Query 038454
Match_columns 359
No_of_seqs 349 out of 2632
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 11:14:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038454.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038454hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 3.7E-53 8E-58 429.8 30.3 351 2-359 24-434 (889)
2 PF00931 NB-ARC: NB-ARC domain 100.0 5E-43 1.1E-47 320.2 16.6 241 116-359 3-273 (287)
3 PLN03210 Resistant to P. syrin 100.0 1.8E-33 3.9E-38 298.9 24.3 232 106-354 183-455 (1153)
4 PRK04841 transcriptional regul 99.5 4.4E-12 9.6E-17 133.7 22.9 220 102-349 9-279 (903)
5 TIGR03015 pepcterm_ATPase puta 99.4 1.5E-10 3.2E-15 104.8 23.1 160 127-291 40-242 (269)
6 PRK00411 cdc6 cell division co 99.4 3.3E-10 7.1E-15 108.3 24.3 197 105-307 28-282 (394)
7 PF01637 Arch_ATPase: Archaeal 99.3 7.8E-12 1.7E-16 110.2 11.7 170 109-286 1-233 (234)
8 TIGR02928 orc1/cdc6 family rep 99.3 1.1E-09 2.4E-14 103.5 24.4 178 106-285 14-244 (365)
9 COG2909 MalT ATP-dependent tra 99.2 1.7E-09 3.6E-14 107.3 21.8 221 102-349 14-285 (894)
10 PF05729 NACHT: NACHT domain 99.2 4E-10 8.7E-15 93.8 11.3 118 131-255 1-163 (166)
11 TIGR00635 ruvB Holliday juncti 99.0 3.4E-09 7.4E-14 97.7 13.8 170 107-290 4-204 (305)
12 PRK00080 ruvB Holliday junctio 99.0 5E-09 1.1E-13 97.5 14.6 172 106-290 24-225 (328)
13 PRK13342 recombination factor 99.0 3.6E-08 7.8E-13 94.6 18.0 158 106-290 11-199 (413)
14 COG2256 MGS1 ATPase related to 98.9 1.2E-07 2.6E-12 87.1 18.6 201 107-332 24-263 (436)
15 PRK06893 DNA replication initi 98.9 3.9E-08 8.5E-13 86.7 15.2 153 107-291 16-207 (229)
16 COG3903 Predicted ATPase [Gene 98.9 6.3E-09 1.4E-13 95.8 9.0 214 130-353 14-257 (414)
17 TIGR03420 DnaA_homol_Hda DnaA 98.9 8.8E-08 1.9E-12 84.2 14.7 151 108-290 16-204 (226)
18 COG1474 CDC6 Cdc6-related prot 98.8 4.9E-07 1.1E-11 84.7 20.3 178 106-287 16-238 (366)
19 PF13401 AAA_22: AAA domain; P 98.8 8.8E-09 1.9E-13 82.4 7.2 91 130-220 4-96 (131)
20 PTZ00112 origin recognition co 98.8 3E-07 6.6E-12 92.4 16.9 184 106-291 754-986 (1164)
21 PRK08727 hypothetical protein; 98.8 3.3E-07 7.2E-12 81.0 15.3 145 107-284 19-201 (233)
22 PRK12402 replication factor C 98.8 4.3E-07 9.4E-12 84.8 16.9 176 106-288 14-227 (337)
23 COG3899 Predicted ATPase [Gene 98.7 2.4E-07 5.2E-12 96.0 15.8 234 108-353 1-326 (849)
24 cd01128 rho_factor Transcripti 98.7 3.1E-08 6.6E-13 87.9 7.8 90 129-220 15-112 (249)
25 KOG2028 ATPase related to the 98.7 2.8E-07 6.1E-12 83.5 13.6 142 120-282 152-331 (554)
26 PRK08084 DNA replication initi 98.7 6.8E-07 1.5E-11 79.1 15.1 149 108-289 24-211 (235)
27 PRK14949 DNA polymerase III su 98.7 6.6E-07 1.4E-11 90.9 16.7 157 106-287 15-220 (944)
28 PF05496 RuvB_N: Holliday junc 98.7 7.9E-07 1.7E-11 76.4 14.6 174 106-292 23-226 (233)
29 PRK07003 DNA polymerase III su 98.7 1.1E-06 2.3E-11 87.9 17.3 157 106-286 15-220 (830)
30 PRK14961 DNA polymerase III su 98.7 1.7E-06 3.7E-11 81.6 17.8 153 106-286 15-219 (363)
31 PF05621 TniB: Bacterial TniB 98.7 3.8E-06 8.2E-11 75.5 18.8 182 106-287 33-261 (302)
32 PLN03025 replication factor C 98.6 1.3E-06 2.8E-11 81.0 15.9 158 106-285 12-198 (319)
33 PTZ00202 tuzin; Provisional 98.6 6E-07 1.3E-11 84.1 13.1 143 99-254 254-433 (550)
34 PF13191 AAA_16: AAA ATPase do 98.6 8.2E-08 1.8E-12 81.5 7.0 45 108-154 1-48 (185)
35 PRK14960 DNA polymerase III su 98.6 1.8E-06 3.8E-11 85.4 16.8 167 106-286 14-218 (702)
36 PRK09112 DNA polymerase III su 98.6 1.7E-06 3.6E-11 80.8 15.9 176 102-288 18-241 (351)
37 PRK05564 DNA polymerase III su 98.6 2.8E-06 6E-11 78.6 17.1 152 107-285 4-188 (313)
38 PRK00440 rfc replication facto 98.6 2.4E-06 5.1E-11 79.2 16.7 157 106-286 16-202 (319)
39 PF00308 Bac_DnaA: Bacterial d 98.6 2.6E-06 5.6E-11 74.5 15.8 157 109-286 11-207 (219)
40 PRK12323 DNA polymerase III su 98.6 1.1E-06 2.4E-11 86.5 14.7 173 106-287 15-225 (700)
41 PRK07471 DNA polymerase III su 98.6 4.1E-06 8.9E-11 78.7 18.0 173 103-288 15-239 (365)
42 PRK04195 replication factor C 98.6 1.9E-06 4.1E-11 84.4 16.4 159 106-291 13-206 (482)
43 PRK09376 rho transcription ter 98.6 1.4E-07 3E-12 87.7 7.8 89 130-220 169-265 (416)
44 PRK14963 DNA polymerase III su 98.6 3E-07 6.5E-12 89.8 10.6 170 106-285 13-215 (504)
45 PRK09087 hypothetical protein; 98.6 2.6E-06 5.6E-11 74.8 15.2 118 130-288 44-196 (226)
46 PRK14956 DNA polymerase III su 98.6 1.3E-06 2.8E-11 83.8 13.8 171 106-285 17-220 (484)
47 PRK07940 DNA polymerase III su 98.6 2.9E-06 6.4E-11 80.3 16.2 150 107-287 5-213 (394)
48 PRK13341 recombination factor 98.6 1.5E-06 3.3E-11 88.1 15.0 152 106-284 27-214 (725)
49 PRK14087 dnaA chromosomal repl 98.5 4.6E-06 9.9E-11 80.7 16.8 182 109-307 118-348 (450)
50 PF13173 AAA_14: AAA domain 98.5 6.9E-07 1.5E-11 71.3 9.1 95 130-246 2-126 (128)
51 PF14516 AAA_35: AAA-like doma 98.5 1.6E-05 3.4E-10 74.0 19.6 178 104-294 8-246 (331)
52 PRK14957 DNA polymerase III su 98.5 6.9E-06 1.5E-10 80.7 17.8 158 106-287 15-221 (546)
53 PRK14964 DNA polymerase III su 98.5 6.5E-06 1.4E-10 79.7 17.2 158 106-286 12-216 (491)
54 PRK14951 DNA polymerase III su 98.5 4.1E-06 8.8E-11 83.4 16.1 172 106-287 15-225 (618)
55 PRK07994 DNA polymerase III su 98.5 5.5E-06 1.2E-10 82.7 16.9 168 106-287 15-220 (647)
56 TIGR00767 rho transcription te 98.5 4E-07 8.7E-12 85.0 8.0 89 130-220 168-264 (415)
57 PRK05642 DNA replication initi 98.5 7.9E-06 1.7E-10 72.2 15.8 128 130-289 45-210 (234)
58 PRK14962 DNA polymerase III su 98.5 1.1E-05 2.5E-10 78.2 17.9 162 106-290 13-222 (472)
59 PRK14958 DNA polymerase III su 98.5 5.4E-06 1.2E-10 81.2 15.7 157 106-286 15-219 (509)
60 PRK08691 DNA polymerase III su 98.5 5.5E-06 1.2E-10 82.6 15.7 158 106-288 15-221 (709)
61 TIGR03345 VI_ClpV1 type VI sec 98.5 3.8E-06 8.2E-11 87.2 15.3 158 107-280 187-389 (852)
62 PRK08903 DnaA regulatory inact 98.5 7.1E-06 1.5E-10 72.2 15.0 148 107-291 18-203 (227)
63 PRK06645 DNA polymerase III su 98.4 1.6E-05 3.4E-10 77.6 18.2 167 106-284 20-226 (507)
64 TIGR00678 holB DNA polymerase 98.4 1.1E-05 2.3E-10 68.9 15.3 137 120-283 3-187 (188)
65 PRK05896 DNA polymerase III su 98.4 8.5E-06 1.8E-10 80.3 16.4 168 106-288 15-222 (605)
66 cd00009 AAA The AAA+ (ATPases 98.4 1.7E-06 3.7E-11 69.8 9.8 57 111-172 2-58 (151)
67 TIGR02639 ClpA ATP-dependent C 98.4 4E-06 8.7E-11 86.2 14.5 134 107-255 182-358 (731)
68 CHL00095 clpC Clp protease ATP 98.4 3.9E-06 8.5E-11 87.3 13.2 133 107-254 179-353 (821)
69 PRK14088 dnaA chromosomal repl 98.4 3.1E-05 6.7E-10 74.8 18.5 178 109-307 108-332 (440)
70 TIGR00362 DnaA chromosomal rep 98.4 2.6E-05 5.5E-10 74.9 17.8 177 109-307 113-337 (405)
71 PRK14970 DNA polymerase III su 98.4 2.8E-05 6.1E-10 73.6 17.5 156 106-284 16-206 (367)
72 TIGR02397 dnaX_nterm DNA polym 98.4 4.1E-05 8.8E-10 72.1 18.3 159 106-288 13-219 (355)
73 PRK14955 DNA polymerase III su 98.3 1.2E-05 2.6E-10 76.7 14.7 175 106-286 15-227 (397)
74 PRK00149 dnaA chromosomal repl 98.3 3.1E-05 6.8E-10 75.3 17.7 176 109-307 125-349 (450)
75 PRK09111 DNA polymerase III su 98.3 2.8E-05 6E-10 77.5 17.6 172 106-288 23-234 (598)
76 PRK06620 hypothetical protein; 98.3 2.5E-05 5.5E-10 67.9 14.9 137 105-284 15-186 (214)
77 PRK14969 DNA polymerase III su 98.3 2.2E-05 4.7E-10 77.5 15.7 156 106-284 15-217 (527)
78 TIGR02903 spore_lon_C ATP-depe 98.3 2.2E-05 4.7E-10 78.9 15.8 178 106-290 153-398 (615)
79 PRK14952 DNA polymerase III su 98.3 5.4E-05 1.2E-09 75.1 18.1 163 106-282 12-214 (584)
80 PRK07764 DNA polymerase III su 98.3 3.2E-05 7E-10 79.6 16.9 150 106-284 14-218 (824)
81 TIGR01242 26Sp45 26S proteasom 98.3 5.4E-06 1.2E-10 78.4 10.3 148 106-281 121-328 (364)
82 PRK11034 clpA ATP-dependent Cl 98.3 2.4E-05 5.3E-10 79.9 15.5 134 107-255 186-362 (758)
83 PRK14959 DNA polymerase III su 98.3 3.8E-05 8.2E-10 76.2 16.3 172 106-291 15-225 (624)
84 PRK14086 dnaA chromosomal repl 98.3 0.00024 5.2E-09 70.3 21.5 157 131-308 315-516 (617)
85 PRK08451 DNA polymerase III su 98.3 8E-05 1.7E-09 72.9 18.1 159 106-287 13-218 (535)
86 PRK14950 DNA polymerase III su 98.2 2.3E-05 4.9E-10 78.6 14.1 169 106-287 15-221 (585)
87 PRK11331 5-methylcytosine-spec 98.2 6.4E-06 1.4E-10 78.3 9.3 69 107-180 175-243 (459)
88 PRK03992 proteasome-activating 98.2 3.4E-05 7.3E-10 73.5 14.1 45 107-153 131-188 (389)
89 PHA02544 44 clamp loader, smal 98.2 8.5E-05 1.8E-09 68.8 16.3 47 105-153 19-66 (316)
90 PRK06305 DNA polymerase III su 98.2 7.7E-05 1.7E-09 72.2 16.3 154 106-283 16-218 (451)
91 KOG2543 Origin recognition com 98.2 7.1E-05 1.5E-09 68.7 14.8 175 106-290 5-229 (438)
92 PRK07133 DNA polymerase III su 98.2 9.3E-05 2E-09 74.6 17.2 163 106-284 17-216 (725)
93 PRK14971 DNA polymerase III su 98.2 9.9E-05 2.2E-09 74.0 17.4 155 106-284 16-219 (614)
94 PRK14954 DNA polymerase III su 98.2 9.7E-05 2.1E-09 73.9 17.0 170 106-283 15-224 (620)
95 PRK14953 DNA polymerase III su 98.2 0.00016 3.5E-09 70.6 18.0 156 106-288 15-221 (486)
96 PRK12422 chromosomal replicati 98.2 0.00073 1.6E-08 65.3 22.3 154 131-307 142-343 (445)
97 COG3267 ExeA Type II secretory 98.1 0.00042 9.1E-09 60.5 18.3 158 126-290 47-248 (269)
98 TIGR03346 chaperone_ClpB ATP-d 98.1 7.2E-05 1.6E-09 78.2 15.5 134 107-255 173-349 (852)
99 KOG2227 Pre-initiation complex 98.1 0.00022 4.8E-09 67.2 16.8 172 104-280 147-361 (529)
100 PRK06647 DNA polymerase III su 98.1 0.00021 4.6E-09 70.9 17.7 165 106-287 15-220 (563)
101 KOG0989 Replication factor C, 98.1 4E-05 8.7E-10 68.3 11.1 159 106-281 35-224 (346)
102 PRK07399 DNA polymerase III su 98.1 0.00031 6.8E-09 64.7 16.8 173 107-288 4-222 (314)
103 PRK14965 DNA polymerase III su 98.0 0.00022 4.7E-09 71.3 16.6 168 106-287 15-221 (576)
104 TIGR02880 cbbX_cfxQ probable R 98.0 8.3E-05 1.8E-09 67.7 12.5 46 108-153 23-81 (284)
105 TIGR02881 spore_V_K stage V sp 98.0 7.8E-05 1.7E-09 67.1 12.2 46 108-153 7-65 (261)
106 PRK10865 protein disaggregatio 98.0 5.9E-05 1.3E-09 78.7 12.6 46 107-154 178-223 (857)
107 PRK14948 DNA polymerase III su 98.0 0.00044 9.4E-09 69.5 18.1 170 106-287 15-222 (620)
108 PTZ00361 26 proteosome regulat 98.0 7.4E-05 1.6E-09 71.7 11.4 25 129-153 216-240 (438)
109 PRK05563 DNA polymerase III su 98.0 0.00061 1.3E-08 67.8 18.1 166 106-285 15-218 (559)
110 smart00382 AAA ATPases associa 98.0 5E-05 1.1E-09 60.5 8.7 85 131-220 3-87 (148)
111 CHL00181 cbbX CbbX; Provisiona 98.0 0.00017 3.6E-09 65.7 13.0 46 108-153 24-82 (287)
112 PRK05707 DNA polymerase III su 98.0 0.00032 6.9E-09 65.0 15.0 57 224-287 138-203 (328)
113 COG1222 RPT1 ATP-dependent 26S 97.9 0.00055 1.2E-08 62.5 15.9 154 129-308 184-393 (406)
114 PF05673 DUF815: Protein of un 97.9 0.00067 1.5E-08 59.3 15.5 51 102-154 22-76 (249)
115 PRK08116 hypothetical protein; 97.9 5.1E-05 1.1E-09 68.4 8.9 73 131-220 115-187 (268)
116 PTZ00454 26S protease regulato 97.9 0.00012 2.7E-09 69.5 11.5 25 129-153 178-202 (398)
117 TIGR03689 pup_AAA proteasome A 97.9 0.00014 3E-09 70.9 11.9 26 129-154 215-240 (512)
118 COG0593 DnaA ATPase involved i 97.9 0.00056 1.2E-08 64.5 15.3 178 108-309 89-315 (408)
119 PRK08118 topology modulation p 97.9 8.7E-06 1.9E-10 68.0 2.7 36 131-166 2-37 (167)
120 PF10443 RNA12: RNA12 protein; 97.9 0.0038 8.2E-08 58.9 20.2 175 116-297 3-288 (431)
121 PRK12377 putative replication 97.8 3.1E-05 6.7E-10 68.7 6.0 72 130-220 101-172 (248)
122 PRK08181 transposase; Validate 97.8 0.00042 9.1E-09 62.3 13.3 76 123-220 101-176 (269)
123 COG2255 RuvB Holliday junction 97.8 0.0016 3.4E-08 57.9 15.8 93 236-331 175-275 (332)
124 KOG0991 Replication factor C, 97.8 0.00037 8.1E-09 59.9 11.6 47 106-154 26-72 (333)
125 PRK06835 DNA replication prote 97.8 0.00068 1.5E-08 62.8 14.3 36 131-169 184-219 (329)
126 PF04665 Pox_A32: Poxvirus A32 97.8 5.2E-05 1.1E-09 66.5 6.6 36 131-169 14-49 (241)
127 PRK08769 DNA polymerase III su 97.8 0.0017 3.7E-08 59.9 16.7 156 117-288 12-209 (319)
128 CHL00176 ftsH cell division pr 97.8 0.00063 1.4E-08 68.5 15.0 47 107-153 183-239 (638)
129 TIGR01241 FtsH_fam ATP-depende 97.8 0.00078 1.7E-08 66.4 15.5 47 107-153 55-111 (495)
130 PF00004 AAA: ATPase family as 97.8 5E-05 1.1E-09 60.3 5.9 21 133-153 1-21 (132)
131 PRK07261 topology modulation p 97.8 9.5E-05 2.1E-09 62.0 7.5 35 132-166 2-36 (171)
132 PRK06526 transposase; Provisio 97.8 0.00033 7.2E-09 62.5 11.2 24 130-153 98-121 (254)
133 PHA00729 NTP-binding motif con 97.7 0.00017 3.7E-09 62.6 8.5 34 120-153 7-40 (226)
134 PRK12608 transcription termina 97.7 0.00023 5E-09 66.3 9.8 102 117-220 119-229 (380)
135 TIGR00763 lon ATP-dependent pr 97.7 0.0029 6.2E-08 65.8 18.7 46 106-153 319-370 (775)
136 TIGR02237 recomb_radB DNA repa 97.7 0.00016 3.5E-09 62.7 8.2 86 130-220 12-106 (209)
137 PRK08058 DNA polymerase III su 97.7 0.0013 2.8E-08 61.2 14.3 44 108-153 6-51 (329)
138 PF01695 IstB_IS21: IstB-like 97.7 0.00022 4.9E-09 60.1 8.2 71 130-220 47-117 (178)
139 PRK09183 transposase/IS protei 97.6 0.001 2.2E-08 59.7 12.6 24 130-153 102-125 (259)
140 TIGR00602 rad24 checkpoint pro 97.6 0.00042 9.1E-09 69.4 10.8 46 106-153 83-133 (637)
141 PRK07952 DNA replication prote 97.6 0.00055 1.2E-08 60.6 10.3 86 117-220 84-171 (244)
142 TIGR02640 gas_vesic_GvpN gas v 97.6 0.0033 7.2E-08 56.5 14.9 56 116-179 9-64 (262)
143 COG1223 Predicted ATPase (AAA+ 97.6 0.0015 3.3E-08 57.2 11.8 47 107-153 121-174 (368)
144 cd01123 Rad51_DMC1_radA Rad51_ 97.6 0.00036 7.9E-09 61.6 8.5 89 130-220 19-124 (235)
145 COG0466 Lon ATP-dependent Lon 97.6 0.015 3.2E-07 58.0 20.0 46 106-153 322-373 (782)
146 KOG0731 AAA+-type ATPase conta 97.5 0.002 4.2E-08 65.0 13.9 154 106-284 310-521 (774)
147 cd01393 recA_like RecA is a b 97.5 0.00059 1.3E-08 59.8 9.4 87 130-220 19-123 (226)
148 PRK06871 DNA polymerase III su 97.5 0.0082 1.8E-07 55.5 17.1 151 117-284 10-200 (325)
149 KOG0734 AAA+-type ATPase conta 97.5 0.002 4.3E-08 61.8 13.1 47 107-153 304-360 (752)
150 PRK14722 flhF flagellar biosyn 97.5 0.0028 6.1E-08 59.5 13.9 87 130-220 137-224 (374)
151 KOG0733 Nuclear AAA ATPase (VC 97.5 0.0024 5.2E-08 62.2 13.5 70 129-220 222-291 (802)
152 PF00448 SRP54: SRP54-type pro 97.5 0.00063 1.4E-08 58.3 8.9 88 130-220 1-92 (196)
153 COG0542 clpA ATP-binding subun 97.5 0.00033 7E-09 70.9 8.1 133 106-255 169-346 (786)
154 PF10236 DAP3: Mitochondrial r 97.5 0.0063 1.4E-07 56.1 15.9 49 236-284 258-306 (309)
155 KOG0744 AAA+-type ATPase [Post 97.5 0.0016 3.4E-08 58.8 11.3 80 130-220 177-259 (423)
156 PRK08939 primosomal protein Dn 97.5 0.00047 1E-08 63.3 8.3 72 129-220 155-226 (306)
157 PRK09361 radB DNA repair and r 97.5 0.00047 1E-08 60.5 8.0 85 130-220 23-116 (225)
158 KOG0743 AAA+-type ATPase [Post 97.5 0.027 5.9E-07 53.3 19.8 164 115-292 211-414 (457)
159 PF13207 AAA_17: AAA domain; P 97.5 8.3E-05 1.8E-09 58.3 2.8 22 132-153 1-22 (121)
160 PRK06921 hypothetical protein; 97.4 0.0009 1.9E-08 60.3 9.6 39 129-169 116-154 (266)
161 TIGR02012 tigrfam_recA protein 97.4 0.0004 8.7E-09 63.8 7.3 83 130-220 55-142 (321)
162 PRK05541 adenylylsulfate kinas 97.4 0.00034 7.4E-09 58.9 6.4 36 129-167 6-41 (176)
163 PF13177 DNA_pol3_delta2: DNA 97.4 0.0029 6.3E-08 52.5 11.7 39 116-154 4-43 (162)
164 KOG0735 AAA+-type ATPase [Post 97.4 0.0016 3.4E-08 64.5 11.4 128 130-280 431-608 (952)
165 KOG1514 Origin recognition com 97.4 0.007 1.5E-07 60.0 15.7 176 107-288 396-622 (767)
166 cd00983 recA RecA is a bacter 97.4 0.00042 9.2E-09 63.7 7.1 83 130-220 55-142 (325)
167 TIGR02902 spore_lonB ATP-depen 97.4 0.006 1.3E-07 60.5 15.6 46 106-153 64-109 (531)
168 cd01394 radB RadB. The archaea 97.4 0.00076 1.6E-08 58.9 8.0 85 130-220 19-112 (218)
169 TIGR01243 CDC48 AAA family ATP 97.4 0.006 1.3E-07 63.1 15.7 24 130-153 487-510 (733)
170 PRK09354 recA recombinase A; P 97.4 0.0006 1.3E-08 63.2 7.5 83 130-220 60-147 (349)
171 PRK10787 DNA-binding ATP-depen 97.4 0.016 3.5E-07 60.1 18.6 46 106-153 321-372 (784)
172 cd01120 RecA-like_NTPases RecA 97.4 0.0014 3.1E-08 53.7 9.1 40 132-174 1-40 (165)
173 KOG2228 Origin recognition com 97.3 0.0031 6.8E-08 57.2 11.5 145 106-255 23-219 (408)
174 PRK06090 DNA polymerase III su 97.3 0.019 4E-07 53.0 16.9 151 117-287 11-201 (319)
175 PRK10865 protein disaggregatio 97.3 0.004 8.7E-08 65.2 14.1 46 106-153 567-621 (857)
176 COG1373 Predicted ATPase (AAA+ 97.3 0.0061 1.3E-07 58.2 14.2 108 117-250 25-162 (398)
177 PF08423 Rad51: Rad51; InterP 97.3 0.0024 5.2E-08 57.2 10.7 90 130-220 38-142 (256)
178 KOG0728 26S proteasome regulat 97.3 0.005 1.1E-07 53.7 12.0 148 128-290 179-366 (404)
179 PRK07993 DNA polymerase III su 97.3 0.015 3.3E-07 54.1 16.2 152 117-284 10-201 (334)
180 TIGR03877 thermo_KaiC_1 KaiC d 97.3 0.0024 5.2E-08 56.5 10.5 86 129-220 20-135 (237)
181 KOG0741 AAA+-type ATPase [Post 97.3 0.014 2.9E-07 56.3 15.6 121 129-277 537-704 (744)
182 PHA02244 ATPase-like protein 97.3 0.0039 8.3E-08 58.1 11.8 46 106-153 95-142 (383)
183 PRK05703 flhF flagellar biosyn 97.3 0.014 3.1E-07 56.1 16.0 86 131-220 222-308 (424)
184 COG1484 DnaC DNA replication p 97.3 0.0017 3.6E-08 58.1 9.0 80 120-220 97-176 (254)
185 PRK00771 signal recognition pa 97.3 0.0021 4.6E-08 61.7 10.2 57 129-188 94-151 (437)
186 TIGR02639 ClpA ATP-dependent C 97.2 0.013 2.9E-07 60.5 16.5 45 107-153 454-507 (731)
187 PRK04296 thymidine kinase; Pro 97.2 0.00052 1.1E-08 58.6 5.2 83 131-220 3-87 (190)
188 CHL00195 ycf46 Ycf46; Provisio 97.2 0.0038 8.3E-08 60.9 11.7 25 129-153 258-282 (489)
189 COG0470 HolB ATPase involved i 97.2 0.0061 1.3E-07 56.4 12.5 44 109-154 3-48 (325)
190 TIGR03499 FlhF flagellar biosy 97.2 0.0019 4.2E-08 58.7 8.7 86 130-220 194-281 (282)
191 cd01133 F1-ATPase_beta F1 ATP 97.2 0.0013 2.8E-08 59.0 7.2 88 130-220 69-172 (274)
192 TIGR02238 recomb_DMC1 meiotic 97.2 0.002 4.3E-08 59.4 8.6 90 130-220 96-200 (313)
193 KOG1969 DNA replication checkp 97.2 0.0012 2.6E-08 65.5 7.5 71 129-220 325-396 (877)
194 TIGR03345 VI_ClpV1 type VI sec 97.2 0.013 2.8E-07 61.4 15.5 46 106-153 565-619 (852)
195 PRK04132 replication factor C 97.1 0.016 3.5E-07 59.9 15.9 131 136-287 570-731 (846)
196 PRK12727 flagellar biosynthesi 97.1 0.018 3.9E-07 56.2 15.2 87 130-220 350-437 (559)
197 KOG0733 Nuclear AAA ATPase (VC 97.1 0.011 2.3E-07 57.9 13.4 70 129-220 544-613 (802)
198 smart00763 AAA_PrkA PrkA AAA d 97.1 0.00067 1.5E-08 62.9 5.0 47 106-154 50-102 (361)
199 PRK06067 flagellar accessory p 97.1 0.004 8.6E-08 55.0 9.8 86 129-220 24-129 (234)
200 COG0542 clpA ATP-binding subun 97.1 0.024 5.2E-07 57.8 16.1 103 106-220 490-602 (786)
201 PRK11889 flhF flagellar biosyn 97.1 0.0024 5.1E-08 60.0 8.2 89 129-220 240-329 (436)
202 PRK06696 uridine kinase; Valid 97.1 0.00088 1.9E-08 58.8 5.2 38 117-154 6-46 (223)
203 cd03115 SRP The signal recogni 97.1 0.0027 5.8E-08 53.2 7.9 23 132-154 2-24 (173)
204 PRK06547 hypothetical protein; 97.0 0.00089 1.9E-08 56.1 4.7 34 120-153 5-38 (172)
205 PRK06964 DNA polymerase III su 97.0 0.043 9.3E-07 51.2 16.0 66 211-287 132-225 (342)
206 KOG0730 AAA+-type ATPase [Post 97.0 0.019 4.2E-07 56.6 14.1 46 108-153 435-491 (693)
207 cd00544 CobU Adenosylcobinamid 97.0 0.0016 3.4E-08 54.4 5.8 81 132-220 1-82 (169)
208 PRK04301 radA DNA repair and r 97.0 0.0053 1.1E-07 56.9 9.9 89 130-220 102-207 (317)
209 TIGR01243 CDC48 AAA family ATP 97.0 0.01 2.2E-07 61.5 12.9 24 130-153 212-235 (733)
210 PTZ00494 tuzin-like protein; P 97.0 0.37 8E-06 46.1 23.4 82 101-191 365-447 (664)
211 PLN03186 DNA repair protein RA 97.0 0.0033 7.2E-08 58.5 8.3 90 130-220 123-227 (342)
212 TIGR02236 recomb_radA DNA repa 97.0 0.0058 1.3E-07 56.4 9.9 90 130-220 95-201 (310)
213 KOG0727 26S proteasome regulat 97.0 0.025 5.3E-07 49.5 12.8 26 128-153 187-212 (408)
214 KOG0726 26S proteasome regulat 97.0 0.0063 1.4E-07 54.2 9.3 25 129-153 218-242 (440)
215 COG0468 RecA RecA/RadA recombi 97.0 0.0058 1.3E-07 55.0 9.4 87 129-220 59-150 (279)
216 PF14532 Sigma54_activ_2: Sigm 96.9 0.0013 2.7E-08 53.1 4.6 42 110-153 1-44 (138)
217 PRK14974 cell division protein 96.9 0.0093 2E-07 55.4 10.8 89 129-220 139-231 (336)
218 PRK06995 flhF flagellar biosyn 96.9 0.024 5.3E-07 55.1 14.0 87 130-220 256-343 (484)
219 TIGR03878 thermo_KaiC_2 KaiC d 96.9 0.0038 8.2E-08 56.1 8.1 40 130-172 36-75 (259)
220 PLN03187 meiotic recombination 96.9 0.0056 1.2E-07 57.0 9.3 90 130-220 126-230 (344)
221 PRK10867 signal recognition pa 96.9 0.0038 8.2E-08 59.9 8.3 25 129-153 99-123 (433)
222 PRK05800 cobU adenosylcobinami 96.9 0.00075 1.6E-08 56.5 3.1 23 131-153 2-24 (170)
223 TIGR00959 ffh signal recogniti 96.9 0.0056 1.2E-07 58.7 9.4 25 129-153 98-122 (428)
224 COG0541 Ffh Signal recognition 96.9 0.08 1.7E-06 50.1 16.6 70 117-189 78-157 (451)
225 PF13238 AAA_18: AAA domain; P 96.9 0.00066 1.4E-08 53.5 2.6 21 133-153 1-21 (129)
226 PRK04328 hypothetical protein; 96.9 0.0039 8.4E-08 55.7 7.8 41 129-172 22-62 (249)
227 COG1618 Predicted nucleotide k 96.9 0.00098 2.1E-08 54.1 3.4 24 131-154 6-29 (179)
228 TIGR02239 recomb_RAD51 DNA rep 96.9 0.0051 1.1E-07 56.8 8.6 90 130-220 96-200 (316)
229 PRK09270 nucleoside triphospha 96.9 0.01 2.2E-07 52.2 10.2 26 128-153 31-56 (229)
230 TIGR03346 chaperone_ClpB ATP-d 96.9 0.0053 1.1E-07 64.5 9.6 46 106-153 564-618 (852)
231 TIGR01359 UMP_CMP_kin_fam UMP- 96.9 0.0018 3.8E-08 54.8 5.1 22 132-153 1-22 (183)
232 PRK05480 uridine/cytidine kina 96.8 0.001 2.2E-08 57.7 3.6 28 127-154 3-30 (209)
233 PF06745 KaiC: KaiC; InterPro 96.8 0.0016 3.6E-08 57.1 5.0 86 130-220 19-124 (226)
234 PF01583 APS_kinase: Adenylyls 96.8 0.00064 1.4E-08 55.7 2.1 25 130-154 2-26 (156)
235 PF00154 RecA: recA bacterial 96.8 0.004 8.7E-08 57.2 7.4 83 130-220 53-140 (322)
236 cd02027 APSK Adenosine 5'-phos 96.8 0.0035 7.7E-08 51.2 6.4 22 132-153 1-22 (149)
237 KOG2004 Mitochondrial ATP-depe 96.8 0.022 4.7E-07 56.8 12.7 65 106-178 410-480 (906)
238 COG0563 Adk Adenylate kinase a 96.8 0.0027 5.9E-08 53.4 5.8 23 132-154 2-24 (178)
239 PF00485 PRK: Phosphoribulokin 96.8 0.00098 2.1E-08 57.1 3.2 23 132-154 1-23 (194)
240 PRK08233 hypothetical protein; 96.8 0.001 2.3E-08 56.0 3.3 25 130-154 3-27 (182)
241 COG4608 AppF ABC-type oligopep 96.8 0.0079 1.7E-07 53.3 8.8 86 130-220 39-136 (268)
242 PRK08699 DNA polymerase III su 96.8 0.018 3.9E-07 53.4 11.6 25 129-153 20-44 (325)
243 PTZ00035 Rad51 protein; Provis 96.8 0.0096 2.1E-07 55.5 9.8 89 130-220 118-222 (337)
244 PRK12726 flagellar biosynthesi 96.8 0.0062 1.4E-07 57.0 8.4 88 129-220 205-294 (407)
245 PRK15429 formate hydrogenlyase 96.8 0.08 1.7E-06 54.5 17.4 45 107-153 376-422 (686)
246 COG2812 DnaX DNA polymerase II 96.8 0.0061 1.3E-07 59.4 8.6 161 106-280 15-213 (515)
247 cd02025 PanK Pantothenate kina 96.8 0.0073 1.6E-07 52.8 8.4 23 132-154 1-23 (220)
248 CHL00095 clpC Clp protease ATP 96.8 0.0057 1.2E-07 64.0 9.0 46 106-153 508-562 (821)
249 PRK10733 hflB ATP-dependent me 96.8 0.025 5.5E-07 57.5 13.4 46 108-153 153-208 (644)
250 cd01131 PilT Pilus retraction 96.7 0.0028 6.1E-08 54.5 5.6 23 131-153 2-24 (198)
251 COG1102 Cmk Cytidylate kinase 96.7 0.0043 9.4E-08 50.5 6.1 44 132-189 2-45 (179)
252 PRK08533 flagellar accessory p 96.7 0.0094 2E-07 52.5 8.9 48 130-182 24-71 (230)
253 TIGR02974 phageshock_pspF psp 96.7 0.033 7.1E-07 51.8 12.9 43 109-153 1-45 (329)
254 COG2607 Predicted ATPase (AAA+ 96.7 0.02 4.3E-07 49.8 10.4 48 105-154 58-109 (287)
255 PF13671 AAA_33: AAA domain; P 96.7 0.0014 2.9E-08 53.0 3.3 22 132-153 1-22 (143)
256 PRK11034 clpA ATP-dependent Cl 96.7 0.0058 1.3E-07 62.8 8.5 45 107-153 458-511 (758)
257 cd01124 KaiC KaiC is a circadi 96.7 0.0041 8.8E-08 52.6 6.3 44 132-180 1-44 (187)
258 KOG0739 AAA+-type ATPase [Post 96.7 0.44 9.4E-06 43.0 18.9 69 130-220 166-234 (439)
259 PRK12723 flagellar biosynthesi 96.7 0.0078 1.7E-07 57.0 8.6 89 129-220 173-263 (388)
260 PRK15455 PrkA family serine pr 96.7 0.0019 4.2E-08 63.2 4.6 44 108-153 77-126 (644)
261 PRK06762 hypothetical protein; 96.7 0.0013 2.9E-08 54.7 3.0 24 130-153 2-25 (166)
262 PRK05973 replicative DNA helic 96.7 0.015 3.2E-07 51.3 9.6 47 130-181 64-110 (237)
263 TIGR03881 KaiC_arch_4 KaiC dom 96.7 0.02 4.3E-07 50.3 10.6 40 130-172 20-59 (229)
264 COG0529 CysC Adenylylsulfate k 96.7 0.0041 9E-08 51.3 5.6 30 125-154 18-47 (197)
265 cd02019 NK Nucleoside/nucleoti 96.7 0.0015 3.3E-08 45.7 2.7 23 132-154 1-23 (69)
266 PF13481 AAA_25: AAA domain; P 96.6 0.011 2.4E-07 50.3 8.5 42 131-172 33-81 (193)
267 COG1126 GlnQ ABC-type polar am 96.6 0.042 9.2E-07 47.1 11.6 24 130-153 28-51 (240)
268 PRK12724 flagellar biosynthesi 96.6 0.0055 1.2E-07 58.2 7.1 85 130-220 223-308 (432)
269 PTZ00301 uridine kinase; Provi 96.6 0.0015 3.1E-08 56.7 3.0 24 130-153 3-26 (210)
270 TIGR01425 SRP54_euk signal rec 96.6 0.0095 2.1E-07 57.0 8.7 25 129-153 99-123 (429)
271 PRK12678 transcription termina 96.6 0.0029 6.3E-08 61.9 5.2 89 130-220 416-512 (672)
272 PF00006 ATP-synt_ab: ATP synt 96.6 0.0071 1.5E-07 52.5 7.2 85 131-220 16-114 (215)
273 PTZ00088 adenylate kinase 1; P 96.6 0.0019 4.2E-08 56.7 3.7 22 132-153 8-29 (229)
274 TIGR00235 udk uridine kinase. 96.6 0.0018 3.9E-08 56.1 3.5 25 129-153 5-29 (207)
275 PRK14527 adenylate kinase; Pro 96.6 0.0034 7.4E-08 53.6 5.1 25 129-153 5-29 (191)
276 TIGR00064 ftsY signal recognit 96.6 0.015 3.3E-07 52.5 9.5 88 129-220 71-163 (272)
277 cd01121 Sms Sms (bacterial rad 96.6 0.0058 1.3E-07 57.7 7.0 85 130-220 82-167 (372)
278 cd03214 ABC_Iron-Siderophores_ 96.6 0.04 8.7E-07 46.4 11.5 85 130-220 25-124 (180)
279 PRK09519 recA DNA recombinatio 96.6 0.0078 1.7E-07 61.6 8.2 83 130-220 60-147 (790)
280 PRK07667 uridine kinase; Provi 96.6 0.0029 6.4E-08 54.1 4.5 25 129-153 16-40 (193)
281 TIGR01360 aden_kin_iso1 adenyl 96.6 0.0017 3.8E-08 55.0 3.1 25 129-153 2-26 (188)
282 PF08433 KTI12: Chromatin asso 96.6 0.0075 1.6E-07 54.3 7.2 24 131-154 2-25 (270)
283 PRK08972 fliI flagellum-specif 96.6 0.012 2.6E-07 56.2 8.9 86 130-220 162-261 (444)
284 PRK06217 hypothetical protein; 96.6 0.0041 8.8E-08 52.7 5.3 23 132-154 3-25 (183)
285 PRK03839 putative kinase; Prov 96.6 0.0017 3.6E-08 54.9 2.9 22 132-153 2-23 (180)
286 PF07728 AAA_5: AAA domain (dy 96.6 0.0045 9.7E-08 49.7 5.3 42 133-180 2-43 (139)
287 PRK06002 fliI flagellum-specif 96.6 0.0089 1.9E-07 57.3 8.0 87 130-220 165-263 (450)
288 PRK00889 adenylylsulfate kinas 96.6 0.007 1.5E-07 50.8 6.6 25 130-154 4-28 (175)
289 cd01135 V_A-ATPase_B V/A-type 96.5 0.02 4.2E-07 51.4 9.6 90 130-220 69-175 (276)
290 COG0464 SpoVK ATPases of the A 96.5 0.046 9.9E-07 54.0 13.3 25 129-153 275-299 (494)
291 PLN00020 ribulose bisphosphate 96.5 0.016 3.5E-07 53.9 9.2 26 128-153 146-171 (413)
292 cd03238 ABC_UvrA The excision 96.5 0.025 5.5E-07 47.5 9.7 22 130-151 21-42 (176)
293 TIGR02858 spore_III_AA stage I 96.5 0.013 2.8E-07 52.8 8.5 27 127-153 108-134 (270)
294 TIGR02655 circ_KaiC circadian 96.5 0.01 2.3E-07 58.2 8.5 86 129-220 262-362 (484)
295 cd03247 ABCC_cytochrome_bd The 96.5 0.024 5.2E-07 47.7 9.7 24 130-153 28-51 (178)
296 TIGR00554 panK_bact pantothena 96.5 0.013 2.9E-07 53.2 8.5 26 128-153 60-85 (290)
297 TIGR00390 hslU ATP-dependent p 96.5 0.0056 1.2E-07 58.0 5.9 46 106-153 11-70 (441)
298 TIGR01817 nifA Nif-specific re 96.5 0.064 1.4E-06 53.5 13.8 47 105-153 194-242 (534)
299 PRK03846 adenylylsulfate kinas 96.5 0.0082 1.8E-07 51.5 6.5 26 128-153 22-47 (198)
300 PRK13765 ATP-dependent proteas 96.5 0.0053 1.1E-07 61.8 6.0 76 106-188 30-105 (637)
301 PRK00131 aroK shikimate kinase 96.4 0.0026 5.5E-08 53.1 3.2 24 130-153 4-27 (175)
302 cd03222 ABC_RNaseL_inhibitor T 96.4 0.033 7.2E-07 46.8 9.9 24 130-153 25-48 (177)
303 PF03205 MobB: Molybdopterin g 96.4 0.0038 8.2E-08 50.4 4.0 39 131-171 1-39 (140)
304 PRK08149 ATP synthase SpaL; Va 96.4 0.016 3.4E-07 55.4 8.7 87 129-220 150-250 (428)
305 PRK04040 adenylate kinase; Pro 96.4 0.0025 5.3E-08 54.3 3.0 24 130-153 2-25 (188)
306 COG0572 Udk Uridine kinase [Nu 96.4 0.0028 6E-08 54.6 3.3 26 129-154 7-32 (218)
307 KOG0729 26S proteasome regulat 96.4 0.023 4.9E-07 50.1 8.8 70 129-220 210-279 (435)
308 TIGR03498 FliI_clade3 flagella 96.4 0.019 4E-07 54.9 9.0 87 130-220 140-239 (418)
309 KOG2035 Replication factor C, 96.4 0.51 1.1E-05 42.2 17.0 179 117-311 21-262 (351)
310 PRK13531 regulatory ATPase Rav 96.4 0.0044 9.5E-08 59.8 4.7 43 107-153 20-62 (498)
311 KOG1970 Checkpoint RAD17-RFC c 96.4 0.093 2E-06 51.0 13.5 39 115-153 88-133 (634)
312 cd00561 CobA_CobO_BtuR ATP:cor 96.4 0.017 3.7E-07 47.5 7.6 23 131-153 3-25 (159)
313 cd03216 ABC_Carb_Monos_I This 96.4 0.015 3.2E-07 48.2 7.4 82 130-220 26-109 (163)
314 PRK14721 flhF flagellar biosyn 96.4 0.021 4.5E-07 54.6 9.2 87 130-220 191-278 (420)
315 PRK00625 shikimate kinase; Pro 96.4 0.0025 5.5E-08 53.4 2.7 22 132-153 2-23 (173)
316 cd02023 UMPK Uridine monophosp 96.4 0.0025 5.4E-08 54.7 2.7 22 132-153 1-22 (198)
317 KOG0738 AAA+-type ATPase [Post 96.4 0.04 8.7E-07 51.2 10.5 23 131-153 246-268 (491)
318 cd01132 F1_ATPase_alpha F1 ATP 96.3 0.011 2.3E-07 53.0 6.7 86 130-220 69-170 (274)
319 PRK05439 pantothenate kinase; 96.3 0.022 4.8E-07 52.2 8.9 26 128-153 84-109 (311)
320 KOG0652 26S proteasome regulat 96.3 0.15 3.2E-06 45.0 13.4 39 115-153 177-228 (424)
321 cd03246 ABCC_Protease_Secretio 96.3 0.029 6.3E-07 46.9 9.1 24 130-153 28-51 (173)
322 CHL00081 chlI Mg-protoporyphyr 96.3 0.0047 1E-07 57.6 4.5 49 103-153 13-61 (350)
323 cd03230 ABC_DR_subfamily_A Thi 96.3 0.032 7E-07 46.7 9.3 24 130-153 26-49 (173)
324 PRK05922 type III secretion sy 96.3 0.022 4.7E-07 54.6 9.0 87 129-220 156-256 (434)
325 COG0465 HflB ATP-dependent Zn 96.3 0.084 1.8E-06 52.4 13.3 48 106-153 149-206 (596)
326 COG1066 Sms Predicted ATP-depe 96.3 0.014 2.9E-07 54.7 7.3 84 130-220 93-177 (456)
327 PRK14723 flhF flagellar biosyn 96.3 0.034 7.3E-07 56.9 10.8 58 130-188 185-243 (767)
328 COG2842 Uncharacterized ATPase 96.3 0.16 3.5E-06 45.6 13.8 103 105-220 70-174 (297)
329 PRK08927 fliI flagellum-specif 96.3 0.033 7.1E-07 53.5 10.1 87 129-220 157-257 (442)
330 PF00910 RNA_helicase: RNA hel 96.3 0.0024 5.2E-08 49.0 2.1 22 133-154 1-22 (107)
331 TIGR02030 BchI-ChlI magnesium 96.3 0.006 1.3E-07 56.7 5.1 47 105-153 2-48 (337)
332 PF12775 AAA_7: P-loop contain 96.3 0.0052 1.1E-07 55.5 4.6 56 119-178 23-78 (272)
333 TIGR02322 phosphon_PhnN phosph 96.3 0.0034 7.3E-08 52.9 3.2 23 131-153 2-24 (179)
334 cd00227 CPT Chloramphenicol (C 96.3 0.0033 7.1E-08 52.9 3.1 23 131-153 3-25 (175)
335 COG1419 FlhF Flagellar GTP-bin 96.3 0.038 8.2E-07 51.9 10.2 99 118-220 187-290 (407)
336 PRK07594 type III secretion sy 96.3 0.025 5.5E-07 54.2 9.3 87 129-220 154-254 (433)
337 PRK06936 type III secretion sy 96.3 0.03 6.6E-07 53.6 9.7 87 129-220 161-261 (439)
338 cd03223 ABCD_peroxisomal_ALDP 96.3 0.048 1E-06 45.4 10.0 85 130-220 27-118 (166)
339 cd00984 DnaB_C DnaB helicase C 96.3 0.037 7.9E-07 49.0 9.8 49 131-183 14-62 (242)
340 PRK10536 hypothetical protein; 96.3 0.011 2.3E-07 52.5 6.2 43 107-153 55-97 (262)
341 cd02021 GntK Gluconate kinase 96.2 0.0032 7E-08 51.3 2.7 22 132-153 1-22 (150)
342 TIGR02655 circ_KaiC circadian 96.2 0.017 3.6E-07 56.8 8.1 41 129-171 20-60 (484)
343 PRK12597 F0F1 ATP synthase sub 96.2 0.011 2.4E-07 57.0 6.6 89 130-220 143-246 (461)
344 cd02024 NRK1 Nicotinamide ribo 96.2 0.0033 7.1E-08 53.3 2.7 22 132-153 1-22 (187)
345 PRK05022 anaerobic nitric oxid 96.2 0.023 4.9E-07 56.3 8.9 46 106-153 186-233 (509)
346 cd01134 V_A-ATPase_A V/A-type 96.2 0.059 1.3E-06 50.0 10.8 48 131-183 158-206 (369)
347 TIGR00764 lon_rel lon-related 96.2 0.013 2.9E-07 59.0 7.2 77 105-188 16-92 (608)
348 COG0467 RAD55 RecA-superfamily 96.2 0.0054 1.2E-07 55.1 4.1 41 129-172 22-62 (260)
349 cd01122 GP4d_helicase GP4d_hel 96.2 0.038 8.2E-07 49.8 9.6 52 130-185 30-81 (271)
350 COG1121 ZnuC ABC-type Mn/Zn tr 96.2 0.058 1.3E-06 47.8 10.3 23 131-153 31-53 (254)
351 PF07726 AAA_3: ATPase family 96.2 0.0022 4.8E-08 50.4 1.3 27 133-162 2-28 (131)
352 PRK05201 hslU ATP-dependent pr 96.2 0.0097 2.1E-07 56.4 5.7 46 106-153 14-73 (443)
353 TIGR03263 guanyl_kin guanylate 96.2 0.0046 1E-07 52.1 3.3 23 131-153 2-24 (180)
354 PTZ00185 ATPase alpha subunit; 96.1 0.043 9.3E-07 53.3 10.0 90 130-220 189-298 (574)
355 cd01136 ATPase_flagellum-secre 96.1 0.047 1E-06 50.4 10.0 86 130-220 69-168 (326)
356 TIGR03575 selen_PSTK_euk L-ser 96.1 0.021 4.5E-07 53.1 7.7 22 133-154 2-23 (340)
357 PRK09302 circadian clock prote 96.1 0.022 4.9E-07 56.4 8.5 41 129-171 30-70 (509)
358 PRK10751 molybdopterin-guanine 96.1 0.0055 1.2E-07 51.2 3.5 26 129-154 5-30 (173)
359 TIGR03880 KaiC_arch_3 KaiC dom 96.1 0.039 8.5E-07 48.3 9.1 40 130-172 16-55 (224)
360 TIGR03305 alt_F1F0_F1_bet alte 96.1 0.033 7.2E-07 53.5 9.1 89 130-220 138-241 (449)
361 cd02028 UMPK_like Uridine mono 96.1 0.0042 9.1E-08 52.5 2.7 23 132-154 1-23 (179)
362 TIGR02329 propionate_PrpR prop 96.1 0.13 2.9E-06 50.8 13.6 45 107-153 212-258 (526)
363 PRK09302 circadian clock prote 96.1 0.048 1E-06 54.0 10.5 85 130-220 273-372 (509)
364 cd02020 CMPK Cytidine monophos 96.1 0.0044 9.5E-08 50.1 2.7 22 132-153 1-22 (147)
365 COG1124 DppF ABC-type dipeptid 96.1 0.0082 1.8E-07 52.2 4.4 24 130-153 33-56 (252)
366 TIGR00150 HI0065_YjeE ATPase, 96.1 0.012 2.6E-07 46.9 5.0 25 130-154 22-46 (133)
367 KOG3347 Predicted nucleotide k 96.1 0.0096 2.1E-07 47.8 4.4 69 130-209 7-75 (176)
368 PRK10463 hydrogenase nickel in 96.1 0.013 2.9E-07 53.0 5.9 35 119-153 93-127 (290)
369 KOG1532 GTPase XAB1, interacts 96.1 0.0054 1.2E-07 54.1 3.2 25 129-153 18-42 (366)
370 PRK10416 signal recognition pa 96.1 0.044 9.5E-07 50.7 9.4 26 129-154 113-138 (318)
371 cd03228 ABCC_MRP_Like The MRP 96.1 0.044 9.6E-07 45.7 8.8 24 130-153 28-51 (171)
372 PF13086 AAA_11: AAA domain; P 96.0 0.014 3E-07 50.9 6.0 65 118-184 7-75 (236)
373 cd01129 PulE-GspE PulE/GspE Th 96.0 0.021 4.6E-07 51.3 7.2 32 122-153 72-103 (264)
374 PF08477 Miro: Miro-like prote 96.0 0.0058 1.2E-07 47.5 3.1 21 133-153 2-22 (119)
375 TIGR00073 hypB hydrogenase acc 96.0 0.01 2.2E-07 51.3 5.0 31 123-153 15-45 (207)
376 PRK13947 shikimate kinase; Pro 96.0 0.0046 9.9E-08 51.6 2.7 22 132-153 3-24 (171)
377 COG1703 ArgK Putative periplas 96.0 0.011 2.3E-07 53.1 5.0 62 119-181 38-101 (323)
378 PF03193 DUF258: Protein of un 96.0 0.012 2.6E-07 48.5 4.9 34 117-153 25-58 (161)
379 PRK06851 hypothetical protein; 96.0 0.1 2.2E-06 49.0 11.7 45 126-172 210-254 (367)
380 cd00267 ABC_ATPase ABC (ATP-bi 96.0 0.029 6.3E-07 46.1 7.4 80 131-220 26-107 (157)
381 PF00625 Guanylate_kin: Guanyl 96.0 0.0085 1.8E-07 50.7 4.2 36 130-168 2-37 (183)
382 PRK13407 bchI magnesium chelat 96.0 0.008 1.7E-07 55.8 4.3 48 104-153 5-52 (334)
383 PRK00300 gmk guanylate kinase; 96.0 0.0069 1.5E-07 52.2 3.7 24 130-153 5-28 (205)
384 PF13479 AAA_24: AAA domain 96.0 0.03 6.5E-07 48.7 7.6 20 131-150 4-23 (213)
385 PF06309 Torsin: Torsin; Inte 96.0 0.014 3E-07 45.8 4.8 47 107-153 25-76 (127)
386 TIGR00416 sms DNA repair prote 96.0 0.036 7.8E-07 53.9 8.8 81 130-220 94-179 (454)
387 PF13245 AAA_19: Part of AAA d 96.0 0.016 3.5E-07 41.4 4.8 25 129-153 9-33 (76)
388 PRK12339 2-phosphoglycerate ki 96.0 0.0064 1.4E-07 52.1 3.2 24 130-153 3-26 (197)
389 PRK13949 shikimate kinase; Pro 95.9 0.0054 1.2E-07 51.3 2.7 22 132-153 3-24 (169)
390 PRK11823 DNA repair protein Ra 95.9 0.012 2.7E-07 57.0 5.6 81 130-220 80-165 (446)
391 TIGR01313 therm_gnt_kin carboh 95.9 0.0046 1E-07 51.2 2.3 21 133-153 1-21 (163)
392 TIGR00708 cobA cob(I)alamin ad 95.9 0.054 1.2E-06 45.2 8.5 89 130-220 5-106 (173)
393 PRK10078 ribose 1,5-bisphospho 95.9 0.0066 1.4E-07 51.6 3.2 23 131-153 3-25 (186)
394 PRK14530 adenylate kinase; Pro 95.9 0.0062 1.3E-07 53.0 3.1 23 131-153 4-26 (215)
395 TIGR01420 pilT_fam pilus retra 95.9 0.026 5.7E-07 52.8 7.5 83 130-220 122-204 (343)
396 COG1936 Predicted nucleotide k 95.9 0.0067 1.4E-07 50.0 3.0 20 132-151 2-21 (180)
397 COG1428 Deoxynucleoside kinase 95.9 0.0057 1.2E-07 52.1 2.7 25 130-154 4-28 (216)
398 PF03308 ArgK: ArgK protein; 95.9 0.013 2.9E-07 51.7 5.0 60 119-179 16-77 (266)
399 TIGR03496 FliI_clade1 flagella 95.9 0.046 1E-06 52.2 9.1 86 130-220 137-236 (411)
400 TIGR01040 V-ATPase_V1_B V-type 95.9 0.049 1.1E-06 52.3 9.2 90 130-220 141-256 (466)
401 cd00464 SK Shikimate kinase (S 95.9 0.0063 1.4E-07 49.7 2.9 21 133-153 2-22 (154)
402 PF03266 NTPase_1: NTPase; In 95.9 0.0075 1.6E-07 50.3 3.3 22 133-154 2-23 (168)
403 PRK14737 gmk guanylate kinase; 95.9 0.0076 1.7E-07 51.2 3.4 25 129-153 3-27 (186)
404 PRK09099 type III secretion sy 95.9 0.033 7.2E-07 53.5 8.1 88 129-220 162-262 (441)
405 cd00071 GMPK Guanosine monopho 95.9 0.0064 1.4E-07 48.9 2.8 22 132-153 1-22 (137)
406 PF00158 Sigma54_activat: Sigm 95.9 0.032 7E-07 46.5 7.1 43 109-153 1-45 (168)
407 PRK07132 DNA polymerase III su 95.9 0.71 1.5E-05 42.3 16.3 144 117-286 4-184 (299)
408 PRK14529 adenylate kinase; Pro 95.9 0.029 6.3E-07 49.0 7.0 81 133-220 3-85 (223)
409 PF02562 PhoH: PhoH-like prote 95.8 0.011 2.4E-07 50.7 4.3 47 119-168 10-56 (205)
410 PRK09280 F0F1 ATP synthase sub 95.8 0.044 9.6E-07 52.8 8.7 89 130-220 144-247 (463)
411 COG3640 CooC CO dehydrogenase 95.8 0.014 2.9E-07 50.6 4.7 41 132-174 2-42 (255)
412 PRK15453 phosphoribulokinase; 95.8 0.0088 1.9E-07 53.7 3.6 27 128-154 3-29 (290)
413 PRK07721 fliI flagellum-specif 95.8 0.047 1E-06 52.6 8.8 89 128-220 156-257 (438)
414 PRK06820 type III secretion sy 95.8 0.039 8.4E-07 53.0 8.1 86 130-220 163-262 (440)
415 PRK05057 aroK shikimate kinase 95.8 0.008 1.7E-07 50.4 3.1 24 130-153 4-27 (172)
416 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.8 0.051 1.1E-06 44.0 7.7 24 130-153 26-49 (144)
417 PRK06793 fliI flagellum-specif 95.8 0.064 1.4E-06 51.5 9.4 88 129-220 155-255 (432)
418 TIGR01039 atpD ATP synthase, F 95.7 0.057 1.2E-06 52.0 9.0 89 130-220 143-246 (461)
419 PRK13948 shikimate kinase; Pro 95.7 0.01 2.2E-07 50.2 3.6 25 129-153 9-33 (182)
420 COG0714 MoxR-like ATPases [Gen 95.7 0.025 5.4E-07 52.7 6.4 65 107-181 24-88 (329)
421 PRK05688 fliI flagellum-specif 95.7 0.042 9.2E-07 52.9 8.0 86 130-220 168-267 (451)
422 KOG0736 Peroxisome assembly fa 95.7 0.028 6.1E-07 56.5 6.9 66 133-220 708-773 (953)
423 PRK07196 fliI flagellum-specif 95.7 0.045 9.7E-07 52.5 8.1 87 129-220 154-254 (434)
424 cd03213 ABCG_EPDR ABCG transpo 95.7 0.1 2.3E-06 44.5 9.8 24 130-153 35-58 (194)
425 PRK14738 gmk guanylate kinase; 95.7 0.01 2.3E-07 51.3 3.5 25 129-153 12-36 (206)
426 TIGR01650 PD_CobS cobaltochela 95.7 0.024 5.1E-07 52.2 5.9 35 117-153 53-87 (327)
427 PLN02200 adenylate kinase fami 95.7 0.009 2E-07 52.7 3.1 24 130-153 43-66 (234)
428 PRK11388 DNA-binding transcrip 95.7 0.22 4.8E-06 50.8 13.6 45 107-153 325-371 (638)
429 TIGR00455 apsK adenylylsulfate 95.7 0.027 5.8E-07 47.7 5.9 26 128-153 16-41 (184)
430 COG0055 AtpD F0F1-type ATP syn 95.7 0.021 4.6E-07 52.6 5.5 89 130-220 147-250 (468)
431 PRK13946 shikimate kinase; Pro 95.7 0.0087 1.9E-07 50.8 2.9 24 130-153 10-33 (184)
432 TIGR01069 mutS2 MutS2 family p 95.7 0.024 5.2E-07 58.7 6.6 25 129-153 321-345 (771)
433 PRK06761 hypothetical protein; 95.7 0.013 2.8E-07 53.0 4.1 24 131-154 4-27 (282)
434 PRK13975 thymidylate kinase; P 95.6 0.009 2E-07 51.0 3.0 24 131-154 3-26 (196)
435 cd00820 PEPCK_HprK Phosphoenol 95.6 0.011 2.4E-07 45.1 3.0 21 131-151 16-36 (107)
436 cd01672 TMPK Thymidine monopho 95.6 0.024 5.2E-07 48.3 5.6 23 132-154 2-24 (200)
437 cd01125 repA Hexameric Replica 95.6 0.062 1.3E-06 47.6 8.3 22 132-153 3-24 (239)
438 PRK04182 cytidylate kinase; Pr 95.6 0.0095 2.1E-07 50.0 3.0 22 132-153 2-23 (180)
439 TIGR02546 III_secr_ATP type II 95.6 0.11 2.3E-06 50.1 10.4 87 129-220 144-244 (422)
440 KOG0651 26S proteasome regulat 95.6 0.034 7.4E-07 50.2 6.3 25 129-153 165-189 (388)
441 PF13521 AAA_28: AAA domain; P 95.6 0.0087 1.9E-07 49.6 2.6 21 133-153 2-22 (163)
442 TIGR03497 FliI_clade2 flagella 95.6 0.069 1.5E-06 51.1 8.9 87 129-220 136-236 (413)
443 COG3598 RepA RecA-family ATPas 95.6 0.031 6.6E-07 50.7 6.0 90 131-220 90-203 (402)
444 PRK14532 adenylate kinase; Pro 95.6 0.0093 2E-07 50.7 2.8 21 133-153 3-23 (188)
445 TIGR00176 mobB molybdopterin-g 95.6 0.012 2.6E-07 48.4 3.3 23 132-154 1-23 (155)
446 PRK09825 idnK D-gluconate kina 95.6 0.011 2.5E-07 49.7 3.2 23 131-153 4-26 (176)
447 PF03215 Rad17: Rad17 cell cyc 95.5 0.023 4.9E-07 56.0 5.6 48 115-167 25-77 (519)
448 COG0003 ArsA Predicted ATPase 95.5 0.02 4.3E-07 52.8 4.9 44 130-176 2-45 (322)
449 COG0194 Gmk Guanylate kinase [ 95.5 0.012 2.6E-07 49.2 3.1 24 130-153 4-27 (191)
450 TIGR01041 ATP_syn_B_arch ATP s 95.5 0.06 1.3E-06 52.1 8.3 90 130-220 141-247 (458)
451 COG2274 SunT ABC-type bacterio 95.5 0.14 3E-06 52.5 11.3 24 130-153 499-522 (709)
452 cd01428 ADK Adenylate kinase ( 95.5 0.01 2.2E-07 50.6 2.7 21 133-153 2-22 (194)
453 PRK08472 fliI flagellum-specif 95.5 0.082 1.8E-06 50.8 9.0 25 129-153 156-180 (434)
454 TIGR02868 CydC thiol reductant 95.5 0.13 2.8E-06 51.3 10.9 25 129-153 360-384 (529)
455 COG1116 TauB ABC-type nitrate/ 95.5 0.012 2.6E-07 51.5 3.1 24 130-153 29-52 (248)
456 PRK06731 flhF flagellar biosyn 95.5 0.083 1.8E-06 47.6 8.6 88 129-220 74-163 (270)
457 PF03969 AFG1_ATPase: AFG1-lik 95.5 0.033 7.3E-07 52.3 6.3 76 129-220 61-136 (362)
458 TIGR02173 cyt_kin_arch cytidyl 95.5 0.012 2.5E-07 49.0 3.0 22 132-153 2-23 (171)
459 PLN02165 adenylate isopentenyl 95.5 0.011 2.3E-07 54.6 2.9 30 125-154 38-67 (334)
460 PF02374 ArsA_ATPase: Anion-tr 95.5 0.017 3.6E-07 53.2 4.2 23 131-153 2-24 (305)
461 COG2884 FtsE Predicted ATPase 95.4 0.22 4.7E-06 42.0 10.1 24 130-153 28-51 (223)
462 TIGR00041 DTMP_kinase thymidyl 95.4 0.031 6.7E-07 47.6 5.6 24 131-154 4-27 (195)
463 TIGR03574 selen_PSTK L-seryl-t 95.4 0.01 2.2E-07 52.9 2.7 23 132-154 1-23 (249)
464 COG2019 AdkA Archaeal adenylat 95.4 0.014 2.9E-07 47.9 3.0 24 130-153 4-27 (189)
465 PF01078 Mg_chelatase: Magnesi 95.4 0.024 5.2E-07 48.5 4.7 44 107-154 3-46 (206)
466 TIGR03600 phage_DnaB phage rep 95.4 0.67 1.5E-05 44.7 15.4 52 131-186 195-246 (421)
467 PF03029 ATP_bind_1: Conserved 95.4 0.016 3.4E-07 51.3 3.7 20 135-154 1-20 (238)
468 COG1100 GTPase SAR1 and relate 95.4 0.012 2.5E-07 51.1 2.9 23 131-153 6-28 (219)
469 PLN02348 phosphoribulokinase 95.4 0.015 3.1E-07 54.8 3.6 35 120-154 38-73 (395)
470 COG3854 SpoIIIAA ncharacterize 95.4 0.05 1.1E-06 47.1 6.4 42 121-162 128-169 (308)
471 PF00005 ABC_tran: ABC transpo 95.4 0.014 3E-07 46.7 3.0 23 131-153 12-34 (137)
472 CHL00059 atpA ATP synthase CF1 95.4 0.066 1.4E-06 51.8 8.0 86 130-220 141-242 (485)
473 PF09848 DUF2075: Uncharacteri 95.4 0.06 1.3E-06 50.6 7.7 41 131-172 2-42 (352)
474 PRK03731 aroL shikimate kinase 95.3 0.014 3.1E-07 48.7 3.1 23 131-153 3-25 (171)
475 PF06068 TIP49: TIP49 C-termin 95.3 0.022 4.9E-07 52.8 4.5 48 106-153 23-73 (398)
476 PRK13343 F0F1 ATP synthase sub 95.3 0.062 1.4E-06 52.4 7.8 86 130-220 162-263 (502)
477 COG4088 Predicted nucleotide k 95.3 0.013 2.8E-07 49.7 2.7 24 131-154 2-25 (261)
478 TIGR03324 alt_F1F0_F1_al alter 95.3 0.096 2.1E-06 50.9 8.9 86 130-220 162-263 (497)
479 TIGR01026 fliI_yscN ATPase Fli 95.3 0.066 1.4E-06 51.7 7.8 86 130-220 163-262 (440)
480 PRK13695 putative NTPase; Prov 95.3 0.017 3.6E-07 48.5 3.4 22 132-153 2-23 (174)
481 PHA02530 pseT polynucleotide k 95.3 0.013 2.9E-07 53.6 3.0 23 131-153 3-25 (300)
482 COG1157 FliI Flagellar biosynt 95.3 0.1 2.2E-06 49.0 8.7 91 125-220 158-262 (441)
483 CHL00060 atpB ATP synthase CF1 95.3 0.064 1.4E-06 52.1 7.6 89 130-220 161-271 (494)
484 PRK14531 adenylate kinase; Pro 95.3 0.015 3.4E-07 49.2 3.1 23 131-153 3-25 (183)
485 PRK10875 recD exonuclease V su 95.3 0.064 1.4E-06 54.0 7.9 54 130-183 167-220 (615)
486 TIGR01287 nifH nitrogenase iro 95.3 0.014 3E-07 52.8 3.1 24 131-154 1-24 (275)
487 TIGR00665 DnaB replicative DNA 95.3 0.63 1.4E-05 45.1 14.7 53 130-186 195-247 (434)
488 smart00178 SAR Sar1p-like memb 95.3 0.029 6.3E-07 47.4 4.8 35 119-153 5-40 (184)
489 PF01926 MMR_HSR1: 50S ribosom 95.3 0.018 3.8E-07 44.6 3.2 21 133-153 2-22 (116)
490 KOG0735 AAA+-type ATPase [Post 95.3 0.29 6.3E-06 49.2 12.0 68 131-220 702-769 (952)
491 cd02022 DPCK Dephospho-coenzym 95.3 0.014 2.9E-07 49.3 2.7 21 132-152 1-21 (179)
492 cd02029 PRK_like Phosphoribulo 95.3 0.043 9.3E-07 49.0 5.9 23 132-154 1-23 (277)
493 PRK07960 fliI flagellum-specif 95.2 0.07 1.5E-06 51.3 7.7 86 129-220 174-274 (455)
494 COG0237 CoaE Dephospho-CoA kin 95.2 0.016 3.5E-07 49.7 3.0 24 130-153 2-25 (201)
495 PRK08356 hypothetical protein; 95.2 0.02 4.2E-07 49.1 3.5 21 131-151 6-26 (195)
496 cd04139 RalA_RalB RalA/RalB su 95.2 0.017 3.6E-07 47.3 3.0 22 132-153 2-23 (164)
497 PRK00409 recombination and DNA 95.2 0.19 4.2E-06 52.2 11.3 24 129-152 326-349 (782)
498 COG0703 AroK Shikimate kinase 95.2 0.018 3.8E-07 47.8 3.0 23 131-153 3-25 (172)
499 PRK06851 hypothetical protein; 95.2 0.025 5.5E-07 53.0 4.4 43 127-171 27-69 (367)
500 cd03282 ABC_MSH4_euk MutS4 hom 95.1 0.025 5.4E-07 48.8 4.0 24 130-153 29-52 (204)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=3.7e-53 Score=429.78 Aligned_cols=351 Identities=34% Similarity=0.537 Sum_probs=286.4
Q ss_pred hhHHHHHHHHHHhHHHHHHHHH-HhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhCC-------------------
Q 038454 2 KNLERVLQEFNSQKEDIEATLK-AEGDRGKKPRTEVKNWLQNVQRINSKAQSIEQEVKKRK------------------- 61 (359)
Q Consensus 2 ~~l~~~~~~L~~~l~~i~~~l~-a~~~~~~~~~~~~~~W~~~l~~~~~~~ed~~d~~~~~~------------------- 61 (359)
.+.++.+..|++.+..++.+++ ++..+.. ...+..|...+++++|++++.++.+.-..
