BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038452
(438 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CYG|A Chain A, Crystal Structure At 1.45- Resolution Of The Major
Allergen Endo-Beta-1,3-Glucanase Of Banana As A
Molecular Basis For The Latex-Fruit Syndrome
Length = 312
Score = 199 bits (506), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 127/318 (39%), Positives = 189/318 (59%), Gaps = 24/318 (7%)
Query: 28 IGVNYGTIANNLPKPAEVANFLKTKTTIDI---------LRAFANTNISVTVSVGNGDIP 78
IGV YG + NNLP P+EV + K+ + L+A N+NI V + V D+
Sbjct: 1 IGVCYGMLGNNLPPPSEVVSLYKSNNIARMRLYDPNQAALQALRNSNIQVLLDVPRSDVQ 60
Query: 79 ALVQLP-AAKNWVAANIVPFYPSTKIIRVVVGNEIMQSANKDWIYNLVPAMKSINNALIE 137
+L P AA +W+ N+V ++PS + VGNE++ + D ++PAM++I NAL
Sbjct: 61 SLASNPSAAGDWIRRNVVAYWPSVSFRYIAVGNELIPGS--DLAQYILPAMRNIYNALSS 118
Query: 138 AGIKD-IKISTPNTLGFLGVSEPPSAGKFREGYDKDIIAPMLEFLRETKSAFMINPYPYF 196
AG+++ IK+ST G LG S PPSAG F + ++P+++FL + ++N YPYF
Sbjct: 119 AGLQNQIKVSTAVDTGVLGTSYPPSAGAFSSA-AQAYLSPIVQFLASNGAPLLVNVYPYF 177
Query: 197 NYADSISD----YILFKPNKGVYDPNTRITYSNMFDAQMDAVYSAMRALGYSDVPIVVAE 252
+Y + Y LF + GV + R +Y N+FDA +DAV++A+ +G ++V +VV+E
Sbjct: 178 SYTGNPGQISLPYALFTAS-GVVVQDGRFSYQNLFDAIVDAVFAALERVGGANVAVVVSE 236
Query: 253 TGWPSAGDPRESSATVDNAASFNWNLIQKVNSGKGTPLMPNKQFETYIFALFNENKKPGA 312
+GWPSAG E+S + NA ++N NLI+ V G GTP P K+ E YIF +FNEN+K G
Sbjct: 237 SGWPSAGGGAEASTS--NAQTYNQNLIRHV--GGGTPRRPGKEIEAYIFEMFNENQKAGG 292
Query: 313 TSERNFGLFKQDFTPVYD 330
E+NFGLF + PVY
Sbjct: 293 I-EQNFGLFYPNKQPVYQ 309
>pdb|3UR7|A Chain A, Higher-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR7|B Chain B, Higher-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR8|A Chain A, Lower-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR8|B Chain B, Lower-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
Length = 323
Score = 191 bits (485), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 124/324 (38%), Positives = 168/324 (51%), Gaps = 24/324 (7%)
Query: 28 IGVNYGTIANNLPKPAEV-----ANFLKTKTT----IDILRAFANTNISVTVSVGNGDIP 78
IGV YG IANNLP +V AN +K ++ A +NI + + V N D+
Sbjct: 3 IGVCYGKIANNLPSDQDVIKLYNANNIKKMRIYYPHTNVFNALKGSNIEIILDVPNQDLE 62
Query: 79 ALVQLPAAKNWVAANIVPFYPSTKIIRVVVGNEIMQSANKDWIYNLV-PAMKSINNALIE 137
AL A WV NI +P K + VGNE+ V PAM++I NAL
Sbjct: 63 ALANPSNANGWVQDNIRNHFPDVKFKYIAVGNEVDPGRESGKYARFVGPAMENIYNALSS 122
Query: 138 AGIKD-IKISTPNTLGFLGVSEPPSAGKFREGYDKDIIAPMLEFLRETKSAFMINPYPYF 196
AG+++ IK+ST G L + PP FRE Y K I P++ FL + N YPYF
