---STHPSLKEIGE 305 (385)
Q Consensus 233 ~~w~~l~~~l~~~~~gs~Iiv-TTR~~~--va-~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~---~~~~~l~~~~~ 305 (385)
...+.+...+.. ....+|. ||.+.. +. ........+.+.+++.++...++...+-..... ....--.+...
T Consensus 121 ~~q~~LL~~le~--~~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~ 198 (447)
T 3pvs_A 121 SQQDAFLPHIED--GTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRR 198 (447)
T ss_dssp ----CCHHHHHT--TSCEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHH
T ss_pred HHHHHHHHHHhc--CceEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHH
Confidence 223334444433 1223333 555432 11 111222468899999999888877654221000 01111245667
Q ss_pred HHHHHcCCChHHHHHHHHHh
Q 038448 306 KIVKKCNGLPLVAKSLGGLL 325 (385)
Q Consensus 306 ~i~~~c~glPLAi~~~~~~L 325 (385)
.|++.++|.+-.+..+...+
T Consensus 199 ~L~~~~~Gd~R~lln~Le~a 218 (447)
T 3pvs_A 199 AIAELVNGDARRALNTLEMM 218 (447)
T ss_dssp HHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHH
Confidence 78888999876665544443
No 34
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.92 E-value=0.003 Score=50.64 Aligned_cols=23 Identities=17% Similarity=0.082 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.-|.|+|.+|+|||++|+.+++.
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCEEEECCCCCCHHHHHHHHHHh
Confidence 34679999999999999999875
No 35
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.88 E-value=0.0075 Score=53.14 Aligned_cols=150 Identities=11% Similarity=0.014 Sum_probs=71.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCCC-----CHHHHHHHHHHHhhcCCCC--CccchHHhh-
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSEDF-----DIIRVTKSILKSIASDQLV--DDHDLNLLQ- 230 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-----~~~~~~~~il~~l~~~~~~--~~~~~~~l~- 230 (385)
..+-+.|+|++|+|||+||+.+++. .... .+.++.+.-. .....+..++......... ..++++.+.
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~ 112 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATE--AQVP---FLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGK 112 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH--HTCC---EEEEETTTTSSSSTTHHHHHHHHHHHHHHHTCSEEEEEECC-----
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH--hCCC---EEEechHHHHhhccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhc
Confidence 3456889999999999999999874 2222 2333333211 1123334444443322110 122222221
Q ss_pred -------------chhhHhhHhhhccC--CCCCcEEEEEcCChhHH-hh-cC---CCCcccCCCCChhhHHhhhhccccC
Q 038448 231 -------------KYNDWTNRSRLFEA--GAPGSKIVFTTRNLGVA-EK-MG---PLPAYPLKELSNDDCLSVFSPHSLG 290 (385)
Q Consensus 231 -------------~~~~w~~l~~~l~~--~~~gs~IivTTR~~~va-~~-~~---~~~~~~l~~L~~~~a~~Lf~~~a~~ 290 (385)
.......+...+.. ...+..||.||...... .. .. -...+.+..++.++-.+++...+..
T Consensus 113 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~ 192 (262)
T 2qz4_A 113 KRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKS 192 (262)
T ss_dssp --------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHH
T ss_pred cccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHh
Confidence 00111222222222 12345566677654321 11 11 1245678888888888887765422
Q ss_pred CCCCCCCccHHHHHHHHHHHcCCChH
Q 038448 291 EKDFSTHPSLKEIGEKIVKKCNGLPL 316 (385)
Q Consensus 291 ~~~~~~~~~l~~~~~~i~~~c~glPL 316 (385)
.. . ..........+++.+.|.+-
T Consensus 193 ~~-~--~~~~~~~~~~l~~~~~g~~~ 215 (262)
T 2qz4_A 193 LK-L--TQSSTFYSQRLAELTPGFSG 215 (262)
T ss_dssp TT-C--CBTHHHHHHHHHHTCTTCCH
T ss_pred CC-C--CcchhhHHHHHHHHCCCCCH
Confidence 11 1 11112234667777777643
No 36
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.80 E-value=0.0066 Score=55.99 Aligned_cols=52 Identities=15% Similarity=0.100 Sum_probs=35.4
Q ss_pred cccCCCCChhhHHhhhhccccCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHHHH
Q 038448 269 AYPLKELSNDDCLSVFSPHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVAKSLGGL 324 (385)
Q Consensus 269 ~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~c~glPLAi~~~~~~ 324 (385)
.+.+++.+.++-..++.+.+-... . .--.+.+..|++.+.|.|-.+..+...
T Consensus 174 ~~~Ld~~~~~~l~~iL~~~~~~~~-~---~~~~~~~~~ia~~~~G~~R~a~~ll~~ 225 (334)
T 1in4_A 174 ILELDFYTVKELKEIIKRAASLMD-V---EIEDAAAEMIAKRSRGTPRIAIRLTKR 225 (334)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHTT-C---CBCHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred eeeCCCCCHHHHHHHHHHHHHHcC-C---CcCHHHHHHHHHhcCCChHHHHHHHHH
Confidence 478999999999998887652111 1 112456888999999999755544433
No 37
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=96.79 E-value=0.0041 Score=56.63 Aligned_cols=127 Identities=9% Similarity=-0.092 Sum_probs=76.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccc-cccccccceEEEEecC-CCCHHHHHHHHHHHhhcCCCCC---ccchHHhh--ch
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSDV-RVHNHFDLKAWTCVSE-DFDIIRVTKSILKSIASDQLVD---DHDLNLLQ--KY 232 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~-~~~~~F~~~~wv~vs~-~~~~~~~~~~il~~l~~~~~~~---~~~~~~l~--~~ 232 (385)
...+.++|++|.||||+|..+.+.- .....+....++..+. ...+. ..++++..+....... .--+++.. ..
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id-~ir~li~~~~~~p~~~~~kvviIdead~lt~ 96 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGID-DIRTIKDFLNYSPELYTRKYVIVHDCERMTQ 96 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHH-HHHHHHHHHTSCCSSSSSEEEEETTGGGBCH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHH-HHHHHHHHHhhccccCCceEEEeccHHHhCH
Confidence 5789999999999999999987631 0111122345565543 33333 3455666664333211 11112222 34
Q ss_pred hhHhhHhhhccCCCCCcEEEEEcCCh-hHHhhcCCCCcccCCCCChhhHHhhhhccc
Q 038448 233 NDWTNRSRLFEAGAPGSKIVFTTRNL-GVAEKMGPLPAYPLKELSNDDCLSVFSPHS 288 (385)
Q Consensus 233 ~~w~~l~~~l~~~~~gs~IivTTR~~-~va~~~~~~~~~~l~~L~~~~a~~Lf~~~a 288 (385)
...+.+...+....+.+.+|++|.+. .+...+... .+++.+++.++....+....
T Consensus 97 ~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 97 QAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp HHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCCHHHHHHHHHHHh
Confidence 45566777776555677777766543 444444455 89999999999888776654
No 38
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.78 E-value=0.015 Score=53.20 Aligned_cols=151 Identities=12% Similarity=0.012 Sum_probs=76.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecC---CC--CHHHHHHHHHHHhhcCCCC--CccchHHhhc-
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSE---DF--DIIRVTKSILKSIASDQLV--DDHDLNLLQK- 231 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~---~~--~~~~~~~~il~~l~~~~~~--~~~~~~~l~~- 231 (385)
.+-|.++|++|+|||+||+.+++. ....| +.++.+. .+ .....++.++......... ..++++.+..
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~--~~~~~---~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~ 125 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATE--ANSTF---FSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGT 125 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHH--HTCEE---EEEEHHHHHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HCCCE---EEEchHHHhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhcc
Confidence 467899999999999999999874 22222 2233221 11 2334445555444332210 1223332221
Q ss_pred ---------hhhHhhHhhhcc---CCCCCcEEEEEcCChhH-----HhhcCCCCcccCCCCChhhHHhhhhccccCCCCC
Q 038448 232 ---------YNDWTNRSRLFE---AGAPGSKIVFTTRNLGV-----AEKMGPLPAYPLKELSNDDCLSVFSPHSLGEKDF 294 (385)
Q Consensus 232 ---------~~~w~~l~~~l~---~~~~gs~IivTTR~~~v-----a~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~ 294 (385)
......+...+. ....+..||.||..... ... -...+.+...+.++-..+|...+.... .
T Consensus 126 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~R--f~~~i~~~~p~~~~r~~il~~~~~~~~-~ 202 (322)
T 3eie_A 126 RGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRR--FERRIYIPLPDLAARTTMFEINVGDTP-C 202 (322)
T ss_dssp ------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHHH--CCEEEECCCCCHHHHHHHHHHHHTTCC-C
T ss_pred CCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHcc--cCeEEEeCCCCHHHHHHHHHHHhccCC-C
Confidence 111222322222 22345556667765322 222 224567788888888888877653211 1
Q ss_pred CCCccHHHHHHHHHHHcCCC-hHHHHHH
Q 038448 295 STHPSLKEIGEKIVKKCNGL-PLVAKSL 321 (385)
Q Consensus 295 ~~~~~l~~~~~~i~~~c~gl-PLAi~~~ 321 (385)
.. -......|++.+.|. +-.|..+
T Consensus 203 ~~---~~~~l~~la~~t~g~sg~di~~l 227 (322)
T 3eie_A 203 VL---TKEDYRTLGAMTEGYSGSDIAVV 227 (322)
T ss_dssp CC---CHHHHHHHHHTTTTCCHHHHHHH
T ss_pred CC---CHHHHHHHHHHcCCCCHHHHHHH
Confidence 11 123456788888774 4444443
No 39
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.76 E-value=0.0081 Score=55.93 Aligned_cols=50 Identities=10% Similarity=-0.050 Sum_probs=32.3
Q ss_pred CcccCCCCChhhHHhhhhccccCCCCCCCCccHHHHHHHHHHHcC-CChHHHHHH
Q 038448 268 PAYPLKELSNDDCLSVFSPHSLGEKDFSTHPSLKEIGEKIVKKCN-GLPLVAKSL 321 (385)
Q Consensus 268 ~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~c~-glPLAi~~~ 321 (385)
..+.+.+++.++...++...+-... .. --.+....|++.+. |.|-.+..+
T Consensus 252 ~~i~~~~~~~~e~~~il~~~~~~~~-~~---~~~~~l~~l~~~~~~G~~r~~~~l 302 (368)
T 3uk6_A 252 LIVSTTPYSEKDTKQILRIRCEEED-VE---MSEDAYTVLTRIGLETSLRYAIQL 302 (368)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHHTT-CC---BCHHHHHHHHHHHHHSCHHHHHHH
T ss_pred cEEEecCCCHHHHHHHHHHHHHHcC-CC---CCHHHHHHHHHHhcCCCHHHHHHH
Confidence 3478999999999998886643211 11 12456677888887 766554443
No 40
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.66 E-value=0.011 Score=54.42 Aligned_cols=150 Identities=11% Similarity=0.107 Sum_probs=75.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcccccccccc-ceEEEEecCCCCHHHHHHHHHHHhhcCC--C---CCccchHHhh--chhh
Q 038448 163 IPIIGTGRIGKTTLAQLAYSDVRVHNHFD-LKAWTCVSEDFDIIRVTKSILKSIASDQ--L---VDDHDLNLLQ--KYND 234 (385)
Q Consensus 163 i~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~il~~l~~~~--~---~~~~~~~~l~--~~~~ 234 (385)
+.++|++|+||||+|+.+..... ...+. ...-++.+....... .++++..+.... . ...--+++.. ..+.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~~~~~~~~~~~~~-ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~ 126 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIY-GKNYSNMVLELNASDDRGIDV-VRNQIKDFASTRQIFSKGFKLIILDEADAMTNAA 126 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH-TTSHHHHEEEECTTSCCSHHH-HHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHc-CCCccceEEEEcCcccccHHH-HHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHH
Confidence 88999999999999999877421 11111 122333333333333 233333332111 0 0111122221 2233
Q ss_pred HhhHhhhccCCCCCcEEEEEcCChh-HHhhc-CCCCcccCCCCChhhHHhhhhccccCCCCCCCCccHHHHHHHHHHHcC
Q 038448 235 WTNRSRLFEAGAPGSKIVFTTRNLG-VAEKM-GPLPAYPLKELSNDDCLSVFSPHSLGEKDFSTHPSLKEIGEKIVKKCN 312 (385)
Q Consensus 235 w~~l~~~l~~~~~gs~IivTTR~~~-va~~~-~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~c~ 312 (385)
.+.+...+......+.+|++|.... +...+ +....+.+.+++.++....+...+-.. ..... ......|+..++
T Consensus 127 ~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~~~~~-~~~i~---~~~~~~i~~~s~ 202 (340)
T 1sxj_C 127 QNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLVHE-KLKLS---PNAEKALIELSN 202 (340)
T ss_dssp HHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHTT-TCCBC---HHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEeccCCCHHHHHHHHHHHHHHc-CCCCC---HHHHHHHHHHcC
Confidence 4445444443345667777765432 11111 112357889999888877666543111 11111 345677888889
Q ss_pred CChHHH
Q 038448 313 GLPLVA 318 (385)
Q Consensus 313 glPLAi 318 (385)
|.+--+
T Consensus 203 G~~r~~ 208 (340)
T 1sxj_C 203 GDMRRV 208 (340)
T ss_dssp TCHHHH
T ss_pred CCHHHH
Confidence 887643
No 41
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.65 E-value=0.014 Score=53.43 Aligned_cols=153 Identities=12% Similarity=0.023 Sum_probs=75.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCCC-----CHHHHHHHHHHHhhcCCCC--CccchHHhh-
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSEDF-----DIIRVTKSILKSIASDQLV--DDHDLNLLQ- 230 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-----~~~~~~~~il~~l~~~~~~--~~~~~~~l~- 230 (385)
..+-|.++|++|+|||+||+.+++... ...| +.++.+.-. .....++.++......... ..++++.+.
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~~-~~~~---~~i~~~~l~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~ 119 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEAN-NSTF---FSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCG 119 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTT-SCEE---EEEECCSSCCSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGC
T ss_pred CCceEEEECCCCccHHHHHHHHHHHcC-CCcE---EEEEhHHHHhhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhcc
Confidence 346788999999999999999987420 1112 223322211 2344555555544322210 122233321
Q ss_pred -----ch----hhHhhHhhhccC---CCCCcEEEEEcCChh-----HHhhcCCCCcccCCCCChhhHHhhhhccccCCCC
Q 038448 231 -----KY----NDWTNRSRLFEA---GAPGSKIVFTTRNLG-----VAEKMGPLPAYPLKELSNDDCLSVFSPHSLGEKD 293 (385)
Q Consensus 231 -----~~----~~w~~l~~~l~~---~~~gs~IivTTR~~~-----va~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~ 293 (385)
.. .....+...+.. ...+..||.||.... +.+ .....+.+...+.++-..+|....-. ..
T Consensus 120 ~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~-~~ 196 (322)
T 1xwi_A 120 SRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGT-TQ 196 (322)
T ss_dssp CSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTT-CC
T ss_pred ccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhc-CC
Confidence 00 111222222221 123444555665432 222 22245678888888888887765421 11
Q ss_pred CCCCccHHHHHHHHHHHcCCC-hHHHHHH
Q 038448 294 FSTHPSLKEIGEKIVKKCNGL-PLVAKSL 321 (385)
Q Consensus 294 ~~~~~~l~~~~~~i~~~c~gl-PLAi~~~ 321 (385)
... -......|++.+.|. +-.|..+
T Consensus 197 ~~l---~~~~l~~la~~t~G~sgadl~~l 222 (322)
T 1xwi_A 197 NSL---TEADFRELGRKTDGYSGADISII 222 (322)
T ss_dssp BCC---CHHHHHHHHHTCTTCCHHHHHHH
T ss_pred CCC---CHHHHHHHHHHcCCCCHHHHHHH
Confidence 111 134567788888886 4334443
No 42
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.62 E-value=0.02 Score=53.28 Aligned_cols=156 Identities=12% Similarity=-0.015 Sum_probs=78.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCCCC-----HHHHHHHHHHHhhcCCC--CCccchHHhh-
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSEDFD-----IIRVTKSILKSIASDQL--VDDHDLNLLQ- 230 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~-----~~~~~~~il~~l~~~~~--~~~~~~~~l~- 230 (385)
..+.|.|+|++|+|||+||+.+++. .... .+.++.+.-.. .....+.++........ ...++++.+.
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~--~~~~---~~~i~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~ 190 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQ--SGAT---FFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLS 190 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHH--TTCE---EEEEEGGGGCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTB
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH--cCCe---EEEEehHHhhccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhc
Confidence 3567899999999999999999874 2222 23444333211 23444444444332221 0223333331
Q ss_pred ---------chhhHhhHhhhccC----CCCCcEEEEEcCChh-HHhhc--CCCCcccCCCCChhhHHhhhhccccCCCCC
Q 038448 231 ---------KYNDWTNRSRLFEA----GAPGSKIVFTTRNLG-VAEKM--GPLPAYPLKELSNDDCLSVFSPHSLGEKDF 294 (385)
Q Consensus 231 ---------~~~~w~~l~~~l~~----~~~gs~IivTTR~~~-va~~~--~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~ 294 (385)
.......+...+.. ...+..||.||.... +...+ .....+.+...+.++...++...+-... .
T Consensus 191 ~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~-~ 269 (357)
T 3d8b_A 191 QRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQ-C 269 (357)
T ss_dssp C------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSC-B
T ss_pred cCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcC-C
Confidence 11112233333321 122344555665432 11111 1123567888888887777765542111 1
Q ss_pred CCCccHHHHHHHHHHHcCC-ChHHHHHHHH
Q 038448 295 STHPSLKEIGEKIVKKCNG-LPLVAKSLGG 323 (385)
Q Consensus 295 ~~~~~l~~~~~~i~~~c~g-lPLAi~~~~~ 323 (385)
.. .......|++.+.| .|-.+..+..
T Consensus 270 ~l---~~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 270 CL---SEEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp CC---CHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred Cc---cHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 11 13456778888888 5555655544
No 43
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.61 E-value=0.0017 Score=53.83 Aligned_cols=39 Identities=21% Similarity=0.282 Sum_probs=27.7
Q ss_pred hhhHHHHHHHHhcCCCCCCCCceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 139 DKEKEETVKLLLRDDLRTDDGLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 139 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
+.+.+.+.+.+.. .....+.|+|++|+|||+||+.+.+.
T Consensus 28 ~~~~~~l~~~l~~------~~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 28 DTEIRRAIQILSR------RTKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp HHHHHHHHHHHTS------SSSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhC------CCCCceEEECCCCCCHHHHHHHHHHH
Confidence 3344555566533 23356789999999999999998774
No 44
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.54 E-value=0.0032 Score=53.31 Aligned_cols=36 Identities=17% Similarity=0.084 Sum_probs=27.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEe
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCV 198 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v 198 (385)
..+.|+|++|+|||+||+.+++. .......++|++.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~--~~~~~~~~~~~~~ 90 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE--LAKRNVSSLIVYV 90 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH--HHTTTCCEEEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEh
Confidence 67889999999999999999985 3333344566654
No 45
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.52 E-value=0.016 Score=54.50 Aligned_cols=147 Identities=14% Similarity=0.095 Sum_probs=74.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCCC-----CHHHHHHHHHHHhhcCCCC--CccchHHhh-
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSEDF-----DIIRVTKSILKSIASDQLV--DDHDLNLLQ- 230 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-----~~~~~~~~il~~l~~~~~~--~~~~~~~l~- 230 (385)
.++=|.++|++|.|||.||+++.+. ....| +.++.+.-. .....++.++.......+. ..+.++.+-
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e--~~~~f---~~v~~s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~ 255 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHH--TDCKF---IRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGS 255 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHH--HTCEE---EEEEGGGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTT
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHh--hCCCc---eEEEhHHhhccccchHHHHHHHHHHHHHHhCCceEeeecchhhcc
Confidence 3466889999999999999999985 33333 334433321 1344555555554333221 111111111
Q ss_pred --------ch----hhHhhHhhhccC--CCCCcEEEEEcCChhHH-----hhcCCCCcccCCCCChhhHHhhhhccccCC
Q 038448 231 --------KY----NDWTNRSRLFEA--GAPGSKIVFTTRNLGVA-----EKMGPLPAYPLKELSNDDCLSVFSPHSLGE 291 (385)
Q Consensus 231 --------~~----~~w~~l~~~l~~--~~~gs~IivTTR~~~va-----~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~ 291 (385)
.. .....+...+.. ...+-.||.||...+.. +.-.-...+.+...+.++-.++|..+.- .