T Consensus 24 ~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~--~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~~l~~~~~~~~~~ 101 (889)
T KOG4658|consen 24 DGKDNYILELKENLKALQSALEDLDAKRDD--LERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKANDLLSTRSVERQRL 101 (889)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHHhhcch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhHHHHHHH
Confidence 3567789999999999999999 7764443 56889999999999999999988764110
Q ss_pred --cc-------ccccchhhHHHHHHHHHHHHhccCCcccccccCCCC---CcccCCcccccccchHHHHHHHHHHhcCCC
Q 038454 62 --YF-------LCARLGKDVDAKIQEMKDCHQKGCSFISLVIDAPPS---SGLILPTTTLVGENTKKIVKKVWEDLMGDK 129 (359)
Q Consensus 62 --~~-------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~vGr~~~~~~~~l~~~l~~~~ 129 (359)
+. .-+.+.+++-.+++.++.+..++.+........++. ..+..+... ||.+. .++++++.|.+++
T Consensus 102 c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-VG~e~--~~~kl~~~L~~d~ 178 (889)
T KOG4658|consen 102 CLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESD-VGLET--MLEKLWNRLMEDD 178 (889)
T ss_pred hhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCcccc-ccHHH--HHHHHHHHhccCC
Confidence 01 112455666666666666665544433222111111 112222333 99977 9999999999988
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHHHhcCCCCC--CccHHHHHHHHHHHH
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAMALKLSLTE--DEDKVSRARRLLGKL 207 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~l 207 (359)
..+++|+||||+||||||++++|++..+.++|+.++||+||+.++...++.+|+..++..... .......+..+.+.|
T Consensus 179 ~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L 258 (889)
T KOG4658|consen 179 VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLL 258 (889)
T ss_pred CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHh
Confidence 899999999999999999999999544899999999999999999999999999999874332 233468889999999
Q ss_pred hcCCcEEEEEecC----------------CCC-eEEEeec-------ccce-eeeecCCCChHHHHHHHHHhhcCCCCCC
Q 038454 208 KAKKKFVLILDDI----------------DNH-TFCWGLR-------SMGC-EEVRVPPLSKEEALNLFLDKVGRNILHV 262 (359)
Q Consensus 208 ~~~k~~LlVlDdv----------------~~g-~ilvTtr-------~~~~-~~~~l~~L~~~ea~~lf~~~~~~~~~~~ 262 (359)
.+ +||||||||| .+| +|++||| .++. ..++++.|+.+|||.||++.+|......
T Consensus 259 ~~-krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~ 337 (889)
T KOG4658|consen 259 EG-KRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGS 337 (889)
T ss_pred cc-CceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhccccccc
Confidence 98 9999999999 577 9999999 2554 5699999999999999999998875545
Q ss_pred CCchHHHHHHHHHHcCCchhHHHHHHHhhcCCCChhHHHHHHHHHhhc-ccccCCChhhHhhHHHHhhhcCCCcchhHHH
Q 038454 263 PTLNEEIINSVVEECAGLQLAIFTVVGCMRGVDEIHEWRNALNELRGL-VRSFSGINADVLGRLEFSYLRLKDKKVQHCF 341 (359)
Q Consensus 263 ~~~~~~~~~~i~~~c~g~Plai~~~~~~L~~~~~~~~w~~~l~~~~~~-~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cf 341 (359)
.+.++++|++++++|+|+|||++++|+.|+.+.+..+|+++++.+.+. ..+.++..+.++++|.+||+.| |+++|.||
T Consensus 338 ~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L-~~~lK~CF 416 (889)
T KOG4658|consen 338 HPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNL-PEELKSCF 416 (889)
T ss_pred cccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhh-hHHHHHHH
Confidence 566999999999999999999999999999999999999999999876 3455566789999999999999 69999999
Q ss_pred hhccccCCCCccCCCCCC
Q 038454 342 LYCALYPEDFAISKDELI 359 (359)
Q Consensus 342 ~~~s~fp~~~~i~~~~Li 359 (359)
+|||+||+||.|+++.||
T Consensus 417 LycalFPED~~I~~e~Li 434 (889)
T KOG4658|consen 417 LYCALFPEDYEIKKEKLI 434 (889)
T ss_pred HhhccCCcccccchHHHH
Confidence 999999999999999885
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=5e-43 Score=320.24 Aligned_cols=241 Identities=32% Similarity=0.563 Sum_probs=203.1
Q ss_pred HHHHHHHHHhcC--CCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHHHhcCCCC--
Q 038454 116 KIVKKVWEDLMG--DKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAMALKLSLT-- 191 (359)
Q Consensus 116 ~~~~~l~~~l~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-- 191 (359)
.++++|.++|.+ ++.++|+|+|+||+||||||.+++++ ....++|+.++|++++...+...++..|+.+++....
T Consensus 3 ~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~-~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~ 81 (287)
T PF00931_consen 3 KEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARD-LRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSI 81 (287)
T ss_dssp HHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCH-HHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STS
T ss_pred HHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccc-ccccccccccccccccccccccccccccccccccccccc
Confidence 488999999988 78999999999999999999999998 5588999999999999999999999999999988633
Q ss_pred -CCccHHHHHHHHHHHHhcCCcEEEEEecC----------------CCC-eEEEeecc------cc--eeeeecCCCChH
Q 038454 192 -EDEDKVSRARRLLGKLKAKKKFVLILDDI----------------DNH-TFCWGLRS------MG--CEEVRVPPLSKE 245 (359)
Q Consensus 192 -~~~~~~~~~~~l~~~l~~~k~~LlVlDdv----------------~~g-~ilvTtr~------~~--~~~~~l~~L~~~ 245 (359)
...+.......+.+.+.+ +++||||||| ..| +||+|||. .+ ...+++++|+.+
T Consensus 82 ~~~~~~~~~~~~l~~~L~~-~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~~ 160 (287)
T PF00931_consen 82 SDPKDIEELQDQLRELLKD-KRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSEE 160 (287)
T ss_dssp SCCSSHHHHHHHHHHHHCC-TSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--HH
T ss_pred ccccccccccccchhhhcc-ccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 346777899999999998 8999999999 346 99999992 12 457999999999
Q ss_pred HHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHHHHhhcCCCChhHHHHHHHHHhhcccccCCChhhHhhHH
Q 038454 246 EALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTVVGCMRGVDEIHEWRNALNELRGLVRSFSGINADVLGRL 325 (359)
Q Consensus 246 ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~L~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~l 325 (359)
+|++||.+.++......++...+.+++|+++|+|+||||.++|++|+.+.+..+|..+++++.....+..+....+..++
T Consensus 161 ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l 240 (287)
T PF00931_consen 161 EALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSAL 240 (287)
T ss_dssp HHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999997765224455677899999999999999999999997656789999999998876544444568899999
Q ss_pred HHhhhcCCCcchhHHHhhccccCCCCccCCCCCC
Q 038454 326 EFSYLRLKDKKVQHCFLYCALYPEDFAISKDELI 359 (359)
Q Consensus 326 ~~sy~~L~~~~~k~cf~~~s~fp~~~~i~~~~Li 359 (359)
.+||+.| |+++|.||+|||+||+++.|+++.||
T Consensus 241 ~~s~~~L-~~~~~~~f~~L~~f~~~~~i~~~~li 273 (287)
T PF00931_consen 241 ELSYDSL-PDELRRCFLYLSIFPEGVPIPRERLI 273 (287)
T ss_dssp HHHHHSS-HTCCHHHHHHGGGSGTTS-EEHHHHH
T ss_pred eechhcC-CccHHHHHhhCcCCCCCceECHHHHH
Confidence 9999999 78999999999999999999987664
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.8e-33 Score=298.86 Aligned_cols=232 Identities=22% Similarity=0.298 Sum_probs=181.4
Q ss_pred cccccccchHHHHHHHHHHhc--CCCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEe---CCC--------
Q 038454 106 TTTLVGENTKKIVKKVWEDLM--GDKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTV---SQP-------- 172 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~---~~~-------- 172 (359)
.+.+||++. .++++..++. .+++++|+|+||||+||||||+++|++ ...+|++.+|+.. +..
T Consensus 183 ~~~~vG~~~--~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~---l~~~F~g~vfv~~~~v~~~~~~~~~~~ 257 (1153)
T PLN03210 183 FEDFVGIED--HIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSR---LSRQFQSSVFIDRAFISKSMEIYSSAN 257 (1153)
T ss_pred cccccchHH--HHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHH---HhhcCCeEEEeeccccccchhhccccc
Confidence 467999977 7777777764 457899999999999999999999998 6778988887742 111
Q ss_pred ---cC-HHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhcCCcEEEEEecC----------------CCC-eEEEeec-
Q 038454 173 ---LD-LVKLQAEIAMALKLSLTEDEDKVSRARRLLGKLKAKKKFVLILDDI----------------DNH-TFCWGLR- 230 (359)
Q Consensus 173 ---~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv----------------~~g-~ilvTtr- 230 (359)
.+ ...++..++..+......... ....+++.+.+ +|+||||||| ++| +||||||
T Consensus 258 ~~~~~~~~~l~~~~l~~il~~~~~~~~---~~~~~~~~L~~-krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd 333 (1153)
T PLN03210 258 PDDYNMKLHLQRAFLSEILDKKDIKIY---HLGAMEERLKH-RKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKD 333 (1153)
T ss_pred ccccchhHHHHHHHHHHHhCCCCcccC---CHHHHHHHHhC-CeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCc
Confidence 01 223445555554322111000 12456677887 9999999999 468 9999999
Q ss_pred -----ccce-eeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHHHHhhcCCCChhHHHHHH
Q 038454 231 -----SMGC-EEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTVVGCMRGVDEIHEWRNAL 304 (359)
Q Consensus 231 -----~~~~-~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~L~~~~~~~~w~~~l 304 (359)
..++ ..|+++.|+.++||+||+..||+... .+..+.+++++|+++|+|+|||++++|++|++ ++..+|+.++
T Consensus 334 ~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~-~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~-k~~~~W~~~l 411 (1153)
T PLN03210 334 KHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNS-PPDGFMELASEVALRAGNLPLGLNVLGSYLRG-RDKEDWMDML 411 (1153)
T ss_pred HHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCC-CcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcC-CCHHHHHHHH
Confidence 2333 57999999999999999999998654 45568899999999999999999999999998 6889999999
Q ss_pred HHHhhcccccCCChhhHhhHHHHhhhcCCCcchhHHHhhccccCCCCccC
Q 038454 305 NELRGLVRSFSGINADVLGRLEFSYLRLKDKKVQHCFLYCALYPEDFAIS 354 (359)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cf~~~s~fp~~~~i~ 354 (359)
+++... ...++..+|++||+.|+++..|.||++||+||.++.++
T Consensus 412 ~~L~~~------~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~ 455 (1153)
T PLN03210 412 PRLRNG------LDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN 455 (1153)
T ss_pred HHHHhC------ccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH
Confidence 998742 34689999999999994446899999999999987664
No 4
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.48 E-value=4.4e-12 Score=133.65 Aligned_cols=220 Identities=14% Similarity=0.206 Sum_probs=144.1
Q ss_pred ccCCcccccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCC-CcCHHHHHH
Q 038454 102 LILPTTTLVGENTKKIVKKVWEDLMGDKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQ-PLDLVKLQA 180 (359)
Q Consensus 102 ~~~~~~~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~ 180 (359)
+|..+..++-|+. ..+.+- .....+++.|+|++|.||||++.++.+. . +.++|+++.. ..+...+..
T Consensus 9 ~p~~~~~~~~R~r--l~~~l~---~~~~~~~~~v~apaG~GKTtl~~~~~~~---~----~~~~w~~l~~~d~~~~~f~~ 76 (903)
T PRK04841 9 RPVRLHNTVVRER--LLAKLS---GANNYRLVLVTSPAGYGKTTLISQWAAG---K----NNLGWYSLDESDNQPERFAS 76 (903)
T ss_pred CCCCccccCcchH--HHHHHh---cccCCCeEEEECCCCCCHHHHHHHHHHh---C----CCeEEEecCcccCCHHHHHH
Confidence 3444567787754 333332 1235789999999999999999998865 1 2589999964 456677778
Q ss_pred HHHHHhcCCCCC-------------CccHHHHHHHHHHHHhc-CCcEEEEEecC-------------------CCC-eEE
Q 038454 181 EIAMALKLSLTE-------------DEDKVSRARRLLGKLKA-KKKFVLILDDI-------------------DNH-TFC 226 (359)
Q Consensus 181 ~i~~~l~~~~~~-------------~~~~~~~~~~l~~~l~~-~k~~LlVlDdv-------------------~~g-~il 226 (359)
.++..+...... ..+.......+...+.. +.+++|||||+ .++ +++
T Consensus 77 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv 156 (903)
T PRK04841 77 YLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLV 156 (903)
T ss_pred HHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEE
Confidence 888777421111 02223344445555543 48999999999 345 888
Q ss_pred Eeeccc----------ceeeeecC----CCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHHHHhhc
Q 038454 227 WGLRSM----------GCEEVRVP----PLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTVVGCMR 292 (359)
Q Consensus 227 vTtr~~----------~~~~~~l~----~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~L~ 292 (359)
+|||.. ......+. +|+.+|+.+||....... -..+.+..|.+.|+|+|+++..++..+.
T Consensus 157 ~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~------~~~~~~~~l~~~t~Gwp~~l~l~~~~~~ 230 (903)
T PRK04841 157 VLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSP------IEAAESSRLCDDVEGWATALQLIALSAR 230 (903)
T ss_pred EEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCC------CCHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 999921 11123455 999999999998764322 2346678899999999999999988775
Q ss_pred CCCChhHHHHHHHHHhhcccccCC-ChhhHhhHHHH-hhhcCCCcchhHHHhhccccCC
Q 038454 293 GVDEIHEWRNALNELRGLVRSFSG-INADVLGRLEF-SYLRLKDKKVQHCFLYCALYPE 349 (359)
Q Consensus 293 ~~~~~~~w~~~l~~~~~~~~~~~~-~~~~~~~~l~~-sy~~L~~~~~k~cf~~~s~fp~ 349 (359)
..... ....... +.. ....+...+.- .++.| |+..+..+...|+++.
T Consensus 231 ~~~~~--~~~~~~~-------~~~~~~~~~~~~l~~~v~~~l-~~~~~~~l~~~a~~~~ 279 (903)
T PRK04841 231 QNNSS--LHDSARR-------LAGINASHLSDYLVEEVLDNV-DLETRHFLLRCSVLRS 279 (903)
T ss_pred hCCCc--hhhhhHh-------hcCCCchhHHHHHHHHHHhcC-CHHHHHHHHHhccccc
Confidence 43211 0011111 111 12345554443 37899 8899999999999873
No 5
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.39 E-value=1.5e-10 Score=104.76 Aligned_cols=160 Identities=20% Similarity=0.265 Sum_probs=107.2
Q ss_pred CCCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHH
Q 038454 127 GDKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAMALKLSLTEDEDKVSRARRLLGK 206 (359)
Q Consensus 127 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 206 (359)
..+.+++.|+|++|+|||||++.+++.+ .. ..+ ..+|+ +....+..+++..|+..++.+.. ..+.......+...
T Consensus 40 ~~~~~~~~l~G~~G~GKTtl~~~l~~~l-~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~-~~~~~~~~~~l~~~ 114 (269)
T TIGR03015 40 SQREGFILITGEVGAGKTTLIRNLLKRL-DQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETE-GRDKAALLRELEDF 114 (269)
T ss_pred hcCCCEEEEEcCCCCCHHHHHHHHHHhc-CC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCC-CCCHHHHHHHHHHH
Confidence 3445789999999999999999999883 21 111 12333 33345778899999999887543 23333334444333
Q ss_pred ----HhcCCcEEEEEecC-------------------CCC---eEEEeec-----cc---c--------eeeeecCCCCh
Q 038454 207 ----LKAKKKFVLILDDI-------------------DNH---TFCWGLR-----SM---G--------CEEVRVPPLSK 244 (359)
Q Consensus 207 ----l~~~k~~LlVlDdv-------------------~~g---~ilvTtr-----~~---~--------~~~~~l~~L~~ 244 (359)
...+++.+||+||+ ..+ .|++|.. .. . ...+.+++|+.
T Consensus 115 l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~ 194 (269)
T TIGR03015 115 LIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDR 194 (269)
T ss_pred HHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCCH
Confidence 22348899999998 112 3455544 00 0 23478999999
Q ss_pred HHHHHHHHHhhcCCCCC-CCCchHHHHHHHHHHcCCchhHHHHHHHhh
Q 038454 245 EEALNLFLDKVGRNILH-VPTLNEEIINSVVEECAGLQLAIFTVVGCM 291 (359)
Q Consensus 245 ~ea~~lf~~~~~~~~~~-~~~~~~~~~~~i~~~c~g~Plai~~~~~~L 291 (359)
+|..+++...+...+.. ...-..+..+.|++.|+|.|..|..++..+
T Consensus 195 ~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 195 EETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 99999988776433211 122346788999999999999999998876
No 6
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.36 E-value=3.3e-10 Score=108.27 Aligned_cols=197 Identities=17% Similarity=0.170 Sum_probs=127.8
Q ss_pred CcccccccchHHHHHHHHHHh----cCCCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHH
Q 038454 105 PTTTLVGENTKKIVKKVWEDL----MGDKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQA 180 (359)
Q Consensus 105 ~~~~~vGr~~~~~~~~l~~~l----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 180 (359)
.++.++||+. ++++|...+ .++....+.|+|++|+|||++++.+++++ ......-..+++++....+...++.
T Consensus 28 ~P~~l~~Re~--e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l-~~~~~~~~~v~in~~~~~~~~~~~~ 104 (394)
T PRK00411 28 VPENLPHREE--QIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEEL-EEIAVKVVYVYINCQIDRTRYAIFS 104 (394)
T ss_pred cCCCCCCHHH--HHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHH-HHhcCCcEEEEEECCcCCCHHHHHH
Confidence 4567999976 777777776 33455678999999999999999999983 2222123466777777778889999
Q ss_pred HHHHHhcC-CCC-CCccHHHHHHHHHHHHhc-CCcEEEEEecC---------------------CCC---eEEEeec---
Q 038454 181 EIAMALKL-SLT-EDEDKVSRARRLLGKLKA-KKKFVLILDDI---------------------DNH---TFCWGLR--- 230 (359)
Q Consensus 181 ~i~~~l~~-~~~-~~~~~~~~~~~l~~~l~~-~k~~LlVlDdv---------------------~~g---~ilvTtr--- 230 (359)
.|+.++.. ..+ ...+.......+.+.+.. ++..+||||++ .++ .+|.++.
T Consensus 105 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~ 184 (394)
T PRK00411 105 EIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLT 184 (394)
T ss_pred HHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcc
Confidence 99999875 222 233556677777777764 35689999999 122 3555554
Q ss_pred -----------ccceeeeecCCCChHHHHHHHHHhhcCC--CCCCCCchHHHHHHHHHH----cCCchhHHHHHHHhh--
Q 038454 231 -----------SMGCEEVRVPPLSKEEALNLFLDKVGRN--ILHVPTLNEEIINSVVEE----CAGLQLAIFTVVGCM-- 291 (359)
Q Consensus 231 -----------~~~~~~~~l~~L~~~ea~~lf~~~~~~~--~~~~~~~~~~~~~~i~~~----c~g~Plai~~~~~~L-- 291 (359)
..+...+.+++++.++..+++...+... ....+ .+..+.|++. .|..+.|+.++-...
T Consensus 185 ~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~---~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~ 261 (394)
T PRK00411 185 FLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVD---DEVLDLIADLTAREHGDARVAIDLLRRAGLI 261 (394)
T ss_pred hhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCC---HhHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 1112457999999999999998876321 11122 2333334433 455777776664322
Q ss_pred ---cC--CCChhHHHHHHHHH
Q 038454 292 ---RG--VDEIHEWRNALNEL 307 (359)
Q Consensus 292 ---~~--~~~~~~w~~~l~~~ 307 (359)
++ .-+.+.+..+++..
T Consensus 262 a~~~~~~~I~~~~v~~a~~~~ 282 (394)
T PRK00411 262 AEREGSRKVTEEDVRKAYEKS 282 (394)
T ss_pred HHHcCCCCcCHHHHHHHHHHH
Confidence 11 13556666666654
No 7
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.35 E-value=7.8e-12 Score=110.20 Aligned_cols=170 Identities=22% Similarity=0.323 Sum_probs=96.6
Q ss_pred ccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHH------
Q 038454 109 LVGENTKKIVKKVWEDLMGDKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEI------ 182 (359)
Q Consensus 109 ~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i------ 182 (359)
|+||+. ++++|.+++..+....+.|+|+.|+|||+|++.+.+.. ....+ .++|+......... ....+
T Consensus 1 F~gR~~--el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~--~~~~~-~~~y~~~~~~~~~~-~~~~~~~~~~~ 74 (234)
T PF01637_consen 1 FFGREK--ELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINEL--KEKGY-KVVYIDFLEESNES-SLRSFIEETSL 74 (234)
T ss_dssp S-S-HH--HHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHC--T--EE-CCCHHCCTTBSHHH-HHHHHHHHHHH
T ss_pred CCCHHH--HHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHh--hhcCC-cEEEEecccchhhh-HHHHHHHHHHH
Confidence 689966 99999999988778899999999999999999999982 11122 34444443433222 22222
Q ss_pred ----HHHhcCCCC----------CCccHHHHHHHHHHHHhc-CCcEEEEEecC--------------------------C
Q 038454 183 ----AMALKLSLT----------EDEDKVSRARRLLGKLKA-KKKFVLILDDI--------------------------D 221 (359)
Q Consensus 183 ----~~~l~~~~~----------~~~~~~~~~~~l~~~l~~-~k~~LlVlDdv--------------------------~ 221 (359)
...+....+ ...........+.+.+.. +++++||+||+ .
T Consensus 75 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 154 (234)
T PF01637_consen 75 ADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQ 154 (234)
T ss_dssp HCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----
T ss_pred HHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhcccc
Confidence 122221111 112334445555555554 24599999999 2
Q ss_pred CC-eEEEeec------c---------cceeeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHH
Q 038454 222 NH-TFCWGLR------S---------MGCEEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIF 285 (359)
Q Consensus 222 ~g-~ilvTtr------~---------~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~ 285 (359)
.. .+++++. . .....+.+++|+.+++++++...+-.. ... +...+..++|+..+||+|..|.
T Consensus 155 ~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~-~~~~~~~~~i~~~~gG~P~~l~ 232 (234)
T PF01637_consen 155 QNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKL-PFSDEDIEEIYSLTGGNPRYLQ 232 (234)
T ss_dssp TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC--------HHHHHHHHHHHTT-HHHHH
T ss_pred CCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcc-cCCHHHHHHHHHHhCCCHHHHh
Confidence 23 4444443 1 112348999999999999999875333 212 2345667999999999999886
Q ss_pred H
Q 038454 286 T 286 (359)
Q Consensus 286 ~ 286 (359)
.
T Consensus 233 ~ 233 (234)
T PF01637_consen 233 E 233 (234)
T ss_dssp H
T ss_pred c
Confidence 4
No 8
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.31 E-value=1.1e-09 Score=103.50 Aligned_cols=178 Identities=17% Similarity=0.221 Sum_probs=118.0
Q ss_pred cccccccchHHHHHHHHHHhc----CCCccEEEEEcCCCCcHHHHHHHHHcCcccccCCC---ccEEEEEeCCCcCHHHH
Q 038454 106 TTTLVGENTKKIVKKVWEDLM----GDKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEF---SDVIWVTVSQPLDLVKL 178 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F---~~~~wv~~~~~~~~~~~ 178 (359)
|+.++||+. ++++|..++. .+....+.|+|++|+|||++++.+++.+....... -..+|+++....+...+
T Consensus 14 p~~l~gRe~--e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~ 91 (365)
T TIGR02928 14 PDRIVHRDE--QIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQV 91 (365)
T ss_pred CCCCCCcHH--HHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHH
Confidence 457999976 8888887775 34557899999999999999999998732211111 13667887777788899
Q ss_pred HHHHHHHhc---CCCC-CCccHHHHHHHHHHHHhc-CCcEEEEEecC----------------------C--CC-eEEEe
Q 038454 179 QAEIAMALK---LSLT-EDEDKVSRARRLLGKLKA-KKKFVLILDDI----------------------D--NH-TFCWG 228 (359)
Q Consensus 179 ~~~i~~~l~---~~~~-~~~~~~~~~~~l~~~l~~-~k~~LlVlDdv----------------------~--~g-~ilvT 228 (359)
+..|+.++. ...+ ...+..+....+.+.+.. +++++||||++ . .. .+|.+
T Consensus 92 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i 171 (365)
T TIGR02928 92 LVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGI 171 (365)
T ss_pred HHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEE
Confidence 999999983 3222 123445556666666643 46889999999 0 22 34444
Q ss_pred ec--------------ccceeeeecCCCChHHHHHHHHHhhcC--CCCCCCCchHHHHHHHHHHcCCchhHHH
Q 038454 229 LR--------------SMGCEEVRVPPLSKEEALNLFLDKVGR--NILHVPTLNEEIINSVVEECAGLQLAIF 285 (359)
Q Consensus 229 tr--------------~~~~~~~~l~~L~~~ea~~lf~~~~~~--~~~~~~~~~~~~~~~i~~~c~g~Plai~ 285 (359)
|. ......+.++|++.++..+++...+.. .....+++..+.+..++..+.|.|-.+.
T Consensus 172 ~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al 244 (365)
T TIGR02928 172 SNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAI 244 (365)
T ss_pred ECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHH
Confidence 43 111235799999999999999887631 1111233333455567777778885443
No 9
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.23 E-value=1.7e-09 Score=107.26 Aligned_cols=221 Identities=18% Similarity=0.242 Sum_probs=150.5
Q ss_pred ccCCcccccccchHHHHHHHHHHhcCC-CccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCC-cCHHHHH
Q 038454 102 LILPTTTLVGENTKKIVKKVWEDLMGD-KVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQP-LDLVKLQ 179 (359)
Q Consensus 102 ~~~~~~~~vGr~~~~~~~~l~~~l~~~-~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~-~~~~~~~ 179 (359)
.|.++.+.|-|. .|.+.|.+. +.+.+.|..++|.|||||+.+.+.. . ..=..+.|.++.+. .++..++
T Consensus 14 ~P~~~~~~v~R~------rL~~~L~~~~~~RL~li~APAGfGKttl~aq~~~~---~-~~~~~v~Wlslde~dndp~rF~ 83 (894)
T COG2909 14 RPVRPDNYVVRP------RLLDRLRRANDYRLILISAPAGFGKTTLLAQWREL---A-ADGAAVAWLSLDESDNDPARFL 83 (894)
T ss_pred CCCCcccccccH------HHHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHHh---c-CcccceeEeecCCccCCHHHHH
Confidence 444456667664 455556554 7899999999999999999999764 1 22235999998764 5788999
Q ss_pred HHHHHHhcCCCCC-------------CccHHHHHHHHHHHHhc-CCcEEEEEecC-------------------CCC-eE
Q 038454 180 AEIAMALKLSLTE-------------DEDKVSRARRLLGKLKA-KKKFVLILDDI-------------------DNH-TF 225 (359)
Q Consensus 180 ~~i~~~l~~~~~~-------------~~~~~~~~~~l~~~l~~-~k~~LlVlDdv-------------------~~g-~i 225 (359)
..++..++.-.+. ..+....+..+..-+.. .++.+|||||. .++ .+
T Consensus 84 ~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~l 163 (894)
T COG2909 84 SYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTL 163 (894)
T ss_pred HHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEE
Confidence 9999988743221 22344455566655544 47899999999 567 99
Q ss_pred EEeec---ccce-------eeeecC----CCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHHHHhh
Q 038454 226 CWGLR---SMGC-------EEVRVP----PLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTVVGCM 291 (359)
Q Consensus 226 lvTtr---~~~~-------~~~~l~----~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~L 291 (359)
++||| ..+. ..++++ .|+.+|+.++|..... .+-....++.+.+..+|.+-|+..++=.+
T Consensus 164 vv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~------l~Ld~~~~~~L~~~teGW~~al~L~aLa~ 237 (894)
T COG2909 164 VVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGS------LPLDAADLKALYDRTEGWAAALQLIALAL 237 (894)
T ss_pred EEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCC------CCCChHHHHHHHhhcccHHHHHHHHHHHc
Confidence 99999 1111 123333 6899999999988742 22235667889999999999999998888
Q ss_pred cCCCChhHHHHHHHHHhhcccccCCChhhHhhH-HHHhhhcCCCcchhHHHhhccccCC
Q 038454 292 RGVDEIHEWRNALNELRGLVRSFSGINADVLGR-LEFSYLRLKDKKVQHCFLYCALYPE 349 (359)
Q Consensus 292 ~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~-l~~sy~~L~~~~~k~cf~~~s~fp~ 349 (359)
+.+.+.+.-...+ ++....+..- ..--++.| |+++|..++-||+++.
T Consensus 238 ~~~~~~~q~~~~L----------sG~~~~l~dYL~eeVld~L-p~~l~~FLl~~svl~~ 285 (894)
T COG2909 238 RNNTSAEQSLRGL----------SGAASHLSDYLVEEVLDRL-PPELRDFLLQTSVLSR 285 (894)
T ss_pred cCCCcHHHHhhhc----------cchHHHHHHHHHHHHHhcC-CHHHHHHHHHHHhHHH
Confidence 8544443322222 2222222222 22346778 8899999999998864
No 10
>PF05729 NACHT: NACHT domain
Probab=99.15 E-value=4e-10 Score=93.82 Aligned_cols=118 Identities=19% Similarity=0.238 Sum_probs=77.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCcccccCC----CccEEEEEeCCCcCHH---HHHHHHHHHhcCCCCCCccHHHHHHHH
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNRPQEETNE----FSDVIWVTVSQPLDLV---KLQAEIAMALKLSLTEDEDKVSRARRL 203 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~----F~~~~wv~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~l 203 (359)
+++.|+|.+|+||||+++.++..+.. ... +...+|++.+...... .+...|..+...... .... .+
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~---~~~~---~~ 73 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAE-EEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIA---PIEE---LL 73 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHh-cCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchh---hhHH---HH
Confidence 57999999999999999999988422 222 4456677765543322 333334333332211 1111 23
Q ss_pred HHHHhcCCcEEEEEecC---------------------------CCC-eEEEeecc----------cceeeeecCCCChH
Q 038454 204 LGKLKAKKKFVLILDDI---------------------------DNH-TFCWGLRS----------MGCEEVRVPPLSKE 245 (359)
Q Consensus 204 ~~~l~~~k~~LlVlDdv---------------------------~~g-~ilvTtr~----------~~~~~~~l~~L~~~ 245 (359)
...+...++++||+|++ .++ ++++|+|. .....+.+.+|+++
T Consensus 74 ~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~ 153 (166)
T PF05729_consen 74 QELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEE 153 (166)
T ss_pred HHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHH
Confidence 33333459999999999 356 99999991 11235899999999
Q ss_pred HHHHHHHHhh
Q 038454 246 EALNLFLDKV 255 (359)
Q Consensus 246 ea~~lf~~~~ 255 (359)
+..+++.++.
T Consensus 154 ~~~~~~~~~f 163 (166)
T PF05729_consen 154 DIKQYLRKYF 163 (166)
T ss_pred HHHHHHHHHh
Confidence 9999998763
No 11
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.05 E-value=3.4e-09 Score=97.67 Aligned_cols=170 Identities=11% Similarity=0.060 Sum_probs=102.8
Q ss_pred ccccccchHHHHHHHHHHhc-----CCCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHH
Q 038454 107 TTLVGENTKKIVKKVWEDLM-----GDKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAE 181 (359)
Q Consensus 107 ~~~vGr~~~~~~~~l~~~l~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 181 (359)
..|+|++. .++.|..++. ......+.++|++|+|||+||+.+++.+ ...+ ..+..+...... .+..
T Consensus 4 ~~~iG~~~--~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~---~~~~---~~~~~~~~~~~~-~l~~ 74 (305)
T TIGR00635 4 AEFIGQEK--VKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEM---GVNL---KITSGPALEKPG-DLAA 74 (305)
T ss_pred HHHcCHHH--HHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHh---CCCE---EEeccchhcCch-hHHH
Confidence 46899976 7777777775 3445678999999999999999999983 2222 122221111222 2223
Q ss_pred HHHHhcCCCC------CCccHHHHHHHHHHHHhcCCcEEEEEecC---------CC-C-eEEEeecc--------cce-e
Q 038454 182 IAMALKLSLT------EDEDKVSRARRLLGKLKAKKKFVLILDDI---------DN-H-TFCWGLRS--------MGC-E 235 (359)
Q Consensus 182 i~~~l~~~~~------~~~~~~~~~~~l~~~l~~~k~~LlVlDdv---------~~-g-~ilvTtr~--------~~~-~ 235 (359)
.+..++...- +..+ ......+...+.+ .+..+|+|+. .+ . -|..||+. ..+ .
T Consensus 75 ~l~~~~~~~vl~iDEi~~l~-~~~~e~l~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~sR~~~ 152 (305)
T TIGR00635 75 ILTNLEEGDVLFIDEIHRLS-PAVEELLYPAMED-FRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRDRFGI 152 (305)
T ss_pred HHHhcccCCEEEEehHhhhC-HHHHHHhhHHHhh-hheeeeeccCccccceeecCCCeEEEEecCCccccCHHHHhhcce
Confidence 3333332110 0011 1223445556666 6777888775 22 3 33445551 112 3
Q ss_pred eeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHHHHh
Q 038454 236 EVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTVVGC 290 (359)
Q Consensus 236 ~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~ 290 (359)
.+.+++++.++..+++.+.+..... .-..+....|++.|+|.|-.+..++..
T Consensus 153 ~~~l~~l~~~e~~~il~~~~~~~~~---~~~~~al~~ia~~~~G~pR~~~~ll~~ 204 (305)
T TIGR00635 153 ILRLEFYTVEELAEIVSRSAGLLNV---EIEPEAALEIARRSRGTPRIANRLLRR 204 (305)
T ss_pred EEEeCCCCHHHHHHHHHHHHHHhCC---CcCHHHHHHHHHHhCCCcchHHHHHHH
Confidence 5789999999999999988754322 223567788999999999776555543
No 12
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.04 E-value=5e-09 Score=97.52 Aligned_cols=172 Identities=13% Similarity=0.070 Sum_probs=102.7
Q ss_pred cccccccchHHHHHHHHHHhc-----CCCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHH
Q 038454 106 TTTLVGENTKKIVKKVWEDLM-----GDKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQA 180 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 180 (359)
-..|+|++. .++.+..++. ......+.++|++|+|||+||+.+++.+ ...+ .++... .......+.
T Consensus 24 ~~~~vG~~~--~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l---~~~~---~~~~~~-~~~~~~~l~ 94 (328)
T PRK00080 24 LDEFIGQEK--VKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM---GVNI---RITSGP-ALEKPGDLA 94 (328)
T ss_pred HHHhcCcHH--HHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh---CCCe---EEEecc-cccChHHHH
Confidence 467999976 6666655543 3345688999999999999999999982 2221 122221 112222334
Q ss_pred HHHHHhcCCCC----CCcc-HHHHHHHHHHHHhcCCcEEEEEecC---------CCC-eEE-Eeec--c------cce-e
Q 038454 181 EIAMALKLSLT----EDED-KVSRARRLLGKLKAKKKFVLILDDI---------DNH-TFC-WGLR--S------MGC-E 235 (359)
Q Consensus 181 ~i~~~l~~~~~----~~~~-~~~~~~~l~~~l~~~k~~LlVlDdv---------~~g-~il-vTtr--~------~~~-~ 235 (359)
.++..+....- +... .......+...+.+ .+..+++|+. -+. .++ .|++ . ..+ .
T Consensus 95 ~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~-~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~sRf~~ 173 (328)
T PRK00080 95 AILTNLEEGDVLFIDEIHRLSPVVEEILYPAMED-FRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRDRFGI 173 (328)
T ss_pred HHHHhcccCCEEEEecHhhcchHHHHHHHHHHHh-cceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHHhcCe
Confidence 44444432110 0000 01122334555555 6777888875 123 334 4555 1 112 3
Q ss_pred eeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHHHHh
Q 038454 236 EVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTVVGC 290 (359)
Q Consensus 236 ~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~ 290 (359)
.+.+++++.++..+++.+.+...+. .-..+.+..|++.|+|.|-.+..+...
T Consensus 174 ~~~l~~~~~~e~~~il~~~~~~~~~---~~~~~~~~~ia~~~~G~pR~a~~~l~~ 225 (328)
T PRK00080 174 VQRLEFYTVEELEKIVKRSARILGV---EIDEEGALEIARRSRGTPRIANRLLRR 225 (328)
T ss_pred eeecCCCCHHHHHHHHHHHHHHcCC---CcCHHHHHHHHHHcCCCchHHHHHHHH
Confidence 5899999999999999988754332 223467899999999999655555543
No 13
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.97 E-value=3.6e-08 Score=94.59 Aligned_cols=158 Identities=17% Similarity=0.267 Sum_probs=97.9
Q ss_pred cccccccchHHHHHH---HHHHhcCCCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHH
Q 038454 106 TTTLVGENTKKIVKK---VWEDLMGDKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEI 182 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~---l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 182 (359)
-+.++|++. .+.. +..++..+....+.++|++|+||||||+.+++. ....| +.++....-..-++.+
T Consensus 11 l~d~vGq~~--~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~---~~~~~-----~~l~a~~~~~~~ir~i 80 (413)
T PRK13342 11 LDEVVGQEH--LLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGA---TDAPF-----EALSAVTSGVKDLREV 80 (413)
T ss_pred HHHhcCcHH--HhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHH---hCCCE-----EEEecccccHHHHHHH
Confidence 456888865 5444 777777777888999999999999999999987 22332 2222211111111112
Q ss_pred HHHhcCCCCCCccHHHHHHHHHHHHhcCCcEEEEEecC---------------CCC-eEEE-e-ec----------ccce
Q 038454 183 AMALKLSLTEDEDKVSRARRLLGKLKAKKKFVLILDDI---------------DNH-TFCW-G-LR----------SMGC 234 (359)
Q Consensus 183 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv---------------~~g-~ilv-T-tr----------~~~~ 234 (359)
..........+++.+|++|++ ..| .+++ + |. ...+
T Consensus 81 -----------------i~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~~~iilI~att~n~~~~l~~aL~SR~ 143 (413)
T PRK13342 81 -----------------IEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVEDGTITLIGATTENPSFEVNPALLSRA 143 (413)
T ss_pred -----------------HHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhcCcEEEEEeCCCChhhhccHHHhccc
Confidence 122222122237889999999 345 4444 2 32 1234
Q ss_pred eeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHHHHh
Q 038454 235 EEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTVVGC 290 (359)
Q Consensus 235 ~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~ 290 (359)
..+.+.+++.++...++.+.+.........-..+..+.|++.|+|.|..+..+...
T Consensus 144 ~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~ 199 (413)
T PRK13342 144 QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLEL 199 (413)
T ss_pred eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 57899999999999999886532111011233567788999999999777555443
No 14
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.93 E-value=1.2e-07 Score=87.10 Aligned_cols=201 Identities=17% Similarity=0.183 Sum_probs=113.1
Q ss_pred ccccccch-HHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHHH
Q 038454 107 TTLVGENT-KKIVKKVWEDLMGDKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAMA 185 (359)
Q Consensus 107 ~~~vGr~~-~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~ 185 (359)
+.+||.+. -.+-.-|...+..+.+....+||++|+||||||+.+++. ....|. .++...+-
T Consensus 24 de~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~---~~~~f~-----~~sAv~~g---------- 85 (436)
T COG2256 24 DEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGT---TNAAFE-----ALSAVTSG---------- 85 (436)
T ss_pred HHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHh---hCCceE-----Eecccccc----------
Confidence 45666643 001124555667788999999999999999999999987 334442 22222111
Q ss_pred hcCCCCCCccHHHHHHHHHHHHhcCCcEEEEEecC---------------CCC-eEEEe--ec----------ccceeee
Q 038454 186 LKLSLTEDEDKVSRARRLLGKLKAKKKFVLILDDI---------------DNH-TFCWG--LR----------SMGCEEV 237 (359)
Q Consensus 186 l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv---------------~~g-~ilvT--tr----------~~~~~~~ 237 (359)
..+....++.-++....+++.+|++|.| .+| -++|. |. ...+..+
T Consensus 86 -------vkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~G~iilIGATTENPsF~ln~ALlSR~~vf 158 (436)
T COG2256 86 -------VKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVENGTIILIGATTENPSFELNPALLSRARVF 158 (436)
T ss_pred -------HHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhhhhhhhhhcCCeEEEEeccCCCCCeeecHHHhhhhhee
Confidence 1222333333333333348999999999 678 55553 33 2345679
Q ss_pred ecCCCChHHHHHHHHHhhcCCCCC----CCCchHHHHHHHHHHcCCchhHHHHHH---HhhcCCC---ChhHHHHHHHHH
Q 038454 238 RVPPLSKEEALNLFLDKVGRNILH----VPTLNEEIINSVVEECAGLQLAIFTVV---GCMRGVD---EIHEWRNALNEL 307 (359)
Q Consensus 238 ~l~~L~~~ea~~lf~~~~~~~~~~----~~~~~~~~~~~i~~~c~g~Plai~~~~---~~L~~~~---~~~~w~~~l~~~ 307 (359)
.+++|+.++-.+++.+.+...... ...-.++....++..++|---++-... ..+.... ..+..++.+++-
T Consensus 159 ~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~~~l~~~ 238 (436)
T COG2256 159 ELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELLEEILQRR 238 (436)
T ss_pred eeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHHHHHHhhh
Confidence 999999999999998844222111 111234566778888888654433222 2222211 244444444443
Q ss_pred hhcccccCCChhhHhhHHHHhhhcC
Q 038454 308 RGLVRSFSGINADVLGRLEFSYLRL 332 (359)
Q Consensus 308 ~~~~~~~~~~~~~~~~~l~~sy~~L 332 (359)
........+..-++...|.-|...=
T Consensus 239 ~~~~Dk~gD~hYdliSA~hKSvRGS 263 (436)
T COG2256 239 SARFDKDGDAHYDLISALHKSVRGS 263 (436)
T ss_pred hhccCCCcchHHHHHHHHHHhhccC
Confidence 2211111222334555555555544
No 15
>PRK06893 DNA replication initiation factor; Validated
Probab=98.93 E-value=3.9e-08 Score=86.66 Aligned_cols=153 Identities=14% Similarity=0.261 Sum_probs=90.9
Q ss_pred ccccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHHHh
Q 038454 107 TTLVGENTKKIVKKVWEDLMGDKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAMAL 186 (359)
Q Consensus 107 ~~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l 186 (359)
++|+|-+.......+.........+.+.++|++|+|||+|++.+++.+ ......+.|+++.... ....
T Consensus 16 d~f~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~---~~~~~~~~y~~~~~~~---~~~~------ 83 (229)
T PRK06893 16 DNFYADNNLLLLDSLRKNFIDLQQPFFYIWGGKSSGKSHLLKAVSNHY---LLNQRTAIYIPLSKSQ---YFSP------ 83 (229)
T ss_pred cccccCChHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHH---HHcCCCeEEeeHHHhh---hhhH------
Confidence 456654432233333333333344678999999999999999999983 2222345677653210 0000
Q ss_pred cCCCCCCccHHHHHHHHHHHHhcCCcEEEEEecC---------------------CCC-eEE-Eeec-------------
Q 038454 187 KLSLTEDEDKVSRARRLLGKLKAKKKFVLILDDI---------------------DNH-TFC-WGLR------------- 230 (359)
Q Consensus 187 ~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv---------------------~~g-~il-vTtr------------- 230 (359)
.+.+.+. +.-+|+|||+ ..| .++ +|++
T Consensus 84 ---------------~~~~~~~--~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L 146 (229)
T PRK06893 84 ---------------AVLENLE--QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDL 146 (229)
T ss_pred ---------------HHHhhcc--cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhH
Confidence 1111121 2347788887 234 444 4444
Q ss_pred --cc-ceeeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHHHHhh
Q 038454 231 --SM-GCEEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTVVGCM 291 (359)
Q Consensus 231 --~~-~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~L 291 (359)
+. ....+++++++.++.++++.+.+...+. .-..+...-|++.+.|..-.+..+-..|
T Consensus 147 ~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l---~l~~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 147 ASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGI---ELSDEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred HHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 11 1236899999999999999998865432 2235677888998887776665444433
No 16
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.89 E-value=6.3e-09 Score=95.82 Aligned_cols=214 Identities=21% Similarity=0.253 Sum_probs=151.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCc-cEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHh
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFS-DVIWVTVSQPLDLVKLQAEIAMALKLSLTEDEDKVSRARRLLGKLK 208 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 208 (359)
.+.+.++|.|||||||++-++.. . ...|. .+.++....-.+...+.-.....++....+ .+.....+.....
T Consensus 14 ~RlvtL~g~ggvgkttl~~~~a~-~---~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~---g~~~~~~~~~~~~ 86 (414)
T COG3903 14 LRLVTLTGAGGVGKTTLALQAAH-A---ASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQP---GDSAVDTLVRRIG 86 (414)
T ss_pred hheeeeeccCccceehhhhhhHh-H---hhhcccceeeeeccccCchhHhHHHHHhhccccccc---chHHHHHHHHHHh
Confidence 47899999999999999999887 1 34564 566676666667777777777767775432 2333445556666
Q ss_pred cCCcEEEEEecC-----------------CCC-eEEEeec----ccceeeeecCCCChH-HHHHHHHHhhcCCC--CCCC
Q 038454 209 AKKKFVLILDDI-----------------DNH-TFCWGLR----SMGCEEVRVPPLSKE-EALNLFLDKVGRNI--LHVP 263 (359)
Q Consensus 209 ~~k~~LlVlDdv-----------------~~g-~ilvTtr----~~~~~~~~l~~L~~~-ea~~lf~~~~~~~~--~~~~ 263 (359)
. ++.++|+||. .+. .++.|+| ..+-..+.+++|+.- ++.++|...+.... -...
T Consensus 87 ~-rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l~ 165 (414)
T COG3903 87 D-RRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILVAGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWLT 165 (414)
T ss_pred h-hhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcccccccccCCccccCCchhHHHHHHHHHhccceeec
Confidence 6 9999999998 333 8889999 223356788888865 79999887764321 1233
Q ss_pred CchHHHHHHHHHHcCCchhHHHHHHHhhcCCCChhHHHHHHHHHhhccccc----CCChhhHhhHHHHhhhcCCCcchhH
Q 038454 264 TLNEEIINSVVEECAGLQLAIFTVVGCMRGVDEIHEWRNALNELRGLVRSF----SGINADVLGRLEFSYLRLKDKKVQH 339 (359)
Q Consensus 264 ~~~~~~~~~i~~~c~g~Plai~~~~~~L~~~~~~~~w~~~l~~~~~~~~~~----~~~~~~~~~~l~~sy~~L~~~~~k~ 339 (359)
......+.+|.+...|.|++|...++..+. ....+....++.--.....- ..........+.+||.-| ....+-
T Consensus 166 ~~~~a~v~~icr~ldg~~laielaaarv~s-l~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lL-tgwe~~ 243 (414)
T COG3903 166 DDNAAAVAEICRRLDGIPLAIELAAARVRS-LSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALL-TGWERA 243 (414)
T ss_pred CCchHHHHHHHHHhhcchHHHHHHHHHHHh-cCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhh-hhHHHH
Confidence 445678899999999999999999999887 55555444444322111111 112356788999999999 888899
Q ss_pred HHhhccccCCCCcc
Q 038454 340 CFLYCALYPEDFAI 353 (359)
Q Consensus 340 cf~~~s~fp~~~~i 353 (359)
.|.-++.|...|.-
T Consensus 244 ~~~rLa~~~g~f~~ 257 (414)
T COG3903 244 LFGRLAVFVGGFDL 257 (414)
T ss_pred Hhcchhhhhhhhcc
Confidence 99999999887764
No 17
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.85 E-value=8.8e-08 Score=84.23 Aligned_cols=151 Identities=15% Similarity=0.286 Sum_probs=93.5
Q ss_pred cccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHHHhc
Q 038454 108 TLVGENTKKIVKKVWEDLMGDKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAMALK 187 (359)
Q Consensus 108 ~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~ 187 (359)
+|++......++.+..++.......+.|+|++|+|||+||+.+++.. .......++++++.-.+. ..
T Consensus 16 ~~~~~~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~---~~~~~~~~~i~~~~~~~~---~~------- 82 (226)
T TIGR03420 16 NFYAGGNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAA---EERGKSAIYLPLAELAQA---DP------- 82 (226)
T ss_pred CcCcCCcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHH---HhcCCcEEEEeHHHHHHh---HH-------
Confidence 45532224567777777666667889999999999999999999872 222334556654332110 00
Q ss_pred CCCCCCccHHHHHHHHHHHHhcCCcEEEEEecC---------------------CCC-eEEEeecc--------------
Q 038454 188 LSLTEDEDKVSRARRLLGKLKAKKKFVLILDDI---------------------DNH-TFCWGLRS-------------- 231 (359)
Q Consensus 188 ~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv---------------------~~g-~ilvTtr~-------------- 231 (359)
.+...+. +.-+||+||+ ..+ .+++||+.
T Consensus 83 --------------~~~~~~~--~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~ 146 (226)
T TIGR03420 83 --------------EVLEGLE--QADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRT 146 (226)
T ss_pred --------------HHHhhcc--cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHH
Confidence 1111122 2237778887 234 78888761
Q ss_pred -cc-eeeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHHHHh
Q 038454 232 -MG-CEEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTVVGC 290 (359)
Q Consensus 232 -~~-~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~ 290 (359)
.. ...+++++++.++...++...+-..+. .-..+..+.|+..+.|.|..+..+...
T Consensus 147 r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~---~~~~~~l~~L~~~~~gn~r~L~~~l~~ 204 (226)
T TIGR03420 147 RLAWGLVFQLPPLSDEEKIAALQSRAARRGL---QLPDEVADYLLRHGSRDMGSLMALLDA 204 (226)
T ss_pred HHhcCeeEecCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 00 235889999999989988775432221 122456677888888888877665443
No 18
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=4.9e-07 Score=84.74 Aligned_cols=178 Identities=20% Similarity=0.292 Sum_probs=122.5
Q ss_pred cccccccchHHHHHHHHHHh----cCCCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHH
Q 038454 106 TTTLVGENTKKIVKKVWEDL----MGDKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAE 181 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 181 (359)
|..+.+|+. +++++...+ .++.+.-+.|+|.+|+|||+.++.+.+.+........ +++|++....+..+++..
T Consensus 16 P~~l~~Re~--ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~-~~yINc~~~~t~~~i~~~ 92 (366)
T COG1474 16 PEELPHREE--EINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVE-VVYINCLELRTPYQVLSK 92 (366)
T ss_pred cccccccHH--HHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCc-eEEEeeeeCCCHHHHHHH
Confidence 445889977 666666555 4455566999999999999999999998433222232 789999999999999999
Q ss_pred HHHHhcCCCCCCccHHHHHHHHHHHHhc-CCcEEEEEecC-------------------CCC-eE--EEeec--------
Q 038454 182 IAMALKLSLTEDEDKVSRARRLLGKLKA-KKKFVLILDDI-------------------DNH-TF--CWGLR-------- 230 (359)
Q Consensus 182 i~~~l~~~~~~~~~~~~~~~~l~~~l~~-~k~~LlVlDdv-------------------~~g-~i--lvTtr-------- 230 (359)
|+++++..........+....+.+.+.. ++.+++|||++ ..+ +| +..+.
T Consensus 93 i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~l 172 (366)
T COG1474 93 ILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYL 172 (366)
T ss_pred HHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHh
Confidence 9999986555566777777888887765 57899999999 112 22 22332
Q ss_pred ------ccceeeeecCCCChHHHHHHHHHhh---cCCCCCCCCchHHHHHHHHHHcCC-chhHHHHH
Q 038454 231 ------SMGCEEVRVPPLSKEEALNLFLDKV---GRNILHVPTLNEEIINSVVEECAG-LQLAIFTV 287 (359)
Q Consensus 231 ------~~~~~~~~l~~L~~~ea~~lf~~~~---~~~~~~~~~~~~~~~~~i~~~c~g-~Plai~~~ 287 (359)
..+...+..+|-+.++-.+.+...+ |..+. .++..-+.+..++..-+| .=.||..+
T Consensus 173 d~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~-~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 173 DPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGV-IDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred hhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCC-cCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 2333457899999999999998876 33333 344444444444444443 44444443
No 19
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.84 E-value=8.8e-09 Score=82.37 Aligned_cols=91 Identities=22% Similarity=0.339 Sum_probs=68.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccc--cCCCccEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHH
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEE--TNEFSDVIWVTVSQPLDLVKLQAEIAMALKLSLTEDEDKVSRARRLLGKL 207 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 207 (359)
.+++.|+|.+|+|||+++..+.+.+... ...-..++|+++....+...+...|+.+++.......+.......+.+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 4789999999999999999999873110 00123477999988889999999999999987765567778888888888
Q ss_pred hcCCcEEEEEecC
Q 038454 208 KAKKKFVLILDDI 220 (359)
Q Consensus 208 ~~~k~~LlVlDdv 220 (359)
...+..+||+|++
T Consensus 84 ~~~~~~~lviDe~ 96 (131)
T PF13401_consen 84 DRRRVVLLVIDEA 96 (131)
T ss_dssp HHCTEEEEEEETT
T ss_pred HhcCCeEEEEeCh
Confidence 8845569999997
No 20
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.77 E-value=3e-07 Score=92.43 Aligned_cols=184 Identities=14% Similarity=0.103 Sum_probs=111.4
Q ss_pred cccccccchHHHHHHHHHHhc----CCC-ccEEEEEcCCCCcHHHHHHHHHcCccccc--CCCc--cEEEEEeCCCcCHH
Q 038454 106 TTTLVGENTKKIVKKVWEDLM----GDK-VTKIGVWGMGGFGKTAIMRHINNRPQEET--NEFS--DVIWVTVSQPLDLV 176 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l~----~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~~F~--~~~wv~~~~~~~~~ 176 (359)
|+.+.||+. ++++|...|. ... ..++.|+|++|+|||++++.|.+.+.... ...+ .+++|++..-.+..
T Consensus 754 PD~LPhREe--EIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~ 831 (1164)
T PTZ00112 754 PKYLPCREK--EIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPN 831 (1164)
T ss_pred CCcCCChHH--HHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHH
Confidence 467889976 7777766663 233 35678999999999999999988742211 1222 26778777777888
Q ss_pred HHHHHHHHHhcCCCC-CCccHHHHHHHHHHHHhc--CCcEEEEEecC-------------------CCC-eEEE--eec-
Q 038454 177 KLQAEIAMALKLSLT-EDEDKVSRARRLLGKLKA--KKKFVLILDDI-------------------DNH-TFCW--GLR- 230 (359)
Q Consensus 177 ~~~~~i~~~l~~~~~-~~~~~~~~~~~l~~~l~~--~k~~LlVlDdv-------------------~~g-~ilv--Ttr- 230 (359)
.++..|..+|....+ ...........+...+.. ....+||||++ ..+ ++++ .|.
T Consensus 832 sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNd 911 (1164)
T PTZ00112 832 AAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNT 911 (1164)
T ss_pred HHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCc
Confidence 899999999854332 233344555666655522 13458999999 223 4333 332
Q ss_pred -------------ccceeeeecCCCChHHHHHHHHHhhcCCCCCCCCc-hHHHHHHHHHHcCCchhHHHHHHHhh
Q 038454 231 -------------SMGCEEVRVPPLSKEEALNLFLDKVGRNILHVPTL-NEEIINSVVEECAGLQLAIFTVVGCM 291 (359)
Q Consensus 231 -------------~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~-~~~~~~~i~~~c~g~Plai~~~~~~L 291 (359)
.++...+..+|++.++-.+++..++.......++. ++-+|+.++...|-.=.||.++-.+.
T Consensus 912 lDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 912 MDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred hhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 12223477899999999999998875321112222 22233333333344455555544433
No 21
>PRK08727 hypothetical protein; Validated
Probab=98.76 E-value=3.3e-07 Score=80.96 Aligned_cols=145 Identities=14% Similarity=0.223 Sum_probs=90.6
Q ss_pred ccccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHHHh
Q 038454 107 TTLVGENTKKIVKKVWEDLMGDKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAMAL 186 (359)
Q Consensus 107 ~~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l 186 (359)
++|++.+. +.+..+...........+.|+|.+|+|||.|++.+++.. ......+.|++..+ ....+.
T Consensus 19 ~~f~~~~~-n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~---~~~~~~~~y~~~~~------~~~~~~--- 85 (233)
T PRK08727 19 DSYIAAPD-GLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAA---EQAGRSSAYLPLQA------AAGRLR--- 85 (233)
T ss_pred hhccCCcH-HHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEEeHHH------hhhhHH---
Confidence 45665443 234444443333444679999999999999999998872 22223456665422 111110
Q ss_pred cCCCCCCccHHHHHHHHHHHHhcCCcEEEEEecC---------------------CCC-eEEEeec--------------
Q 038454 187 KLSLTEDEDKVSRARRLLGKLKAKKKFVLILDDI---------------------DNH-TFCWGLR-------------- 230 (359)
Q Consensus 187 ~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv---------------------~~g-~ilvTtr-------------- 230 (359)
...+.+. +.-+||+||+ .+| .+|+||+
T Consensus 86 ---------------~~~~~l~--~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~ 148 (233)
T PRK08727 86 ---------------DALEALE--GRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLR 148 (233)
T ss_pred ---------------HHHHHHh--cCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHH
Confidence 1112222 3458899998 356 7999998
Q ss_pred -cc-ceeeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHH
Q 038454 231 -SM-GCEEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAI 284 (359)
Q Consensus 231 -~~-~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai 284 (359)
+. .+..+++++++.++-.+++.+.+...+. .-..+....|++.++|-.-.+
T Consensus 149 SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l---~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 149 SRLAQCIRIGLPVLDDVARAAVLRERAQRRGL---ALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHhcCceEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHhCCCCHHHH
Confidence 11 1346899999999999999987644322 223567788888888766555
No 22
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.76 E-value=4.3e-07 Score=84.83 Aligned_cols=176 Identities=14% Similarity=0.190 Sum_probs=101.8
Q ss_pred cccccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCc-cEEEEEeCCCcCH-HHHHH---
Q 038454 106 TTTLVGENTKKIVKKVWEDLMGDKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFS-DVIWVTVSQPLDL-VKLQA--- 180 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~-~~~wv~~~~~~~~-~~~~~--- 180 (359)
-..++|++. .++.+..++..+..+.+.++|++|+||||+|+.+++.+ ....+. ..+.++++...+. ...+.
T Consensus 14 ~~~~~g~~~--~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 89 (337)
T PRK12402 14 LEDILGQDE--VVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALAREL--YGDPWENNFTEFNVADFFDQGKKYLVEDP 89 (337)
T ss_pred HHHhcCCHH--HHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh--cCcccccceEEechhhhhhcchhhhhcCc
Confidence 367899866 88889888888877788999999999999999999873 122222 2344444321100 00000
Q ss_pred HHHHHhcCCCCCCccHHHHHHHHHHHHhc-----CCcEEEEEecC------------------CCC-eEEEeec------
Q 038454 181 EIAMALKLSLTEDEDKVSRARRLLGKLKA-----KKKFVLILDDI------------------DNH-TFCWGLR------ 230 (359)
Q Consensus 181 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~-----~k~~LlVlDdv------------------~~g-~ilvTtr------ 230 (359)
.....++...............+.+.... ..+-+||+||+ .+. ++|+|+.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~ 169 (337)
T PRK12402 90 RFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLI 169 (337)
T ss_pred chhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCc
Confidence 00000000000001111222222221111 14458999998 233 6777764
Q ss_pred ---ccceeeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHHH
Q 038454 231 ---SMGCEEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTVV 288 (359)
Q Consensus 231 ---~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~ 288 (359)
...+..+.+.+++.++...++...+...+.. -..+....+++.++|.+-.+....
T Consensus 170 ~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~---~~~~al~~l~~~~~gdlr~l~~~l 227 (337)
T PRK12402 170 PPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD---YDDDGLELIAYYAGGDLRKAILTL 227 (337)
T ss_pred hhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 1224568999999999999988876433321 235677889999988776654433
No 23
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.74 E-value=2.4e-07 Score=95.99 Aligned_cols=234 Identities=15% Similarity=0.209 Sum_probs=144.1
Q ss_pred cccccchHHHHHHHHHHhc---CCCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCc---CHHHHHHH
Q 038454 108 TLVGENTKKIVKKVWEDLM---GDKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPL---DLVKLQAE 181 (359)
Q Consensus 108 ~~vGr~~~~~~~~l~~~l~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~---~~~~~~~~ 181 (359)
+++||+. +++.|...+. .+...++.+.|.+|||||+|+++|...+.+.++.|-...+-...... ...+.+++
T Consensus 1 ~l~GRe~--ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~ 78 (849)
T COG3899 1 PLYGRET--ELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRD 78 (849)
T ss_pred CCCchHh--HHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHH
Confidence 4789977 7777777664 46677999999999999999999998843332333211121122221 13334444
Q ss_pred HHHHhcCCCC-----------------------------------------CCccHHH-----HHHHHHHHHhcCCcEEE
Q 038454 182 IAMALKLSLT-----------------------------------------EDEDKVS-----RARRLLGKLKAKKKFVL 215 (359)
Q Consensus 182 i~~~l~~~~~-----------------------------------------~~~~~~~-----~~~~l~~~l~~~k~~Ll 215 (359)
+..++..... ....... ....+.......++.++
T Consensus 79 l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi 158 (849)
T COG3899 79 LMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVI 158 (849)
T ss_pred HHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEE
Confidence 4443311000 0001111 12223333344479999
Q ss_pred EEecC------------------C-------CCeEEEeec---------ccceeeeecCCCChHHHHHHHHHhhcCCCCC
Q 038454 216 ILDDI------------------D-------NHTFCWGLR---------SMGCEEVRVPPLSKEEALNLFLDKVGRNILH 261 (359)
Q Consensus 216 VlDdv------------------~-------~g~ilvTtr---------~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~ 261 (359)
|+||+ . +.-.+.|.+ ......+.|.||+..+...+........
T Consensus 159 ~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~--- 235 (849)
T COG3899 159 VLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCT--- 235 (849)
T ss_pred EEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCc---
Confidence 99999 1 112222223 1223679999999999999998886442
Q ss_pred CCCchHHHHHHHHHHcCCchhHHHHHHHhhcCC------CChhHHHHHHHHHhhcccccCCChhhHhhHHHHhhhcCCCc
Q 038454 262 VPTLNEEIINSVVEECAGLQLAIFTVVGCMRGV------DEIHEWRNALNELRGLVRSFSGINADVLGRLEFSYLRLKDK 335 (359)
Q Consensus 262 ~~~~~~~~~~~i~~~c~g~Plai~~~~~~L~~~------~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~ 335 (359)
.....+..+.|+++..|+|+.+..+-..+..+ .+...|..-..++. ..+..+++...+..-.+.| |.
T Consensus 236 -~~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~-----~~~~~~~vv~~l~~rl~kL-~~ 308 (849)
T COG3899 236 -KLLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLG-----ILATTDAVVEFLAARLQKL-PG 308 (849)
T ss_pred -ccccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcC-----CchhhHHHHHHHHHHHhcC-CH
Confidence 22345778899999999999999998888662 33344443333322 1222334666788889999 88
Q ss_pred chhHHHhhccccCCCCcc
Q 038454 336 KVQHCFLYCALYPEDFAI 353 (359)
Q Consensus 336 ~~k~cf~~~s~fp~~~~i 353 (359)
..|..+...|++-..|..
T Consensus 309 ~t~~Vl~~AA~iG~~F~l 326 (849)
T COG3899 309 TTREVLKAAACIGNRFDL 326 (849)
T ss_pred HHHHHHHHHHHhCccCCH
Confidence 889988888887765543
No 24
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.73 E-value=3.1e-08 Score=87.89 Aligned_cols=90 Identities=17% Similarity=0.142 Sum_probs=61.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCC--cCHHHHHHHHHHHhcCCCCCCccHH------HHH
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQP--LDLVKLQAEIAMALKLSLTEDEDKV------SRA 200 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~------~~~ 200 (359)
.-..++|+|++|+|||||++.+++.+ ...+|+.++|+.+... +++.++++.+...+-....+..... ...
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l--~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~ 92 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAI--TKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVL 92 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc--ccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHH
Confidence 34679999999999999999999984 2348999999997665 7899999998443322211111111 112
Q ss_pred HHHHHHHhcCCcEEEEEecC
Q 038454 201 RRLLGKLKAKKKFVLILDDI 220 (359)
Q Consensus 201 ~~l~~~l~~~k~~LlVlDdv 220 (359)
.........+++++|++|++
T Consensus 93 ~~a~~~~~~G~~vll~iDei 112 (249)
T cd01128 93 EKAKRLVEHGKDVVILLDSI 112 (249)
T ss_pred HHHHHHHHCCCCEEEEEECH
Confidence 22222223359999999999
No 25
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.72 E-value=2.8e-07 Score=83.46 Aligned_cols=142 Identities=16% Similarity=0.231 Sum_probs=92.5
Q ss_pred HHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHH
Q 038454 120 KVWEDLMGDKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAMALKLSLTEDEDKVSR 199 (359)
Q Consensus 120 ~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 199 (359)
-|.+.+..+.++.+.+||++|+||||||+.+... . +.+ ...||..|....-..-++.|.++-..