Sbjct: 123 AGLQNQIKVSTSTYSGLLTNTYPPRDSIFREEY-KSFINPIIGFLARHNLPLLANIYPYF 181
Query: 197 NYADSIS----DYILFKPNKGVYDPNTRITYSNMFDAQMDAVYSAMRALGYSDVPIVVAE 252
+ D+ + Y LF + Y N+FDA +D++Y A LG ++ I+V+E
Sbjct: 182 GHIDNTNAVPLSYALFNQQR-----RNDTGYQNLFDALVDSMYFATEKLGGQNIEIIVSE 236
Query: 253 TGWPSAGDPRESSATVDNAASFNWNLIQKVNSGKGTPLMPNKQFETYIFALFNENKKPGA 312
+GWPS G P +AT+ NA ++ NLI V G GTP P K ETY+FA+F+EN+K G
Sbjct: 237 SGWPSEGHP---AATLKNARTYYTNLINHVKRGAGTPKKPGKTIETYLFAMFDENEKKGE 293
Query: 313 TSERNFGLFKQDFTPVYDAGVMLN 336
SE++FGLF D P Y LN
Sbjct: 294 ASEKHFGLFNPDQRPKYQLNFNLN 317
>pdb|1GHS|A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
pdb|1GHS|B Chain B, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
Length = 306
Score = 189 bits (479), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 122/317 (38%), Positives = 177/317 (55%), Gaps = 28/317 (8%)
Query: 28 IGVNYGTIANNLPKPAEVANFLKTKTTIDI---------LRAFANTNISVTVSVGNGDIP 78
IGV YG I NNLP ++V ++K + L A N+ I + + +GN +
Sbjct: 1 IGVCYGVIGNNLPSRSDVVQLYRSKGINGMRIYFADGQALSALRNSGIGLILDIGNDQLA 60
Query: 79 ALVQLPA-AKNWVAANIVPFYPSTKIIRVVVGNEIMQSANKDWIYNLVPAMKSINNALIE 137
+ + A +WV N+ P+YP+ I + GNE+ A + +++PAM+++N AL
Sbjct: 61 NIAASTSNAASWVQNNVRPYYPAVNIKYIAAGNEVQGGATQ----SILPAMRNLNAALSA 116
Query: 138 AGIKDIKISTPNTLGFLGVSEPPSAGKFREGYDKDIIAPMLEFLRETKSAFMINPYPYFN 197
AG+ IK+ST + S PPSAG F+ Y D+ L T + + N YPYF
Sbjct: 117 AGLGAIKVSTSIRFDEVANSFPPSAGVFKNAYMTDVA----RLLASTGAPLLANVYPYFA 172
Query: 198 YAD---SIS-DYILFKPNKGVYDPNTRITYSNMFDAQMDAVYSAMRALGYSDVPIVVAET 253
Y D SIS +Y F+P V D N +TY+++FDA +DAVY+A+ G V +VV+E+
Sbjct: 173 YRDNPGSISLNYATFQPGTTVRDQNNGLTYTSLFDAMVDAVYAALEKAGAPAVKVVVSES 232
Query: 254 GWPSAGDPRESSATVDNAASFNWNLIQKVNSGKGTPLMPNKQFETYIFALFNENKKPGAT 313
GWPSAG +A+ NA ++N LI V G GTP + ETYIFA+FNEN+K G
Sbjct: 233 GWPSAGG---FAASAGNARTYNQGLINHV--GGGTP-KKREALETYIFAMFNENQKTGDA 286
Query: 314 SERNFGLFKQDFTPVYD 330
+ER+FGLF D +P Y+
Sbjct: 287 TERSFGLFNPDKSPAYN 303
>pdb|4GZI|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In
Complex With Laminaratriose
pdb|4GZJ|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In
Complex With Laminaratriose And Laminaratetrose
Length = 323
Score = 189 bits (479), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 123/324 (37%), Positives = 167/324 (51%), Gaps = 24/324 (7%)
Query: 28 IGVNYGTIANNLPKPAEV-----ANFLKTKTT----IDILRAFANTNISVTVSVGNGDIP 78
IGV YG IANNLP +V AN +K ++ A +NI + + V N D+
Sbjct: 3 IGVCYGKIANNLPSDQDVIKLYNANNIKKMRIYYPHTNVFNALKGSNIEIILDVPNQDLE 62