T Consensus 256 ~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~-~ 334 (405)
T 4b4t_J 256 TRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSR-K 334 (405)
T ss_dssp SCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHT-T
T ss_pred CCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhc-C
Confidence 00 111222222222 23344566677654332 1112335678888888887888865532 1
Q ss_pred CCCCCCccHHHHHHHHHHHcCCCh
Q 038448 292 KDFSTHPSLKEIGEKIVKKCNGLP 315 (385)
Q Consensus 292 ~~~~~~~~l~~~~~~i~~~c~glP 315 (385)
......-+ ...|++.+.|+-
T Consensus 335 ~~l~~dvd----l~~lA~~t~G~S 354 (405)
T 4b4t_J 335 MNLTRGIN----LRKVAEKMNGCS 354 (405)
T ss_dssp SBCCSSCC----HHHHHHHCCSCC
T ss_pred CCCCccCC----HHHHHHHCCCCC
Confidence 11111123 345677787753
No 46
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.48 E-value=0.022 Score=52.06 Aligned_cols=147 Identities=15% Similarity=0.114 Sum_probs=74.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCCCCHHHHHHHHHHHhhcCCC----C---CccchHHhhch
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSEDFDIIRVTKSILKSIASDQL----V---DDHDLNLLQKY 232 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~----~---~~~~~~~l~~~ 232 (385)
..++.+.|++|+|||++|+.+.+. .. ...+.++.+. .. ...+..++........ . ..++.+.+...
T Consensus 48 ~~~~L~~G~~G~GKT~la~~la~~--l~---~~~~~i~~~~-~~-~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~ 120 (324)
T 3u61_B 48 PHIILHSPSPGTGKTTVAKALCHD--VN---ADMMFVNGSD-CK-IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLA 120 (324)
T ss_dssp CSEEEECSSTTSSHHHHHHHHHHH--TT---EEEEEEETTT-CC-HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGH
T ss_pred CeEEEeeCcCCCCHHHHHHHHHHH--hC---CCEEEEcccc-cC-HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCcH
Confidence 367788888999999999999875 22 1234455443 23 3333443333222111 0 01112222112
Q ss_pred hhHhhHhhhccCCCCCcEEEEEcCChh-----HHhhcCCCCcccCCCCChhhHHhh-------hhccccCCCCCCCCccH
Q 038448 233 NDWTNRSRLFEAGAPGSKIVFTTRNLG-----VAEKMGPLPAYPLKELSNDDCLSV-------FSPHSLGEKDFSTHPSL 300 (385)
Q Consensus 233 ~~w~~l~~~l~~~~~gs~IivTTR~~~-----va~~~~~~~~~~l~~L~~~~a~~L-------f~~~a~~~~~~~~~~~l 300 (385)
+..+.+...+.....+.++|+||.... +...+ ..+.+.+++.++-..+ +...+.. .....++
T Consensus 121 ~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~---~~i~~~~~~~~e~~~il~~~~~~l~~~~~~-~~~~~~~-- 194 (324)
T 3u61_B 121 ESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRC---RVITFGQPTDEDKIEMMKQMIRRLTEICKH-EGIAIAD-- 194 (324)
T ss_dssp HHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHS---EEEECCCCCHHHHHHHHHHHHHHHHHHHHH-HTCCBSC--
T ss_pred HHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhC---cEEEeCCCCHHHHHHHHHHHHHHHHHHHHH-cCCCCCc--
Confidence 333444444433334567888887543 22222 3688889998774222 2222111 1111111
Q ss_pred HHHHHHHHHHcCCChHHHH
Q 038448 301 KEIGEKIVKKCNGLPLVAK 319 (385)
Q Consensus 301 ~~~~~~i~~~c~glPLAi~ 319 (385)
.+....|++.++|.+-.+.
T Consensus 195 ~~~~~~l~~~~~gd~R~a~ 213 (324)
T 3u61_B 195 MKVVAALVKKNFPDFRKTI 213 (324)
T ss_dssp HHHHHHHHHHTCSCTTHHH
T ss_pred HHHHHHHHHhCCCCHHHHH
Confidence 2566778888988765433
No 47
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.43 E-value=0.012 Score=54.85 Aligned_cols=151 Identities=12% Similarity=0.020 Sum_probs=73.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecC---CC--CHHHHHHHHHHHhhcCCC--CCccchHHhhc-
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSE---DF--DIIRVTKSILKSIASDQL--VDDHDLNLLQK- 231 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~---~~--~~~~~~~~il~~l~~~~~--~~~~~~~~l~~- 231 (385)
.+-|.|+|++|+|||+||+.+++. ....| +.++.+. .+ .....++.++........ ...++++.+..
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~--~~~~~---~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~ 158 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATE--ANSTF---FSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGT 158 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHH--HTCEE---EEEEHHHHHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC-
T ss_pred CceEEEECCCCCcHHHHHHHHHHH--hCCCE---EEeeHHHHhhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccc
Confidence 355889999999999999999885 22222 2232211 10 123344444444322111 01223332221
Q ss_pred ---------hhhHhhHhhhcc---CCCCCcEEEEEcCChh-----HHhhcCCCCcccCCCCChhhHHhhhhccccCCCCC
Q 038448 232 ---------YNDWTNRSRLFE---AGAPGSKIVFTTRNLG-----VAEKMGPLPAYPLKELSNDDCLSVFSPHSLGEKDF 294 (385)
Q Consensus 232 ---------~~~w~~l~~~l~---~~~~gs~IivTTR~~~-----va~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~ 294 (385)
......+...+. ....+..||.||.... +.. .....+.+...+.++-..+|...+... ..
T Consensus 159 r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~-~~ 235 (355)
T 2qp9_X 159 RGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDT-PS 235 (355)
T ss_dssp -----CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTS-CB
T ss_pred CCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhC-CC
Confidence 001122222222 1233455666665442 222 222456788888888888887654221 11
Q ss_pred CCCccHHHHHHHHHHHcCCC-hHHHHHH
Q 038448 295 STHPSLKEIGEKIVKKCNGL-PLVAKSL 321 (385)
Q Consensus 295 ~~~~~l~~~~~~i~~~c~gl-PLAi~~~ 321 (385)
... ......|++.+.|. |-.|..+
T Consensus 236 ~~~---~~~l~~la~~t~G~sg~dl~~l 260 (355)
T 2qp9_X 236 VLT---KEDYRTLGAMTEGYSGSDIAVV 260 (355)
T ss_dssp CCC---HHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCC---HHHHHHHHHHcCCCCHHHHHHH
Confidence 111 33456788888884 4334443
No 48
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.36 E-value=0.0048 Score=52.40 Aligned_cols=37 Identities=35% Similarity=0.318 Sum_probs=27.3
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 038448 143 EETVKLLLRDDLRTDDGLSVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 143 ~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
+.+.+.+.... .....+|+|+|.+|+|||||++.+..
T Consensus 8 ~~l~~~~~~~~---~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 8 DFLCKTILAIK---TAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHTSC---CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHhc---cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44555555432 23457999999999999999998875
No 49
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.32 E-value=0.002 Score=52.96 Aligned_cols=20 Identities=40% Similarity=0.502 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCcHHHHHHHH
Q 038448 161 SVIPIIGTGRIGKTTLAQLA 180 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v 180 (385)
.+|.|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47999999999999999999
No 50
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.28 E-value=0.0034 Score=52.20 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
-..+.|+|++|+|||||++.+++.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 368899999999999999999875
No 51
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.27 E-value=0.0036 Score=53.43 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.-.+|+|+|..|.|||||++.+..-
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999988763
No 52
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.19 E-value=0.012 Score=55.93 Aligned_cols=25 Identities=20% Similarity=0.194 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.++=|.++|++|.|||+||+++.+.
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4567899999999999999999985
No 53
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.17 E-value=0.0058 Score=55.08 Aligned_cols=27 Identities=19% Similarity=0.274 Sum_probs=23.0
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 157 DDGLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 157 ~~~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.....+|.|.|++|+||||+|+.+...
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 345688999999999999999999763
No 54
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.13 E-value=0.0028 Score=52.03 Aligned_cols=23 Identities=22% Similarity=0.174 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+|.|.|++|+||||+|+.+...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998763
No 55
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.12 E-value=0.0028 Score=52.47 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+|.|+|++|+||||+|+.+...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999874
No 56
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.11 E-value=0.0052 Score=54.24 Aligned_cols=28 Identities=21% Similarity=0.293 Sum_probs=23.6
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 156 TDDGLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 156 ~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
......+|.|+|++|+||||+|+.+...
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3345689999999999999999998763
No 57
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.11 E-value=0.0032 Score=52.74 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
-.+++|+|++|+|||||++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 368999999999999999999874
No 58
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.09 E-value=0.0032 Score=52.10 Aligned_cols=22 Identities=32% Similarity=0.339 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999976
No 59
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.09 E-value=0.0028 Score=50.71 Aligned_cols=22 Identities=14% Similarity=0.077 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 038448 162 VIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
-|.|+|.+|+|||++|+.+++.
T Consensus 29 ~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 29 PVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp CEEEEEETTCCHHHHHGGGCCT
T ss_pred cEEEECCCCccHHHHHHHHHHh
Confidence 4779999999999999999874
No 60
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.07 E-value=0.027 Score=53.71 Aligned_cols=147 Identities=14% Similarity=0.169 Sum_probs=73.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCCC-----CHHHHHHHHHHHhhcCCCC--CccchHHhh-
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSEDF-----DIIRVTKSILKSIASDQLV--DDHDLNLLQ- 230 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-----~~~~~~~~il~~l~~~~~~--~~~~~~~l~- 230 (385)
.++=|.++|++|.|||+||+++.+. ....| +.++.+.-. .....++.+........+. ..+.++.+-
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e--~~~~~---~~v~~s~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~ 288 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAAT--IGANF---IFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGG 288 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH--HTCEE---EEEEGGGTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSC
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEehhhhccccchHHHHHHHHHHHHHHhcCCceeeeeccccccc
Confidence 4577899999999999999999985 33222 334433321 1234455555544332221 011111111
Q ss_pred --------c----hhhHhhHhhhccC--CCCCcEEEEEcCChhHHhh--cCC---CCcccCCCCChhhHHhhhhccccCC
Q 038448 231 --------K----YNDWTNRSRLFEA--GAPGSKIVFTTRNLGVAEK--MGP---LPAYPLKELSNDDCLSVFSPHSLGE 291 (385)
Q Consensus 231 --------~----~~~w~~l~~~l~~--~~~gs~IivTTR~~~va~~--~~~---~~~~~l~~L~~~~a~~Lf~~~a~~~ 291 (385)
. ......+...+.. ...+..||.||........ ..+ ...+.+...+.++-..+|..+.-.
T Consensus 289 ~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~- 367 (437)
T 4b4t_L 289 RRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAK- 367 (437)
T ss_dssp CCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHT-
T ss_pred ccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcC-
Confidence 0 0112223333322 2334567778875543321 112 235677777777777777654321
Q ss_pred CCCCCCccHHHHHHHHHHHcCCCh
Q 038448 292 KDFSTHPSLKEIGEKIVKKCNGLP 315 (385)
Q Consensus 292 ~~~~~~~~l~~~~~~i~~~c~glP 315 (385)
......-++ ..|++.+.|+-
T Consensus 368 ~~~~~d~dl----~~lA~~t~G~s 387 (437)
T 4b4t_L 368 VKKTGEFDF----EAAVKMSDGFN 387 (437)
T ss_dssp SCBCSCCCH----HHHHHTCCSCC
T ss_pred CCCCcccCH----HHHHHhCCCCC
Confidence 111111233 45667777753
No 61
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.03 E-value=0.048 Score=52.27 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
..+-|.|+|++|+|||+||+.+++.
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3467899999999999999999875
No 62
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.98 E-value=0.0038 Score=52.01 Aligned_cols=23 Identities=9% Similarity=0.368 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
++++|+|++|+|||||++.+...
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 68999999999999999998763
No 63
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.98 E-value=0.0035 Score=53.09 Aligned_cols=24 Identities=29% Similarity=0.238 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
-.+|.|+|++|+||||+++.+...
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 368999999999999999999863
No 64
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.95 E-value=0.0032 Score=51.83 Aligned_cols=23 Identities=22% Similarity=0.289 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+|+|+|++|+|||||++.+...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999763
No 65
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.94 E-value=0.006 Score=55.07 Aligned_cols=26 Identities=19% Similarity=0.133 Sum_probs=22.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 158 DGLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
....+|+|+|..|+||||||+.+...
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45689999999999999999887653
No 66
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.92 E-value=0.0038 Score=52.39 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
+.|.|+|++|+|||||++.+...
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 45789999999999999998764
No 67
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.84 E-value=0.0045 Score=51.58 Aligned_cols=24 Identities=29% Similarity=0.257 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+.|.|+|++|+||||+|+.+...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 357889999999999999999763
No 68
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.84 E-value=0.035 Score=52.16 Aligned_cols=155 Identities=12% Similarity=0.036 Sum_probs=74.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCCC-----CHHHHHHHHHHHhhcCCCC--CccchHHhh--
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSEDF-----DIIRVTKSILKSIASDQLV--DDHDLNLLQ-- 230 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-----~~~~~~~~il~~l~~~~~~--~~~~~~~l~-- 230 (385)
.+-|.|+|.+|+|||+||+.+.+. ....| +.++.+.-. .....+..++......... ..++++.+.
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~--~~~~~---~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~ 222 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAE--SNATF---FNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCE 222 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHH--TTCEE---EEECSCCC-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--
T ss_pred CceEEEECCCCCCHHHHHHHHHHh--hcCcE---EEeeHHHhhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhccc
Confidence 467899999999999999999874 22222 223322211 1223344444443332210 122333221
Q ss_pred --------chhhHhhHhhhcc---C-CCCCcEEEEEcCChhHH-hh-cC-CCCcccCCCCChhhHHhhhhccccCCCCCC
Q 038448 231 --------KYNDWTNRSRLFE---A-GAPGSKIVFTTRNLGVA-EK-MG-PLPAYPLKELSNDDCLSVFSPHSLGEKDFS 295 (385)
Q Consensus 231 --------~~~~w~~l~~~l~---~-~~~gs~IivTTR~~~va-~~-~~-~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~ 295 (385)
.......+...+. . ......||.||...... .. .. ....+.+...+.++-..++...+-....
T Consensus 223 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~-- 300 (389)
T 3vfd_A 223 RREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGS-- 300 (389)
T ss_dssp ------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCC--
T ss_pred CCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCC--
Confidence 0111112222221 1 12234455566543211 11 11 1235778888888888888765422111
Q ss_pred CCccHHHHHHHHHHHcCCChH-HHHHHHH
Q 038448 296 THPSLKEIGEKIVKKCNGLPL-VAKSLGG 323 (385)
Q Consensus 296 ~~~~l~~~~~~i~~~c~glPL-Ai~~~~~ 323 (385)
.-.......|++.+.|..- ++..+..
T Consensus 301 --~l~~~~~~~la~~~~g~~~~~l~~L~~ 327 (389)
T 3vfd_A 301 --PLTQKELAQLARMTDGYSGSDLTALAK 327 (389)
T ss_dssp --CSCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred --CCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 1113456788888988544 5555443
No 69
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.81 E-value=0.0054 Score=51.34 Aligned_cols=25 Identities=32% Similarity=0.355 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
...+|.|.|++|+||||+|+.+...
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3478999999999999999998763
No 70
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.81 E-value=0.0048 Score=51.56 Aligned_cols=23 Identities=17% Similarity=0.170 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+|.|.|++|+||||+|+.+...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999774
No 71
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.78 E-value=0.0041 Score=52.71 Aligned_cols=24 Identities=17% Similarity=0.302 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
..+|.|.|++|+||||+|+.+...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998764
No 72
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.78 E-value=0.0063 Score=51.54 Aligned_cols=25 Identities=32% Similarity=0.183 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.-.+|.|+|++|.|||||++.+...
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3479999999999999999998764
No 73
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.74 E-value=0.0053 Score=51.96 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+++|+|+.|+|||||++.+...
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 58999999999999999998763
No 74
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.74 E-value=0.0052 Score=50.71 Aligned_cols=23 Identities=35% Similarity=0.635 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
-.+++|+|++|+|||||++.++.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 36899999999999999998654
No 75
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.70 E-value=0.0077 Score=49.61 Aligned_cols=23 Identities=17% Similarity=0.280 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
-.+|+|+|++|+||||+++.+..
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 76
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.69 E-value=0.026 Score=53.95 Aligned_cols=147 Identities=13% Similarity=0.101 Sum_probs=73.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCC---C--CHHHHHHHHHHHhhcCCCC--CccchHHhh-
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSED---F--DIIRVTKSILKSIASDQLV--DDHDLNLLQ- 230 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~---~--~~~~~~~~il~~l~~~~~~--~~~~~~~l~- 230 (385)
.++=|.++|++|.|||+||+++.+. ....| +.++.+.- + .....++.++.......+. ..+.++.+-
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e--~~~~f---i~vs~s~L~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~ 316 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANR--TDATF---IRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGG 316 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHH--HTCEE---EEEEGGGGCCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSB
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhc--cCCCe---EEEEhHHhhcccCCHHHHHHHHHHHHHHhcCCceEeecccccccc
Confidence 4577889999999999999999985 33333 33443221 1 1344555555544333221 111111111
Q ss_pred ------------chhhHhhHhhhccC--CCCCcEEEEEcCChhHHh--hc---CCCCcccCCCCChhhHHhhhhccccCC
Q 038448 231 ------------KYNDWTNRSRLFEA--GAPGSKIVFTTRNLGVAE--KM---GPLPAYPLKELSNDDCLSVFSPHSLGE 291 (385)
Q Consensus 231 ------------~~~~w~~l~~~l~~--~~~gs~IivTTR~~~va~--~~---~~~~~~~l~~L~~~~a~~Lf~~~a~~~ 291 (385)
.......+...+.. ...+--||.||....... .. .-...+.+...+.++-.++|..+.- .
T Consensus 317 ~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~-~ 395 (467)
T 4b4t_H 317 ARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSK-S 395 (467)
T ss_dssp CCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHT-T
T ss_pred cccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhc-C
Confidence 00111122222222 123334566775443321 11 1235677888888887888865542 1
Q ss_pred CCCCCCccHHHHHHHHHHHcCCCh
Q 038448 292 KDFSTHPSLKEIGEKIVKKCNGLP 315 (385)
Q Consensus 292 ~~~~~~~~l~~~~~~i~~~c~glP 315 (385)
......-++ ..|++.|.|+-
T Consensus 396 ~~l~~dvdl----~~LA~~T~GfS 415 (467)
T 4b4t_H 396 MSVERGIRW----ELISRLCPNST 415 (467)
T ss_dssp SCBCSSCCH----HHHHHHCCSCC
T ss_pred CCCCCCCCH----HHHHHHCCCCC
Confidence 111111233 45677887753
No 77
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.68 E-value=0.013 Score=50.10 Aligned_cols=44 Identities=23% Similarity=0.083 Sum_probs=32.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCCCCHHHHH
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSEDFDIIRVT 208 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 208 (385)
-.++.|+|.+|+|||||+..+.. ..-..++|++....++...+.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i~~~~~~~~~~~~ 63 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVDTEGGFSPERLV 63 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEEESSCCCCHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEEECCCCCCHHHHH
Confidence 36899999999999999999876 112357788776655554443
No 78
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.68 E-value=0.0056 Score=51.10 Aligned_cols=23 Identities=35% Similarity=0.533 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+|.|.|++|+||||+++.+...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999998763
No 79
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.67 E-value=0.0064 Score=51.49 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.-.+|+|+|++|+|||||++.+...
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHh
Confidence 3478999999999999999999763
No 80
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.64 E-value=0.0069 Score=51.12 Aligned_cols=25 Identities=36% Similarity=0.331 Sum_probs=22.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhc
Q 038448 158 DGLSVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
....+|+|+|+.|+||||+++.+..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999999976
No 81
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.64 E-value=0.0076 Score=50.99 Aligned_cols=26 Identities=35% Similarity=0.405 Sum_probs=22.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 158 DGLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
....+|.|.|++|+||||+|+.+...
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45679999999999999999999763
No 82
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.63 E-value=0.0067 Score=50.73 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
.+++|+|++|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999975
No 83
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.63 E-value=0.0071 Score=54.68 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=22.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 158 DGLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
..++.+.++|++|+|||+||+.+++.
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45578889999999999999999985
No 84
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.62 E-value=0.0057 Score=50.75 Aligned_cols=25 Identities=40% Similarity=0.383 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
..++|.|+|++|+||||+++.+...
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 3467889999999999999998764
No 85
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.61 E-value=0.0056 Score=51.25 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
++++|+|+.|+|||||++.+...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 57899999999999999999863
No 86
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.61 E-value=0.0073 Score=51.53 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
-.+|+|+|++|+|||||++.+...
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 468999999999999999999864
No 87
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.61 E-value=0.0073 Score=51.48 Aligned_cols=24 Identities=46% Similarity=0.333 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
...+|+|+|..|+|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 447899999999999999998876
No 88
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.58 E-value=0.0068 Score=50.68 Aligned_cols=23 Identities=22% Similarity=0.221 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+|.|.|++|+||||+|+.+...