T Consensus 152 llrs~ieq~~ipSmIlWGppG~GKTtlArlia~t-s--k~~--SyrfvelSAt~a~t~dvR~ife~aq~----------- 215 (554)
T KOG2028|consen 152 LLRSLIEQNRIPSMILWGPPGTGKTTLARLIAST-S--KKH--SYRFVELSATNAKTNDVRDIFEQAQN----------- 215 (554)
T ss_pred HHHHHHHcCCCCceEEecCCCCchHHHHHHHHhh-c--CCC--ceEEEEEeccccchHHHHHHHHHHHH-----------
Confidence 4556667888999999999999999999999987 2 222 15677776654333333444433211
Q ss_pred HHHHHHHHhcCCcEEEEEecC---------------CCC-eEEE--eec----------ccceeeeecCCCChHHHHHHH
Q 038454 200 ARRLLGKLKAKKKFVLILDDI---------------DNH-TFCW--GLR----------SMGCEEVRVPPLSKEEALNLF 251 (359)
Q Consensus 200 ~~~l~~~l~~~k~~LlVlDdv---------------~~g-~ilv--Ttr----------~~~~~~~~l~~L~~~ea~~lf 251 (359)
...+.. +|.+|.+|.| .+| -++| ||. ...|..+.|++|+.++...++
T Consensus 216 ----~~~l~k-rkTilFiDEiHRFNksQQD~fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL 290 (554)
T KOG2028|consen 216 ----EKSLTK-RKTILFIDEIHRFNKSQQDTFLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTIL 290 (554)
T ss_pred ----HHhhhc-ceeEEEeHHhhhhhhhhhhcccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHH
Confidence 112334 8999999999 567 4444 343 234678999999999999998
Q ss_pred HHhh--cCC-CC---CCCC----chHHHHHHHHHHcCCchh
Q 038454 252 LDKV--GRN-IL---HVPT----LNEEIINSVVEECAGLQL 282 (359)
Q Consensus 252 ~~~~--~~~-~~---~~~~----~~~~~~~~i~~~c~g~Pl 282 (359)
.+-. .+. .. ..+. -...+.+-++..|.|-.-
T Consensus 291 ~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 291 MRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred HHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 8733 111 11 1111 234566777888888653
No 26
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.69 E-value=6.8e-07 Score=79.07 Aligned_cols=149 Identities=13% Similarity=0.181 Sum_probs=91.9
Q ss_pred cccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHHHhc
Q 038454 108 TLVGENTKKIVKKVWEDLMGDKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAMALK 187 (359)
Q Consensus 108 ~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~ 187 (359)
-++| .....+..+..+......+.+.|+|++|+|||+|++.+++.. ...-..+.|+++.....
T Consensus 24 f~~~-~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~---~~~~~~v~y~~~~~~~~------------- 86 (235)
T PRK08084 24 FYPG-DNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAEL---SQRGRAVGYVPLDKRAW------------- 86 (235)
T ss_pred cccC-ccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH---HhCCCeEEEEEHHHHhh-------------
Confidence 3446 434456666666555556789999999999999999999872 22223356666533100
Q ss_pred CCCCCCccHHHHHHHHHHHHhcCCcEEEEEecC---------------------CCC--eEEEeec--------------
Q 038454 188 LSLTEDEDKVSRARRLLGKLKAKKKFVLILDDI---------------------DNH--TFCWGLR-------------- 230 (359)
Q Consensus 188 ~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv---------------------~~g--~ilvTtr-------------- 230 (359)
. ...+.+.+. .--+|++||+ ..| ++|+||+
T Consensus 87 -------~----~~~~~~~~~--~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~ 153 (235)
T PRK08084 87 -------F----VPEVLEGME--QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLA 153 (235)
T ss_pred -------h----hHHHHHHhh--hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHH
Confidence 0 001112221 1236778888 234 6888887
Q ss_pred -cc-ceeeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHHHH
Q 038454 231 -SM-GCEEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTVVG 289 (359)
Q Consensus 231 -~~-~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~ 289 (359)
+. ....+++.+++.++-.+++.+.+...+. .-.+++..-|++.+.|..-.+..+-.
T Consensus 154 SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~---~l~~~v~~~L~~~~~~d~r~l~~~l~ 211 (235)
T PRK08084 154 SRLDWGQIYKLQPLSDEEKLQALQLRARLRGF---ELPEDVGRFLLKRLDREMRTLFMTLD 211 (235)
T ss_pred HHHhCCceeeecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHhhcCCHHHHHHHHH
Confidence 11 1146899999999999998876643322 22356778888888876665544433
No 27
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.69 E-value=6.6e-07 Score=90.92 Aligned_cols=157 Identities=15% Similarity=0.241 Sum_probs=97.5
Q ss_pred cccccccchHHHHHHHHHHhcCCCccE-EEEEcCCCCcHHHHHHHHHcCcccccCC-------------------CccEE
Q 038454 106 TTTLVGENTKKIVKKVWEDLMGDKVTK-IGVWGMGGFGKTAIMRHINNRPQEETNE-------------------FSDVI 165 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l~~~~~~v-i~I~G~gGiGKTtLa~~v~~~~~~~~~~-------------------F~~~~ 165 (359)
-..++|.+. .+..|.+++..+++.- +.++|+.|+||||+|+.+++.+.- ... |.-++
T Consensus 15 FddIIGQe~--Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnc-e~~~~~~pCg~C~sC~~i~~g~~~Dvi 91 (944)
T PRK14949 15 FEQMVGQSH--VLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNC-EQGVTATPCGVCSSCVEIAQGRFVDLI 91 (944)
T ss_pred HHHhcCcHH--HHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccC-ccCCCCCCCCCchHHHHHhcCCCceEE
Confidence 457899966 8888888888877654 589999999999999999988411 111 10111
Q ss_pred EEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHH-HhcCCcEEEEEecC-----------------CCC--eE
Q 038454 166 WVTVSQPLDLVKLQAEIAMALKLSLTEDEDKVSRARRLLGK-LKAKKKFVLILDDI-----------------DNH--TF 225 (359)
Q Consensus 166 wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~~k~~LlVlDdv-----------------~~g--~i 225 (359)
+++......+.. ++.|. ..+... ..+ ++-++|||++ .++ ++
T Consensus 92 EidAas~~kVDd-IReLi-----------------e~v~~~P~~g-k~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrF 152 (944)
T PRK14949 92 EVDAASRTKVDD-TRELL-----------------DNVQYRPSRG-RFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKF 152 (944)
T ss_pred EeccccccCHHH-HHHHH-----------------HHHHhhhhcC-CcEEEEEechHhcCHHHHHHHHHHHhccCCCeEE
Confidence 121111111111 11121 111111 123 6779999999 233 55
Q ss_pred EEeec---------ccceeeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHH
Q 038454 226 CWGLR---------SMGCEEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTV 287 (359)
Q Consensus 226 lvTtr---------~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 287 (359)
|++|. ...|..|.+.+|+.++....+.+.+-..+. ....+.+..|++.++|.|--+..+
T Consensus 153 ILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI---~~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 153 LLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQL---PFEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred EEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 55554 234678999999999999998886533221 223567788999999988644444
No 28
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.68 E-value=7.9e-07 Score=76.39 Aligned_cols=174 Identities=17% Similarity=0.155 Sum_probs=82.2
Q ss_pred cccccccchHHHHHHHHHHh---c--CCCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHH
Q 038454 106 TTTLVGENTKKIVKKVWEDL---M--GDKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQA 180 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l---~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 180 (359)
-..|+|.+. .+..+.-++ . ++...-+.+||++|+||||||.-+++. ....|. +++...-....++ .
T Consensus 23 L~efiGQ~~--l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e---~~~~~~---~~sg~~i~k~~dl-~ 93 (233)
T PF05496_consen 23 LDEFIGQEH--LKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANE---LGVNFK---ITSGPAIEKAGDL-A 93 (233)
T ss_dssp CCCS-S-HH--HHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHH---CT--EE---EEECCC--SCHHH-H
T ss_pred HHHccCcHH--HHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhc---cCCCeE---eccchhhhhHHHH-H
Confidence 468999976 444433322 2 345778999999999999999999998 333442 3332111111111 1
Q ss_pred HHHHHhcCCC----CC-CccHHHHHHHHHHHHhcCCcEEEEEecC---------CCC--eEEEeec--------cccee-
Q 038454 181 EIAMALKLSL----TE-DEDKVSRARRLLGKLKAKKKFVLILDDI---------DNH--TFCWGLR--------SMGCE- 235 (359)
Q Consensus 181 ~i~~~l~~~~----~~-~~~~~~~~~~l~~~l~~~k~~LlVlDdv---------~~g--~ilvTtr--------~~~~~- 235 (359)
.++..+.... ++ ..-.....+.+...+.+ ..+-+|+.-- -+. -|=.||| .....
T Consensus 94 ~il~~l~~~~ILFIDEIHRlnk~~qe~LlpamEd-~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi 172 (233)
T PF05496_consen 94 AILTNLKEGDILFIDEIHRLNKAQQEILLPAMED-GKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRDRFGI 172 (233)
T ss_dssp HHHHT--TT-EEEECTCCC--HHHHHHHHHHHHC-SEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCTTSSE
T ss_pred HHHHhcCCCcEEEEechhhccHHHHHHHHHHhcc-CeEEEEeccccccceeeccCCCceEeeeeccccccchhHHhhcce
Confidence 2222221100 00 00011112222222222 2222222211 111 2234666 11111
Q ss_pred eeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHHHHhhc
Q 038454 236 EVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTVVGCMR 292 (359)
Q Consensus 236 ~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~L~ 292 (359)
..+++..+.+|-.++..+.+..-+. +-..+.+.+|++.|.|-|--..-+-..++
T Consensus 173 ~~~l~~Y~~~el~~Iv~r~a~~l~i---~i~~~~~~~Ia~rsrGtPRiAnrll~rvr 226 (233)
T PF05496_consen 173 VLRLEFYSEEELAKIVKRSARILNI---EIDEDAAEEIARRSRGTPRIANRLLRRVR 226 (233)
T ss_dssp EEE----THHHHHHHHHHCCHCTT----EE-HHHHHHHHHCTTTSHHHHHHHHHHHC
T ss_pred ecchhcCCHHHHHHHHHHHHHHhCC---CcCHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 3579999999999999887643322 23467889999999999987766655554
No 29
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.67 E-value=1.1e-06 Score=87.89 Aligned_cols=157 Identities=15% Similarity=0.233 Sum_probs=97.5
Q ss_pred cccccccchHHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHcCcccccCC-------------------CccEE
Q 038454 106 TTTLVGENTKKIVKKVWEDLMGDKV-TKIGVWGMGGFGKTAIMRHINNRPQEETNE-------------------FSDVI 165 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~-------------------F~~~~ 165 (359)
-..++|.+. .++.|.+++..+++ ..+.++|..|+||||+|+.+.+.+. -... |..++
T Consensus 15 FdEVIGQe~--Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLn-Ce~~~~~~PCG~C~sCr~I~~G~h~Dvi 91 (830)
T PRK07003 15 FASLVGQEH--VVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALN-CETGVTSQPCGVCRACREIDEGRFVDYV 91 (830)
T ss_pred HHHHcCcHH--HHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhc-CccCCCCCCCcccHHHHHHhcCCCceEE
Confidence 467899866 88889999987764 4668999999999999999988731 1111 11122
Q ss_pred EEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhcCCcEEEEEecC------------------CCC-eEE
Q 038454 166 WVTVSQPLDLVKLQAEIAMALKLSLTEDEDKVSRARRLLGKLKAKKKFVLILDDI------------------DNH-TFC 226 (359)
Q Consensus 166 wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv------------------~~g-~il 226 (359)
+++.+....+.++ +.+++ ........++.-++|||++ ... ++|
T Consensus 92 EIDAas~rgVDdI-ReLIe-----------------~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FI 153 (830)
T PRK07003 92 EMDAASNRGVDEM-AALLE-----------------RAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFI 153 (830)
T ss_pred EecccccccHHHH-HHHHH-----------------HHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEE
Confidence 2222111111111 11111 1110111125568889999 235 777
Q ss_pred Eeec---------ccceeeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCch-hHHHH
Q 038454 227 WGLR---------SMGCEEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQ-LAIFT 286 (359)
Q Consensus 227 vTtr---------~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P-lai~~ 286 (359)
++|+ ...|..+.+.+++.++..+.+.+.+...+. .-..+....|++.++|.. -++..
T Consensus 154 LaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI---~id~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 154 LATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERI---AFEPQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred EEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 7776 345678999999999999999887644322 123567788999998865 45544
No 30
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.66 E-value=1.7e-06 Score=81.57 Aligned_cols=153 Identities=17% Similarity=0.270 Sum_probs=94.0
Q ss_pred cccccccchHHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHcCcccccCC-------------------CccEE
Q 038454 106 TTTLVGENTKKIVKKVWEDLMGDKV-TKIGVWGMGGFGKTAIMRHINNRPQEETNE-------------------FSDVI 165 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~-------------------F~~~~ 165 (359)
-..++|.+. .++.+...+..++. ..+.++|+.|+||||+|+.+++.+. -... +....
T Consensus 15 ~~~iiGq~~--~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~-c~~~~~~~pc~~c~~c~~~~~~~~~d~~ 91 (363)
T PRK14961 15 FRDIIGQKH--IVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLN-CQNGITSNPCRKCIICKEIEKGLCLDLI 91 (363)
T ss_pred hhhccChHH--HHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhc-CCCCCCCCCCCCCHHHHHHhcCCCCceE
Confidence 457899866 78888888877654 5679999999999999999998731 0000 11111
Q ss_pred EEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHh----cCCcEEEEEecC-----------------C-CC
Q 038454 166 WVTVSQPLDLVKLQAEIAMALKLSLTEDEDKVSRARRLLGKLK----AKKKFVLILDDI-----------------D-NH 223 (359)
Q Consensus 166 wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv-----------------~-~g 223 (359)
++..+..... +..+.+.+.+. .+++-++|+|++ . +.
T Consensus 92 ~~~~~~~~~v----------------------~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~ 149 (363)
T PRK14961 92 EIDAASRTKV----------------------EEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQH 149 (363)
T ss_pred EecccccCCH----------------------HHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCC
Confidence 2211111111 11222222221 125568899998 2 33
Q ss_pred -eEEEeec---------ccceeeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHH
Q 038454 224 -TFCWGLR---------SMGCEEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFT 286 (359)
Q Consensus 224 -~ilvTtr---------~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~ 286 (359)
.+|++|. ...+..+++.+++.++..+.+...+...+. .-..+.+..|++.++|.|-.+..
T Consensus 150 ~~fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~---~i~~~al~~ia~~s~G~~R~al~ 219 (363)
T PRK14961 150 IKFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESI---DTDEYALKLIAYHAHGSMRDALN 219 (363)
T ss_pred eEEEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHH
Confidence 5666555 223467999999999999988876543321 12346678899999998864433
No 31
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.66 E-value=3.8e-06 Score=75.47 Aligned_cols=182 Identities=18% Similarity=0.180 Sum_probs=119.4
Q ss_pred cccccccch-HHHHHHHHHHhcC---CCccEEEEEcCCCCcHHHHHHHHHcCcccccCC---CccEEEEEeCCCcCHHHH
Q 038454 106 TTTLVGENT-KKIVKKVWEDLMG---DKVTKIGVWGMGGFGKTAIMRHINNRPQEETNE---FSDVIWVTVSQPLDLVKL 178 (359)
Q Consensus 106 ~~~~vGr~~-~~~~~~l~~~l~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~---F~~~~wv~~~~~~~~~~~ 178 (359)
.+..+|-.. .+.++.|.+.+.. ...+.+.|+|.+|.|||++++++........+. --.++.|.....++...+
T Consensus 33 ~~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~ 112 (302)
T PF05621_consen 33 ADRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRF 112 (302)
T ss_pred cCCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHH
Confidence 456777655 4455566555544 356789999999999999999999763221111 013777888889999999
Q ss_pred HHHHHHHhcCCCCCCccHHHHHHHHHHHHhcCCcEEEEEecC---------------------CCC----eEEEeec---
Q 038454 179 QAEIAMALKLSLTEDEDKVSRARRLLGKLKAKKKFVLILDDI---------------------DNH----TFCWGLR--- 230 (359)
Q Consensus 179 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv---------------------~~g----~ilvTtr--- 230 (359)
...|+.+++.+.....+...........++.-+-=+||+|++ ++- -|.+.|+
T Consensus 113 Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~ 192 (302)
T PF05621_consen 113 YSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAY 192 (302)
T ss_pred HHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHH
Confidence 999999999987666666666666666666545668999999 121 3455665
Q ss_pred ---------ccceeeeecCCCChHH-HHHHHHHhh--cCCCCCCCCchHHHHHHHHHHcCCchhHHHHH
Q 038454 231 ---------SMGCEEVRVPPLSKEE-ALNLFLDKV--GRNILHVPTLNEEIINSVVEECAGLQLAIFTV 287 (359)
Q Consensus 231 ---------~~~~~~~~l~~L~~~e-a~~lf~~~~--~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 287 (359)
.....++.++....++ ...|+.... ..-.....-...+.+..|...++|+.=-+..+
T Consensus 193 ~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~l 261 (302)
T PF05621_consen 193 RALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSRL 261 (302)
T ss_pred HHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHHH
Confidence 1122456777766554 344433322 11122233445788999999999987555433
No 32
>PLN03025 replication factor C subunit; Provisional
Probab=98.64 E-value=1.3e-06 Score=81.01 Aligned_cols=158 Identities=16% Similarity=0.204 Sum_probs=97.4
Q ss_pred cccccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCc-cEEEEEeCCCcCHHHHHHHHHH
Q 038454 106 TTTLVGENTKKIVKKVWEDLMGDKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFS-DVIWVTVSQPLDLVKLQAEIAM 184 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~-~~~wv~~~~~~~~~~~~~~i~~ 184 (359)
-..++|.+. .+..|..++.+++.+-+.++|++|+||||+|..+++.+ ....|. .++-++.+...+.. ..+.++.
T Consensus 12 l~~~~g~~~--~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l--~~~~~~~~~~eln~sd~~~~~-~vr~~i~ 86 (319)
T PLN03025 12 LDDIVGNED--AVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHEL--LGPNYKEAVLELNASDDRGID-VVRNKIK 86 (319)
T ss_pred HHHhcCcHH--HHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH--hcccCccceeeecccccccHH-HHHHHHH
Confidence 457888865 77788888887777778899999999999999999873 122232 12222223222222 2222222
Q ss_pred HhcCCCCCCccHHHHHHHHHHHHhcCCcEEEEEecC------------------CCC-eEEEeec---------ccceee
Q 038454 185 ALKLSLTEDEDKVSRARRLLGKLKAKKKFVLILDDI------------------DNH-TFCWGLR---------SMGCEE 236 (359)
Q Consensus 185 ~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv------------------~~g-~ilvTtr---------~~~~~~ 236 (359)
.+..... .+..++.-+++||++ .+. ++++++. ...+..
T Consensus 87 ~~~~~~~--------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~ 152 (319)
T PLN03025 87 MFAQKKV--------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAI 152 (319)
T ss_pred HHHhccc--------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhc
Confidence 2111000 000125678999999 233 6666664 223457
Q ss_pred eecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHH
Q 038454 237 VRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIF 285 (359)
Q Consensus 237 ~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~ 285 (359)
+++.+++.++....+...+-..+... ..+....|++.++|-.-.+.
T Consensus 153 i~f~~l~~~~l~~~L~~i~~~egi~i---~~~~l~~i~~~~~gDlR~al 198 (319)
T PLN03025 153 VRFSRLSDQEILGRLMKVVEAEKVPY---VPEGLEAIIFTADGDMRQAL 198 (319)
T ss_pred ccCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHH
Confidence 89999999999999888764433212 24567889999998764443
No 33
>PTZ00202 tuzin; Provisional
Probab=98.63 E-value=6e-07 Score=84.09 Aligned_cols=143 Identities=14% Similarity=0.108 Sum_probs=92.0
Q ss_pred CCcccCCcccccccchHHHHHHHHHHhcC---CCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCH
Q 038454 99 SSGLILPTTTLVGENTKKIVKKVWEDLMG---DKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDL 175 (359)
Q Consensus 99 ~~~~~~~~~~~vGr~~~~~~~~l~~~l~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~ 175 (359)
..+.|.+...|+||+. ++..|...|.+ +.++++.|+|++|+|||||++.+.... . + ..++++.. +.
T Consensus 254 ~~~lPa~~~~FVGRea--Ela~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l-~----~-~qL~vNpr---g~ 322 (550)
T PTZ00202 254 LQSAPAVIRQFVSREA--EESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE-G----M-PAVFVDVR---GT 322 (550)
T ss_pred ccCCCCCccCCCCcHH--HHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC-C----c-eEEEECCC---CH
Confidence 3445666789999977 77777777743 245699999999999999999999872 1 2 13344433 67
Q ss_pred HHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHh----c-CCcEEEEEe-----cC------------CCC--eEEEeec-
Q 038454 176 VKLQAEIAMALKLSLTEDEDKVSRARRLLGKLK----A-KKKFVLILD-----DI------------DNH--TFCWGLR- 230 (359)
Q Consensus 176 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~-~k~~LlVlD-----dv------------~~g--~ilvTtr- 230 (359)
.+++..|+.+||.+.. ....++...+.+.+. . +++.+||+- ++ +.. .|++.--
T Consensus 323 eElLr~LL~ALGV~p~--~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v~la~drr~ch~v~evpl 400 (550)
T PTZ00202 323 EDTLRSVVKALGVPNV--EACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVVALACDRRLCHVVIEVPL 400 (550)
T ss_pred HHHHHHHHHHcCCCCc--ccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHHHHHccchhheeeeeehH
Confidence 9999999999997432 333445555554442 2 366666653 22 111 3332221
Q ss_pred ---------ccceeeeecCCCChHHHHHHHHHh
Q 038454 231 ---------SMGCEEVRVPPLSKEEALNLFLDK 254 (359)
Q Consensus 231 ---------~~~~~~~~l~~L~~~ea~~lf~~~ 254 (359)
...-.-|-+++++.++|...-.+.
T Consensus 401 eslt~~~~~lprldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 401 ESLTIANTLLPRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred hhcchhcccCccceeEecCCCCHHHHHHHHhhc
Confidence 111245788999999998775543
No 34
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.62 E-value=8.2e-08 Score=81.46 Aligned_cols=45 Identities=22% Similarity=0.384 Sum_probs=31.1
Q ss_pred cccccchHHHHHHHHHHh---cCCCccEEEEEcCCCCcHHHHHHHHHcCc
Q 038454 108 TLVGENTKKIVKKVWEDL---MGDKVTKIGVWGMGGFGKTAIMRHINNRP 154 (359)
Q Consensus 108 ~~vGr~~~~~~~~l~~~l---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 154 (359)
.|+||+. +++++...+ .....+.+.|+|.+|+|||+|+++++..+
T Consensus 1 ~fvgR~~--e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 1 QFVGREE--EIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp --TT-HH--HHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred CCCCHHH--HHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4899966 999999988 34467899999999999999999999883
No 35
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.62 E-value=1.8e-06 Score=85.36 Aligned_cols=167 Identities=16% Similarity=0.259 Sum_probs=97.1
Q ss_pred cccccccchHHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHH
Q 038454 106 TTTLVGENTKKIVKKVWEDLMGDKV-TKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAM 184 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 184 (359)
-..++|.+. .+..|..++..++. ..+.++|+.|+||||+|+.+++.+. -..... . ..++.-...+.+..
T Consensus 14 FddVIGQe~--vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~Ln-C~~~~~------~-~pCg~C~sC~~I~~ 83 (702)
T PRK14960 14 FNELVGQNH--VSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLN-CETGVT------S-TPCEVCATCKAVNE 83 (702)
T ss_pred HHHhcCcHH--HHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhC-CCcCCC------C-CCCccCHHHHHHhc
Confidence 467899866 88889998887764 5779999999999999999988731 000000 0 00000001111110
Q ss_pred HhcC-----CCCCCccHHHHHHHHHHHH----hcCCcEEEEEecC------------------CCC-eEEEeec------
Q 038454 185 ALKL-----SLTEDEDKVSRARRLLGKL----KAKKKFVLILDDI------------------DNH-TFCWGLR------ 230 (359)
Q Consensus 185 ~l~~-----~~~~~~~~~~~~~~l~~~l----~~~k~~LlVlDdv------------------~~g-~ilvTtr------ 230 (359)
.-.. ........++ ++.+.... ..++.-++|+|++ ..+ .+|++|.
T Consensus 84 g~hpDviEIDAAs~~~Vdd-IReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp 162 (702)
T PRK14960 84 GRFIDLIEIDAASRTKVED-TRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLP 162 (702)
T ss_pred CCCCceEEecccccCCHHH-HHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhh
Confidence 0000 0000011111 11222111 1126678999999 234 6777665
Q ss_pred ---ccceeeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHH
Q 038454 231 ---SMGCEEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFT 286 (359)
Q Consensus 231 ---~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~ 286 (359)
...|..+.+.+++.++..+.+.+.+-..+. .-..+....|++.++|.+-.+..
T Consensus 163 ~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI---~id~eAL~~IA~~S~GdLRdALn 218 (702)
T PRK14960 163 ITVISRCLQFTLRPLAVDEITKHLGAILEKEQI---AADQDAIWQIAESAQGSLRDALS 218 (702)
T ss_pred HHHHHhhheeeccCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHH
Confidence 234567999999999999998887644322 22346678899999997755443
No 36
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.61 E-value=1.7e-06 Score=80.84 Aligned_cols=176 Identities=15% Similarity=0.147 Sum_probs=104.7
Q ss_pred ccCCcccccccchHHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHcCccccc-CCCccEEEEEeCCCcCHHHHH
Q 038454 102 LILPTTTLVGENTKKIVKKVWEDLMGDKV-TKIGVWGMGGFGKTAIMRHINNRPQEET-NEFSDVIWVTVSQPLDLVKLQ 179 (359)
Q Consensus 102 ~~~~~~~~vGr~~~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~F~~~~wv~~~~~~~~~~~~ 179 (359)
.|.....++|.+. ....+...+..+.. ..+.++|+.|+||||+|..+++.+.-.. ..+... ........-...
T Consensus 18 ~P~~~~~l~Gh~~--a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c 92 (351)
T PRK09112 18 SPSENTRLFGHEE--AEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVW 92 (351)
T ss_pred CCCchhhccCcHH--HHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHH
Confidence 3444678999966 88888888887764 4699999999999999999988741100 001111 001111111122
Q ss_pred HHHHHHhc-------CCC-C------CCccHHHHHHHHHHHHhc----CCcEEEEEecC------------------CCC
Q 038454 180 AEIAMALK-------LSL-T------EDEDKVSRARRLLGKLKA----KKKFVLILDDI------------------DNH 223 (359)
Q Consensus 180 ~~i~~~l~-------~~~-~------~~~~~~~~~~~l~~~l~~----~k~~LlVlDdv------------------~~g 223 (359)
+.+...-. .+. . ..... +.++.+.+++.. +++-++|+|++ ...
T Consensus 93 ~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~v-d~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~ 171 (351)
T PRK09112 93 RQIAQGAHPNLLHITRPFDEKTGKFKTAITV-DEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPAR 171 (351)
T ss_pred HHHHcCCCCCEEEeecccccccccccccCCH-HHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCC
Confidence 33322211 000 0 01112 233455555442 36678999999 222
Q ss_pred --eEEEeec--------ccceeeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHHH
Q 038454 224 --TFCWGLR--------SMGCEEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTVV 288 (359)
Q Consensus 224 --~ilvTtr--------~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~ 288 (359)
-|++|++ ...|..+.+.+++.++..+++....... . ...+.+..+++.++|.|.....+.
T Consensus 172 ~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~----~-~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 172 ALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQ----G-SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred ceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhccc----C-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3455544 3356789999999999999998742111 1 224557889999999998765544
No 37
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.61 E-value=2.8e-06 Score=78.62 Aligned_cols=152 Identities=15% Similarity=0.218 Sum_probs=96.4
Q ss_pred ccccccchHHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHcCc---ccccCCCccEEEEEe-CCCcCHHHHHHH
Q 038454 107 TTLVGENTKKIVKKVWEDLMGDKV-TKIGVWGMGGFGKTAIMRHINNRP---QEETNEFSDVIWVTV-SQPLDLVKLQAE 181 (359)
Q Consensus 107 ~~~vGr~~~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~---~~~~~~F~~~~wv~~-~~~~~~~~~~~~ 181 (359)
..++|.+. .++.+..++..+.. ....++|+.|+||||+|+.+++.+ .....|+|...|... +......+ .++
T Consensus 4 ~~i~g~~~--~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~ 80 (313)
T PRK05564 4 HTIIGHEN--IKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRN 80 (313)
T ss_pred hhccCcHH--HHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHH
Confidence 45778754 78889888877654 577899999999999999999853 112345565555442 23333333 233
Q ss_pred HHHHhcCCCCCCccHHHHHHHHHHHHhcCCcEEEEEecC------------------CCC-eEEEeec---------ccc
Q 038454 182 IAMALKLSLTEDEDKVSRARRLLGKLKAKKKFVLILDDI------------------DNH-TFCWGLR---------SMG 233 (359)
Q Consensus 182 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv------------------~~g-~ilvTtr---------~~~ 233 (359)
+...+.... ..+ ++-++|+|++ .++ .+|++|. ...
T Consensus 81 ~~~~~~~~p----------------~~~-~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SR 143 (313)
T PRK05564 81 IIEEVNKKP----------------YEG-DKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSR 143 (313)
T ss_pred HHHHHhcCc----------------ccC-CceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhh
Confidence 334332211 112 4556666665 345 5665655 234
Q ss_pred eeeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHH
Q 038454 234 CEEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIF 285 (359)
Q Consensus 234 ~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~ 285 (359)
|..+.+.+++.++....+...... ...+.+..++..++|.|.-+.
T Consensus 144 c~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 144 CQIYKLNRLSKEEIEKFISYKYND-------IKEEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred ceeeeCCCcCHHHHHHHHHHHhcC-------CCHHHHHHHHHHcCCCHHHHH
Confidence 678999999999998887665311 113456788999999886554
No 38
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.60 E-value=2.4e-06 Score=79.17 Aligned_cols=157 Identities=13% Similarity=0.190 Sum_probs=95.8
Q ss_pred cccccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEe--CCCcCHHHHHHHHH
Q 038454 106 TTTLVGENTKKIVKKVWEDLMGDKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTV--SQPLDLVKLQAEIA 183 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~--~~~~~~~~~~~~i~ 183 (359)
-..++|++. .++.+..++..+..+.+.++|.+|+||||+|+.+++.+ ....+.. .++.+ +....... ....+
T Consensus 16 ~~~~~g~~~--~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l--~~~~~~~-~~i~~~~~~~~~~~~-~~~~i 89 (319)
T PRK00440 16 LDEIVGQEE--IVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALAREL--YGEDWRE-NFLELNASDERGIDV-IRNKI 89 (319)
T ss_pred HHHhcCcHH--HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH--cCCcccc-ceEEeccccccchHH-HHHHH
Confidence 356889966 88899999988777778999999999999999999873 1222221 12222 22222111 11111
Q ss_pred HHhcCCCCCCccHHHHHHHHHHHHhcCCcEEEEEecC------------------CCC-eEEEeec---------cccee
Q 038454 184 MALKLSLTEDEDKVSRARRLLGKLKAKKKFVLILDDI------------------DNH-TFCWGLR---------SMGCE 235 (359)
Q Consensus 184 ~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv------------------~~g-~ilvTtr---------~~~~~ 235 (359)
..+....+ .....+-++++|++ .+. .+|+++. ...+.
T Consensus 90 ~~~~~~~~---------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~ 154 (319)
T PRK00440 90 KEFARTAP---------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCA 154 (319)
T ss_pred HHHHhcCC---------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhh
Confidence 11111000 00013457777777 223 5666554 11234
Q ss_pred eeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHH
Q 038454 236 EVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFT 286 (359)
Q Consensus 236 ~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~ 286 (359)
.+++.+++.++....+...+...+.. -..+.+..+++.++|.+--+..
T Consensus 155 ~~~~~~l~~~ei~~~l~~~~~~~~~~---i~~~al~~l~~~~~gd~r~~~~ 202 (319)
T PRK00440 155 VFRFSPLKKEAVAERLRYIAENEGIE---ITDDALEAIYYVSEGDMRKAIN 202 (319)
T ss_pred eeeeCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHH
Confidence 68999999999999888876443321 2256778899999998866443
No 39
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.60 E-value=2.6e-06 Score=74.49 Aligned_cols=157 Identities=19% Similarity=0.246 Sum_probs=90.3
Q ss_pred ccccchHHHHHHHHHHhcCC--CccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHHHh
Q 038454 109 LVGENTKKIVKKVWEDLMGD--KVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAMAL 186 (359)
Q Consensus 109 ~vGr~~~~~~~~l~~~l~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l 186 (359)
++|...+...........+. ....+.|+|..|+|||.|.+++++.+.+..... .++|++ ..++...+...+
T Consensus 11 v~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~-~v~y~~------~~~f~~~~~~~~ 83 (219)
T PF00308_consen 11 VVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGK-RVVYLS------AEEFIREFADAL 83 (219)
T ss_dssp --TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS--EEEEE------HHHHHHHHHHHH
T ss_pred CcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccc-cceeec------HHHHHHHHHHHH
Confidence 35654433333333333332 345689999999999999999999842222222 355654 445555665555
Q ss_pred cCCCCCCccHHHHHHHHHHHHhcCCcEEEEEecC---------------------CCC-eEEEeec--------------
Q 038454 187 KLSLTEDEDKVSRARRLLGKLKAKKKFVLILDDI---------------------DNH-TFCWGLR-------------- 230 (359)
Q Consensus 187 ~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv---------------------~~g-~ilvTtr-------------- 230 (359)
... . ...+.+.+. .-=+|++||+ ..| ++|+|+.
T Consensus 84 ~~~-----~----~~~~~~~~~--~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~ 152 (219)
T PF00308_consen 84 RDG-----E----IEEFKDRLR--SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLR 152 (219)
T ss_dssp HTT-----S----HHHHHHHHC--TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHH
T ss_pred Hcc-----c----chhhhhhhh--cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhh
Confidence 431 1 223444444 3558889999 467 9999997
Q ss_pred -c-cceeeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHH
Q 038454 231 -S-MGCEEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFT 286 (359)
Q Consensus 231 -~-~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~ 286 (359)
+ ...-.+++.+++.++-.+++.+.+...+.. -.++++.-|++.+.+..-.+..
T Consensus 153 SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~---l~~~v~~~l~~~~~~~~r~L~~ 207 (219)
T PF00308_consen 153 SRLSWGLVVELQPPDDEDRRRILQKKAKERGIE---LPEEVIEYLARRFRRDVRELEG 207 (219)
T ss_dssp HHHHCSEEEEE----HHHHHHHHHHHHHHTT-----S-HHHHHHHHHHTTSSHHHHHH
T ss_pred hhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCC---CcHHHHHHHHHhhcCCHHHHHH
Confidence 1 122358999999999999999887544332 2246666677777655544443
No 40
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.60 E-value=1.1e-06 Score=86.55 Aligned_cols=173 Identities=17% Similarity=0.243 Sum_probs=96.8
Q ss_pred cccccccchHHHHHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHH
Q 038454 106 TTTLVGENTKKIVKKVWEDLMGDKVT-KIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAM 184 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 184 (359)
-..+||.+. .+..|.+++..+++. .+.++|..|+||||+|+.+++.+. ...-+..--+. +..+..-.....|..
T Consensus 15 FddVIGQe~--vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLn--C~~p~~~~g~~-~~PCG~C~sC~~I~a 89 (700)
T PRK12323 15 FTTLVGQEH--VVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLN--CTGADGEGGIT-AQPCGQCRACTEIDA 89 (700)
T ss_pred HHHHcCcHH--HHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhc--CCCccccccCC-CCCCcccHHHHHHHc
Confidence 467899966 888899999887654 578999999999999999988731 10000000000 000000011111110
Q ss_pred H-----hcCCCCCCccHHHHHHHHHHHH----hcCCcEEEEEecC------------------CCC-eEEEeec------
Q 038454 185 A-----LKLSLTEDEDKVSRARRLLGKL----KAKKKFVLILDDI------------------DNH-TFCWGLR------ 230 (359)
Q Consensus 185 ~-----l~~~~~~~~~~~~~~~~l~~~l----~~~k~~LlVlDdv------------------~~g-~ilvTtr------ 230 (359)
. +..+.......++ ++.+.+.+ ..++.-++|+|++ ..+ .+|++|.
T Consensus 90 G~hpDviEIdAas~~gVDd-IReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLl 168 (700)
T PRK12323 90 GRFVDYIEMDAASNRGVDE-MAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIP 168 (700)
T ss_pred CCCCcceEecccccCCHHH-HHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhh
Confidence 0 0000000111111 11222221 1136678999999 233 5554444
Q ss_pred ---ccceeeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHH
Q 038454 231 ---SMGCEEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTV 287 (359)
Q Consensus 231 ---~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 287 (359)
...|..+.+.+++.++..+.+.+.+...+. ....+..+.|++.++|.|.-...+
T Consensus 169 pTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi---~~d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 169 VTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGI---AHEVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred hHHHHHHHhcccCCCChHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 345678999999999999998877643322 122455688999999999655444
No 41
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.59 E-value=4.1e-06 Score=78.66 Aligned_cols=173 Identities=13% Similarity=0.095 Sum_probs=100.6
Q ss_pred cCCcccccccchHHHHHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHcCcccccCC-CccE---E-EEEeCCCcCHH
Q 038454 103 ILPTTTLVGENTKKIVKKVWEDLMGDKVT-KIGVWGMGGFGKTAIMRHINNRPQEETNE-FSDV---I-WVTVSQPLDLV 176 (359)
Q Consensus 103 ~~~~~~~vGr~~~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~-F~~~---~-wv~~~~~~~~~ 176 (359)
|.....++|.+. .+..|.+.+.+++.+ .+.++|+.|+||+|+|..+++.+ .... .... . -.+.. ....-
T Consensus 15 P~~~~~iiGq~~--~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~L--lc~~~~~~~~~~~~~~~l~-~~~~c 89 (365)
T PRK07471 15 PRETTALFGHAA--AEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFL--LATPPPGGDGAVPPPTSLA-IDPDH 89 (365)
T ss_pred CCchhhccChHH--HHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHH--hCCCCCCCCcccccccccc-CCCCC
Confidence 333567999865 888888888887654 69999999999999999988873 1111 0000 0 00000 00000
Q ss_pred HHHHHHHHHhcCC-------C-C------CCccHHHHHHHHHHHHhc----CCcEEEEEecC------------------
Q 038454 177 KLQAEIAMALKLS-------L-T------EDEDKVSRARRLLGKLKA----KKKFVLILDDI------------------ 220 (359)
Q Consensus 177 ~~~~~i~~~l~~~-------~-~------~~~~~~~~~~~l~~~l~~----~k~~LlVlDdv------------------ 220 (359)
...+.+...-..+ . . .... .+.++.+.+.+.- +++.++|+|++
T Consensus 90 ~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~-VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEep 168 (365)
T PRK07471 90 PVARRIAAGAHGGLLTLERSWNEKGKRLRTVIT-VDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEP 168 (365)
T ss_pred hHHHHHHccCCCCeEEEeccccccccccccccc-HHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcC
Confidence 1111111111000 0 0 0011 2234445544432 36779999999
Q ss_pred CCC-eEEEeec---------ccceeeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHHH
Q 038454 221 DNH-TFCWGLR---------SMGCEEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTVV 288 (359)
Q Consensus 221 ~~g-~ilvTtr---------~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~ 288 (359)
.++ .+|++|. ...|..+.+.+++.++..+++....... .......++..++|.|+....+.
T Consensus 169 p~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~-------~~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 169 PARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDL-------PDDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred CCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccC-------CHHHHHHHHHHcCCCHHHHHHHh
Confidence 234 5666665 3456789999999999999998763111 11223678999999998665543
No 42
>PRK04195 replication factor C large subunit; Provisional
Probab=98.59 E-value=1.9e-06 Score=84.42 Aligned_cols=159 Identities=14% Similarity=0.224 Sum_probs=99.7
Q ss_pred cccccccchHHHHHHHHHHhcC----CCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHH
Q 038454 106 TTTLVGENTKKIVKKVWEDLMG----DKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAE 181 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 181 (359)
-..++|.+. .+..+..|+.. ...+.+.|+|++|+||||+|+.+++.+ .|+ .+-++.+...+.. .+..
T Consensus 13 l~dlvg~~~--~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el-----~~~-~ielnasd~r~~~-~i~~ 83 (482)
T PRK04195 13 LSDVVGNEK--AKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY-----GWE-VIELNASDQRTAD-VIER 83 (482)
T ss_pred HHHhcCCHH--HHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc-----CCC-EEEEcccccccHH-HHHH
Confidence 457899866 77777777753 226889999999999999999999983 233 3334444432222 2222
Q ss_pred HHHHhcCCCCCCccHHHHHHHHHHHHhcCCcEEEEEecC--------------------CCC-eEEEeec----------
Q 038454 182 IAMALKLSLTEDEDKVSRARRLLGKLKAKKKFVLILDDI--------------------DNH-TFCWGLR---------- 230 (359)
Q Consensus 182 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv--------------------~~g-~ilvTtr---------- 230 (359)
++........ .... ++-+||||++ ..+ .+|+++.
T Consensus 84 ~i~~~~~~~s--------------l~~~-~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~~~~iIli~n~~~~~~~k~L 148 (482)
T PRK04195 84 VAGEAATSGS--------------LFGA-RRKLILLDEVDGIHGNEDRGGARAILELIKKAKQPIILTANDPYDPSLREL 148 (482)
T ss_pred HHHHhhccCc--------------ccCC-CCeEEEEecCcccccccchhHHHHHHHHHHcCCCCEEEeccCccccchhhH
Confidence 2222211100 0012 6778999988 123 5666664
Q ss_pred ccceeeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHHHHhh
Q 038454 231 SMGCEEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTVVGCM 291 (359)
Q Consensus 231 ~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~L 291 (359)
...+..+.+.+++..+....+...+...+... ..+....|++.++|-.-.+......+
T Consensus 149 rsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i---~~eaL~~Ia~~s~GDlR~ain~Lq~~ 206 (482)
T PRK04195 149 RNACLMIEFKRLSTRSIVPVLKRICRKEGIEC---DDEALKEIAERSGGDLRSAINDLQAI 206 (482)
T ss_pred hccceEEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 12345689999999999998888764433322 24677889999988776655443333
No 43
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.59 E-value=1.4e-07 Score=87.65 Aligned_cols=89 Identities=17% Similarity=0.153 Sum_probs=60.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCc--CHHHHHHHHHHHhcCCCCCCccHHH------HHH
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPL--DLVKLQAEIAMALKLSLTEDEDKVS------RAR 201 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~------~~~ 201 (359)
-...+|+|++|+||||||+.+|+.+ ..++|++++||.+.+.. .+.++++.+...+-....+...... ...
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I--~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie 246 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSI--TTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIE 246 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHH--HhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHH
Confidence 3568999999999999999999984 23489999999998877 7788888886432222221111111 111
Q ss_pred HHHHHHhcCCcEEEEEecC
Q 038454 202 RLLGKLKAKKKFVLILDDI 220 (359)
Q Consensus 202 ~l~~~l~~~k~~LlVlDdv 220 (359)
........++++||++|++
T Consensus 247 ~Ae~~~e~G~dVlL~iDsI 265 (416)
T PRK09376 247 KAKRLVEHGKDVVILLDSI 265 (416)
T ss_pred HHHHHHHcCCCEEEEEECh
Confidence 1222222359999999999
No 44
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.59 E-value=3e-07 Score=89.80 Aligned_cols=170 Identities=17% Similarity=0.123 Sum_probs=97.1
Q ss_pred cccccccchHHHHHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHH
Q 038454 106 TTTLVGENTKKIVKKVWEDLMGDKVT-KIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAM 184 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 184 (359)
-..++|.+. .+..|..++..+... .+.++|++|+||||+|+.+++.+ ...+.+...+|.|.+.. .+......-+.
T Consensus 13 ~~dvvGq~~--v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l-~c~~~~~~~cg~C~sc~-~i~~~~h~dv~ 88 (504)
T PRK14963 13 FDEVVGQEH--VKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAV-NCSGEDPKPCGECESCL-AVRRGAHPDVL 88 (504)
T ss_pred HHHhcChHH--HHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHH-hccCCCCCCCCcChhhH-HHhcCCCCceE
Confidence 357899865 788888888777654 56999999999999999998873 11122222233221110 00000000000
Q ss_pred HhcCCCCCCccHHHHHHHHHHHHhc----CCcEEEEEecC------------------CCC-eEEEeec---------cc
Q 038454 185 ALKLSLTEDEDKVSRARRLLGKLKA----KKKFVLILDDI------------------DNH-TFCWGLR---------SM 232 (359)
Q Consensus 185 ~l~~~~~~~~~~~~~~~~l~~~l~~----~k~~LlVlDdv------------------~~g-~ilvTtr---------~~ 232 (359)
.++.. .... .+.++.+.+.+.. .++-++|+|++ .+. .+|++|. ..
T Consensus 89 el~~~--~~~~-vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~S 165 (504)
T PRK14963 89 EIDAA--SNNS-VEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILS 165 (504)
T ss_pred Eeccc--ccCC-HHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhc
Confidence 00000 0111 1112222222211 25668889998 233 4444443 23
Q ss_pred ceeeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHH
Q 038454 233 GCEEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIF 285 (359)
Q Consensus 233 ~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~ 285 (359)
.+..+.+.+++.++..+.+.+.+-..+.. -..+.+..|++.++|.+--+.
T Consensus 166 Rc~~~~f~~ls~~el~~~L~~i~~~egi~---i~~~Al~~ia~~s~GdlR~al 215 (504)
T PRK14963 166 RTQHFRFRRLTEEEIAGKLRRLLEAEGRE---AEPEALQLVARLADGAMRDAE 215 (504)
T ss_pred ceEEEEecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHH
Confidence 35679999999999999998876443321 135677889999999886553
No 45
>PRK09087 hypothetical protein; Validated
Probab=98.57 E-value=2.6e-06 Score=74.78 Aligned_cols=118 Identities=14% Similarity=0.155 Sum_probs=75.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhc
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAMALKLSLTEDEDKVSRARRLLGKLKA 209 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 209 (359)
.+.+.|+|.+|+|||+|++.+++. . . ..|++.. .+...+...+ .
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~-~--~-----~~~i~~~------~~~~~~~~~~---------------------~- 87 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREK-S--D-----ALLIHPN------EIGSDAANAA---------------------A- 87 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHh-c--C-----CEEecHH------HcchHHHHhh---------------------h-
Confidence 467999999999999999998876 1 1 1243321 1111111111 0
Q ss_pred CCcEEEEEecC------------------CCC-eEEEeec----------------ccceeeeecCCCChHHHHHHHHHh
Q 038454 210 KKKFVLILDDI------------------DNH-TFCWGLR----------------SMGCEEVRVPPLSKEEALNLFLDK 254 (359)
Q Consensus 210 ~k~~LlVlDdv------------------~~g-~ilvTtr----------------~~~~~~~~l~~L~~~ea~~lf~~~ 254 (359)
.-+|++||+ ..| .+++|++ -..+..+++.+++.++-.+++.+.
T Consensus 88 --~~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~ 165 (226)
T PRK09087 88 --EGPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKL 165 (226)
T ss_pred --cCeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHH
Confidence 125555666 346 7777776 112246899999999999999988
Q ss_pred hcCCCCCCCCchHHHHHHHHHHcCCchhHHHHHH
Q 038454 255 VGRNILHVPTLNEEIINSVVEECAGLQLAIFTVV 288 (359)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~ 288 (359)
+-..+. .-.+++..-|++.+.|..-++..+-
T Consensus 166 ~~~~~~---~l~~ev~~~La~~~~r~~~~l~~~l 196 (226)
T PRK09087 166 FADRQL---YVDPHVVYYLVSRMERSLFAAQTIV 196 (226)
T ss_pred HHHcCC---CCCHHHHHHHHHHhhhhHHHHHHHH
Confidence 744322 1235777889998888877776433
No 46
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.56 E-value=1.3e-06 Score=83.76 Aligned_cols=171 Identities=12% Similarity=0.102 Sum_probs=97.3
Q ss_pred cccccccchHHHHHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHH
Q 038454 106 TTTLVGENTKKIVKKVWEDLMGDKVT-KIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAM 184 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 184 (359)
-..++|.+. .+..|..++..+.+. .+.++|+.|+||||+|+.+++.+ ........ ..+....+...+......
T Consensus 17 f~dvVGQe~--iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~L--nce~~~~~--~pCg~C~sC~~i~~g~~~ 90 (484)
T PRK14956 17 FRDVIHQDL--AIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRL--NCENPIGN--EPCNECTSCLEITKGISS 90 (484)
T ss_pred HHHHhChHH--HHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhc--CcccccCc--cccCCCcHHHHHHccCCc
Confidence 457899866 788888888888754 68999999999999999999873 11111000 000111111111111000
Q ss_pred Hh---cCCCC-CCccHHHHHHHHHHHHhcCCcEEEEEecC-----------------CCC--eEEEee-c--------cc
Q 038454 185 AL---KLSLT-EDEDKVSRARRLLGKLKAKKKFVLILDDI-----------------DNH--TFCWGL-R--------SM 232 (359)
Q Consensus 185 ~l---~~~~~-~~~~~~~~~~~l~~~l~~~k~~LlVlDdv-----------------~~g--~ilvTt-r--------~~ 232 (359)
.+ ..... ...+..+....+...-..++.-++|+|++ .++ .+|++| . ..
T Consensus 91 dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~S 170 (484)
T PRK14956 91 DVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILS 170 (484)
T ss_pred cceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHh
Confidence 00 00000 01111122222221111236679999999 334 444444 3 34
Q ss_pred ceeeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHH
Q 038454 233 GCEEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIF 285 (359)
Q Consensus 233 ~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~ 285 (359)
.|..|.+.+++.++..+.+.+.+...+. .-..+....|++.++|.+--+.
T Consensus 171 RCq~~~f~~ls~~~i~~~L~~i~~~Egi---~~e~eAL~~Ia~~S~Gd~RdAL 220 (484)
T PRK14956 171 RCQDFIFKKVPLSVLQDYSEKLCKIENV---QYDQEGLFWIAKKGDGSVRDML 220 (484)
T ss_pred hhheeeecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCChHHHHH
Confidence 5677999999999999888887643322 2235677889999999885443
No 47
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.56 E-value=2.9e-06 Score=80.33 Aligned_cols=150 Identities=15% Similarity=0.161 Sum_probs=89.9
Q ss_pred ccccccchHHHHHHHHHHhcCCC----------ccEEEEEcCCCCcHHHHHHHHHcCccccc-----------------C
Q 038454 107 TTLVGENTKKIVKKVWEDLMGDK----------VTKIGVWGMGGFGKTAIMRHINNRPQEET-----------------N 159 (359)
Q Consensus 107 ~~~vGr~~~~~~~~l~~~l~~~~----------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-----------------~ 159 (359)
..++|.+. .++.|...+..+. ...+.++|++|+|||++|..+++.+.-.. +
T Consensus 5 ~~IiGq~~--~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~ 82 (394)
T PRK07940 5 DDLVGQEA--VVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAG 82 (394)
T ss_pred hhccChHH--HHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcC
Confidence 45788755 7778888887653 46789999999999999999987521000 0
Q ss_pred CCccEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhc----CCcEEEEEecC---------------
Q 038454 160 EFSDVIWVTVSQPLDLVKLQAEIAMALKLSLTEDEDKVSRARRLLGKLKA----KKKFVLILDDI--------------- 220 (359)
Q Consensus 160 ~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~----~k~~LlVlDdv--------------- 220 (359)
.++-+.++..... ....+ .++.+.+.... +++-++++|++
T Consensus 83 ~hpD~~~i~~~~~--------------------~i~i~-~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~L 141 (394)
T PRK07940 83 THPDVRVVAPEGL--------------------SIGVD-EVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAV 141 (394)
T ss_pred CCCCEEEeccccc--------------------cCCHH-HHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHh
Confidence 0111112211100 01111 12222222211 25558888999
Q ss_pred ---CCC-eEEEeec---------ccceeeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHH
Q 038454 221 ---DNH-TFCWGLR---------SMGCEEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTV 287 (359)
Q Consensus 221 ---~~g-~ilvTtr---------~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 287 (359)
.++ .+|++|. ...|..+.+.+++.++..+.+..... . ..+.+..++..++|.|.....+
T Consensus 142 Eep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~-----~---~~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 142 EEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG-----V---DPETARRAARASQGHIGRARRL 213 (394)
T ss_pred hcCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC-----C---CHHHHHHHHHHcCCCHHHHHHH
Confidence 234 4555444 33467899999999999988875321 1 1355778999999999755433
No 48
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.56 E-value=1.5e-06 Score=88.13 Aligned_cols=152 Identities=21% Similarity=0.300 Sum_probs=90.3
Q ss_pred cccccccchHHHH---HHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHH
Q 038454 106 TTTLVGENTKKIV---KKVWEDLMGDKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEI 182 (359)
Q Consensus 106 ~~~~vGr~~~~~~---~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 182 (359)
-+.++|.+. .+ ..+...+..+....+.++|++|+||||||+.+++. ....|. .++... ....
T Consensus 27 ldd~vGQe~--ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~---~~~~f~---~lna~~-~~i~------ 91 (725)
T PRK13341 27 LEEFVGQDH--ILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANH---TRAHFS---SLNAVL-AGVK------ 91 (725)
T ss_pred HHHhcCcHH--HhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHH---hcCcce---eehhhh-hhhH------
Confidence 356899865 44 35666677777888899999999999999999987 333441 111110 0010
Q ss_pred HHHhcCCCCCCccHHHHHHHHHHHHhc-CCcEEEEEecC---------------CCC-eEEEe--ecc----------cc
Q 038454 183 AMALKLSLTEDEDKVSRARRLLGKLKA-KKKFVLILDDI---------------DNH-TFCWG--LRS----------MG 233 (359)
Q Consensus 183 ~~~l~~~~~~~~~~~~~~~~l~~~l~~-~k~~LlVlDdv---------------~~g-~ilvT--tr~----------~~ 233 (359)
+.........+.+.. +++.+|+||++ ..| .++++ |.. ..
T Consensus 92 ------------dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~g~IiLI~aTTenp~~~l~~aL~SR 159 (725)
T PRK13341 92 ------------DLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVENGTITLIGATTENPYFEVNKALVSR 159 (725)
T ss_pred ------------HHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhcCceEEEEEecCCChHhhhhhHhhcc
Confidence 111112222222211 26789999999 345 34442 221 12
Q ss_pred eeeeecCCCChHHHHHHHHHhhcCC----CCCCCCchHHHHHHHHHHcCCchhHH
Q 038454 234 CEEVRVPPLSKEEALNLFLDKVGRN----ILHVPTLNEEIINSVVEECAGLQLAI 284 (359)
Q Consensus 234 ~~~~~l~~L~~~ea~~lf~~~~~~~----~~~~~~~~~~~~~~i~~~c~g~Plai 284 (359)
+..+.+++|+.++...++.+.+-.. +.....-..+....|++.+.|..-.+
T Consensus 160 ~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~l 214 (725)
T PRK13341 160 SRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSL 214 (725)
T ss_pred ccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHH
Confidence 4568999999999999988765310 01011223556678888888865433
No 49
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.53 E-value=4.6e-06 Score=80.67 Aligned_cols=182 Identities=14% Similarity=0.212 Sum_probs=111.7
Q ss_pred ccccchHHHHHHHHHHhcCC--CccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHHHh
Q 038454 109 LVGENTKKIVKKVWEDLMGD--KVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAMAL 186 (359)
Q Consensus 109 ~vGr~~~~~~~~l~~~l~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l 186 (359)
++|............+..+. ....+.|+|..|+|||+|++++++.+...... ..+++++ ..++...+...+
T Consensus 118 v~g~~n~~A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~-~~v~yv~------~~~f~~~~~~~l 190 (450)
T PRK14087 118 VIGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNFSD-LKVSYMS------GDEFARKAVDIL 190 (450)
T ss_pred cCCCcHHHHHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHHHHHhCCC-CeEEEEE------HHHHHHHHHHHH
Confidence 44654332344444443332 23568999999999999999999863111112 2344543 345666666665
Q ss_pred cCCCCCCccHHHHHHHHHHHHhcCCcEEEEEecC---------------------CCC-eEEEeec--------------
Q 038454 187 KLSLTEDEDKVSRARRLLGKLKAKKKFVLILDDI---------------------DNH-TFCWGLR-------------- 230 (359)
Q Consensus 187 ~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv---------------------~~g-~ilvTtr-------------- 230 (359)
+... .....+.+.+. ..-+||+||+ ..| .||+|+.
T Consensus 191 ~~~~-------~~~~~~~~~~~--~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~ 261 (450)
T PRK14087 191 QKTH-------KEIEQFKNEIC--QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLI 261 (450)
T ss_pred HHhh-------hHHHHHHHHhc--cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHH
Confidence 4310 12333444444 3458899999 456 7888876
Q ss_pred -ccc-eeeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHHHHhh------c---CCCChhH
Q 038454 231 -SMG-CEEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTVVGCM------R---GVDEIHE 299 (359)
Q Consensus 231 -~~~-~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~L------~---~~~~~~~ 299 (359)
+.. .-.+.+.+++.++-.+++.+.+-..+. ...-.+++..-|+..++|.|-.+.-+...+ . ..-+.+.
T Consensus 262 SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl-~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l~~~a~~~~~~~~it~~~ 340 (450)
T PRK14087 262 TRFNMGLSIAIQKLDNKTATAIIKKEIKNQNI-KQEVTEEAINFISNYYSDDVRKIKGSVSRLNFWSQQNPEEKIITIEI 340 (450)
T ss_pred HHHhCCceeccCCcCHHHHHHHHHHHHHhcCC-CCCCCHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcccCCCCCCHHH
Confidence 111 134689999999999999988743321 112346788999999999998876655333 2 1244555
Q ss_pred HHHHHHHH
Q 038454 300 WRNALNEL 307 (359)
Q Consensus 300 w~~~l~~~ 307 (359)
-+.++..+
T Consensus 341 v~~~l~~~ 348 (450)
T PRK14087 341 VSDLFRDI 348 (450)
T ss_pred HHHHHhhc
Confidence 56666554
No 50
>PF13173 AAA_14: AAA domain
Probab=98.52 E-value=6.9e-07 Score=71.27 Aligned_cols=95 Identities=20% Similarity=0.257 Sum_probs=61.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhc
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAMALKLSLTEDEDKVSRARRLLGKLKA 209 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 209 (359)
-+++.|.|+.|+|||||++++++++ . ....++|++..+....... ..+ ....+.+....
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~---~-~~~~~~yi~~~~~~~~~~~----------------~~~-~~~~~~~~~~~ 60 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDL---L-PPENILYINFDDPRDRRLA----------------DPD-LLEYFLELIKP 60 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh---c-ccccceeeccCCHHHHHHh----------------hhh-hHHHHHHhhcc
Confidence 3689999999999999999999883 1 3345777776553221100 000 12223333333
Q ss_pred CCcEEEEEecC----------------CCC-eEEEeec------c------c-ceeeeecCCCChHH
Q 038454 210 KKKFVLILDDI----------------DNH-TFCWGLR------S------M-GCEEVRVPPLSKEE 246 (359)
Q Consensus 210 ~k~~LlVlDdv----------------~~g-~ilvTtr------~------~-~~~~~~l~~L~~~e 246 (359)
++.+++||++ .+. +|++|+. . . ....+++.||+..|
T Consensus 61 -~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E 126 (128)
T PF13173_consen 61 -GKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFRE 126 (128)
T ss_pred -CCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHH
Confidence 6788999999 334 9999987 0 1 12358999999776
No 51
>PF14516 AAA_35: AAA-like domain
Probab=98.51 E-value=1.6e-05 Score=74.03 Aligned_cols=178 Identities=15% Similarity=0.213 Sum_probs=112.7
Q ss_pred CCcccccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCC-----cCHHHH
Q 038454 104 LPTTTLVGENTKKIVKKVWEDLMGDKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQP-----LDLVKL 178 (359)
Q Consensus 104 ~~~~~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~-----~~~~~~ 178 (359)
..++..|+|.. .-+++.+.+.+. -..+.|.|+-.+|||+|..++.+.. . +..+. ++++++..- .+...+
T Consensus 8 ~~~~~Yi~R~~--~e~~~~~~i~~~-G~~~~I~apRq~GKTSll~~l~~~l-~-~~~~~-~v~id~~~~~~~~~~~~~~f 81 (331)
T PF14516_consen 8 LDSPFYIERPP--AEQECYQEIVQP-GSYIRIKAPRQMGKTSLLLRLLERL-Q-QQGYR-CVYIDLQQLGSAIFSDLEQF 81 (331)
T ss_pred CCCCcccCchH--HHHHHHHHHhcC-CCEEEEECcccCCHHHHHHHHHHHH-H-HCCCE-EEEEEeecCCCcccCCHHHH
Confidence 33556778874 455666666653 2689999999999999999998883 2 23443 557776541 356666
Q ss_pred HHHHHHHh----cCCCC-------CCccHHHHHHHHHHHH-hc-CCcEEEEEecC-------------------------
Q 038454 179 QAEIAMAL----KLSLT-------EDEDKVSRARRLLGKL-KA-KKKFVLILDDI------------------------- 220 (359)
Q Consensus 179 ~~~i~~~l----~~~~~-------~~~~~~~~~~~l~~~l-~~-~k~~LlVlDdv------------------------- 220 (359)
++.++..+ +.... ...+.......+.+.+ .. +++.+|+||++
T Consensus 82 ~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~ 161 (331)
T PF14516_consen 82 LRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRK 161 (331)
T ss_pred HHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcc
Confidence 66555544 33211 0112222233333433 22 58999999999
Q ss_pred ----CCC-eEEEe-ec-----------ccce-eeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchh
Q 038454 221 ----DNH-TFCWG-LR-----------SMGC-EEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQL 282 (359)
Q Consensus 221 ----~~g-~ilvT-tr-----------~~~~-~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pl 282 (359)
... ++++. +. ..+. .++.|++++.+|...|+...-.. . .....+.|...+||+|.
T Consensus 162 ~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~----~---~~~~~~~l~~~tgGhP~ 234 (331)
T PF14516_consen 162 NNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE----F---SQEQLEQLMDWTGGHPY 234 (331)
T ss_pred cCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc----C---CHHHHHHHHHHHCCCHH
Confidence 111 22222 11 1111 36899999999999998876321 1 12348999999999999
Q ss_pred HHHHHHHhhcCC
Q 038454 283 AIFTVVGCMRGV 294 (359)
Q Consensus 283 ai~~~~~~L~~~ 294 (359)
-+..++..+..+
T Consensus 235 Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 235 LVQKACYLLVEE 246 (331)
T ss_pred HHHHHHHHHHHc
Confidence 999999999663
No 52
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.51 E-value=6.9e-06 Score=80.66 Aligned_cols=158 Identities=15% Similarity=0.180 Sum_probs=94.9
Q ss_pred cccccccchHHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHcCccccc------------------CCCccEEE
Q 038454 106 TTTLVGENTKKIVKKVWEDLMGDKV-TKIGVWGMGGFGKTAIMRHINNRPQEET------------------NEFSDVIW 166 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------~~F~~~~w 166 (359)
-..++|.+. .+..|...+..++. ..+.++|+.|+||||+|+.+++.+.-.. +.|...++
T Consensus 15 f~diiGq~~--~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlie 92 (546)
T PRK14957 15 FAEVAGQQH--ALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIE 92 (546)
T ss_pred HHHhcCcHH--HHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEE
Confidence 357889866 88888888887655 4588999999999999999988631000 01222223
Q ss_pred EEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHH-HhcCCcEEEEEecC-----------------CC-C-eEE
Q 038454 167 VTVSQPLDLVKLQAEIAMALKLSLTEDEDKVSRARRLLGK-LKAKKKFVLILDDI-----------------DN-H-TFC 226 (359)
Q Consensus 167 v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~~k~~LlVlDdv-----------------~~-g-~il 226 (359)
+.......+.+ .......+... ..+ ++-++|+|++ .+ . .+|
T Consensus 93 idaas~~gvd~------------------ir~ii~~~~~~p~~g-~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fI 153 (546)
T PRK14957 93 IDAASRTGVEE------------------TKEILDNIQYMPSQG-RYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFI 153 (546)
T ss_pred eecccccCHHH------------------HHHHHHHHHhhhhcC-CcEEEEEechhhccHHHHHHHHHHHhcCCCCceEE
Confidence 32222112211 11122222111 123 6679999998 22 3 444
Q ss_pred -Eeec--------ccceeeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchh-HHHHH
Q 038454 227 -WGLR--------SMGCEEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQL-AIFTV 287 (359)
Q Consensus 227 -vTtr--------~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pl-ai~~~ 287 (359)
+||. ...|..+++.+++.++....+.+.+-..+. .........|++.++|.+- |+..+
T Consensus 154 L~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi---~~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 154 LATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENI---NSDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred EEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4554 234678999999999988888875533221 2234566788999999664 44333
No 53
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.50 E-value=6.5e-06 Score=79.70 Aligned_cols=158 Identities=18% Similarity=0.272 Sum_probs=98.3
Q ss_pred cccccccchHHHHHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHcCcccc------------------cCCCccEEE
Q 038454 106 TTTLVGENTKKIVKKVWEDLMGDKVT-KIGVWGMGGFGKTAIMRHINNRPQEE------------------TNEFSDVIW 166 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~------------------~~~F~~~~w 166 (359)
-..++|.+. .+..|...+..+.+. .+.++|+.|+||||+|+.+++.+.-. .+.+..++.
T Consensus 12 f~dliGQe~--vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~e 89 (491)
T PRK14964 12 FKDLVGQDV--LVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIE 89 (491)
T ss_pred HHHhcCcHH--HHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEE
Confidence 467899865 777888888777665 79999999999999999998742000 011112334
Q ss_pred EEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhcCCcEEEEEecC------------------CCC-eEEE
Q 038454 167 VTVSQPLDLVKLQAEIAMALKLSLTEDEDKVSRARRLLGKLKAKKKFVLILDDI------------------DNH-TFCW 227 (359)
Q Consensus 167 v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv------------------~~g-~ilv 227 (359)
++.+...++.++ +.++...... -..+ +.-++|+|++ .+. .+|+
T Consensus 90 idaas~~~vddI-R~Iie~~~~~----------------P~~~-~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIl 151 (491)
T PRK14964 90 IDAASNTSVDDI-KVILENSCYL----------------PISS-KFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFIL 151 (491)
T ss_pred EecccCCCHHHH-HHHHHHHHhc----------------cccC-CceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEE
Confidence 444333333322 2222221110 0112 5668899998 234 5555
Q ss_pred eec---------ccceeeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHH
Q 038454 228 GLR---------SMGCEEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFT 286 (359)
Q Consensus 228 Ttr---------~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~ 286 (359)
+|. ...|..+.+.+++.++..+.+.+.+...+. .-..+....|++.++|.+-.+..
T Consensus 152 atte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi---~i~~eAL~lIa~~s~GslR~als 216 (491)
T PRK14964 152 ATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENI---EHDEESLKLIAENSSGSMRNALF 216 (491)
T ss_pred EeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHH
Confidence 554 334567899999999999998887654332 12346677899999998764433
No 54
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.50 E-value=4.1e-06 Score=83.35 Aligned_cols=172 Identities=13% Similarity=0.228 Sum_probs=96.0
Q ss_pred cccccccchHHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHcCccccc-CCCccEEEEEeCCCcCHHHHHHHHH
Q 038454 106 TTTLVGENTKKIVKKVWEDLMGDKV-TKIGVWGMGGFGKTAIMRHINNRPQEET-NEFSDVIWVTVSQPLDLVKLQAEIA 183 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~F~~~~wv~~~~~~~~~~~~~~i~ 183 (359)
-..++|.+. .+..|.+++..++. ..+.++|..|+||||+|+.+++.+.-.. ....+... ..++.-...+.|.