Query: 79 ALVQLPAAKNWVAANIVPFYPSTKIIRVVVGNEIMQSANKDWIYNLV-PAMKSINNALIE 137
AL A WV NI +P K + VGNE+ V PAM++I NAL
Sbjct: 63 ALANPSNANGWVQDNIRNHFPDVKFKYIAVGNEVDPGRESGKYARFVGPAMENIYNALSS 122
Query: 138 AGIKD-IKISTPNTLGFLGVSEPPSAGKFREGYDKDIIAPMLEFLRETKSAFMINPYPYF 196
AG+++ IK+ST G L + PP FRE Y K I P++ FL + N YPYF
Sbjct: 123 AGLQNQIKVSTSTYSGLLTNTYPPRDSIFREEY-KSFINPIIGFLARHNLPLLANIYPYF 181
Query: 197 NYADSIS----DYILFKPNKGVYDPNTRITYSNMFDAQMDAVYSAMRALGYSDVPIVVAE 252
+ D+ + Y LF + Y N+FDA +D++Y A LG ++ I+V+
Sbjct: 182 GHIDNTNAVPLSYALFNQQR-----RNDTGYQNLFDALVDSMYFATEKLGGQNIEIIVSA 236
Query: 253 TGWPSAGDPRESSATVDNAASFNWNLIQKVNSGKGTPLMPNKQFETYIFALFNENKKPGA 312
+GWPS G P +AT+ NA ++ NLI V G GTP P K ETY+FA+F+EN+K G
Sbjct: 237 SGWPSEGHP---AATLKNARTYYTNLINHVKRGAGTPKKPGKTIETYLFAMFDENEKKGE 293
Query: 313 TSERNFGLFKQDFTPVYDAGVMLN 336
SE++FGLF D P Y LN
Sbjct: 294 ASEKHFGLFNPDQRPKYQLNFNLN 317
>pdb|3EM5|A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|B Chain B, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|C Chain C, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|D Chain D, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3F55|A Chain A, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|B Chain B, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|C Chain C, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|D Chain D, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
Length = 316
Score = 184 bits (467), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 122/311 (39%), Positives = 175/311 (56%), Gaps = 26/311 (8%)
Query: 28 IGVNYGTIANNLPKPAEVANFLK----TKTTI-----DILRAFANTNISVTVSVGNGDIP 78
+GV YG NNLP +EV K T+ I +L A +NI + + V N D+
Sbjct: 2 VGVCYGMQGNNLPPVSEVIALYKKSNITRMRIYDPNQAVLEALRGSNIELILGVPNSDLQ 61
Query: 79 ALVQLPAAKNWVAANIVPFYPSTKIIRVVVGNEIM-QSANKDWIYNLV-PAMKSINNALI 136
+L AK+WV N+ F+ S + + VGNEI + W+ V PAM++I++A+
Sbjct: 62 SLTNPSNAKSWVQKNVRGFWSSVRFRYIAVGNEISPVNRGTAWLAQFVLPAMRNIHDAIR 121
Query: 137 EAGIKD-IKISTPNTLGFLGVSEPPSAGKFREGYDKDIIAPMLEFLRETKSAFMINPYPY 195
AG++D IK+ST L +G S PPSAG FR+ + + P++ FL +S + N YPY
Sbjct: 122 SAGLQDQIKVSTAIDLTLVGNSYPPSAGAFRDDV-RSYLNPIIRFLSSIRSPLLANIYPY 180
Query: 196 FNYADSISD----YILF-KPNKGVYDPNTRITYSNMFDAQMDAVYSAMRALGYSDVPIVV 250
F YA + D Y LF P+ V+D Y N+FDA +DA+YSA+ + +VV
Sbjct: 181 FTYAGNPRDISLPYALFTSPSVVVWDGQR--GYKNLFDATLDALYSALERASGGSLEVVV 238
Query: 251 AETGWPSAGDPRESSATVDNAASFNWNLIQKVNSGKGTPLMPNKQFETYIFALFNENKKP 310
+E+GWPSAG +AT DN ++ NLIQ V +GTP P + ETY+FA+F+ENKK