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999988753
No 89
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.57 E-value=0.0083 Score=51.00 Aligned_cols=25 Identities=36% Similarity=0.319 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
...+|+|+|++|+||||+++.+...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4579999999999999999999763
No 90
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.56 E-value=0.0067 Score=49.68 Aligned_cols=26 Identities=27% Similarity=0.225 Sum_probs=21.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 158 DGLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
....+|.|.|++|+||||+|+.+...
T Consensus 5 ~~~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 5 HHMQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp ---CEEEEESCTTSSHHHHHHHHHHH
T ss_pred cccceEEEECCCCCCHHHHHHHHHHH
Confidence 35689999999999999999998763
No 91
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.56 E-value=0.0065 Score=51.27 Aligned_cols=22 Identities=32% Similarity=0.368 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 038448 162 VIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.|+|.|++|+||||+++.+...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999999764
No 92
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.55 E-value=0.0049 Score=49.70 Aligned_cols=38 Identities=18% Similarity=0.096 Sum_probs=27.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecC
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSE 200 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~ 200 (385)
..+.|+|..|+|||||++.+++.... ..+ ..++++...
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~-~~~~~~~~~ 74 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALE-AGK-NAAYIDAAS 74 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHT-TTC-CEEEEETTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHh-cCC-cEEEEcHHH
Confidence 57899999999999999999875321 111 256666543
No 93
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.55 E-value=0.03 Score=51.13 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=22.8
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhc
Q 038448 157 DDGLSVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 157 ~~~~~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
...+.+|+|.|..|+|||||++.+..
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 35678999999999999999988865
No 94
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.53 E-value=0.0058 Score=51.96 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
...+|.|+|++|+|||||++.+...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999764
No 95
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.52 E-value=0.024 Score=49.18 Aligned_cols=48 Identities=17% Similarity=0.130 Sum_probs=33.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccc----cccceEEEEecCCCCHHHH
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSDVRVHN----HFDLKAWTCVSEDFDIIRV 207 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~ 207 (385)
-.++.|+|.+|+|||||+..+........ .-..++|++....++...+
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~ 75 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL 75 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHH
Confidence 36899999999999999998876321211 1246788887665554443
No 96
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.52 E-value=0.0077 Score=50.51 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
..+|.|.|++|+||||+|+.+...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999763
No 97
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.51 E-value=0.006 Score=50.36 Aligned_cols=23 Identities=39% Similarity=0.365 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
+.|.|.|++|+||||+|+.+...
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 36899999999999999999763
No 98
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.51 E-value=0.0075 Score=50.19 Aligned_cols=22 Identities=36% Similarity=0.401 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 038448 162 VIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.++|+|+.|+|||||++.+...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999888754
No 99
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.51 E-value=0.0084 Score=50.73 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+|+|+|++|+|||||++.+...
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 68999999999999999998764
No 100
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.50 E-value=0.009 Score=49.85 Aligned_cols=24 Identities=33% Similarity=0.322 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
....|.|+|++|+||||+++.+..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999876
No 101
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.50 E-value=0.0071 Score=53.43 Aligned_cols=23 Identities=26% Similarity=0.205 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+|.|+|++|+||||||+.+...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhc
Confidence 47899999999999999999764
No 102
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.48 E-value=0.0071 Score=51.24 Aligned_cols=22 Identities=32% Similarity=0.347 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999876
No 103
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.43 E-value=0.0063 Score=50.63 Aligned_cols=23 Identities=17% Similarity=0.229 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+|.|+|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998763
No 104
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.43 E-value=0.0088 Score=49.25 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
..+++.|+|..|+|||||+..+...
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4579999999999999999998764
No 105
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.43 E-value=0.0075 Score=51.98 Aligned_cols=22 Identities=36% Similarity=0.406 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
.+|+|+|++|+||||+++.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999875
No 106
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.43 E-value=0.007 Score=51.26 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
++++|+|+.|+|||||++.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999998875
No 107
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.42 E-value=0.0096 Score=50.33 Aligned_cols=26 Identities=19% Similarity=0.138 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 158 DGLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
....+|.|.|++|+||||+|+.+...
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34468999999999999999998763
No 108
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.42 E-value=0.0089 Score=50.73 Aligned_cols=22 Identities=32% Similarity=0.366 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999965
No 109
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.41 E-value=0.0087 Score=52.48 Aligned_cols=23 Identities=30% Similarity=0.257 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
..+|+|+|++|+|||||++.+..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 47999999999999999999984
No 110
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.38 E-value=0.0088 Score=53.02 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
..+|.|.|++|+||||+|+.+...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999998763
No 111
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.37 E-value=0.011 Score=49.27 Aligned_cols=24 Identities=25% Similarity=0.249 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
..+|.|.|++|+||||+|+.+...
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998763
No 112
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.37 E-value=0.0088 Score=49.74 Aligned_cols=22 Identities=23% Similarity=0.224 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
.+|.+.|++|+||||+++.+..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999975
No 113
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.34 E-value=0.0074 Score=49.51 Aligned_cols=23 Identities=22% Similarity=0.228 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+|.|.|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998763
No 114
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.34 E-value=0.0085 Score=50.36 Aligned_cols=23 Identities=30% Similarity=0.300 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+|.|.|++|+||||+|+.+...
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999763
No 115
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.32 E-value=0.01 Score=51.06 Aligned_cols=26 Identities=23% Similarity=0.210 Sum_probs=23.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 158 DGLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
...++|.|.|++|+||||.|+.+...
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999764
No 116
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.31 E-value=0.012 Score=49.09 Aligned_cols=25 Identities=28% Similarity=0.112 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
...+|.|.|++|+||||+++.+...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999998764
No 117
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.30 E-value=0.0093 Score=50.63 Aligned_cols=23 Identities=26% Similarity=0.238 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+|.|.|++|+||||+|+.+...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 68999999999999999999764
No 118
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.24 E-value=0.011 Score=52.16 Aligned_cols=25 Identities=16% Similarity=0.173 Sum_probs=21.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhc
Q 038448 158 DGLSVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
....+|+|.|++|+||||+|+.+..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999998866
No 119
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.22 E-value=0.023 Score=58.42 Aligned_cols=45 Identities=20% Similarity=0.244 Sum_probs=29.7
Q ss_pred hhhHHHHHHHHhcCC---CCCCCCceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 139 DKEKEETVKLLLRDD---LRTDDGLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 139 ~~~~~~l~~~L~~~~---~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
+..++.+.+.+.... .........+.++|++|+|||+||+.+.+.
T Consensus 497 ~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~ 544 (758)
T 3pxi_A 497 DEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES 544 (758)
T ss_dssp HHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 445555655554321 101223347999999999999999999874
No 120
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.22 E-value=0.01 Score=49.64 Aligned_cols=22 Identities=36% Similarity=0.406 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 038448 162 VIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
+|+|.|++|+||||+++.+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999773
No 121
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.20 E-value=0.011 Score=50.42 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+++|+|+.|+|||||++.+..-
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 68999999999999999998763
No 122
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.20 E-value=0.016 Score=50.68 Aligned_cols=25 Identities=16% Similarity=-0.004 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
...+|.|.|++|+||||+|+.+...
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999753
No 123
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.19 E-value=0.0074 Score=50.02 Aligned_cols=24 Identities=29% Similarity=0.206 Sum_probs=17.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
..+|.|.|++|+||||+|+.+...
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999998763
No 124
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.19 E-value=0.02 Score=52.18 Aligned_cols=51 Identities=20% Similarity=0.247 Sum_probs=33.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEe--cCC-----CCHHHHHHHHHHHhh
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCV--SED-----FDIIRVTKSILKSIA 216 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v--s~~-----~~~~~~~~~il~~l~ 216 (385)
+++.|+|++|+||||||.++... .-..++|++. .+. .+...++..+.+.+.
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~ 181 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAML 181 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHh
Confidence 56789999999999999998763 1223456766 211 345566655555554
No 125
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.18 E-value=0.01 Score=48.35 Aligned_cols=22 Identities=32% Similarity=0.306 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 038448 162 VIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.|.|.|++|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998763
No 126
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.16 E-value=0.013 Score=53.12 Aligned_cols=25 Identities=24% Similarity=0.215 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
...+++|+|++|+|||||+..+..-
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4579999999999999999988763
No 127
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.15 E-value=0.011 Score=49.88 Aligned_cols=25 Identities=20% Similarity=0.485 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.-++|+|+|+.|+|||||++.+...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 4478999999999999999998763
No 128
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.15 E-value=0.013 Score=53.54 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=22.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhc
Q 038448 158 DGLSVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
....+|+|+|..|+|||||++.+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 3557999999999999999998876
No 129
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=95.13 E-value=0.012 Score=53.66 Aligned_cols=25 Identities=32% Similarity=0.503 Sum_probs=20.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhc
Q 038448 158 DGLSVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
++.+||+|.|-|||||||.+..+.-
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~ 70 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSA 70 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHHHH
Confidence 4679999999999999998866543
No 130
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.12 E-value=0.012 Score=50.03 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
..+|.|.|++|+||||+++.+...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999764
No 131
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.12 E-value=0.012 Score=50.61 Aligned_cols=24 Identities=25% Similarity=0.151 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
...|.|.|++|+||||+|+.+...
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 367999999999999999999763
No 132
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.11 E-value=0.015 Score=49.87 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
...+|.|+|.+|+|||||+..+...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4588999999999999999998764
No 133
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.09 E-value=0.02 Score=50.13 Aligned_cols=22 Identities=18% Similarity=0.321 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
.+++|+|+.|.|||||.+.+..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 7999999999999999999986
No 134
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.08 E-value=0.01 Score=51.06 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
.+++|+|+.|+|||||++.+..
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 6899999999999999999876
No 135
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.08 E-value=0.035 Score=52.54 Aligned_cols=146 Identities=15% Similarity=0.177 Sum_probs=71.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCC---C--CHHHHHHHHHHHhhcCCCC--CccchHHhh-
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSED---F--DIIRVTKSILKSIASDQLV--DDHDLNLLQ- 230 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~---~--~~~~~~~~il~~l~~~~~~--~~~~~~~l~- 230 (385)
..+=|.++|++|.|||.||+++.+. ....| +.++.+.- + .....++.++.......+. ..++++.+-
T Consensus 215 ~prGvLLyGPPGTGKTlLAkAiA~e--~~~~f---i~v~~s~l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~ 289 (437)
T 4b4t_I 215 PPKGVILYGAPGTGKTLLAKAVANQ--TSATF---LRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGT 289 (437)
T ss_dssp CCSEEEEESSTTTTHHHHHHHHHHH--HTCEE---EEEESGGGCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSC
T ss_pred CCCCCceECCCCchHHHHHHHHHHH--hCCCE---EEEEHHHhhhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcc
Confidence 4577999999999999999999985 33333 23332221 1 2344555555544332210 011111111
Q ss_pred --------c----hhhHhhHhhhcc--CCCCCcEEEEEcCChhHHhh-c-CCC---CcccCCCCChhhHHhhhhccccCC
Q 038448 231 --------K----YNDWTNRSRLFE--AGAPGSKIVFTTRNLGVAEK-M-GPL---PAYPLKELSNDDCLSVFSPHSLGE 291 (385)
Q Consensus 231 --------~----~~~w~~l~~~l~--~~~~gs~IivTTR~~~va~~-~-~~~---~~~~l~~L~~~~a~~Lf~~~a~~~ 291 (385)
. ......+...+. ....+--||.||...+.... + .+. ..+.+...+.++-.++|..+. ..
T Consensus 290 ~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l-~~ 368 (437)
T 4b4t_I 290 KRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHT-SK 368 (437)
T ss_dssp CCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHH-TT
T ss_pred cCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHh-cC
Confidence 0 011122222222 12234456677765544321 1 111 346777777777777776553 21
Q ss_pred CCCCCCccHHHHHHHHHHHcCCC
Q 038448 292 KDFSTHPSLKEIGEKIVKKCNGL 314 (385)
Q Consensus 292 ~~~~~~~~l~~~~~~i~~~c~gl 314 (385)
......-++ ..|++.+.|+
T Consensus 369 ~~l~~dvdl----~~LA~~T~Gf 387 (437)
T 4b4t_I 369 MNLSEDVNL----ETLVTTKDDL 387 (437)
T ss_dssp SCBCSCCCH----HHHHHHCCSC
T ss_pred CCCCCcCCH----HHHHHhCCCC
Confidence 111112233 4566777765
No 136
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.06 E-value=0.018 Score=50.22 Aligned_cols=34 Identities=15% Similarity=0.280 Sum_probs=26.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccccceEEEE
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTC 197 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~ 197 (385)
.+++|+|+.|.|||||.+.+.. ........+++.
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~G---l~~p~~G~I~~~ 65 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGC---LDKPTEGEVYID 65 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT---SSCCSEEEEEET
T ss_pred CEEEEECCCCCcHHHHHHHHhc---CCCCCceEEEEC
Confidence 5899999999999999999986 333344555553
No 137
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.04 E-value=0.013 Score=49.84 Aligned_cols=25 Identities=28% Similarity=0.234 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
...+|.|.|++|+||||+++.+...
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999764
No 138
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.02 E-value=0.014 Score=52.31 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=21.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHh
Q 038448 158 DGLSVIPIIGTGRIGKTTLAQLAY 181 (385)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~ 181 (385)
....+|+|.|++|+||||+|+.+.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 356799999999999999999987
No 139
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.02 E-value=0.015 Score=50.92 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
.-.+|+|.|..|+|||||++.+..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999998865
No 140
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=95.02 E-value=0.017 Score=55.84 Aligned_cols=39 Identities=26% Similarity=0.333 Sum_probs=30.5
Q ss_pred hhhHHHHHHHHhcCCCCCCCCceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 139 DKEKEETVKLLLRDDLRTDDGLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 139 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
+.+.+.+++.|.... ..-+.++|.+|+|||++|+.+...
T Consensus 186 ~~~i~~l~~~l~r~~------~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 186 SKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp HHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHHH
Confidence 777788888886532 234579999999999999998764
No 141
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.01 E-value=0.034 Score=48.75 Aligned_cols=21 Identities=29% Similarity=0.534 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcc
Q 038448 163 IPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 163 i~I~G~gGiGKTtLA~~v~~~ 183 (385)
+.|+|++|+|||||++.+.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999999875
No 142
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.98 E-value=0.019 Score=49.58 Aligned_cols=33 Identities=24% Similarity=0.241 Sum_probs=25.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccccceEEE
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWT 196 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 196 (385)
.+++|+|+.|.|||||.+.+..- .......+++
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl---~~p~~G~i~~ 63 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLL---DAPTEGKVFL 63 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTS---SCCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcC---CCCCceEEEE
Confidence 58999999999999999999863 3333455554
No 143
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.96 E-value=0.007 Score=51.60 Aligned_cols=23 Identities=30% Similarity=0.345 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+|+|.|..|+||||+++.+...
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 37899999999999999998764
No 144
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.96 E-value=0.013 Score=50.65 Aligned_cols=24 Identities=25% Similarity=0.250 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
...|.|.|++|+||||+|+.+...
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999763
No 145
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.95 E-value=0.013 Score=49.07 Aligned_cols=22 Identities=32% Similarity=0.273 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 038448 162 VIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
+|+|.|+.|+||||+++.+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998764
No 146
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.94 E-value=0.016 Score=47.20 Aligned_cols=23 Identities=26% Similarity=0.238 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+++|+|+.|.|||||.+.+..-
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 68999999999999999988763
No 147
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.93 E-value=0.016 Score=48.84 Aligned_cols=25 Identities=24% Similarity=0.306 Sum_probs=22.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhc
Q 038448 158 DGLSVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
....+|+|+|+.|+||||+++.+..
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999999876
No 148
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.92 E-value=0.023 Score=48.58 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
...+|.|+|.+|+|||||+..+...
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 4589999999999999999988764
No 149
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=94.90 E-value=0.072 Score=49.17 Aligned_cols=56 Identities=16% Similarity=0.181 Sum_probs=38.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccc----cccceEEEEecCCCCHHHHHHHHHHHh
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSDVRVHN----HFDLKAWTCVSEDFDIIRVTKSILKSI 215 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~il~~l 215 (385)
.-.++.|+|.+|+||||||..+........ .-..++|++....++...+.. ++..+
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~ 180 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRF 180 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHc
Confidence 347899999999999999998876421211 124678999888777666543 34443
No 150
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.90 E-value=0.013 Score=50.35 Aligned_cols=24 Identities=25% Similarity=0.209 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
...|.|.|++|+||||+++.+...
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 467899999999999999999764
No 151
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.89 E-value=0.037 Score=50.64 Aligned_cols=55 Identities=16% Similarity=0.205 Sum_probs=38.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcccccccc----ccceEEEEecCCCCHHHHHHHHHHHh
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSDVRVHNH----FDLKAWTCVSEDFDIIRVTKSILKSI 215 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~~~il~~l 215 (385)
-.++.|+|.+|+||||||.++......... -..++|++....++...+.. ++..+
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~ 165 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKAL 165 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHT
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHh
Confidence 368999999999999999988764211111 23678998888777666543 34444
No 152
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.89 E-value=0.014 Score=51.42 Aligned_cols=23 Identities=30% Similarity=0.351 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
-.+|+|+|+.|+||||+++.+..
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999984
No 153
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.88 E-value=0.021 Score=51.09 Aligned_cols=22 Identities=36% Similarity=0.456 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
.+++|+|+.|.|||||.+.+..
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 5899999999999999999976
No 154
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.87 E-value=0.015 Score=50.12 Aligned_cols=24 Identities=17% Similarity=0.176 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
-.+++|+|+.|+|||||.+.+...
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc
Confidence 368999999999999999998764
No 155
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=94.86 E-value=0.013 Score=51.72 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
+-+.|+|++|+||||||+.+.+.
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 44889999999999999999874
No 156
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.85 E-value=0.021 Score=50.61 Aligned_cols=22 Identities=36% Similarity=0.480 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
.+++|+|+.|.|||||.+.+..
T Consensus 33 e~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 6899999999999999999986
No 157
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.84 E-value=0.016 Score=49.87 Aligned_cols=43 Identities=21% Similarity=0.237 Sum_probs=29.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccc----cccceEEEEecCCCC
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHN----HFDLKAWTCVSEDFD 203 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~vs~~~~ 203 (385)
.+++|+|++|+|||||++.+........ .-...+|+.-...+.
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~ 72 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR 72 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC
Confidence 7999999999999999999875211111 123467776544333
No 158
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.84 E-value=0.014 Score=49.77 Aligned_cols=22 Identities=27% Similarity=0.282 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 038448 162 VIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.|.|.|++|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998653
No 159
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=94.82 E-value=0.013 Score=52.37 Aligned_cols=21 Identities=29% Similarity=0.398 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcc
Q 038448 163 IPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 163 i~I~G~gGiGKTtLA~~v~~~ 183 (385)
+.++|++|.||||||+.+...
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 899999999999999999874
No 160
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.82 E-value=0.015 Score=49.10 Aligned_cols=23 Identities=26% Similarity=0.278 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+|.|.|+.|+||||+++.+...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 68999999999999999999874
No 161
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.82 E-value=0.017 Score=47.72 Aligned_cols=23 Identities=22% Similarity=0.172 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
-.+|.|+|+.|+||||+++.+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36889999999999999999876
No 162
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.81 E-value=0.038 Score=50.22 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
...+|+|+|..|+|||||++.+..
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999998876
No 163
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=94.80 E-value=0.016 Score=52.52 Aligned_cols=25 Identities=24% Similarity=0.209 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
..+.|.|+|++|+|||+||+.+++.
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHHHHHHH
Confidence 3467899999999999999999985
No 164
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.80 E-value=0.015 Score=50.63 Aligned_cols=21 Identities=29% Similarity=0.346 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 038448 161 SVIPIIGTGRIGKTTLAQLAY 181 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~ 181 (385)
.+++|+|++|+|||||++.+.
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHH
Confidence 689999999999999999887
No 165
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.79 E-value=0.025 Score=50.26 Aligned_cols=33 Identities=24% Similarity=0.262 Sum_probs=25.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccccceEEE
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWT 196 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 196 (385)
.+++|+|+.|.|||||.+.+..- .......+++
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl---~~p~~G~I~~ 70 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGY---LSPSHGECHL 70 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSS---SCCSSCEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHhcC---CCCCCcEEEE
Confidence 68999999999999999999873 3333455555
No 166
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.79 E-value=0.02 Score=48.53 Aligned_cols=24 Identities=13% Similarity=0.109 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
...+.|+|++|.||||+|..+.+.
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999888774
No 167
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=94.78 E-value=0.032 Score=50.29 Aligned_cols=24 Identities=29% Similarity=0.292 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
...+.++|.+|+|||++|+.+.+.
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 356789999999999999999874
No 168
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.74 E-value=0.015 Score=48.86 Aligned_cols=23 Identities=30% Similarity=0.312 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+++|+|..|+|||||.+.+...