T Consensus 15 f~dviGQe~--vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~i~ 88 (618)
T PRK14951 15 FSEMVGQEH--VVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRDID 88 (618)
T ss_pred HHHhcCcHH--HHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHHHH
Confidence 457899755 88889888888765 5679999999999999999977631000 00000000 0001111111111
Q ss_pred HHhc-----CCCCCCccHHHHHHHHHHHHh----cCCcEEEEEecC-----------------C-CC-eEEEeec-----
Q 038454 184 MALK-----LSLTEDEDKVSRARRLLGKLK----AKKKFVLILDDI-----------------D-NH-TFCWGLR----- 230 (359)
Q Consensus 184 ~~l~-----~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv-----------------~-~g-~ilvTtr----- 230 (359)
..-. .+.......++ ++.+.+... .++.-++|||++ . .. .+|++|.
T Consensus 89 ~g~h~D~~eldaas~~~Vd~-iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~ki 167 (618)
T PRK14951 89 SGRFVDYTELDAASNRGVDE-VQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKV 167 (618)
T ss_pred cCCCCceeecCcccccCHHH-HHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhh
Confidence 0000 00000011111 222222211 125568899999 2 33 5555543
Q ss_pred ----ccceeeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHH
Q 038454 231 ----SMGCEEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTV 287 (359)
Q Consensus 231 ----~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 287 (359)
...|..+.+.+++.++..+.+.+.+...+. .-..+....|++.++|.+--+..+
T Consensus 168 l~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi---~ie~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 168 PVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENV---PAEPQALRLLARAARGSMRDALSL 225 (618)
T ss_pred hHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 334678999999999999998887644332 122466788899999977555443
No 55
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.50 E-value=5.5e-06 Score=82.66 Aligned_cols=168 Identities=14% Similarity=0.203 Sum_probs=96.4
Q ss_pred cccccccchHHHHHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHH
Q 038454 106 TTTLVGENTKKIVKKVWEDLMGDKVT-KIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAM 184 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 184 (359)
-..+||.+. .+..|...+..+++. .+.++|..|+||||+|+.+++.+.- ...+. ...+..-..++.|..
T Consensus 15 f~divGQe~--vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c-~~~~~-------~~pCg~C~~C~~i~~ 84 (647)
T PRK07994 15 FAEVVGQEH--VLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNC-ETGIT-------ATPCGECDNCREIEQ 84 (647)
T ss_pred HHHhcCcHH--HHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhh-ccCCC-------CCCCCCCHHHHHHHc
Confidence 467899866 888888888877654 4689999999999999999887311 01000 000000011111111
Q ss_pred Hhc-----CCCCCCccHHHHHHHHHHHHh----cCCcEEEEEecC-----------------CC-C-eEEEeec------
Q 038454 185 ALK-----LSLTEDEDKVSRARRLLGKLK----AKKKFVLILDDI-----------------DN-H-TFCWGLR------ 230 (359)
Q Consensus 185 ~l~-----~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv-----------------~~-g-~ilvTtr------ 230 (359)
.-. .+.......+ .++.+.+.+. .+++-++|+|++ .+ . ++|++|.
T Consensus 85 g~~~D~ieidaas~~~Vd-diR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl 163 (647)
T PRK07994 85 GRFVDLIEIDAASRTKVE-DTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (647)
T ss_pred CCCCCceeecccccCCHH-HHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccc
Confidence 000 0000001111 1222222211 126779999999 22 3 5555554
Q ss_pred ---ccceeeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHH
Q 038454 231 ---SMGCEEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTV 287 (359)
Q Consensus 231 ---~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 287 (359)
...|..|.+.+|+.++..+.+.+.+-..+. .........|++.++|.+--+..+
T Consensus 164 ~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i---~~e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 164 VTILSRCLQFHLKALDVEQIRQQLEHILQAEQI---PFEPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred hHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 234678999999999999998876532221 123456678999999988644443
No 56
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.48 E-value=4e-07 Score=84.96 Aligned_cols=89 Identities=16% Similarity=0.134 Sum_probs=61.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCC--cCHHHHHHHHHHHhcCCCCCCccHH------HHHH
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQP--LDLVKLQAEIAMALKLSLTEDEDKV------SRAR 201 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~------~~~~ 201 (359)
-..++|+|++|+|||||++.+++.+ ..++|+..+||.+.+. .++.++++.++..+-....+..... ....
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I--~~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAI--TRNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhh--cccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 4679999999999999999999984 3347999999998865 7899999998654433222111111 1112
Q ss_pred HHHHHHhcCCcEEEEEecC
Q 038454 202 RLLGKLKAKKKFVLILDDI 220 (359)
Q Consensus 202 ~l~~~l~~~k~~LlVlDdv 220 (359)
........+++++|++|++
T Consensus 246 ~Ae~~~~~GkdVVLlIDEi 264 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSI 264 (415)
T ss_pred HHHHHHHcCCCeEEEEECh
Confidence 2222323359999999999
No 57
>PRK05642 DNA replication initiation factor; Validated
Probab=98.48 E-value=7.9e-06 Score=72.22 Aligned_cols=128 Identities=19% Similarity=0.319 Sum_probs=80.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhc
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAMALKLSLTEDEDKVSRARRLLGKLKA 209 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 209 (359)
...+.|+|.+|+|||.|++.+++.+ ...-..++|++..+ +... ...+.+.+..
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~---~~~~~~v~y~~~~~------~~~~------------------~~~~~~~~~~ 97 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRF---EQRGEPAVYLPLAE------LLDR------------------GPELLDNLEQ 97 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH---HhCCCcEEEeeHHH------HHhh------------------hHHHHHhhhh
Confidence 3678999999999999999998873 11123466776432 1110 0122333332
Q ss_pred CCcEEEEEecC---------------------CCC-eEEEeec---------------cc-ceeeeecCCCChHHHHHHH
Q 038454 210 KKKFVLILDDI---------------------DNH-TFCWGLR---------------SM-GCEEVRVPPLSKEEALNLF 251 (359)
Q Consensus 210 ~k~~LlVlDdv---------------------~~g-~ilvTtr---------------~~-~~~~~~l~~L~~~ea~~lf 251 (359)
-. +||+||+ .+| .+|+|++ +. .+..+++.+++.++-.+.+
T Consensus 98 -~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il 175 (234)
T PRK05642 98 -YE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRAL 175 (234)
T ss_pred -CC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHH
Confidence 22 5777888 456 8888887 01 1235789999999999998
Q ss_pred HHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHHHH
Q 038454 252 LDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTVVG 289 (359)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~ 289 (359)
..++...+... .+++..-|++.+.|..-.+..+-.
T Consensus 176 ~~ka~~~~~~l---~~ev~~~L~~~~~~d~r~l~~~l~ 210 (234)
T PRK05642 176 QLRASRRGLHL---TDEVGHFILTRGTRSMSALFDLLE 210 (234)
T ss_pred HHHHHHcCCCC---CHHHHHHHHHhcCCCHHHHHHHHH
Confidence 86654332212 256777788888776655544433
No 58
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.47 E-value=1.1e-05 Score=78.16 Aligned_cols=162 Identities=18% Similarity=0.271 Sum_probs=95.2
Q ss_pred cccccccchHHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHcCcccccC-C-----------------CccEEE
Q 038454 106 TTTLVGENTKKIVKKVWEDLMGDKV-TKIGVWGMGGFGKTAIMRHINNRPQEETN-E-----------------FSDVIW 166 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-~-----------------F~~~~w 166 (359)
-..++|.+. ....|...+.++.+ ..+.++|++|+||||+|+.+++.+..... . +..+..
T Consensus 13 ~~divGq~~--i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~e 90 (472)
T PRK14962 13 FSEVVGQDH--VKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIE 90 (472)
T ss_pred HHHccCcHH--HHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEE
Confidence 457999865 77777777877766 45899999999999999999887311000 0 001222
Q ss_pred EEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhcCCcEEEEEecC-----------------CCC--eEEE
Q 038454 167 VTVSQPLDLVKLQAEIAMALKLSLTEDEDKVSRARRLLGKLKAKKKFVLILDDI-----------------DNH--TFCW 227 (359)
Q Consensus 167 v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv-----------------~~g--~ilv 227 (359)
++.+...+...+ +.+...... ....+ ++-++|+|++ .++ .+++
T Consensus 91 l~aa~~~gid~i-R~i~~~~~~----------------~p~~~-~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Il 152 (472)
T PRK14962 91 LDAASNRGIDEI-RKIRDAVGY----------------RPMEG-KYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVL 152 (472)
T ss_pred EeCcccCCHHHH-HHHHHHHhh----------------ChhcC-CeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEE
Confidence 222211112111 111111110 00112 5678999998 234 3333
Q ss_pred e-ec--------ccceeeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCC-chhHHHHHHHh
Q 038454 228 G-LR--------SMGCEEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAG-LQLAIFTVVGC 290 (359)
Q Consensus 228 T-tr--------~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g-~Plai~~~~~~ 290 (359)
+ +. ...+..+.+.+++.++....+...+...+. .-..+....|++.++| ++.++..+-.+
T Consensus 153 attn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi---~i~~eal~~Ia~~s~GdlR~aln~Le~l 222 (472)
T PRK14962 153 ATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGI---EIDREALSFIAKRASGGLRDALTMLEQV 222 (472)
T ss_pred EeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 4 32 234567899999999999988887643322 1224567778887754 56776666554
No 59
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.46 E-value=5.4e-06 Score=81.21 Aligned_cols=157 Identities=14% Similarity=0.206 Sum_probs=95.2
Q ss_pred cccccccchHHHHHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHcCcccccC-------------------CCccEE
Q 038454 106 TTTLVGENTKKIVKKVWEDLMGDKVT-KIGVWGMGGFGKTAIMRHINNRPQEETN-------------------EFSDVI 165 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------~F~~~~ 165 (359)
-..+||.+. .+..|..++..+.++ .+.++|+.|+||||+|+.+++.+. -.. .|.-++
T Consensus 15 f~divGq~~--v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~-c~~~~~~~pCg~C~~C~~i~~g~~~d~~ 91 (509)
T PRK14958 15 FQEVIGQAP--VVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLN-CEKGVSANPCNDCENCREIDEGRFPDLF 91 (509)
T ss_pred HHHhcCCHH--HHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhc-CCCCCCcccCCCCHHHHHHhcCCCceEE
Confidence 457899966 888999999877655 578999999999999999988731 111 111123
Q ss_pred EEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhcCCcEEEEEecC------------------CCC-eEE
Q 038454 166 WVTVSQPLDLVKLQAEIAMALKLSLTEDEDKVSRARRLLGKLKAKKKFVLILDDI------------------DNH-TFC 226 (359)
Q Consensus 166 wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv------------------~~g-~il 226 (359)
.++......+.++ +.++..+.... ..+ +.-++|+|++ .+. .+|
T Consensus 92 eidaas~~~v~~i-R~l~~~~~~~p----------------~~~-~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fI 153 (509)
T PRK14958 92 EVDAASRTKVEDT-RELLDNIPYAP----------------TKG-RFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFI 153 (509)
T ss_pred EEcccccCCHHHH-HHHHHHHhhcc----------------ccC-CcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEE
Confidence 3332222222222 22222221110 112 5668889999 234 555
Q ss_pred Eeec---------ccceeeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHH
Q 038454 227 WGLR---------SMGCEEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFT 286 (359)
Q Consensus 227 vTtr---------~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~ 286 (359)
++|. ...|..+.+.+++.++....+.+.+-..+. .-..+....|++.++|.+.-+..
T Consensus 154 lattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi---~~~~~al~~ia~~s~GslR~al~ 219 (509)
T PRK14958 154 LATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENV---EFENAALDLLARAANGSVRDALS 219 (509)
T ss_pred EEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCcHHHHHH
Confidence 5443 223556899999999988877766533322 11245567788899998755443
No 60
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.46 E-value=5.5e-06 Score=82.56 Aligned_cols=158 Identities=15% Similarity=0.223 Sum_probs=96.8
Q ss_pred cccccccchHHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHcCcccccCC-------------------CccEE
Q 038454 106 TTTLVGENTKKIVKKVWEDLMGDKV-TKIGVWGMGGFGKTAIMRHINNRPQEETNE-------------------FSDVI 165 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~-------------------F~~~~ 165 (359)
-..++|.+. .+..|..++..+++ ..+.++|+.|+||||+|+.+++.+. -... |..++
T Consensus 15 FddIIGQe~--vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~Ln-C~~~~~~~pCg~C~sCr~i~~g~~~Dvl 91 (709)
T PRK08691 15 FADLVGQEH--VVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLN-CENAQHGEPCGVCQSCTQIDAGRYVDLL 91 (709)
T ss_pred HHHHcCcHH--HHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhc-ccCCCCCCCCcccHHHHHHhccCccceE
Confidence 467999966 88889998887765 4689999999999999999988631 1110 10111
Q ss_pred EEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHH-HhcCCcEEEEEecC------------------CCC-eE
Q 038454 166 WVTVSQPLDLVKLQAEIAMALKLSLTEDEDKVSRARRLLGK-LKAKKKFVLILDDI------------------DNH-TF 225 (359)
Q Consensus 166 wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~~k~~LlVlDdv------------------~~g-~i 225 (359)
.++......+. +..+.+...... ..+ ++-++|+|++ ... ++
T Consensus 92 EidaAs~~gVd------------------~IRelle~a~~~P~~g-k~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~f 152 (709)
T PRK08691 92 EIDAASNTGID------------------NIREVLENAQYAPTAG-KYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKF 152 (709)
T ss_pred EEeccccCCHH------------------HHHHHHHHHHhhhhhC-CcEEEEEECccccCHHHHHHHHHHHHhCCCCcEE
Confidence 12111111111 111111111100 123 6678899998 233 66
Q ss_pred EEeec---------ccceeeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHHH
Q 038454 226 CWGLR---------SMGCEEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTVV 288 (359)
Q Consensus 226 lvTtr---------~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~ 288 (359)
|++|. ...|..+.+.+++.++....+.+.+-..+. .-..+....|++.++|.+.-+..+.
T Consensus 153 ILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi---~id~eAL~~Ia~~A~GslRdAlnLL 221 (709)
T PRK08691 153 ILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKI---AYEPPALQLLGRAAAGSMRDALSLL 221 (709)
T ss_pred EEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCC---CcCHHHHHHHHHHhCCCHHHHHHHH
Confidence 66665 223456889999999999998887644332 1234677889999999886554443
No 61
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.46 E-value=3.8e-06 Score=87.23 Aligned_cols=158 Identities=14% Similarity=0.181 Sum_probs=93.3
Q ss_pred ccccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHcCcccc--cCC-CccEEE-EEeCCCcCHHHHHHHH
Q 038454 107 TTLVGENTKKIVKKVWEDLMGDKVTKIGVWGMGGFGKTAIMRHINNRPQEE--TNE-FSDVIW-VTVSQPLDLVKLQAEI 182 (359)
Q Consensus 107 ~~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~~-F~~~~w-v~~~~~~~~~~~~~~i 182 (359)
.+++||+. ++..++..|......-+.++|.+|+||||+|..+++++... ... ....+| +.++.
T Consensus 187 d~~iGr~~--ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~----------- 253 (852)
T TIGR03345 187 DPVLGRDD--EIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGL----------- 253 (852)
T ss_pred CcccCCHH--HHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhh-----------
Confidence 57999976 89999999988777778899999999999999999884111 001 122232 22221
Q ss_pred HHHhcCCCCCCccHHHHHHHHHHHHh-cCCcEEEEEecC-----------------------CCC--eEEEeec------
Q 038454 183 AMALKLSLTEDEDKVSRARRLLGKLK-AKKKFVLILDDI-----------------------DNH--TFCWGLR------ 230 (359)
Q Consensus 183 ~~~l~~~~~~~~~~~~~~~~l~~~l~-~~k~~LlVlDdv-----------------------~~g--~ilvTtr------ 230 (359)
+..........+..+..+.+.+. .+++.+|++|++ ..| ++|-+|.
T Consensus 254 ---l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G~l~~IgaTT~~e~~~ 330 (852)
T TIGR03345 254 ---LQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARGELRTIAATTWAEYKK 330 (852)
T ss_pred ---hhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCCCeEEEEecCHHHHhh
Confidence 00000011122233333333332 236889999988 345 5555555
Q ss_pred --------ccceeeeecCCCChHHHHHHHHHhhcCCC-CCCCCchHHHHHHHHHHcCCc
Q 038454 231 --------SMGCEEVRVPPLSKEEALNLFLDKVGRNI-LHVPTLNEEIINSVVEECAGL 280 (359)
Q Consensus 231 --------~~~~~~~~l~~L~~~ea~~lf~~~~~~~~-~~~~~~~~~~~~~i~~~c~g~ 280 (359)
....+.+.+++++.++..+++....-.-. ...-.-..+....+++.+.+.
T Consensus 331 ~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 331 YFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred hhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 11235799999999999999755432111 111112245556666666543
No 62
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.46 E-value=7.1e-06 Score=72.22 Aligned_cols=148 Identities=14% Similarity=0.209 Sum_probs=85.7
Q ss_pred cccc-ccchHHHHHHHHHHhcC-CCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHH
Q 038454 107 TTLV-GENTKKIVKKVWEDLMG-DKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAM 184 (359)
Q Consensus 107 ~~~v-Gr~~~~~~~~l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 184 (359)
++|+ |.. ...+..+..+... .....+.|+|.+|+|||+||+.+++.. . .... ...+++...... .+
T Consensus 18 d~f~~~~~-~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~-~-~~~~-~~~~i~~~~~~~------~~-- 85 (227)
T PRK08903 18 DNFVAGEN-AELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADA-S-YGGR-NARYLDAASPLL------AF-- 85 (227)
T ss_pred cccccCCc-HHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHH-H-hCCC-cEEEEehHHhHH------HH--
Confidence 3445 433 3344555555442 345689999999999999999999872 1 2222 244555433110 00
Q ss_pred HhcCCCCCCccHHHHHHHHHHHHhcCCcEEEEEecC-------------------CCC-e-EEEeec-------------
Q 038454 185 ALKLSLTEDEDKVSRARRLLGKLKAKKKFVLILDDI-------------------DNH-T-FCWGLR------------- 230 (359)
Q Consensus 185 ~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv-------------------~~g-~-ilvTtr------------- 230 (359)
... . ..-+||+||+ ..+ . +++|++
T Consensus 86 --------------------~~~-~-~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~ 143 (227)
T PRK08903 86 --------------------DFD-P-EAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLR 143 (227)
T ss_pred --------------------hhc-c-cCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHH
Confidence 001 1 2335666777 233 2 555554
Q ss_pred -c-cceeeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHHHHhh
Q 038454 231 -S-MGCEEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTVVGCM 291 (359)
Q Consensus 231 -~-~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~L 291 (359)
. ..+..+.+++++.++-..++.+.+-..+. .-..+....+++.+.|.+..+..+...|
T Consensus 144 sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v---~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 144 TRLGWGLVYELKPLSDADKIAALKAAAAERGL---QLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHhcCeEEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 0 11256899999998877776664422222 1234677788888999988887666554
No 63
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.45 E-value=1.6e-05 Score=77.65 Aligned_cols=167 Identities=19% Similarity=0.224 Sum_probs=92.8
Q ss_pred cccccccchHHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHcCcccccCCCcc-EEEEEeCCCcCHHHHHHHHH
Q 038454 106 TTTLVGENTKKIVKKVWEDLMGDKV-TKIGVWGMGGFGKTAIMRHINNRPQEETNEFSD-VIWVTVSQPLDLVKLQAEIA 183 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~-~~wv~~~~~~~~~~~~~~i~ 183 (359)
-..++|.+. .+..|...+..++. ..+.++|+.|+||||+|+.+++.+. -...... -.+..+... .....+.
T Consensus 20 f~dliGq~~--vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Ln-c~~~~~~~~~~~~C~~C----~~C~~i~ 92 (507)
T PRK06645 20 FAELQGQEV--LVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVN-CSALITENTTIKTCEQC----TNCISFN 92 (507)
T ss_pred HHHhcCcHH--HHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhc-CccccccCcCcCCCCCC----hHHHHHh
Confidence 457889865 77777777766654 6899999999999999999988731 1000000 000000000 0000110
Q ss_pred HHhcC-----CCCCCccHHHHHHHHHHH-----HhcCCcEEEEEecC------------------CCC-eEEE-eec---
Q 038454 184 MALKL-----SLTEDEDKVSRARRLLGK-----LKAKKKFVLILDDI------------------DNH-TFCW-GLR--- 230 (359)
Q Consensus 184 ~~l~~-----~~~~~~~~~~~~~~l~~~-----l~~~k~~LlVlDdv------------------~~g-~ilv-Ttr--- 230 (359)
..... +.......++. +.+.+. +.+ ++-++|+|++ .+. .+|+ ||+
T Consensus 93 ~~~h~Dv~eidaas~~~vd~I-r~iie~a~~~P~~~-~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~k 170 (507)
T PRK06645 93 NHNHPDIIEIDAASKTSVDDI-RRIIESAEYKPLQG-KHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQK 170 (507)
T ss_pred cCCCCcEEEeeccCCCCHHHH-HHHHHHHHhccccC-CcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHH
Confidence 00000 00000111111 111111 123 6778999998 233 4444 444
Q ss_pred -----ccceeeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHH
Q 038454 231 -----SMGCEEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAI 284 (359)
Q Consensus 231 -----~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai 284 (359)
...+..+++.+++.++..+.+...+...+. .-..+....|++.++|.+--+
T Consensus 171 I~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi---~ie~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 171 IPATIISRCQRYDLRRLSFEEIFKLLEYITKQENL---KTDIEALRIIAYKSEGSARDA 226 (507)
T ss_pred hhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHH
Confidence 234567899999999999999888754332 122456677999999987544
No 64
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.44 E-value=1.1e-05 Score=68.90 Aligned_cols=137 Identities=18% Similarity=0.228 Sum_probs=80.6
Q ss_pred HHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHcCccccc--C----------------CCccEEEEEeCC-CcCHHHHH
Q 038454 120 KVWEDLMGDKV-TKIGVWGMGGFGKTAIMRHINNRPQEET--N----------------EFSDVIWVTVSQ-PLDLVKLQ 179 (359)
Q Consensus 120 ~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~----------------~F~~~~wv~~~~-~~~~~~~~ 179 (359)
.|.+.+..+.. ..+.++|+.|+||||+|+.+.+.+.... + .+....++.... .... +..
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~-~~i 81 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKV-DQV 81 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCH-HHH
Confidence 34555556655 6799999999999999999988731110 0 111112222111 1111 111
Q ss_pred HHHHHHhcCCCCCCccHHHHHHHHHHHHhcCCcEEEEEecC------------------CCC-eEEEeec---------c
Q 038454 180 AEIAMALKLSLTEDEDKVSRARRLLGKLKAKKKFVLILDDI------------------DNH-TFCWGLR---------S 231 (359)
Q Consensus 180 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv------------------~~g-~ilvTtr---------~ 231 (359)
+.+...+.... ..+ .+-++|+||+ .+. .++++|+ .
T Consensus 82 ~~i~~~~~~~~----------------~~~-~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~ 144 (188)
T TIGR00678 82 RELVEFLSRTP----------------QES-GRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIR 144 (188)
T ss_pred HHHHHHHccCc----------------ccC-CeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHH
Confidence 12222221110 112 5667888888 233 5555554 2
Q ss_pred cceeeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhH
Q 038454 232 MGCEEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLA 283 (359)
Q Consensus 232 ~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pla 283 (359)
..+..+.+.+++.++..+.+.+. + . ..+.+..|++.++|.|..
T Consensus 145 sr~~~~~~~~~~~~~~~~~l~~~--g----i---~~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 145 SRCQVLPFPPLSEEALLQWLIRQ--G----I---SEEAAELLLALAGGSPGA 187 (188)
T ss_pred hhcEEeeCCCCCHHHHHHHHHHc--C----C---CHHHHHHHHHHcCCCccc
Confidence 23467999999999999888876 1 1 146788999999998853
No 65
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.44 E-value=8.5e-06 Score=80.33 Aligned_cols=168 Identities=14% Similarity=0.216 Sum_probs=93.7
Q ss_pred cccccccchHHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHH
Q 038454 106 TTTLVGENTKKIVKKVWEDLMGDKV-TKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAM 184 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 184 (359)
-..++|++. .+..+..++..+.+ +.+.++|+.|+||||+|+.+++.+ ...+ |... ..++.-..++.+..
T Consensus 15 F~dIIGQe~--iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L--~C~~-----~~~~-~~Cg~C~sCr~i~~ 84 (605)
T PRK05896 15 FKQIIGQEL--IKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAI--NCLN-----PKDG-DCCNSCSVCESINT 84 (605)
T ss_pred HHHhcCcHH--HHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHh--cCCC-----CCCC-CCCcccHHHHHHHc
Confidence 467899966 88888888877654 578999999999999999998873 1101 1110 00011111111111
Q ss_pred HhcC-----CCCCCccHHHHHHHHHHHH-----hcCCcEEEEEecC-----------------CC-C-eEEEee-c----
Q 038454 185 ALKL-----SLTEDEDKVSRARRLLGKL-----KAKKKFVLILDDI-----------------DN-H-TFCWGL-R---- 230 (359)
Q Consensus 185 ~l~~-----~~~~~~~~~~~~~~l~~~l-----~~~k~~LlVlDdv-----------------~~-g-~ilvTt-r---- 230 (359)
.... ........+ .++.+.+.. .+ ++-++|+|++ .+ . .+|++| .
T Consensus 85 ~~h~DiieIdaas~igVd-~IReIi~~~~~~P~~~-~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KL 162 (605)
T PRK05896 85 NQSVDIVELDAASNNGVD-EIRNIIDNINYLPTTF-KYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKI 162 (605)
T ss_pred CCCCceEEeccccccCHH-HHHHHHHHHHhchhhC-CcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhh
Confidence 1000 000001111 112222111 12 3446999998 23 3 444444 3
Q ss_pred ----ccceeeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchh-HHHHHH
Q 038454 231 ----SMGCEEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQL-AIFTVV 288 (359)
Q Consensus 231 ----~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pl-ai~~~~ 288 (359)
...|..+++.+++.++....+...+...+. .-..+.+..+++.++|.+- |+..+-
T Consensus 163 l~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi---~Is~eal~~La~lS~GdlR~AlnlLe 222 (605)
T PRK05896 163 PLTIISRCQRYNFKKLNNSELQELLKSIAKKEKI---KIEDNAIDKIADLADGSLRDGLSILD 222 (605)
T ss_pred hHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCcHHHHHHHHH
Confidence 234567999999999999888886643321 1124567889999999664 444433
No 66
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.43 E-value=1.7e-06 Score=69.82 Aligned_cols=57 Identities=21% Similarity=0.291 Sum_probs=42.3
Q ss_pred ccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCC
Q 038454 111 GENTKKIVKKVWEDLMGDKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQP 172 (359)
Q Consensus 111 Gr~~~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~ 172 (359)
|++. .+..+...+..+..+.+.|+|.+|+|||++++.+++.+. ..-..++++.....
T Consensus 2 ~~~~--~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~---~~~~~v~~~~~~~~ 58 (151)
T cd00009 2 GQEE--AIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELF---RPGAPFLYLNASDL 58 (151)
T ss_pred chHH--HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhh---cCCCCeEEEehhhh
Confidence 4544 778888888776678899999999999999999999831 22234666665543
No 67
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.43 E-value=4e-06 Score=86.19 Aligned_cols=134 Identities=19% Similarity=0.244 Sum_probs=84.8
Q ss_pred ccccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHcCccccc--CCC-ccEEEEEeCCCcCHHHHHHHHH
Q 038454 107 TTLVGENTKKIVKKVWEDLMGDKVTKIGVWGMGGFGKTAIMRHINNRPQEET--NEF-SDVIWVTVSQPLDLVKLQAEIA 183 (359)
Q Consensus 107 ~~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~~F-~~~~wv~~~~~~~~~~~~~~i~ 183 (359)
++++||+. ++..++..|......-+.++|++|+|||++|+.+++++.... ..+ ...+|. + +...+.
T Consensus 182 ~~~igr~~--ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~----~~~~l~---- 250 (731)
T TIGR02639 182 DPLIGRED--ELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-L----DMGSLL---- 250 (731)
T ss_pred CcccCcHH--HHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-e----cHHHHh----
Confidence 57999976 899999988877777788999999999999999998842111 111 233432 1 111111
Q ss_pred HHhcCCCCCCccHHHHHHHHHHHHhcCCcEEEEEecC------------------------CCC--eEEEeec-------
Q 038454 184 MALKLSLTEDEDKVSRARRLLGKLKAKKKFVLILDDI------------------------DNH--TFCWGLR------- 230 (359)
Q Consensus 184 ~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv------------------------~~g--~ilvTtr------- 230 (359)
.. .......+..+..+.+.+...++.+|++|++ .+| .+|-+|.
T Consensus 251 a~----~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g~i~~IgaTt~~e~~~~ 326 (731)
T TIGR02639 251 AG----TKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSGKLRCIGSTTYEEYKNH 326 (731)
T ss_pred hh----ccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCCCeEEEEecCHHHHHHH
Confidence 00 0001233444555555544336789999988 234 4444443
Q ss_pred -------ccceeeeecCCCChHHHHHHHHHhh
Q 038454 231 -------SMGCEEVRVPPLSKEEALNLFLDKV 255 (359)
Q Consensus 231 -------~~~~~~~~l~~L~~~ea~~lf~~~~ 255 (359)
....+.+.+++++.++..+++....
T Consensus 327 ~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 327 FEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred hhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 1123568999999999999998654
No 68
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.38 E-value=3.9e-06 Score=87.30 Aligned_cols=133 Identities=17% Similarity=0.252 Sum_probs=85.1
Q ss_pred ccccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHcCcccccC--CC-ccEEEEEeCCCcCHHHHHHHHH
Q 038454 107 TTLVGENTKKIVKKVWEDLMGDKVTKIGVWGMGGFGKTAIMRHINNRPQEETN--EF-SDVIWVTVSQPLDLVKLQAEIA 183 (359)
Q Consensus 107 ~~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--~F-~~~~wv~~~~~~~~~~~~~~i~ 183 (359)
.+++||+. ++..++..|......-+.++|++|+|||++|..+++.+....- .. ...+|. + +...++.
T Consensus 179 ~~~igr~~--ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~a--- 248 (821)
T CHL00095 179 DPVIGREK--EIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLLA--- 248 (821)
T ss_pred CCCCCcHH--HHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHhc---
Confidence 56899976 9999999998876677889999999999999999988421111 11 234442 1 2211111
Q ss_pred HHhcCCCCCCccHHHHHHHHHHHHhcCCcEEEEEecC-----------------------CCC--eEEEeec--------
Q 038454 184 MALKLSLTEDEDKVSRARRLLGKLKAKKKFVLILDDI-----------------------DNH--TFCWGLR-------- 230 (359)
Q Consensus 184 ~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv-----------------------~~g--~ilvTtr-------- 230 (359)
+... ....+..+..+.+.+...++.+|++|++ ..| ++|.+|.
T Consensus 249 ---g~~~--~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg~l~~IgaTt~~ey~~~i 323 (821)
T CHL00095 249 ---GTKY--RGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHI 323 (821)
T ss_pred ---cCCC--ccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCCCcEEEEeCCHHHHHHHH
Confidence 1111 1234445555555554447899999999 234 5555554
Q ss_pred ------ccceeeeecCCCChHHHHHHHHHh
Q 038454 231 ------SMGCEEVRVPPLSKEEALNLFLDK 254 (359)
Q Consensus 231 ------~~~~~~~~l~~L~~~ea~~lf~~~ 254 (359)
......+.+...+.++...++...
T Consensus 324 e~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 324 EKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred hcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 112356788899999988887653
No 69
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.38 E-value=3.1e-05 Score=74.83 Aligned_cols=178 Identities=18% Similarity=0.193 Sum_probs=107.3
Q ss_pred ccccchHHHHHHHHHHhcCC-CccEEEEEcCCCCcHHHHHHHHHcCcccccCCCc-cEEEEEeCCCcCHHHHHHHHHHHh
Q 038454 109 LVGENTKKIVKKVWEDLMGD-KVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFS-DVIWVTVSQPLDLVKLQAEIAMAL 186 (359)
Q Consensus 109 ~vGr~~~~~~~~l~~~l~~~-~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~-~~~wv~~~~~~~~~~~~~~i~~~l 186 (359)
++|............+..+. ....+.|+|.+|+|||+|++.+++.+ ...+.. .++|++. .+++..+...+
T Consensus 108 v~g~~n~~a~~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l--~~~~~~~~v~yi~~------~~f~~~~~~~~ 179 (440)
T PRK14088 108 VVGPGNSFAYHAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYV--VQNEPDLRVMYITS------EKFLNDLVDSM 179 (440)
T ss_pred ccCCchHHHHHHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHH--HHhCCCCeEEEEEH------HHHHHHHHHHH
Confidence 44654433334444444433 24569999999999999999999983 222222 3566653 44556665555
Q ss_pred cCCCCCCccHHHHHHHHHHHHhcCCcEEEEEecC---------------------CCC-eEEEeec--------------
Q 038454 187 KLSLTEDEDKVSRARRLLGKLKAKKKFVLILDDI---------------------DNH-TFCWGLR-------------- 230 (359)
Q Consensus 187 ~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv---------------------~~g-~ilvTtr-------------- 230 (359)
... . ...+.+.+.. ..-+|++||+ ..| .+++||.
T Consensus 180 ~~~-----~----~~~f~~~~~~-~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~ 249 (440)
T PRK14088 180 KEG-----K----LNEFREKYRK-KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLV 249 (440)
T ss_pred hcc-----c----HHHHHHHHHh-cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHh
Confidence 321 1 1223333333 4568899999 346 7888885
Q ss_pred -ccc-eeeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHHHHh------h-cCCCChhHHH
Q 038454 231 -SMG-CEEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTVVGC------M-RGVDEIHEWR 301 (359)
Q Consensus 231 -~~~-~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~------L-~~~~~~~~w~ 301 (359)
+.. .-.+.+++.+.+.-..++.+.+....... ..++...|++.+.|..-.+.-+-.. + ...-+.....
T Consensus 250 SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l---~~ev~~~Ia~~~~~~~R~L~g~l~~l~~~~~~~~~~it~~~a~ 326 (440)
T PRK14088 250 SRFQMGLVAKLEPPDEETRKKIARKMLEIEHGEL---PEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGEEVDLKEAI 326 (440)
T ss_pred hHHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHhccccCHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 111 23578999999999999988874332212 2567788888888765444322211 1 2225666666
Q ss_pred HHHHHH
Q 038454 302 NALNEL 307 (359)
Q Consensus 302 ~~l~~~ 307 (359)
.++...
T Consensus 327 ~~L~~~ 332 (440)
T PRK14088 327 LLLKDF 332 (440)
T ss_pred HHHHHH
Confidence 677654
No 70
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.38 E-value=2.6e-05 Score=74.87 Aligned_cols=177 Identities=18% Similarity=0.233 Sum_probs=107.0
Q ss_pred ccccchHHHHHHHHHHhcCC--CccEEEEEcCCCCcHHHHHHHHHcCcccccCCC-ccEEEEEeCCCcCHHHHHHHHHHH
Q 038454 109 LVGENTKKIVKKVWEDLMGD--KVTKIGVWGMGGFGKTAIMRHINNRPQEETNEF-SDVIWVTVSQPLDLVKLQAEIAMA 185 (359)
Q Consensus 109 ~vGr~~~~~~~~l~~~l~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F-~~~~wv~~~~~~~~~~~~~~i~~~ 185 (359)
++|............+.... ....+.|+|.+|+|||+|++++++.+. .... ..++|++. .++...+...
T Consensus 113 i~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l~--~~~~~~~v~yi~~------~~~~~~~~~~ 184 (405)
T TIGR00362 113 VVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEIL--ENNPNAKVVYVSS------EKFTNDFVNA 184 (405)
T ss_pred ccCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHHHH--HhCCCCcEEEEEH------HHHHHHHHHH
Confidence 45655433344444444332 235689999999999999999999831 1211 23556643 3444455554
Q ss_pred hcCCCCCCccHHHHHHHHHHHHhcCCcEEEEEecC---------------------CCC-eEEEeec-------------
Q 038454 186 LKLSLTEDEDKVSRARRLLGKLKAKKKFVLILDDI---------------------DNH-TFCWGLR------------- 230 (359)
Q Consensus 186 l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv---------------------~~g-~ilvTtr------------- 230 (359)
+... . ...+.+.+.. .-+|+|||+ ..| .+++|+.
T Consensus 185 ~~~~-----~----~~~~~~~~~~--~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l 253 (405)
T TIGR00362 185 LRNN-----K----MEEFKEKYRS--VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERL 253 (405)
T ss_pred HHcC-----C----HHHHHHHHHh--CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhh
Confidence 4321 1 2233344432 348889999 356 7888886
Q ss_pred --ccc-eeeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHHHHh-------hcCCCChhHH
Q 038454 231 --SMG-CEEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTVVGC-------MRGVDEIHEW 300 (359)
Q Consensus 231 --~~~-~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~-------L~~~~~~~~w 300 (359)
+.. ...+.+++.+.++-..++.+.+...+... .+++...|++.+.|.+-.+.-+-.. ....-+.+..
T Consensus 254 ~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l---~~e~l~~ia~~~~~~~r~l~~~l~~l~~~a~~~~~~it~~~~ 330 (405)
T TIGR00362 254 RSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLEL---PDEVLEFIAKNIRSNVRELEGALNRLLAYASLTGKPITLELA 330 (405)
T ss_pred hhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 111 13589999999999999998875433212 2577888899988877654332211 1222566677
Q ss_pred HHHHHHH
Q 038454 301 RNALNEL 307 (359)
Q Consensus 301 ~~~l~~~ 307 (359)
+.++...
T Consensus 331 ~~~L~~~ 337 (405)
T TIGR00362 331 KEALKDL 337 (405)
T ss_pred HHHHHHh
Confidence 7777765
No 71
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.36 E-value=2.8e-05 Score=73.60 Aligned_cols=156 Identities=12% Similarity=0.230 Sum_probs=92.3
Q ss_pred cccccccchHHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHcCccc-----ccCCCcc-EEEEEeCCCcCHHHH
Q 038454 106 TTTLVGENTKKIVKKVWEDLMGDKV-TKIGVWGMGGFGKTAIMRHINNRPQE-----ETNEFSD-VIWVTVSQPLDLVKL 178 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~-----~~~~F~~-~~wv~~~~~~~~~~~ 178 (359)
-..++|.+. .++.+..++.++.. +.+.++|++|+||||+|..+++.+.. ....|.. ++-++.....+...
T Consensus 16 ~~~iig~~~--~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~- 92 (367)
T PRK14970 16 FDDVVGQSH--ITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDD- 92 (367)
T ss_pred HHhcCCcHH--HHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHH-
Confidence 457889866 88889999887654 48999999999999999999887311 0111221 11111111111111
Q ss_pred HHHHHHHhcCCCCCCccHHHHHHHHHHHHhcCCcEEEEEecC------------------CCC-eEEEeec---------
Q 038454 179 QAEIAMALKLSLTEDEDKVSRARRLLGKLKAKKKFVLILDDI------------------DNH-TFCWGLR--------- 230 (359)
Q Consensus 179 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv------------------~~g-~ilvTtr--------- 230 (359)
...++..+... ...+ ++-++++|++ ... .+|++|.
T Consensus 93 i~~l~~~~~~~----------------p~~~-~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l 155 (367)
T PRK14970 93 IRNLIDQVRIP----------------PQTG-KYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTI 155 (367)
T ss_pred HHHHHHHHhhc----------------cccC-CcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHH
Confidence 12222222110 0112 4457888887 123 4444443
Q ss_pred ccceeeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHH
Q 038454 231 SMGCEEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAI 284 (359)
Q Consensus 231 ~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai 284 (359)
...+..+++.+++.++....+...+...+... ..+.+..++..++|.+-.+
T Consensus 156 ~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i---~~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 156 LSRCQIFDFKRITIKDIKEHLAGIAVKEGIKF---EDDALHIIAQKADGALRDA 206 (367)
T ss_pred HhcceeEecCCccHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHhCCCCHHHH
Confidence 22345789999999999998888764433212 2467788888898866543
No 72
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.35 E-value=4.1e-05 Score=72.11 Aligned_cols=159 Identities=15% Similarity=0.233 Sum_probs=95.4
Q ss_pred cccccccchHHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHcCcccc-cC------------------CCccEE
Q 038454 106 TTTLVGENTKKIVKKVWEDLMGDKV-TKIGVWGMGGFGKTAIMRHINNRPQEE-TN------------------EFSDVI 165 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~------------------~F~~~~ 165 (359)
-..++|.+. .++.|..++.++.. ..+.++|++|+||||+|+.++..+.-. .. +++ ..
T Consensus 13 ~~~iig~~~--~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~-~~ 89 (355)
T TIGR02397 13 FEDVIGQEH--IVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLD-VI 89 (355)
T ss_pred HhhccCcHH--HHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCC-EE
Confidence 457899866 88899888877754 468899999999999999998763100 00 122 22
Q ss_pred EEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhcCCcEEEEEecC-----------------CCC--eEE
Q 038454 166 WVTVSQPLDLVKLQAEIAMALKLSLTEDEDKVSRARRLLGKLKAKKKFVLILDDI-----------------DNH--TFC 226 (359)
Q Consensus 166 wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv-----------------~~g--~il 226 (359)
+++......... .+.+...+.... ..+ ++-++|+|++ .++ .+|
T Consensus 90 ~~~~~~~~~~~~-~~~l~~~~~~~p----------------~~~-~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lI 151 (355)
T TIGR02397 90 EIDAASNNGVDD-IREILDNVKYAP----------------SSG-KYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFI 151 (355)
T ss_pred EeeccccCCHHH-HHHHHHHHhcCc----------------ccC-CceEEEEeChhhcCHHHHHHHHHHHhCCccceeEE
Confidence 332221111111 122222221100 112 4557788887 223 444
Q ss_pred Eeec---------ccceeeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHHH
Q 038454 227 WGLR---------SMGCEEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTVV 288 (359)
Q Consensus 227 vTtr---------~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~ 288 (359)
++|. ...+..+++.+++.++..+.+...+-..+... ..+.+..+++.++|.|..+....
T Consensus 152 l~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i---~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 152 LATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKI---EDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred EEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCChHHHHHHH
Confidence 5554 12345789999999999998888764333211 24677889999999987665444
No 73
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.34 E-value=1.2e-05 Score=76.73 Aligned_cols=175 Identities=14% Similarity=0.231 Sum_probs=94.9
Q ss_pred cccccccchHHHHHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEE-eCCCcCHHHHHHHHH
Q 038454 106 TTTLVGENTKKIVKKVWEDLMGDKVT-KIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVT-VSQPLDLVKLQAEIA 183 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~-~~~~~~~~~~~~~i~ 183 (359)
-..++|.+. .++.|..++.+++++ .+.++|+.|+||||+|..+++.+. -........|.. ...+...=...+.+.
T Consensus 15 ~~eiiGq~~--~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~-c~~~~~~~~~~~~~~~~c~~c~~c~~~~ 91 (397)
T PRK14955 15 FADITAQEH--ITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVN-CQRMIDDADYLQEVTEPCGECESCRDFD 91 (397)
T ss_pred HhhccChHH--HHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhc-CCCCcCcccccccCCCCCCCCHHHHHHh
Confidence 467899865 788888888887665 588999999999999999988731 111110000100 000000001111111
Q ss_pred HHhcCCC---CC-CccHHHHHHHHHHHHhc----CCcEEEEEecC------------------CCC-eEEEee-c-----
Q 038454 184 MALKLSL---TE-DEDKVSRARRLLGKLKA----KKKFVLILDDI------------------DNH-TFCWGL-R----- 230 (359)
Q Consensus 184 ~~l~~~~---~~-~~~~~~~~~~l~~~l~~----~k~~LlVlDdv------------------~~g-~ilvTt-r----- 230 (359)
.....+. .. .....+.+..+.+.+.. ..+-++|+|++ .+. .+|++| +
T Consensus 92 ~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~ 171 (397)
T PRK14955 92 AGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIP 171 (397)
T ss_pred cCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhH
Confidence 1000000 00 00101122223333311 25568889988 234 444444 4
Q ss_pred ---ccceeeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHH
Q 038454 231 ---SMGCEEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFT 286 (359)
Q Consensus 231 ---~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~ 286 (359)
...+..+++.+++.++..+.+...+-..+. .-..+.+..|++.++|.+--+..
T Consensus 172 ~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~---~i~~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 172 ATIASRCQRFNFKRIPLEEIQQQLQGICEAEGI---SVDADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHH
Confidence 112456899999999998888876533221 12356788899999998754443
No 74
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.34 E-value=3.1e-05 Score=75.26 Aligned_cols=176 Identities=17% Similarity=0.219 Sum_probs=107.7
Q ss_pred ccccchHHHHHHHHHHhcCC--CccEEEEEcCCCCcHHHHHHHHHcCcccccCCC--ccEEEEEeCCCcCHHHHHHHHHH
Q 038454 109 LVGENTKKIVKKVWEDLMGD--KVTKIGVWGMGGFGKTAIMRHINNRPQEETNEF--SDVIWVTVSQPLDLVKLQAEIAM 184 (359)
Q Consensus 109 ~vGr~~~~~~~~l~~~l~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F--~~~~wv~~~~~~~~~~~~~~i~~ 184 (359)
++|............+..+. ....+.|+|.+|+|||+|++.+++.+ ...+ ..++|++. .++...+..
T Consensus 125 v~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~---~~~~~~~~v~yi~~------~~~~~~~~~ 195 (450)
T PRK00149 125 VVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYI---LEKNPNAKVVYVTS------EKFTNDFVN 195 (450)
T ss_pred ccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHH---HHhCCCCeEEEEEH------HHHHHHHHH
Confidence 45654433444444444432 23569999999999999999999983 2222 23556543 233444444
Q ss_pred HhcCCCCCCccHHHHHHHHHHHHhcCCcEEEEEecC---------------------CCC-eEEEeec------------
Q 038454 185 ALKLSLTEDEDKVSRARRLLGKLKAKKKFVLILDDI---------------------DNH-TFCWGLR------------ 230 (359)
Q Consensus 185 ~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv---------------------~~g-~ilvTtr------------ 230 (359)
.+... . ...+.+.+. +.-+|+|||+ ..| .+++||.
T Consensus 196 ~~~~~-----~----~~~~~~~~~--~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~ 264 (450)
T PRK00149 196 ALRNN-----T----MEEFKEKYR--SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEER 264 (450)
T ss_pred HHHcC-----c----HHHHHHHHh--cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHH
Confidence 44321 1 123334444 3448889999 356 7888886
Q ss_pred ---cc-ceeeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHHHHh-------hcCCCChhH
Q 038454 231 ---SM-GCEEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTVVGC-------MRGVDEIHE 299 (359)
Q Consensus 231 ---~~-~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~-------L~~~~~~~~ 299 (359)
+. ....+++++.+.++-..++...+...+. .-.+++...|++.+.|..-.+.-+-.. ....-+...
T Consensus 265 l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~---~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~ 341 (450)
T PRK00149 265 LRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGI---DLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLEL 341 (450)
T ss_pred HHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHH
Confidence 11 1235899999999999999998754322 223567888999999877654332222 122256777
Q ss_pred HHHHHHHH
Q 038454 300 WRNALNEL 307 (359)
Q Consensus 300 w~~~l~~~ 307 (359)
.+.++...
T Consensus 342 ~~~~l~~~ 349 (450)
T PRK00149 342 AKEALKDL 349 (450)
T ss_pred HHHHHHHh
Confidence 77777765
No 75
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.34 E-value=2.8e-05 Score=77.51 Aligned_cols=172 Identities=11% Similarity=0.180 Sum_probs=98.9
Q ss_pred cccccccchHHHHHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHcCcccccCCCc--cEEEEEeCCCcCHHHHHHHH
Q 038454 106 TTTLVGENTKKIVKKVWEDLMGDKVT-KIGVWGMGGFGKTAIMRHINNRPQEETNEFS--DVIWVTVSQPLDLVKLQAEI 182 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~--~~~wv~~~~~~~~~~~~~~i 182 (359)
-..++|.+. .+..|.+++..++.. .+.++|+.|+||||+|+.+++.+. -..... ...+- .+..-.-.+.|
T Consensus 23 f~dliGq~~--~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~-c~~~~~~~~~~~~----~cg~c~~C~~i 95 (598)
T PRK09111 23 FDDLIGQEA--MVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALN-YEGPDGDGGPTID----LCGVGEHCQAI 95 (598)
T ss_pred HHHhcCcHH--HHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhC-cCCccccCCCccc----cCcccHHHHHH
Confidence 457899866 888899988887654 699999999999999999998731 010000 00000 00000111112
Q ss_pred HHHhcCC-----CCCCccHHHHHHHHHHHHhc----CCcEEEEEecC------------------CCC-eEEEee-c---
Q 038454 183 AMALKLS-----LTEDEDKVSRARRLLGKLKA----KKKFVLILDDI------------------DNH-TFCWGL-R--- 230 (359)
Q Consensus 183 ~~~l~~~-----~~~~~~~~~~~~~l~~~l~~----~k~~LlVlDdv------------------~~g-~ilvTt-r--- 230 (359)
...-+.+ .......+ .++.+.+.+.. .++-++|+|++ .++ .+|++| .
T Consensus 96 ~~g~h~Dv~e~~a~s~~gvd-~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~k 174 (598)
T PRK09111 96 MEGRHVDVLEMDAASHTGVD-DIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRK 174 (598)
T ss_pred hcCCCCceEEecccccCCHH-HHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhh
Confidence 1111110 00011111 12222222221 25567899998 234 555544 3
Q ss_pred -----ccceeeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHHH
Q 038454 231 -----SMGCEEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTVV 288 (359)
Q Consensus 231 -----~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~ 288 (359)
...|..+.+.+++.++....+.+.+-..+. .-..+....|++.++|.+.-+....
T Consensus 175 ll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi---~i~~eAl~lIa~~a~Gdlr~al~~L 234 (598)
T PRK09111 175 VPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGV---EVEDEALALIARAAEGSVRDGLSLL 234 (598)
T ss_pred hhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 234677999999999999998887643322 1224667889999999987665443
No 76
>PRK06620 hypothetical protein; Validated
Probab=98.32 E-value=2.5e-05 Score=67.94 Aligned_cols=137 Identities=14% Similarity=0.111 Sum_probs=80.1
Q ss_pred CcccccccchHHHHHHHHHHhcCC--Cc--cEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHH
Q 038454 105 PTTTLVGENTKKIVKKVWEDLMGD--KV--TKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQA 180 (359)
Q Consensus 105 ~~~~~vGr~~~~~~~~l~~~l~~~--~~--~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 180 (359)
...-++|.........+..+-... ++ +.+.|+|++|+|||+|++.+++. . .. .++. ..+..
T Consensus 15 fd~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~-~--~~-----~~~~--~~~~~----- 79 (214)
T PRK06620 15 PDEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNL-S--NA-----YIIK--DIFFN----- 79 (214)
T ss_pred chhhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhc-c--CC-----EEcc--hhhhc-----
Confidence 345566765544555555555421 22 67999999999999999998887 2 11 1211 00000
Q ss_pred HHHHHhcCCCCCCccHHHHHHHHHHHHhcCCcEEEEEecC----------------CCC-eEEEeecc------------
Q 038454 181 EIAMALKLSLTEDEDKVSRARRLLGKLKAKKKFVLILDDI----------------DNH-TFCWGLRS------------ 231 (359)
Q Consensus 181 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv----------------~~g-~ilvTtr~------------ 231 (359)
. +... ..-+|++||+ .+| .+++|++.
T Consensus 80 ----------------~-------~~~~--~~d~lliDdi~~~~~~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~S 134 (214)
T PRK06620 80 ----------------E-------EILE--KYNAFIIEDIENWQEPALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSS 134 (214)
T ss_pred ----------------h-------hHHh--cCCEEEEeccccchHHHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHH
Confidence 0 0111 2346677888 456 78888871
Q ss_pred -cc-eeeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHH
Q 038454 232 -MG-CEEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAI 284 (359)
Q Consensus 232 -~~-~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai 284 (359)
.. +-.+++++++.++-..++.+.+...+. .-.+++..-|++.+.|.--.+
T Consensus 135 Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l---~l~~ev~~~L~~~~~~d~r~l 186 (214)
T PRK06620 135 RIKSVLSILLNSPDDELIKILIFKHFSISSV---TISRQIIDFLLVNLPREYSKI 186 (214)
T ss_pred HHhCCceEeeCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHccCCHHHH
Confidence 11 225788899988888777776542221 122466677777776554444
No 77
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.30 E-value=2.2e-05 Score=77.49 Aligned_cols=156 Identities=17% Similarity=0.247 Sum_probs=92.9
Q ss_pred cccccccchHHHHHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHcCccccc------------------CCCccEEE
Q 038454 106 TTTLVGENTKKIVKKVWEDLMGDKVT-KIGVWGMGGFGKTAIMRHINNRPQEET------------------NEFSDVIW 166 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------~~F~~~~w 166 (359)
-..++|.+. .+..|..++..++.. .+.++|+.|+||||+|+.+++.+.-.. +.|...++
T Consensus 15 f~divGq~~--v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~e 92 (527)
T PRK14969 15 FSELVGQEH--VVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIE 92 (527)
T ss_pred HHHhcCcHH--HHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeE
Confidence 457899866 888888888877654 578999999999999999987731000 01111222
Q ss_pred EEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhcCCcEEEEEecC-----------------C-CC-eEEE
Q 038454 167 VTVSQPLDLVKLQAEIAMALKLSLTEDEDKVSRARRLLGKLKAKKKFVLILDDI-----------------D-NH-TFCW 227 (359)
Q Consensus 167 v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv-----------------~-~g-~ilv 227 (359)
+..+....... .+.++..+.... .. +++-++|+|++ . .. .+|+
T Consensus 93 i~~~~~~~vd~-ir~l~~~~~~~p----------------~~-~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL 154 (527)
T PRK14969 93 VDAASNTQVDA-MRELLDNAQYAP----------------TR-GRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFIL 154 (527)
T ss_pred eeccccCCHHH-HHHHHHHHhhCc----------------cc-CCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEE
Confidence 22221111111 112222111100 11 25678999998 2 23 4554
Q ss_pred ee-c--------ccceeeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHH
Q 038454 228 GL-R--------SMGCEEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAI 284 (359)
Q Consensus 228 Tt-r--------~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai 284 (359)
+| . ...|..+.+.+++.++..+.+.+.+...+. ....+....|++.++|.+--+
T Consensus 155 ~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi---~~~~~al~~la~~s~Gslr~a 217 (527)
T PRK14969 155 ATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENI---PFDATALQLLARAAAGSMRDA 217 (527)
T ss_pred EeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHH
Confidence 44 3 122567899999999999888776533222 123456688999999977533
No 78
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.30 E-value=2.2e-05 Score=78.91 Aligned_cols=178 Identities=16% Similarity=0.172 Sum_probs=103.1
Q ss_pred cccccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHcCcccccCCC---ccEEEEEeCCC---cCHHHHH
Q 038454 106 TTTLVGENTKKIVKKVWEDLMGDKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEF---SDVIWVTVSQP---LDLVKLQ 179 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F---~~~~wv~~~~~---~~~~~~~ 179 (359)
-+.++|++. .+..+...+.......+.|+|++|+||||||+.+++. ......+ ...-|+.+... .+...+.
T Consensus 153 ~~~iiGqs~--~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~-~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~ 229 (615)
T TIGR02903 153 FSEIVGQER--AIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEE-AKKLKHTPFAEDAPFVEVDGTTLRWDPREVT 229 (615)
T ss_pred HHhceeCcH--HHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHh-hhhccCCcccCCCCeEEEechhccCCHHHHh
Confidence 457899977 7777777777666778999999999999999999876 3222222 12345544321 1222221
Q ss_pred HHH---------------HHHhcCCCC-----------------CCccHHHHHHHHHHHHhcCCcEEEEEecC-------
Q 038454 180 AEI---------------AMALKLSLT-----------------EDEDKVSRARRLLGKLKAKKKFVLILDDI------- 220 (359)
Q Consensus 180 ~~i---------------~~~l~~~~~-----------------~~~~~~~~~~~l~~~l~~~k~~LlVlDdv------- 220 (359)
..+ +...+.... -..=....+..+.+.+.. ++++++-|+.
T Consensus 230 ~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~-~~v~~~~~~~~~~~~~~ 308 (615)
T TIGR02903 230 NPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLED-KRVEFSSSYYDPDDPNV 308 (615)
T ss_pred HHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhh-CeEEeecceeccCCccc
Confidence 111 111111000 001112345667777776 7777765533
Q ss_pred -----------CCC-eEEE--eec---------ccceeeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHc
Q 038454 221 -----------DNH-TFCW--GLR---------SMGCEEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEEC 277 (359)
Q Consensus 221 -----------~~g-~ilv--Ttr---------~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c 277 (359)
.+. .+++ ||+ ...+..+.+.+++.++.+.++.+.+...+... ..+..+.|.+.+
T Consensus 309 ~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~l---s~eal~~L~~ys 385 (615)
T TIGR02903 309 PKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHL---AAGVEELIARYT 385 (615)
T ss_pred chhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHCC
Confidence 122 2343 444 12335678999999999999998764322211 245556666666
Q ss_pred CCchhHHHHHHHh
Q 038454 278 AGLQLAIFTVVGC 290 (359)
Q Consensus 278 ~g~Plai~~~~~~ 290 (359)
..-+.++..++..
T Consensus 386 ~~gRraln~L~~~ 398 (615)
T TIGR02903 386 IEGRKAVNILADV 398 (615)
T ss_pred CcHHHHHHHHHHH
Confidence 6557777766554
No 79
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=5.4e-05 Score=75.12 Aligned_cols=163 Identities=13% Similarity=0.139 Sum_probs=91.6
Q ss_pred cccccccchHHHHHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHH
Q 038454 106 TTTLVGENTKKIVKKVWEDLMGDKVT-KIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAM 184 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 184 (359)
-..++|.+. .++.|..++.++++. .+.++|+.|+||||+|+.+++.+.- .+..+ + .+++.=...+.|..
T Consensus 12 f~eivGq~~--i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c-~~~~~---~----~pCg~C~~C~~i~~ 81 (584)
T PRK14952 12 FAEVVGQEH--VTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNC-AQGPT---A----TPCGVCESCVALAP 81 (584)
T ss_pred HHHhcCcHH--HHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcc-ccCCC---C----CcccccHHHHHhhc
Confidence 457899865 888899999887655 4789999999999999999987310 01000 0 00000000111110
Q ss_pred Hhc-------CCCCCCccHHHHHHHHHHHHh----cCCcEEEEEecC-----------------C-CC-eEE-Eeec---
Q 038454 185 ALK-------LSLTEDEDKVSRARRLLGKLK----AKKKFVLILDDI-----------------D-NH-TFC-WGLR--- 230 (359)
Q Consensus 185 ~l~-------~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv-----------------~-~g-~il-vTtr--- 230 (359)
.-+ .+....... +.++.+.+.+. ..++-++|+|++ . .. .+| +||.
T Consensus 82 ~~~~~~dvieidaas~~gv-d~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~k 160 (584)
T PRK14952 82 NGPGSIDVVELDAASHGGV-DDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEK 160 (584)
T ss_pred ccCCCceEEEeccccccCH-HHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHh
Confidence 000 000000011 11112221111 125668899998 2 33 444 4544
Q ss_pred -----ccceeeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchh
Q 038454 231 -----SMGCEEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQL 282 (359)
Q Consensus 231 -----~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pl 282 (359)
...|..+.+.+++.++..+.+.+.+...+. .-..+....|++.++|.+-
T Consensus 161 ll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi---~i~~~al~~Ia~~s~GdlR 214 (584)
T PRK14952 161 VLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGV---VVDDAVYPLVIRAGGGSPR 214 (584)
T ss_pred hHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHH
Confidence 233677999999999999888876643322 1124566778888999774
No 80
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.28 E-value=3.2e-05 Score=79.65 Aligned_cols=150 Identities=13% Similarity=0.148 Sum_probs=91.6
Q ss_pred cccccccchHHHHHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHcCcccccCCC---cc------------------
Q 038454 106 TTTLVGENTKKIVKKVWEDLMGDKVT-KIGVWGMGGFGKTAIMRHINNRPQEETNEF---SD------------------ 163 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F---~~------------------ 163 (359)
-..++|.+. .++.|..++.++++. .+.++|..|+||||+|+.+++.+. -.... .|
T Consensus 14 f~eiiGqe~--v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~-C~~~~~~~pCg~C~sC~~~~~g~~~~~d 90 (824)
T PRK07764 14 FAEVIGQEH--VTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLN-CVEGPTSTPCGECDSCVALAPGGPGSLD 90 (824)
T ss_pred HHHhcCcHH--HHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhC-cccCCCCCCCcccHHHHHHHcCCCCCCc
Confidence 357899865 888898888887664 589999999999999999988741 00110 00
Q ss_pred EEEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHH-----HhcCCcEEEEEecC------------------
Q 038454 164 VIWVTVSQPLDLVKLQAEIAMALKLSLTEDEDKVSRARRLLGK-----LKAKKKFVLILDDI------------------ 220 (359)
Q Consensus 164 ~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-----l~~~k~~LlVlDdv------------------ 220 (359)
+++++......+ + .++.+.+. ..+ +.-++|||++
T Consensus 91 v~eidaas~~~V---------------------d-~iR~l~~~~~~~p~~~-~~KV~IIDEad~lt~~a~NaLLK~LEEp 147 (824)
T PRK07764 91 VTEIDAASHGGV---------------------D-DARELRERAFFAPAES-RYKIFIIDEAHMVTPQGFNALLKIVEEP 147 (824)
T ss_pred EEEecccccCCH---------------------H-HHHHHHHHHHhchhcC-CceEEEEechhhcCHHHHHHHHHHHhCC
Confidence 112211111111 1 11122221 123 5667889998
Q ss_pred CCC-eEEEee-c--------ccceeeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHH
Q 038454 221 DNH-TFCWGL-R--------SMGCEEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAI 284 (359)
Q Consensus 221 ~~g-~ilvTt-r--------~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai 284 (359)
... .+|++| . ...|..|++.+++.++..+.+.+.+-..+. ....+....|++.++|.+..+
T Consensus 148 P~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv---~id~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 148 PEHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGV---PVEPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred CCCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHH
Confidence 233 444444 3 234677999999999998888776533222 122455678899999988444
No 81
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.27 E-value=5.4e-06 Score=78.35 Aligned_cols=148 Identities=15% Similarity=0.227 Sum_probs=84.5
Q ss_pred cccccccchHHHHHHHHHHhc----C---------CCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCC
Q 038454 106 TTTLVGENTKKIVKKVWEDLM----G---------DKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQP 172 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~ 172 (359)
...+.|.+. .++++.+.+. . ..++-+.++|++|+|||++|+.+++. ....| +.+..
T Consensus 121 ~~di~Gl~~--~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~---l~~~~-----~~v~~- 189 (364)
T TIGR01242 121 YEDIGGLEE--QIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE---TNATF-----IRVVG- 189 (364)
T ss_pred HHHhCChHH--HHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh---CCCCE-----Eecch-
Confidence 346788866 5555555442 2 12456999999999999999999998 33333 22211
Q ss_pred cCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhcCCcEEEEEecC--------------------------------
Q 038454 173 LDLVKLQAEIAMALKLSLTEDEDKVSRARRLLGKLKAKKKFVLILDDI-------------------------------- 220 (359)
Q Consensus 173 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv-------------------------------- 220 (359)
..+.... ++ ........+.+......+.+|+||++
T Consensus 190 ---~~l~~~~---~g-------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~ 256 (364)
T TIGR01242 190 ---SELVRKY---IG-------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGF 256 (364)
T ss_pred ---HHHHHHh---hh-------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCC
Confidence 1111100 00 11122222333222235677888876
Q ss_pred --CCC-eEEEeecc----------cc--eeeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCch
Q 038454 221 --DNH-TFCWGLRS----------MG--CEEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQ 281 (359)
Q Consensus 221 --~~g-~ilvTtr~----------~~--~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 281 (359)
..+ .||.||.. .+ ...+.++..+.++..++|...+.......... ...+++.+.|..
T Consensus 257 ~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 257 DPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCC----HHHHHHHcCCCC
Confidence 124 67888761 11 13588999999999999998764433211112 356777776654
No 82
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.27 E-value=2.4e-05 Score=79.93 Aligned_cols=134 Identities=19% Similarity=0.203 Sum_probs=84.5
Q ss_pred ccccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHcCcccccCCC---ccEEEEEeCCCcCHHHHHHHHH
Q 038454 107 TTLVGENTKKIVKKVWEDLMGDKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEF---SDVIWVTVSQPLDLVKLQAEIA 183 (359)
Q Consensus 107 ~~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F---~~~~wv~~~~~~~~~~~~~~i~ 183 (359)
.+++||+. ++.+++..|......-+.++|++|+|||++|+.+++.+......| ++.+|.. +...+ +
T Consensus 186 ~~liGR~~--ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~l----l 254 (758)
T PRK11034 186 DPLIGREK--ELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSL----L 254 (758)
T ss_pred CcCcCCCH--HHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHH----h
Confidence 56999987 999999988876556678999999999999999998732211121 3444421 11111 1
Q ss_pred HHhcCCCCCCccHHHHHHHHHHHHhcCCcEEEEEecC------------------------CCC--eEEEeec-------
Q 038454 184 MALKLSLTEDEDKVSRARRLLGKLKAKKKFVLILDDI------------------------DNH--TFCWGLR------- 230 (359)
Q Consensus 184 ~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv------------------------~~g--~ilvTtr------- 230 (359)
. +.. ...+.+.....+.+.+...++.+|++|++ ..| ++|-+|.
T Consensus 255 a--G~~--~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~vIgATt~~E~~~~ 330 (758)
T PRK11034 255 A--GTK--YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNI 330 (758)
T ss_pred c--ccc--hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEEEecCChHHHHHH
Confidence 0 111 01233344444544444336779999998 344 4555554
Q ss_pred -------ccceeeeecCCCChHHHHHHHHHhh
Q 038454 231 -------SMGCEEVRVPPLSKEEALNLFLDKV 255 (359)
Q Consensus 231 -------~~~~~~~~l~~L~~~ea~~lf~~~~ 255 (359)
....+.+.+++++.+++.+++....
T Consensus 331 ~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 331 FEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred hhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 1122568999999999999988654
No 83
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=3.8e-05 Score=76.19 Aligned_cols=172 Identities=15% Similarity=0.202 Sum_probs=97.4
Q ss_pred cccccccchHHHHHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHH
Q 038454 106 TTTLVGENTKKIVKKVWEDLMGDK-VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAM 184 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 184 (359)
-..++|.+. .+..|...+.+++ ...+.++|+.|+||||+|+.+++.+. -...... ..++.-...+.|..
T Consensus 15 f~dIiGQe~--v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~-C~~~~~~-------~pCg~C~sC~~i~~ 84 (624)
T PRK14959 15 FAEVAGQET--VKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALN-CETAPTG-------EPCNTCEQCRKVTQ 84 (624)
T ss_pred HHHhcCCHH--HHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhcc-ccCCCCC-------CCCcccHHHHHHhc
Confidence 457889865 7777888787765 47788999999999999999998831 1000000 00000011111111
Q ss_pred HhcC-----CCCCCccHHHHHHHHHHHHh----cCCcEEEEEecC------------------CCC-eEEEeec------
Q 038454 185 ALKL-----SLTEDEDKVSRARRLLGKLK----AKKKFVLILDDI------------------DNH-TFCWGLR------ 230 (359)
Q Consensus 185 ~l~~-----~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv------------------~~g-~ilvTtr------ 230 (359)
.... ........ +.++.+.+.+. .+++-++|+|++ ... .+|++|.