Sbjct: 239 SESGWPSAG---AFAATFDNGRTYLSNLIQHVK--RGTPKRPKRAIETYLFAMFDENKKQ 293
Query: 311 GATSERNFGLF 321
E++FGLF
Sbjct: 294 PEV-EKHFGLF 303
>pdb|1AQ0|A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group
pdb|1AQ0|B Chain B, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group
pdb|1GHR|A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
Length = 306
Score = 172 bits (437), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 125/316 (39%), Positives = 168/316 (53%), Gaps = 28/316 (8%)
Query: 28 IGVNYGTIANNLPKPAEVANFLKTKTTIDI---------LRAFANTNISVTVSVGNGDIP 78
IGV YG ANNLP + V + K+ + L+A T I+V V N +
Sbjct: 1 IGVCYGMSANNLPAASTVVSMFKSNGIKSMRLYAPNQAALQAVGGTGINVVVGAPNDVLS 60
Query: 79 ALVQLPAAKN-WVAANIVPFYPSTKIIRVVVGNEIMQSANKDWIYNLVPAMKSINNALIE 137
L PAA WV +NI YP V VGNE+ A + NLVPAMK+++ AL+
Sbjct: 61 NLAASPAAAASWVKSNIQA-YPKVSFRYVCVGNEVAGGATR----NLVPAMKNVHGALVA 115
Query: 138 AGIKDIKISTPNTLGFLGVSEPPSAGKFREGYDKDIIAPMLEFLRETKSAFMINPYPYFN 197
AG+ IK++T + LGV PPSAG F G + P+++FL T + M N YPY
Sbjct: 116 AGLGHIKVTTSVSQAILGVFSPPSAGSF-TGEAAAFMGPVVQFLARTNAPLMANIYPYLA 174
Query: 198 YADSIS----DYILFKPNKGVYDPNTRITYSNMFDAQMDAVYSAMRALGYSDVPIVVAET 253
+A + S Y LF + G + Y N+FD +DA Y+AM G S V +VV+E+
Sbjct: 175 WAYNPSAMDMGYALFNAS-GTVVRDGAYGYQNLFDTTVDAFYTAMGKHGGSSVKLVVSES 233
Query: 254 GWPSAGDPRESSATVDNAASFNWNLIQKVNSGKGTPLMPNKQFETYIFALFNENKKPGAT 313
GWPS G ++AT NA +N +LI V G+GTP P ETYIFA+FNEN+K
Sbjct: 234 GWPSGGG---TAATPANARFYNQHLINHV--GRGTPRHPGA-IETYIFAMFNENQKDSGV 287
Query: 314 SERNFGLFKQDFTPVY 329
E+N+GLF + VY
Sbjct: 288 -EQNWGLFYPNMQHVY 302
>pdb|2JON|A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9
Length = 101
Score = 112 bits (280), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 54/95 (56%), Positives = 65/95 (68%), Gaps = 4/95 (4%)
Query: 346 PQPTDK---KFCVPRPNTNPQSLQGNLDWVCSQGIDCAPIQPGGSCFEPNTLWSHAQYAM 402
P PT K +CVP+P + L GN+++ CSQGIDC PIQPGG+CFEPNT+ +HA Y M
Sbjct: 3 PTPTPKAAGSWCVPKPGVSDDQLTGNINYACSQGIDCGPIQPGGACFEPNTVKAHAAYVM 62
Query: 403 NAYYALKGRRDDNDCDFKQTALLTTNNPSYGSCVY 437
N YY GR N CDF QTA LT NPSYG+C +
Sbjct: 63 NLYYQHAGRNSWN-CDFSQTATLTNTNPSYGACNF 96
>pdb|3HKO|A Chain A, Crystal Structure Of A Cdpk Kinase Domain From
Cryptosporidium Parvum, Cgd7_40
Length = 345
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 192 PYPYFNYADSISDYILFK-----PNKGVYDPNTRITYSNMFDAQMDAVYSAMRALGY 243
P+P N AD+IS + K PN V P R SN+ + +D + AMRAL +
Sbjct: 275 PFPGVNDADTISQVLNKKLCFENPNYNVLSPLARDLLSNLLNRNVDERFDAMRALQH 331