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhh
Confidence 36899999999999999988764
No 169
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.74 E-value=0.019 Score=49.12 Aligned_cols=23 Identities=22% Similarity=0.238 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999864
No 170
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.73 E-value=0.045 Score=49.91 Aligned_cols=51 Identities=14% Similarity=0.196 Sum_probs=37.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCCCCHHHHHHHHHHHh
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSEDFDIIRVTKSILKSI 215 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l 215 (385)
.++.|.|.+|+||||||..+..+...+. ..++|++.- .+...+...++...
T Consensus 69 ~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~~ 119 (315)
T 3bh0_A 69 NFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVTA 119 (315)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHHH
Confidence 6899999999999999998876532222 567788765 35667777776654
No 171
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.73 E-value=0.046 Score=49.93 Aligned_cols=55 Identities=15% Similarity=0.142 Sum_probs=38.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccc---------cc-----cceEEEEecCCCCHHHHHHHHHHHh
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSDVRVHN---------HF-----DLKAWTCVSEDFDIIRVTKSILKSI 215 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~---------~F-----~~~~wv~vs~~~~~~~~~~~il~~l 215 (385)
-.++.|+|.+|+||||||.++..+..... .. ..++|++....++...+.. ++..+
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~ 166 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHA 166 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHc
Confidence 47899999999999999998875421111 11 4678999888777766654 34444
No 172
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.73 E-value=0.016 Score=49.51 Aligned_cols=22 Identities=18% Similarity=0.220 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 038448 162 VIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.|.|.|++|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998653
No 173
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.72 E-value=0.011 Score=48.86 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+++|+|..|+|||||+..+..-
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999888653
No 174
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=94.72 E-value=0.045 Score=48.79 Aligned_cols=21 Identities=29% Similarity=0.534 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcc
Q 038448 163 IPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 163 i~I~G~gGiGKTtLA~~v~~~ 183 (385)
+.|+|++|+|||||++.+...
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 899999999999999999875
No 175
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.71 E-value=0.047 Score=50.73 Aligned_cols=25 Identities=40% Similarity=0.348 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
....|.++|++|+|||++|+.+.+.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3467889999999999999999874
No 176
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=94.70 E-value=0.017 Score=51.92 Aligned_cols=152 Identities=11% Similarity=-0.010 Sum_probs=74.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCC-----CCHHHHHHHHHHHhhcCCCC--CccchHHhhc-
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSED-----FDIIRVTKSILKSIASDQLV--DDHDLNLLQK- 231 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-----~~~~~~~~~il~~l~~~~~~--~~~~~~~l~~- 231 (385)
.+.+.|+|++|+||||||+.+.+. ....| +.++.+.- .......+.++......... ..++.+.+..
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~--~~~~~---~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~ 128 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE--CSATF---LNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSE 128 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH--TTCEE---EEEESTTTSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBC
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH--hCCCe---EEeeHHHHhhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccc
Confidence 467899999999999999999874 22222 23333321 12344445554443322210 1122222210
Q ss_pred ---------hhhHhhHhh---hccCC--CCCcEEEEEcCChh-----HHhhcCCCCcccCCCCChhhHHhhhhccccCCC
Q 038448 232 ---------YNDWTNRSR---LFEAG--APGSKIVFTTRNLG-----VAEKMGPLPAYPLKELSNDDCLSVFSPHSLGEK 292 (385)
Q Consensus 232 ---------~~~w~~l~~---~l~~~--~~gs~IivTTR~~~-----va~~~~~~~~~~l~~L~~~~a~~Lf~~~a~~~~ 292 (385)
......+.. .++.. ..+..||.||.... +...+ ...+.+...+.++-..++...+-...
T Consensus 129 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R~--~~~i~~~~p~~~~r~~il~~~~~~~~ 206 (297)
T 3b9p_A 129 RSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRF--TKRVYVSLPDEQTRELLLNRLLQKQG 206 (297)
T ss_dssp C-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHHHC--CEEEECCCCCHHHHHHHHHHHHGGGS
T ss_pred cccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHhhC--CeEEEeCCcCHHHHHHHHHHHHHhcC
Confidence 001111211 12221 12345666776532 22222 23466677777777777665432111
Q ss_pred CCCCCccHHHHHHHHHHHcCCChH-HHHHHH
Q 038448 293 DFSTHPSLKEIGEKIVKKCNGLPL-VAKSLG 322 (385)
Q Consensus 293 ~~~~~~~l~~~~~~i~~~c~glPL-Ai~~~~ 322 (385)
. .. -......|++.+.|.+- ++..+.
T Consensus 207 ~-~~---~~~~~~~la~~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 207 S-PL---DTEALRRLAKITDGYSGSDLTALA 233 (297)
T ss_dssp C-CS---CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred C-CC---CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 1 11 13456778888998875 554443
No 177
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.69 E-value=0.019 Score=48.92 Aligned_cols=24 Identities=29% Similarity=0.151 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
..+|.|.|++|+||||+++.+...
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 378999999999999999998763
No 178
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.68 E-value=0.027 Score=49.27 Aligned_cols=22 Identities=32% Similarity=0.392 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
.+++|+|..|.|||||.+.+..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 6899999999999999999976
No 179
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.66 E-value=0.028 Score=46.73 Aligned_cols=25 Identities=36% Similarity=0.352 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
....|.|+|.+|+|||||...+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4467899999999999999998765
No 180
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.65 E-value=0.022 Score=49.69 Aligned_cols=23 Identities=17% Similarity=0.449 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+++|+|..|.|||||.+.+..-
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999763
No 181
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.65 E-value=0.026 Score=49.28 Aligned_cols=33 Identities=21% Similarity=0.135 Sum_probs=25.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccccceEEE
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWT 196 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 196 (385)
.+++|+|+.|.|||||.+.+..- .......+++
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl---~~p~~G~i~~ 65 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGL---VRAQKGKIIF 65 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS---SCCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCC---CCCCCceEEE
Confidence 58999999999999999999873 2333455554
No 182
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.64 E-value=0.012 Score=51.04 Aligned_cols=21 Identities=24% Similarity=0.308 Sum_probs=16.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 038448 161 SVIPIIGTGRIGKTTLAQLAY 181 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~ 181 (385)
.+++|+|+.|+|||||++.+.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CEEEEECSCC----CHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 689999999999999999998
No 183
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.63 E-value=0.026 Score=50.04 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
.+++|+|+.|.|||||.+.+..
T Consensus 51 ei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEEcCCCCcHHHHHHHHHc
Confidence 6899999999999999999986
No 184
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.63 E-value=0.027 Score=49.47 Aligned_cols=33 Identities=27% Similarity=0.223 Sum_probs=25.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccccceEEE
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWT 196 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 196 (385)
.+++|+|..|.|||||.+.+..- .......+++
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl---~~p~~G~I~i 68 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRF---YIPENGQVLI 68 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS---SCCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcC---CCCCCcEEEE
Confidence 58999999999999999999873 2333455555
No 185
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.62 E-value=0.024 Score=48.64 Aligned_cols=33 Identities=24% Similarity=0.222 Sum_probs=24.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccccceEEE
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWT 196 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 196 (385)
.+++|+|+.|.|||||.+.++.- .......+++
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl---~~p~~G~I~~ 68 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTY---LKPLKGEIIY 68 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTS---SCCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcC---CCCCCeEEEE
Confidence 57999999999999999999873 2233444544
No 186
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.60 E-value=0.043 Score=53.36 Aligned_cols=54 Identities=17% Similarity=0.183 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHh--hhhhhHHHHHHHHhcCCCCCCCCceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 122 MAAKIEDRTIRLQEI--EKDKEKEETVKLLLRDDLRTDDGLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 122 ~~~~i~~~~~~l~~i--~~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
+...++.+...+... +.+..++.+...+..+ .-|.++|++|+|||+||+.+.+.
T Consensus 9 ~~~~~~~l~~~l~~~ivGq~~~i~~l~~al~~~--------~~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 9 LAERISRLSSSLEKGLYERSHAIRLCLLAALSG--------ESVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp HHHHHHHHHHHHHTTCSSCHHHHHHHHHHHHHT--------CEEEEECCSSSSHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC--------CeeEeecCchHHHHHHHHHHHHH
Confidence 344455555555432 2244445555545432 35789999999999999999875
No 187
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.60 E-value=0.045 Score=50.04 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 158 DGLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
....+|+|+|.+|+||||++..+...
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~ 128 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANY 128 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45689999999999999999887653
No 188
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.58 E-value=0.028 Score=49.70 Aligned_cols=33 Identities=24% Similarity=0.230 Sum_probs=25.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccccceEEE
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWT 196 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 196 (385)
.+++|+|+.|.|||||.+.+..- .......+++
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl---~~p~~G~i~~ 66 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGF---LKADEGRVYF 66 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS---SCCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCC---CCCCCcEEEE
Confidence 58999999999999999999873 2333455554
No 189
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.57 E-value=0.027 Score=53.76 Aligned_cols=26 Identities=31% Similarity=0.247 Sum_probs=22.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 158 DGLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
....+|.|+|.+|+||||++..+...
T Consensus 97 ~~~~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 97 KKQNVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp SSCCCEEEECCSSSSTTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34679999999999999999887653
No 190
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.56 E-value=0.022 Score=51.48 Aligned_cols=25 Identities=24% Similarity=0.143 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
...+++++|.+|+||||++..+...
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~ 128 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAI 128 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999888653
No 191
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.56 E-value=0.028 Score=50.11 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
.+++|+|..|.|||||.+.++.
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999986
No 192
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=94.54 E-value=0.042 Score=50.95 Aligned_cols=42 Identities=26% Similarity=0.315 Sum_probs=29.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCCCC
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSEDFD 203 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~ 203 (385)
-.++.|+|.+|+|||||+..+.... ...=..++|++....++
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~--~~~gg~VlyId~E~s~~ 102 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEA--QKMGGVAAFIDAEHALD 102 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEecccccc
Confidence 3799999999999999999887642 21112456776555444
No 193
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.53 E-value=0.029 Score=49.58 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
.+++|+|+.|.|||||.+.+..
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999976
No 194
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=94.53 E-value=0.029 Score=51.94 Aligned_cols=25 Identities=16% Similarity=0.072 Sum_probs=22.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhc
Q 038448 158 DGLSVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
....+|+|+|.+|+|||||...+..
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHH
Confidence 3468999999999999999998875
No 195
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.51 E-value=0.021 Score=47.28 Aligned_cols=25 Identities=20% Similarity=0.213 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
...++.|+|..|+|||||+..+...
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHh
Confidence 3578999999999999999988764
No 196
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.51 E-value=0.03 Score=48.54 Aligned_cols=23 Identities=22% Similarity=0.481 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+++|+|+.|.|||||.+.+..-
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999863
No 197
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.50 E-value=0.04 Score=50.82 Aligned_cols=26 Identities=19% Similarity=0.229 Sum_probs=21.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 158 DGLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
+....|.|+|++|+||||+++.+...
T Consensus 22 g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 22 NYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 34567899999999999999988764
No 198
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.49 E-value=0.017 Score=50.88 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
.+|.|+|++|+||||+++.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999976
No 199
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.47 E-value=0.023 Score=51.49 Aligned_cols=25 Identities=32% Similarity=0.212 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
...+++|+|+.|+||||++..+..-
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4579999999999999999998764
No 200
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.44 E-value=0.047 Score=50.54 Aligned_cols=45 Identities=20% Similarity=0.217 Sum_probs=30.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccc----cceEEEEecCCCC
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSDVRVHNHF----DLKAWTCVSEDFD 203 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F----~~~~wv~vs~~~~ 203 (385)
.-.++.|+|.+|+|||||+..+.......... ..++|++....+.
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~ 178 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR 178 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCC
Confidence 34799999999999999999987642111111 2348888665543
No 201
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.44 E-value=0.046 Score=50.72 Aligned_cols=25 Identities=20% Similarity=0.199 Sum_probs=21.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhc
Q 038448 158 DGLSVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
+...+|+|+|.+|+|||||+..+..
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999988764
No 202
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.42 E-value=0.021 Score=48.26 Aligned_cols=21 Identities=24% Similarity=0.422 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 038448 162 VIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~ 182 (385)
+|+|.|+.|+||||+|+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999876
No 203
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.42 E-value=0.018 Score=49.34 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
..|.|.|++|+||||+|+.+...
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999764
No 204
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.41 E-value=0.057 Score=48.56 Aligned_cols=51 Identities=12% Similarity=0.156 Sum_probs=33.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcccccccccc-ceEEEEecCCCCHHHHHHHHHHHh
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHNHFD-LKAWTCVSEDFDIIRVTKSILKSI 215 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~il~~l 215 (385)
.+++|+|.+|+|||||+..+.... ...-. .++|++... +...+...++...
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~--~~~~G~~v~~~~~e~--~~~~~~~r~~~~~ 87 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQW--GTAMGKKVGLAMLEE--SVEETAEDLIGLH 87 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH--HHTSCCCEEEEESSS--CHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHH--HHHcCCeEEEEeCcC--CHHHHHHHHHHHH
Confidence 689999999999999999887652 22222 456666443 3445555554443
No 205
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.40 E-value=0.047 Score=52.04 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
...+|.++|.+|+||||++..+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 478999999999999999887764
No 206
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.40 E-value=0.032 Score=49.57 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
.+++|+|..|.|||||.+.++.
T Consensus 34 e~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 5899999999999999999875
No 207
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.38 E-value=0.027 Score=51.68 Aligned_cols=26 Identities=27% Similarity=0.146 Sum_probs=22.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 158 DGLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
+...+++|+|+.|+||||++..+..-
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35689999999999999999988763
No 208
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=94.37 E-value=0.059 Score=50.17 Aligned_cols=26 Identities=27% Similarity=0.307 Sum_probs=22.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 158 DGLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+.++|+|+|.+|+|||||...+...
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~ 202 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGL 202 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCC
Confidence 35678999999999999999998875
No 209
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.37 E-value=0.047 Score=52.08 Aligned_cols=26 Identities=23% Similarity=0.087 Sum_probs=22.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 158 DGLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
...++|.++|.+|+||||++..+...
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~ 123 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKF 123 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999887643
No 210
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.37 E-value=0.028 Score=51.08 Aligned_cols=26 Identities=27% Similarity=0.212 Sum_probs=22.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 158 DGLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
....+|.|+|.+|+||||++..+...
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHH
Confidence 35689999999999999999888764
No 211
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=94.34 E-value=0.034 Score=51.49 Aligned_cols=42 Identities=29% Similarity=0.290 Sum_probs=29.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCCCC
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSEDFD 203 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~ 203 (385)
-.++.|.|.+|+||||||.++.... ...=..++|++....++
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~--~~~g~~vlyi~~E~~~~ 102 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANA--QAAGGIAAFIDAEHALD 102 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH--HhCCCeEEEEECCCCcC
Confidence 4689999999999999998887542 21123466776555443
No 212
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.31 E-value=0.072 Score=50.22 Aligned_cols=56 Identities=18% Similarity=0.175 Sum_probs=35.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccc----cccceEEEEecCCCCHHHHHHHHHHHhh
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSDVRVHN----HFDLKAWTCVSEDFDIIRVTKSILKSIA 216 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~il~~l~ 216 (385)
=.++.|+|.+|+|||||+..++-...... .-..++|++....+....+ ..+++.++
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~g 237 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFG 237 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTT
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcC
Confidence 36899999999999999997652211111 1235788887666655443 33455443
No 213
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.31 E-value=0.023 Score=52.21 Aligned_cols=23 Identities=30% Similarity=0.329 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+|+|.|+.|+||||||..+...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 58999999999999999998764
No 214
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=94.29 E-value=0.029 Score=50.74 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
....+.++|++|+|||++|+.+.+.
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCcCHHHHHHHHHHH
Confidence 3468999999999999999999874
No 215
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.28 E-value=0.023 Score=48.94 Aligned_cols=22 Identities=32% Similarity=0.344 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 038448 162 VIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.|.|.|++|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999998763
No 216
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.27 E-value=0.024 Score=51.60 Aligned_cols=24 Identities=21% Similarity=0.189 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
...+.|+|.+|+|||+||..+++.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 367889999999999999999885
No 217
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.26 E-value=0.02 Score=48.89 Aligned_cols=22 Identities=27% Similarity=0.268 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
.+++|+|+.|.|||||.+.+..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999998875
No 218
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.25 E-value=0.024 Score=48.44 Aligned_cols=22 Identities=32% Similarity=0.368 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 038448 162 VIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.|.|.|++|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999763
No 219
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.22 E-value=0.036 Score=49.59 Aligned_cols=33 Identities=18% Similarity=0.054 Sum_probs=25.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccccceEEE
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWT 196 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 196 (385)
.+++|+|+.|.|||||.+.+..- .......+++
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl---~~p~~G~I~~ 80 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAY---EPATSGTVNL 80 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS---SCCSEEEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHhCC---CCCCCeEEEE
Confidence 58999999999999999999873 2233445554
No 220
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.22 E-value=0.033 Score=48.31 Aligned_cols=38 Identities=18% Similarity=0.166 Sum_probs=27.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecC
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSE 200 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~ 200 (385)
.++.|.|.+|+||||||.++.... ...=..++|++...
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~--~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNG--LKMGEPGIYVALEE 61 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH--HHTTCCEEEEESSS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEEccC
Confidence 689999999999999998776542 12223567777554
No 221
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.21 E-value=0.025 Score=48.20 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 038448 162 VIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
+|.|.|++|+||||.|+.+...
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999764
No 222
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.19 E-value=0.028 Score=53.40 Aligned_cols=26 Identities=23% Similarity=0.248 Sum_probs=23.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 158 DGLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
....+|.|+|++|+||||+|+.+...
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 45689999999999999999999764
No 223
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.19 E-value=0.026 Score=48.43 Aligned_cols=37 Identities=16% Similarity=0.091 Sum_probs=26.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEec
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVS 199 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs 199 (385)
.++.|+|.+|+|||||+..+.... ...=..++|++..
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~--~~~~~~v~~~~~~ 60 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKG--LRDGDPCIYVTTE 60 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH--HHHTCCEEEEESS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH--HHCCCeEEEEEcc
Confidence 689999999999999999987542 1111245666543
No 224
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.18 E-value=0.039 Score=51.22 Aligned_cols=43 Identities=21% Similarity=0.186 Sum_probs=30.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCCCC
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSEDFD 203 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~ 203 (385)
.-.++.|.|.+|+||||||.++.... ...=..++|++....++
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~--~~~g~~vlyid~E~s~~ 104 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHALD 104 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEeCCCCcc
Confidence 34689999999999999998887642 22223567777655443
No 225
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.15 E-value=0.029 Score=48.65 Aligned_cols=24 Identities=21% Similarity=0.106 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
...|.|.|++|+||||+|+.+...
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999999764
No 226
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=94.14 E-value=0.55 Score=43.37 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=23.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 158 DGLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.....|+++|.+|+|||||...+...
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~ 190 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTA 190 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45678999999999999999999765
No 227
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.13 E-value=0.028 Score=48.80 Aligned_cols=24 Identities=17% Similarity=0.230 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
..+|.|.|++|+||||+|+.+...
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998753
No 228
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.12 E-value=0.027 Score=47.02 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.-.|+|+|.+|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 467899999999999999998764
No 229
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.10 E-value=0.026 Score=46.78 Aligned_cols=22 Identities=36% Similarity=0.401 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 038448 162 VIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
-|+|+|.+|+|||||...+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998873
No 230
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.10 E-value=0.027 Score=50.78 Aligned_cols=22 Identities=32% Similarity=0.339 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999876
No 231
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=94.09 E-value=0.036 Score=48.72 Aligned_cols=25 Identities=28% Similarity=0.247 Sum_probs=21.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhc
Q 038448 158 DGLSVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
....++.+.|.||+|||||+..+..
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHH
Confidence 4568889999999999999998874
No 232
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.08 E-value=0.035 Score=50.90 Aligned_cols=24 Identities=17% Similarity=0.256 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.++|.|+|+.|+||||||..+...
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999874
No 233
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=94.05 E-value=0.032 Score=45.28 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999764
No 234
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.05 E-value=0.029 Score=49.35 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
.+++|+|..|.|||||.+.+..
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999987
No 235
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.04 E-value=0.032 Score=51.82 Aligned_cols=25 Identities=32% Similarity=0.212 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
...+++|+|..|+|||||+..+..-
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhh
Confidence 4579999999999999999998764
No 236
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.03 E-value=0.055 Score=51.48 Aligned_cols=25 Identities=28% Similarity=0.094 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
...+|.++|.+|+||||++..+...
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999887653
No 237
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.00 E-value=0.034 Score=44.49 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.-|.++|.+|+|||||...+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999998765
No 238
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.97 E-value=0.029 Score=51.13 Aligned_cols=23 Identities=30% Similarity=0.342 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+|.|+|+.|+||||||..+...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999998764
No 239
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=93.96 E-value=0.038 Score=48.81 Aligned_cols=23 Identities=26% Similarity=0.195 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
..|.|+|.+|+|||+||+.+++.