T Consensus 85 g~hpDv~eId~a~~~~I-d~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll 163 (624)
T PRK14959 85 GMHVDVVEIDGASNRGI-DDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFP 163 (624)
T ss_pred CCCCceEEEecccccCH-HHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhh
Confidence 1000 00000011 11122222221 126678999998 223 4555444
Q ss_pred ---ccceeeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCch-hHHHHHHHhh
Q 038454 231 ---SMGCEEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQ-LAIFTVVGCM 291 (359)
Q Consensus 231 ---~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P-lai~~~~~~L 291 (359)
...+..+++.+++.++....+...+...+. .-..+.+..|++.++|.+ .|+..+...+
T Consensus 164 ~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi---~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 164 VTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGV---DYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HHHHhhhhccccCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 223567899999999999988886644322 123567788999999965 6666665443
No 84
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.25 E-value=0.00024 Score=70.34 Aligned_cols=157 Identities=14% Similarity=0.188 Sum_probs=95.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAMALKLSLTEDEDKVSRARRLLGKLKAK 210 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 210 (359)
..+.|+|..|+|||.|++.+++........+ .++|++ ..+++..+...+... ....+.+.+.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~-~V~Yit------aeef~~el~~al~~~---------~~~~f~~~y~-- 376 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGT-RVRYVS------SEEFTNEFINSIRDG---------KGDSFRRRYR-- 376 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCC-eEEEee------HHHHHHHHHHHHHhc---------cHHHHHHHhh--
Confidence 4589999999999999999999831111112 355654 344444544443321 1122333443
Q ss_pred CcEEEEEecC---------------------CCC-eEEEeec---------------ccc-eeeeecCCCChHHHHHHHH
Q 038454 211 KKFVLILDDI---------------------DNH-TFCWGLR---------------SMG-CEEVRVPPLSKEEALNLFL 252 (359)
Q Consensus 211 k~~LlVlDdv---------------------~~g-~ilvTtr---------------~~~-~~~~~l~~L~~~ea~~lf~ 252 (359)
.-=+|||||+ ..| .||+||+ ++. .-.+.|.+.+.+.-..++.
T Consensus 377 ~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~ 456 (617)
T PRK14086 377 EMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILR 456 (617)
T ss_pred cCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHH
Confidence 2457889999 456 8999988 111 2357999999999999999
Q ss_pred HhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHHHHhh-------cCCCChhHHHHHHHHHh
Q 038454 253 DKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTVVGCM-------RGVDEIHEWRNALNELR 308 (359)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~L-------~~~~~~~~w~~~l~~~~ 308 (359)
+.+....... -.+++.-|++.+.+..-.+.-+-..| ....+...-+.++..+.
T Consensus 457 kka~~r~l~l---~~eVi~yLa~r~~rnvR~LegaL~rL~a~a~~~~~~itl~la~~vL~~~~ 516 (617)
T PRK14086 457 KKAVQEQLNA---PPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLRDLI 516 (617)
T ss_pred HHHHhcCCCC---CHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhh
Confidence 8875443222 25677778888776654443332222 22245566666666553
No 85
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.25 E-value=8e-05 Score=72.93 Aligned_cols=159 Identities=14% Similarity=0.189 Sum_probs=95.4
Q ss_pred cccccccchHHHHHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHcCcccc-cCC----------------Cc-cEEE
Q 038454 106 TTTLVGENTKKIVKKVWEDLMGDKVT-KIGVWGMGGFGKTAIMRHINNRPQEE-TNE----------------FS-DVIW 166 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~-~~~----------------F~-~~~w 166 (359)
-..++|.+. .++.|...+..+..+ .+.++|+.|+||||+|+.+++.+.-. ... +. .++.
T Consensus 13 fdeiiGqe~--v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~e 90 (535)
T PRK08451 13 FDELIGQES--VSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIE 90 (535)
T ss_pred HHHccCcHH--HHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEE
Confidence 457899865 788888888877665 56899999999999999988763100 000 10 1122
Q ss_pred EEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhcCCcEEEEEecC------------------CCC-eEEE
Q 038454 167 VTVSQPLDLVKLQAEIAMALKLSLTEDEDKVSRARRLLGKLKAKKKFVLILDDI------------------DNH-TFCW 227 (359)
Q Consensus 167 v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv------------------~~g-~ilv 227 (359)
++......+..+ ++++...... -..+ ++-++|+|++ .+. .+|+
T Consensus 91 ldaas~~gId~I-Relie~~~~~----------------P~~~-~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL 152 (535)
T PRK08451 91 MDAASNRGIDDI-RELIEQTKYK----------------PSMA-RFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFIL 152 (535)
T ss_pred eccccccCHHHH-HHHHHHHhhC----------------cccC-CeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEE
Confidence 221111112111 1111111100 0012 5668889998 233 5555
Q ss_pred eec---------ccceeeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHH
Q 038454 228 GLR---------SMGCEEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTV 287 (359)
Q Consensus 228 Ttr---------~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 287 (359)
+|. ...|..+++.+++.++....+...+...+. .-..+.+..|++.++|.+--+..+
T Consensus 153 ~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi---~i~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 153 ATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGV---SYEPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred EECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCcHHHHHHH
Confidence 554 234567999999999999988876643322 123567788999999988555444
No 86
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.22 E-value=2.3e-05 Score=78.57 Aligned_cols=169 Identities=15% Similarity=0.213 Sum_probs=97.0
Q ss_pred cccccccchHHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHH
Q 038454 106 TTTLVGENTKKIVKKVWEDLMGDKV-TKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAM 184 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 184 (359)
-..++|.+. .++.|..++..+.+ ..+.++|+.|+||||+|+.+++.+. ...... -...++.-..++.+..
T Consensus 15 ~~eiiGq~~--~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~-c~~~~~------~~~~c~~c~~c~~i~~ 85 (585)
T PRK14950 15 FAELVGQEH--VVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVN-CTTNDP------KGRPCGTCEMCRAIAE 85 (585)
T ss_pred HHHhcCCHH--HHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhc-CCCCCC------CCCCCccCHHHHHHhc
Confidence 467899866 88888888877655 4578999999999999999988731 000000 0001111122233322
Q ss_pred HhcCC-----CCCCccHHHHHHHHHHHHhc----CCcEEEEEecC------------------CCC-eEEEeec------
Q 038454 185 ALKLS-----LTEDEDKVSRARRLLGKLKA----KKKFVLILDDI------------------DNH-TFCWGLR------ 230 (359)
Q Consensus 185 ~l~~~-----~~~~~~~~~~~~~l~~~l~~----~k~~LlVlDdv------------------~~g-~ilvTtr------ 230 (359)
..+.+ .......+. ++.+.+.+.. .++-++|+|++ ... .+|+++.
T Consensus 86 ~~~~d~~~i~~~~~~~vd~-ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll 164 (585)
T PRK14950 86 GSAVDVIEMDAASHTSVDD-AREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVP 164 (585)
T ss_pred CCCCeEEEEeccccCCHHH-HHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhh
Confidence 21110 000111111 2222222211 25668899998 233 4444443
Q ss_pred ---ccceeeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHH
Q 038454 231 ---SMGCEEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTV 287 (359)
Q Consensus 231 ---~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 287 (359)
...+..+.+.+++.++....+...+...+.. -..+.+..|++.++|.+..+...
T Consensus 165 ~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~---i~~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 165 ATILSRCQRFDFHRHSVADMAAHLRKIAAAEGIN---LEPGALEAIARAATGSMRDAENL 221 (585)
T ss_pred HHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 2234568899999999988888776443321 22467788999999988655443
No 87
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.21 E-value=6.4e-06 Score=78.26 Aligned_cols=69 Identities=19% Similarity=0.167 Sum_probs=53.6
Q ss_pred ccccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHH
Q 038454 107 TTLVGENTKKIVKKVWEDLMGDKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQA 180 (359)
Q Consensus 107 ~~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 180 (359)
..+++.+. ..+.++..+... +.|.++|++|+|||++|+.+++. ......|+.+.||.++...+..+++.
T Consensus 175 ~d~~i~e~--~le~l~~~L~~~--~~iil~GppGtGKT~lA~~la~~-l~~~~~~~~v~~VtFHpsySYeDFI~ 243 (459)
T PRK11331 175 NDLFIPET--TIETILKRLTIK--KNIILQGPPGVGKTFVARRLAYL-LTGEKAPQRVNMVQFHQSYSYEDFIQ 243 (459)
T ss_pred hcccCCHH--HHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHH-hcCCcccceeeEEeecccccHHHHhc
Confidence 34566644 788888888765 56888999999999999999988 33345677888999998888777654
No 88
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.20 E-value=3.4e-05 Score=73.47 Aligned_cols=45 Identities=18% Similarity=0.327 Sum_probs=33.6
Q ss_pred ccccccchHHHHHHHHHHh----cC---------CCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 107 TTLVGENTKKIVKKVWEDL----MG---------DKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 107 ~~~vGr~~~~~~~~l~~~l----~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..+.|.+. .++++.+.+ .. ..++-|.++|++|+|||++|+.+++.
T Consensus 131 ~di~Gl~~--~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~ 188 (389)
T PRK03992 131 EDIGGLEE--QIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE 188 (389)
T ss_pred HHhCCcHH--HHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH
Confidence 46788876 555555443 11 24567999999999999999999987
No 89
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.19 E-value=8.5e-05 Score=68.77 Aligned_cols=47 Identities=11% Similarity=0.036 Sum_probs=38.7
Q ss_pred CcccccccchHHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 105 PTTTLVGENTKKIVKKVWEDLMGDKV-TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 105 ~~~~~vGr~~~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.-..++|.+. ..+.+..++..+.. .++.++|++|+|||++|+.+++.
T Consensus 19 ~~~~~~~~~~--~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~ 66 (316)
T PHA02544 19 TIDECILPAA--DKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNE 66 (316)
T ss_pred cHHHhcCcHH--HHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHH
Confidence 3467899966 78888888877654 56666999999999999999987
No 90
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.18 E-value=7.7e-05 Score=72.23 Aligned_cols=154 Identities=13% Similarity=0.229 Sum_probs=91.8
Q ss_pred cccccccchHHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHcCccccc--------------------CCCccE
Q 038454 106 TTTLVGENTKKIVKKVWEDLMGDKV-TKIGVWGMGGFGKTAIMRHINNRPQEET--------------------NEFSDV 164 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~~F~~~ 164 (359)
-..++|.+. .+..|..++..+.. ..+.++|+.|+||||+|+.+++.+.-.. .+++ .
T Consensus 16 ~~diiGq~~--~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d-~ 92 (451)
T PRK06305 16 FSEILGQDA--VVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD-V 92 (451)
T ss_pred HHHhcCcHH--HHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-e
Confidence 467899866 88888888887765 5688999999999999999988631100 0111 1
Q ss_pred EEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhcCCcEEEEEecC------------------CCC-eE
Q 038454 165 IWVTVSQPLDLVKLQAEIAMALKLSLTEDEDKVSRARRLLGKLKAKKKFVLILDDI------------------DNH-TF 225 (359)
Q Consensus 165 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv------------------~~g-~i 225 (359)
+++.........++ +.+...+.. ....+ .+-++|+|++ ... .+
T Consensus 93 ~~i~g~~~~gid~i-r~i~~~l~~----------------~~~~~-~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~ 154 (451)
T PRK06305 93 LEIDGASHRGIEDI-RQINETVLF----------------TPSKS-RYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKF 154 (451)
T ss_pred EEeeccccCCHHHH-HHHHHHHHh----------------hhhcC-CCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceE
Confidence 11111111111111 111111110 00113 5667889987 223 55
Q ss_pred EEeec---------ccceeeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhH
Q 038454 226 CWGLR---------SMGCEEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLA 283 (359)
Q Consensus 226 lvTtr---------~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pla 283 (359)
|++|. ...+..+++.+++.++....+...+-..+. .-..+.+..|++.++|.+--
T Consensus 155 Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~---~i~~~al~~L~~~s~gdlr~ 218 (451)
T PRK06305 155 FLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGI---ETSREALLPIARAAQGSLRD 218 (451)
T ss_pred EEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHH
Confidence 55553 223567999999999999888876533221 12346778899999997643
No 91
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.18 E-value=7.1e-05 Score=68.66 Aligned_cols=175 Identities=14% Similarity=0.187 Sum_probs=111.4
Q ss_pred cccccccchHHHHHHHHHHhcCCC---ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHH
Q 038454 106 TTTLVGENTKKIVKKVWEDLMGDK---VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEI 182 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l~~~~---~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 182 (359)
.+.+.+|+. ++..+...+.++. +..|.|+|.+|.|||.+.+++.+. . .. ..+|+++-+.++...++..|
T Consensus 5 ~~~v~~Re~--qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~-~--n~---~~vw~n~~ecft~~~lle~I 76 (438)
T KOG2543|consen 5 EPNVPCRES--QIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRK-L--NL---ENVWLNCVECFTYAILLEKI 76 (438)
T ss_pred ccCccchHH--HHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhh-c--CC---cceeeehHHhccHHHHHHHH
Confidence 467788866 8888888887653 345689999999999999999998 2 11 36899999999999999999
Q ss_pred HHHhcC-CCCCC------ccHHHHHHHHHH--HHhc-CCcEEEEEecC---------------------C-CCeEEEeec
Q 038454 183 AMALKL-SLTED------EDKVSRARRLLG--KLKA-KKKFVLILDDI---------------------D-NHTFCWGLR 230 (359)
Q Consensus 183 ~~~l~~-~~~~~------~~~~~~~~~l~~--~l~~-~k~~LlVlDdv---------------------~-~g~ilvTtr 230 (359)
+.+.+. +.+.. .+.......+.+ .... ++.++|||||+ . +.-.|+++-
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~ 156 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSA 156 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEec
Confidence 999963 22211 111222233333 1112 25899999999 2 224444444
Q ss_pred ---------ccce---eeeecCCCChHHHHHHHHHhhcCCCCC---CCCchHHHHHHHHHHcCCchhHHHHHHHh
Q 038454 231 ---------SMGC---EEVRVPPLSKEEALNLFLDKVGRNILH---VPTLNEEIINSVVEECAGLQLAIFTVVGC 290 (359)
Q Consensus 231 ---------~~~~---~~~~l~~L~~~ea~~lf~~~~~~~~~~---~~~~~~~~~~~i~~~c~g~Plai~~~~~~ 290 (359)
++++ -++.++.-+.+|..+++.+.-.+ ... ...-+.-+..-....|+ -+-.+..+++.
T Consensus 157 ~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~p~-~r~~~~ya~fl~v~l~vF~~~cr-d~~eL~~~~~~ 229 (438)
T KOG2543|consen 157 PSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRDNPG-KRKLDVYAQFLHVLLQVFYMACR-DVNELRSLISL 229 (438)
T ss_pred cccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcCCcc-ccchHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHH
Confidence 2444 34788889999999988765211 110 01112223344556676 55555555544
No 92
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.18 E-value=9.3e-05 Score=74.59 Aligned_cols=163 Identities=15% Similarity=0.208 Sum_probs=91.8
Q ss_pred cccccccchHHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHcCcccccCCC---ccEEE-EEeCCCcCHHHHHH
Q 038454 106 TTTLVGENTKKIVKKVWEDLMGDKV-TKIGVWGMGGFGKTAIMRHINNRPQEETNEF---SDVIW-VTVSQPLDLVKLQA 180 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F---~~~~w-v~~~~~~~~~~~~~ 180 (359)
-..++|.+. .+..|..++..+++ ..+.++|+.|+||||+|+.+++.+.-..... .|..- -+.+..++.
T Consensus 17 f~dIiGQe~--~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dv----- 89 (725)
T PRK07133 17 FDDIVGQDH--IVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDI----- 89 (725)
T ss_pred HHHhcCcHH--HHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcE-----
Confidence 457899865 78888888887654 5678999999999999999987731000000 00000 000000000
Q ss_pred HHHHHhcCCCCCCccHHHHHHHHHHHHhc----CCcEEEEEecC-----------------CCC--e-EEEeec------
Q 038454 181 EIAMALKLSLTEDEDKVSRARRLLGKLKA----KKKFVLILDDI-----------------DNH--T-FCWGLR------ 230 (359)
Q Consensus 181 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~----~k~~LlVlDdv-----------------~~g--~-ilvTtr------ 230 (359)
+......... .+.++.+.+.+.. +++-++|+|++ .++ . |++|+.
T Consensus 90 -----ieidaasn~~-vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~ 163 (725)
T PRK07133 90 -----IEMDAASNNG-VDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPL 163 (725)
T ss_pred -----EEEeccccCC-HHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhH
Confidence 0000000001 1112223222221 26668899998 233 3 344544
Q ss_pred --ccceeeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHH
Q 038454 231 --SMGCEEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAI 284 (359)
Q Consensus 231 --~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai 284 (359)
...|..+.+.+++.++....+...+-..+. ....+.+..|++.++|.+--+
T Consensus 164 TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI---~id~eAl~~LA~lS~GslR~A 216 (725)
T PRK07133 164 TILSRVQRFNFRRISEDEIVSRLEFILEKENI---SYEKNALKLIAKLSSGSLRDA 216 (725)
T ss_pred HHHhhceeEEccCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHH
Confidence 234678999999999999888876533222 112456778999998876533
No 93
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.18 E-value=9.9e-05 Score=74.05 Aligned_cols=155 Identities=13% Similarity=0.208 Sum_probs=93.4
Q ss_pred cccccccchHHHHHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHcCcc--c------------------ccCCCccE
Q 038454 106 TTTLVGENTKKIVKKVWEDLMGDKVT-KIGVWGMGGFGKTAIMRHINNRPQ--E------------------ETNEFSDV 164 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~--~------------------~~~~F~~~ 164 (359)
-..++|.+. .+..|..++..+... .+.++|+.|+||||+|+.++..+. . ...+|+ +
T Consensus 16 f~~viGq~~--~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n-~ 92 (614)
T PRK14971 16 FESVVGQEA--LTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN-I 92 (614)
T ss_pred HHHhcCcHH--HHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc-e
Confidence 457899865 888899999887654 588999999999999999887631 0 011232 2
Q ss_pred EEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhcCCcEEEEEecC------------------CCC-eE
Q 038454 165 IWVTVSQPLDLVKLQAEIAMALKLSLTEDEDKVSRARRLLGKLKAKKKFVLILDDI------------------DNH-TF 225 (359)
Q Consensus 165 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv------------------~~g-~i 225 (359)
..++........++ +.++.++.... ..+ ++-++|+|++ ..+ .+
T Consensus 93 ~~ld~~~~~~vd~I-r~li~~~~~~P----------------~~~-~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tif 154 (614)
T PRK14971 93 HELDAASNNSVDDI-RNLIEQVRIPP----------------QIG-KYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIF 154 (614)
T ss_pred EEecccccCCHHHH-HHHHHHHhhCc----------------ccC-CcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEE
Confidence 22222222122221 12222221110 112 4557788888 233 44
Q ss_pred EE-eec--------ccceeeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHH
Q 038454 226 CW-GLR--------SMGCEEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAI 284 (359)
Q Consensus 226 lv-Ttr--------~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai 284 (359)
|+ |+. ...|..+++.+++.++....+.+.+...+. .-..+.+..|+..++|..--+
T Consensus 155 IL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi---~i~~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 155 ILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGI---TAEPEALNVIAQKADGGMRDA 219 (614)
T ss_pred EEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHH
Confidence 44 444 234567999999999999988876643322 112456788899999866544
No 94
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=9.7e-05 Score=73.86 Aligned_cols=170 Identities=14% Similarity=0.232 Sum_probs=92.4
Q ss_pred cccccccchHHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEE-eCCCcCHHHHHHHHH
Q 038454 106 TTTLVGENTKKIVKKVWEDLMGDKV-TKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVT-VSQPLDLVKLQAEIA 183 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~-~~~~~~~~~~~~~i~ 183 (359)
-..++|.+. .+..|..++.++.+ ..+.++|+.|+||||+|+.+++.+. -...++.-.|.. +...++.-...+.+.
T Consensus 15 f~eivGQe~--i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~-c~~~~~~~~~~~~~~~~Cg~C~sC~~~~ 91 (620)
T PRK14954 15 FADITAQEH--ITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVN-CQRMIDDPVYLQEVTEPCGECESCRDFD 91 (620)
T ss_pred HHHhcCcHH--HHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhC-CCCcCCccccccccCCCCccCHHHHHHh
Confidence 457899865 88888888887765 4588999999999999999988731 111110000110 000000001111111
Q ss_pred HHhcC-----CCCCCccHHHHHHHHHHHH-----hcCCcEEEEEecC-----------------CCC--eEEE-eec---
Q 038454 184 MALKL-----SLTEDEDKVSRARRLLGKL-----KAKKKFVLILDDI-----------------DNH--TFCW-GLR--- 230 (359)
Q Consensus 184 ~~l~~-----~~~~~~~~~~~~~~l~~~l-----~~~k~~LlVlDdv-----------------~~g--~ilv-Ttr--- 230 (359)
..-.. ........++ ++.+.+.+ .+ .+-++|+|++ .++ .+|+ |++
T Consensus 92 ~g~~~n~~~~d~~s~~~vd~-Ir~l~e~~~~~P~~~-~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~k 169 (620)
T PRK14954 92 AGTSLNISEFDAASNNSVDD-IRQLRENVRYGPQKG-RYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHK 169 (620)
T ss_pred ccCCCCeEEecccccCCHHH-HHHHHHHHHhhhhcC-CCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhh
Confidence 10000 0000011111 22222222 23 5557899988 223 4444 444
Q ss_pred -----ccceeeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhH
Q 038454 231 -----SMGCEEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLA 283 (359)
Q Consensus 231 -----~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pla 283 (359)
...+..+++.+++.++....+.+.+-..+. .-..+.+..|++.++|..--
T Consensus 170 Ll~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi---~I~~eal~~La~~s~Gdlr~ 224 (620)
T PRK14954 170 IPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGI---QIDADALQLIARKAQGSMRD 224 (620)
T ss_pred hhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHhCCCHHH
Confidence 234567999999999988888776533221 12356778899999996553
No 95
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.16 E-value=0.00016 Score=70.61 Aligned_cols=156 Identities=16% Similarity=0.216 Sum_probs=93.2
Q ss_pred cccccccchHHHHHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHcCccc--ccC----------------CCccEEE
Q 038454 106 TTTLVGENTKKIVKKVWEDLMGDKVT-KIGVWGMGGFGKTAIMRHINNRPQE--ETN----------------EFSDVIW 166 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~--~~~----------------~F~~~~w 166 (359)
-..++|.+. .+..|..++..+.+. .+.++|+.|+||||+|+.++..+.- ... .|...++
T Consensus 15 f~diiGq~~--i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~e 92 (486)
T PRK14953 15 FKEVIGQEI--VVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIE 92 (486)
T ss_pred HHHccChHH--HHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEE
Confidence 357889866 888888888876554 5678999999999999999876310 000 0111222
Q ss_pred EEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHh----cCCcEEEEEecC-----------------C-CC-
Q 038454 167 VTVSQPLDLVKLQAEIAMALKLSLTEDEDKVSRARRLLGKLK----AKKKFVLILDDI-----------------D-NH- 223 (359)
Q Consensus 167 v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv-----------------~-~g- 223 (359)
+..+..... +..+.+.+... .+++-++|+|++ . +.
T Consensus 93 idaas~~gv----------------------d~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~ 150 (486)
T PRK14953 93 IDAASNRGI----------------------DDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRT 150 (486)
T ss_pred EeCccCCCH----------------------HHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCe
Confidence 221111111 11112222221 125668899998 2 23
Q ss_pred eEEE-eec--------ccceeeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHHH
Q 038454 224 TFCW-GLR--------SMGCEEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTVV 288 (359)
Q Consensus 224 ~ilv-Ttr--------~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~ 288 (359)
.+|+ |++ ...+..+.+.+++.++....+...+-..+. ....+.+..|++.++|.+..+....
T Consensus 151 v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi---~id~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 151 IFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKI---EYEEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred EEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4444 444 223567899999999999888876543322 1234667788899999776554443
No 96
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.15 E-value=0.00073 Score=65.34 Aligned_cols=154 Identities=14% Similarity=0.210 Sum_probs=91.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAMALKLSLTEDEDKVSRARRLLGKLKAK 210 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 210 (359)
..+.|+|++|+|||+|++.+++.+. .....+++++ ...+...+...+... . ...+.+.+.
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~---~~~~~v~yi~------~~~f~~~~~~~l~~~-----~----~~~f~~~~~-- 201 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALR---ESGGKILYVR------SELFTEHLVSAIRSG-----E----MQRFRQFYR-- 201 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHH---HcCCCEEEee------HHHHHHHHHHHHhcc-----h----HHHHHHHcc--
Confidence 5689999999999999999999831 1122355654 234444555444321 1 122333333
Q ss_pred CcEEEEEecC---------------------CCC-eEEEeec---------------ccc-eeeeecCCCChHHHHHHHH
Q 038454 211 KKFVLILDDI---------------------DNH-TFCWGLR---------------SMG-CEEVRVPPLSKEEALNLFL 252 (359)
Q Consensus 211 k~~LlVlDdv---------------------~~g-~ilvTtr---------------~~~-~~~~~l~~L~~~ea~~lf~ 252 (359)
..-+|++||+ ..| .||+||. +.. .-.+.+.+++.++-..++.
T Consensus 202 ~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~ 281 (445)
T PRK12422 202 NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLE 281 (445)
T ss_pred cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHH
Confidence 3458888998 357 8888886 111 2457899999999999998
Q ss_pred HhhcCCCCCCCCchHHHHHHHHHHcCCch-hHHHHHHHh--------hc-CCCChhHHHHHHHHH
Q 038454 253 DKVGRNILHVPTLNEEIINSVVEECAGLQ-LAIFTVVGC--------MR-GVDEIHEWRNALNEL 307 (359)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~i~~~c~g~P-lai~~~~~~--------L~-~~~~~~~w~~~l~~~ 307 (359)
+.+-..+... ..++..-|+..+.|.- -....+-.+ +. ..-+.+.-+.++...
T Consensus 282 ~k~~~~~~~l---~~evl~~la~~~~~dir~L~g~l~~l~~~~a~~~~~~~~i~~~~~~~~l~~~ 343 (445)
T PRK12422 282 RKAEALSIRI---EETALDFLIEALSSNVKSLLHALTLLAKRVAYKKLSHQLLYVDDIKALLHDV 343 (445)
T ss_pred HHHHHcCCCC---CHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 8874432212 2456666777766543 222222222 11 225566666666654
No 97
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.15 E-value=0.00042 Score=60.49 Aligned_cols=158 Identities=19% Similarity=0.233 Sum_probs=103.6
Q ss_pred cCCCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeC-CCcCHHHHHHHHHHHhcCCCCCCccHH----HHH
Q 038454 126 MGDKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVS-QPLDLVKLQAEIAMALKLSLTEDEDKV----SRA 200 (359)
Q Consensus 126 ~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~~~~~~~~----~~~ 200 (359)
..++.+++.|+|.-|+|||.+.+.+...+. + +.++-+.+. ...+...+...+...+..+. ..... ...
T Consensus 47 i~d~qg~~~vtGevGsGKTv~~Ral~~s~~---~--d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p--~~~~~~~~e~~~ 119 (269)
T COG3267 47 IADGQGILAVTGEVGSGKTVLRRALLASLN---E--DQVAVVVIDKPTLSDATLLEAIVADLESQP--KVNVNAVLEQID 119 (269)
T ss_pred HhcCCceEEEEecCCCchhHHHHHHHHhcC---C--CceEEEEecCcchhHHHHHHHHHHHhccCc--cchhHHHHHHHH
Confidence 345567999999999999999996555421 1 112223333 34577888888888888732 22333 333
Q ss_pred HHHHHHHhcCCc-EEEEEecC--------------------CCC--eEEEeec---------------ccceee-eecCC
Q 038454 201 RRLLGKLKAKKK-FVLILDDI--------------------DNH--TFCWGLR---------------SMGCEE-VRVPP 241 (359)
Q Consensus 201 ~~l~~~l~~~k~-~LlVlDdv--------------------~~g--~ilvTtr---------------~~~~~~-~~l~~ 241 (359)
+.+....+.+++ ..+++|+. ..+ +|+.-.. ...+.. |.++|
T Consensus 120 ~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P 199 (269)
T COG3267 120 RELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPP 199 (269)
T ss_pred HHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCC
Confidence 444444444566 99999998 222 3444333 112334 89999
Q ss_pred CChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHHHHh
Q 038454 242 LSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTVVGC 290 (359)
Q Consensus 242 L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~ 290 (359)
++.++...++.....+.....+--..+....|.....|.|.+|..++..
T Consensus 200 ~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 200 LTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred cChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHHH
Confidence 9999999988888755543333344667788999999999999877643
No 98
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.11 E-value=7.2e-05 Score=78.22 Aligned_cols=134 Identities=14% Similarity=0.193 Sum_probs=82.0
Q ss_pred ccccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHcCccccc--CC-CccEEEEEeCCCcCHHHHHHHHH
Q 038454 107 TTLVGENTKKIVKKVWEDLMGDKVTKIGVWGMGGFGKTAIMRHINNRPQEET--NE-FSDVIWVTVSQPLDLVKLQAEIA 183 (359)
Q Consensus 107 ~~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~~-F~~~~wv~~~~~~~~~~~~~~i~ 183 (359)
.+++||+. ++.+++..|.......+.++|++|+|||++|..+++++.... .. ....+|.- ++..+.
T Consensus 173 ~~~igr~~--ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l-----~~~~l~---- 241 (852)
T TIGR03346 173 DPVIGRDE--EIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL-----DMGALI---- 241 (852)
T ss_pred CcCCCcHH--HHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe-----eHHHHh----
Confidence 56999976 999999999887667788999999999999999998831110 00 12223321 111111
Q ss_pred HHhcCCCCCCccHHHHHHHHHHHHhc-CCcEEEEEecC-----------------------CCC--eEEEeec-------
Q 038454 184 MALKLSLTEDEDKVSRARRLLGKLKA-KKKFVLILDDI-----------------------DNH--TFCWGLR------- 230 (359)
Q Consensus 184 ~~l~~~~~~~~~~~~~~~~l~~~l~~-~k~~LlVlDdv-----------------------~~g--~ilvTtr------- 230 (359)
. +.. ...+.+..+..+.+.+.. +++.+|++|++ ..| .+|.+|.
T Consensus 242 a--~~~--~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~i~~IgaTt~~e~r~~ 317 (852)
T TIGR03346 242 A--GAK--YRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGATTLDEYRKY 317 (852)
T ss_pred h--cch--hhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcCceEEEEeCcHHHHHHH
Confidence 0 000 012233344444444432 36899999999 124 4444444
Q ss_pred -------ccceeeeecCCCChHHHHHHHHHhh
Q 038454 231 -------SMGCEEVRVPPLSKEEALNLFLDKV 255 (359)
Q Consensus 231 -------~~~~~~~~l~~L~~~ea~~lf~~~~ 255 (359)
......+.++..+.++...++....
T Consensus 318 ~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 318 IEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred hhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 1122458899999999999887653
No 99
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.10 E-value=0.00022 Score=67.17 Aligned_cols=172 Identities=16% Similarity=0.224 Sum_probs=108.7
Q ss_pred CCcccccccchHHHHHHHHHHhcC----CCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHH
Q 038454 104 LPTTTLVGENTKKIVKKVWEDLMG----DKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQ 179 (359)
Q Consensus 104 ~~~~~~vGr~~~~~~~~l~~~l~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 179 (359)
.++..++||+. ++..+.+|+.. +..+.+-|.|.+|.|||.+...++.++...... .++++++...-.....++
T Consensus 147 ~~p~~l~gRe~--e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~-~~~v~inc~sl~~~~aiF 223 (529)
T KOG2227|consen 147 APPGTLKGREL--EMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKS-PVTVYINCTSLTEASAIF 223 (529)
T ss_pred CCCCCccchHH--HHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhccc-ceeEEEeeccccchHHHH
Confidence 35678999976 77777777754 467789999999999999999999984222122 245777766555677777
Q ss_pred HHHHHHhcCCCCCCccHHHHHHHHHHHHhcCC-cEEEEEecC-------------------CCC-eEEEee---------
Q 038454 180 AEIAMALKLSLTEDEDKVSRARRLLGKLKAKK-KFVLILDDI-------------------DNH-TFCWGL--------- 229 (359)
Q Consensus 180 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k-~~LlVlDdv-------------------~~g-~ilvTt--------- 229 (359)
..|...+-..........+....+.+...+.+ -+|+|+|.. -++ ++++.-
T Consensus 224 ~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTd 303 (529)
T KOG2227|consen 224 KKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTD 303 (529)
T ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHH
Confidence 77777662222222233566677777776634 689999998 222 222221
Q ss_pred c-----c--cce--eeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCc
Q 038454 230 R-----S--MGC--EEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGL 280 (359)
Q Consensus 230 r-----~--~~~--~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~ 280 (359)
| . .++ ..+..+|-+.++-.++|....-.... .......++-++++|.|.
T Consensus 304 R~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t--~~~~~~Aie~~ArKvaa~ 361 (529)
T KOG2227|consen 304 RFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEEST--SIFLNAAIELCARKVAAP 361 (529)
T ss_pred HHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccc--cccchHHHHHHHHHhccC
Confidence 1 1 122 34788999999999999988643321 222223344444454443
No 100
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.10 E-value=0.00021 Score=70.90 Aligned_cols=165 Identities=15% Similarity=0.202 Sum_probs=94.4
Q ss_pred cccccccchHHHHHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHcCcccc--cCCCccEEEEEeCCCcCHHHHHHHH
Q 038454 106 TTTLVGENTKKIVKKVWEDLMGDKVT-KIGVWGMGGFGKTAIMRHINNRPQEE--TNEFSDVIWVTVSQPLDLVKLQAEI 182 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~--~~~F~~~~wv~~~~~~~~~~~~~~i 182 (359)
-..++|.+. .+..|..++.++..+ .+.++|+.|+||||+|+.+++.+.-. ...+.| +...+. +.|
T Consensus 15 f~diiGqe~--iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC------~~C~~C----~~i 82 (563)
T PRK06647 15 FNSLEGQDF--VVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPC------GECSSC----KSI 82 (563)
T ss_pred HHHccCcHH--HHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCC------ccchHH----HHH
Confidence 457899866 888899999877654 68899999999999999999873110 000111 000000 111
Q ss_pred HHHhcC-----CCCCCccHHHHHHHHHHH-----HhcCCcEEEEEecC------------------CCC-eEEEeec---
Q 038454 183 AMALKL-----SLTEDEDKVSRARRLLGK-----LKAKKKFVLILDDI------------------DNH-TFCWGLR--- 230 (359)
Q Consensus 183 ~~~l~~-----~~~~~~~~~~~~~~l~~~-----l~~~k~~LlVlDdv------------------~~g-~ilvTtr--- 230 (359)
...-.. ........++ ++.+.+. ..+ ++-++|+|++ .+. .+|++|.
T Consensus 83 ~~~~~~dv~~idgas~~~vdd-Ir~l~e~~~~~p~~~-~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~ 160 (563)
T PRK06647 83 DNDNSLDVIEIDGASNTSVQD-VRQIKEEIMFPPASS-RYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVH 160 (563)
T ss_pred HcCCCCCeEEecCcccCCHHH-HHHHHHHHHhchhcC-CCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChH
Confidence 000000 0000011111 1122211 123 6668889998 233 4444443
Q ss_pred ------ccceeeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHH
Q 038454 231 ------SMGCEEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTV 287 (359)
Q Consensus 231 ------~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 287 (359)
...+..+.+.+++.++..+.+...+...+. .-..+.+..|++.++|.+-.+..+
T Consensus 161 kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi---~id~eAl~lLa~~s~GdlR~alsl 220 (563)
T PRK06647 161 KLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQI---KYEDEALKWIAYKSTGSVRDAYTL 220 (563)
T ss_pred HhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 233567899999999998888877643322 123567778999999987544433
No 101
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.09 E-value=4e-05 Score=68.31 Aligned_cols=159 Identities=13% Similarity=0.159 Sum_probs=96.3
Q ss_pred cccccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEE-EEEeCCCcCHHHHHHHHHH
Q 038454 106 TTTLVGENTKKIVKKVWEDLMGDKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVI-WVTVSQPLDLVKLQAEIAM 184 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~-wv~~~~~~~~~~~~~~i~~ 184 (359)
...++|.+. .+..|.+.+.....+....+|++|.|||+-|..++..+ --.+.|.+.+ =.++|......-+-..+
T Consensus 35 ~de~~gQe~--vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L-~~~~~~~~rvl~lnaSderGisvvr~Ki-- 109 (346)
T KOG0989|consen 35 FDELAGQEH--VVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARAL-NCEQLFPCRVLELNASDERGISVVREKI-- 109 (346)
T ss_pred HHhhcchHH--HHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHh-cCccccccchhhhcccccccccchhhhh--
Confidence 457888865 78888888888788999999999999999999998873 2235566533 34444432222000000
Q ss_pred HhcCCCCCCccHHHHHHHHHHHHhc-CCc-EEEEEecC------------------CCC-e-EEEeec--------ccce
Q 038454 185 ALKLSLTEDEDKVSRARRLLGKLKA-KKK-FVLILDDI------------------DNH-T-FCWGLR--------SMGC 234 (359)
Q Consensus 185 ~l~~~~~~~~~~~~~~~~l~~~l~~-~k~-~LlVlDdv------------------~~g-~-ilvTtr--------~~~~ 234 (359)
.+.............. -++ -++|||++ ... + |+||+- ...|
T Consensus 110 ---------k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC 180 (346)
T KOG0989|consen 110 ---------KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRC 180 (346)
T ss_pred ---------cCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhH
Confidence 0000000000000000 022 46778888 222 3 445543 3456
Q ss_pred eeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCch
Q 038454 235 EEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQ 281 (359)
Q Consensus 235 ~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 281 (359)
..+..++|..++..+-+...+-..+. +-..+..+.|++.++|--
T Consensus 181 ~KfrFk~L~d~~iv~rL~~Ia~~E~v---~~d~~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 181 QKFRFKKLKDEDIVDRLEKIASKEGV---DIDDDALKLIAKISDGDL 224 (346)
T ss_pred HHhcCCCcchHHHHHHHHHHHHHhCC---CCCHHHHHHHHHHcCCcH
Confidence 77999999999999988888755443 223566788999998853
No 102
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.05 E-value=0.00031 Score=64.74 Aligned_cols=173 Identities=13% Similarity=0.147 Sum_probs=98.9
Q ss_pred ccccccchHHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHcCcccc------------cCCCccEEEEEeCCCc
Q 038454 107 TTLVGENTKKIVKKVWEDLMGDKV-TKIGVWGMGGFGKTAIMRHINNRPQEE------------TNEFSDVIWVTVSQPL 173 (359)
Q Consensus 107 ~~~vGr~~~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~------------~~~F~~~~wv~~~~~~ 173 (359)
..++|.+. .+..+...+..+++ +...++|+.|+||+++|..+++.+.-. ...++-..|+.-....
T Consensus 4 ~~iiGq~~--~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~ 81 (314)
T PRK07399 4 ANLIGQPL--AIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQH 81 (314)
T ss_pred HHhCCHHH--HHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccc
Confidence 45788865 88888888888764 799999999999999999988763110 1112223444321000
Q ss_pred CHHHHHHHHHHHhcC--CCCCCccHHHHHHHHHHHHhc----CCcEEEEEecC------------------CCCeEEEee
Q 038454 174 DLVKLQAEIAMALKL--SLTEDEDKVSRARRLLGKLKA----KKKFVLILDDI------------------DNHTFCWGL 229 (359)
Q Consensus 174 ~~~~~~~~i~~~l~~--~~~~~~~~~~~~~~l~~~l~~----~k~~LlVlDdv------------------~~g~ilvTt 229 (359)
+-..+-..-+...+. ....... .+.++.+.+.+.. +++-++|+|++ .+..+|++|
T Consensus 82 ~g~~~~~~~~~~~~~~~~~~~~I~-id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fILi~ 160 (314)
T PRK07399 82 QGKLITASEAEEAGLKRKAPPQIR-LEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTLILIA 160 (314)
T ss_pred cccccchhhhhhccccccccccCc-HHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEEEEE
Confidence 000000011111110 0000111 1223344444432 36678888888 323444444
Q ss_pred c---------ccceeeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHHH
Q 038454 230 R---------SMGCEEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTVV 288 (359)
Q Consensus 230 r---------~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~ 288 (359)
. ...|..+.+.+++.++..+.+....... ........++..++|.|..+..+.
T Consensus 161 ~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~------~~~~~~~~l~~~a~Gs~~~al~~l 222 (314)
T PRK07399 161 PSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEE------ILNINFPELLALAQGSPGAAIANI 222 (314)
T ss_pred CChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccc------cchhHHHHHHHHcCCCHHHHHHHH
Confidence 3 3456789999999999999998864211 111123678999999997665443
No 103
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.04 E-value=0.00022 Score=71.30 Aligned_cols=168 Identities=14% Similarity=0.245 Sum_probs=91.8
Q ss_pred cccccccchHHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHH
Q 038454 106 TTTLVGENTKKIVKKVWEDLMGDKV-TKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAM 184 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 184 (359)
-..++|.+. .+..|..++..+.+ ..+.++|+.|+||||+|+.+++.+. -.+..+. ..++.-.....|..
T Consensus 15 f~~iiGq~~--v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~-c~~~~~~-------~~c~~c~~c~~i~~ 84 (576)
T PRK14965 15 FSDLTGQEH--VSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALN-CEQGLTA-------EPCNVCPPCVEITE 84 (576)
T ss_pred HHHccCcHH--HHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhc-CCCCCCC-------CCCCccHHHHHHhc
Confidence 467899865 88888888887765 4678999999999999999988731 0011000 00000001111100
Q ss_pred HhcC-----CCCCCccHHHHHHHHHHHHh----cCCcEEEEEecC------------------CCC-eEEE-eec-----
Q 038454 185 ALKL-----SLTEDEDKVSRARRLLGKLK----AKKKFVLILDDI------------------DNH-TFCW-GLR----- 230 (359)
Q Consensus 185 ~l~~-----~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv------------------~~g-~ilv-Ttr----- 230 (359)
.-.. +...... .+.++.+.+.+. ..++-++|+|++ .+. .+|+ ||.
T Consensus 85 g~~~d~~eid~~s~~~-v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~ 163 (576)
T PRK14965 85 GRSVDVFEIDGASNTG-VDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVP 163 (576)
T ss_pred CCCCCeeeeeccCccC-HHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhh
Confidence 0000 0000001 111222222221 125567889998 233 4544 444
Q ss_pred ---ccceeeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCch-hHHHHH
Q 038454 231 ---SMGCEEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQ-LAIFTV 287 (359)
Q Consensus 231 ---~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P-lai~~~ 287 (359)
...|..+.+.+++.++....+...+-..+. .-..+.+..|++.++|.. .++..+
T Consensus 164 ~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi---~i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 164 ITILSRCQRFDFRRIPLQKIVDRLRYIADQEGI---SISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred HHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCC---CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 223567899999999988888776533322 122456777888888865 344443
No 104
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.03 E-value=8.3e-05 Score=67.68 Aligned_cols=46 Identities=20% Similarity=0.298 Sum_probs=31.0
Q ss_pred cccccch-HHHHHHHHHHhcCC------------CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 108 TLVGENT-KKIVKKVWEDLMGD------------KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 108 ~~vGr~~-~~~~~~l~~~l~~~------------~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.++|-+. ++.+.++..++... ...-+.++|++|+|||++|+.+++.
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~ 81 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQI 81 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHH
Confidence 4677665 44555555544211 1225889999999999999888776
No 105
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.03 E-value=7.8e-05 Score=67.08 Aligned_cols=46 Identities=24% Similarity=0.367 Sum_probs=33.2
Q ss_pred cccccch-HHHHHHHHHHhcC------------CCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 108 TLVGENT-KKIVKKVWEDLMG------------DKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 108 ~~vGr~~-~~~~~~l~~~l~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.++|.+. +..+.++..+... +....+.++|++|+||||+|+.+++.
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~ 65 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKL 65 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHH
Confidence 4777766 4455555555421 23456889999999999999999876
No 106
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.02 E-value=5.9e-05 Score=78.70 Aligned_cols=46 Identities=22% Similarity=0.340 Sum_probs=41.0
Q ss_pred ccccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHcCc
Q 038454 107 TTLVGENTKKIVKKVWEDLMGDKVTKIGVWGMGGFGKTAIMRHINNRP 154 (359)
Q Consensus 107 ~~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 154 (359)
.+++||+. ++..++..|.......+.++|.+|+|||+||..+++.+
T Consensus 178 ~~vigr~~--ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i 223 (857)
T PRK10865 178 DPVIGRDE--EIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 223 (857)
T ss_pred CcCCCCHH--HHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHh
Confidence 57999976 89999999988777778899999999999999999884
No 107
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.01 E-value=0.00044 Score=69.52 Aligned_cols=170 Identities=15% Similarity=0.204 Sum_probs=95.1
Q ss_pred cccccccchHHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHH
Q 038454 106 TTTLVGENTKKIVKKVWEDLMGDKV-TKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAM 184 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 184 (359)
-..++|.+. .+..|..++..+.. ..+.++|+.|+||||+|+.+++.+ ......... ...+..-..++.+..
T Consensus 15 f~~liGq~~--i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L--~c~~~~~~~----~~~Cg~C~~C~~i~~ 86 (620)
T PRK14948 15 FDELVGQEA--IATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSL--NCLNSDKPT----PEPCGKCELCRAIAA 86 (620)
T ss_pred HhhccChHH--HHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHh--cCCCcCCCC----CCCCcccHHHHHHhc
Confidence 357888865 78888888887654 678999999999999999999883 111111000 001111122222222
Q ss_pred HhcCC-----CCCCccHHHHHHHHHHHHhc----CCcEEEEEecC-----------------CCC--eEE-Eeec-----
Q 038454 185 ALKLS-----LTEDEDKVSRARRLLGKLKA----KKKFVLILDDI-----------------DNH--TFC-WGLR----- 230 (359)
Q Consensus 185 ~l~~~-----~~~~~~~~~~~~~l~~~l~~----~k~~LlVlDdv-----------------~~g--~il-vTtr----- 230 (359)
..+.+ ....... +.++.+.+.... +++-++|+|++ .++ .+| +|+.
T Consensus 87 g~h~D~~ei~~~~~~~v-d~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~ll 165 (620)
T PRK14948 87 GNALDVIEIDAASNTGV-DNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVL 165 (620)
T ss_pred CCCccEEEEeccccCCH-HHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhh
Confidence 11110 0001111 122222222211 25568899998 223 334 4443
Q ss_pred ---ccceeeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHH
Q 038454 231 ---SMGCEEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTV 287 (359)
Q Consensus 231 ---~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 287 (359)
...|..+.+.+++.++....+...+...+.. -..+.+..|++.++|.+..+..+
T Consensus 166 pTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~---is~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 166 PTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIE---IEPEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred HHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 2346678899999999888877765432221 12356788999999987655443
No 108
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.97 E-value=7.4e-05 Score=71.66 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=22.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..+-+.++|++|+|||++|+.+++.
T Consensus 216 ~p~gVLL~GPPGTGKT~LAraIA~e 240 (438)
T PTZ00361 216 PPKGVILYGPPGTGKTLLAKAVANE 240 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHh
Confidence 3567889999999999999999998
No 109
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.96 E-value=0.00061 Score=67.83 Aligned_cols=166 Identities=17% Similarity=0.217 Sum_probs=92.7
Q ss_pred cccccccchHHHHHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHH
Q 038454 106 TTTLVGENTKKIVKKVWEDLMGDK-VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAM 184 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 184 (359)
-..++|.+. .+..|.+++..++ ...+.++|+.|+||||+|+.+++.+. -.+.-+ ..+++.-...+.|..
T Consensus 15 f~~viGq~~--v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~-c~~~~~-------~~pC~~C~~C~~i~~ 84 (559)
T PRK05563 15 FEDVVGQEH--ITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVN-CLNPPD-------GEPCNECEICKAITN 84 (559)
T ss_pred HHhccCcHH--HHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc-CCCCCC-------CCCCCccHHHHHHhc
Confidence 467899866 8888888887765 45678899999999999999987631 001000 000011011111111
Q ss_pred HhcCC-----CCCCccHHHHHHHHHHHHh----cCCcEEEEEecC-----------------C-CC-eEE-Eeec-----
Q 038454 185 ALKLS-----LTEDEDKVSRARRLLGKLK----AKKKFVLILDDI-----------------D-NH-TFC-WGLR----- 230 (359)
Q Consensus 185 ~l~~~-----~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv-----------------~-~g-~il-vTtr----- 230 (359)
....+ ...... .+.++.+..... ..+.-++|+|++ . .. .+| .||.
T Consensus 85 g~~~dv~eidaas~~~-vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~ 163 (559)
T PRK05563 85 GSLMDVIEIDAASNNG-VDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIP 163 (559)
T ss_pred CCCCCeEEeeccccCC-HHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCc
Confidence 10000 000011 112222222211 125668889998 2 23 334 4444
Q ss_pred ---ccceeeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHH
Q 038454 231 ---SMGCEEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIF 285 (359)
Q Consensus 231 ---~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~ 285 (359)
...+..+.+.+++.++..+.+...+-..+. .-..+.+..|++.++|.+.-+.
T Consensus 164 ~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi---~i~~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 164 ATILSRCQRFDFKRISVEDIVERLKYILDKEGI---EYEDEALRLIARAAEGGMRDAL 218 (559)
T ss_pred HHHHhHheEEecCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHH
Confidence 223567899999999999888877643322 1124567788888888775443
No 110
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.96 E-value=5e-05 Score=60.52 Aligned_cols=85 Identities=26% Similarity=0.199 Sum_probs=48.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAMALKLSLTEDEDKVSRARRLLGKLKAK 210 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 210 (359)
..+.|+|++|+||||+++.+++.+ ......+++++.+........... ...................+.......
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAREL---GPPGGGVIYIDGEDILEEVLDQLL--LIIVGGKKASGSGELRLRLALALARKL 77 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhcc---CCCCCCEEEECCEEccccCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHHhc
Confidence 578999999999999999999983 222233566655443222221111 111111112233344444555555542
Q ss_pred CcEEEEEecC
Q 038454 211 KKFVLILDDI 220 (359)
Q Consensus 211 k~~LlVlDdv 220 (359)
+..++++|++
T Consensus 78 ~~~viiiDei 87 (148)
T smart00382 78 KPDVLILDEI 87 (148)
T ss_pred CCCEEEEECC
Confidence 3499999998
No 111
>CHL00181 cbbX CbbX; Provisional
Probab=97.96 E-value=0.00017 Score=65.75 Aligned_cols=46 Identities=22% Similarity=0.273 Sum_probs=31.2
Q ss_pred cccccch-HHHHHHHHHHhcC------------CCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 108 TLVGENT-KKIVKKVWEDLMG------------DKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 108 ~~vGr~~-~~~~~~l~~~l~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.++|-+. ++.+.++..++.- +....+.++|++|+||||+|+.+++.
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~ 82 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADI 82 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 4677655 4444455444321 12235889999999999999999876
No 112
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.95 E-value=0.00032 Score=65.05 Aligned_cols=57 Identities=16% Similarity=0.194 Sum_probs=39.9
Q ss_pred eEEEeec---------ccceeeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHH
Q 038454 224 TFCWGLR---------SMGCEEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTV 287 (359)
Q Consensus 224 ~ilvTtr---------~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 287 (359)
.+|++|. ...|..+.+.+++.+++.+.+...... ...+.+..++..++|.|+....+
T Consensus 138 ~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~-------~~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 138 VLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPE-------SDERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred EEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhccc-------CChHHHHHHHHHcCCCHHHHHHH
Confidence 5566665 345678999999999999988765311 12345567889999999765444
No 113
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=0.00055 Score=62.53 Aligned_cols=154 Identities=16% Similarity=0.226 Sum_probs=86.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHh
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAMALKLSLTEDEDKVSRARRLLGKLK 208 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 208 (359)
.++=|.+||++|.|||-||++|+++ ....| +.+..+ ++.+..- .....+.+.+.+.-+
T Consensus 184 PPKGVLLYGPPGTGKTLLAkAVA~~---T~AtF-----IrvvgS--------ElVqKYi------GEGaRlVRelF~lAr 241 (406)
T COG1222 184 PPKGVLLYGPPGTGKTLLAKAVANQ---TDATF-----IRVVGS--------ELVQKYI------GEGARLVRELFELAR 241 (406)
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhc---cCceE-----EEeccH--------HHHHHHh------ccchHHHHHHHHHHh
Confidence 5677999999999999999999999 33333 333321 1111111 122334455555555
Q ss_pred cCCcEEEEEecC---------------------------------CCC--eEEEeec----------ccce--eeeecCC
Q 038454 209 AKKKFVLILDDI---------------------------------DNH--TFCWGLR----------SMGC--EEVRVPP 241 (359)
Q Consensus 209 ~~k~~LlVlDdv---------------------------------~~g--~ilvTtr----------~~~~--~~~~l~~ 241 (359)
.+.+.+|.+|.+ ..| |||..|. +.|- ..++++.
T Consensus 242 ekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfpl 321 (406)
T COG1222 242 EKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPL 321 (406)
T ss_pred hcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCC
Confidence 556777777777 233 8888776 2222 3577775
Q ss_pred CChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCch----hHHHHHHHhh--cCC---CChhHHHHHHHHHh
Q 038454 242 LSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQ----LAIFTVVGCM--RGV---DEIHEWRNALNELR 308 (359)
Q Consensus 242 L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P----lai~~~~~~L--~~~---~~~~~w~~~l~~~~ 308 (359)
-+.+.-.++|.-++..-.....-++ +.+++.|.|.- .|+.+=|+++ +.. -+.+.+..+.++..
T Consensus 322 Pd~~gR~~Il~IHtrkM~l~~dvd~----e~la~~~~g~sGAdlkaictEAGm~AiR~~R~~Vt~~DF~~Av~KV~ 393 (406)
T COG1222 322 PDEEGRAEILKIHTRKMNLADDVDL----ELLARLTEGFSGADLKAICTEAGMFAIRERRDEVTMEDFLKAVEKVV 393 (406)
T ss_pred CCHHHHHHHHHHHhhhccCccCcCH----HHHHHhcCCCchHHHHHHHHHHhHHHHHhccCeecHHHHHHHHHHHH
Confidence 5555555667666533332233333 34555565554 4455555554 222 44566666666654
No 114
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.92 E-value=0.00067 Score=59.33 Aligned_cols=51 Identities=22% Similarity=0.341 Sum_probs=38.1
Q ss_pred ccCCcccccccchHHHHHHHHH----HhcCCCccEEEEEcCCCCcHHHHHHHHHcCc
Q 038454 102 LILPTTTLVGENTKKIVKKVWE----DLMGDKVTKIGVWGMGGFGKTAIMRHINNRP 154 (359)
Q Consensus 102 ~~~~~~~~vGr~~~~~~~~l~~----~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 154 (359)
.+.+.+.++|.+. .++.|++ ++......-+.+||..|+|||+|++++.+.+
T Consensus 22 ~~~~l~~L~Gie~--Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y 76 (249)
T PF05673_consen 22 DPIRLDDLIGIER--QKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEY 76 (249)
T ss_pred CCCCHHHhcCHHH--HHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHH
Confidence 3445578999876 4444443 4445566779999999999999999999884
No 115
>PRK08116 hypothetical protein; Validated
Probab=97.92 E-value=5.1e-05 Score=68.41 Aligned_cols=73 Identities=32% Similarity=0.388 Sum_probs=44.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAMALKLSLTEDEDKVSRARRLLGKLKAK 210 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 210 (359)
..+.++|.+|+|||.||.++++.+ ... -..+++++ ..+++..+........ ..+ ...+.+.+..
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l--~~~-~~~v~~~~------~~~ll~~i~~~~~~~~--~~~----~~~~~~~l~~- 178 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANEL--IEK-GVPVIFVN------FPQLLNRIKSTYKSSG--KED----ENEIIRSLVN- 178 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH--HHc-CCeEEEEE------HHHHHHHHHHHHhccc--ccc----HHHHHHHhcC-
Confidence 458999999999999999999984 222 23356664 4445555554443221 111 2223344443
Q ss_pred CcEEEEEecC
Q 038454 211 KKFVLILDDI 220 (359)
Q Consensus 211 k~~LlVlDdv 220 (359)
- =||||||+
T Consensus 179 ~-dlLviDDl 187 (268)
T PRK08116 179 A-DLLILDDL 187 (268)
T ss_pred C-CEEEEecc
Confidence 3 38999998
No 116
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.90 E-value=0.00012 Score=69.55 Aligned_cols=25 Identities=20% Similarity=0.376 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.++-+.++|++|+|||+||+.+++.
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~~ 202 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAHH 202 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHh
Confidence 4577999999999999999999998
No 117
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.89 E-value=0.00014 Score=70.93 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=23.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcCc
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNRP 154 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 154 (359)
.++-+.++|++|+|||++|+.+++.+
T Consensus 215 ~p~GILLyGPPGTGKT~LAKAlA~eL 240 (512)
T TIGR03689 215 PPKGVLLYGPPGCGKTLIAKAVANSL 240 (512)
T ss_pred CCcceEEECCCCCcHHHHHHHHHHhh
Confidence 35669999999999999999999983
No 118
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.88 E-value=0.00056 Score=64.52 Aligned_cols=178 Identities=17% Similarity=0.237 Sum_probs=99.0
Q ss_pred cccccchHHHHHHHHHHhcCC--CccEEEEEcCCCCcHHHHHHHHHcCcccccCCCc--cEEEEEeCCCcCHHHHHHHHH
Q 038454 108 TLVGENTKKIVKKVWEDLMGD--KVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFS--DVIWVTVSQPLDLVKLQAEIA 183 (359)
Q Consensus 108 ~~vGr~~~~~~~~l~~~l~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~--~~~wv~~~~~~~~~~~~~~i~ 183 (359)
-++|-...........+-... ....+.|+|..|.|||.|++++.+.. ..... .+++++ .+.....++
T Consensus 89 Fv~g~~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~---~~~~~~a~v~y~~------se~f~~~~v 159 (408)
T COG0593 89 FVVGPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEA---LANGPNARVVYLT------SEDFTNDFV 159 (408)
T ss_pred eeeCCchHHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHH---HhhCCCceEEecc------HHHHHHHHH
Confidence 345544333333333344333 36789999999999999999999983 33333 244432 333444444
Q ss_pred HHhcCCCCCCccHHHHHHHHHHHHhcCCcEEEEEecC---------------------CCC-eEEEeec-----------
Q 038454 184 MALKLSLTEDEDKVSRARRLLGKLKAKKKFVLILDDI---------------------DNH-TFCWGLR----------- 230 (359)
Q Consensus 184 ~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv---------------------~~g-~ilvTtr----------- 230 (359)
..+.. .....+++.. . -=++++||+ ..| .|++|++
T Consensus 160 ~a~~~---------~~~~~Fk~~y-~--~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~ 227 (408)
T COG0593 160 KALRD---------NEMEKFKEKY-S--LDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLED 227 (408)
T ss_pred HHHHh---------hhHHHHHHhh-c--cCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccH
Confidence 43332 1233344443 2 237778888 556 8888887
Q ss_pred ----ccc-eeeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCC----chhHHHHHHHh---hcCCCChh
Q 038454 231 ----SMG-CEEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAG----LQLAIFTVVGC---MRGVDEIH 298 (359)
Q Consensus 231 ----~~~-~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g----~Plai~~~~~~---L~~~~~~~ 298 (359)
+.. +-.+++.+.+.+....++.+.+...+...++ ++..-|++.... +.-|+..+..+ ....-+.+
T Consensus 228 rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~---ev~~~la~~~~~nvReLegaL~~l~~~a~~~~~~iTi~ 304 (408)
T COG0593 228 RLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPD---EVLEFLAKRLDRNVRELEGALNRLDAFALFTKRAITID 304 (408)
T ss_pred HHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCH---HHHHHHHHHhhccHHHHHHHHHHHHHHHHhcCccCcHH
Confidence 111 2468999999999999999977544433332 333334433332 23333222222 11124556
Q ss_pred HHHHHHHHHhh
Q 038454 299 EWRNALNELRG 309 (359)
Q Consensus 299 ~w~~~l~~~~~ 309 (359)
.-..++..+..
T Consensus 305 ~v~e~L~~~~~ 315 (408)
T COG0593 305 LVKEILKDLLR 315 (408)
T ss_pred HHHHHHHHhhc
Confidence 66666666554
No 119
>PRK08118 topology modulation protein; Reviewed
Probab=97.86 E-value=8.7e-06 Score=68.01 Aligned_cols=36 Identities=25% Similarity=0.566 Sum_probs=28.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEE
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIW 166 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~w 166 (359)
+.|.|+|++|+||||||+.+++.+.-..-+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 358999999999999999999984323356777775
No 120
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.85 E-value=0.0038 Score=58.91 Aligned_cols=175 Identities=15% Similarity=0.185 Sum_probs=113.0
Q ss_pred HHHHHHHHHhcCCCccEEEEEcCCCCcHHHHH-HHHHcCcccccCCCccEEEEEeCC---CcCHHHHHHHHHHHhcCCC-
Q 038454 116 KIVKKVWEDLMGDKVTKIGVWGMGGFGKTAIM-RHINNRPQEETNEFSDVIWVTVSQ---PLDLVKLQAEIAMALKLSL- 190 (359)
Q Consensus 116 ~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~~F~~~~wv~~~~---~~~~~~~~~~i~~~l~~~~- 190 (359)
+.+++|..||....-..|.|.|+-|+||+.|+ .++.++ .+ .++.+++.+ ..+-..++..++.++|.-+
T Consensus 3 e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~-r~------~vL~IDC~~i~~ar~D~~~I~~lA~qvGY~Pv 75 (431)
T PF10443_consen 3 EAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKD-RK------NVLVIDCDQIVKARGDAAFIKNLASQVGYFPV 75 (431)
T ss_pred hHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhC-CC------CEEEEEChHhhhccChHHHHHHHHHhcCCCcc
Confidence 36889999999988889999999999999999 777666 22 155555432 2334455555555544210
Q ss_pred -----------------------CCCccHHHHHHHHHHH----Hh-----------------------c--CCcEEEEEe
Q 038454 191 -----------------------TEDEDKVSRARRLLGK----LK-----------------------A--KKKFVLILD 218 (359)
Q Consensus 191 -----------------------~~~~~~~~~~~~l~~~----l~-----------------------~--~k~~LlVlD 218 (359)
.-..+.+..+..+... |+ . .++=++|+|
T Consensus 76 Fsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVVId 155 (431)
T PF10443_consen 76 FSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVVID 155 (431)
T ss_pred hHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEEEc
Confidence 0012333333222211 11 0 135689999
Q ss_pred cC----------------------CCC--eEEEeec----------c---cceeeeecCCCChHHHHHHHHHhhcCCCCC
Q 038454 219 DI----------------------DNH--TFCWGLR----------S---MGCEEVRVPPLSKEEALNLFLDKVGRNILH 261 (359)
Q Consensus 219 dv----------------------~~g--~ilvTtr----------~---~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~ 261 (359)
|+ .++ +||+.|- . .-...+.|...+.+.|.++...........
T Consensus 156 nF~~k~~~~~~iy~~laeWAa~Lv~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~~~~~~ 235 (431)
T PF10443_consen 156 NFLHKAEENDFIYDKLAEWAASLVQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLDEDTED 235 (431)
T ss_pred chhccCcccchHHHHHHHHHHHHHhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhcccccc
Confidence 99 333 7877775 1 122568999999999999999887443110
Q ss_pred ------------CC-----CchHHHHHHHHHHcCCchhHHHHHHHhhcCCCCh
Q 038454 262 ------------VP-----TLNEEIINSVVEECAGLQLAIFTVVGCMRGVDEI 297 (359)
Q Consensus 262 ------------~~-----~~~~~~~~~i~~~c~g~Plai~~~~~~L~~~~~~ 297 (359)
.+ ..........+..+||=-.=+..+++.++...++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p 288 (431)
T PF10443_consen 236 SSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESP 288 (431)
T ss_pred cccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCH
Confidence 00 1345566778899999999999999999886554
No 121
>PRK12377 putative replication protein; Provisional
Probab=97.84 E-value=3.1e-05 Score=68.72 Aligned_cols=72 Identities=28% Similarity=0.316 Sum_probs=44.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhc
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAMALKLSLTEDEDKVSRARRLLGKLKA 209 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 209 (359)
...+.++|.+|+|||.||.++++.+ ......++++++. +++..+-..... ..... .+.+.+.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l---~~~g~~v~~i~~~------~l~~~l~~~~~~----~~~~~----~~l~~l~- 162 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRL---LAKGRSVIVVTVP------DVMSRLHESYDN----GQSGE----KFLQELC- 162 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH---HHcCCCeEEEEHH------HHHHHHHHHHhc----cchHH----HHHHHhc-
Confidence 4679999999999999999999984 2222335666543 444444433321 11111 2333332
Q ss_pred CCcEEEEEecC
Q 038454 210 KKKFVLILDDI 220 (359)
Q Consensus 210 ~k~~LlVlDdv 220 (359)
+--||||||+
T Consensus 163 -~~dLLiIDDl 172 (248)
T PRK12377 163 -KVDLLVLDEI 172 (248)
T ss_pred -CCCEEEEcCC
Confidence 6779999998
No 122
>PRK08181 transposase; Validated
Probab=97.84 E-value=0.00042 Score=62.30 Aligned_cols=76 Identities=25% Similarity=0.305 Sum_probs=45.5
Q ss_pred HHhcCCCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHH
Q 038454 123 EDLMGDKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAMALKLSLTEDEDKVSRARR 202 (359)
Q Consensus 123 ~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 202 (359)
+|+... ..+.++|++|+|||.||..+.+.. ....+ .+.|++ ..+++..+..... ..+...
T Consensus 101 ~~~~~~--~nlll~Gp~GtGKTHLa~Aia~~a--~~~g~-~v~f~~------~~~L~~~l~~a~~-----~~~~~~---- 160 (269)
T PRK08181 101 SWLAKG--ANLLLFGPPGGGKSHLAAAIGLAL--IENGW-RVLFTR------TTDLVQKLQVARR-----ELQLES---- 160 (269)
T ss_pred HHHhcC--ceEEEEecCCCcHHHHHHHHHHHH--HHcCC-ceeeee------HHHHHHHHHHHHh-----CCcHHH----
Confidence 465533 569999999999999999999873 22222 355554 3445555533221 112222
Q ss_pred HHHHHhcCCcEEEEEecC
Q 038454 203 LLGKLKAKKKFVLILDDI 220 (359)
Q Consensus 203 l~~~l~~~k~~LlVlDdv 220 (359)
..+.+. +.-||||||+
T Consensus 161 ~l~~l~--~~dLLIIDDl 176 (269)
T PRK08181 161 AIAKLD--KFDLLILDDL 176 (269)
T ss_pred HHHHHh--cCCEEEEecc
Confidence 223332 4569999998
No 123
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.81 E-value=0.0016 Score=57.87 Aligned_cols=93 Identities=14% Similarity=0.013 Sum_probs=55.4
Q ss_pred eeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHHHHhhcC------C--CChhHHHHHHHHH
Q 038454 236 EVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTVVGCMRG------V--DEIHEWRNALNEL 307 (359)
Q Consensus 236 ~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~L~~------~--~~~~~w~~~l~~~ 307 (359)
..+++--+.+|-.+...+.+..-+. .-..+.+.+|++...|-|--..-+-+..+. . -+..--..+++.+
T Consensus 175 ~~rlefY~~~eL~~Iv~r~a~~l~i---~i~~~~a~eIA~rSRGTPRIAnRLLrRVRDfa~V~~~~~I~~~ia~~aL~~L 251 (332)
T COG2255 175 IQRLEFYTVEELEEIVKRSAKILGI---EIDEEAALEIARRSRGTPRIANRLLRRVRDFAQVKGDGDIDRDIADKALKML 251 (332)
T ss_pred eeeeecCCHHHHHHHHHHHHHHhCC---CCChHHHHHHHHhccCCcHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHh
Confidence 4578888889999988887733222 223577899999999999766655555432 1 2233334455554
Q ss_pred hhcccccCCChhhHhhHHHHhhhc
Q 038454 308 RGLVRSFSGINADVLGRLEFSYLR 331 (359)
Q Consensus 308 ~~~~~~~~~~~~~~~~~l~~sy~~ 331 (359)
.-....+...+..+..++.-.|+.