>pdb|3OYO|A Chain A, Crystal Structure Of Hemopexin Fold Protein Cp4 From Cow
Pea
pdb|3OYO|B Chain B, Crystal Structure Of Hemopexin Fold Protein Cp4 From Cow
Pea
Length = 225
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 283 NSGKGTPLMPNKQFETYIFALFNENKKPGATSERNFGLFKQDFTP 327
N G G P++ +FE+ I A F +K+P A + + DFTP
Sbjct: 154 NIGDGFPVLNGTEFESGIDACFASHKEPEAYLFKGQNYVRIDFTP 198
>pdb|3N6Q|A Chain A, Crystal Structure Of Yghz From E. Coli
pdb|3N6Q|B Chain B, Crystal Structure Of Yghz From E. Coli
pdb|3N6Q|C Chain C, Crystal Structure Of Yghz From E. Coli
pdb|3N6Q|D Chain D, Crystal Structure Of Yghz From E. Coli
pdb|3N6Q|E Chain E, Crystal Structure Of Yghz From E. Coli
pdb|3N6Q|F Chain F, Crystal Structure Of Yghz From E. Coli
pdb|3N6Q|G Chain G, Crystal Structure Of Yghz From E. Coli
pdb|3N6Q|H Chain H, Crystal Structure Of Yghz From E. Coli
pdb|4AST|A Chain A, The Apo Structure Of A Bacterial Aldo-Keto Reductase
Akr14a1
pdb|4AST|B Chain B, The Apo Structure Of A Bacterial Aldo-Keto Reductase
Akr14a1
pdb|4AST|C Chain C, The Apo Structure Of A Bacterial Aldo-Keto Reductase
Akr14a1
pdb|4AST|D Chain D, The Apo Structure Of A Bacterial Aldo-Keto Reductase
Akr14a1
pdb|4AST|E Chain E, The Apo Structure Of A Bacterial Aldo-Keto Reductase
Akr14a1
pdb|4AST|F Chain F, The Apo Structure Of A Bacterial Aldo-Keto Reductase
Akr14a1
pdb|4AST|G Chain G, The Apo Structure Of A Bacterial Aldo-Keto Reductase
Akr14a1
pdb|4AST|H Chain H, The Apo Structure Of A Bacterial Aldo-Keto Reductase
Akr14a1
Length = 346
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Query: 276 WNLIQKVNSGKGTPLMPNKQFETYI--FALFNENKKPGATSERNFG-LFKQDFTPVYDAG 332
W+ VN+ + + K F+ I F L N P ++E NFG L ++DF D
Sbjct: 33 WHNFGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDFAAYRDEL 92
Query: 333 VMLNGAGAKTQPQP 346
++ AG P P
Sbjct: 93 IISTKAGYDMWPGP 106
>pdb|4AUB|A Chain A, The Complex Structure Of The Bacterial Aldo-Keto Reductase
Akr14a1 With Nadp And Citrate
pdb|4AUB|B Chain B, The Complex Structure Of The Bacterial Aldo-Keto Reductase
Akr14a1 With Nadp And Citrate
pdb|4AUB|C Chain C, The Complex Structure Of The Bacterial Aldo-Keto Reductase
Akr14a1 With Nadp And Citrate
pdb|4AUB|D Chain D, The Complex Structure Of The Bacterial Aldo-Keto Reductase
Akr14a1 With Nadp And Citrate
pdb|4AUB|E Chain E, The Complex Structure Of The Bacterial Aldo-Keto Reductase
Akr14a1 With Nadp And Citrate
pdb|4AUB|F Chain F, The Complex Structure Of The Bacterial Aldo-Keto Reductase