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHT
T ss_pred CCEEEECCCCCcHHHHHHHHHHh
Confidence 45779999999999999999875
No 240
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.94 E-value=0.018 Score=51.96 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=18.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
...+|+|.|..|+||||+|+.+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998876
No 241
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.94 E-value=0.044 Score=48.14 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+++|+|+.|.|||||.+.+..-
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 58999999999999999999873
No 242
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.91 E-value=0.069 Score=45.66 Aligned_cols=23 Identities=17% Similarity=0.190 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
..|.|-|+.|+||||+++.+...
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 68999999999999999999774
No 243
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=93.90 E-value=0.11 Score=47.34 Aligned_cols=37 Identities=11% Similarity=-0.026 Sum_probs=26.9
Q ss_pred hhhHHHHHHHHhcCCCCCCCCceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 139 DKEKEETVKLLLRDDLRTDDGLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 139 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
+..++.+...+... .-+.++|.+|+|||+||+.+.+.
T Consensus 33 ~~~~~~l~~~l~~~--------~~vll~G~pGtGKT~la~~la~~ 69 (331)
T 2r44_A 33 KYMINRLLIGICTG--------GHILLEGVPGLAKTLSVNTLAKT 69 (331)
T ss_dssp HHHHHHHHHHHHHT--------CCEEEESCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC--------CeEEEECCCCCcHHHHHHHHHHH
Confidence 44455555555432 35789999999999999999874
No 244
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=93.90 E-value=0.016 Score=51.34 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 038448 162 VIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
-+.|+|++|+|||+||+.+++.
T Consensus 46 ~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 3779999999999999999875
No 245
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.88 E-value=0.032 Score=49.62 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+++|+|..|.|||||.+.++.-
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999873
No 246
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=93.87 E-value=0.031 Score=49.88 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
.++.|+|.+|+|||||+..+..
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 6899999999999999988875
No 247
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.84 E-value=0.031 Score=49.44 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+++|+|+.|.|||||.+.+..-
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 58999999999999999999874
No 248
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.84 E-value=0.037 Score=50.19 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
++|.|.|+.|+||||||..+...
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred cEEEEECCCcCCHHHHHHHHHHh
Confidence 68999999999999999998764
No 249
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=93.83 E-value=0.031 Score=46.90 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.-.|+|+|.+|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 356899999999999999999865
No 250
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.81 E-value=0.056 Score=44.04 Aligned_cols=26 Identities=31% Similarity=0.365 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 158 DGLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.....|.|+|.+|+|||||...+.+.
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34567899999999999999999764
No 251
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.80 E-value=0.04 Score=49.81 Aligned_cols=25 Identities=28% Similarity=0.137 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
..++|.|+|+.|+||||||..+...
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHHh
Confidence 4578999999999999999998763
No 252
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.74 E-value=0.071 Score=51.81 Aligned_cols=25 Identities=28% Similarity=0.211 Sum_probs=20.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhc
Q 038448 158 DGLSVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
...++|.|+|.+|+||||++..+..
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999988874
No 253
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.72 E-value=0.038 Score=48.96 Aligned_cols=22 Identities=23% Similarity=0.270 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
.+++|+|+.|+|||||.+.+..
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHH
Confidence 6899999999999999988765
No 254
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.71 E-value=0.035 Score=50.27 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
.+++|+|+.|.|||||++.+..
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhh
Confidence 6899999999999999998865
No 255
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=93.67 E-value=0.036 Score=44.37 Aligned_cols=22 Identities=23% Similarity=0.530 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 038448 162 VIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
-|.++|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998765
No 256
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=93.66 E-value=0.039 Score=44.84 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.--|.|+|.+|+|||||...+...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 356899999999999999998765
No 257
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.66 E-value=0.035 Score=48.89 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+++|+|+.|.|||||.+.+..-
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999863
No 258
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.64 E-value=0.041 Score=49.91 Aligned_cols=22 Identities=23% Similarity=0.593 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
.+++|+|..|.|||||++.+..
T Consensus 81 e~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTT
T ss_pred CEEEEECCCCchHHHHHHHHHc
Confidence 6899999999999999999875
No 259
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=93.64 E-value=0.069 Score=51.34 Aligned_cols=24 Identities=25% Similarity=0.254 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+-+.++|++|+|||+||+.+.+.
T Consensus 63 ~~~iLl~GppGtGKT~la~ala~~ 86 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALAIAQE 86 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHHHHHHH
Confidence 356889999999999999999875
No 260
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=93.60 E-value=0.051 Score=45.11 Aligned_cols=26 Identities=23% Similarity=0.475 Sum_probs=22.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 158 DGLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.....|.|+|.+|+|||||...+.+.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35677899999999999999999865
No 261
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=93.60 E-value=0.048 Score=45.02 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
....|+++|.+|+|||||...+...
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467899999999999999999874
No 262
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=93.59 E-value=0.042 Score=47.69 Aligned_cols=25 Identities=28% Similarity=0.274 Sum_probs=21.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhc
Q 038448 158 DGLSVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
....+|+|+|+.|+||||+++.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999876
No 263
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=93.58 E-value=0.057 Score=50.04 Aligned_cols=22 Identities=36% Similarity=0.462 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
.+++|+|+.|.|||||.+.+..
T Consensus 31 e~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCchHHHHHHHHhc
Confidence 5899999999999999999975
No 264
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.55 E-value=0.056 Score=47.88 Aligned_cols=23 Identities=30% Similarity=0.316 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+++|+|..|.|||||.+.+..-
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999863
No 265
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=93.52 E-value=0.039 Score=47.76 Aligned_cols=25 Identities=24% Similarity=0.046 Sum_probs=22.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhc
Q 038448 158 DGLSVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
..-.+|+|.|..|+|||||++.+..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 3457999999999999999999876
No 266
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=93.48 E-value=0.42 Score=45.92 Aligned_cols=52 Identities=23% Similarity=0.434 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCCCCCCCceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 121 MMAAKIEDRTIRLQEIEKDKEKEETVKLLLRDDLRTDDGLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 121 ~~~~~i~~~~~~l~~i~~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+..++..+..+++.+.......+... .++ .|+|+|.+|+|||||...+...
T Consensus 196 ~~~~~i~~l~~~l~~~~~~~~~~~~~r----------~~~-kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 196 AIISDIENIAAEISQLLATKDKGELLR----------TGL-KVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp THHHHHHHHHHHHHHHTTTHHHHHHHH----------HCE-EEEEEECTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhc----------CCC-EEEEEcCCCCCHHHHHHHHhCC
Confidence 355667777777766655433333222 133 3899999999999999998764
No 267
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.48 E-value=0.042 Score=47.58 Aligned_cols=25 Identities=28% Similarity=0.298 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.-.+|.|.|++|+||||+++.+...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3478999999999999999999875
No 268
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.46 E-value=0.046 Score=52.74 Aligned_cols=43 Identities=19% Similarity=0.219 Sum_probs=29.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCCCC
Q 038448 158 DGLSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSEDFD 203 (385)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~ 203 (385)
..-.+++|+|..|+|||||+..+..- .+ .-...+++.-...+.
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgl--l~-~~~G~V~l~g~D~~r 333 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQ--FE-QQGKSVMLAAGDTFR 333 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHH--HH-HTTCCEEEECCCTTC
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHH--hh-hcCCeEEEecCcccc
Confidence 34579999999999999999998763 22 223455554344443
No 269
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=93.41 E-value=0.11 Score=47.82 Aligned_cols=24 Identities=25% Similarity=0.202 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
.-.+++|+|.+|+|||||...+..
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999998874
No 270
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=93.40 E-value=0.059 Score=44.58 Aligned_cols=27 Identities=15% Similarity=0.334 Sum_probs=22.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhccc
Q 038448 158 DGLSVIPIIGTGRIGKTTLAQLAYSDV 184 (385)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 184 (385)
.....|.|+|.+|+|||||...+....
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCc
Confidence 345678899999999999999998763
No 271
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=93.40 E-value=0.064 Score=55.12 Aligned_cols=39 Identities=26% Similarity=0.333 Sum_probs=30.8
Q ss_pred hhhHHHHHHHHhcCCCCCCCCceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 139 DKEKEETVKLLLRDDLRTDDGLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 139 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
+.+++.++..|.... ..-+.++|.+|+|||++|+.+.+.
T Consensus 186 ~~~i~~l~~~l~~~~------~~~vLL~G~pGtGKT~la~~la~~ 224 (758)
T 3pxi_A 186 SKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQQ 224 (758)
T ss_dssp HHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHHH
T ss_pred hHHHHHHHHHHhCCC------CCCeEEECCCCCCHHHHHHHHHHH
Confidence 777888888886532 234789999999999999988764
No 272
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=93.39 E-value=0.048 Score=49.34 Aligned_cols=26 Identities=31% Similarity=0.480 Sum_probs=21.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 158 DGLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
...++|+|+|-||+||||+|..+..-
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~ 64 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAA 64 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCccHHHHHHHHHHH
Confidence 46689999999999999999877653
No 273
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=93.39 E-value=0.041 Score=48.98 Aligned_cols=21 Identities=29% Similarity=0.567 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 038448 162 VIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~ 182 (385)
.++|+|..|+|||||.+.++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999998875
No 274
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.37 E-value=0.045 Score=52.10 Aligned_cols=147 Identities=10% Similarity=0.090 Sum_probs=73.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCC---C--CHHHHHHHHHHHhhcCCCC--CccchHHhh
Q 038448 158 DGLSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSED---F--DIIRVTKSILKSIASDQLV--DDHDLNLLQ 230 (385)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~---~--~~~~~~~~il~~l~~~~~~--~~~~~~~l~ 230 (385)
..++=|.++|++|.|||.||+++.+. ....| +.++.+.- + .....++.++.......+. ..+.++.+-
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~e--~~~~f---~~v~~s~l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~ 287 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAAQ--TNATF---LKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIG 287 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHH--HTCEE---EEEEGGGGCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHH
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHHH--hCCCE---EEEehhhhhhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhh
Confidence 34577899999999999999999985 33233 33443321 1 1234555555443332221 123333332
Q ss_pred ---------chhh----HhhHhhhccCC--CCCcEEEEEcCChhHHhh-c-CC---CCcccCCCCChhhHHhhhhccccC
Q 038448 231 ---------KYND----WTNRSRLFEAG--APGSKIVFTTRNLGVAEK-M-GP---LPAYPLKELSNDDCLSVFSPHSLG 290 (385)
Q Consensus 231 ---------~~~~----w~~l~~~l~~~--~~gs~IivTTR~~~va~~-~-~~---~~~~~l~~L~~~~a~~Lf~~~a~~ 290 (385)
.... ...+...+... ..+--||.||........ + .+ ...+.+...+.++-.++|..+.-.
T Consensus 288 ~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~ 367 (434)
T 4b4t_M 288 TKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRK 367 (434)
T ss_dssp CCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHH
T ss_pred hccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcC
Confidence 0011 11233333221 223355667765543321 1 11 135677777877777777644311
Q ss_pred CCCCCCCccHHHHHHHHHHHcCCC
Q 038448 291 EKDFSTHPSLKEIGEKIVKKCNGL 314 (385)
Q Consensus 291 ~~~~~~~~~l~~~~~~i~~~c~gl 314 (385)
......-++ ..|++.+.|+
T Consensus 368 -~~~~~dvdl----~~lA~~t~G~ 386 (434)
T 4b4t_M 368 -MTTDDDINW----QELARSTDEF 386 (434)
T ss_dssp -SCBCSCCCH----HHHHHHCSSC
T ss_pred -CCCCCcCCH----HHHHHhCCCC
Confidence 111111223 4567777775
No 275
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.36 E-value=0.052 Score=43.63 Aligned_cols=24 Identities=21% Similarity=0.434 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.--|.|+|.+|+|||||...+.+.
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 345789999999999999998765
No 276
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=93.34 E-value=0.083 Score=44.85 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
+.|+|=|..|+||||+++.+...
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~ 25 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHR 25 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHH
Confidence 57889999999999999998875
No 277
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.33 E-value=0.052 Score=46.10 Aligned_cols=26 Identities=35% Similarity=0.345 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 158 DGLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.....|.++|.+|+|||||...+...
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 35567899999999999999998865
No 278
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=93.32 E-value=0.043 Score=45.41 Aligned_cols=23 Identities=22% Similarity=0.479 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
--|.++|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46789999999999999999765
No 279
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=93.31 E-value=0.068 Score=49.75 Aligned_cols=42 Identities=24% Similarity=0.175 Sum_probs=29.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCCCC
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSEDFD 203 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~ 203 (385)
-.++.|.|.+|+||||||..+.... ...=..++|++....++
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~--~~~g~~vlyi~~E~s~~ 115 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQA--QKAGGTCAFIDAEHALD 115 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCC
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHH--HHCCCeEEEEECCCChh
Confidence 3688899999999999998887642 22223577887665443
No 280
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=93.30 E-value=0.043 Score=44.17 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 038448 162 VIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
-|.++|.+|+|||||...+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 4789999999999999998654
No 281
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=93.30 E-value=0.045 Score=43.91 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.-|.++|.+|+|||||...+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46889999999999999998765
No 282
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=93.28 E-value=0.048 Score=44.59 Aligned_cols=23 Identities=22% Similarity=0.255 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
..|+|+|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999865
No 283
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=93.28 E-value=0.069 Score=49.59 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
.+++|+|+.|.|||||.+.+..
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEEcCCCchHHHHHHHHhc
Confidence 6899999999999999999875
No 284
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.25 E-value=0.1 Score=44.53 Aligned_cols=23 Identities=30% Similarity=0.290 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
..|.+-|..|+||||+++.+...
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~ 26 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVET 26 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999875
No 285
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.25 E-value=0.051 Score=47.30 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
..|.|.|..|+||||+++.+...
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 68999999999999999999874
No 286
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.24 E-value=0.058 Score=43.50 Aligned_cols=24 Identities=25% Similarity=0.392 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.--|.++|.+|+|||||...+...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 356889999999999999998765
No 287
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=93.23 E-value=0.05 Score=48.98 Aligned_cols=23 Identities=22% Similarity=0.481 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+++|+|..|.|||||.+.+..-
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 58999999999999999999763
No 288
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.23 E-value=0.05 Score=43.89 Aligned_cols=23 Identities=22% Similarity=0.427 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
--|.++|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999999764
No 289
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.22 E-value=0.05 Score=45.83 Aligned_cols=23 Identities=22% Similarity=0.196 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
+.|.|.|.+|+||||||..+...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 56889999999999999998764
No 290
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=93.19 E-value=0.048 Score=43.83 Aligned_cols=22 Identities=23% Similarity=0.490 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 038448 162 VIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
-|.|+|.+|+|||||...+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999998764
No 291
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=93.17 E-value=0.053 Score=50.68 Aligned_cols=24 Identities=29% Similarity=0.130 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
.-.+++|+|++|.|||||++.+..
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 446999999999999999999986
No 292
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.15 E-value=0.054 Score=48.85 Aligned_cols=25 Identities=24% Similarity=0.105 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
...+++++|.+|+||||++..+..-
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999988764
No 293
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.13 E-value=0.075 Score=49.20 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
.+++|+|+.|.|||||.+.+..
T Consensus 42 e~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 6899999999999999999875
No 294
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.12 E-value=0.049 Score=43.61 Aligned_cols=23 Identities=22% Similarity=0.465 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
--|.++|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35889999999999999888754
No 295
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=93.11 E-value=0.065 Score=43.18 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
--|.|+|.+|+|||||...+..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4578999999999999999864
No 296
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=93.11 E-value=0.048 Score=49.79 Aligned_cols=25 Identities=28% Similarity=0.311 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
...++.|+|+.|.|||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4689999999999999999999854
No 297
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.10 E-value=0.05 Score=43.78 Aligned_cols=23 Identities=17% Similarity=0.355 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhccc
Q 038448 162 VIPIIGTGRIGKTTLAQLAYSDV 184 (385)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~~ 184 (385)
-|.++|.+|+|||||...+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999887653
No 298
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=93.08 E-value=0.049 Score=44.91 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
..--|.|+|.+|+|||||...+.+.
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcC
Confidence 3456789999999999999998765
No 299
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=93.07 E-value=0.064 Score=44.18 Aligned_cols=25 Identities=32% Similarity=0.327 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
....|.|+|.+|+|||||...+.+.
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999999865
No 300
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=93.06 E-value=0.078 Score=49.19 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
.+++|+|+.|.|||||.+.+..
T Consensus 30 e~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEEcCCCchHHHHHHHHHC
Confidence 5899999999999999999875
No 301
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=93.04 E-value=0.051 Score=43.78 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
--|.++|.+|+|||||...+.+.
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45889999999999999998765
No 302
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=93.03 E-value=0.049 Score=50.89 Aligned_cols=24 Identities=38% Similarity=0.333 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
...+.++|++|+|||++|+.+.+.
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHH
Confidence 356889999999999999999874
No 303
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=93.02 E-value=0.079 Score=49.21 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
.+++|+|+.|.|||||.+.+..
T Consensus 30 e~~~llGpnGsGKSTLLr~iaG 51 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAG 51 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCchHHHHHHHHhc
Confidence 5899999999999999999875
No 304
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=93.01 E-value=0.11 Score=47.20 Aligned_cols=42 Identities=7% Similarity=-0.028 Sum_probs=31.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcccccccc--ccceEEEEecCCCCHH
Q 038448 162 VIPIIGTGRIGKTTLAQLAYSDVRVHNH--FDLKAWTCVSEDFDII 205 (385)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~~~~~~~--F~~~~wv~vs~~~~~~ 205 (385)
++-|.|.+|+|||||+.++... .... =..++||+....++..
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~--~~~~g~g~~vlyId~E~s~~~~ 73 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSS--YMRQYPDAVCLFYDSEFGITPA 73 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH--HHHHCTTCEEEEEESSCCCCHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEeccchhhHH
Confidence 6899999999999999888764 2222 2357888877766653
No 305
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=93.00 E-value=0.079 Score=49.42 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
.+++|+|+.|.|||||.+.+..
T Consensus 30 e~~~llGpnGsGKSTLLr~iaG 51 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAG 51 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCcHHHHHHHHHHc
Confidence 5899999999999999999875
No 306
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=93.00 E-value=0.067 Score=55.78 Aligned_cols=141 Identities=13% Similarity=0.108 Sum_probs=68.8
Q ss_pred hhhhHHHHHHHHhcCCCCCCCCceEEEEEcCCCCcHHHHHHHHhcccc---ccccc-c-ceEEEEecCC-------CCHH
Q 038448 138 KDKEKEETVKLLLRDDLRTDDGLSVIPIIGTGRIGKTTLAQLAYSDVR---VHNHF-D-LKAWTCVSED-------FDII 205 (385)
Q Consensus 138 ~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~---~~~~F-~-~~~wv~vs~~-------~~~~ 205 (385)
.+.+...+++.|.... ..-+.++|.+|+||||||+.+.+... +.... . ..++++.+.- -...
T Consensus 175 r~~~i~~l~~~l~~~~------~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~g~~~ 248 (854)
T 1qvr_A 175 RDEEIRRVIQILLRRT------KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFE 248 (854)
T ss_dssp CHHHHHHHHHHHHCSS------CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------CHH
T ss_pred cHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccchHHH
Confidence 3777888888885532 23468999999999999999887421 11111 1 1233332221 1234
Q ss_pred HHHHHHHHHhhcCCCC---CccchHHhh----c---hhhHhhHhhhccCCCCCcEEEEEcCChhHHh-----hc-CCCCc
Q 038448 206 RVTKSILKSIASDQLV---DDHDLNLLQ----K---YNDWTNRSRLFEAGAPGSKIVFTTRNLGVAE-----KM-GPLPA 269 (385)
Q Consensus 206 ~~~~~il~~l~~~~~~---~~~~~~~l~----~---~~~w~~l~~~l~~~~~gs~IivTTR~~~va~-----~~-~~~~~ 269 (385)
..++.++..+...... ..++++.+. . .+....+...+.. .+-.+|.+|....... .+ .....
T Consensus 249 ~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~--~~i~~I~at~~~~~~~~~~d~aL~rRf~~ 326 (854)
T 1qvr_A 249 ERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR--GELRLIGATTLDEYREIEKDPALERRFQP 326 (854)
T ss_dssp HHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHT--TCCCEEEEECHHHHHHHTTCTTTCSCCCC
T ss_pred HHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhC--CCeEEEEecCchHHhhhccCHHHHhCCce
Confidence 4566666666443111 112233222 1 1111223333322 2334555554333211 11 11235
Q ss_pred ccCCCCChhhHHhhhhc
Q 038448 270 YPLKELSNDDCLSVFSP 286 (385)
Q Consensus 270 ~~l~~L~~~~a~~Lf~~ 286 (385)
+.+.+++.++...++..