T Consensus 252 ~Vd~~GLd~~D~k~L~~li~~f~G 275 (332)
T COG2255 252 DVDELGLDEIDRKYLRALIEQFGG 275 (332)
T ss_pred CcccccccHHHHHHHHHHHHHhCC
Confidence 433333444444555555555543
No 124
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.81 E-value=0.00037 Score=59.90 Aligned_cols=47 Identities=17% Similarity=0.207 Sum_probs=40.4
Q ss_pred cccccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHcCc
Q 038454 106 TTTLVGENTKKIVKKVWEDLMGDKVTKIGVWGMGGFGKTAIMRHINNRP 154 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 154 (359)
-..+||-+. .++.+.-...+++.+-+.|.||+|+||||-+..+++.+
T Consensus 26 l~dIVGNe~--tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~L 72 (333)
T KOG0991|consen 26 LQDIVGNED--TVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLAREL 72 (333)
T ss_pred HHHhhCCHH--HHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHH
Confidence 357899865 78787777788999999999999999999999998873
No 125
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.80 E-value=0.00068 Score=62.81 Aligned_cols=36 Identities=25% Similarity=0.279 Sum_probs=27.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEe
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTV 169 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~ 169 (359)
..+.++|.+|+|||.||..+++.+ ....+ .++|+++
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l--~~~g~-~V~y~t~ 219 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKEL--LDRGK-SVIYRTA 219 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHH--HHCCC-eEEEEEH
Confidence 779999999999999999999984 22333 3566654
No 126
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.80 E-value=5.2e-05 Score=66.51 Aligned_cols=36 Identities=19% Similarity=0.392 Sum_probs=30.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEe
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTV 169 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~ 169 (359)
-.++|+|.+|+|||||+..+... ....|+++++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~---~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYY---LRHKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHh---hcccCCEEEEEec
Confidence 46889999999999999999887 5678887777654
No 127
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.79 E-value=0.0017 Score=59.85 Aligned_cols=156 Identities=15% Similarity=0.143 Sum_probs=86.8
Q ss_pred HHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHcCcccccCCCcc-----EEEEEeCCCcCHHHHHHHHHHHhcCCC
Q 038454 117 IVKKVWEDLMGDKV-TKIGVWGMGGFGKTAIMRHINNRPQEETNEFSD-----VIWVTVSQPLDLVKLQAEIAMALKLSL 190 (359)
Q Consensus 117 ~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~-----~~wv~~~~~~~~~~~~~~i~~~l~~~~ 190 (359)
..+.+...+..+++ ..+.++|+.|+||+++|..+++.+. -.+...+ +-|+..+..+|+..+. .....
T Consensus 12 ~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~Ll-C~~~~~~~~c~~c~~~~~g~HPD~~~i~------~~p~~ 84 (319)
T PRK08769 12 AYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVL-ASGPDPAAAQRTRQLIAAGTHPDLQLVS------FIPNR 84 (319)
T ss_pred HHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHh-CCCCCCCCcchHHHHHhcCCCCCEEEEe------cCCCc
Confidence 56677777777664 4699999999999999999887631 0110100 0011001111100000 00000
Q ss_pred CC----CccHHHHHHHHHHHHhc----CCcEEEEEecC------------------CCC-eEEEeec---------ccce
Q 038454 191 TE----DEDKVSRARRLLGKLKA----KKKFVLILDDI------------------DNH-TFCWGLR---------SMGC 234 (359)
Q Consensus 191 ~~----~~~~~~~~~~l~~~l~~----~k~~LlVlDdv------------------~~g-~ilvTtr---------~~~~ 234 (359)
.. ..-..+.++.+.+.+.. +++-++|+|++ ..+ .+|++|. ...|
T Consensus 85 ~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRC 164 (319)
T PRK08769 85 TGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRC 164 (319)
T ss_pred ccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhh
Confidence 00 00112233334433321 25668889998 233 5555555 3456
Q ss_pred eeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHHH
Q 038454 235 EEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTVV 288 (359)
Q Consensus 235 ~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~ 288 (359)
..+.+.+++.+++.+.+... + .+ ...+..++..++|.|+....+.
T Consensus 165 q~i~~~~~~~~~~~~~L~~~--~----~~---~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 165 QRLEFKLPPAHEALAWLLAQ--G----VS---ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred eEeeCCCcCHHHHHHHHHHc--C----CC---hHHHHHHHHHcCCCHHHHHHHh
Confidence 78999999999999888753 1 11 2336678999999998765443
No 128
>CHL00176 ftsH cell division protein; Validated
Probab=97.79 E-value=0.00063 Score=68.49 Aligned_cols=47 Identities=21% Similarity=0.204 Sum_probs=36.7
Q ss_pred ccccccch-HHHHHHHHHHhcCC---------CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 107 TTLVGENT-KKIVKKVWEDLMGD---------KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 107 ~~~vGr~~-~~~~~~l~~~l~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..+.|.+. ++++.+++.++.+. .++-|.++|++|+|||+||+.+++.
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e 239 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGE 239 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 46788766 55667777776543 2456999999999999999999987
No 129
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.79 E-value=0.00078 Score=66.37 Aligned_cols=47 Identities=17% Similarity=0.230 Sum_probs=34.2
Q ss_pred ccccccch-HHHHHHHHHHhcC---------CCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 107 TTLVGENT-KKIVKKVWEDLMG---------DKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 107 ~~~vGr~~-~~~~~~l~~~l~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..++|.+. ++.+.+++.++.+ ..++-+.++|++|+|||+||+.+++.
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~ 111 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 111 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 46778765 4445556655543 23456899999999999999999987
No 130
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.78 E-value=5e-05 Score=60.34 Aligned_cols=21 Identities=33% Similarity=0.444 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 038454 133 IGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 133 i~I~G~gGiGKTtLa~~v~~~ 153 (359)
|.|+|++|+|||++|+.+++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 679999999999999999998
No 131
>PRK07261 topology modulation protein; Provisional
Probab=97.77 E-value=9.5e-05 Score=62.03 Aligned_cols=35 Identities=20% Similarity=0.393 Sum_probs=25.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEE
Q 038454 132 KIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIW 166 (359)
Q Consensus 132 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~w 166 (359)
.|.|+|++|+||||||+.+...+.-..-+.|...|
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~ 36 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHF 36 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence 48999999999999999998763111223455555
No 132
>PRK06526 transposase; Provisional
Probab=97.76 E-value=0.00033 Score=62.53 Aligned_cols=24 Identities=25% Similarity=0.281 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
...+.++|++|+|||+||..+.+.
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~ 121 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIR 121 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHH
Confidence 456999999999999999999887
No 133
>PHA00729 NTP-binding motif containing protein
Probab=97.72 E-value=0.00017 Score=62.57 Aligned_cols=34 Identities=18% Similarity=0.261 Sum_probs=28.1
Q ss_pred HHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 120 KVWEDLMGDKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 120 ~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.++..+..++...|.|+|.+|+||||||..+.+.
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 4455556666678999999999999999999987
No 134
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.71 E-value=0.00023 Score=66.26 Aligned_cols=102 Identities=13% Similarity=0.138 Sum_probs=65.2
Q ss_pred HHHHHHHHhcC-CCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCcc-EEEEEeCCC-cCHHHHHHHHHHHhcCCCCCC
Q 038454 117 IVKKVWEDLMG-DKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSD-VIWVTVSQP-LDLVKLQAEIAMALKLSLTED 193 (359)
Q Consensus 117 ~~~~l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~-~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~ 193 (359)
...++++.+.. +.-.-+.|+|.+|+|||||++.+++.+ ..++-+. ++|+-+.+. .++.++.+.+...+.....+.
T Consensus 119 ~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i--~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de 196 (380)
T PRK12608 119 LSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAV--AANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDR 196 (380)
T ss_pred hhHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHH--HhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCC
Confidence 33456666653 333567999999999999999999873 2223344 467666654 578889888888777643222
Q ss_pred ccHH-----HHHHHHHHHH-hcCCcEEEEEecC
Q 038454 194 EDKV-----SRARRLLGKL-KAKKKFVLILDDI 220 (359)
Q Consensus 194 ~~~~-----~~~~~l~~~l-~~~k~~LlVlDdv 220 (359)
.... .......+++ ..+++++||+|++
T Consensus 197 ~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsl 229 (380)
T PRK12608 197 PPDEHIRVAELVLERAKRLVEQGKDVVILLDSL 229 (380)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 2111 1222233333 2369999999999
No 135
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.70 E-value=0.0029 Score=65.80 Aligned_cols=46 Identities=22% Similarity=0.260 Sum_probs=34.3
Q ss_pred cccccccchHHHHHHHHHHhc------CCCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 106 TTTLVGENTKKIVKKVWEDLM------GDKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l~------~~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
...++|.+. .++.+.+++. ....+++.++|++|+|||++|+.+++.
T Consensus 319 ~~~~~G~~~--~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~ 370 (775)
T TIGR00763 319 DEDHYGLKK--VKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKA 370 (775)
T ss_pred hhhcCChHH--HHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 345778765 6666665442 123458999999999999999999988
No 136
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.70 E-value=0.00016 Score=62.70 Aligned_cols=86 Identities=13% Similarity=0.184 Sum_probs=53.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHHHh-c-------C-CCCCCccHHHHH
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAMAL-K-------L-SLTEDEDKVSRA 200 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l-~-------~-~~~~~~~~~~~~ 200 (359)
-.++.|+|.+|+|||+++.+++... ...-..++|++... ++...+.+. +... . . ......+.....
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~---~~~g~~v~yi~~e~-~~~~rl~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~ 86 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNA---ARQGKKVVYIDTEG-LSPERFKQI-AEDRPERALSNFIVFEVFDFDEQGVAI 86 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH---HhCCCeEEEEECCC-CCHHHHHHH-HHhChHHHhcCEEEEECCCHHHHHHHH
Confidence 4789999999999999999998772 22335688998865 665555443 2221 0 0 111111223335
Q ss_pred HHHHHHHhcCCcEEEEEecC
Q 038454 201 RRLLGKLKAKKKFVLILDDI 220 (359)
Q Consensus 201 ~~l~~~l~~~k~~LlVlDdv 220 (359)
..+.+.+...+.-+||+|.+
T Consensus 87 ~~l~~~~~~~~~~lvVIDSi 106 (209)
T TIGR02237 87 QKTSKFIDRDSASLVVVDSF 106 (209)
T ss_pred HHHHHHHhhcCccEEEEeCc
Confidence 55555555435668999997
No 137
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.67 E-value=0.0013 Score=61.22 Aligned_cols=44 Identities=18% Similarity=0.232 Sum_probs=33.8
Q ss_pred cccc-cchHHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 108 TLVG-ENTKKIVKKVWEDLMGDKV-TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 108 ~~vG-r~~~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.++| .+ ..++.|...+..+++ ....++|+.|+||||+|..+++.
T Consensus 6 ~i~~~q~--~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~ 51 (329)
T PRK08058 6 QLTALQP--VVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKS 51 (329)
T ss_pred HHHhhHH--HHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3556 43 366777777776654 56799999999999999999876
No 138
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.66 E-value=0.00022 Score=60.12 Aligned_cols=71 Identities=34% Similarity=0.458 Sum_probs=41.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhc
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAMALKLSLTEDEDKVSRARRLLGKLKA 209 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 209 (359)
..-+.++|.+|+|||.||..+.+.. ....+. +.|++ ..+++..+ ..... ..... .+.+.+.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~--~~~g~~-v~f~~------~~~L~~~l----~~~~~-~~~~~----~~~~~l~- 107 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEA--IRKGYS-VLFIT------ASDLLDEL----KQSRS-DGSYE----ELLKRLK- 107 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHH--HHTT---EEEEE------HHHHHHHH----HCCHC-CTTHC----HHHHHHH-
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHh--ccCCcc-eeEee------cCceeccc----ccccc-ccchh----hhcCccc-
Confidence 4679999999999999999999873 223333 56664 33444443 32211 11222 2233343
Q ss_pred CCcEEEEEecC
Q 038454 210 KKKFVLILDDI 220 (359)
Q Consensus 210 ~k~~LlVlDdv 220 (359)
+-=||||||+
T Consensus 108 -~~dlLilDDl 117 (178)
T PF01695_consen 108 -RVDLLILDDL 117 (178)
T ss_dssp -TSSCEEEETC
T ss_pred -cccEeccccc
Confidence 4568889999
No 139
>PRK09183 transposase/IS protein; Provisional
Probab=97.64 E-value=0.001 Score=59.73 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
...+.|+|++|+|||+||..+++.
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~ 125 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYE 125 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 356889999999999999999876
No 140
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.62 E-value=0.00042 Score=69.40 Aligned_cols=46 Identities=15% Similarity=0.190 Sum_probs=37.0
Q ss_pred cccccccchHHHHHHHHHHhcCC-----CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 106 TTTLVGENTKKIVKKVWEDLMGD-----KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l~~~-----~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
...++|.+. .+.++..|+... ..+++.|+|++|+||||+++.++..
T Consensus 83 ldel~~~~~--ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 83 QHELAVHKK--KIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred HHHhcCcHH--HHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 457888855 777888888643 3357999999999999999999987
No 141
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.61 E-value=0.00055 Score=60.61 Aligned_cols=86 Identities=17% Similarity=0.245 Sum_probs=49.0
Q ss_pred HHHHHHHHhcC--CCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCc
Q 038454 117 IVKKVWEDLMG--DKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAMALKLSLTEDE 194 (359)
Q Consensus 117 ~~~~l~~~l~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~ 194 (359)
.+..+..+..+ .+...+.++|.+|+|||+||.++++.+. .. -..+++++ ..+++..+-..... ...
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~--~~-g~~v~~it------~~~l~~~l~~~~~~---~~~ 151 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELL--LR-GKSVLIIT------VADIMSAMKDTFSN---SET 151 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHH--hc-CCeEEEEE------HHHHHHHHHHHHhh---ccc
Confidence 34444444432 2345789999999999999999999842 22 22355553 34454444433321 111
Q ss_pred cHHHHHHHHHHHHhcCCcEEEEEecC
Q 038454 195 DKVSRARRLLGKLKAKKKFVLILDDI 220 (359)
Q Consensus 195 ~~~~~~~~l~~~l~~~k~~LlVlDdv 220 (359)
+.. .+.+.+. +.=||||||+
T Consensus 152 ~~~----~~l~~l~--~~dlLvIDDi 171 (244)
T PRK07952 152 SEE----QLLNDLS--NVDLLVIDEI 171 (244)
T ss_pred cHH----HHHHHhc--cCCEEEEeCC
Confidence 222 2333343 3558888998
No 142
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.56 E-value=0.0033 Score=56.54 Aligned_cols=56 Identities=18% Similarity=0.313 Sum_probs=37.3
Q ss_pred HHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHH
Q 038454 116 KIVKKVWEDLMGDKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQ 179 (359)
Q Consensus 116 ~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 179 (359)
+..+.+..++..+ ..|.+.|++|+|||+||+.+++. ... ...+++.....+..+++
T Consensus 9 ~l~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~---lg~---~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 9 RVTSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARK---RDR---PVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHH---hCC---CEEEEeCCccCCHHHHh
Confidence 3556666666665 45679999999999999999876 222 24455555554544443
No 143
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.56 E-value=0.0015 Score=57.21 Aligned_cols=47 Identities=21% Similarity=0.381 Sum_probs=35.8
Q ss_pred ccccccch-HHHHHHHHHHhcCC------CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 107 TTLVGENT-KKIVKKVWEDLMGD------KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 107 ~~~vGr~~-~~~~~~l~~~l~~~------~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
+.++|.+. ++.-.-|+..|.+. -++.|..+|++|.|||.+|+++++.
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane 174 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANE 174 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcc
Confidence 46788765 22223455666664 4789999999999999999999998
No 144
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.56 E-value=0.00036 Score=61.59 Aligned_cols=89 Identities=16% Similarity=0.214 Sum_probs=55.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCC----CccEEEEEeCCCcCHHHHHHHHHHHhcCCC------------CCC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNE----FSDVIWVTVSQPLDLVKLQAEIAMALKLSL------------TED 193 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~----F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------------~~~ 193 (359)
-.++.|+|.+|+|||+||.+++... ..... -..++|++....++..++. +++...+... ...
T Consensus 19 g~i~~i~G~~GsGKT~l~~~l~~~~-~~~~~~~g~~~~viyi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~~ 96 (235)
T cd01123 19 GSITEIFGEFGSGKTQLCHQLAVTV-QLPIELGGLEGKAVYIDTEGTFRPERLV-QIAERFGLDPEEVLDNIYVARAYNS 96 (235)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHe-eCccccCCCCccEEEEeCCCCcCHHHHH-HHHHHhccChHhHhcCEEEEecCCH
Confidence 4689999999999999999997541 11111 2568999988777665443 3333333211 111
Q ss_pred ccHHHHHHHHHHHHhcC-CcEEEEEecC
Q 038454 194 EDKVSRARRLLGKLKAK-KKFVLILDDI 220 (359)
Q Consensus 194 ~~~~~~~~~l~~~l~~~-k~~LlVlDdv 220 (359)
.+.......+.+.+... +.-|+|+|.+
T Consensus 97 ~~l~~~l~~l~~~l~~~~~~~liVIDSi 124 (235)
T cd01123 97 DHQLQLLEELEAILIESSRIKLVIVDSV 124 (235)
T ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEeCc
Confidence 12233445555666554 6779999997
No 145
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=0.015 Score=58.04 Aligned_cols=46 Identities=22% Similarity=0.255 Sum_probs=35.8
Q ss_pred cccccccchHHHHHHHHHHhc------CCCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 106 TTTLVGENTKKIVKKVWEDLM------GDKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l~------~~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..+-+|-+. .+++|++.|. .-.-++++++|++|+|||+|++.+++-
T Consensus 322 d~dHYGLek--VKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~a 373 (782)
T COG0466 322 DKDHYGLEK--VKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKA 373 (782)
T ss_pred cccccCchh--HHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHH
Confidence 345566655 7777877773 124479999999999999999999987
No 146
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.002 Score=65.02 Aligned_cols=154 Identities=15% Similarity=0.160 Sum_probs=92.5
Q ss_pred cccccccch-HHHHHHHHHHhcCC---------CccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCH
Q 038454 106 TTTLVGENT-KKIVKKVWEDLMGD---------KVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDL 175 (359)
Q Consensus 106 ~~~~vGr~~-~~~~~~l~~~l~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~ 175 (359)
-.++.|-+. +.++++++..|.++ -++=+.++|++|+|||-||++++-. .. +=|++++..
T Consensus 310 FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGE-Ag-------VPF~svSGS--- 378 (774)
T KOG0731|consen 310 FKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGE-AG-------VPFFSVSGS--- 378 (774)
T ss_pred cccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcc-cC-------CceeeechH---
Confidence 346777776 88899999999885 2556999999999999999999988 22 223444432
Q ss_pred HHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhcCCcEEEEEecC-----------------------------------
Q 038454 176 VKLQAEIAMALKLSLTEDEDKVSRARRLLGKLKAKKKFVLILDDI----------------------------------- 220 (359)
Q Consensus 176 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv----------------------------------- 220 (359)
++.+.+... .....+.+...-+.+.++++.+|++
T Consensus 379 -----EFvE~~~g~------~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~ 447 (774)
T KOG0731|consen 379 -----EFVEMFVGV------GASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFET 447 (774)
T ss_pred -----HHHHHhccc------chHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcC
Confidence 111111110 0223344444444445666666665
Q ss_pred CCC-eEEEeec----------ccce--eeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHH
Q 038454 221 DNH-TFCWGLR----------SMGC--EEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAI 284 (359)
Q Consensus 221 ~~g-~ilvTtr----------~~~~--~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai 284 (359)
..+ -++-+|+ +.|- ..+.++.-+.....++|.-++..-.. ..+..+..+ |+...-|.+=|.
T Consensus 448 ~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~--~~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 448 SKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKL--DDEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred CCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCC--CcchhhHHH-HHhcCCCCcHHH
Confidence 223 3333444 1221 34677777778888888887644322 234455555 888888877554
No 147
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.52 E-value=0.00059 Score=59.85 Aligned_cols=87 Identities=11% Similarity=0.158 Sum_probs=53.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCCC------ccEEEEEeCCCcCHHHHHHHHHHHhcCCC---------CCCc
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNEF------SDVIWVTVSQPLDLVKLQAEIAMALKLSL---------TEDE 194 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F------~~~~wv~~~~~~~~~~~~~~i~~~l~~~~---------~~~~ 194 (359)
-.++.|+|.+|+|||+||.+++... ...- ..++|++....++...+. .+....+... ....
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~---~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~ 94 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEA---QLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARPY 94 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHh---hcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeCC
Confidence 4689999999999999999987662 1122 457899887777765543 3333322110 0112
Q ss_pred cHHHHHHHHHHHHh---cCCcEEEEEecC
Q 038454 195 DKVSRARRLLGKLK---AKKKFVLILDDI 220 (359)
Q Consensus 195 ~~~~~~~~l~~~l~---~~k~~LlVlDdv 220 (359)
+.++....+.+... ..+.-|+|+|.+
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~lvVIDsi 123 (226)
T cd01393 95 NGEQQLEIVEELERIMSSGRVDLVVVDSV 123 (226)
T ss_pred CHHHHHHHHHHHHHHhhcCCeeEEEEcCc
Confidence 34444444444433 335569999997
No 148
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.52 E-value=0.0082 Score=55.47 Aligned_cols=151 Identities=11% Similarity=0.129 Sum_probs=83.7
Q ss_pred HHHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHcCcc--cccCCCcc-----EEEEEeCCCcCHHHHHHHHHHHhcC
Q 038454 117 IVKKVWEDLMGDK-VTKIGVWGMGGFGKTAIMRHINNRPQ--EETNEFSD-----VIWVTVSQPLDLVKLQAEIAMALKL 188 (359)
Q Consensus 117 ~~~~l~~~l~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~--~~~~~F~~-----~~wv~~~~~~~~~~~~~~i~~~l~~ 188 (359)
.-..+...+..+. ...+.++|+.|+||+++|..+++.+. .....-.| +-++..+..+|+..+ .
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i--------~- 80 (325)
T PRK06871 10 TYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHIL--------E- 80 (325)
T ss_pred HHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEE--------c-
Confidence 4456677776665 46788999999999999999987631 00000000 001111111111100 0
Q ss_pred CCCCCccHHHHHHHHHHHHhc----CCcEEEEEecC------------------CCC-eEEEeec---------ccceee
Q 038454 189 SLTEDEDKVSRARRLLGKLKA----KKKFVLILDDI------------------DNH-TFCWGLR---------SMGCEE 236 (359)
Q Consensus 189 ~~~~~~~~~~~~~~l~~~l~~----~k~~LlVlDdv------------------~~g-~ilvTtr---------~~~~~~ 236 (359)
+.....-..+.++.+.+.+.. +++-++|+|++ .++ .+|++|. ...|..
T Consensus 81 p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~ 160 (325)
T PRK06871 81 PIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQT 160 (325)
T ss_pred cccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceE
Confidence 000001112233334333321 35667889998 333 5555554 345678
Q ss_pred eecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHH
Q 038454 237 VRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAI 284 (359)
Q Consensus 237 ~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai 284 (359)
+.+.+++.+++.+.+...... ....+...+..++|.|+.+
T Consensus 161 ~~~~~~~~~~~~~~L~~~~~~--------~~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 161 WLIHPPEEQQALDWLQAQSSA--------EISEILTALRINYGRPLLA 200 (325)
T ss_pred EeCCCCCHHHHHHHHHHHhcc--------ChHHHHHHHHHcCCCHHHH
Confidence 999999999999888875311 1123566788999999644
No 149
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.002 Score=61.84 Aligned_cols=47 Identities=21% Similarity=0.268 Sum_probs=39.4
Q ss_pred ccccccch-HHHHHHHHHHhcCCC---------ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 107 TTLVGENT-KKIVKKVWEDLMGDK---------VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 107 ~~~vGr~~-~~~~~~l~~~l~~~~---------~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..+-|-|+ +.++++++++|.++. ++=|.++|++|.|||-||++++-.
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGE 360 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGE 360 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcc
Confidence 44566666 788999999998751 466999999999999999999988
No 150
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.50 E-value=0.0028 Score=59.50 Aligned_cols=87 Identities=18% Similarity=0.174 Sum_probs=51.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCC-CcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHh
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQ-PLDLVKLQAEIAMALKLSLTEDEDKVSRARRLLGKLK 208 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 208 (359)
..++.++|+.|+||||++..++..+ ........+..++... .....+.++...+.++.+.....+..+....+ ..+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~-~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l-~~l~ 214 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARC-VMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLAL-AELR 214 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHH-HHhc
Confidence 4689999999999999999999872 1121223455665433 23455666666777776443222323332222 3343
Q ss_pred cCCcEEEEEecC
Q 038454 209 AKKKFVLILDDI 220 (359)
Q Consensus 209 ~~k~~LlVlDdv 220 (359)
++-++++|..
T Consensus 215 --~~DlVLIDTa 224 (374)
T PRK14722 215 --NKHMVLIDTI 224 (374)
T ss_pred --CCCEEEEcCC
Confidence 3456668987
No 151
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.0024 Score=62.22 Aligned_cols=70 Identities=24% Similarity=0.421 Sum_probs=43.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHh
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAMALKLSLTEDEDKVSRARRLLGKLK 208 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 208 (359)
.++=|.+||++|+|||.||++++++ ..-.| +.++.+ +|..... ..+ +..++.+.+.-.
T Consensus 222 PprGvLlHGPPGCGKT~lA~AiAge---l~vPf-----~~isAp--------eivSGvS-----GES-EkkiRelF~~A~ 279 (802)
T KOG0733|consen 222 PPRGVLLHGPPGCGKTSLANAIAGE---LGVPF-----LSISAP--------EIVSGVS-----GES-EKKIRELFDQAK 279 (802)
T ss_pred CCCceeeeCCCCccHHHHHHHHhhh---cCCce-----Eeecch--------hhhcccC-----ccc-HHHHHHHHHHHh
Confidence 3567999999999999999999998 22233 333332 1222221 122 334444444444
Q ss_pred cCCcEEEEEecC
Q 038454 209 AKKKFVLILDDI 220 (359)
Q Consensus 209 ~~k~~LlVlDdv 220 (359)
+..++++++|++
T Consensus 280 ~~aPcivFiDeI 291 (802)
T KOG0733|consen 280 SNAPCIVFIDEI 291 (802)
T ss_pred ccCCeEEEeecc
Confidence 448999999998
No 152
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.50 E-value=0.00063 Score=58.31 Aligned_cols=88 Identities=20% Similarity=0.254 Sum_probs=56.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCC-CcCHHHHHHHHHHHhcCCCC---CCccHHHHHHHHHH
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQ-PLDLVKLQAEIAMALKLSLT---EDEDKVSRARRLLG 205 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~ 205 (359)
+++|.++|+.|+||||.+..++..+ ..+ -..+..++... .....+.++..++.++.+.. ...+..+......+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~-~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~ 77 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARL-KLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALE 77 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHH-HHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHH-hhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHH
Confidence 4789999999999999988888873 222 33477777653 34567788888999987532 22345555544444
Q ss_pred HHhcCCcEEEEEecC
Q 038454 206 KLKAKKKFVLILDDI 220 (359)
Q Consensus 206 ~l~~~k~~LlVlDdv 220 (359)
....++.=++++|-.
T Consensus 78 ~~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 78 KFRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHHTTSSEEEEEE-
T ss_pred HHhhcCCCEEEEecC
Confidence 444423346667765
No 153
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.00033 Score=70.89 Aligned_cols=133 Identities=19% Similarity=0.244 Sum_probs=86.7
Q ss_pred cccccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCc-----cEEEEEeCCCcCHHHHHH
Q 038454 106 TTTLVGENTKKIVKKVWEDLMGDKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFS-----DVIWVTVSQPLDLVKLQA 180 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~-----~~~wv~~~~~~~~~~~~~ 180 (359)
-++++||+. ++.++++.|....-.--.++|.+|+|||++|.-++.++ +.+.-+ ..++ + .++.
T Consensus 169 lDPvIGRd~--EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rI--v~g~VP~~L~~~~i~-s----LD~g---- 235 (786)
T COG0542 169 LDPVIGRDE--EIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRI--VNGDVPESLKDKRIY-S----LDLG---- 235 (786)
T ss_pred CCCCcChHH--HHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHH--hcCCCCHHHcCCEEE-E----ecHH----
Confidence 467999977 99999999976544445688999999999999888874 333222 1111 0 0111
Q ss_pred HHHHHhcCCCCCCccHHHHHHHHHHHHhcCCcEEEEEecC------------------------CCC--eEE-Eeec---
Q 038454 181 EIAMALKLSLTEDEDKVSRARRLLGKLKAKKKFVLILDDI------------------------DNH--TFC-WGLR--- 230 (359)
Q Consensus 181 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv------------------------~~g--~il-vTtr--- 230 (359)
.+.....-..+.++.+..+.+.+...++++|++|.+ ..| ++| .||-
T Consensus 236 ----~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IGATT~~EY 311 (786)
T COG0542 236 ----SLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATTLDEY 311 (786)
T ss_pred ----HHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEEeccHHHH
Confidence 111111123466777777777777646999999998 234 344 3443
Q ss_pred ----------ccceeeeecCCCChHHHHHHHHHhh
Q 038454 231 ----------SMGCEEVRVPPLSKEEALNLFLDKV 255 (359)
Q Consensus 231 ----------~~~~~~~~l~~L~~~ea~~lf~~~~ 255 (359)
....+++.+...+.+++..++....
T Consensus 312 Rk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 312 RKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred HHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 2234678999999999999887543
No 154
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=97.49 E-value=0.0063 Score=56.05 Aligned_cols=49 Identities=24% Similarity=0.261 Sum_probs=35.3
Q ss_pred eeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHH
Q 038454 236 EVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAI 284 (359)
Q Consensus 236 ~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai 284 (359)
++++++++.+|+..++..+.-.+-.......+...+++.-..+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 6799999999999999888744432122334556677777789999754
No 155
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.0016 Score=58.81 Aligned_cols=80 Identities=9% Similarity=0.165 Sum_probs=45.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCccccc--CCCccEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHH
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEET--NEFSDVIWVTVSQPLDLVKLQAEIAMALKLSLTEDEDKVSRARRLLGKL 207 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 207 (359)
-++|.++|++|.|||+|+++++++ ..++ +.+....-+.++.. ++.+....+ ...-......++.+.+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQk-LSIR~~~~y~~~~liEinsh--------sLFSKWFsE--SgKlV~kmF~kI~ELv 245 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQK-LSIRTNDRYYKGQLIEINSH--------SLFSKWFSE--SGKLVAKMFQKIQELV 245 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHh-heeeecCccccceEEEEehh--------HHHHHHHhh--hhhHHHHHHHHHHHHH
Confidence 478999999999999999999999 3333 33433333333221 122222211 1233445556666666
Q ss_pred hcCCc-EEEEEecC
Q 038454 208 KAKKK-FVLILDDI 220 (359)
Q Consensus 208 ~~~k~-~LlVlDdv 220 (359)
...+. +++.+|.|
T Consensus 246 ~d~~~lVfvLIDEV 259 (423)
T KOG0744|consen 246 EDRGNLVFVLIDEV 259 (423)
T ss_pred hCCCcEEEEEeHHH
Confidence 65233 34455888
No 156
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.48 E-value=0.00047 Score=63.32 Aligned_cols=72 Identities=24% Similarity=0.303 Sum_probs=45.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHh
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAMALKLSLTEDEDKVSRARRLLGKLK 208 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 208 (359)
..+-+.++|..|+|||.||.++++.+ ....+. +.|+++ ..++..+-..... .+.. ...+.+.
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l--~~~g~~-v~~~~~------~~l~~~lk~~~~~-----~~~~----~~l~~l~ 216 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANEL--AKKGVS-STLLHF------PEFIRELKNSISD-----GSVK----EKIDAVK 216 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH--HHcCCC-EEEEEH------HHHHHHHHHHHhc-----CcHH----HHHHHhc
Confidence 34679999999999999999999994 233333 455544 3455555444431 1122 2222332
Q ss_pred cCCcEEEEEecC
Q 038454 209 AKKKFVLILDDI 220 (359)
Q Consensus 209 ~~k~~LlVlDdv 220 (359)
+-=||||||+
T Consensus 217 --~~dlLiIDDi 226 (306)
T PRK08939 217 --EAPVLMLDDI 226 (306)
T ss_pred --CCCEEEEecC
Confidence 5669999999
No 157
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.47 E-value=0.00047 Score=60.50 Aligned_cols=85 Identities=20% Similarity=0.235 Sum_probs=51.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHHH--------hcCC-CCCCccHHHHH
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAMA--------LKLS-LTEDEDKVSRA 200 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~--------l~~~-~~~~~~~~~~~ 200 (359)
-.++.|+|.+|+|||++|.+++... ...-..++|++.. .++...+. ++... +... .....+.....
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~---~~~~~~v~yi~~e-~~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 97 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEA---AKNGKKVIYIDTE-GLSPERFK-QIAGEDFEELLSNIIIFEPSSFEEQSEAI 97 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH---HHCCCeEEEEECC-CCCHHHHH-HHHhhChHhHhhCeEEEeCCCHHHHHHHH
Confidence 4689999999999999999998873 1223458899877 55554443 22222 1111 11111222333
Q ss_pred HHHHHHHhcCCcEEEEEecC
Q 038454 201 RRLLGKLKAKKKFVLILDDI 220 (359)
Q Consensus 201 ~~l~~~l~~~k~~LlVlDdv 220 (359)
..+...+.. +.-++|+|.+
T Consensus 98 ~~~~~~~~~-~~~lvVIDsi 116 (225)
T PRK09361 98 RKAEKLAKE-NVGLIVLDSA 116 (225)
T ss_pred HHHHHHHHh-cccEEEEeCc
Confidence 444444444 6779999997
No 158
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.027 Score=53.31 Aligned_cols=164 Identities=12% Similarity=0.098 Sum_probs=84.9
Q ss_pred HHHHHHHHHHhcCCC---------ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHHH
Q 038454 115 KKIVKKVWEDLMGDK---------VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAMA 185 (359)
Q Consensus 115 ~~~~~~l~~~l~~~~---------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~ 185 (359)
++.+++|.+++.... -|=-.++|+||.|||+++.++++.+ .|+ ++=+.++...+-.+ ++.++..
T Consensus 211 ~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L-----~yd-IydLeLt~v~~n~d-Lr~LL~~ 283 (457)
T KOG0743|consen 211 ERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYL-----NYD-IYDLELTEVKLDSD-LRHLLLA 283 (457)
T ss_pred HHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhc-----CCc-eEEeeeccccCcHH-HHHHHHh
Confidence 556677777776531 2447899999999999999999983 344 33334443333333 4555443
Q ss_pred hcCCCC-CCccHHHHHHHHHHHHh--------cCCc-----EEEEEecC--CCC--eEE-Eeec----------ccce--
Q 038454 186 LKLSLT-EDEDKVSRARRLLGKLK--------AKKK-----FVLILDDI--DNH--TFC-WGLR----------SMGC-- 234 (359)
Q Consensus 186 l~~~~~-~~~~~~~~~~~l~~~l~--------~~k~-----~LlVlDdv--~~g--~il-vTtr----------~~~~-- 234 (359)
.....- -.+|.+..+ .+..... ...+ .|=.+|.+ ..| ||+ .||. +.|.
T Consensus 284 t~~kSIivIEDIDcs~-~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmD 362 (457)
T KOG0743|consen 284 TPNKSILLIEDIDCSF-DLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMD 362 (457)
T ss_pred CCCCcEEEEeeccccc-ccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcce
Confidence 321100 000000000 0000000 0011 22245666 333 655 4665 2222
Q ss_pred eeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHHHHhhc
Q 038454 235 EEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTVVGCMR 292 (359)
Q Consensus 235 ~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~L~ 292 (359)
..+.++-=+.+.-..|+.++..... ...+..+|.+...|.-+.=..++..|-
T Consensus 363 mhI~mgyCtf~~fK~La~nYL~~~~------~h~L~~eie~l~~~~~~tPA~V~e~lm 414 (457)
T KOG0743|consen 363 MHIYMGYCTFEAFKTLASNYLGIEE------DHRLFDEIERLIEETEVTPAQVAEELM 414 (457)
T ss_pred eEEEcCCCCHHHHHHHHHHhcCCCC------CcchhHHHHHHhhcCccCHHHHHHHHh
Confidence 2478888888888899888865432 124455555555565554445555543
No 159
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.46 E-value=8.3e-05 Score=58.33 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 038454 132 KIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 132 vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
+|+|.|++|+||||+|+.+++.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999987
No 160
>PRK06921 hypothetical protein; Provisional
Probab=97.44 E-value=0.0009 Score=60.25 Aligned_cols=39 Identities=21% Similarity=0.304 Sum_probs=28.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEe
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTV 169 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~ 169 (359)
....+.++|.+|+|||.||.++++.+ ....-..++|++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l--~~~~g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANEL--MRKKGVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH--hhhcCceEEEEEH
Confidence 45679999999999999999999983 2221233566654
No 161
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.44 E-value=0.0004 Score=63.80 Aligned_cols=83 Identities=14% Similarity=0.207 Sum_probs=54.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHHHhcCCC-----CCCccHHHHHHHHH
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAMALKLSL-----TEDEDKVSRARRLL 204 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~ 204 (359)
-+++-|+|++|+||||||.+++... ...-..++|++....++.. .+.+++.+. .+..+.++....+.
T Consensus 55 G~iteI~G~~GsGKTtLaL~~~~~~---~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~ 126 (321)
T TIGR02012 55 GRIIEIYGPESSGKTTLALHAIAEA---QKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAE 126 (321)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 4789999999999999999988772 2222447788776655543 244444321 11234455555555
Q ss_pred HHHhcCCcEEEEEecC
Q 038454 205 GKLKAKKKFVLILDDI 220 (359)
Q Consensus 205 ~~l~~~k~~LlVlDdv 220 (359)
..++.+..-++|+|.+
T Consensus 127 ~li~~~~~~lIVIDSv 142 (321)
T TIGR02012 127 TLVRSGAVDIIVVDSV 142 (321)
T ss_pred HHhhccCCcEEEEcch
Confidence 5555546779999998
No 162
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.43 E-value=0.00034 Score=58.88 Aligned_cols=36 Identities=31% Similarity=0.474 Sum_probs=28.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEE
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWV 167 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv 167 (359)
...+|.+.|++|+||||+|+.+++.+ ...+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l---~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERL---KLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH---HHcCCcEEEE
Confidence 45689999999999999999999883 3345555555
No 163
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.42 E-value=0.0029 Score=52.50 Aligned_cols=39 Identities=13% Similarity=0.194 Sum_probs=31.2
Q ss_pred HHHHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHcCc
Q 038454 116 KIVKKVWEDLMGDKVT-KIGVWGMGGFGKTAIMRHINNRP 154 (359)
Q Consensus 116 ~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~ 154 (359)
+..+.|...+.+++.+ .+.++|+.|+||+++|..+++.+
T Consensus 4 ~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~l 43 (162)
T PF13177_consen 4 EIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARAL 43 (162)
T ss_dssp HHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHH
Confidence 3677788888777654 68999999999999999998763
No 164
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.0016 Score=64.50 Aligned_cols=128 Identities=16% Similarity=0.157 Sum_probs=75.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCC--cCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHH
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQP--LDLVKLQAEIAMALKLSLTEDEDKVSRARRLLGKL 207 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 207 (359)
..-|.|.|..|+|||+||+++++.+ .++..-++.+|+++.- ..+..+++.+- ..+.+.+
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~--~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~-----------------~vfse~~ 491 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYY--SKDLIAHVEIVSCSTLDGSSLEKIQKFLN-----------------NVFSEAL 491 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHh--ccccceEEEEEechhccchhHHHHHHHHH-----------------HHHHHHH
Confidence 4579999999999999999999984 2455555667776542 22333333222 2223344
Q ss_pred hcCCcEEEEEecC---------------------------------CCC---eEEEeec----------ccc-e-eeeec
Q 038454 208 KAKKKFVLILDDI---------------------------------DNH---TFCWGLR----------SMG-C-EEVRV 239 (359)
Q Consensus 208 ~~~k~~LlVlDdv---------------------------------~~g---~ilvTtr----------~~~-~-~~~~l 239 (359)
.. .+.++||||+ ..+ .+|.|.. ... . ..+.+
T Consensus 492 ~~-~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L 570 (952)
T KOG0735|consen 492 WY-APSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIAL 570 (952)
T ss_pred hh-CCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEec
Confidence 44 7888899988 223 3455554 111 1 24688
Q ss_pred CCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCc
Q 038454 240 PPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGL 280 (359)
Q Consensus 240 ~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~ 280 (359)
+++...+-.++++....... .........-+..+|+|.
T Consensus 571 ~ap~~~~R~~IL~~~~s~~~---~~~~~~dLd~ls~~TEGy 608 (952)
T KOG0735|consen 571 PAPAVTRRKEILTTIFSKNL---SDITMDDLDFLSVKTEGY 608 (952)
T ss_pred CCcchhHHHHHHHHHHHhhh---hhhhhHHHHHHHHhcCCc
Confidence 88888887777766542221 111122333377777774
No 165
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.41 E-value=0.007 Score=59.99 Aligned_cols=176 Identities=13% Similarity=0.079 Sum_probs=107.2
Q ss_pred ccccccchHHHHHHHHHHhc----C-CCccEEEEEcCCCCcHHHHHHHHHcCccc-----ccCCCccEEEEEeCCCcCHH
Q 038454 107 TTLVGENTKKIVKKVWEDLM----G-DKVTKIGVWGMGGFGKTAIMRHINNRPQE-----ETNEFSDVIWVTVSQPLDLV 176 (359)
Q Consensus 107 ~~~vGr~~~~~~~~l~~~l~----~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-----~~~~F~~~~wv~~~~~~~~~ 176 (359)
..+-+|+. +..+|-.++. . +.-+.+-|.|.+|+|||..+..|.+.+.. .-..|+ .+.|+.-.-..+.
T Consensus 396 ~sLpcRe~--E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~ 472 (767)
T KOG1514|consen 396 ESLPCREN--EFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPR 472 (767)
T ss_pred ccccchhH--HHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHH
Confidence 34556654 6666665553 3 33458999999999999999999886321 123343 4555655666799
Q ss_pred HHHHHHHHHhcCCCCCCccHHHHHHHHHHHHh---c-CCcEEEEEecC-------------------CCC-eEEEeec--
Q 038454 177 KLQAEIAMALKLSLTEDEDKVSRARRLLGKLK---A-KKKFVLILDDI-------------------DNH-TFCWGLR-- 230 (359)
Q Consensus 177 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~---~-~k~~LlVlDdv-------------------~~g-~ilvTtr-- 230 (359)
++...|..++..... .....+..+..++. . .+..++++|++ .++ +++|-+=
T Consensus 473 ~~Y~~I~~~lsg~~~---~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaN 549 (767)
T KOG1514|consen 473 EIYEKIWEALSGERV---TWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIAN 549 (767)
T ss_pred HHHHHHHHhcccCcc---cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecc
Confidence 999999999987533 23334444444443 1 36788999998 344 5544332
Q ss_pred ---------------ccceeeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHHH
Q 038454 231 ---------------SMGCEEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTVV 288 (359)
Q Consensus 231 ---------------~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~ 288 (359)
..|...+.+.|-++++-.++......+.+.-.+...+-++++|+.-.|-.-.|+.+.-
T Consensus 550 TmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~ 622 (767)
T KOG1514|consen 550 TMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICR 622 (767)
T ss_pred cccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHH
Confidence 2344557778888887777776665443332223334445555555555555544443
No 166
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.41 E-value=0.00042 Score=63.71 Aligned_cols=83 Identities=17% Similarity=0.211 Sum_probs=54.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHHHhcCCC-----CCCccHHHHHHHHH
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAMALKLSL-----TEDEDKVSRARRLL 204 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~ 204 (359)
-+++-|+|++|+||||||.+++... ...-..++|++....++.. .+.+++.+. ....+.++....+.
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~---~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~ 126 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEA---QKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIAD 126 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH---HHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHH
Confidence 4689999999999999999988762 2223457899877766643 233443321 11234555555555
Q ss_pred HHHhcCCcEEEEEecC
Q 038454 205 GKLKAKKKFVLILDDI 220 (359)
Q Consensus 205 ~~l~~~k~~LlVlDdv 220 (359)
..++.+.--++|+|.+
T Consensus 127 ~li~s~~~~lIVIDSv 142 (325)
T cd00983 127 SLVRSGAVDLIVVDSV 142 (325)
T ss_pred HHHhccCCCEEEEcch
Confidence 5555546779999998
No 167
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.40 E-value=0.006 Score=60.51 Aligned_cols=46 Identities=24% Similarity=0.387 Sum_probs=37.4
Q ss_pred cccccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 106 TTTLVGENTKKIVKKVWEDLMGDKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
-..++|.+. .+..+...+......-+.|+|.+|+|||++|+.+++.
T Consensus 64 f~~iiGqs~--~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 64 FDEIIGQEE--GIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred HHHeeCcHH--HHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 356899876 7777777776666667889999999999999999764
No 168
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.37 E-value=0.00076 Score=58.87 Aligned_cols=85 Identities=19% Similarity=0.111 Sum_probs=48.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHHH----hcCC--CCCCccHH---HHH
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAMA----LKLS--LTEDEDKV---SRA 200 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~----l~~~--~~~~~~~~---~~~ 200 (359)
-.++.|+|.+|+||||+|.+++... ...-..++|++....+. +-+++++.. +... .....+.. ...
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~---~~~g~~v~yi~~e~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVET---AGQGKKVAYIDTEGLSS--ERFRQIAGDRPERAASSIIVFEPMDFNEQGRAI 93 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH---HhcCCeEEEEECCCCCH--HHHHHHHhHChHhhhcCEEEEeCCCHHHHHHHH
Confidence 4789999999999999999998772 12223477887655443 223333322 1100 00111222 223
Q ss_pred HHHHHHHhcCCcEEEEEecC
Q 038454 201 RRLLGKLKAKKKFVLILDDI 220 (359)
Q Consensus 201 ~~l~~~l~~~k~~LlVlDdv 220 (359)
..+...+.. +.-++|+|.+
T Consensus 94 ~~~~~~~~~-~~~lvvIDsi 112 (218)
T cd01394 94 QETETFADE-KVDLVVVDSA 112 (218)
T ss_pred HHHHHHHhc-CCcEEEEech
Confidence 344444444 4668999987
No 169
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.36 E-value=0.006 Score=63.15 Aligned_cols=24 Identities=21% Similarity=0.378 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
++-|.++|++|+|||+||+.+++.
T Consensus 487 ~~giLL~GppGtGKT~lakalA~e 510 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKAVATE 510 (733)
T ss_pred CceEEEECCCCCCHHHHHHHHHHh
Confidence 456899999999999999999998
No 170
>PRK09354 recA recombinase A; Provisional
Probab=97.36 E-value=0.0006 Score=63.23 Aligned_cols=83 Identities=13% Similarity=0.194 Sum_probs=55.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHHHhcCCC-----CCCccHHHHHHHHH
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAMALKLSL-----TEDEDKVSRARRLL 204 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~ 204 (359)
-+++-|+|++|+||||||.+++... ...-..++|++.-..++.. .+++++.+. ....+.++....+.
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~---~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~~ 131 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEA---QKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIAD 131 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 4689999999999999999988762 2223458899887776653 344444321 11234555555555
Q ss_pred HHHhcCCcEEEEEecC
Q 038454 205 GKLKAKKKFVLILDDI 220 (359)
Q Consensus 205 ~~l~~~k~~LlVlDdv 220 (359)
..++....-++|+|.+
T Consensus 132 ~li~s~~~~lIVIDSv 147 (349)
T PRK09354 132 TLVRSGAVDLIVVDSV 147 (349)
T ss_pred HHhhcCCCCEEEEeCh
Confidence 5555556779999998
No 171
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.36 E-value=0.016 Score=60.05 Aligned_cols=46 Identities=24% Similarity=0.242 Sum_probs=36.0
Q ss_pred cccccccchHHHHHHHHHHhcC------CCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 106 TTTLVGENTKKIVKKVWEDLMG------DKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l~~------~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
....+|.+. .++.++.++.. ....++.++|++|+||||+|+.++..
T Consensus 321 ~~~~~g~~~--vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~ 372 (784)
T PRK10787 321 DTDHYGLER--VKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKA 372 (784)
T ss_pred hhhccCHHH--HHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 456788755 77777776642 24568999999999999999999987
No 172
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.35 E-value=0.0014 Score=53.74 Aligned_cols=40 Identities=23% Similarity=0.373 Sum_probs=29.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcC
Q 038454 132 KIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLD 174 (359)
Q Consensus 132 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~ 174 (359)
++.|+|.+|+||||++..++... ...-..++|++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~---~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI---ATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH---HhcCCEEEEEECCcchH
Confidence 47899999999999999998872 22234577887765543
No 173
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.34 E-value=0.0031 Score=57.25 Aligned_cols=145 Identities=21% Similarity=0.231 Sum_probs=89.1
Q ss_pred cccccccchHHHHHHHHHHhc----CCCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCH-HHHHH
Q 038454 106 TTTLVGENTKKIVKKVWEDLM----GDKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDL-VKLQA 180 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~-~~~~~ 180 (359)
-.+++|-.. +-..+-.|+. .++..-+.|+|+.|.|||+|......+.++..++| +-|........ .-.++
T Consensus 23 ~~~l~g~~~--~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~---l~v~Lng~~~~dk~al~ 97 (408)
T KOG2228|consen 23 HINLFGVQD--EQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENF---LLVRLNGELQTDKIALK 97 (408)
T ss_pred CcceeehHH--HHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeE---EEEEECccchhhHHHHH
Confidence 456888755 4444444443 35667789999999999999887776633344444 33444433222 23455
Q ss_pred HHHHHhcCC----CCCCccHHHHHHHHHHHHhc-----CCcEEEEEecC-----------------------CCC-eEEE
Q 038454 181 EIAMALKLS----LTEDEDKVSRARRLLGKLKA-----KKKFVLILDDI-----------------------DNH-TFCW 227 (359)
Q Consensus 181 ~i~~~l~~~----~~~~~~~~~~~~~l~~~l~~-----~k~~LlVlDdv-----------------------~~g-~ilv 227 (359)
.|.+|+... .....+..+....+...|.. +.++++|+|.+ .|- -|-+
T Consensus 98 ~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~ 177 (408)
T KOG2228|consen 98 GITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGV 177 (408)
T ss_pred HHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEe
Confidence 566655432 22223444455566666654 35688899888 344 5567
Q ss_pred eec-------------cccee-eeecCCCChHHHHHHHHHhh
Q 038454 228 GLR-------------SMGCE-EVRVPPLSKEEALNLFLDKV 255 (359)
Q Consensus 228 Ttr-------------~~~~~-~~~l~~L~~~ea~~lf~~~~ 255 (359)
||| +.... .+-+++++.++-..++++..
T Consensus 178 Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 178 TTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred eccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 888 22222 46677888899999988876
No 174
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.33 E-value=0.019 Score=53.00 Aligned_cols=151 Identities=10% Similarity=0.088 Sum_probs=82.1
Q ss_pred HHHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHcCcccccCCC-cc-----EEEEEeCCCcCHHHHHHHHHHHhcCC
Q 038454 117 IVKKVWEDLMGDK-VTKIGVWGMGGFGKTAIMRHINNRPQEETNEF-SD-----VIWVTVSQPLDLVKLQAEIAMALKLS 189 (359)
Q Consensus 117 ~~~~l~~~l~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F-~~-----~~wv~~~~~~~~~~~~~~i~~~l~~~ 189 (359)
....+...+..++ ...+.++|+.|+||+++|..+++.+.=..... .| +-++..+..+|+..+ ...
T Consensus 11 ~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i--------~p~ 82 (319)
T PRK06090 11 VWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVI--------KPE 82 (319)
T ss_pred HHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEE--------ecC
Confidence 4456666666665 45799999999999999999877631000000 00 000000111110000 000
Q ss_pred C-CCCccHHHHHHHHHHHHhc----CCcEEEEEecC------------------CCC-eEEE-eec--------ccceee
Q 038454 190 L-TEDEDKVSRARRLLGKLKA----KKKFVLILDDI------------------DNH-TFCW-GLR--------SMGCEE 236 (359)
Q Consensus 190 ~-~~~~~~~~~~~~l~~~l~~----~k~~LlVlDdv------------------~~g-~ilv-Ttr--------~~~~~~ 236 (359)
. ...... +.++.+.+.+.. +++-++|+|++ .++ .+|+ |++ ...|..
T Consensus 83 ~~~~~I~v-dqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~ 161 (319)
T PRK06090 83 KEGKSITV-EQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQ 161 (319)
T ss_pred cCCCcCCH-HHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccee
Confidence 0 001111 222333333321 24567888888 333 4444 444 445778
Q ss_pred eecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHH
Q 038454 237 VRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTV 287 (359)
Q Consensus 237 ~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 287 (359)
+.+.+++.+++.+.+.... . + .+..++..++|.|+....+
T Consensus 162 ~~~~~~~~~~~~~~L~~~~----~--~-----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 162 WVVTPPSTAQAMQWLKGQG----I--T-----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred EeCCCCCHHHHHHHHHHcC----C--c-----hHHHHHHHcCCCHHHHHHH
Confidence 9999999999999886531 1 1 2356789999999977554
No 175
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.33 E-value=0.004 Score=65.22 Aligned_cols=46 Identities=22% Similarity=0.343 Sum_probs=34.0
Q ss_pred cccccccchHHHHHHHHHHhc-------CC--CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 106 TTTLVGENTKKIVKKVWEDLM-------GD--KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l~-------~~--~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
...++|.+. .+..+...+. +. ...++.++|++|+|||+||+.+++.
T Consensus 567 ~~~viGQ~~--ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~ 621 (857)
T PRK10865 567 HHRVIGQNE--AVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANF 621 (857)
T ss_pred CCeEeCCHH--HHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 356889876 6555555553 11 1247899999999999999999976
No 176
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.32 E-value=0.0061 Score=58.20 Aligned_cols=108 Identities=20% Similarity=0.255 Sum_probs=64.6
Q ss_pred HHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCc-CHHHHHHHHHHHhcCCCCCCcc
Q 038454 117 IVKKVWEDLMGDKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPL-DLVKLQAEIAMALKLSLTEDED 195 (359)
Q Consensus 117 ~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~ 195 (359)
-..++...+..... ++.|.|+-++||||+++.+.... .+. .++++..+.. +-.++ .
T Consensus 25 ~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~---~~~---~iy~~~~d~~~~~~~l-~--------------- 81 (398)
T COG1373 25 LLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGL---LEE---IIYINFDDLRLDRIEL-L--------------- 81 (398)
T ss_pred hhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhC---Ccc---eEEEEecchhcchhhH-H---------------
Confidence 44555555555544 99999999999999997777762 222 5555443321 11111 1
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEecC--------------CCC--eEEEeec-------------ccceeeeecCCCChHH
Q 038454 196 KVSRARRLLGKLKAKKKFVLILDDI--------------DNH--TFCWGLR-------------SMGCEEVRVPPLSKEE 246 (359)
Q Consensus 196 ~~~~~~~l~~~l~~~k~~LlVlDdv--------------~~g--~ilvTtr-------------~~~~~~~~l~~L~~~e 246 (359)
+....+...-.. ++.+++||.| +.| ++++|+. .-....+.+.|||..|
T Consensus 82 --d~~~~~~~~~~~-~~~yifLDEIq~v~~W~~~lk~l~d~~~~~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~E 158 (398)
T COG1373 82 --DLLRAYIELKER-EKSYIFLDEIQNVPDWERALKYLYDRGNLDVLITGSSSSLLSKEISESLAGRGKDLELYPLSFRE 158 (398)
T ss_pred --HHHHHHHHhhcc-CCceEEEecccCchhHHHHHHHHHccccceEEEECCchhhhccchhhhcCCCceeEEECCCCHHH
Confidence 111122222222 6689999999 455 5777766 1112468999999998
Q ss_pred HHHH
Q 038454 247 ALNL 250 (359)
Q Consensus 247 a~~l 250 (359)
-..+
T Consensus 159 fl~~ 162 (398)
T COG1373 159 FLKL 162 (398)
T ss_pred HHhh
Confidence 8653
No 177
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=97.32 E-value=0.0024 Score=57.20 Aligned_cols=90 Identities=20% Similarity=0.253 Sum_probs=56.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccc--cCCC-ccEEEEEeCCCcCHHHHHHHHHHHhcCCC------------CCCc
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEE--TNEF-SDVIWVTVSQPLDLVKLQAEIAMALKLSL------------TEDE 194 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~~F-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------------~~~~ 194 (359)
-.+.=|+|.+|+|||.|+.+++-...-. .+.. ..++|++-...|+..++. +|++..+.+. ....
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~~ 116 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDLE 116 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSHH
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCHH
Confidence 3689999999999999999886441111 1222 358899988888888775 4565543311 1112
Q ss_pred cHHHHHHHHHHHHhcCCcEEEEEecC
Q 038454 195 DKVSRARRLLGKLKAKKKFVLILDDI 220 (359)
Q Consensus 195 ~~~~~~~~l~~~l~~~k~~LlVlDdv 220 (359)
+....+..+...+...+--|||+|.+
T Consensus 117 ~l~~~L~~l~~~l~~~~ikLIVIDSI 142 (256)
T PF08423_consen 117 ELLELLEQLPKLLSESKIKLIVIDSI 142 (256)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETS
T ss_pred HHHHHHHHHHhhccccceEEEEecch
Confidence 23334444445554546669999998
No 178
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.005 Score=53.66 Aligned_cols=148 Identities=18% Similarity=0.217 Sum_probs=76.9
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCH-------HHHHHHH---HHHh-----------
Q 038454 128 DKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDL-------VKLQAEI---AMAL----------- 186 (359)
Q Consensus 128 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~-------~~~~~~i---~~~l----------- 186 (359)
.+++=+.++|++|.|||-||+.++++ . ++-|+.+|...-+ ..+.+++ ++..
T Consensus 179 aQPKGvlLygppgtGktLlaraVahh---t-----~c~firvsgselvqk~igegsrmvrelfvmarehapsiifmdeid 250 (404)
T KOG0728|consen 179 AQPKGVLLYGPPGTGKTLLARAVAHH---T-----DCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEID 250 (404)
T ss_pred CCCcceEEecCCCCchhHHHHHHHhh---c-----ceEEEEechHHHHHHHhhhhHHHHHHHHHHHHhcCCceEeeeccc
Confidence 35677999999999999999999998 1 2445666543111 1111111 1110
Q ss_pred --cCCC--CCCccHHHHHHHHHHHHhcCCcEEEEEecC--CCC-eEEEeec----------ccce--eeeecCCCChHHH
Q 038454 187 --KLSL--TEDEDKVSRARRLLGKLKAKKKFVLILDDI--DNH-TFCWGLR----------SMGC--EEVRVPPLSKEEA 247 (359)
Q Consensus 187 --~~~~--~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv--~~g-~ilvTtr----------~~~~--~~~~l~~L~~~ea 247 (359)
+..- .......+..+...+.|.. ||++ .+. +||..|. +.+. ..++.++-+.+.-
T Consensus 251 sigs~r~e~~~ggdsevqrtmlellnq-------ldgfeatknikvimatnridild~allrpgridrkiefp~p~e~ar 323 (404)
T KOG0728|consen 251 SIGSSRVESGSGGDSEVQRTMLELLNQ-------LDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEAR 323 (404)
T ss_pred ccccccccCCCCccHHHHHHHHHHHHh-------ccccccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHH
Confidence 1100 0011122333444444443 4555 455 7777665 1222 3578888887777
Q ss_pred HHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHHHHh
Q 038454 248 LNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTVVGC 290 (359)
Q Consensus 248 ~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~ 290 (359)
.+++.-+...-+....-++..+++++.-..|.--.+...=|+.
T Consensus 324 ~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm 366 (404)
T KOG0728|consen 324 LDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGM 366 (404)
T ss_pred HHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhH
Confidence 7777655433222233445666666554444444444444444
No 179
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.30 E-value=0.015 Score=54.08 Aligned_cols=152 Identities=15% Similarity=0.151 Sum_probs=83.3
Q ss_pred HHHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHcCcc--cccCCCcc-----EEEEEeCCCcCHHHHHHHHHHHhcC
Q 038454 117 IVKKVWEDLMGDK-VTKIGVWGMGGFGKTAIMRHINNRPQ--EETNEFSD-----VIWVTVSQPLDLVKLQAEIAMALKL 188 (359)
Q Consensus 117 ~~~~l~~~l~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~--~~~~~F~~-----~~wv~~~~~~~~~~~~~~i~~~l~~ 188 (359)
.-+.+...+..++ ...+.++|+.|+||+++|..++..+. .....-.| +-++..+..+|+..+ ..
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i--------~p 81 (334)
T PRK07993 10 DYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTL--------TP 81 (334)
T ss_pred HHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEE--------ec
Confidence 4556777776654 56788999999999999999877631 00000000 001111111111100 00
Q ss_pred CCCCCccHHHHHHHHHHHHhc----CCcEEEEEecC------------------CCC-eEEEeec---------ccceee
Q 038454 189 SLTEDEDKVSRARRLLGKLKA----KKKFVLILDDI------------------DNH-TFCWGLR---------SMGCEE 236 (359)
Q Consensus 189 ~~~~~~~~~~~~~~l~~~l~~----~k~~LlVlDdv------------------~~g-~ilvTtr---------~~~~~~ 236 (359)
......-..+.++.+.+.+.. +++-++|+|++ ..+ -+|++|. ...|+.
T Consensus 82 ~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~ 161 (334)
T PRK07993 82 EKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRL 161 (334)
T ss_pred ccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcccc
Confidence 000000112223334333321 36668888988 233 4444444 345678
Q ss_pred eecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHH
Q 038454 237 VRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAI 284 (359)
Q Consensus 237 ~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai 284 (359)
+.+.+++.+++.+.+.... + ...+.+..++..++|.|...
T Consensus 162 ~~~~~~~~~~~~~~L~~~~-~-------~~~~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 162 HYLAPPPEQYALTWLSREV-T-------MSQDALLAALRLSAGAPGAA 201 (334)
T ss_pred ccCCCCCHHHHHHHHHHcc-C-------CCHHHHHHHHHHcCCCHHHH
Confidence 9999999999998886542 1 11244677899999999744
No 180
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.30 E-value=0.0024 Score=56.53 Aligned_cols=86 Identities=13% Similarity=0.142 Sum_probs=53.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHHHhcCCC------------------
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAMALKLSL------------------ 190 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------------------ 190 (359)
.-.++.|.|.+|+|||+||.++.... . ..-..++||+... +..++.+.+. +++.+.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~--~-~~ge~~lyvs~ee--~~~~i~~~~~-~~g~~~~~~~~~g~l~~~d~~~~~ 93 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNG--L-QMGEPGIYVALEE--HPVQVRRNMA-QFGWDVRKYEEEGKFAIVDAFTGG 93 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH--H-HcCCcEEEEEeeC--CHHHHHHHHH-HhCCCHHHHhhcCCEEEEeccccc
Confidence 34789999999999999999976651 1 2234588888765 4445544432 222110
Q ss_pred ------------CCCccHHHHHHHHHHHHhcCCcEEEEEecC
Q 038454 191 ------------TEDEDKVSRARRLLGKLKAKKKFVLILDDI 220 (359)
Q Consensus 191 ------------~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv 220 (359)
....+.......+.+.+...+.-++|+|.+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSl 135 (237)
T TIGR03877 94 IGEAAEREKYVVKDPTDVRELIDVLRQAIRDINAKRVVIDSV 135 (237)
T ss_pred cccccccccccccCcccHHHHHHHHHHHHHHhCCCEEEEcCh
Confidence 012355566666666665434457999997
No 181
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.014 Score=56.28 Aligned_cols=121 Identities=17% Similarity=0.251 Sum_probs=72.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHh
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAMALKLSLTEDEDKVSRARRLLGKLK 208 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 208 (359)
+...+.+.|++|+|||+||..++.. ..|+.+--++-.. + -..++......+.+.+.
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~-----S~FPFvKiiSpe~------m-------------iG~sEsaKc~~i~k~F~ 592 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALS-----SDFPFVKIISPED------M-------------IGLSESAKCAHIKKIFE 592 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhh-----cCCCeEEEeChHH------c-------------cCccHHHHHHHHHHHHH
Confidence 4567889999999999999999977 5676433332111 1 01222333333333332
Q ss_pred c---CCcEEEEEecC-----------------------------CCC-eEEE--eec------ccc---e--eeeecCCC
Q 038454 209 A---KKKFVLILDDI-----------------------------DNH-TFCW--GLR------SMG---C--EEVRVPPL 242 (359)
Q Consensus 209 ~---~k~~LlVlDdv-----------------------------~~g-~ilv--Ttr------~~~---~--~~~~l~~L 242 (359)
+ ..-..||+||+ ..| |.+| ||. .|+ | ..|.++.+
T Consensus 593 DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl 672 (744)
T KOG0741|consen 593 DAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNL 672 (744)
T ss_pred HhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCcc
Confidence 2 15678999998 455 5443 333 222 2 46899999
Q ss_pred Ch-HHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHc
Q 038454 243 SK-EEALNLFLDKVGRNILHVPTLNEEIINSVVEEC 277 (359)
Q Consensus 243 ~~-~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c 277 (359)
+. ++..+.++..-.- .+.....++++...+|
T Consensus 673 ~~~~~~~~vl~~~n~f----sd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 673 TTGEQLLEVLEELNIF----SDDEVRAIAEQLLSKK 704 (744)
T ss_pred CchHHHHHHHHHccCC----CcchhHHHHHHHhccc
Confidence 87 7777777664311 2334556666666666
No 182
>PHA02244 ATPase-like protein
Probab=97.28 E-value=0.0039 Score=58.12 Aligned_cols=46 Identities=20% Similarity=0.183 Sum_probs=33.8
Q ss_pred cccccccch--HHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 106 TTTLVGENT--KKIVKKVWEDLMGDKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 106 ~~~~vGr~~--~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
+..++|... ......+..++..+. .|.|+|++|+|||+||+++++.
T Consensus 95 d~~~ig~sp~~~~~~~ri~r~l~~~~--PVLL~GppGtGKTtLA~aLA~~ 142 (383)
T PHA02244 95 DTTKIASNPTFHYETADIAKIVNANI--PVFLKGGAGSGKNHIAEQIAEA 142 (383)
T ss_pred CCcccCCCHHHHHHHHHHHHHHhcCC--CEEEECCCCCCHHHHHHHHHHH
Confidence 456667655 334556666666553 4788999999999999999987
No 183
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.26 E-value=0.014 Score=56.09 Aligned_cols=86 Identities=19% Similarity=0.169 Sum_probs=47.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCc-CHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhc
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPL-DLVKLQAEIAMALKLSLTEDEDKVSRARRLLGKLKA 209 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 209 (359)
+++.++|++|+||||++..++..+. ....-..+..|+..... ...+.+......++.+.....+..+....+.+ +.
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~-~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~-~~- 298 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYA-LLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQ-LR- 298 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHH-HhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHH-hC-
Confidence 6899999999999999998877631 01222346666654321 12233444444455543333334444433332 22
Q ss_pred CCcEEEEEecC
Q 038454 210 KKKFVLILDDI 220 (359)
Q Consensus 210 ~k~~LlVlDdv 220 (359)
..-++++|..
T Consensus 299 -~~DlVlIDt~ 308 (424)
T PRK05703 299 -DCDVILIDTA 308 (424)
T ss_pred -CCCEEEEeCC
Confidence 3467788875
No 184
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.26 E-value=0.0017 Score=58.10 Aligned_cols=80 Identities=29% Similarity=0.357 Sum_probs=50.0
Q ss_pred HHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHH
Q 038454 120 KVWEDLMGDKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAMALKLSLTEDEDKVSR 199 (359)
Q Consensus 120 ~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 199 (359)
.+..++. +..-+.++|.+|+|||.||.++.+.+ .+..+. +.+++ ..+++..+....... ..