Akr14a1 With Nadp And Citrate
pdb|4AUB|G Chain G, The Complex Structure Of The Bacterial Aldo-Keto Reductase
Akr14a1 With Nadp And Citrate
pdb|4AUB|H Chain H, The Complex Structure Of The Bacterial Aldo-Keto Reductase
Akr14a1 With Nadp And Citrate
Length = 366
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Query: 276 WNLIQKVNSGKGTPLMPNKQFETYI--FALFNENKKPGATSERNFG-LFKQDFTPVYDAG 332
W+ VN+ + + K F+ I F L N P ++E NFG L ++DF D
Sbjct: 53 WHNFGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDFAAYRDEL 112
Query: 333 VMLNGAGAKTQPQP 346
++ AG P P
Sbjct: 113 IISTKAGYDMWPGP 126
>pdb|1JT2|A Chain A, Structural Basis For The Substrate Specificity Of The
Ferul Domain Of The Cellulosomal Xylanase Z From C.
Thermocellum
Length = 268
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 46/125 (36%), Gaps = 16/125 (12%)
Query: 64 TNISVTVSVGNGDIPALVQLPAAKNWVAANIVPFYPSTKIIRVVVGNEIMQSANKDWIYN 123
NIS + N PA V LP P Y K V+ + + DW
Sbjct: 33 VNISYFSTATNSTRPARVYLP-----------PGYSKDKKYSVLYLLHGIGGSENDWFEG 81
Query: 124 LVPAMKSINNALIEAGIKDIKISTPNTLGFLGVSEPPSAGKFREGYDKDIIAPMLEFLRE 183
A +N + E IK + I TPNT + P E + KD++ ++ ++
Sbjct: 82 GGRANVIADNLIAEGKIKPLIIVTPNT-----NAAGPGIADGYENFTKDLLNSLIPYIES 136
Query: 184 TKSAF 188
S +
Sbjct: 137 NYSVY 141
>pdb|1JJF|A Chain A, Structural Basis For The Substrate Specificity Of The
Feruloyl Esterase Domain Of The Cellulosomal Xylanase Z
Of Clostridium Thermocellum
Length = 268
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 46/125 (36%), Gaps = 16/125 (12%)
Query: 64 TNISVTVSVGNGDIPALVQLPAAKNWVAANIVPFYPSTKIIRVVVGNEIMQSANKDWIYN 123
NIS + N PA V LP P Y K V+ + + DW
Sbjct: 33 VNISYFSTATNSTRPARVYLP-----------PGYSKDKKYSVLYLLHGIGGSENDWFEG 81
Query: 124 LVPAMKSINNALIEAGIKDIKISTPNTLGFLGVSEPPSAGKFREGYDKDIIAPMLEFLRE 183
A +N + E IK + I TPNT + P E + KD++ ++ ++
Sbjct: 82 GGRANVIADNLIAEGKIKPLIIVTPNT-----NAAGPGIADGYENFTKDLLNSLIPYIES 136
Query: 184 TKSAF 188
S +
Sbjct: 137 NYSVY 141
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,641,337
Number of Sequences: 62578
Number of extensions: 586181
Number of successful extensions: 1110
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1063
Number of HSP's gapped (non-prelim): 14
length of query: 438
length of database: 14,973,337
effective HSP length: 102
effective length of query: 336
effective length of database: 8,590,381
effective search space: 2886368016
effective search space used: 2886368016
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)