T Consensus 327 i~l~~p~~~e~~~iL~~ 343 (854)
T 1qvr_A 327 VYVDEPTVEETISILRG 343 (854)
T ss_dssp EEECCCCHHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHh
Confidence 78899999988888753
No 307
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=92.98 E-value=0.08 Score=49.37 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
.+++|+|+.|.|||||.+.+..
T Consensus 38 e~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCChHHHHHHHHHc
Confidence 6899999999999999999875
No 308
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=92.98 E-value=0.08 Score=49.44 Aligned_cols=22 Identities=23% Similarity=0.440 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
.+++|+|+.|.|||||.+.+..
T Consensus 30 e~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEEcCCCchHHHHHHHHHc
Confidence 5899999999999999999975
No 309
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=92.96 E-value=0.075 Score=43.27 Aligned_cols=25 Identities=20% Similarity=0.376 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
...-|.|+|.+|+|||||...+.+.
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4567899999999999999998765
No 310
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=92.95 E-value=0.051 Score=44.30 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
..--|.|+|.+|+|||||...+...
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC
Confidence 4566899999999999999999765
No 311
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=92.95 E-value=0.064 Score=49.56 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
.+++|+|+.|.|||||.+.+..
T Consensus 27 e~~~llGpnGsGKSTLLr~iaG 48 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAG 48 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHT
T ss_pred CEEEEECCCCccHHHHHHHHHc
Confidence 5899999999999999999975
No 312
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=92.93 E-value=0.056 Score=44.57 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 038448 162 VIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
-|.|+|.+|+|||||...+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999998875
No 313
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=92.93 E-value=0.054 Score=44.86 Aligned_cols=25 Identities=20% Similarity=0.208 Sum_probs=20.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
..--|.|+|.+|+|||||...+.+.
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3456889999999999999887654
No 314
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=92.88 E-value=0.056 Score=43.55 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
--|.|+|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 45889999999999999998764
No 315
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=92.85 E-value=0.056 Score=43.97 Aligned_cols=25 Identities=24% Similarity=0.485 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
..--|.|+|.+|+|||||...+...
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcC
Confidence 3456899999999999999998754
No 316
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=92.85 E-value=0.067 Score=43.60 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
...-|.|+|.+|+|||||...+...
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 4567899999999999999988765
No 317
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=92.83 E-value=0.15 Score=46.85 Aligned_cols=53 Identities=17% Similarity=0.060 Sum_probs=37.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCCCCHHHHHHHHHHHhhc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSEDFDIIRVTKSILKSIAS 217 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~ 217 (385)
.++.|.|.+|+||||||..+..+... .=..++|++.- .+...+...++.....
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSlE--ms~~ql~~Rlls~~~~ 99 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSLE--MSAEQLALRALSDLTS 99 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEESS--SCHHHHHHHHHHHHHC
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeCC--CCHHHHHHHHHHHhhC
Confidence 68899999999999999988765322 11346677653 4567777777766543
No 318
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=92.82 E-value=0.097 Score=53.78 Aligned_cols=140 Identities=16% Similarity=0.165 Sum_probs=72.2
Q ss_pred hhhHHHHHHHHhcCCCCCCCCceEEEEEcCCCCcHHHHHHHHhcccc---cccc-ccceEEE-Eec-------CCCCHHH
Q 038448 139 DKEKEETVKLLLRDDLRTDDGLSVIPIIGTGRIGKTTLAQLAYSDVR---VHNH-FDLKAWT-CVS-------EDFDIIR 206 (385)
Q Consensus 139 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~---~~~~-F~~~~wv-~vs-------~~~~~~~ 206 (385)
+.+.+.+++.|... ...-+.|+|.+|+|||++|+.+.+... +... +.+.+|. ..+ ..-....
T Consensus 192 ~~~i~~l~~~l~~~------~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~e~ 265 (758)
T 1r6b_X 192 EKELERAIQVLCRR------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEK 265 (758)
T ss_dssp HHHHHHHHHHHTSS------SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHHH
T ss_pred HHHHHHHHHHHhcc------CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccchHHH
Confidence 67778888887543 234568999999999999998876421 1111 2333332 111 1123556
Q ss_pred HHHHHHHHhhcCCCC--CccchHHhh-------chhh-HhhHhhhccCCCCCcEEEEEcCChhHHhhcCC-------CCc
Q 038448 207 VTKSILKSIASDQLV--DDHDLNLLQ-------KYND-WTNRSRLFEAGAPGSKIVFTTRNLGVAEKMGP-------LPA 269 (385)
Q Consensus 207 ~~~~il~~l~~~~~~--~~~~~~~l~-------~~~~-w~~l~~~l~~~~~gs~IivTTR~~~va~~~~~-------~~~ 269 (385)
.++.++..+...... ..++++.+- ...+ ...+...+. ..+..+|.+|........+.. ...
T Consensus 266 ~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~--~~~~~~I~at~~~~~~~~~~~d~aL~~Rf~~ 343 (758)
T 1r6b_X 266 RFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTTYQEFSNIFEKDRALARRFQK 343 (758)
T ss_dssp HHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS--SCCCEEEEEECHHHHHCCCCCTTSSGGGEEE
T ss_pred HHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh--CCCeEEEEEeCchHHhhhhhcCHHHHhCceE
Confidence 667777766543210 112222221 0111 122332222 234466666654443221111 124
Q ss_pred ccCCCCChhhHHhhhhc
Q 038448 270 YPLKELSNDDCLSVFSP 286 (385)
Q Consensus 270 ~~l~~L~~~~a~~Lf~~ 286 (385)
+.+..++.++...++..
T Consensus 344 i~v~~p~~~e~~~il~~ 360 (758)
T 1r6b_X 344 IDITEPSIEETVQIING 360 (758)
T ss_dssp EECCCCCHHHHHHHHHH
T ss_pred EEcCCCCHHHHHHHHHH
Confidence 77888888887777654
No 319
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=92.82 E-value=0.057 Score=44.79 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
..--|.|+|.+|+|||||...+.+.
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhC
Confidence 3456889999999999999888765
No 320
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=92.80 E-value=0.063 Score=44.27 Aligned_cols=22 Identities=18% Similarity=0.354 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
.+.+|+|..|.|||||+..++-
T Consensus 27 g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 4889999999999999998864
No 321
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=92.78 E-value=0.059 Score=43.33 Aligned_cols=23 Identities=17% Similarity=0.312 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
--|.++|.+|+|||||...+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45889999999999999998754
No 322
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=92.77 E-value=0.058 Score=43.28 Aligned_cols=21 Identities=29% Similarity=0.297 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcc
Q 038448 163 IPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 163 i~I~G~gGiGKTtLA~~v~~~ 183 (385)
|.++|.+|+|||||...+...
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999998654
No 323
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=92.74 E-value=0.068 Score=44.45 Aligned_cols=28 Identities=18% Similarity=0.160 Sum_probs=22.8
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhccc
Q 038448 157 DDGLSVIPIIGTGRIGKTTLAQLAYSDV 184 (385)
Q Consensus 157 ~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 184 (385)
......|.|+|.+|+|||||...+....
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSCCC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3456789999999999999999997753
No 324
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=92.71 E-value=0.071 Score=46.24 Aligned_cols=48 Identities=15% Similarity=0.157 Sum_probs=31.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCCCCHHHHHHHH
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSEDFDIIRVTKSI 211 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 211 (385)
.++.|.|.+|+|||+||.++..+. ....-..+++++... +...+...+
T Consensus 31 ~l~~i~G~pG~GKT~l~l~~~~~~-~~~~~~~v~~~s~E~--~~~~~~~~~ 78 (251)
T 2zts_A 31 TTVLLTGGTGTGKTTFAAQFIYKG-AEEYGEPGVFVTLEE--RARDLRREM 78 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH-HHHHCCCEEEEESSS--CHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHH-HHhcCCCceeecccC--CHHHHHHHH
Confidence 688999999999999998865431 122233566666544 344554443
No 325
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=92.69 E-value=0.058 Score=44.70 Aligned_cols=24 Identities=38% Similarity=0.331 Sum_probs=19.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.--|.|+|.+|+|||||.+.+.+.
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~ 37 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSK 37 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHHhh
Confidence 456889999999999999777643
No 326
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=92.69 E-value=0.043 Score=48.48 Aligned_cols=25 Identities=24% Similarity=0.260 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
....|.|.|..|+||||+++.+...
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 4579999999999999999988764
No 327
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=92.69 E-value=0.068 Score=48.52 Aligned_cols=28 Identities=21% Similarity=0.354 Sum_probs=24.0
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 156 TDDGLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 156 ~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
..+....|+|+|.+|+|||||...+...
T Consensus 6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 6 HHMKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3456789999999999999999998765
No 328
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=92.68 E-value=0.05 Score=45.64 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
..|+++|.+|+|||||...+...
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 45789999999999999998764
No 329
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=92.65 E-value=0.061 Score=44.73 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
..|.++|.+|+|||||...+.++
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46789999999999999998864
No 330
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=92.64 E-value=0.062 Score=44.20 Aligned_cols=24 Identities=17% Similarity=0.342 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDV 184 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~ 184 (385)
--|.|+|.+|+|||||...+.+..
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 457899999999999999998653
No 331
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=92.64 E-value=0.16 Score=45.47 Aligned_cols=27 Identities=19% Similarity=0.235 Sum_probs=23.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhccc
Q 038448 158 DGLSVIPIIGTGRIGKTTLAQLAYSDV 184 (385)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 184 (385)
.....|+|+|.+|+|||||...+....
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCC
Confidence 356789999999999999999998753
No 332
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=92.64 E-value=0.099 Score=42.49 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
..--|.|+|.+|+|||||...+.+.
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhC
Confidence 3456889999999999999998764
No 333
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=92.63 E-value=0.063 Score=43.64 Aligned_cols=26 Identities=23% Similarity=0.158 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSDV 184 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 184 (385)
...-|.|+|.+|+|||||...+....
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCC
Confidence 45678999999999999999987653
No 334
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=92.59 E-value=0.085 Score=45.29 Aligned_cols=26 Identities=15% Similarity=0.291 Sum_probs=22.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 158 DGLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.....|.|+|.+|+|||||...+...
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45577899999999999999999765
No 335
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=92.59 E-value=0.085 Score=47.77 Aligned_cols=23 Identities=22% Similarity=0.241 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
..|.|+|.+|+|||++|+.+.+.
T Consensus 26 ~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 26 ATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp SCEEEESCTTSCHHHHHHHHHHH
T ss_pred CcEEEECCCCchHHHHHHHHHHh
Confidence 45779999999999999999874
No 336
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=92.58 E-value=0.15 Score=44.30 Aligned_cols=24 Identities=29% Similarity=0.289 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
-.+|.|.|+.|+||||+++.+...
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~ 50 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVET 50 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999875
No 337
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=92.57 E-value=0.064 Score=50.35 Aligned_cols=22 Identities=36% Similarity=0.436 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
.+|.|.|+.|+||||||..+..
T Consensus 3 ~~i~i~GptgsGKttla~~La~ 24 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQ 24 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHH
Confidence 5899999999999999988865
No 338
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=92.56 E-value=0.064 Score=44.06 Aligned_cols=25 Identities=24% Similarity=0.228 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
..--|.|+|.+|+|||||...+.+.
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 3456889999999999999998765
No 339
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=92.56 E-value=0.065 Score=43.93 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
--|.++|.+|+|||||...+.++
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999988754
No 340
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=92.54 E-value=0.071 Score=47.08 Aligned_cols=23 Identities=39% Similarity=0.484 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
++|+|.|-||+||||+|..+..-
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~ 24 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSG 24 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEEecCCCCcHHHHHHHHHHH
Confidence 57888899999999999877653
No 341
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=92.52 E-value=0.051 Score=44.37 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
--|.++|.+|+|||||...+.+.
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45789999999999999998764
No 342
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=92.52 E-value=0.06 Score=53.04 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
...++.++|++|+||||||+.+...
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999874
No 343
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=92.52 E-value=0.065 Score=49.62 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
.+++|+|+.|.|||||.+.+..
T Consensus 32 e~~~llGpnGsGKSTLLr~iaG 53 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAG 53 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 5899999999999999999875
No 344
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=92.51 E-value=0.066 Score=43.50 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
--|.|+|.+|+|||||...+..+
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45889999999999999998754
No 345
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.49 E-value=0.075 Score=44.77 Aligned_cols=25 Identities=32% Similarity=0.325 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
...-|.|+|.+|+|||||...+...
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3456889999999999999988754
No 346
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=92.49 E-value=0.067 Score=44.14 Aligned_cols=25 Identities=20% Similarity=0.187 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
..--|.|+|.+|+|||||...+.+.
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcC
Confidence 3456889999999999999998764
No 347
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=92.47 E-value=0.078 Score=47.47 Aligned_cols=24 Identities=33% Similarity=0.434 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.++|+|.|-||+||||+|..+..-
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~ 25 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAA 25 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHH
Confidence 368888999999999999877653
No 348
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=92.46 E-value=0.18 Score=43.41 Aligned_cols=26 Identities=31% Similarity=0.280 Sum_probs=22.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 158 DGLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.....|.|.|+.|+||||+++.+...
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~ 44 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEY 44 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999999875
No 349
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=92.46 E-value=0.067 Score=44.37 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
..--|.|+|.+|+|||||...+...
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcC
Confidence 3456899999999999999998764
No 350
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=92.46 E-value=0.071 Score=44.40 Aligned_cols=22 Identities=27% Similarity=0.099 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
.++.|+|+.|+||||++..+..
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~ 25 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVE 25 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999966554
No 351
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=92.45 E-value=0.068 Score=43.73 Aligned_cols=25 Identities=24% Similarity=0.313 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
....|.|+|.+|+|||||...+.+.
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcC
Confidence 3467889999999999999998854
No 352
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=92.44 E-value=0.038 Score=46.65 Aligned_cols=25 Identities=12% Similarity=0.125 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.-..|+|+|.+|+|||||...+...
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3467999999999999999888764
No 353
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=92.43 E-value=0.098 Score=42.83 Aligned_cols=25 Identities=20% Similarity=0.434 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
..--|.|+|.+|+|||||...+.+.
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4456889999999999999998865
No 354
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=92.43 E-value=0.069 Score=43.76 Aligned_cols=24 Identities=29% Similarity=0.537 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
..-|.|+|.+|+|||||...+...
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 456889999999999999998765
No 355
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=92.41 E-value=0.07 Score=43.61 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.--|.|+|.+|+|||||...+...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 345789999999999999998764
No 356
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=92.40 E-value=0.06 Score=51.98 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
+-|.|+|++|+|||+||+.+.+.
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 34789999999999999999874
No 357
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=92.40 E-value=0.075 Score=44.37 Aligned_cols=25 Identities=20% Similarity=0.469 Sum_probs=20.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
..--|.++|.+|+|||||...+.+.
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhc
Confidence 3456889999999999999877664
No 358
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=92.37 E-value=0.071 Score=43.53 Aligned_cols=24 Identities=21% Similarity=0.266 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
..-|.|+|.+|+|||||...+...
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 356889999999999999998765
No 359
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=92.37 E-value=0.092 Score=42.32 Aligned_cols=24 Identities=29% Similarity=0.205 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
...|.++|.+|+|||||...+...
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 356889999999999999999764
No 360
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=92.35 E-value=0.071 Score=49.63 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
-..++|+|..|.|||||++.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~g 192 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAA 192 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998875
No 361
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.32 E-value=0.071 Score=44.42 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.--|.|+|.+|+|||||...+...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 356889999999999999998765
No 362
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=92.30 E-value=0.17 Score=46.56 Aligned_cols=25 Identities=20% Similarity=0.161 Sum_probs=21.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhc
Q 038448 158 DGLSVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
....+|+|+|.+|+|||||+..+..
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHH
Confidence 3568999999999999999988864
No 363
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=92.29 E-value=0.075 Score=44.35 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=19.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
.--|.|+|.+|+|||||...+..
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 35688999999999999998863
No 364
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=92.29 E-value=0.079 Score=44.35 Aligned_cols=25 Identities=32% Similarity=0.375 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSDV 184 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~ 184 (385)
.--|.|+|.+|+|||||...+.+..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 4568999999999999999987653
No 365
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=92.26 E-value=0.064 Score=52.11 Aligned_cols=21 Identities=29% Similarity=0.534 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcc
Q 038448 163 IPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 163 i~I~G~gGiGKTtLA~~v~~~ 183 (385)
+.|+|++|+||||||+.+.+.
T Consensus 67 vLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999999875
No 366
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=92.26 E-value=0.08 Score=51.81 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
...+|.++|++|.||||+|+.+..
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~ 57 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTR 57 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998864
No 367
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.25 E-value=0.075 Score=43.31 Aligned_cols=25 Identities=20% Similarity=0.186 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
..--|.++|.+|+|||||...+...
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3456899999999999999998764
No 368
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=92.23 E-value=0.074 Score=44.60 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
...-|.|+|.+|+|||||...+...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 4567899999999999999998765
No 369
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=92.22 E-value=0.1 Score=43.68 Aligned_cols=25 Identities=28% Similarity=0.522 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
...-|.|+|.+|+|||||...+...
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 4467899999999999999998754
No 370
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=92.21 E-value=0.074 Score=44.93 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
..--|.|+|.+|+|||||...+...
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3456889999999999999998765
No 371
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=92.20 E-value=0.066 Score=48.33 Aligned_cols=24 Identities=33% Similarity=0.192 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
..+++++|.+|+||||++..+...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~ 121 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYF 121 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 679999999999999999888753
No 372
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=92.19 E-value=0.093 Score=43.48 Aligned_cols=26 Identities=27% Similarity=0.289 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSDV 184 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 184 (385)
..--|.|+|.+|+|||||...+..+.
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC
Confidence 34568999999999999999988653
No 373
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=92.17 E-value=0.079 Score=43.59 Aligned_cols=26 Identities=19% Similarity=0.196 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSDV 184 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 184 (385)
...-|.++|.+|+|||||...+.+..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 44678999999999999999998754
No 374
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=92.17 E-value=0.076 Score=44.14 Aligned_cols=24 Identities=17% Similarity=0.268 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.--|.|+|.+|+|||||...+...
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 456899999999999999998765
No 375
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=92.13 E-value=0.068 Score=45.55 Aligned_cols=22 Identities=32% Similarity=0.357 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
.+|+|.|+.|+||||+++.+..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998865
No 376
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=92.12 E-value=0.075 Score=45.94 Aligned_cols=25 Identities=20% Similarity=0.207 Sum_probs=20.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
....++|.|++|+||||+|+.+...
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~~ 31 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKEK 31 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHHH
Confidence 3456899999999999999998764
No 377
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=92.12 E-value=0.091 Score=47.50 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
....|+|+|.+|+|||||...+...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3468999999999999999998765
No 378
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=92.11 E-value=0.077 Score=44.40 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=20.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
..-.|.|+|.+|+|||||...+..
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCC
T ss_pred cEEEEEEECCCCCCHHHHHHHHHh
Confidence 456789999999999999999853
No 379
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=92.11 E-value=0.044 Score=50.36 Aligned_cols=21 Identities=19% Similarity=0.249 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHhcc
Q 038448 163 IPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 163 i~I~G~gGiGKTtLA~~v~~~ 183 (385)
+.|+|.+|+|||+||+.+.+.
T Consensus 48 vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 48 VLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp EEEECCGGGCTTHHHHHHHHH
T ss_pred EEEECCCCccHHHHHHHHHHh
Confidence 889999999999999999874
No 380
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=92.10 E-value=0.085 Score=44.60 Aligned_cols=25 Identities=20% Similarity=0.191 Sum_probs=20.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
....|.|+|.+|+|||||...+...
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457889999999999999998765
No 381
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=92.08 E-value=0.079 Score=44.39 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSDV 184 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 184 (385)
...-|.|+|.+|+|||||...+.+..
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCC
Confidence 34668999999999999999988653
No 382
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=92.07 E-value=0.1 Score=45.26 Aligned_cols=27 Identities=15% Similarity=0.201 Sum_probs=22.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhccc
Q 038448 158 DGLSVIPIIGTGRIGKTTLAQLAYSDV 184 (385)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 184 (385)
.....|+|+|.+|+|||||...+....
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCC
Confidence 345678999999999999999998753
No 383
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=92.06 E-value=0.11 Score=44.74 Aligned_cols=23 Identities=17% Similarity=0.008 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
-.|.+.|.||+||||+|..+...
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~ 29 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHA 29 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHH
Confidence 34778899999999998877664
No 384
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=92.06 E-value=0.13 Score=46.57 Aligned_cols=21 Identities=14% Similarity=0.273 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 038448 161 SVIPIIGTGRIGKTTLAQLAY 181 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~ 181 (385)
.+++++|++|+|||||.+.+.
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 588999999999999999998
No 385
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=92.06 E-value=0.084 Score=44.10 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
..--|.|+|.+|+|||||...+.+.
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456889999999999999998765
No 386
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=92.05 E-value=0.067 Score=48.38 Aligned_cols=20 Identities=25% Similarity=0.546 Sum_probs=18.3
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 038448 163 IPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 163 i~I~G~gGiGKTtLA~~v~~ 182 (385)
|+|+|.+|+|||||...++.