T Consensus 97 ~~~~~~~--~~~nl~l~G~~G~GKThLa~Ai~~~l--~~~g~s-v~f~~------~~el~~~Lk~~~~~~--------~~ 157 (254)
T COG1484 97 SLVEFFE--RGENLVLLGPPGVGKTHLAIAIGNEL--LKAGIS-VLFIT------APDLLSKLKAAFDEG--------RL 157 (254)
T ss_pred HHHHHhc--cCCcEEEECCCCCcHHHHHHHHHHHH--HHcCCe-EEEEE------HHHHHHHHHHHHhcC--------ch
Confidence 3444555 56779999999999999999999994 233343 45553 445555555544431 11
Q ss_pred HHHHHHHHhcCCcEEEEEecC
Q 038454 200 ARRLLGKLKAKKKFVLILDDI 220 (359)
Q Consensus 200 ~~~l~~~l~~~k~~LlVlDdv 220 (359)
...+.+.+. +-=||||||+
T Consensus 158 ~~~l~~~l~--~~dlLIiDDl 176 (254)
T COG1484 158 EEKLLRELK--KVDLLIIDDI 176 (254)
T ss_pred HHHHHHHhh--cCCEEEEecc
Confidence 223333332 4559999998
No 185
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.25 E-value=0.0021 Score=61.73 Aligned_cols=57 Identities=18% Similarity=0.167 Sum_probs=36.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCC-CcCHHHHHHHHHHHhcC
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQ-PLDLVKLQAEIAMALKL 188 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~ 188 (359)
.+.+|.++|.+|+||||+|..++..+. ...+ .+..|+... .+...+.+..+..+++.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~--~~g~-kV~lV~~D~~R~aa~eQL~~la~~~gv 151 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFK--KKGL-KVGLVAADTYRPAAYDQLKQLAEKIGV 151 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH--HcCC-eEEEecCCCCCHHHHHHHHHHHHHcCC
Confidence 467999999999999999999998742 2233 233344322 12234455556666554
No 186
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.24 E-value=0.013 Score=60.55 Aligned_cols=45 Identities=16% Similarity=0.316 Sum_probs=33.2
Q ss_pred ccccccchHHHHHHHHHHhcC-------C--CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 107 TTLVGENTKKIVKKVWEDLMG-------D--KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 107 ~~~vGr~~~~~~~~l~~~l~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..++|.+. .++.+...+.. . ...++.++|++|+|||+||+.++..
T Consensus 454 ~~v~GQ~~--ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~ 507 (731)
T TIGR02639 454 AKIFGQDE--AIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEA 507 (731)
T ss_pred cceeCcHH--HHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHH
Confidence 45778765 56666555531 1 2346889999999999999999987
No 187
>PRK04296 thymidine kinase; Provisional
Probab=97.22 E-value=0.00052 Score=58.62 Aligned_cols=83 Identities=12% Similarity=0.073 Sum_probs=45.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHHHhcCCCCC--CccHHHHHHHHHHHHh
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAMALKLSLTE--DEDKVSRARRLLGKLK 208 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~l~ 208 (359)
.++.|+|..|.||||+|..++.+. . ... ..++.+. ..++.......++..++..... .....+....+.+ .
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~-~-~~g-~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~--~ 75 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNY-E-ERG-MKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE--E 75 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHH-H-HcC-CeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh--h
Confidence 478899999999999999998883 1 122 2233332 1112222233445555543221 1233444444444 3
Q ss_pred cCCcEEEEEecC
Q 038454 209 AKKKFVLILDDI 220 (359)
Q Consensus 209 ~~k~~LlVlDdv 220 (359)
.++.-+||+|.+
T Consensus 76 ~~~~dvviIDEa 87 (190)
T PRK04296 76 GEKIDCVLIDEA 87 (190)
T ss_pred CCCCCEEEEEcc
Confidence 324458999997
No 188
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.22 E-value=0.0038 Score=60.95 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=22.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.++-|.++|++|+|||.+|+.+++.
T Consensus 258 ~pkGILL~GPpGTGKTllAkaiA~e 282 (489)
T CHL00195 258 TPRGLLLVGIQGTGKSLTAKAIAND 282 (489)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHH
Confidence 3567999999999999999999998
No 189
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.19 E-value=0.0061 Score=56.41 Aligned_cols=44 Identities=20% Similarity=0.295 Sum_probs=33.4
Q ss_pred ccccchHHHHHHHHHHhc-CCCcc-EEEEEcCCCCcHHHHHHHHHcCc
Q 038454 109 LVGENTKKIVKKVWEDLM-GDKVT-KIGVWGMGGFGKTAIMRHINNRP 154 (359)
Q Consensus 109 ~vGr~~~~~~~~l~~~l~-~~~~~-vi~I~G~gGiGKTtLa~~v~~~~ 154 (359)
++|-+. ....+..+.. .++.+ .+.++|++|+||||+|..+++.+
T Consensus 3 ~~~~~~--~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l 48 (325)
T COG0470 3 LVPWQE--AVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKEL 48 (325)
T ss_pred cccchh--HHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHH
Confidence 445543 6677777776 34344 59999999999999999999873
No 190
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.18 E-value=0.0019 Score=58.68 Aligned_cols=86 Identities=20% Similarity=0.233 Sum_probs=48.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCccccc-CCCccEEEEEeCCC-cCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHH
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEET-NEFSDVIWVTVSQP-LDLVKLQAEIAMALKLSLTEDEDKVSRARRLLGKL 207 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 207 (359)
.++++++|++|+||||++..++..+ ... +.+ .+..|+.... ....+.+......++.+.....+..... ...+.+
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~-~~~~g~~-~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~-~~l~~~ 270 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARF-VLEHGNK-KVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELR-KALDRL 270 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH-HHHcCCC-eEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHH-HHHHHc
Confidence 4699999999999999999998873 122 223 3556665432 1233344444555555443333444433 333333
Q ss_pred hcCCcEEEEEecC
Q 038454 208 KAKKKFVLILDDI 220 (359)
Q Consensus 208 ~~~k~~LlVlDdv 220 (359)
. ..=++++|..
T Consensus 271 ~--~~d~vliDt~ 281 (282)
T TIGR03499 271 R--DKDLILIDTA 281 (282)
T ss_pred c--CCCEEEEeCC
Confidence 3 3457777753
No 191
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.17 E-value=0.0013 Score=58.99 Aligned_cols=88 Identities=18% Similarity=0.269 Sum_probs=54.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCc-cEEEEEeCCCc-CHHHHHHHHHHHhcC-------CCCCCccHH---
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFS-DVIWVTVSQPL-DLVKLQAEIAMALKL-------SLTEDEDKV--- 197 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~-~~~wv~~~~~~-~~~~~~~~i~~~l~~-------~~~~~~~~~--- 197 (359)
-..++|.|.+|+|||||++.+++. ...+|. .++++-+++.. ...++.+.+...=.. ...+.....
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~~---i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 145 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINN---IAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARAR 145 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHHH---HHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 357999999999999999999998 333453 45666676654 455666666543111 111111111
Q ss_pred --HHHHHHHHHHhc--CCcEEEEEecC
Q 038454 198 --SRARRLLGKLKA--KKKFVLILDDI 220 (359)
Q Consensus 198 --~~~~~l~~~l~~--~k~~LlVlDdv 220 (359)
...-.+.++++. ++++|+++||+
T Consensus 146 ~~~~a~~~AEyfr~~~g~~Vl~~~Dsl 172 (274)
T cd01133 146 VALTGLTMAEYFRDEEGQDVLLFIDNI 172 (274)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeCh
Confidence 122334455532 48999999998
No 192
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.16 E-value=0.002 Score=59.39 Aligned_cols=90 Identities=18% Similarity=0.187 Sum_probs=56.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccc--cCC-CccEEEEEeCCCcCHHHHHHHHHHHhcCCCC---------CCccHH
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEE--TNE-FSDVIWVTVSQPLDLVKLQAEIAMALKLSLT---------EDEDKV 197 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~~-F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------~~~~~~ 197 (359)
-.++-|+|.+|+|||+|+.+++-..+.. ... =..++|++....|+..++.+ ++..++.+.. ...+.+
T Consensus 96 G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~d~~~~l~~i~~~~~~~~e 174 (313)
T TIGR02238 96 MSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGVDPDAVLDNILYARAYTSE 174 (313)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCCChHHhcCcEEEecCCCHH
Confidence 4689999999999999999876431101 111 13589999988888887754 5666654321 111233
Q ss_pred HH---HHHHHHHHhcCCcEEEEEecC
Q 038454 198 SR---ARRLLGKLKAKKKFVLILDDI 220 (359)
Q Consensus 198 ~~---~~~l~~~l~~~k~~LlVlDdv 220 (359)
+. +..+...+...+--|||+|.+
T Consensus 175 ~~~~~l~~l~~~i~~~~~~LvVIDSi 200 (313)
T TIGR02238 175 HQMELLDYLAAKFSEEPFRLLIVDSI 200 (313)
T ss_pred HHHHHHHHHHHHhhccCCCEEEEEcc
Confidence 33 334444444435568999997
No 193
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.16 E-value=0.0012 Score=65.49 Aligned_cols=71 Identities=21% Similarity=0.314 Sum_probs=52.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHh
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAMALKLSLTEDEDKVSRARRLLGKLK 208 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 208 (359)
.-++..++|++|+||||||.-++++ ..|. ++=+++|+..+...+-..|...+.... .+.
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkq-----aGYs-VvEINASDeRt~~~v~~kI~~avq~~s---------------~l~ 383 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQ-----AGYS-VVEINASDERTAPMVKEKIENAVQNHS---------------VLD 383 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHh-----cCce-EEEecccccccHHHHHHHHHHHHhhcc---------------ccc
Confidence 3579999999999999999999988 3343 667888888777777666666554321 121
Q ss_pred -cCCcEEEEEecC
Q 038454 209 -AKKKFVLILDDI 220 (359)
Q Consensus 209 -~~k~~LlVlDdv 220 (359)
+.++..||+|.+
T Consensus 384 adsrP~CLViDEI 396 (877)
T KOG1969|consen 384 ADSRPVCLVIDEI 396 (877)
T ss_pred cCCCcceEEEecc
Confidence 137888999998
No 194
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.15 E-value=0.013 Score=61.44 Aligned_cols=46 Identities=15% Similarity=0.257 Sum_probs=34.7
Q ss_pred cccccccchHHHHHHHHHHhc-------CC--CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 106 TTTLVGENTKKIVKKVWEDLM-------GD--KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l~-------~~--~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
...++|.+. .++.+.+.+. ++ ...++.++|++|+|||.||+.++..
T Consensus 565 ~~~v~GQ~~--Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~ 619 (852)
T TIGR03345 565 AERVIGQDH--ALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAEL 619 (852)
T ss_pred cCeEcChHH--HHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 457889876 6666666552 11 2347899999999999999999877
No 195
>PRK04132 replication factor C small subunit; Provisional
Probab=97.15 E-value=0.016 Score=59.93 Aligned_cols=131 Identities=13% Similarity=0.131 Sum_probs=82.6
Q ss_pred Ec--CCCCcHHHHHHHHHcCcccccCCCc-cEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhcCCc
Q 038454 136 WG--MGGFGKTAIMRHINNRPQEETNEFS-DVIWVTVSQPLDLVKLQAEIAMALKLSLTEDEDKVSRARRLLGKLKAKKK 212 (359)
Q Consensus 136 ~G--~gGiGKTtLa~~v~~~~~~~~~~F~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~ 212 (359)
.| |.++||||+|..+++++ ..+.++ .++-++.++..+...+ +.++..+....+ +.+.+.
T Consensus 570 ~G~lPh~lGKTT~A~ala~~l--~g~~~~~~~lElNASd~rgid~I-R~iIk~~a~~~~---------------~~~~~~ 631 (846)
T PRK04132 570 GGNLPTVLHNTTAALALAREL--FGENWRHNFLELNASDERGINVI-REKVKEFARTKP---------------IGGASF 631 (846)
T ss_pred cCCCCCcccHHHHHHHHHHhh--hcccccCeEEEEeCCCcccHHHH-HHHHHHHHhcCC---------------cCCCCC
Confidence 36 77999999999999983 122332 3666777765555433 333333221111 011145
Q ss_pred EEEEEecC-----------------CC-C-eEEEeec---------ccceeeeecCCCChHHHHHHHHHhhcCCCCCCCC
Q 038454 213 FVLILDDI-----------------DN-H-TFCWGLR---------SMGCEEVRVPPLSKEEALNLFLDKVGRNILHVPT 264 (359)
Q Consensus 213 ~LlVlDdv-----------------~~-g-~ilvTtr---------~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~ 264 (359)
-++|+|++ .+ . .+|+++. ...|..+.+.+++.++..+.+...+...+..
T Consensus 632 KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~--- 708 (846)
T PRK04132 632 KIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLE--- 708 (846)
T ss_pred EEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCC---
Confidence 78999999 22 3 6666555 3457789999999999998887765332221
Q ss_pred chHHHHHHHHHHcCCchhHHHHH
Q 038454 265 LNEEIINSVVEECAGLQLAIFTV 287 (359)
Q Consensus 265 ~~~~~~~~i~~~c~g~Plai~~~ 287 (359)
-..+....|++.|+|.+..+..+
T Consensus 709 i~~e~L~~Ia~~s~GDlR~AIn~ 731 (846)
T PRK04132 709 LTEEGLQAILYIAEGDMRRAINI 731 (846)
T ss_pred CCHHHHHHHHHHcCCCHHHHHHH
Confidence 12567889999999988554433
No 196
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.14 E-value=0.018 Score=56.23 Aligned_cols=87 Identities=20% Similarity=0.206 Sum_probs=47.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCC-CcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHh
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQ-PLDLVKLQAEIAMALKLSLTEDEDKVSRARRLLGKLK 208 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 208 (359)
..+|+|+|.+|+||||++..++..+. .......+..++... .....+.+......++.......+...+...+ +.+.
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la-~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL-~~l~ 427 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFA-AQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLL-ERLR 427 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH-HhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHH-HHhc
Confidence 47899999999999999999887631 111123355555422 11223333334444444332222333333333 3333
Q ss_pred cCCcEEEEEecC
Q 038454 209 AKKKFVLILDDI 220 (359)
Q Consensus 209 ~~k~~LlVlDdv 220 (359)
..-+|++|..
T Consensus 428 --~~DLVLIDTa 437 (559)
T PRK12727 428 --DYKLVLIDTA 437 (559)
T ss_pred --cCCEEEecCC
Confidence 3558888887
No 197
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.011 Score=57.87 Aligned_cols=70 Identities=21% Similarity=0.400 Sum_probs=44.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHh
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAMALKLSLTEDEDKVSRARRLLGKLK 208 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 208 (359)
-+.=|.++|++|+|||-||++|+|. ..-.| +++..+ ++ +..- -. ..+..++.+.+.-+
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVANE---ag~NF-----isVKGP----EL----lNkY-----VG-ESErAVR~vFqRAR 601 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVANE---AGANF-----ISVKGP----EL----LNKY-----VG-ESERAVRQVFQRAR 601 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhhh---ccCce-----EeecCH----HH----HHHH-----hh-hHHHHHHHHHHHhh
Confidence 3556899999999999999999998 33444 444432 11 1110 11 22333444444444
Q ss_pred cCCcEEEEEecC
Q 038454 209 AKKKFVLILDDI 220 (359)
Q Consensus 209 ~~k~~LlVlDdv 220 (359)
...+++|.||.+
T Consensus 602 ~saPCVIFFDEi 613 (802)
T KOG0733|consen 602 ASAPCVIFFDEI 613 (802)
T ss_pred cCCCeEEEecch
Confidence 458999999998
No 198
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.11 E-value=0.00067 Score=62.94 Aligned_cols=47 Identities=11% Similarity=0.217 Sum_probs=38.2
Q ss_pred cccccccchHHHHHHHHHHhcC------CCccEEEEEcCCCCcHHHHHHHHHcCc
Q 038454 106 TTTLVGENTKKIVKKVWEDLMG------DKVTKIGVWGMGGFGKTAIMRHINNRP 154 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 154 (359)
...++|.+. .++++++++.. ...+++.++|++|+||||||..+++.+
T Consensus 50 ~~~~~G~~~--~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 50 DHDFFGMEE--AIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred chhccCcHH--HHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 347999866 77888877743 245889999999999999999999884
No 199
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.10 E-value=0.004 Score=55.00 Aligned_cols=86 Identities=15% Similarity=0.171 Sum_probs=53.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHHHhcCCCC-----------------
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAMALKLSLT----------------- 191 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----------------- 191 (359)
.-.++.|+|.+|+|||+|+.++.... ... =..++|++..+. ..++.+.+ .+++....
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~--~~~-g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGA--LKQ-GKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHH--HhC-CCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccc
Confidence 35789999999999999999996651 122 235888888654 44554443 23332110
Q ss_pred ---CCccHHHHHHHHHHHHhcCCcEEEEEecC
Q 038454 192 ---EDEDKVSRARRLLGKLKAKKKFVLILDDI 220 (359)
Q Consensus 192 ---~~~~~~~~~~~l~~~l~~~k~~LlVlDdv 220 (359)
.....+.....+.+.+...+.-++|+|.+
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~ 129 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSL 129 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecH
Confidence 11233456666666665435568999987
No 200
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.024 Score=57.78 Aligned_cols=103 Identities=16% Similarity=0.284 Sum_probs=57.6
Q ss_pred cccccccchHHHHHHHHHHhcC---------CCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHH
Q 038454 106 TTTLVGENTKKIVKKVWEDLMG---------DKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLV 176 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~ 176 (359)
...++|.+. .+..+.+.+.. ....+....|+.|+|||.||++++..+ .+.=+..+-++.|+...-
T Consensus 490 ~~rViGQd~--AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~L---fg~e~aliR~DMSEy~Ek- 563 (786)
T COG0542 490 KKRVIGQDE--AVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEAL---FGDEQALIRIDMSEYMEK- 563 (786)
T ss_pred hcceeChHH--HHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHh---cCCCccceeechHHHHHH-
Confidence 356888876 77777666632 134577889999999999999999873 221133344433332111
Q ss_pred HHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhcCCcE-EEEEecC
Q 038454 177 KLQAEIAMALKLSLTEDEDKVSRARRLLGKLKAKKKF-VLILDDI 220 (359)
Q Consensus 177 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~-LlVlDdv 220 (359)
+.+.+-+|.+ +. .-.-+.--.|-+..+. ++| +|.||++
T Consensus 564 ---HsVSrLIGaP-PG-YVGyeeGG~LTEaVRr-~PySViLlDEI 602 (786)
T COG0542 564 ---HSVSRLIGAP-PG-YVGYEEGGQLTEAVRR-KPYSVILLDEI 602 (786)
T ss_pred ---HHHHHHhCCC-CC-CceeccccchhHhhhc-CCCeEEEechh
Confidence 1122223332 21 1111113345555666 656 8888999
No 201
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.07 E-value=0.0024 Score=60.00 Aligned_cols=89 Identities=16% Similarity=0.217 Sum_probs=49.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCC-cCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHH
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQP-LDLVKLQAEIAMALKLSLTEDEDKVSRARRLLGKL 207 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 207 (359)
++++|+++|++|+||||++..++..+ ....+ .+..++.... ....+-+......++.+.....+.......+...-
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L--~~~Gk-kVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk 316 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQF--HGKKK-TVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFK 316 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHH--HHcCC-cEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHH
Confidence 45799999999999999999998873 22222 2445554322 22333344444455544332334444444333322
Q ss_pred hcCCcEEEEEecC
Q 038454 208 KAKKKFVLILDDI 220 (359)
Q Consensus 208 ~~~k~~LlVlDdv 220 (359)
...+.=++++|-.
T Consensus 317 ~~~~~DvVLIDTa 329 (436)
T PRK11889 317 EEARVDYILIDTA 329 (436)
T ss_pred hccCCCEEEEeCc
Confidence 2112346677765
No 202
>PRK06696 uridine kinase; Validated
Probab=97.07 E-value=0.00088 Score=58.76 Aligned_cols=38 Identities=16% Similarity=0.332 Sum_probs=30.6
Q ss_pred HHHHHHHHhc---CCCccEEEEEcCCCCcHHHHHHHHHcCc
Q 038454 117 IVKKVWEDLM---GDKVTKIGVWGMGGFGKTAIMRHINNRP 154 (359)
Q Consensus 117 ~~~~l~~~l~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 154 (359)
.+++|.+.+. .+++.+|+|.|.+|+||||||+.++..+
T Consensus 6 ~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l 46 (223)
T PRK06696 6 LIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEI 46 (223)
T ss_pred HHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 4555665553 4567899999999999999999999873
No 203
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.06 E-value=0.0027 Score=53.23 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCc
Q 038454 132 KIGVWGMGGFGKTAIMRHINNRP 154 (359)
Q Consensus 132 vi~I~G~gGiGKTtLa~~v~~~~ 154 (359)
++.++|++|+||||++..++..+
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~ 24 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999998873
No 204
>PRK06547 hypothetical protein; Provisional
Probab=97.04 E-value=0.00089 Score=56.12 Aligned_cols=34 Identities=24% Similarity=0.322 Sum_probs=28.4
Q ss_pred HHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 120 KVWEDLMGDKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 120 ~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.+...+..+...+|+|.|++|+||||+|+.+.+.
T Consensus 5 ~~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 5 LIAARLCGGGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred HHHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4444555677889999999999999999999876
No 205
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.02 E-value=0.043 Score=51.16 Aligned_cols=66 Identities=18% Similarity=0.232 Sum_probs=44.1
Q ss_pred CcEEEEEecC------------------CCC-eE-EEeec--------ccceeeeecCCCChHHHHHHHHHhhcCCCCCC
Q 038454 211 KKFVLILDDI------------------DNH-TF-CWGLR--------SMGCEEVRVPPLSKEEALNLFLDKVGRNILHV 262 (359)
Q Consensus 211 k~~LlVlDdv------------------~~g-~i-lvTtr--------~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~ 262 (359)
++-++|+|++ .++ .+ ++|++ ...|..+.+.+++.++..+.+...- .
T Consensus 132 ~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~------~ 205 (342)
T PRK06964 132 GARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG------V 205 (342)
T ss_pred CceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC------C
Confidence 5568888998 344 44 44554 3356789999999999999887641 1
Q ss_pred CCchHHHHHHHHHHcCCchhHHHHH
Q 038454 263 PTLNEEIINSVVEECAGLQLAIFTV 287 (359)
Q Consensus 263 ~~~~~~~~~~i~~~c~g~Plai~~~ 287 (359)
++ ...++..++|.|+....+
T Consensus 206 ~~-----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 AD-----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred Ch-----HHHHHHHcCCCHHHHHHH
Confidence 11 223577889999755433
No 206
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.019 Score=56.61 Aligned_cols=46 Identities=20% Similarity=0.286 Sum_probs=32.8
Q ss_pred cccccch-HHHHHHHHHHhcC----------CCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 108 TLVGENT-KKIVKKVWEDLMG----------DKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 108 ~~vGr~~-~~~~~~l~~~l~~----------~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.+-|-+. +.++++.+.|-.. ..++=|..+|++|+|||++|+++++.
T Consensus 435 dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne 491 (693)
T KOG0730|consen 435 DIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANE 491 (693)
T ss_pred hccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhh
Confidence 4444544 4445544444332 35678999999999999999999998
No 207
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.00 E-value=0.0016 Score=54.43 Aligned_cols=81 Identities=20% Similarity=0.196 Sum_probs=45.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhcC-
Q 038454 132 KIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAMALKLSLTEDEDKVSRARRLLGKLKAK- 210 (359)
Q Consensus 132 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~- 210 (359)
++.|.|.+|+|||++|.++... ....++++.-...++.+ +...|...-... +......+....+.+.+...
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~------~~~~~~y~at~~~~d~e-m~~rI~~H~~~R-~~~w~t~E~~~~l~~~l~~~~ 72 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAE------LGGPVTYIATAEAFDDE-MAERIARHRKRR-PAHWRTIETPRDLVSALKELD 72 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHh------cCCCeEEEEccCcCCHH-HHHHHHHHHHhC-CCCceEeecHHHHHHHHHhcC
Confidence 3689999999999999998765 11246677666666543 333333322111 11222223333444444321
Q ss_pred CcEEEEEecC
Q 038454 211 KKFVLILDDI 220 (359)
Q Consensus 211 k~~LlVlDdv 220 (359)
+.-.+++|.+
T Consensus 73 ~~~~VLIDcl 82 (169)
T cd00544 73 PGDVVLIDCL 82 (169)
T ss_pred CCCEEEEEcH
Confidence 2337888887
No 208
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.99 E-value=0.0053 Score=56.88 Aligned_cols=89 Identities=17% Similarity=0.251 Sum_probs=55.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCC----CccEEEEEeCCCcCHHHHHHHHHHHhcCCCC------------CC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNE----FSDVIWVTVSQPLDLVKLQAEIAMALKLSLT------------ED 193 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~----F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------------~~ 193 (359)
-.++-|+|.+|+|||+++.+++... ..... =..++||+....++..++.+ ++..++.... ..
T Consensus 102 g~vtei~G~~GsGKT~l~~~~~~~~-~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g~~~~~~l~~i~~~~~~~~ 179 (317)
T PRK04301 102 QSITEFYGEFGSGKTQICHQLAVNV-QLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALGLDPDEVLDNIHVARAYNS 179 (317)
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHh-ccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcCCChHhhhccEEEEeCCCH
Confidence 4789999999999999999998662 11111 13689999988888777644 3444443211 01
Q ss_pred ccHHHHHHHHHHHHhc-CCcEEEEEecC
Q 038454 194 EDKVSRARRLLGKLKA-KKKFVLILDDI 220 (359)
Q Consensus 194 ~~~~~~~~~l~~~l~~-~k~~LlVlDdv 220 (359)
.........+...+.. .+--|||+|.+
T Consensus 180 ~~~~~~~~~l~~~i~~~~~~~lvVIDSi 207 (317)
T PRK04301 180 DHQMLLAEKAEELIKEGENIKLVIVDSL 207 (317)
T ss_pred HHHHHHHHHHHHHHhccCceeEEEEECc
Confidence 1112233444444443 24459999997
No 209
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.99 E-value=0.01 Score=61.48 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=22.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.+-|.++|++|+|||+||+.+++.
T Consensus 212 ~~giLL~GppGtGKT~laraia~~ 235 (733)
T TIGR01243 212 PKGVLLYGPPGTGKTLLAKAVANE 235 (733)
T ss_pred CceEEEECCCCCChHHHHHHHHHH
Confidence 467899999999999999999987
No 210
>PTZ00494 tuzin-like protein; Provisional
Probab=96.98 E-value=0.37 Score=46.11 Aligned_cols=82 Identities=15% Similarity=0.118 Sum_probs=60.5
Q ss_pred cccCCcccccccch-HHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHH
Q 038454 101 GLILPTTTLVGENT-KKIVKKVWEDLMGDKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQ 179 (359)
Q Consensus 101 ~~~~~~~~~vGr~~-~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 179 (359)
..+.....+|.|+. +.-+.+++..+....++++.+.|.-|.||++|.+....+ +. -..++|.+... ++.+
T Consensus 365 ~a~a~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrk-E~-----~paV~VDVRg~---EDtL 435 (664)
T PTZ00494 365 LAAAAEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRV-EG-----VALVHVDVGGT---EDTL 435 (664)
T ss_pred ccccccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHH-cC-----CCeEEEEecCC---cchH
Confidence 33444667888876 444566777777778999999999999999999988877 22 13677888754 4557
Q ss_pred HHHHHHhcCCCC
Q 038454 180 AEIAMALKLSLT 191 (359)
Q Consensus 180 ~~i~~~l~~~~~ 191 (359)
+++.+.|+.+.-
T Consensus 436 rsVVKALgV~nv 447 (664)
T PTZ00494 436 RSVVRALGVSNV 447 (664)
T ss_pred HHHHHHhCCCCh
Confidence 888889987543
No 211
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.97 E-value=0.0033 Score=58.51 Aligned_cols=90 Identities=12% Similarity=0.130 Sum_probs=56.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcc--cccCCC-ccEEEEEeCCCcCHHHHHHHHHHHhcCCCC---------CCccHH
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQ--EETNEF-SDVIWVTVSQPLDLVKLQAEIAMALKLSLT---------EDEDKV 197 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~--~~~~~F-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------~~~~~~ 197 (359)
-.++-|+|.+|+|||+|+..++-... ...+.- ..++|++....|+..++ .++++.++.+.. ...+.+
T Consensus 123 g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~~~~~~l~~i~~~~~~~~e 201 (342)
T PLN03186 123 GSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGLNGADVLENVAYARAYNTD 201 (342)
T ss_pred ceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCCChhhhccceEEEecCCHH
Confidence 46889999999999999998874411 111111 25899999998888776 455666654321 112233
Q ss_pred HHH---HHHHHHHhcCCcEEEEEecC
Q 038454 198 SRA---RRLLGKLKAKKKFVLILDDI 220 (359)
Q Consensus 198 ~~~---~~l~~~l~~~k~~LlVlDdv 220 (359)
... ..+...+...+--|||+|.+
T Consensus 202 ~~~~ll~~~~~~~~~~~~~LIVIDSI 227 (342)
T PLN03186 202 HQSELLLEAASMMAETRFALMIVDSA 227 (342)
T ss_pred HHHHHHHHHHHHhhccCCCEEEEeCc
Confidence 332 22323344436679999997
No 212
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.97 E-value=0.0058 Score=56.41 Aligned_cols=90 Identities=17% Similarity=0.188 Sum_probs=54.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccc--cC-CCccEEEEEeCCCcCHHHHHHHHHHHhcCCCC------------CCc
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEE--TN-EFSDVIWVTVSQPLDLVKLQAEIAMALKLSLT------------EDE 194 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~-~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------------~~~ 194 (359)
-.++-|+|.+|+|||+++.+++...... .+ .=..++||+....++..++. +++..++.... ...
T Consensus 95 g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~gl~~~~~~~~i~i~~~~~~~ 173 (310)
T TIGR02236 95 QAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARGLDPDEVLKNIYVARAYNSN 173 (310)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcCCCHHHHhhceEEEecCCHH
Confidence 4789999999999999999998662110 00 01268999998888877654 34444443210 001
Q ss_pred cHHHHHHHHHHHHhcC--CcEEEEEecC
Q 038454 195 DKVSRARRLLGKLKAK--KKFVLILDDI 220 (359)
Q Consensus 195 ~~~~~~~~l~~~l~~~--k~~LlVlDdv 220 (359)
........+.+.+... ..-++|+|.+
T Consensus 174 ~~~~lld~l~~~i~~~~~~~~lVVIDSi 201 (310)
T TIGR02236 174 HQMLLVEKAEDLIKELNNPVKLLIVDSL 201 (310)
T ss_pred HHHHHHHHHHHHHHhcCCCceEEEEecc
Confidence 1112334455555441 2458999987
No 213
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.025 Score=49.53 Aligned_cols=26 Identities=27% Similarity=0.455 Sum_probs=24.2
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 128 DKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 128 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
+.++=|.++|++|+|||.||++++++
T Consensus 187 dpprgvllygppg~gktml~kava~~ 212 (408)
T KOG0727|consen 187 DPPRGVLLYGPPGTGKTMLAKAVANH 212 (408)
T ss_pred CCCcceEEeCCCCCcHHHHHHHHhhc
Confidence 56788999999999999999999998
No 214
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.0063 Score=54.24 Aligned_cols=25 Identities=24% Similarity=0.424 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.++=|.++|.+|.|||-||++|+|+
T Consensus 218 pPKGVIlyG~PGTGKTLLAKAVANq 242 (440)
T KOG0726|consen 218 PPKGVILYGEPGTGKTLLAKAVANQ 242 (440)
T ss_pred CCCeeEEeCCCCCchhHHHHHHhcc
Confidence 4567889999999999999999999
No 215
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.95 E-value=0.0058 Score=54.99 Aligned_cols=87 Identities=15% Similarity=0.221 Sum_probs=56.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHHH-hcC----CCCCCccHHHHHHHH
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAMA-LKL----SLTEDEDKVSRARRL 203 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~-l~~----~~~~~~~~~~~~~~l 203 (359)
.-+++=|+|+.|+||||+|.+++-. ....-..++|++.-..+++..+.. ++.. +.. ...........+..+
T Consensus 59 ~g~ItEiyG~~gsGKT~lal~~~~~---aq~~g~~a~fIDtE~~l~p~r~~~-l~~~~~d~l~v~~~~~~e~q~~i~~~~ 134 (279)
T COG0468 59 RGRITEIYGPESSGKTTLALQLVAN---AQKPGGKAAFIDTEHALDPERAKQ-LGVDLLDNLLVSQPDTGEQQLEIAEKL 134 (279)
T ss_pred cceEEEEecCCCcchhhHHHHHHHH---hhcCCCeEEEEeCCCCCCHHHHHH-HHHhhhcceeEecCCCHHHHHHHHHHH
Confidence 3478999999999999999998876 233333789999998888877643 3333 222 111122223333333
Q ss_pred HHHHhcCCcEEEEEecC
Q 038454 204 LGKLKAKKKFVLILDDI 220 (359)
Q Consensus 204 ~~~l~~~k~~LlVlDdv 220 (359)
.+.... +--|+|+|.+
T Consensus 135 ~~~~~~-~i~LvVVDSv 150 (279)
T COG0468 135 ARSGAE-KIDLLVVDSV 150 (279)
T ss_pred HHhccC-CCCEEEEecC
Confidence 333333 4679999998
No 216
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.94 E-value=0.0013 Score=53.09 Aligned_cols=42 Identities=19% Similarity=0.364 Sum_probs=27.2
Q ss_pred cccchHHHHHHHHHHhcC--CCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 110 VGENTKKIVKKVWEDLMG--DKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 110 vGr~~~~~~~~l~~~l~~--~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
||... .+.++.+.+.. .....|.|+|..|+||+++|+.+++.
T Consensus 1 vG~S~--~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~ 44 (138)
T PF14532_consen 1 VGKSP--AMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRY 44 (138)
T ss_dssp --SCH--HHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHT
T ss_pred CCCCH--HHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhh
Confidence 45555 44444444421 23356899999999999999998887
No 217
>PRK14974 cell division protein FtsY; Provisional
Probab=96.93 E-value=0.0093 Score=55.38 Aligned_cols=89 Identities=22% Similarity=0.228 Sum_probs=49.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCC-CcCHHHHHHHHHHHhcCCCC---CCccHHHHHHHHH
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQ-PLDLVKLQAEIAMALKLSLT---EDEDKVSRARRLL 204 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~ 204 (359)
++.+|.++|++|+||||++..++..+ ....+. ++.++... .....+.+......++.+.. ...+....+....
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l--~~~g~~-V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYL--KKNGFS-VVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH--HHcCCe-EEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHH
Confidence 46899999999999999988888763 223343 33444321 12333445666677765322 1223333332222
Q ss_pred HHHhcCCcEEEEEecC
Q 038454 205 GKLKAKKKFVLILDDI 220 (359)
Q Consensus 205 ~~l~~~k~~LlVlDdv 220 (359)
+.......-++++|..
T Consensus 216 ~~~~~~~~DvVLIDTa 231 (336)
T PRK14974 216 EHAKARGIDVVLIDTA 231 (336)
T ss_pred HHHHhCCCCEEEEECC
Confidence 2222212338888887
No 218
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.93 E-value=0.024 Score=55.06 Aligned_cols=87 Identities=18% Similarity=0.201 Sum_probs=47.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCC-CcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHh
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQ-PLDLVKLQAEIAMALKLSLTEDEDKVSRARRLLGKLK 208 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 208 (359)
..+++++|+.|+||||++..++..+. ....-..+..++... .....+-+....+.++.......+..+....+ ..+.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~-~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL-~~L~ 333 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCV-MRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLAL-SELR 333 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHH-HhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHH-Hhcc
Confidence 37999999999999999999997731 121112344555432 22344455555666655432222222222222 2233
Q ss_pred cCCcEEEEEecC
Q 038454 209 AKKKFVLILDDI 220 (359)
Q Consensus 209 ~~k~~LlVlDdv 220 (359)
+ .-.+++|..
T Consensus 334 d--~d~VLIDTa 343 (484)
T PRK06995 334 N--KHIVLIDTI 343 (484)
T ss_pred C--CCeEEeCCC
Confidence 2 346666765
No 219
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.93 E-value=0.0038 Score=56.07 Aligned_cols=40 Identities=23% Similarity=0.391 Sum_probs=29.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQP 172 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~ 172 (359)
-.++.|.|.+|+|||++|.+++.... .. =..++|++...+
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a--~~-Ge~vlyis~Ee~ 75 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQA--SR-GNPVLFVTVESP 75 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH--hC-CCcEEEEEecCC
Confidence 47899999999999999999876521 22 235778887643
No 220
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.92 E-value=0.0056 Score=56.97 Aligned_cols=90 Identities=16% Similarity=0.138 Sum_probs=56.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCccc--ccCC-CccEEEEEeCCCcCHHHHHHHHHHHhcCCCC---------CCccHH
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQE--ETNE-FSDVIWVTVSQPLDLVKLQAEIAMALKLSLT---------EDEDKV 197 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~~-F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------~~~~~~ 197 (359)
-.++-|+|.+|+|||+|+.+++-..+. ..+. -..++|++....|+..++.+ +++.++.+.. ...+.+
T Consensus 126 G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d~~~~l~~I~~~~~~~~e 204 (344)
T PLN03187 126 RCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMDADAVLDNIIYARAYTYE 204 (344)
T ss_pred CeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCChhhhcCeEEEecCCCHH
Confidence 468889999999999999988643111 1122 23589999999889888754 5566654321 112333
Q ss_pred HH---HHHHHHHHhcCCcEEEEEecC
Q 038454 198 SR---ARRLLGKLKAKKKFVLILDDI 220 (359)
Q Consensus 198 ~~---~~~l~~~l~~~k~~LlVlDdv 220 (359)
+. +..+...+...+--|||+|.+
T Consensus 205 ~~~~~l~~l~~~i~~~~~~LvVIDSi 230 (344)
T PLN03187 205 HQYNLLLGLAAKMAEEPFRLLIVDSV 230 (344)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 33 233333443334568999998
No 221
>PRK10867 signal recognition particle protein; Provisional
Probab=96.91 E-value=0.0038 Score=59.92 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.+.+|.++|++|+||||++..++..
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~ 123 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKY 123 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHH
Confidence 3689999999999999988888775
No 222
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.91 E-value=0.00075 Score=56.46 Aligned_cols=23 Identities=22% Similarity=0.180 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.++.|.|.+|+||||+|..+...
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~ 24 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQ 24 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHH
Confidence 36899999999999999999876
No 223
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.90 E-value=0.0056 Score=58.72 Aligned_cols=25 Identities=28% Similarity=0.262 Sum_probs=22.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.+.++.++|.+|+||||+|..++..
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~ 122 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYY 122 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHH
Confidence 3679999999999999998888766
No 224
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.90 E-value=0.08 Score=50.06 Aligned_cols=70 Identities=17% Similarity=0.195 Sum_probs=46.5
Q ss_pred HHHHHHHHhcC---------CCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEe-CCCcCHHHHHHHHHHHh
Q 038454 117 IVKKVWEDLMG---------DKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTV-SQPLDLVKLQAEIAMAL 186 (359)
Q Consensus 117 ~~~~l~~~l~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~-~~~~~~~~~~~~i~~~l 186 (359)
..++|++.|.. ..+.+|..+|.-|.||||.|-.+++.+.+ ..+. +.-|+. ...+...+-++.+..+.
T Consensus 78 V~eELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk--~~~k-vllVaaD~~RpAA~eQL~~La~q~ 154 (451)
T COG0541 78 VYEELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKK--KGKK-VLLVAADTYRPAAIEQLKQLAEQV 154 (451)
T ss_pred HHHHHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHHHHHH--cCCc-eEEEecccCChHHHHHHHHHHHHc
Confidence 44566666652 24678999999999999999999988422 2232 333332 23345666778888887
Q ss_pred cCC
Q 038454 187 KLS 189 (359)
Q Consensus 187 ~~~ 189 (359)
+.+
T Consensus 155 ~v~ 157 (451)
T COG0541 155 GVP 157 (451)
T ss_pred CCc
Confidence 764
No 225
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.89 E-value=0.00066 Score=53.55 Aligned_cols=21 Identities=43% Similarity=0.779 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 038454 133 IGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 133 i~I~G~gGiGKTtLa~~v~~~ 153 (359)
|+|.|.+|+||||+|+.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999988
No 226
>PRK04328 hypothetical protein; Provisional
Probab=96.89 E-value=0.0039 Score=55.66 Aligned_cols=41 Identities=12% Similarity=0.070 Sum_probs=30.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCC
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQP 172 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~ 172 (359)
.-.++.|.|.+|+|||+||.++... . . ..-..++|++..+.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~-~-~-~~ge~~lyis~ee~ 62 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWN-G-L-QMGEPGVYVALEEH 62 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH-H-H-hcCCcEEEEEeeCC
Confidence 3478999999999999999997765 1 1 22345788887663
No 227
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.87 E-value=0.00098 Score=54.12 Aligned_cols=24 Identities=33% Similarity=0.441 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCc
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNRP 154 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~~ 154 (359)
.-|+|.|++|+||||+++.+.+.+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHH
Confidence 468999999999999999999883
No 228
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.87 E-value=0.0051 Score=56.82 Aligned_cols=90 Identities=12% Similarity=0.134 Sum_probs=54.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCc--ccccC-CCccEEEEEeCCCcCHHHHHHHHHHHhcCCCC---------CCccHH
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRP--QEETN-EFSDVIWVTVSQPLDLVKLQAEIAMALKLSLT---------EDEDKV 197 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~--~~~~~-~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------~~~~~~ 197 (359)
-.++.|+|.+|+|||+|+..++... ....+ .-..++|++....++..++ .++++.++.... ...+.+
T Consensus 96 g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~~~~~~l~~i~~~~~~~~~ 174 (316)
T TIGR02239 96 GSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGLNPEDVLDNVAYARAYNTD 174 (316)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCCChHHhhccEEEEecCChH
Confidence 5789999999999999999987531 10111 1124789998887777764 444555443221 011223
Q ss_pred HH---HHHHHHHHhcCCcEEEEEecC
Q 038454 198 SR---ARRLLGKLKAKKKFVLILDDI 220 (359)
Q Consensus 198 ~~---~~~l~~~l~~~k~~LlVlDdv 220 (359)
+. +..+...+...+--|||+|.+
T Consensus 175 ~~~~~l~~~~~~~~~~~~~LvVIDSI 200 (316)
T TIGR02239 175 HQLQLLQQAAAMMSESRFALLIVDSA 200 (316)
T ss_pred HHHHHHHHHHHhhccCCccEEEEECc
Confidence 32 333333344435668999997
No 229
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.86 E-value=0.01 Score=52.21 Aligned_cols=26 Identities=23% Similarity=0.432 Sum_probs=23.9
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 128 DKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 128 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
++..+|+|.|++|+|||||++.+...
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 56789999999999999999999987
No 230
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.86 E-value=0.0053 Score=64.49 Aligned_cols=46 Identities=20% Similarity=0.321 Sum_probs=35.1
Q ss_pred cccccccchHHHHHHHHHHhcC-------C--CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 106 TTTLVGENTKKIVKKVWEDLMG-------D--KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
...++|.+. .++.+...+.. . ...++.++|++|+|||++|+.++..
T Consensus 564 ~~~v~GQ~~--av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~ 618 (852)
T TIGR03346 564 HERVVGQDE--AVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEF 618 (852)
T ss_pred hcccCCChH--HHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 356899876 66666666642 1 1357889999999999999999987
No 231
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.85 E-value=0.0018 Score=54.78 Aligned_cols=22 Identities=27% Similarity=0.209 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 038454 132 KIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 132 vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
+|.|+|++|+||||+|+.++..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~ 22 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVEN 22 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999987
No 232
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.85 E-value=0.001 Score=57.70 Aligned_cols=28 Identities=32% Similarity=0.353 Sum_probs=24.7
Q ss_pred CCCccEEEEEcCCCCcHHHHHHHHHcCc
Q 038454 127 GDKVTKIGVWGMGGFGKTAIMRHINNRP 154 (359)
Q Consensus 127 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 154 (359)
..+..+|+|.|.+|+|||||++.++..+
T Consensus 3 ~~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 3 MKKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3456899999999999999999999873
No 233
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.84 E-value=0.0016 Score=57.09 Aligned_cols=86 Identities=16% Similarity=0.209 Sum_probs=53.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHHHhcCC---------------CCC--
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAMALKLS---------------LTE-- 192 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~---------------~~~-- 192 (359)
-.++.|.|.+|+|||+|+.++...... +.=..++||+...++ .++.+.+- +++.+ ...
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~--~~ge~vlyvs~ee~~--~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~~ 93 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLK--NFGEKVLYVSFEEPP--EELIENMK-SFGWDLEEYEDSGKLKIIDAFPERI 93 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHH--HHT--EEEEESSS-H--HHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGGS
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhh--hcCCcEEEEEecCCH--HHHHHHHH-HcCCcHHHHhhcCCEEEEecccccc
Confidence 479999999999999999997765111 101247888875543 44433322 23210 000
Q ss_pred ---CccHHHHHHHHHHHHhcCCcEEEEEecC
Q 038454 193 ---DEDKVSRARRLLGKLKAKKKFVLILDDI 220 (359)
Q Consensus 193 ---~~~~~~~~~~l~~~l~~~k~~LlVlDdv 220 (359)
..+.......+.+.+...+...+|+|.+
T Consensus 94 ~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsl 124 (226)
T PF06745_consen 94 GWSPNDLEELLSKIREAIEELKPDRVVIDSL 124 (226)
T ss_dssp T-TSCCHHHHHHHHHHHHHHHTSSEEEEETH
T ss_pred cccccCHHHHHHHHHHHHHhcCCCEEEEECH
Confidence 2456777777777776545579999998
No 234
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.83 E-value=0.00064 Score=55.66 Aligned_cols=25 Identities=32% Similarity=0.401 Sum_probs=22.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCc
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRP 154 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~ 154 (359)
..+|.++|.+|+||||||+++.+.+
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L 26 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRL 26 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999999983
No 235
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=96.82 E-value=0.004 Score=57.16 Aligned_cols=83 Identities=13% Similarity=0.158 Sum_probs=52.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHHHhcCCCC-----CCccHHHHHHHHH
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAMALKLSLT-----EDEDKVSRARRLL 204 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 204 (359)
-+++-|+|+.|+||||||.++...+ ...-..++|++....++... +..++.+.. .....++.+....
T Consensus 53 G~ivEi~G~~ssGKttLaL~~ia~~---q~~g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~~P~~~E~al~~~e 124 (322)
T PF00154_consen 53 GRIVEIYGPESSGKTTLALHAIAEA---QKQGGICAFIDAEHALDPEY-----AESLGVDLDRLLVVQPDTGEQALWIAE 124 (322)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHH---HHTT-EEEEEESSS---HHH-----HHHTT--GGGEEEEE-SSHHHHHHHHH
T ss_pred CceEEEeCCCCCchhhhHHHHHHhh---hcccceeEEecCcccchhhH-----HHhcCccccceEEecCCcHHHHHHHHH
Confidence 4689999999999999999998772 22234588999887766543 344443221 1234555666666
Q ss_pred HHHhcCCcEEEEEecC
Q 038454 205 GKLKAKKKFVLILDDI 220 (359)
Q Consensus 205 ~~l~~~k~~LlVlDdv 220 (359)
..++.+..-++|+|.|
T Consensus 125 ~lirsg~~~lVVvDSv 140 (322)
T PF00154_consen 125 QLIRSGAVDLVVVDSV 140 (322)
T ss_dssp HHHHTTSESEEEEE-C
T ss_pred HHhhcccccEEEEecC
Confidence 6666655669999998
No 236
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.82 E-value=0.0035 Score=51.20 Aligned_cols=22 Identities=32% Similarity=0.555 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 038454 132 KIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 132 vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
+|.|+|.+|+||||||+.+...
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~ 22 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEK 22 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999999887
No 237
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.022 Score=56.81 Aligned_cols=65 Identities=18% Similarity=0.225 Sum_probs=43.6
Q ss_pred cccccccchHHHHHHHHHHhcC------CCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHH
Q 038454 106 TTTLVGENTKKIVKKVWEDLMG------DKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKL 178 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~ 178 (359)
+..-+|.++ .++++++++.- -+-+++..+|++|+|||++|+.++.-+ .+..| -++++.-.|..++
T Consensus 410 deDHYgm~d--VKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~AL--nRkFf----RfSvGG~tDvAeI 480 (906)
T KOG2004|consen 410 DEDHYGMED--VKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARAL--NRKFF----RFSVGGMTDVAEI 480 (906)
T ss_pred cccccchHH--HHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHh--CCceE----EEeccccccHHhh
Confidence 445566655 67777777732 245899999999999999999999874 23322 2455554444443
No 238
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.81 E-value=0.0027 Score=53.44 Aligned_cols=23 Identities=22% Similarity=0.473 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCc
Q 038454 132 KIGVWGMGGFGKTAIMRHINNRP 154 (359)
Q Consensus 132 vi~I~G~gGiGKTtLa~~v~~~~ 154 (359)
.|.|.|.+|+||||+|+.+.+.+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999983
No 239
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.81 E-value=0.00098 Score=57.08 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCc
Q 038454 132 KIGVWGMGGFGKTAIMRHINNRP 154 (359)
Q Consensus 132 vi~I~G~gGiGKTtLa~~v~~~~ 154 (359)
||+|.|.+|+||||+|+.+...+
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L 23 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQIL 23 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 69999999999999999999874
No 240
>PRK08233 hypothetical protein; Provisional
Probab=96.80 E-value=0.001 Score=56.04 Aligned_cols=25 Identities=20% Similarity=0.339 Sum_probs=22.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCc
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRP 154 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~ 154 (359)
..+|+|.|.+|+||||||..++..+
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 4789999999999999999999874
No 241
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.80 E-value=0.0079 Score=53.30 Aligned_cols=86 Identities=15% Similarity=0.130 Sum_probs=52.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCC-----CcCHHHHHHHHHHHhcCCC------CCC-ccHH
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQ-----PLDLVKLQAEIAMALKLSL------TED-EDKV 197 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~-----~~~~~~~~~~i~~~l~~~~------~~~-~~~~ 197 (359)
-.+++|+|.+|+|||||++.+..-. . .-.+.+++.-.+ .....+...+++...+... +.. +...
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~L~---~-pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILGLE---E-PTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHcCc---C-CCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 4789999999999999999998862 2 222333333211 2223445566666666422 111 2222
Q ss_pred HHHHHHHHHHhcCCcEEEEEecC
Q 038454 198 SRARRLLGKLKAKKKFVLILDDI 220 (359)
Q Consensus 198 ~~~~~l~~~l~~~k~~LlVlDdv 220 (359)
...-.+.+.|.- ++-|+|.|..
T Consensus 115 rQRi~IARALal-~P~liV~DEp 136 (268)
T COG4608 115 RQRIGIARALAL-NPKLIVADEP 136 (268)
T ss_pred hhhHHHHHHHhh-CCcEEEecCc
Confidence 333445566666 8999999987
No 242
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.79 E-value=0.018 Score=53.41 Aligned_cols=25 Identities=28% Similarity=0.290 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
-...+.++|+.|+||||+|..++..
T Consensus 20 ~~hA~Lf~G~~G~GK~~la~~~a~~ 44 (325)
T PRK08699 20 RPNAWLFAGKKGIGKTAFARFAAQA 44 (325)
T ss_pred cceEEEeECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999999877
No 243
>PTZ00035 Rad51 protein; Provisional
Probab=96.79 E-value=0.0096 Score=55.50 Aligned_cols=89 Identities=13% Similarity=0.176 Sum_probs=53.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccc---cC-CCccEEEEEeCCCcCHHHHHHHHHHHhcCCCC---------CCccH
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEE---TN-EFSDVIWVTVSQPLDLVKLQAEIAMALKLSLT---------EDEDK 196 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~-~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------~~~~~ 196 (359)
-.++.|+|.+|+|||+|+..++-. ... .+ .=..++|++....++..++ .++++.++.... ...+.
T Consensus 118 G~iteI~G~~GsGKT~l~~~l~~~-~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~~~~~~l~nI~~~~~~~~ 195 (337)
T PTZ00035 118 GSITELFGEFRTGKTQLCHTLCVT-CQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGLDPEDVLDNIAYARAYNH 195 (337)
T ss_pred CeEEEEECCCCCchhHHHHHHHHH-hccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCCChHhHhhceEEEccCCH
Confidence 478999999999999999988754 111 11 1124679988777777664 444555544211 11222
Q ss_pred HHHHH---HHHHHHhcCCcEEEEEecC
Q 038454 197 VSRAR---RLLGKLKAKKKFVLILDDI 220 (359)
Q Consensus 197 ~~~~~---~l~~~l~~~k~~LlVlDdv 220 (359)
++... .+...+...+--|||+|.+
T Consensus 196 e~~~~~l~~~~~~l~~~~~~lvVIDSi 222 (337)
T PTZ00035 196 EHQMQLLSQAAAKMAEERFALLIVDSA 222 (337)
T ss_pred HHHHHHHHHHHHHhhccCccEEEEECc
Confidence 33333 3333343435669999997
No 244
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.78 E-value=0.0062 Score=56.99 Aligned_cols=88 Identities=15% Similarity=0.135 Sum_probs=53.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCC-cCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHH
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQP-LDLVKLQAEIAMALKLSLTEDEDKVSRARRLLGKL 207 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 207 (359)
+.+++.++|+.|+||||++..++..+ .... ..+.+++.... ....+-++.....++.+.....+..+....+. .+
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l--~~~g-~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~-~l 280 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQL--LKQN-RTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQ-YM 280 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HHcC-CeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHH-HH
Confidence 46799999999999999999998763 1222 24666766433 23345566666666654333345555544343 33
Q ss_pred h-cCCcEEEEEecC
Q 038454 208 K-AKKKFVLILDDI 220 (359)
Q Consensus 208 ~-~~k~~LlVlDdv 220 (359)
. .+..-++++|-.
T Consensus 281 ~~~~~~D~VLIDTA 294 (407)
T PRK12726 281 TYVNCVDHILIDTV 294 (407)
T ss_pred HhcCCCCEEEEECC
Confidence 3 114567777876
No 245
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=96.78 E-value=0.08 Score=54.48 Aligned_cols=45 Identities=22% Similarity=0.354 Sum_probs=31.9
Q ss_pred ccccccchHHHHHHHHHHhc--CCCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 107 TTLVGENTKKIVKKVWEDLM--GDKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 107 ~~~vGr~~~~~~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..++|.+. .+..+.+.+. ......|.|+|..|+|||++|+.+++.
T Consensus 376 ~~liG~S~--~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~ 422 (686)
T PRK15429 376 GEIIGRSE--AMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNL 422 (686)
T ss_pred cceeecCH--HHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHh
Confidence 36888876 4444433332 122356999999999999999999886
No 246
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.77 E-value=0.0061 Score=59.39 Aligned_cols=161 Identities=18% Similarity=0.266 Sum_probs=89.3
Q ss_pred cccccccchHHHHHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHH
Q 038454 106 TTTLVGENTKKIVKKVWEDLMGDK-VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAM 184 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 184 (359)
-+++||.+. ....|...+..++ ..-....|+-|+||||+|+-++.-+ ...+ | ....+++.=...+.|..
T Consensus 15 F~evvGQe~--v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~Akal--NC~~-----~-~~~ePC~~C~~Ck~I~~ 84 (515)
T COG2812 15 FDDVVGQEH--VVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKAL--NCEN-----G-PTAEPCGKCISCKEINE 84 (515)
T ss_pred HHHhcccHH--HHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHh--cCCC-----C-CCCCcchhhhhhHhhhc
Confidence 356799866 7788888887765 3567889999999999999988762 1110 0 00111111111122221
Q ss_pred Hh-----cCCCCCCccHHHHHHHHHHHHhc----CCcEEEEEecC------------------CCC-eE-EEeec-----
Q 038454 185 AL-----KLSLTEDEDKVSRARRLLGKLKA----KKKFVLILDDI------------------DNH-TF-CWGLR----- 230 (359)
Q Consensus 185 ~l-----~~~~~~~~~~~~~~~~l~~~l~~----~k~~LlVlDdv------------------~~g-~i-lvTtr----- 230 (359)
.- ..+.. .....+-.+.+.+...- .+.-+.|+|.| .+. .+ +.||-
T Consensus 85 g~~~DviEiDaA-Sn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip 163 (515)
T COG2812 85 GSLIDVIEIDAA-SNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIP 163 (515)
T ss_pred CCcccchhhhhh-hccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCc
Confidence 10 00000 01112223333333321 35568899999 334 44 44554
Q ss_pred ---ccceeeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCc
Q 038454 231 ---SMGCEEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGL 280 (359)
Q Consensus 231 ---~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~ 280 (359)
...|+.|.+..++.++-...+...+...+. ....+...-|++...|.
T Consensus 164 ~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I---~~e~~aL~~ia~~a~Gs 213 (515)
T COG2812 164 NTILSRCQRFDFKRLDLEEIAKHLAAILDKEGI---NIEEDALSLIARAAEGS 213 (515)
T ss_pred hhhhhccccccccCCCHHHHHHHHHHHHHhcCC---ccCHHHHHHHHHHcCCC
Confidence 345678999999999888888877644322 12234445555555553
No 247
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.77 E-value=0.0073 Score=52.80 Aligned_cols=23 Identities=26% Similarity=0.328 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCc
Q 038454 132 KIGVWGMGGFGKTAIMRHINNRP 154 (359)
Q Consensus 132 vi~I~G~gGiGKTtLa~~v~~~~ 154 (359)
+|+|.|.+|+||||||+.+...+
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999873
No 248
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.77 E-value=0.0057 Score=64.00 Aligned_cols=46 Identities=17% Similarity=0.300 Sum_probs=34.1
Q ss_pred cccccccchHHHHHHHHHHhcC-------C--CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 106 TTTLVGENTKKIVKKVWEDLMG-------D--KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
...++|.+. .+..+...+.. . ....+.++|++|+|||+||+.+++.
T Consensus 508 ~~~v~GQ~~--ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~ 562 (821)
T CHL00095 508 HKRIIGQDE--AVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASY 562 (821)
T ss_pred cCcCcChHH--HHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHH
Confidence 356888866 66666665531 1 1345779999999999999999987
No 249
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.76 E-value=0.025 Score=57.49 Aligned_cols=46 Identities=24% Similarity=0.246 Sum_probs=32.0
Q ss_pred cccccch-HHHHHHHHHHhcCC---------CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 108 TLVGENT-KKIVKKVWEDLMGD---------KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 108 ~~vGr~~-~~~~~~l~~~l~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.+.|.+. .+.+.+++.++.+. -.+-|.++|++|+|||++|+.+++.
T Consensus 153 di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~ 208 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE 208 (644)
T ss_pred HHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 3455443 44455666655431 1345999999999999999999987
No 250
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.75 E-value=0.0028 Score=54.46 Aligned_cols=23 Identities=22% Similarity=0.221 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.+|.|.|+.|+||||++..+...
T Consensus 2 GlilI~GptGSGKTTll~~ll~~ 24 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDY 24 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999988877
No 251
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.73 E-value=0.0043 Score=50.46 Aligned_cols=44 Identities=25% Similarity=0.315 Sum_probs=33.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHHHhcCC
Q 038454 132 KIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAMALKLS 189 (359)
Q Consensus 132 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 189 (359)
+|.|.|++|+||||+|+.+++++ .-.| | +...+++++++..+.+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~---gl~~-----v------saG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHL---GLKL-----V------SAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHh---CCce-----e------eccHHHHHHHHHcCCC
Confidence 68999999999999999999983 1111 1 3346788888887764
No 252
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.73 E-value=0.0094 Score=52.48 Aligned_cols=48 Identities=15% Similarity=0.124 Sum_probs=32.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHH
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEI 182 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 182 (359)
-.++.|.|.+|+||||||.+++... .... ..++|++... +..++++.+
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~--~~~g-~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGF--LQNG-YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH--HhCC-CcEEEEeCCC--CHHHHHHHH
Confidence 4689999999999999987776652 1222 2356666333 455665555
No 253
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=96.73 E-value=0.033 Score=51.84 Aligned_cols=43 Identities=23% Similarity=0.292 Sum_probs=29.0
Q ss_pred ccccchHHHHHHHHHHhcC--CCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 109 LVGENTKKIVKKVWEDLMG--DKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 109 ~vGr~~~~~~~~l~~~l~~--~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
++|.+. .+.++.+.+.. .....|.|+|..|+||+++|+.+.+.
T Consensus 1 liG~S~--~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESN--AFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCH--HHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHh
Confidence 466665 34443333321 22355899999999999999998876
No 254
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.73 E-value=0.02 Score=49.82 Aligned_cols=48 Identities=21% Similarity=0.340 Sum_probs=35.1
Q ss_pred CcccccccchHHHHHHHHH----HhcCCCccEEEEEcCCCCcHHHHHHHHHcCc
Q 038454 105 PTTTLVGENTKKIVKKVWE----DLMGDKVTKIGVWGMGGFGKTAIMRHINNRP 154 (359)
Q Consensus 105 ~~~~~vGr~~~~~~~~l~~----~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 154 (359)
.-..++|.+. ..+.|++ ++..-...-|.+||.-|+|||+|++++.+.+
T Consensus 58 ~L~~l~Gvd~--qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~ 109 (287)
T COG2607 58 DLADLVGVDR--QKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEY 109 (287)
T ss_pred CHHHHhCchH--HHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHH
Confidence 3457889876 4444443 3333455679999999999999999999883
No 255
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.72 E-value=0.0014 Score=52.95 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 038454 132 KIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 132 vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
+|.+.|++|+||||+|+.+...
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999876
No 256
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.72 E-value=0.0058 Score=62.83 Aligned_cols=45 Identities=18% Similarity=0.271 Sum_probs=33.9
Q ss_pred ccccccchHHHHHHHHHHhcC---------CCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 107 TTLVGENTKKIVKKVWEDLMG---------DKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 107 ~~~vGr~~~~~~~~l~~~l~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..++|.+. .++.|...+.. .....+.++|++|+|||+||+.++..
T Consensus 458 ~~ViGQ~~--ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~ 511 (758)
T PRK11034 458 MLVFGQDK--AIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA 511 (758)
T ss_pred ceEeCcHH--HHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHH
Confidence 45788866 66666665531 12457899999999999999999987
No 257
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.72 E-value=0.0041 Score=52.65 Aligned_cols=44 Identities=18% Similarity=0.130 Sum_probs=30.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHH
Q 038454 132 KIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQA 180 (359)
Q Consensus 132 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 180 (359)
++.|.|.+|+|||+||.+++.... +.. ..++|++... +..++.+
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~--~~g-~~v~~~s~e~--~~~~~~~ 44 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGL--ARG-EPGLYVTLEE--SPEELIE 44 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH--HCC-CcEEEEECCC--CHHHHHH
Confidence 368999999999999999877621 222 3477887654 3444433
No 258
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.44 Score=43.04 Aligned_cols=69 Identities=16% Similarity=0.328 Sum_probs=45.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhc
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAMALKLSLTEDEDKVSRARRLLGKLKA 209 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 209 (359)
-+-|.++|++|.||+-||++|+.. .. . -|+++|.. .+.+... ...+.+...+.+.-+.
T Consensus 166 wrgiLLyGPPGTGKSYLAKAVATE-An--S-----TFFSvSSS--------DLvSKWm------GESEkLVknLFemARe 223 (439)
T KOG0739|consen 166 WRGILLYGPPGTGKSYLAKAVATE-AN--S-----TFFSVSSS--------DLVSKWM------GESEKLVKNLFEMARE 223 (439)
T ss_pred ceeEEEeCCCCCcHHHHHHHHHhh-cC--C-----ceEEeehH--------HHHHHHh------ccHHHHHHHHHHHHHh
Confidence 467999999999999999999987 22 2 23344432 1111111 1335566666666666
Q ss_pred CCcEEEEEecC
Q 038454 210 KKKFVLILDDI 220 (359)
Q Consensus 210 ~k~~LlVlDdv 220 (359)
+++.+|.+|.+
T Consensus 224 ~kPSIIFiDEi 234 (439)
T KOG0739|consen 224 NKPSIIFIDEI 234 (439)
T ss_pred cCCcEEEeehh
Confidence 68888888888
No 259
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.70 E-value=0.0078 Score=56.99 Aligned_cols=89 Identities=12% Similarity=0.099 Sum_probs=53.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcCccccc-CCCccEEEEEeCCC-cCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHH
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNRPQEET-NEFSDVIWVTVSQP-LDLVKLQAEIAMALKLSLTEDEDKVSRARRLLGK 206 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 206 (359)
...+|.++|+.|+||||.+..++..+.... ..-..+..++.... ......++..++.++.+.....+.......+.+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~- 251 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ- 251 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH-
Confidence 357999999999999999999987732111 11123555655432 223344666677676654333444444333333
Q ss_pred HhcCCcEEEEEecC
Q 038454 207 LKAKKKFVLILDDI 220 (359)
Q Consensus 207 l~~~k~~LlVlDdv 220 (359)
+ . +.-++++|..
T Consensus 252 ~-~-~~DlVLIDTa 263 (388)
T PRK12723 252 S-K-DFDLVLVDTI 263 (388)
T ss_pred h-C-CCCEEEEcCC
Confidence 2 2 5668888987
No 260
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.70 E-value=0.0019 Score=63.23 Aligned_cols=44 Identities=14% Similarity=0.268 Sum_probs=37.4
Q ss_pred cccccchHHHHHHHHHHh------cCCCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 108 TLVGENTKKIVKKVWEDL------MGDKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 108 ~~vGr~~~~~~~~l~~~l------~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.++|.+. .++++++.+ .+..-+++.++|++|+||||||+.+++-
T Consensus 77 d~yGlee--~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~ 126 (644)
T PRK15455 77 EFYGMEE--AIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSL 126 (644)
T ss_pred cccCcHH--HHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHH
Confidence 5789866 888888877 3456689999999999999999999987
No 261
>PRK06762 hypothetical protein; Provisional
Probab=96.68 E-value=0.0013 Score=54.65 Aligned_cols=24 Identities=38% Similarity=0.545 Sum_probs=22.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
+.+|.|.|++|+||||+|+.+.+.
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999987
No 262
>PRK05973 replicative DNA helicase; Provisional
Probab=96.68 E-value=0.015 Score=51.26 Aligned_cols=47 Identities=11% Similarity=0.062 Sum_probs=31.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHH
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAE 181 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 181 (359)
-.++.|.|.+|+|||+++.+++... ..+. ..++|++.... ..++...
T Consensus 64 Gsl~LIaG~PG~GKT~lalqfa~~~--a~~G-e~vlyfSlEes--~~~i~~R 110 (237)
T PRK05973 64 GDLVLLGARPGHGKTLLGLELAVEA--MKSG-RTGVFFTLEYT--EQDVRDR 110 (237)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHH--HhcC-CeEEEEEEeCC--HHHHHHH
Confidence 3689999999999999999988762 1222 34667666543 3444444
No 263
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.67 E-value=0.02 Score=50.30 Aligned_cols=40 Identities=28% Similarity=0.277 Sum_probs=29.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQP 172 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~ 172 (359)
-.++.|.|.+|+||||||.+++.... . .-..++|++....