T Consensus 21 I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 21 LMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEETTSSHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 49999999999999999875
No 387
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=92.02 E-value=0.082 Score=43.91 Aligned_cols=26 Identities=27% Similarity=0.308 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSDV 184 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 184 (385)
..--|.++|.+|+|||||...+.+..
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCC
Confidence 34568899999999999999988753
No 388
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=92.01 E-value=0.083 Score=43.72 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.--|.|+|.+|+|||||...+.+.
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 356889999999999999999764
No 389
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=91.99 E-value=0.084 Score=43.65 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.--|.|+|.+|+|||||...+...
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 457899999999999999998765
No 390
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=91.98 E-value=0.086 Score=44.18 Aligned_cols=25 Identities=24% Similarity=0.264 Sum_probs=20.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
..--|.|+|.+|+|||||...+.+.
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC-
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3456889999999999999998764
No 391
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=91.98 E-value=0.08 Score=44.09 Aligned_cols=24 Identities=25% Similarity=0.191 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.--|.|+|.+|+|||||...+...
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCSS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhC
Confidence 356899999999999999999754
No 392
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=91.96 E-value=0.21 Score=48.21 Aligned_cols=54 Identities=20% Similarity=0.295 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcCCCCCCCCceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 119 DHMMAAKIEDRTIRLQEIEKDKEKEETVKLLLRDDLRTDDGLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 119 ~~~~~~~i~~~~~~l~~i~~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
+..+..++..+...++.+.....+.+..+ .+++ |+|+|.+|+|||||...+...
T Consensus 203 ~~~l~~~i~~l~~~l~~~~~~~~~~~~~r----------~~~k-V~ivG~~nvGKSSLln~L~~~ 256 (476)
T 3gee_A 203 RDELTMQIETLRSEVNRLIDSYQHGRIVS----------EGVS-TVIAGKPNAGKSTLLNTLLGQ 256 (476)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HCEE-EEEECCTTSSHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhhc----------CCCE-EEEECCCCCCHHHHHHHHhCC
Confidence 34567777888877777655433333222 1333 899999999999999988765
No 393
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=91.91 E-value=0.072 Score=51.81 Aligned_cols=25 Identities=12% Similarity=-0.028 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
...+|.+.|++|+||||+|+.+...
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~ 418 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLST 418 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHH
T ss_pred cceEEEecccCCCCHHHHHHHHHHH
Confidence 4478999999999999999999874
No 394
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=91.91 E-value=0.086 Score=43.70 Aligned_cols=24 Identities=29% Similarity=0.266 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.--|.|+|.+|+|||||...+.+.
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 445889999999999999998764
No 395
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.88 E-value=0.083 Score=43.80 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.--|.|+|.+|+|||||...+.+.
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eeEEEEECCCCcCHHHHHHHHhcC
Confidence 345889999999999999998764
No 396
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=91.84 E-value=0.082 Score=43.95 Aligned_cols=25 Identities=32% Similarity=0.396 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSDV 184 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~ 184 (385)
.--|.|+|.+|+|||||...+.++.
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC--
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC
Confidence 3458899999999999999987653
No 397
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=91.80 E-value=0.08 Score=49.23 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+++|+|..|.|||||++.+..-
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 58999999999999999999873
No 398
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=91.80 E-value=0.09 Score=43.46 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
...-|.|+|.+|+|||||...+...
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcC
Confidence 3457899999999999999998754
No 399
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=91.80 E-value=0.13 Score=42.71 Aligned_cols=24 Identities=17% Similarity=0.292 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.--|.|+|.+|+|||||...+...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 455889999999999999999875
No 400
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=91.79 E-value=0.091 Score=43.46 Aligned_cols=23 Identities=35% Similarity=0.403 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
--|.|+|.+|+|||||...+.+.
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46889999999999999998765
No 401
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=91.79 E-value=0.091 Score=44.58 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.--|.|+|.+|+|||||...+.+.
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC-
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 356889999999999999998764
No 402
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.77 E-value=0.12 Score=42.93 Aligned_cols=25 Identities=20% Similarity=0.317 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
..--|.|+|.+|+|||||...+...
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcC
Confidence 3456889999999999999998764
No 403
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=91.76 E-value=0.13 Score=49.84 Aligned_cols=153 Identities=11% Similarity=0.068 Sum_probs=74.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecC---C-CC-HHHHHHHHHHHhhcCCC--CCccchHHhhc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSE---D-FD-IIRVTKSILKSIASDQL--VDDHDLNLLQK 231 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~---~-~~-~~~~~~~il~~l~~~~~--~~~~~~~~l~~ 231 (385)
...-|.|+|.+|+|||+||+.+.+. ....| +.++.+. . +. ....+..++........ -..++++.+..
T Consensus 237 ~~~~vLL~GppGtGKT~lAraia~~--~~~~f---v~vn~~~l~~~~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~ 311 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAP 311 (489)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHH--CSSEE---EEEEHHHHHTSCTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCB
T ss_pred CCCcEEEECcCCCCHHHHHHHHHHH--hCCCE---EEEEchHhhhhhcchhHHHHHHHHHHHHhcCCcEEEecchhhhcc
Confidence 3456889999999999999999874 22222 2333211 1 11 22233444444332221 01233333321
Q ss_pred ----------hhhHhhHhhhccC--CCCCcEEEEEcCChhH-Hhhc----CCCCcccCCCCChhhHHhhhhccccCCCCC
Q 038448 232 ----------YNDWTNRSRLFEA--GAPGSKIVFTTRNLGV-AEKM----GPLPAYPLKELSNDDCLSVFSPHSLGEKDF 294 (385)
Q Consensus 232 ----------~~~w~~l~~~l~~--~~~gs~IivTTR~~~v-a~~~----~~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~ 294 (385)
......+...+.. ...+..||.||..... ...+ .....+.+...+.++-.++|..++-. ...
T Consensus 312 ~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~-~~l 390 (489)
T 3hu3_A 312 KREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN-MKL 390 (489)
T ss_dssp CTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTT-SCB
T ss_pred ccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhc-CCC
Confidence 0112223333321 2234456667765432 1111 11235788888999988888766422 111
Q ss_pred CCCccHHHHHHHHHHHcCCC-hHHHHHH
Q 038448 295 STHPSLKEIGEKIVKKCNGL-PLVAKSL 321 (385)
Q Consensus 295 ~~~~~l~~~~~~i~~~c~gl-PLAi~~~ 321 (385)
.....+ ..++..+.|. +-.+..+
T Consensus 391 ~~~~~l----~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 391 ADDVDL----EQVANETHGHVGADLAAL 414 (489)
T ss_dssp CTTCCH----HHHHHTCTTCCHHHHHHH
T ss_pred cchhhH----HHHHHHccCCcHHHHHHH
Confidence 112233 4466677774 5444444
No 404
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=91.74 E-value=0.098 Score=48.85 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
-.+++|+|+.|+|||||...+..
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 36899999999999999988764
No 405
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=91.72 E-value=0.091 Score=44.11 Aligned_cols=25 Identities=28% Similarity=0.311 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
...-|.|+|.+|+|||||...+.+.
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC
Confidence 3456889999999999999998765
No 406
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=91.70 E-value=0.088 Score=43.23 Aligned_cols=25 Identities=24% Similarity=0.222 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
..--|.|+|.+|+|||||...+...
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcC
Confidence 3456889999999999999999864
No 407
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=91.70 E-value=0.19 Score=44.31 Aligned_cols=37 Identities=16% Similarity=0.133 Sum_probs=26.9
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 143 EETVKLLLRDDLRTDDGLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 143 ~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.-+.+||.... +...-|.++|++|.|||.+|..+.+.
T Consensus 91 ~~l~~~l~~~~----~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 91 SVFLGWATKKF----GKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHHHTTCS----TTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhCCC----CCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 34566664321 23457999999999999999998863
No 408
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=91.67 E-value=0.18 Score=49.81 Aligned_cols=26 Identities=19% Similarity=0.078 Sum_probs=22.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 158 DGLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
+...+|.|.|++|+||||+|+.+...
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~ 419 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVT 419 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHH
Confidence 45578999999999999999999764
No 409
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=91.67 E-value=0.21 Score=47.89 Aligned_cols=50 Identities=16% Similarity=0.131 Sum_probs=34.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCCCCHHHHHHHHHH
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSEDFDIIRVTKSILK 213 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~ 213 (385)
.++.|.|.+|+||||||..+..+.... .=..++|++... +...+...++.
T Consensus 204 ~liiI~G~pG~GKTtl~l~ia~~~~~~-~g~~Vl~~s~E~--s~~~l~~r~~~ 253 (454)
T 2r6a_A 204 DLIIVAARPSVGKTAFALNIAQNVATK-TNENVAIFSLEM--SAQQLVMRMLC 253 (454)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHH-SSCCEEEEESSS--CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECCC--CHHHHHHHHHH
Confidence 689999999999999999887753211 112577777544 44566666544
No 410
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=91.66 E-value=0.081 Score=45.01 Aligned_cols=27 Identities=19% Similarity=0.213 Sum_probs=23.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhccc
Q 038448 158 DGLSVIPIIGTGRIGKTTLAQLAYSDV 184 (385)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 184 (385)
.....|+|+|.+|+|||||...+....
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 345678999999999999999998763
No 411
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=91.65 E-value=0.16 Score=43.75 Aligned_cols=23 Identities=30% Similarity=0.263 Sum_probs=18.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
..|.|-|+.|+||||+++.+.+.
T Consensus 26 ~~I~~eG~~GsGKsT~~~~l~~~ 48 (227)
T 3v9p_A 26 KFITFEGIDGAGKTTHLQWFCDR 48 (227)
T ss_dssp CEEEEECCC---CHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999875
No 412
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=91.64 E-value=0.11 Score=45.93 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
...|+++|.+|+|||||...+...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999998764
No 413
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=91.62 E-value=0.13 Score=47.05 Aligned_cols=23 Identities=22% Similarity=0.148 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+++|+|..|.|||||++.+..-
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGG
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999998763
No 414
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=91.60 E-value=0.096 Score=44.83 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 038448 162 VIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
-|.|+|-+|+|||+|...+.++
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 3678999999999999988654
No 415
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.60 E-value=0.085 Score=43.17 Aligned_cols=25 Identities=28% Similarity=0.162 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
....|.|+|.+|+|||||...+...
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~ 41 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIG 41 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3467889999999999999998754
No 416
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=91.57 E-value=0.14 Score=43.29 Aligned_cols=24 Identities=21% Similarity=0.191 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
...+|+|+|++|+||+|+|..+-+
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~ 33 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQS 33 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHH
Confidence 457999999999999999988754
No 417
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=91.55 E-value=0.095 Score=48.42 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+++|+|..|+|||||.+.+.+.
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 68999999999999999998874
No 418
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.55 E-value=0.14 Score=42.10 Aligned_cols=24 Identities=25% Similarity=0.245 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
...|.|+|.+|+|||||...+.+.
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 467899999999999999999854
No 419
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=91.51 E-value=0.099 Score=43.98 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.--|.++|.+|+|||||...+.++
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 356789999999999999888765
No 420
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=91.48 E-value=0.11 Score=49.22 Aligned_cols=25 Identities=24% Similarity=0.105 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
...++.++|.+|+||||++..+...
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~ 121 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALY 121 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999887653
No 421
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=91.47 E-value=0.12 Score=43.17 Aligned_cols=25 Identities=16% Similarity=0.254 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
...-|.|+|.+|+|||||...+...
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 4467899999999999999998754
No 422
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.46 E-value=0.1 Score=44.01 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.-|.|+|.+|+|||||...+...
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHhcC
Confidence 46889999999999999998765
No 423
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=91.45 E-value=0.1 Score=44.05 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
..--|.|+|.+|+|||||...+.+.
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 3456889999999999999988754
No 424
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=91.45 E-value=0.1 Score=43.29 Aligned_cols=24 Identities=29% Similarity=0.427 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
..-|.++|.+|+|||||...+.+.
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 356889999999999999999865
No 425
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=91.42 E-value=0.11 Score=50.20 Aligned_cols=25 Identities=20% Similarity=0.203 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
...+|.++|++|+||||+++.+...
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3468899999999999999988653
No 426
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=91.41 E-value=0.11 Score=48.88 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
.+++|+|+.|.|||||.+.+..
T Consensus 48 e~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCChHHHHHHHHhC
Confidence 6899999999999999999875
No 427
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=91.41 E-value=0.14 Score=43.67 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=20.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
...-|.|+|.+|+|||||...+..
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 345689999999999999999874
No 428
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=91.39 E-value=0.1 Score=43.76 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
..--|.|+|.+|+|||||...+.+.
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhhC
Confidence 3466899999999999999998764
No 429
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=91.37 E-value=0.13 Score=45.04 Aligned_cols=25 Identities=16% Similarity=0.190 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
....|+|+|.+|+|||||...+...
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999998764
No 430
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=91.35 E-value=0.11 Score=48.18 Aligned_cols=22 Identities=18% Similarity=0.274 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
.+++|+|+.|.|||||.+.+..
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5999999999999999988754
No 431
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.35 E-value=0.11 Score=43.83 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
..-|.|+|.+|+|||||...+...
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999998754
No 432
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=91.35 E-value=0.18 Score=45.57 Aligned_cols=34 Identities=21% Similarity=0.241 Sum_probs=26.6
Q ss_pred hHHHHHHHHhcCCCCCCCCceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 141 EKEETVKLLLRDDLRTDDGLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 141 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
..+++..++. -.+++|+|++|+|||||.+.+...
T Consensus 159 gv~~lf~~l~---------geiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 159 GIEELKEYLK---------GKISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp THHHHHHHHS---------SSEEEEECSTTSSHHHHHHHHSTT
T ss_pred CHHHHHHHhc---------CCeEEEECCCCCcHHHHHHHhccc
Confidence 4556666652 158899999999999999999864
No 433
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=91.34 E-value=0.22 Score=47.11 Aligned_cols=24 Identities=13% Similarity=0.241 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
...+++|+|..|+|||||.+.+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 446999999999999999999987
No 434
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=91.33 E-value=0.11 Score=48.12 Aligned_cols=23 Identities=17% Similarity=0.264 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+++|+|.+|+|||||...+...
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCC
T ss_pred CEEEEECCCCccHHHHHHHHhcc
Confidence 48999999999999999999874
No 435
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=91.31 E-value=0.084 Score=43.69 Aligned_cols=25 Identities=20% Similarity=0.154 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSDV 184 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~ 184 (385)
.--|.|+|.+|+|||||...+....
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 4568899999999999999987653
No 436
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=91.27 E-value=0.11 Score=43.54 Aligned_cols=23 Identities=35% Similarity=0.481 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.-|.|+|.+|+|||||...+..+
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46889999999999999998765
No 437
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=91.25 E-value=0.12 Score=43.81 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.--|.|+|.+|+|||||...+...
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 456889999999999999998865
No 438
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=91.24 E-value=0.066 Score=43.92 Aligned_cols=25 Identities=28% Similarity=0.271 Sum_probs=10.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
...-|.|+|.+|+|||||...+.+.
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEEECCCCC------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456899999999999999888754
No 439
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=91.22 E-value=0.088 Score=51.81 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+|.|+|+.|+|||||++.+...
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCChHHHHHHHHHHh
Confidence 68999999999999999999874
No 440
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=91.15 E-value=0.17 Score=44.92 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
...|+++|.+|+|||||...+...
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC
Confidence 357899999999999999999864
No 441
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=91.13 E-value=0.11 Score=44.02 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
--|.|+|.+|+|||||...+...
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 45789999999999999998765
No 442
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=91.08 E-value=0.1 Score=49.40 Aligned_cols=21 Identities=29% Similarity=0.515 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHhcc
Q 038448 163 IPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 163 i~I~G~gGiGKTtLA~~v~~~ 183 (385)
++|+|..|+|||||...++.-
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 999999999999999998764
No 443
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=91.02 E-value=0.27 Score=44.40 Aligned_cols=26 Identities=19% Similarity=0.294 Sum_probs=23.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 158 DGLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.....|+|+|.+|+|||||...+...
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~ 47 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGR 47 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTS
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCC
Confidence 46778999999999999999999765
No 444
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=90.98 E-value=0.32 Score=40.83 Aligned_cols=22 Identities=32% Similarity=0.273 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 038448 162 VIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.|+|=|..|+||||.++.+++.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~ 23 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4778899999999999999875
No 445
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=90.95 E-value=0.24 Score=40.93 Aligned_cols=35 Identities=26% Similarity=0.303 Sum_probs=24.7
Q ss_pred EEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCCCC
Q 038448 163 IPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSEDFD 203 (385)
Q Consensus 163 i~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~ 203 (385)
+.|+|.+|+||||+|.++... -..++++.-+..++
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~------~~~~~yiaT~~~~d 36 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD------APQVLYIATSQILD 36 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS------CSSEEEEECCCC--
T ss_pred EEEECCCCCcHHHHHHHHHhc------CCCeEEEecCCCCC
Confidence 679999999999999998763 12355666555444
No 446
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=90.90 E-value=0.32 Score=46.43 Aligned_cols=54 Identities=17% Similarity=0.017 Sum_probs=37.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCCCCHHHHHHHHHHHhh
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSEDFDIIRVTKSILKSIA 216 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~ 216 (385)
-.++.|.|.+|+||||||..+..+.... .=..++|++... +...+...++....
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~-~g~~vl~~slE~--~~~~l~~R~~~~~~ 253 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALK-EGVGVGIYSLEM--PAAQLTLRMMCSEA 253 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESSS--CHHHHHHHHHHHHT
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEECCC--CHHHHHHHHHHHHc
Confidence 3688999999999999999887653211 113577777653 46677777665543
No 447
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=90.90 E-value=0.24 Score=46.86 Aligned_cols=22 Identities=23% Similarity=0.298 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
.+++|+|+.|.|||||...+..
T Consensus 168 gii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHh
Confidence 6899999999999999988865
No 448
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=90.86 E-value=0.15 Score=46.04 Aligned_cols=25 Identities=24% Similarity=0.321 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
....|+|+|.+|+|||||...+...
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4467999999999999999998765
No 449
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=90.84 E-value=0.14 Score=45.02 Aligned_cols=23 Identities=30% Similarity=0.312 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
+.|+++|.+|+|||||...+...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 46899999999999999998765
No 450
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=90.81 E-value=0.16 Score=43.98 Aligned_cols=25 Identities=16% Similarity=0.120 Sum_probs=19.8
Q ss_pred CceEEEEEcC-CCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGT-GRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~-gGiGKTtLA~~v~~~ 183 (385)
..++|+|++. ||+||||+|..+...
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~ 28 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFA 28 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHH
Confidence 3578888865 899999999877653
No 451
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=90.81 E-value=0.14 Score=52.47 Aligned_cols=148 Identities=10% Similarity=0.038 Sum_probs=74.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEe----cCCC-CHHHHHHHHHHHhhcCCCC--CccchHHhh
Q 038448 158 DGLSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCV----SEDF-DIIRVTKSILKSIASDQLV--DDHDLNLLQ 230 (385)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v----s~~~-~~~~~~~~il~~l~~~~~~--~~~~~~~l~ 230 (385)
..++-|.++|++|.|||+||+.+++. ...+| +.|+. +... .....++.++.......+. ..++++.+-
T Consensus 236 ~~p~GILL~GPPGTGKT~LAraiA~e--lg~~~---~~v~~~~l~sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~ 310 (806)
T 3cf2_A 236 KPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIA 310 (806)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHTT--TTCEE---EEEEHHHHHSSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTC
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH--hCCeE---EEEEhHHhhcccchHHHHHHHHHHHHHHHcCCeEEEEehhcccc
Confidence 34577899999999999999999985 33333 34442 2211 2345566666655433221 122333322
Q ss_pred ------ch----hhHhhHhhhccC--CCCCcEEEEEcCChhHH-hhcC----CCCcccCCCCChhhHHhhhhccccCCCC
Q 038448 231 ------KY----NDWTNRSRLFEA--GAPGSKIVFTTRNLGVA-EKMG----PLPAYPLKELSNDDCLSVFSPHSLGEKD 293 (385)
Q Consensus 231 ------~~----~~w~~l~~~l~~--~~~gs~IivTTR~~~va-~~~~----~~~~~~l~~L~~~~a~~Lf~~~a~~~~~ 293 (385)
.. ....++...+.. ...+--||.||...+.. ..+. -...+.+...+.++-.++|..+.-. ..
T Consensus 311 ~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~-~~ 389 (806)
T 3cf2_A 311 PKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN-MK 389 (806)
T ss_dssp CTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSS-SE
T ss_pred cccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcC-CC
Confidence 00 011122222211 11233455566544322 1111 1235778888888778887765422 11
Q ss_pred CCCCccHHHHHHHHHHHcCCCh
Q 038448 294 FSTHPSLKEIGEKIVKKCNGLP 315 (385)
Q Consensus 294 ~~~~~~l~~~~~~i~~~c~glP 315 (385)
.....+ ...|++++.|.-
T Consensus 390 ~~~dvd----l~~lA~~T~Gfs 407 (806)
T 3cf2_A 390 LADDVD----LEQVANETHGHV 407 (806)
T ss_dssp ECTTCC----HHHHHHHCCSCC
T ss_pred CCcccC----HHHHHHhcCCCC
Confidence 111223 345677787764
No 452
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=90.77 E-value=0.11 Score=49.41 Aligned_cols=24 Identities=29% Similarity=0.292 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+-|.++|++|+||||+|+.+...
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~ 73 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKL 73 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHHHHHHH
Confidence 456889999999999999999874
No 453
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=90.76 E-value=0.14 Score=45.20 Aligned_cols=42 Identities=17% Similarity=0.183 Sum_probs=27.2
Q ss_pred CCceEEEEEc-CCCCcHHHHHHHHhccccccccccceEEEEecCCC
Q 038448 158 DGLSVIPIIG-TGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSEDF 202 (385)
Q Consensus 158 ~~~~vi~I~G-~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~ 202 (385)
...++|+|++ -||+||||+|..+..-.. .. ..++-|......
T Consensus 25 ~~~~vI~v~s~kGGvGKTT~a~~LA~~la--~g-~~VlliD~D~~~ 67 (267)
T 3k9g_A 25 KKPKIITIASIKGGVGKSTSAIILATLLS--KN-NKVLLIDMDTQA 67 (267)
T ss_dssp -CCEEEEECCSSSSSCHHHHHHHHHHHHT--TT-SCEEEEEECTTC
T ss_pred CCCeEEEEEeCCCCchHHHHHHHHHHHHH--CC-CCEEEEECCCCC
Confidence 3568888875 589999999988876432 22 335556655443
No 454
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=90.71 E-value=0.11 Score=49.98 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+++|+|..|+|||||++.+..-
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCc
Confidence 58999999999999999998873
No 455
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=90.68 E-value=0.13 Score=43.03 Aligned_cols=39 Identities=21% Similarity=0.063 Sum_probs=24.7
Q ss_pred eEEEEE-cCCCCcHHHHHHHHhccccccccccceEEEEecCC
Q 038448 161 SVIPII-GTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSED 201 (385)
Q Consensus 161 ~vi~I~-G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~ 201 (385)
++|+|+ +-||+||||+|..+.... ...=..++-|.....
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~l--a~~g~~vlliD~D~~ 41 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATAL--SRSGYNIAVVDTDPQ 41 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHH--HHTTCCEEEEECCTT
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHH--HHCCCeEEEEECCCC
Confidence 578888 569999999998876542 121123455555443
No 456
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=90.61 E-value=0.14 Score=43.20 Aligned_cols=23 Identities=17% Similarity=0.013 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+|.|.|+.|+||||+++.+...
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~ 29 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEH 29 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHH
Confidence 58999999999999999999874
No 457
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=90.56 E-value=0.34 Score=42.75 Aligned_cols=26 Identities=19% Similarity=0.369 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSDV 184 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 184 (385)
....|.++|.+|+|||||...+....
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 34678899999999999999998753
No 458
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=90.54 E-value=0.16 Score=50.54 Aligned_cols=25 Identities=20% Similarity=0.108 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
...+|.+.|++|+||||+|+.+...
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~ 75 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEY 75 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 4578999999999999999998763
No 459
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=90.53 E-value=0.35 Score=42.53 Aligned_cols=26 Identities=15% Similarity=0.372 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSDV 184 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 184 (385)
....|+++|.+|+|||||...+....
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 44678999999999999999988653
No 460
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=90.50 E-value=0.23 Score=47.55 Aligned_cols=51 Identities=14% Similarity=0.129 Sum_probs=34.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCCCCHHHHHHHHHHHh
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSEDFDIIRVTKSILKSI 215 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l 215 (385)
.++.|.|.+|+||||||..+..+...+ =..++|++.-. +...+...++...
T Consensus 198 ~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlEm--s~~ql~~R~~~~~ 248 (444)
T 3bgw_A 198 NFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLEM--GKKENIKRLIVTA 248 (444)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSSS--CTTHHHHHHHHHH
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECCC--CHHHHHHHHHHHH
Confidence 688999999999999999887763222 12466776543 3445566555543
No 461
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=90.47 E-value=0.13 Score=48.76 Aligned_cols=21 Identities=24% Similarity=0.520 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcc
Q 038448 163 IPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 163 i~I~G~gGiGKTtLA~~v~~~ 183 (385)
|+|+|.+|+|||||...++..
T Consensus 34 I~lvG~sGaGKSTLln~L~g~ 54 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLT 54 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTC
T ss_pred EEEECCCCCcHHHHHHHHhCC
Confidence 599999999999999999864
No 462
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=90.46 E-value=0.1 Score=43.13 Aligned_cols=24 Identities=17% Similarity=0.158 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.--|.|+|.+|+|||||...+..+
T Consensus 22 ~~~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 22 KIRVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 456899999999999999998654
No 463
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=90.35 E-value=0.16 Score=48.97 Aligned_cols=22 Identities=23% Similarity=0.172 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
.+++|+|+.|.|||||.+.+..
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 7999999999999999988864
No 464
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=90.31 E-value=0.16 Score=44.37 Aligned_cols=26 Identities=12% Similarity=0.190 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhccc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSDV 184 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 184 (385)
..-.|+++|.+|+|||||...+....
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCC
Confidence 34568999999999999999987653
No 465
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=90.29 E-value=0.2 Score=46.76 Aligned_cols=42 Identities=19% Similarity=0.173 Sum_probs=28.1
Q ss_pred CCCCceEEEEEc-CCCCcHHHHHHHHhccccccccccceEEEEec
Q 038448 156 TDDGLSVIPIIG-TGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVS 199 (385)
Q Consensus 156 ~~~~~~vi~I~G-~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs 199 (385)
...+.++|+|+| -||+||||+|..+.... ...=..++.|...
T Consensus 139 ~~~~~kvIav~s~KGGvGKTT~a~nLA~~L--a~~g~rVlliD~D 181 (373)
T 3fkq_A 139 ENDKSSVVIFTSPCGGVGTSTVAAACAIAH--ANMGKKVFYLNIE 181 (373)
T ss_dssp CTTSCEEEEEECSSTTSSHHHHHHHHHHHH--HHHTCCEEEEECC
T ss_pred cCCCceEEEEECCCCCChHHHHHHHHHHHH--HhCCCCEEEEECC
Confidence 345679999996 79999999998776532 1211235566655
No 466
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=90.29 E-value=0.21 Score=39.94 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=19.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
..+..|+|+.|.||||+..+++-
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 36889999999999999988753
No 467
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=90.28 E-value=0.34 Score=47.11 Aligned_cols=54 Identities=7% Similarity=-0.018 Sum_probs=37.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCCCCHHHHHHHHHHHhh
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSEDFDIIRVTKSILKSIA 216 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~ 216 (385)
-.++.|.|.+|+||||||..+..+.... +=..++|++... +...+...++....
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~E~--s~~~l~~r~~~~~~ 295 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAMLEE--SVEETAEDLIGLHN 295 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEESSS--CHHHHHHHHHHHHT
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEeccC--CHHHHHHHHHHHHc
Confidence 3688999999999999999887653221 113567887644 46677777665544
No 468
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=90.25 E-value=0.15 Score=43.48 Aligned_cols=25 Identities=28% Similarity=0.320 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
..--|.|+|.+|+|||||...+.+.
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHC
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcC
Confidence 3456899999999999999998765
No 469
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=90.18 E-value=0.15 Score=50.15 Aligned_cols=23 Identities=39% Similarity=0.680 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+++|+|+.|+|||||++.++.-
T Consensus 295 ei~~i~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 295 EIIGILGPNGIGKTTFARILVGE 317 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999863
No 470
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=90.15 E-value=0.15 Score=48.69 Aligned_cols=23 Identities=13% Similarity=0.216 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+++|+|..|+|||||.+.+...
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 68999999999999999998764
No 471
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=90.07 E-value=0.22 Score=49.49 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
.+++|+|+.|.|||||++.+..
T Consensus 370 ~~~~ivG~sGsGKSTLl~~l~g 391 (582)
T 3b60_A 370 KTVALVGRSGSGKSTIASLITR 391 (582)
T ss_dssp CEEEEEECTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhh
Confidence 4689999999999999999976
No 472
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=90.06 E-value=0.17 Score=41.59 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
+-|.|.|.+|+||||||..+..
T Consensus 17 ~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4578999999999999998875
No 473
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=90.05 E-value=0.08 Score=47.98 Aligned_cols=23 Identities=17% Similarity=0.328 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+++|+|++|+|||||.+.+...
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC-
T ss_pred CEEEEECCCCCCHHHHHHHhccc
Confidence 58999999999999999999763
No 474
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=90.05 E-value=0.23 Score=49.28 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
.+++|+|+.|.|||||++.+..
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4789999999999999999976
No 475
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=90.05 E-value=0.2 Score=46.16 Aligned_cols=25 Identities=36% Similarity=0.407 Sum_probs=21.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhc
Q 038448 158 DGLSVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
...+++.+.|.||+||||+|..+..
T Consensus 16 ~~~~i~~~~gkGGvGKTt~a~~lA~ 40 (348)
T 3io3_A 16 DSLKWIFVGGKGGVGKTTTSSSVAV 40 (348)
T ss_dssp TTCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH
Confidence 3568999999999999999977654
No 476
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=90.01 E-value=0.16 Score=49.88 Aligned_cols=23 Identities=39% Similarity=0.559 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+++|+|+.|.|||||++.++.-
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl 335 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGV 335 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999874
No 477
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=89.89 E-value=0.16 Score=45.11 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
--|+|+|.+|+|||||...++..
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 45889999999999999987754
No 478
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=89.86 E-value=0.19 Score=44.28 Aligned_cols=24 Identities=21% Similarity=0.358 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
...|+++|.+|+|||||...+...
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC
Confidence 356899999999999999998764
No 479
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=89.79 E-value=0.17 Score=49.65 Aligned_cols=23 Identities=22% Similarity=0.585 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+++|+|+.|+|||||.+.+..-
T Consensus 26 ei~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 26 TILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 79999999999999999998763
No 480
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=89.72 E-value=0.17 Score=49.61 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
.+++|+|..|.|||||.+.+..
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~G 69 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAG 69 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 6899999999999999999875
No 481
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=89.71 E-value=0.15 Score=50.86 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
..+.|+|++|+||||||+.+..-
T Consensus 61 ~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 61 RHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHT
T ss_pred CEEEEEeCCCCCHHHHHHHHhcc
Confidence 47899999999999999999874
No 482
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=89.68 E-value=0.19 Score=43.00 Aligned_cols=23 Identities=39% Similarity=0.563 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
..|.+-|+.|+||||++..+.+.
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~ 28 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKK 28 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999875
No 483
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=89.68 E-value=0.42 Score=43.75 Aligned_cols=24 Identities=33% Similarity=0.289 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
..+++.+.|-||+||||+|..+..
T Consensus 15 ~~~i~~~sgkGGvGKTt~a~~lA~ 38 (334)
T 3iqw_A 15 SLRWIFVGGKGGVGKTTTSCSLAI 38 (334)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEEeCCCCccHHHHHHHHHH
Confidence 457888889999999999987764
No 484
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=89.65 E-value=1.3 Score=40.31 Aligned_cols=156 Identities=5% Similarity=-0.117 Sum_probs=88.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCCCCHHHHHHHHHHHhhcCCCCCccchHHh---hchhhHh
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSEDFDIIRVTKSILKSIASDQLVDDHDLNLL---QKYNDWT 236 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~l---~~~~~w~ 236 (385)
.++..++|..|.||++.+..+.... ....|+....+.+....+...+...+-.. ........-.++.. -..+.++
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-plf~~~kvvii~~~~~kl~~~~~~ 95 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVA-AAQGFEEHHTFSIDPNTDWNAIFSLCQAM-SLFASRQTLLLLLPENGPNAAINE 95 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHH-HHHTCCEEEEEECCTTCCHHHHHHHHHHH-HHCCSCEEEEEECCSSCCCTTHHH
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHH-HhCCCCeeEEEEecCCCCHHHHHHHhcCc-CCccCCeEEEEECCCCCCChHHHH
Confidence 4789999999999999998886642 12234322223344556777666554321 11111011111111 1335566
Q ss_pred hHhhhccCCCCCcEEEEEcCC-------hhHHhhcCC-CCcccCCCCChhhHHhhhhccccCCCCCCCCccHHHHHHHHH
Q 038448 237 NRSRLFEAGAPGSKIVFTTRN-------LGVAEKMGP-LPAYPLKELSNDDCLSVFSPHSLGEKDFSTHPSLKEIGEKIV 308 (385)
Q Consensus 237 ~l~~~l~~~~~gs~IivTTR~-------~~va~~~~~-~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~l~~~~~~i~ 308 (385)
.+...+....+++.+|++|.. ..+...+.. ...+...+++.++-...+...+-.. .. .--.+.+..++
T Consensus 96 aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~~~~-g~---~i~~~a~~~l~ 171 (343)
T 1jr3_D 96 QLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQL-NL---ELDDAANQVLC 171 (343)
T ss_dssp HHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHHHHT-TC---EECHHHHHHHH
T ss_pred HHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHHHHc-CC---CCCHHHHHHHH
Confidence 677777655567777766543 244444433 3567888998888776665543211 11 11135567788
Q ss_pred HHcCCChHHHHHH
Q 038448 309 KKCNGLPLVAKSL 321 (385)
Q Consensus 309 ~~c~glPLAi~~~ 321 (385)
+.++|.+..+...
T Consensus 172 ~~~~gdl~~~~~e 184 (343)
T 1jr3_D 172 YCYEGNLLALAQA 184 (343)
T ss_dssp HSSTTCHHHHHHH
T ss_pred HHhchHHHHHHHH
Confidence 8888887776654
No 485
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=89.56 E-value=0.54 Score=48.25 Aligned_cols=24 Identities=25% Similarity=0.239 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 160 LSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 160 ~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+-|.++|++|.|||.||+++.+.
T Consensus 511 ~~gvLl~GPPGtGKT~lAkaiA~e 534 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp CSCCEEESSTTSSHHHHHHHHHHT
T ss_pred CceEEEecCCCCCchHHHHHHHHH
Confidence 455789999999999999999985
No 486
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=89.54 E-value=0.22 Score=46.19 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=19.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHH
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLA 180 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v 180 (385)
...-|.|.|.||+||||+++++
T Consensus 32 ~~~killlG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 32 RLVKILLLGAGESGKSTFLKQM 53 (362)
T ss_dssp CCEEEEEECSTTSSHHHHHHHH
T ss_pred CccEEEEECCCCCcHHHHHHHH
Confidence 4567889999999999999875
No 487
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=89.50 E-value=0.21 Score=43.47 Aligned_cols=22 Identities=36% Similarity=0.440 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
.+|+|.|+.|+||||+|..+-.
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~ 23 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999988855
No 488
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=89.48 E-value=0.16 Score=44.01 Aligned_cols=40 Identities=23% Similarity=0.148 Sum_probs=25.2
Q ss_pred EEEEcCCCCcHHHHHHHHhccccccccccceEEEEecCCCCH
Q 038448 163 IPIIGTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSEDFDI 204 (385)
Q Consensus 163 i~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~ 204 (385)
|+|.|-||+||||+|..+....... . ..++-|......+.
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~-g-~~VlliD~D~~~~l 42 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASD-Y-DKIYAVDGDPDSCL 42 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTT-C-SCEEEEEECTTSCH
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHC-C-CeEEEEeCCCCcCh
Confidence 6668999999999998876542211 1 23455555444443
No 489
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=89.48 E-value=0.22 Score=43.49 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=18.3
Q ss_pred eEEEEEcC-CCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGT-GRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~-gGiGKTtLA~~v~~~ 183 (385)
++|+|+|. ||+||||+|..+..-
T Consensus 3 ~vi~v~s~kgGvGKTt~a~~LA~~ 26 (260)
T 3q9l_A 3 RIIVVTSGKGGVGKTTSSAAIATG 26 (260)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCcHHHHHHHHHHH
Confidence 57888764 899999999877653
No 490
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=89.40 E-value=0.19 Score=50.10 Aligned_cols=23 Identities=39% Similarity=0.559 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+++|+|+.|+|||||.+.+..-
T Consensus 383 ei~~i~G~NGsGKSTLlk~l~Gl 405 (607)
T 3bk7_A 383 EVIGIVGPNGIGKTTFVKMLAGV 405 (607)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999864
No 491
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=89.39 E-value=0.22 Score=42.81 Aligned_cols=23 Identities=22% Similarity=-0.003 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.++.|+|..|+||||++..+.+.
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r 35 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHR 35 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHH
Confidence 68899999999999999777654
No 492
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=89.31 E-value=0.19 Score=50.00 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.+++|+|+.|.|||||++.+..-
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl 401 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGA 401 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCcHHHHHHHHhcC
Confidence 35899999999999999999863
No 493
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=89.23 E-value=0.23 Score=42.09 Aligned_cols=41 Identities=17% Similarity=0.012 Sum_probs=26.2
Q ss_pred EEEEE-cCCCCcHHHHHHHHhccccccccccceEEEEecCCCCHH
Q 038448 162 VIPII-GTGRIGKTTLAQLAYSDVRVHNHFDLKAWTCVSEDFDII 205 (385)
Q Consensus 162 vi~I~-G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 205 (385)
+|+|+ +-||+||||+|..+..-. ...= .++-|......+..
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~l--a~~g-~VlliD~D~q~~~~ 43 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYL--ALQG-ETLLIDGDPNRSAT 43 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHH--HTTS-CEEEEEECTTCHHH
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHH--HhcC-CEEEEECCCCCCHH
Confidence 56675 669999999998887642 2222 45666665544443
No 494
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=89.23 E-value=0.085 Score=44.14 Aligned_cols=23 Identities=22% Similarity=0.501 Sum_probs=4.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
--|.|+|.+|+|||||...+...
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEC-----------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46889999999999999888765
No 495
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=89.18 E-value=0.21 Score=49.17 Aligned_cols=25 Identities=20% Similarity=0.154 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
...+|.+.|++|+||||+|+.+...
T Consensus 371 ~~~~I~l~G~~GsGKSTia~~La~~ 395 (546)
T 2gks_A 371 QGFCVWLTGLPCAGKSTIAEILATM 395 (546)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEccCCCCCCHHHHHHHHHHH
Confidence 3578999999999999999998763
No 496
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=89.12 E-value=0.2 Score=49.83 Aligned_cols=22 Identities=32% Similarity=0.545 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
.+++|+|+.|+|||||.+.+..
T Consensus 104 ei~~LvGpNGaGKSTLLkiL~G 125 (608)
T 3j16_B 104 QVLGLVGTNGIGKSTALKILAG 125 (608)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCChHHHHHHHHhc
Confidence 6899999999999999999875
No 497
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=89.01 E-value=0.17 Score=46.95 Aligned_cols=22 Identities=23% Similarity=0.496 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 038448 162 VIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 162 vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
-|+|+|.+|+|||||...++..
T Consensus 39 ~I~vvG~~g~GKSTLln~L~~~ 60 (361)
T 2qag_A 39 TLMVVGESGLGKSTLINSLFLT 60 (361)
T ss_dssp CEEECCCTTSCHHHHHHHHTTC
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 4689999999999999998764
No 498
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=89.00 E-value=0.22 Score=42.39 Aligned_cols=25 Identities=32% Similarity=0.312 Sum_probs=21.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhc
Q 038448 158 DGLSVIPIIGTGRIGKTTLAQLAYS 182 (385)
Q Consensus 158 ~~~~vi~I~G~gGiGKTtLA~~v~~ 182 (385)
...-.|+++|.-|+||||+++.+..
T Consensus 7 ~~~~~iglTGgigsGKStv~~~l~~ 31 (210)
T 4i1u_A 7 HHMYAIGLTGGIGSGKTTVADLFAA 31 (210)
T ss_dssp CSCCEEEEECCTTSCHHHHHHHHHH
T ss_pred cceeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999998754
No 499
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=88.94 E-value=0.19 Score=51.90 Aligned_cols=25 Identities=24% Similarity=0.240 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcc
Q 038448 159 GLSVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 159 ~~~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
....|.|+|.+|+||||||+.+.+.
T Consensus 237 ~~~~vLL~Gp~GtGKTtLarala~~ 261 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp CCCEEEECSCTTSSHHHHHHHHHHT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 3456899999999999999999874
No 500
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=88.89 E-value=0.23 Score=44.93 Aligned_cols=23 Identities=22% Similarity=0.537 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcc
Q 038448 161 SVIPIIGTGRIGKTTLAQLAYSD 183 (385)
Q Consensus 161 ~vi~I~G~gGiGKTtLA~~v~~~ 183 (385)
.-|.++|.+|+|||||...+...
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45789999999999999998765
Done!