T Consensus 20 G~~~~i~G~~G~GKT~l~~~~~~~~~--~-~g~~~~~is~e~~ 59 (229)
T TIGR03881 20 GFFVAVTGEPGTGKTIFCLHFAYKGL--R-DGDPVIYVTTEES 59 (229)
T ss_pred CeEEEEECCCCCChHHHHHHHHHHHH--h-cCCeEEEEEccCC
Confidence 47899999999999999998776521 1 2235788876443
No 264
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.66 E-value=0.0041 Score=51.35 Aligned_cols=30 Identities=30% Similarity=0.432 Sum_probs=25.8
Q ss_pred hcCCCccEEEEEcCCCCcHHHHHHHHHcCc
Q 038454 125 LMGDKVTKIGVWGMGGFGKTAIMRHINNRP 154 (359)
Q Consensus 125 l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 154 (359)
+...+..+|-++|++|.||||+|.+++..+
T Consensus 18 ~~~~~~~viW~TGLSGsGKSTiA~ale~~L 47 (197)
T COG0529 18 LKGQKGAVIWFTGLSGSGKSTIANALEEKL 47 (197)
T ss_pred HhCCCCeEEEeecCCCCCHHHHHHHHHHHH
Confidence 344556899999999999999999999983
No 265
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.66 E-value=0.0015 Score=45.73 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCc
Q 038454 132 KIGVWGMGGFGKTAIMRHINNRP 154 (359)
Q Consensus 132 vi~I~G~gGiGKTtLa~~v~~~~ 154 (359)
+|+|.|.+|+||||+++.+.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999873
No 266
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.64 E-value=0.011 Score=50.31 Aligned_cols=42 Identities=14% Similarity=0.210 Sum_probs=28.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCcccccCCC-------ccEEEEEeCCC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNRPQEETNEF-------SDVIWVTVSQP 172 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F-------~~~~wv~~~~~ 172 (359)
.++.|.|.+|+||||++..++..+..-...| ..++|++....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 5899999999999999999988742211111 25788876655
No 267
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.64 E-value=0.042 Score=47.13 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
-.+++|.|++|+|||||.+.+..-
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~L 51 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNGL 51 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 468999999999999999988764
No 268
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.64 E-value=0.0055 Score=58.15 Aligned_cols=85 Identities=13% Similarity=0.118 Sum_probs=44.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCC-CcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHh
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQ-PLDLVKLQAEIAMALKLSLTEDEDKVSRARRLLGKLK 208 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 208 (359)
..++.++|++|+||||++..++..+ .....+ .+..++... .......+...+..++.+.....+ ...+.+.+.
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~-~~~~G~-~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~----~~~l~~~l~ 296 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY-FLHMGK-SVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKD----IKKFKETLA 296 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH-HHhcCC-eEEEecccchhhhHHHHHHHHHHhcCCCeeehHH----HHHHHHHHH
Confidence 4689999999999999999998762 112222 233333322 122333444444555543321111 223444443
Q ss_pred cCCcEEEEEecC
Q 038454 209 AKKKFVLILDDI 220 (359)
Q Consensus 209 ~~k~~LlVlDdv 220 (359)
....-++++|-.
T Consensus 297 ~~~~D~VLIDTa 308 (432)
T PRK12724 297 RDGSELILIDTA 308 (432)
T ss_pred hCCCCEEEEeCC
Confidence 323345777753
No 269
>PTZ00301 uridine kinase; Provisional
Probab=96.63 E-value=0.0015 Score=56.67 Aligned_cols=24 Identities=33% Similarity=0.545 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..+|+|.|.+|+||||||+.+.+.
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~ 26 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSE 26 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHH
Confidence 468999999999999999988876
No 270
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.63 E-value=0.0095 Score=56.96 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=22.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.+.+|.++|++|+||||++..++..
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~ 123 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYY 123 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3689999999999999999998876
No 271
>PRK12678 transcription termination factor Rho; Provisional
Probab=96.63 E-value=0.0029 Score=61.86 Aligned_cols=89 Identities=21% Similarity=0.162 Sum_probs=48.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEE-EEEeCCCcC-HHHHHHHHHHHhcCCCCCCcc-----HHHHHHH
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVI-WVTVSQPLD-LVKLQAEIAMALKLSLTEDED-----KVSRARR 202 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~-wv~~~~~~~-~~~~~~~i~~~l~~~~~~~~~-----~~~~~~~ 202 (359)
-.-.+|+|.+|+|||||++.+++.+ ..++-++.+ .+-+.+... +.++.+.+-..+-....+... .....-.
T Consensus 416 GQR~LIvgpp~aGKTtLL~~IAn~i--~~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~ 493 (672)
T PRK12678 416 GQRGLIVSPPKAGKTTILQNIANAI--TTNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIE 493 (672)
T ss_pred CCEeEEeCCCCCCHHHHHHHHHHHH--hhcCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHH
Confidence 3568999999999999999999973 223334433 444555433 333333321111111111111 1122233
Q ss_pred HHHHHhc-CCcEEEEEecC
Q 038454 203 LLGKLKA-KKKFVLILDDI 220 (359)
Q Consensus 203 l~~~l~~-~k~~LlVlDdv 220 (359)
+.+++.. ++.+||++|++
T Consensus 494 ~Ae~fre~G~dVlillDSl 512 (672)
T PRK12678 494 RAKRLVELGKDVVVLLDSI 512 (672)
T ss_pred HHHHHHHcCCCEEEEEeCc
Confidence 3445533 59999999999
No 272
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=96.63 E-value=0.0071 Score=52.52 Aligned_cols=85 Identities=20% Similarity=0.408 Sum_probs=51.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCC-cCHHHHHHHHHHHhc-------CCCCCCccHHH----
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQP-LDLVKLQAEIAMALK-------LSLTEDEDKVS---- 198 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~-------~~~~~~~~~~~---- 198 (359)
..++|.|.+|+|||+|+..+.+. . .-+.++++.+++. ....++.+++...-. ....+......
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~-~----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~ 90 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANN-Q----DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAP 90 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH-C----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhc-c----cccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhh
Confidence 57999999999999999999988 2 2344578888765 355666666644311 11111111111
Q ss_pred -HHHHHHHHHhc-CCcEEEEEecC
Q 038454 199 -RARRLLGKLKA-KKKFVLILDDI 220 (359)
Q Consensus 199 -~~~~l~~~l~~-~k~~LlVlDdv 220 (359)
..-.+.++++. ++++|+++||+
T Consensus 91 ~~a~t~AEyfrd~G~dVlli~Dsl 114 (215)
T PF00006_consen 91 YTALTIAEYFRDQGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHHHTTSEEEEEEETH
T ss_pred ccchhhhHHHhhcCCceeehhhhh
Confidence 11222344432 49999999997
No 273
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.62 E-value=0.0019 Score=56.70 Aligned_cols=22 Identities=27% Similarity=0.536 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 038454 132 KIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 132 vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.|.|.|++|+||||+|+.+++.
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999887
No 274
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.62 E-value=0.0018 Score=56.05 Aligned_cols=25 Identities=40% Similarity=0.531 Sum_probs=22.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
...+|+|+|++|+|||||++.++..
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999886
No 275
>PRK14527 adenylate kinase; Provisional
Probab=96.61 E-value=0.0034 Score=53.58 Aligned_cols=25 Identities=20% Similarity=0.210 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
...+|.|+|++|+||||+|+.+++.
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~ 29 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQE 29 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999877
No 276
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.60 E-value=0.015 Score=52.50 Aligned_cols=88 Identities=19% Similarity=0.220 Sum_probs=47.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCC-cCHHHHHHHHHHHhcCCC---CCCccHHHHH-HHH
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQP-LDLVKLQAEIAMALKLSL---TEDEDKVSRA-RRL 203 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~---~~~~~~~~~~-~~l 203 (359)
+.+++.++|++|+||||++..++..+. ... ..+.+++.... ....+-+.......+.+. ....+..... ..+
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~--~~g-~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l 147 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLK--KQG-KSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAI 147 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH--hcC-CEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHH
Confidence 458999999999999999999987731 222 23556654321 112233444455554321 1122232222 333
Q ss_pred HHHHhcCCcEEEEEecC
Q 038454 204 LGKLKAKKKFVLILDDI 220 (359)
Q Consensus 204 ~~~l~~~k~~LlVlDdv 220 (359)
...... ..-++++|-.
T Consensus 148 ~~~~~~-~~D~ViIDT~ 163 (272)
T TIGR00064 148 QKAKAR-NIDVVLIDTA 163 (272)
T ss_pred HHHHHC-CCCEEEEeCC
Confidence 333333 4557777876
No 277
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.60 E-value=0.0058 Score=57.66 Aligned_cols=85 Identities=19% Similarity=0.210 Sum_probs=49.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHHHhcCCCCCC-ccHHHHHHHHHHHHh
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAMALKLSLTED-EDKVSRARRLLGKLK 208 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~l~~~l~ 208 (359)
-.++.|.|.+|+|||||+.+++... ...-..++|++..+. ..++ ..-+..++...... ...+.....+.+.+.
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~---a~~g~~VlYvs~EEs--~~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~ 155 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARL---AKRGGKVLYVSGEES--PEQI-KLRADRLGISTENLYLLAETNLEDILASIE 155 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHH---HhcCCeEEEEECCcC--HHHH-HHHHHHcCCCcccEEEEccCcHHHHHHHHH
Confidence 3689999999999999999998773 222235778876543 3332 22234455422110 000111233333443
Q ss_pred cCCcEEEEEecC
Q 038454 209 AKKKFVLILDDI 220 (359)
Q Consensus 209 ~~k~~LlVlDdv 220 (359)
..+.-+||+|.+
T Consensus 156 ~~~~~lVVIDSI 167 (372)
T cd01121 156 ELKPDLVIIDSI 167 (372)
T ss_pred hcCCcEEEEcch
Confidence 336778999997
No 278
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.59 E-value=0.04 Score=46.44 Aligned_cols=85 Identities=20% Similarity=0.247 Sum_probs=49.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEE---eCCCcCHHHHH------HHHHHHhcCCC------CCCc
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVT---VSQPLDLVKLQ------AEIAMALKLSL------TEDE 194 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~---~~~~~~~~~~~------~~i~~~l~~~~------~~~~ 194 (359)
-.+++|.|..|.|||||++.++... ....+.+++. +.. .+..... .+++..++... ..-+
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~----~~~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS 99 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLL----KPSSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNELS 99 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCC
Confidence 3689999999999999999998862 2233444432 211 1221211 12344444321 1122
Q ss_pred cHHHHHHHHHHHHhcCCcEEEEEecC
Q 038454 195 DKVSRARRLLGKLKAKKKFVLILDDI 220 (359)
Q Consensus 195 ~~~~~~~~l~~~l~~~k~~LlVlDdv 220 (359)
......-.+.+.+.. .+-++++|+-
T Consensus 100 ~G~~qrl~laral~~-~p~llllDEP 124 (180)
T cd03214 100 GGERQRVLLARALAQ-EPPILLLDEP 124 (180)
T ss_pred HHHHHHHHHHHHHhc-CCCEEEEeCC
Confidence 333444455666666 7889999997
No 279
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.59 E-value=0.0078 Score=61.55 Aligned_cols=83 Identities=13% Similarity=0.142 Sum_probs=56.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHHHhcCCCC-----CCccHHHHHHHHH
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAMALKLSLT-----EDEDKVSRARRLL 204 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 204 (359)
-+++-|+|.+|+|||||+.+++.. .. ..=..++|++....++.. .+++++.+.. ...+.+.....+.
T Consensus 60 GsiteI~G~~GsGKTtLal~~~~~-a~--~~G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i~ 131 (790)
T PRK09519 60 GRVIEIYGPESSGKTTVALHAVAN-AQ--AAGGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 131 (790)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH-HH--HcCCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHHH
Confidence 478999999999999999887665 21 122347899887776642 5666665322 2334455555566
Q ss_pred HHHhcCCcEEEEEecC
Q 038454 205 GKLKAKKKFVLILDDI 220 (359)
Q Consensus 205 ~~l~~~k~~LlVlDdv 220 (359)
..+..++--|||+|.+
T Consensus 132 ~lv~~~~~~LVVIDSI 147 (790)
T PRK09519 132 MLIRSGALDIVVIDSV 147 (790)
T ss_pred HHhhcCCCeEEEEcch
Confidence 6565556779999998
No 280
>PRK07667 uridine kinase; Provisional
Probab=96.58 E-value=0.0029 Score=54.11 Aligned_cols=25 Identities=20% Similarity=0.384 Sum_probs=22.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
...+|+|.|.+|+||||+|..+...
T Consensus 16 ~~~iIgI~G~~gsGKStla~~L~~~ 40 (193)
T PRK07667 16 NRFILGIDGLSRSGKTTFVANLKEN 40 (193)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4479999999999999999999987
No 281
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.57 E-value=0.0017 Score=54.97 Aligned_cols=25 Identities=28% Similarity=0.251 Sum_probs=22.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
+.++|.|.|++|+||||+|+.++..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~ 26 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEK 26 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999876
No 282
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.57 E-value=0.0075 Score=54.35 Aligned_cols=24 Identities=21% Similarity=0.203 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCc
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNRP 154 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~~ 154 (359)
+.|.|.|.+|+||||+|+.+...+
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~ 25 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYL 25 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Confidence 468999999999999999999884
No 283
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=96.57 E-value=0.012 Score=56.21 Aligned_cols=86 Identities=12% Similarity=0.209 Sum_probs=52.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCc-CHHHHHHHHHHHhcC-------CCCCCccHH----
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPL-DLVKLQAEIAMALKL-------SLTEDEDKV---- 197 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~-------~~~~~~~~~---- 197 (359)
-..++|+|..|+|||||++.+++. . ..+.++++-+++.. ...++...++..-+. ...+.....
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~---~--~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRG---T--TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKG 236 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccC---C--CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHH
Confidence 467999999999999999999876 1 22455666666654 445666665544221 111111111
Q ss_pred -HHHHHHHHHHhc-CCcEEEEEecC
Q 038454 198 -SRARRLLGKLKA-KKKFVLILDDI 220 (359)
Q Consensus 198 -~~~~~l~~~l~~-~k~~LlVlDdv 220 (359)
...-.+.+++++ ++++||++||+
T Consensus 237 ~~~A~tiAEyfrd~G~~VLl~~Dsl 261 (444)
T PRK08972 237 CETATTIAEYFRDQGLNVLLLMDSL 261 (444)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcCh
Confidence 112234455533 59999999999
No 284
>PRK06217 hypothetical protein; Validated
Probab=96.57 E-value=0.0041 Score=52.72 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCc
Q 038454 132 KIGVWGMGGFGKTAIMRHINNRP 154 (359)
Q Consensus 132 vi~I~G~gGiGKTtLa~~v~~~~ 154 (359)
.|.|.|.+|+||||||+.+...+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999883
No 285
>PRK03839 putative kinase; Provisional
Probab=96.57 E-value=0.0017 Score=54.89 Aligned_cols=22 Identities=27% Similarity=0.525 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 038454 132 KIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 132 vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.|.|.|++|+||||+++.+++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999998
No 286
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.56 E-value=0.0045 Score=49.75 Aligned_cols=42 Identities=24% Similarity=0.235 Sum_probs=30.7
Q ss_pred EEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHH
Q 038454 133 IGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQA 180 (359)
Q Consensus 133 i~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 180 (359)
|.++|++|+|||+||+.+++.+ .. ...-+.++...+..++..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~---~~---~~~~i~~~~~~~~~dl~g 43 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL---GR---PVIRINCSSDTTEEDLIG 43 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH---TC---EEEEEE-TTTSTHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHh---hc---ceEEEEecccccccccee
Confidence 6899999999999999999882 11 234466777777776643
No 287
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=96.56 E-value=0.0089 Score=57.35 Aligned_cols=87 Identities=16% Similarity=0.253 Sum_probs=49.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHHHh-----cCCCCCCccHH------H
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAMAL-----KLSLTEDEDKV------S 198 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l-----~~~~~~~~~~~------~ 198 (359)
-..++|+|.+|+|||||++.++.. . ....++++..-....++.++....+... ..-........ .
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l-~---~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~ 240 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARA-D---AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPL 240 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC-C---CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHH
Confidence 357999999999999999988866 2 1223455544334445555544444332 11111111111 1
Q ss_pred HHHHHHHHHhc-CCcEEEEEecC
Q 038454 199 RARRLLGKLKA-KKKFVLILDDI 220 (359)
Q Consensus 199 ~~~~l~~~l~~-~k~~LlVlDdv 220 (359)
..-.+.+++++ ++++|+++||+
T Consensus 241 ~a~~iAEyfrd~G~~Vll~~Dsl 263 (450)
T PRK06002 241 TATAIAEYFRDRGENVLLIVDSV 263 (450)
T ss_pred HHHHHHHHHHHcCCCEEEeccch
Confidence 22234455543 59999999999
No 288
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.56 E-value=0.007 Score=50.81 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=22.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCc
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRP 154 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~ 154 (359)
..+|+|+|++|+||||+|+.++..+
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999883
No 289
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=96.55 E-value=0.02 Score=51.40 Aligned_cols=90 Identities=18% Similarity=0.213 Sum_probs=56.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccc--cCCCccEEEEEeCCCc-CHHHHHHHHHHHhcC-------CCCCCccH---
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEE--TNEFSDVIWVTVSQPL-DLVKLQAEIAMALKL-------SLTEDEDK--- 196 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~-------~~~~~~~~--- 196 (359)
-..++|.|.+|+|||+|+..+.++ ... +++-+.++++-+++.. ...++...+...=.. ...+....
T Consensus 69 GQR~gIfgg~GvGKt~L~~~i~~~-~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~ 147 (276)
T cd01135 69 GQKIPIFSGSGLPHNELAAQIARQ-AGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERI 147 (276)
T ss_pred CCEEEeecCCCCChhHHHHHHHHh-hhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHH
Confidence 356899999999999999999887 321 1234678888887764 456666666553211 11111111
Q ss_pred --HHHHHHHHHHHhc--CCcEEEEEecC
Q 038454 197 --VSRARRLLGKLKA--KKKFVLILDDI 220 (359)
Q Consensus 197 --~~~~~~l~~~l~~--~k~~LlVlDdv 220 (359)
....-.+.++++. ++++|+++||+
T Consensus 148 ~a~~~a~aiAEyfrd~~g~~VLl~~D~l 175 (276)
T cd01135 148 ITPRMALTTAEYLAYEKGKHVLVILTDM 175 (276)
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEEcCh
Confidence 1122334566654 38999999998
No 290
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.046 Score=53.97 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=22.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..+.+.++|++|.|||.||+++++.
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~ 299 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALE 299 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhh
Confidence 4568999999999999999999996
No 291
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.54 E-value=0.016 Score=53.93 Aligned_cols=26 Identities=23% Similarity=0.443 Sum_probs=24.1
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 128 DKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 128 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..+..++|||++|+|||.+|+.+++.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 45788999999999999999999998
No 292
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.53 E-value=0.025 Score=47.52 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=20.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHH
Q 038454 130 VTKIGVWGMGGFGKTAIMRHIN 151 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~ 151 (359)
-.+++|+|+.|+|||||.+.+.
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999886
No 293
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.52 E-value=0.013 Score=52.75 Aligned_cols=27 Identities=19% Similarity=0.287 Sum_probs=23.9
Q ss_pred CCCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 127 GDKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 127 ~~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
++....++|+|+.|+|||||.+.++..
T Consensus 108 ~~~~~~~~i~g~~g~GKttl~~~l~~~ 134 (270)
T TIGR02858 108 NNRVLNTLIISPPQCGKTTLLRDLARI 134 (270)
T ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhCc
Confidence 445678999999999999999999987
No 294
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.52 E-value=0.01 Score=58.23 Aligned_cols=86 Identities=14% Similarity=0.156 Sum_probs=55.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHHHhcCCC---------------CCC
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAMALKLSL---------------TED 193 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~---------------~~~ 193 (359)
.-.++.|.|.+|+|||||+.+++... ...-..+++++..+ +..++.... +.++.+. +..
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~---~~~ge~~~y~s~eE--s~~~i~~~~-~~lg~~~~~~~~~g~l~~~~~~p~~ 335 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENA---CANKERAILFAYEE--SRAQLLRNA-YSWGIDFEEMEQQGLLKIICAYPES 335 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH---HHCCCeEEEEEeeC--CHHHHHHHH-HHcCCChHHHhhCCcEEEEEccccc
Confidence 34789999999999999999998872 12223467776554 444444443 3444321 112
Q ss_pred ccHHHHHHHHHHHHhcCCcEEEEEecC
Q 038454 194 EDKVSRARRLLGKLKAKKKFVLILDDI 220 (359)
Q Consensus 194 ~~~~~~~~~l~~~l~~~k~~LlVlDdv 220 (359)
...++.+..+.+.+...+.-++|+|.+
T Consensus 336 ~~~~~~~~~i~~~i~~~~~~~vvIDsi 362 (484)
T TIGR02655 336 AGLEDHLQIIKSEIADFKPARIAIDSL 362 (484)
T ss_pred CChHHHHHHHHHHHHHcCCCEEEEcCH
Confidence 334667777777776646668899987
No 295
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.52 E-value=0.024 Score=47.71 Aligned_cols=24 Identities=25% Similarity=0.487 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
-.+++|.|..|+|||||++.++..
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~ 51 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGD 51 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 368999999999999999999887
No 296
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.52 E-value=0.013 Score=53.22 Aligned_cols=26 Identities=19% Similarity=0.170 Sum_probs=22.5
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 128 DKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 128 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..+.+|+|.|..|+||||+|+.+..-
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~l 85 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQAL 85 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999877654
No 297
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=96.46 E-value=0.0056 Score=57.95 Aligned_cols=46 Identities=26% Similarity=0.331 Sum_probs=33.4
Q ss_pred cccccccchHHHHHHHHHHhcCC--------------CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 106 TTTLVGENTKKIVKKVWEDLMGD--------------KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l~~~--------------~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
...++|.+. .+..+...+.+. .++-|.++|++|+|||++|+.++..
T Consensus 11 d~~IiGQ~e--Akk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~ 70 (441)
T TIGR00390 11 DKYIIGQDN--AKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKL 70 (441)
T ss_pred hhhccCHHH--HHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 356888865 555544333221 2467999999999999999999988
No 298
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.46 E-value=0.064 Score=53.50 Aligned_cols=47 Identities=17% Similarity=0.278 Sum_probs=34.3
Q ss_pred CcccccccchHHHHHHHHHHhcC--CCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 105 PTTTLVGENTKKIVKKVWEDLMG--DKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 105 ~~~~~vGr~~~~~~~~l~~~l~~--~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
....++|.+. .+.++.+.+.. .....|.|+|..|+|||++|+.+++.
T Consensus 194 ~~~~liG~s~--~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~ 242 (534)
T TIGR01817 194 KEDGIIGKSP--AMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYL 242 (534)
T ss_pred ccCceEECCH--HHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHh
Confidence 3467899987 55555544421 22345789999999999999999887
No 299
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.45 E-value=0.0082 Score=51.54 Aligned_cols=26 Identities=19% Similarity=0.311 Sum_probs=23.6
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 128 DKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 128 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
....+|+|+|++|+||||||+.+...
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~ 47 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEA 47 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45679999999999999999999987
No 300
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=96.45 E-value=0.0053 Score=61.81 Aligned_cols=76 Identities=11% Similarity=0.116 Sum_probs=55.8
Q ss_pred cccccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHHH
Q 038454 106 TTTLVGENTKKIVKKVWEDLMGDKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAMA 185 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~ 185 (359)
-+.++|.+. .++.|...+..+ +.+.++|.+|+||||+|+.+++.+ ....++..+|..- ...+...+++.++.+
T Consensus 30 ~~~vigq~~--a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l--~~~~~~~~~~~~n-p~~~~~~~~~~v~~~ 102 (637)
T PRK13765 30 IDQVIGQEH--AVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELL--PKEELQDILVYPN-PEDPNNPKIRTVPAG 102 (637)
T ss_pred HHHcCChHH--HHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHc--ChHhHHHheEeeC-CCcchHHHHHHHHHh
Confidence 457888755 677776666655 479999999999999999999874 3344677788655 344677777877776
Q ss_pred hcC
Q 038454 186 LKL 188 (359)
Q Consensus 186 l~~ 188 (359)
++.
T Consensus 103 ~G~ 105 (637)
T PRK13765 103 KGK 105 (637)
T ss_pred cCH
Confidence 654
No 301
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.44 E-value=0.0026 Score=53.15 Aligned_cols=24 Identities=33% Similarity=0.425 Sum_probs=22.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
...|.|+|++|+||||+|+.++..
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~ 27 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKR 27 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999998
No 302
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.42 E-value=0.033 Score=46.84 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
-.+++|+|..|+|||||++.+..-
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl 48 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQ 48 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcC
Confidence 368999999999999999999876
No 303
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.42 E-value=0.0038 Score=50.43 Aligned_cols=39 Identities=18% Similarity=0.267 Sum_probs=28.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQ 171 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~ 171 (359)
++|.|+|..|+|||||++.+.+.+ ....+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l--~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL--KRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH--HHTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH--hHcCCceEEEEEccC
Confidence 579999999999999999999984 345566555665544
No 304
>PRK08149 ATP synthase SpaL; Validated
Probab=96.42 E-value=0.016 Score=55.44 Aligned_cols=87 Identities=14% Similarity=0.258 Sum_probs=51.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCC-CcCHHHHHHHHHHHhcC-------CCCCCccH----
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQ-PLDLVKLQAEIAMALKL-------SLTEDEDK---- 196 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~-------~~~~~~~~---- 196 (359)
.-..++|+|.+|+|||||+..+++. . .-+.+++..+.. ..+..++....+..... ...+....
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~-~----~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~ 224 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEH-S----EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCN 224 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcC-C----CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHh
Confidence 3467999999999999999999876 2 223333444443 33566666666654321 11111111
Q ss_pred -HHHHHHHHHHHhc-CCcEEEEEecC
Q 038454 197 -VSRARRLLGKLKA-KKKFVLILDDI 220 (359)
Q Consensus 197 -~~~~~~l~~~l~~-~k~~LlVlDdv 220 (359)
......+.+++++ ++++||++||+
T Consensus 225 a~~~a~tiAE~fr~~G~~Vll~~Dsl 250 (428)
T PRK08149 225 AALVATTVAEYFRDQGKRVVLFIDSM 250 (428)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEccch
Confidence 1222334455533 59999999999
No 305
>PRK04040 adenylate kinase; Provisional
Probab=96.41 E-value=0.0025 Score=54.31 Aligned_cols=24 Identities=25% Similarity=0.452 Sum_probs=22.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..+|+|+|++|+||||+++.+.+.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~ 25 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEK 25 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH
Confidence 358999999999999999999988
No 306
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.41 E-value=0.0028 Score=54.57 Aligned_cols=26 Identities=35% Similarity=0.558 Sum_probs=23.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcCc
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNRP 154 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 154 (359)
.+.+|+|.|.+|+||||+|+.++..+
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~ 32 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQL 32 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999999984
No 307
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.41 E-value=0.023 Score=50.12 Aligned_cols=70 Identities=24% Similarity=0.378 Sum_probs=42.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHh
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAMALKLSLTEDEDKVSRARRLLGKLK 208 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 208 (359)
.++=|.++|++|.|||-+|++|+|+ ....| +.|-.. ++.+.-- .......+.+.+--+
T Consensus 210 ppkgvllygppgtgktl~aravanr---tdacf-----irvigs--------elvqkyv------gegarmvrelf~mar 267 (435)
T KOG0729|consen 210 PPKGVLLYGPPGTGKTLCARAVANR---TDACF-----IRVIGS--------ELVQKYV------GEGARMVRELFEMAR 267 (435)
T ss_pred CCCceEEeCCCCCchhHHHHHHhcc---cCceE-----EeehhH--------HHHHHHh------hhhHHHHHHHHHHhc
Confidence 4677999999999999999999999 33333 332111 1111100 112234445555555
Q ss_pred cCCcEEEEEecC
Q 038454 209 AKKKFVLILDDI 220 (359)
Q Consensus 209 ~~k~~LlVlDdv 220 (359)
.+|-+++.+|.+
T Consensus 268 tkkaciiffdei 279 (435)
T KOG0729|consen 268 TKKACIIFFDEI 279 (435)
T ss_pred ccceEEEEeecc
Confidence 557788888888
No 308
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=96.39 E-value=0.019 Score=54.95 Aligned_cols=87 Identities=13% Similarity=0.237 Sum_probs=49.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHHHhcC-------CCCCCccHHH----
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAMALKL-------SLTEDEDKVS---- 198 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~-------~~~~~~~~~~---- 198 (359)
-..++|+|..|+|||||++.+... . . ....++...-.+.....++....+..-+. ...+......
T Consensus 140 Gq~i~I~G~sG~GKTtLl~~I~~~-~--~-~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~ 215 (418)
T TIGR03498 140 GQRLGIFAGSGVGKSTLLSMLARN-T--D-ADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAA 215 (418)
T ss_pred CcEEEEECCCCCChHHHHHHHhCC-C--C-CCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHH
Confidence 467999999999999999988877 2 2 12223332223334455566655443221 1111111111
Q ss_pred -HHHHHHHHHhc-CCcEEEEEecC
Q 038454 199 -RARRLLGKLKA-KKKFVLILDDI 220 (359)
Q Consensus 199 -~~~~l~~~l~~-~k~~LlVlDdv 220 (359)
..-.+.+++++ ++++||++||+
T Consensus 216 ~~a~~iAEyfrd~G~~Vll~~Dsl 239 (418)
T TIGR03498 216 YTATAIAEYFRDQGKDVLLLMDSV 239 (418)
T ss_pred HHHHHHHHHHHHcCCCEEEeccch
Confidence 22334555543 48999999999
No 309
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.39 E-value=0.51 Score=42.20 Aligned_cols=179 Identities=15% Similarity=0.218 Sum_probs=100.6
Q ss_pred HHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHcCccc---ccCCCccEEEEEeCCC---------------------
Q 038454 117 IVKKVWEDLMGDKVTKIGVWGMGGFGKTAIMRHINNRPQE---ETNEFSDVIWVTVSQP--------------------- 172 (359)
Q Consensus 117 ~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~~F~~~~wv~~~~~--------------------- 172 (359)
....+.+....+..+-..++|++|.||-|.+..+.+++-- .+-.-+...|.+-+..
T Consensus 21 ~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSDaG 100 (351)
T KOG2035|consen 21 LANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSDAG 100 (351)
T ss_pred HHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhhcC
Confidence 5556666666677889999999999999988877776311 0111223444432221
Q ss_pred cCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhcCCcE-EEEEecC------------------CCC-eEEEe----
Q 038454 173 LDLVKLQAEIAMALKLSLTEDEDKVSRARRLLGKLKAKKKF-VLILDDI------------------DNH-TFCWG---- 228 (359)
Q Consensus 173 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~-LlVlDdv------------------~~g-~ilvT---- 228 (359)
..-.-+.++|+.......+- ...+.+.| ++|+..+ .+. ++|+.
T Consensus 101 ~~DRvViQellKevAQt~qi-------------e~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlIl~cns~ 167 (351)
T KOG2035|consen 101 NYDRVVIQELLKEVAQTQQI-------------ETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLILVCNST 167 (351)
T ss_pred cccHHHHHHHHHHHHhhcch-------------hhccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEEEEecCc
Confidence 11223344444444322110 00011222 2233222 222 44443
Q ss_pred ec-----ccceeeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHHHHhhcC----------
Q 038454 229 LR-----SMGCEEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTVVGCMRG---------- 293 (359)
Q Consensus 229 tr-----~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~L~~---------- 293 (359)
|| ...|-.+.++..+++|....+.+.+-..+...+ .+.+.+|+++++|.---...+...++-
T Consensus 168 SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp---~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~~~a~~~ 244 (351)
T KOG2035|consen 168 SRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP---KELLKRIAEKSNRNLRRALLMLEAVRVNNEPFTANSQ 244 (351)
T ss_pred ccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc---HHHHHHHHHHhcccHHHHHHHHHHHHhccccccccCC
Confidence 33 334456899999999999999988755544333 688999999998865433333333221
Q ss_pred CCChhHHHHHHHHHhhcc
Q 038454 294 VDEIHEWRNALNELRGLV 311 (359)
Q Consensus 294 ~~~~~~w~~~l~~~~~~~ 311 (359)
.-...+|.-++.+.....
T Consensus 245 ~i~~~dWe~~i~e~a~~i 262 (351)
T KOG2035|consen 245 VIPKPDWEIYIQEIARVI 262 (351)
T ss_pred CCCCccHHHHHHHHHHHH
Confidence 123568999988876543
No 310
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.38 E-value=0.0044 Score=59.82 Aligned_cols=43 Identities=14% Similarity=0.196 Sum_probs=36.7
Q ss_pred ccccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 107 TTLVGENTKKIVKKVWEDLMGDKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 107 ~~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..++|++. .++.+...+..+ .-|.|.|++|+|||+||+.+...
T Consensus 20 ~~i~gre~--vI~lll~aalag--~hVLL~GpPGTGKT~LAraLa~~ 62 (498)
T PRK13531 20 KGLYERSH--AIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFA 62 (498)
T ss_pred hhccCcHH--HHHHHHHHHccC--CCEEEECCCChhHHHHHHHHHHH
Confidence 46899966 888888888776 45899999999999999999987
No 311
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.38 E-value=0.093 Score=50.95 Aligned_cols=39 Identities=21% Similarity=0.233 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhc-----CC--CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 115 KKIVKKVWEDLM-----GD--KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 115 ~~~~~~l~~~l~-----~~--~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
++-+.++..||. .+ +.+++.|.|++|+||||.++.++..
T Consensus 88 kkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLske 133 (634)
T KOG1970|consen 88 KKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKE 133 (634)
T ss_pred HHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHh
Confidence 445778888887 34 4569999999999999999988876
No 312
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.38 E-value=0.017 Score=47.50 Aligned_cols=23 Identities=30% Similarity=0.268 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..|-|++..|.||||+|...+-+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~r 25 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALR 25 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 57889999999999999988876
No 313
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.37 E-value=0.015 Score=48.25 Aligned_cols=82 Identities=16% Similarity=0.119 Sum_probs=45.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCC--CcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHH
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQ--PLDLVKLQAEIAMALKLSLTEDEDKVSRARRLLGKL 207 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~--~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 207 (359)
-.+++|.|..|.|||||.+.++... ....+.+++.-.. ..+..+.. -..++.-. +-+..+...-.+.+.+
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~----~~~~G~v~~~g~~~~~~~~~~~~---~~~i~~~~-qLS~G~~qrl~laral 97 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLY----KPDSGEILVDGKEVSFASPRDAR---RAGIAMVY-QLSVGERQMVEIARAL 97 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC----CCCCeEEEECCEECCcCCHHHHH---hcCeEEEE-ecCHHHHHHHHHHHHH
Confidence 3689999999999999999998772 2334445543211 11111111 11111111 1223334444555666
Q ss_pred hcCCcEEEEEecC
Q 038454 208 KAKKKFVLILDDI 220 (359)
Q Consensus 208 ~~~k~~LlVlDdv 220 (359)
.. .+-++++|+-
T Consensus 98 ~~-~p~illlDEP 109 (163)
T cd03216 98 AR-NARLLILDEP 109 (163)
T ss_pred hc-CCCEEEEECC
Confidence 66 7788888986
No 314
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.37 E-value=0.021 Score=54.60 Aligned_cols=87 Identities=17% Similarity=0.174 Sum_probs=46.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCC-CcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHh
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQ-PLDLVKLQAEIAMALKLSLTEDEDKVSRARRLLGKLK 208 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 208 (359)
..+++++|+.|+||||++..++..+ ......+.+.++.... .....+.+....+.++.+.....+..+....+ ..+.
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~-~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al-~~l~ 268 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARA-VIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLML-HELR 268 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHH-HHhc
Confidence 4799999999999999999887652 1112223344444322 22344445556666665543333333333222 2233
Q ss_pred cCCcEEEEEecC
Q 038454 209 AKKKFVLILDDI 220 (359)
Q Consensus 209 ~~k~~LlVlDdv 220 (359)
+ .-++++|-.
T Consensus 269 ~--~d~VLIDTa 278 (420)
T PRK14721 269 G--KHMVLIDTV 278 (420)
T ss_pred C--CCEEEecCC
Confidence 2 334555554
No 315
>PRK00625 shikimate kinase; Provisional
Probab=96.36 E-value=0.0025 Score=53.44 Aligned_cols=22 Identities=23% Similarity=0.316 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 038454 132 KIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 132 vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.|.++|++|+||||+++.++++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~ 23 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKF 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999987
No 316
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.35 E-value=0.0025 Score=54.73 Aligned_cols=22 Identities=36% Similarity=0.531 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 038454 132 KIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 132 vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
+|+|.|.+|+|||||++.+...
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999876
No 317
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.35 E-value=0.04 Score=51.21 Aligned_cols=23 Identities=22% Similarity=0.327 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
+-|.++|++|.|||-||++|+..
T Consensus 246 kgvLm~GPPGTGKTlLAKAvATE 268 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLAKAVATE 268 (491)
T ss_pred ceeeeeCCCCCcHHHHHHHHHHh
Confidence 46889999999999999999998
No 318
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=96.34 E-value=0.011 Score=53.03 Aligned_cols=86 Identities=19% Similarity=0.189 Sum_probs=49.4
Q ss_pred ccEEEEEcCCCCcHHHHH-HHHHcCcccccCCCccE-EEEEeCCCc-CHHHHHHHHHHHhcC-------CCCCCccHHH-
Q 038454 130 VTKIGVWGMGGFGKTAIM-RHINNRPQEETNEFSDV-IWVTVSQPL-DLVKLQAEIAMALKL-------SLTEDEDKVS- 198 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~~F~~~-~wv~~~~~~-~~~~~~~~i~~~l~~-------~~~~~~~~~~- 198 (359)
-..++|.|.+|+|||+|| ..+.+. . .-+.+ +++-+++.. ...++.+.+...-.. ...+......
T Consensus 69 GQr~~Ifg~~g~GKt~L~l~~i~~~---~--~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 143 (274)
T cd01132 69 GQRELIIGDRQTGKTAIAIDTIINQ---K--GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQY 143 (274)
T ss_pred CCEEEeeCCCCCCccHHHHHHHHHh---c--CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHH
Confidence 357999999999999996 556554 2 22333 666666654 456666666543211 1111111111
Q ss_pred ----HHHHHHHHHhc-CCcEEEEEecC
Q 038454 199 ----RARRLLGKLKA-KKKFVLILDDI 220 (359)
Q Consensus 199 ----~~~~l~~~l~~-~k~~LlVlDdv 220 (359)
..-.+.+++.. ++.+||++||+
T Consensus 144 ~a~~~a~aiAE~fr~~G~~Vlvl~Dsl 170 (274)
T cd01132 144 LAPYTGCAMGEYFMDNGKHALIIYDDL 170 (274)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEcCh
Confidence 12333444443 49999999998
No 319
>PRK05439 pantothenate kinase; Provisional
Probab=96.34 E-value=0.022 Score=52.24 Aligned_cols=26 Identities=23% Similarity=0.254 Sum_probs=23.2
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 128 DKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 128 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
+.+-+|+|.|.+|+||||+|+.+...
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~ 109 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQAL 109 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45679999999999999999998875
No 320
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.15 Score=45.00 Aligned_cols=39 Identities=21% Similarity=0.296 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhcC-------------CCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 115 KKIVKKVWEDLMG-------------DKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 115 ~~~~~~l~~~l~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
++.+++|++.+.- ..++=+..+|++|.|||-+|++.+.+
T Consensus 177 dkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaq 228 (424)
T KOG0652|consen 177 DKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQ 228 (424)
T ss_pred HHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHh
Confidence 3467777766521 13567899999999999999998877
No 321
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.33 E-value=0.029 Score=46.94 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
-.+++|+|..|.|||||.+.++..
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~ 51 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGL 51 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 368999999999999999999876
No 322
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=96.33 E-value=0.0047 Score=57.57 Aligned_cols=49 Identities=20% Similarity=0.419 Sum_probs=42.0
Q ss_pred cCCcccccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 103 ILPTTTLVGENTKKIVKKVWEDLMGDKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 103 ~~~~~~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..|-+.+||.+. .+..|+..+.++.+.-|.|.|..|+||||+|+.+++-
T Consensus 13 ~~pf~~ivGq~~--~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~ 61 (350)
T CHL00081 13 VFPFTAIVGQEE--MKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDL 61 (350)
T ss_pred CCCHHHHhChHH--HHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHH
Confidence 455678999966 8888888888888888889999999999999999765
No 323
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.33 E-value=0.032 Score=46.69 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
-.+++|+|..|.|||||++.++..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~ 49 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGL 49 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999886
No 324
>PRK05922 type III secretion system ATPase; Validated
Probab=96.32 E-value=0.022 Score=54.58 Aligned_cols=87 Identities=14% Similarity=0.233 Sum_probs=50.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCC-CcCHHHHHHHHHHHhcCCC-------CCCccH----
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQ-PLDLVKLQAEIAMALKLSL-------TEDEDK---- 196 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~-------~~~~~~---- 196 (359)
.-..++|+|..|+|||||.+.+.+. . ..+...++-++. .......+.+....+.... .+....
T Consensus 156 ~GqrigI~G~nG~GKSTLL~~Ia~~-~----~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~ 230 (434)
T PRK05922 156 KGQRIGVFSEPGSGKSSLLSTIAKG-S----KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVI 230 (434)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcc-C----CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHH
Confidence 3457999999999999999999877 2 123333333333 2334455555544332211 111111
Q ss_pred -HHHHHHHHHHHhc-CCcEEEEEecC
Q 038454 197 -VSRARRLLGKLKA-KKKFVLILDDI 220 (359)
Q Consensus 197 -~~~~~~l~~~l~~-~k~~LlVlDdv 220 (359)
....-.+.+++++ ++++||++||+
T Consensus 231 a~~~a~tiAEyfrd~G~~VLl~~Dsl 256 (434)
T PRK05922 231 AGRAAMTIAEYFRDQGHRVLFIMDSL 256 (434)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccch
Confidence 1122334555543 59999999999
No 325
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.32 E-value=0.084 Score=52.38 Aligned_cols=48 Identities=19% Similarity=0.249 Sum_probs=40.5
Q ss_pred cccccccch-HHHHHHHHHHhcCCC---------ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 106 TTTLVGENT-KKIVKKVWEDLMGDK---------VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 106 ~~~~vGr~~-~~~~~~l~~~l~~~~---------~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
....-|.+. ++++.++++.|.++. ++=+.++|++|.|||.||++++..
T Consensus 149 F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgE 206 (596)
T COG0465 149 FADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGE 206 (596)
T ss_pred hhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcc
Confidence 456778766 778899999998753 456899999999999999999998
No 326
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.31 E-value=0.014 Score=54.70 Aligned_cols=84 Identities=19% Similarity=0.256 Sum_probs=53.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHHHhcCCCCC-CccHHHHHHHHHHHHh
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAMALKLSLTE-DEDKVSRARRLLGKLK 208 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l~ 208 (359)
-.+|.|-|-+|+|||||..+++.++ ...- .++||+--+.. .++ +--+..|+...+. .--.+...+.+.+.+.
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~~l---A~~~-~vLYVsGEES~--~Qi-klRA~RL~~~~~~l~l~aEt~~e~I~~~l~ 165 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAARL---AKRG-KVLYVSGEESL--QQI-KLRADRLGLPTNNLYLLAETNLEDIIAELE 165 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHHHHH---HhcC-cEEEEeCCcCH--HHH-HHHHHHhCCCccceEEehhcCHHHHHHHHH
Confidence 4689999999999999999999984 2222 68888755442 222 2334556543221 1112223344445555
Q ss_pred cCCcEEEEEecC
Q 038454 209 AKKKFVLILDDI 220 (359)
Q Consensus 209 ~~k~~LlVlDdv 220 (359)
..++-|+|+|.+
T Consensus 166 ~~~p~lvVIDSI 177 (456)
T COG1066 166 QEKPDLVVIDSI 177 (456)
T ss_pred hcCCCEEEEecc
Confidence 558999999999
No 327
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.31 E-value=0.034 Score=56.88 Aligned_cols=58 Identities=14% Similarity=0.139 Sum_probs=34.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCC-CcCHHHHHHHHHHHhcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQ-PLDLVKLQAEIAMALKL 188 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~ 188 (359)
..+++++|+.|+||||++..++..+.. ......+..++... .....+.++...+.++.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~-~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gv 243 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVA-REGADQLALLTTDSFRIGALEQLRIYGRILGV 243 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHH-HcCCCeEEEecCcccchHHHHHHHHHHHhCCC
Confidence 469999999999999999999877311 11112344544322 11233444555555554
No 328
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=96.30 E-value=0.16 Score=45.64 Aligned_cols=103 Identities=17% Similarity=0.236 Sum_probs=65.5
Q ss_pred CcccccccchHHHHHHHHHHhcC--CCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHH
Q 038454 105 PTTTLVGENTKKIVKKVWEDLMG--DKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEI 182 (359)
Q Consensus 105 ~~~~~vGr~~~~~~~~l~~~l~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 182 (359)
..+.|+|-.. ..+++.++.. ..-+.+.++|+.|+|||+-++.+++.. +....+..+..++...++..+
T Consensus 70 ~~~~~l~tkt---~r~~~~~~~~A~k~g~l~~vyg~~g~gKt~a~~~y~~s~-------p~~~l~~~~p~~~a~~~i~~i 139 (297)
T COG2842 70 LAPDFLETKT---VRRIFFRTRPASKTGSLVVVYGYAGLGKTQAAKNYAPSN-------PNALLIEADPSYTALVLILII 139 (297)
T ss_pred ccccccccch---hHhHhhhhhhhhhcCceEEEeccccchhHHHHHhhcccC-------ccceeecCChhhHHHHHHHHH
Confidence 3566777654 2233333321 122489999999999999999999871 223334556666666666666
Q ss_pred HHHhcCCCCCCccHHHHHHHHHHHHhcCCcEEEEEecC
Q 038454 183 AMALKLSLTEDEDKVSRARRLLGKLKAKKKFVLILDDI 220 (359)
Q Consensus 183 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv 220 (359)
+....... ..........+...+.+ ..-++++|+.
T Consensus 140 ~~~~~~~~--~~~~~d~~~~~~~~l~~-~~~~iivDEA 174 (297)
T COG2842 140 CAAAFGAT--DGTINDLTERLMIRLRD-TVRLIIVDEA 174 (297)
T ss_pred HHHHhccc--chhHHHHHHHHHHHHcc-Ccceeeeehh
Confidence 66555432 23455566666677777 7788888887
No 329
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=96.30 E-value=0.033 Score=53.46 Aligned_cols=87 Identities=8% Similarity=0.196 Sum_probs=52.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCc-CHHHHHHHHHHHhcC-------CCCCCccH----
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPL-DLVKLQAEIAMALKL-------SLTEDEDK---- 196 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~-------~~~~~~~~---- 196 (359)
.-..++|+|..|+|||||++.+++. . ..+.++++-+++.. ...++....+..-+. ...+....
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~-~----~~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~ 231 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARN-A----DADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQ 231 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhc-c----CCCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHH
Confidence 3468999999999999999999987 2 12345556666554 344555555443221 11111111
Q ss_pred -HHHHHHHHHHHhc-CCcEEEEEecC
Q 038454 197 -VSRARRLLGKLKA-KKKFVLILDDI 220 (359)
Q Consensus 197 -~~~~~~l~~~l~~-~k~~LlVlDdv 220 (359)
....-.+.+++++ ++++|+++||+
T Consensus 232 a~~~a~tiAEyfrd~G~~Vll~~Dsl 257 (442)
T PRK08927 232 AAYLTLAIAEYFRDQGKDVLCLMDSV 257 (442)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCc
Confidence 1112234455533 59999999999
No 330
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.30 E-value=0.0024 Score=49.03 Aligned_cols=22 Identities=23% Similarity=0.534 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHcCc
Q 038454 133 IGVWGMGGFGKTAIMRHINNRP 154 (359)
Q Consensus 133 i~I~G~gGiGKTtLa~~v~~~~ 154 (359)
|-|+|.+|+|||+||..++..+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999988773
No 331
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=96.30 E-value=0.006 Score=56.75 Aligned_cols=47 Identities=23% Similarity=0.408 Sum_probs=38.7
Q ss_pred CcccccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 105 PTTTLVGENTKKIVKKVWEDLMGDKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 105 ~~~~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
|-+.+||.+. .+..++-.+.++...-+.|.|.+|+|||||++.+..-
T Consensus 2 pf~~ivgq~~--~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~ 48 (337)
T TIGR02030 2 PFTAIVGQDE--MKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAAL 48 (337)
T ss_pred CccccccHHH--HHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHh
Confidence 3467899865 7778777777776777889999999999999999865
No 332
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.30 E-value=0.0052 Score=55.48 Aligned_cols=56 Identities=18% Similarity=0.287 Sum_probs=34.0
Q ss_pred HHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHH
Q 038454 119 KKVWEDLMGDKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKL 178 (359)
Q Consensus 119 ~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~ 178 (359)
..+++.+...+ +-+.++|++|+|||++++.....+ ....| ...-++.+...+...+
T Consensus 23 ~~ll~~l~~~~-~pvLl~G~~GtGKT~li~~~l~~l--~~~~~-~~~~~~~s~~Tts~~~ 78 (272)
T PF12775_consen 23 SYLLDLLLSNG-RPVLLVGPSGTGKTSLIQNFLSSL--DSDKY-LVITINFSAQTTSNQL 78 (272)
T ss_dssp HHHHHHHHHCT-EEEEEESSTTSSHHHHHHHHHHCS--TTCCE-EEEEEES-TTHHHHHH
T ss_pred HHHHHHHHHcC-CcEEEECCCCCchhHHHHhhhccC--Ccccc-ceeEeeccCCCCHHHH
Confidence 34555554443 457999999999999999988763 12222 2334555555444443
No 333
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.29 E-value=0.0034 Score=52.90 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.+++|+|++|+|||||++.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999886
No 334
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.29 E-value=0.0033 Score=52.86 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
++|.+.|++|+||||+|+.+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999887
No 335
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.28 E-value=0.038 Score=51.94 Aligned_cols=99 Identities=18% Similarity=0.200 Sum_probs=57.9
Q ss_pred HHHHHHHhcCC----CccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCC-CcCHHHHHHHHHHHhcCCCCC
Q 038454 118 VKKVWEDLMGD----KVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQ-PLDLVKLQAEIAMALKLSLTE 192 (359)
Q Consensus 118 ~~~l~~~l~~~----~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~ 192 (359)
...+..++..+ +.++|.++|+.|+||||-...++.++. ....=..+..++... .-...+-++.-++-++.+...
T Consensus 187 l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~~-~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~v 265 (407)
T COG1419 187 LRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAARYV-MLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEV 265 (407)
T ss_pred HHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHHHH-hhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEE
Confidence 34444555444 478999999999999754444444422 122233466776544 335666777778888877655
Q ss_pred CccHHHHHHHHHHHHhcCCcEEEEEecC
Q 038454 193 DEDKVSRARRLLGKLKAKKKFVLILDDI 220 (359)
Q Consensus 193 ~~~~~~~~~~l~~~l~~~k~~LlVlDdv 220 (359)
..+..+....+.. +.. . =++.+|-+
T Consensus 266 v~~~~el~~ai~~-l~~-~-d~ILVDTa 290 (407)
T COG1419 266 VYSPKELAEAIEA-LRD-C-DVILVDTA 290 (407)
T ss_pred ecCHHHHHHHHHH-hhc-C-CEEEEeCC
Confidence 5555555554433 332 2 34555655
No 336
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=96.28 E-value=0.025 Score=54.15 Aligned_cols=87 Identities=13% Similarity=0.236 Sum_probs=51.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCC-cCHHHHHHHHHHHhcC-------CCCCCccHHH--
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQP-LDLVKLQAEIAMALKL-------SLTEDEDKVS-- 198 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~-------~~~~~~~~~~-- 198 (359)
.-..++|+|..|+|||||++.+.+. . +.+..+++.+++. ..+.+++.+....=.. ...+......
T Consensus 154 ~GqrigI~G~sG~GKSTLL~~I~~~-~----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~ 228 (433)
T PRK07594 154 EGQRVGIFSAPGVGKSTLLAMLCNA-P----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVR 228 (433)
T ss_pred CCCEEEEECCCCCCccHHHHHhcCC-C----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHH
Confidence 3468999999999999999988876 2 2344555555543 3454655554331100 1111111111
Q ss_pred ---HHHHHHHHHhc-CCcEEEEEecC
Q 038454 199 ---RARRLLGKLKA-KKKFVLILDDI 220 (359)
Q Consensus 199 ---~~~~l~~~l~~-~k~~LlVlDdv 220 (359)
..-.+.+++++ ++++||++||+
T Consensus 229 a~~~a~tiAEyfrd~G~~VLl~~Dsl 254 (433)
T PRK07594 229 ALFVATTIAEFFRDNGKRVVLLADSL 254 (433)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCH
Confidence 12234455543 58999999999
No 337
>PRK06936 type III secretion system ATPase; Provisional
Probab=96.27 E-value=0.03 Score=53.64 Aligned_cols=87 Identities=11% Similarity=0.224 Sum_probs=53.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCc-CHHHHHHHHHHHhcC-------CCCCCccHH---
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPL-DLVKLQAEIAMALKL-------SLTEDEDKV--- 197 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~-------~~~~~~~~~--- 197 (359)
.-..++|.|..|+|||||...+++. . .-+.++++-+++.. ...++....+..-+. ...+.....
T Consensus 161 ~Gq~~~I~G~sG~GKStLl~~Ia~~-~----~~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (439)
T PRK06936 161 EGQRMGIFAAAGGGKSTLLASLIRS-A----EVDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAK 235 (439)
T ss_pred CCCEEEEECCCCCChHHHHHHHhcC-C----CCCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHH
Confidence 3468999999999999999999988 2 22456777776653 455555444332111 111111111
Q ss_pred --HHHHHHHHHHhc-CCcEEEEEecC
Q 038454 198 --SRARRLLGKLKA-KKKFVLILDDI 220 (359)
Q Consensus 198 --~~~~~l~~~l~~-~k~~LlVlDdv 220 (359)
...-.+.+++++ ++++||++||+
T Consensus 236 a~~~a~tiAEyfrd~G~~Vll~~Dsl 261 (439)
T PRK06936 236 AGFVATSIAEYFRDQGKRVLLLMDSV 261 (439)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccch
Confidence 112234455533 59999999998
No 338
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.27 E-value=0.048 Score=45.35 Aligned_cols=85 Identities=15% Similarity=0.150 Sum_probs=46.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCC--Cc---cEEEEEeCCCcCH--HHHHHHHHHHhcCCCCCCccHHHHHHH
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNE--FS---DVIWVTVSQPLDL--VKLQAEIAMALKLSLTEDEDKVSRARR 202 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~--F~---~~~wv~~~~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~~ 202 (359)
-.+++|+|..|.|||||++.+........+. ++ .+.++ .+.... ..+...+... ....-+......-.
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~--~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~rv~ 101 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFL--PQRPYLPLGTLREQLIYP---WDDVLSGGEQQRLA 101 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEE--CCCCccccccHHHHhhcc---CCCCCCHHHHHHHH
Confidence 3689999999999999999998873211111 11 12222 222111 1222222110 11222334444455
Q ss_pred HHHHHhcCCcEEEEEecC
Q 038454 203 LLGKLKAKKKFVLILDDI 220 (359)
Q Consensus 203 l~~~l~~~k~~LlVlDdv 220 (359)
+.+.+.. ++-++++|+-
T Consensus 102 laral~~-~p~~lllDEP 118 (166)
T cd03223 102 FARLLLH-KPKFVFLDEA 118 (166)
T ss_pred HHHHHHc-CCCEEEEECC
Confidence 6666666 7788899986
No 339
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.26 E-value=0.037 Score=48.97 Aligned_cols=49 Identities=16% Similarity=0.164 Sum_probs=33.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHH
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIA 183 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 183 (359)
.++.|.|.+|+|||+++.+++.+. ...+=..++|++... +..++...++
T Consensus 14 ~l~lI~G~~G~GKT~~~~~~~~~~--~~~~g~~vly~s~E~--~~~~~~~r~~ 62 (242)
T cd00984 14 DLIIIAARPSMGKTAFALNIAENI--AKKQGKPVLFFSLEM--SKEQLLQRLL 62 (242)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHH--HHhCCCceEEEeCCC--CHHHHHHHHH
Confidence 589999999999999999988773 222122477776544 3444444443
No 340
>PRK10536 hypothetical protein; Provisional
Probab=96.26 E-value=0.011 Score=52.50 Aligned_cols=43 Identities=19% Similarity=0.167 Sum_probs=33.6
Q ss_pred ccccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 107 TTLVGENTKKIVKKVWEDLMGDKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 107 ~~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..+.++.. ....++.++.+. .++.+.|.+|+|||+||.+++.+
T Consensus 55 ~~i~p~n~--~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 55 SPILARNE--AQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred ccccCCCH--HHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHH
Confidence 34555655 666777777664 59999999999999999998875
No 341
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.24 E-value=0.0032 Score=51.34 Aligned_cols=22 Identities=32% Similarity=0.530 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 038454 132 KIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 132 vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
++.+.|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4789999999999999999887
No 342
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.24 E-value=0.017 Score=56.79 Aligned_cols=41 Identities=20% Similarity=0.052 Sum_probs=28.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCC
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQ 171 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~ 171 (359)
.-+++.|.|.+|+||||||.+++.. . ..+.=..++||+..+
T Consensus 20 ~g~~~Li~G~pGsGKT~la~qfl~~-g-~~~~ge~~lyvs~eE 60 (484)
T TIGR02655 20 IGRSTLVSGTSGTGKTLFSIQFLYN-G-IIHFDEPGVFVTFEE 60 (484)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH-H-HHhCCCCEEEEEEec
Confidence 3579999999999999999998654 1 111113466776643
No 343
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=96.23 E-value=0.011 Score=57.00 Aligned_cols=89 Identities=21% Similarity=0.264 Sum_probs=56.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCc-CHHHHHHHHHHHhcCC------CCCCccH------
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPL-DLVKLQAEIAMALKLS------LTEDEDK------ 196 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~------~~~~~~~------ 196 (359)
-..++|.|.+|+|||||+.++++.. . +++-+.++++-+++.. ...++...+...-... .....+.
T Consensus 143 GQR~gIfa~~G~GKt~Ll~~~~~~~-~-~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a 220 (461)
T PRK12597 143 GGKTGLFGGAGVGKTVLMMELIFNI-S-KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRV 220 (461)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHH-H-hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHH
Confidence 3579999999999999999998873 2 2355677787776654 4566666665432110 0111111
Q ss_pred HHHHHHHHHHHhc--CCcEEEEEecC
Q 038454 197 VSRARRLLGKLKA--KKKFVLILDDI 220 (359)
Q Consensus 197 ~~~~~~l~~~l~~--~k~~LlVlDdv 220 (359)
....-.+.++++. ++++||++|++
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLl~~Dsl 246 (461)
T PRK12597 221 VLTGLTIAEYLRDEEKEDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHHHhcCCceEEEeccc
Confidence 1222334566643 39999999999
No 344
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=96.22 E-value=0.0033 Score=53.35 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 038454 132 KIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 132 vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
+|+|.|.+|+||||||+.++..
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999987
No 345
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=96.20 E-value=0.023 Score=56.29 Aligned_cols=46 Identities=15% Similarity=0.322 Sum_probs=34.5
Q ss_pred cccccccchHHHHHHHHHHhcC--CCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 106 TTTLVGENTKKIVKKVWEDLMG--DKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l~~--~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
...++|.+. .+.++.+.+.. .....|.|+|..|+|||++|+.+.+.
T Consensus 186 ~~~iig~s~--~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~ 233 (509)
T PRK05022 186 EGEMIGQSP--AMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAA 233 (509)
T ss_pred CCceeecCH--HHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHh
Confidence 467899987 55555544432 23456999999999999999999887
No 346
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=96.19 E-value=0.059 Score=49.96 Aligned_cols=48 Identities=21% Similarity=0.268 Sum_probs=36.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCc-CHHHHHHHHH
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPL-DLVKLQAEIA 183 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~ 183 (359)
..++|.|..|+|||+|+++++++ . +-+.++++-+++.. .+.+++.++-
T Consensus 158 qr~~I~G~~G~GKT~L~~~Iak~-~----~~dvvVyv~iGERg~Ev~e~l~ef~ 206 (369)
T cd01134 158 GTAAIPGPFGCGKTVIQQSLSKY-S----NSDIVIYVGCGERGNEMTEVLEEFP 206 (369)
T ss_pred CEEEEECCCCCChHHHHHHHHhC-C----CCCEEEEEEeCCChHHHHHHHHHHH
Confidence 57999999999999999999987 2 23567888887654 4556666653
No 347
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=96.19 E-value=0.013 Score=58.96 Aligned_cols=77 Identities=12% Similarity=0.144 Sum_probs=49.4
Q ss_pred CcccccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHH
Q 038454 105 PTTTLVGENTKKIVKKVWEDLMGDKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAM 184 (359)
Q Consensus 105 ~~~~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 184 (359)
..+.++|.+. .+..+...+..+ +-+.++|++|+||||+|+.+++.+ ....|...+++.- ...+...+++.++.
T Consensus 16 ~~~~viG~~~--a~~~l~~a~~~~--~~~ll~G~pG~GKT~la~~la~~l--~~~~~~~~~~~~n-~~~~~~~~~~~v~~ 88 (608)
T TIGR00764 16 LIDQVIGQEE--AVEIIKKAAKQK--RNVLLIGEPGVGKSMLAKAMAELL--PDEELEDILVYPN-PEDPNMPRIVEVPA 88 (608)
T ss_pred hHhhccCHHH--HHHHHHHHHHcC--CCEEEECCCCCCHHHHHHHHHHHc--CchhheeEEEEeC-CCCCchHHHHHHHH
Confidence 3467888755 666666656555 356699999999999999999884 2233333333332 22345566777776
Q ss_pred HhcC
Q 038454 185 ALKL 188 (359)
Q Consensus 185 ~l~~ 188 (359)
.++.
T Consensus 89 ~~g~ 92 (608)
T TIGR00764 89 GEGR 92 (608)
T ss_pred hhch
Confidence 6654
No 348
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.18 E-value=0.0054 Score=55.07 Aligned_cols=41 Identities=20% Similarity=0.228 Sum_probs=34.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCC
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQP 172 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~ 172 (359)
.-+++.|+|.+|+|||+++.++... .......++||+..+.
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~---~~~~ge~vlyvs~~e~ 62 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYE---GAREGEPVLYVSTEES 62 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH---HHhcCCcEEEEEecCC
Confidence 4579999999999999999999988 3444677999988764
No 349
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.18 E-value=0.038 Score=49.83 Aligned_cols=52 Identities=17% Similarity=0.077 Sum_probs=35.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHHH
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAMA 185 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~ 185 (359)
-.++.|.|.+|+||||++.+++... ...+=..++|++... +..++...+...
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~--~~~~g~~vl~iS~E~--~~~~~~~r~~~~ 81 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDL--ITQHGVRVGTISLEE--PVVRTARRLLGQ 81 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH--HHhcCceEEEEEccc--CHHHHHHHHHHH
Confidence 3588999999999999999998772 122123478887755 345555555444
No 350
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.18 E-value=0.058 Score=47.76 Aligned_cols=23 Identities=22% Similarity=0.366 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.+++|+|+.|.|||||.+.+..-
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGl 53 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGL 53 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 78999999999999999999884
No 351
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.17 E-value=0.0022 Score=50.37 Aligned_cols=27 Identities=22% Similarity=0.364 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHHcCcccccCCCc
Q 038454 133 IGVWGMGGFGKTAIMRHINNRPQEETNEFS 162 (359)
Q Consensus 133 i~I~G~gGiGKTtLa~~v~~~~~~~~~~F~ 162 (359)
|.|+|.+|+||||+|+.++.. ....|.
T Consensus 2 vLleg~PG~GKT~la~~lA~~---~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARS---LGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHHH---TT--EE
T ss_pred EeeECCCccHHHHHHHHHHHH---cCCcee
Confidence 679999999999999999988 455564
No 352
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=96.16 E-value=0.0097 Score=56.44 Aligned_cols=46 Identities=24% Similarity=0.342 Sum_probs=34.2
Q ss_pred cccccccchHHHHHHHHHHhcC---------C-----CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 106 TTTLVGENTKKIVKKVWEDLMG---------D-----KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l~~---------~-----~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
...++|.+. .+..+..++.+ + ....|.++|++|+|||+||+.++..
T Consensus 14 d~~IiGQe~--AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~ 73 (443)
T PRK05201 14 DKYIIGQDD--AKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKL 73 (443)
T ss_pred ccccCCHHH--HHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 456888866 55555554422 0 1467999999999999999999987
No 353
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.16 E-value=0.0046 Score=52.07 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
++|+|+|++|+|||||++.+++.
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHcc
Confidence 57999999999999999999986
No 354
>PTZ00185 ATPase alpha subunit; Provisional
Probab=96.15 E-value=0.043 Score=53.29 Aligned_cols=90 Identities=14% Similarity=0.115 Sum_probs=53.7
Q ss_pred ccEEEEEcCCCCcHHHHH-HHHHcCcccc-----cCCCccEEEEEeCCCcCHHHHHHHHHHHhcC-C-------CCCCcc
Q 038454 130 VTKIGVWGMGGFGKTAIM-RHINNRPQEE-----TNEFSDVIWVTVSQPLDLVKLQAEIAMALKL-S-------LTEDED 195 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa-~~v~~~~~~~-----~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~-~-------~~~~~~ 195 (359)
-..++|.|..|+|||+|| -.+.++ ..+ .++-..++++-+++..+...-+...+..-+. + ..+...
T Consensus 189 GQR~lIfGd~GtGKTtLAld~IinQ-~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~ 267 (574)
T PTZ00185 189 GQRELIVGDRQTGKTSIAVSTIINQ-VRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPA 267 (574)
T ss_pred CCEEEeecCCCCChHHHHHHHHHhh-hhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCH
Confidence 356899999999999997 556666 311 1233567888888876544445555555441 1 011111
Q ss_pred HHH-----HHHHHHHHHhc-CCcEEEEEecC
Q 038454 196 KVS-----RARRLLGKLKA-KKKFVLILDDI 220 (359)
Q Consensus 196 ~~~-----~~~~l~~~l~~-~k~~LlVlDdv 220 (359)
... ..-.+.+++++ ++.+|+|+||+
T Consensus 268 ~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDL 298 (574)
T PTZ00185 268 GLQYLAPYSGVTMGEYFMNRGRHCLCVYDDL 298 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEcCc
Confidence 111 12334455533 49999999999
No 355
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=96.15 E-value=0.047 Score=50.44 Aligned_cols=86 Identities=13% Similarity=0.235 Sum_probs=50.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeC-CCcCHHHHHHHHHHHhcC-------CCCCCccH-----
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVS-QPLDLVKLQAEIAMALKL-------SLTEDEDK----- 196 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~-~~~~~~~~~~~i~~~l~~-------~~~~~~~~----- 196 (359)
-..++|+|..|+|||||.+.+.+. .. -+.....-+. ...+..++....+..-+. ...+....
T Consensus 69 Gqri~I~G~sG~GKTtLl~~Ia~~---~~--~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~ 143 (326)
T cd01136 69 GQRLGIFAGSGVGKSTLLGMIARG---TT--ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKA 143 (326)
T ss_pred CcEEEEECCCCCChHHHHHHHhCC---CC--CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHH
Confidence 467899999999999999999887 22 1233334443 334566666655554221 11111111
Q ss_pred HHHHHHHHHHHhc-CCcEEEEEecC
Q 038454 197 VSRARRLLGKLKA-KKKFVLILDDI 220 (359)
Q Consensus 197 ~~~~~~l~~~l~~-~k~~LlVlDdv 220 (359)
....-.+.+++.. ++.+||++||+
T Consensus 144 ~~~a~~~AEyfr~~g~~Vll~~Dsl 168 (326)
T cd01136 144 AYTATAIAEYFRDQGKDVLLLMDSL 168 (326)
T ss_pred HHHHHHHHHHHHHcCCCeEEEeccc
Confidence 1122233444433 59999999998
No 356
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=96.14 E-value=0.021 Score=53.10 Aligned_cols=22 Identities=18% Similarity=0.332 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHcCc
Q 038454 133 IGVWGMGGFGKTAIMRHINNRP 154 (359)
Q Consensus 133 i~I~G~gGiGKTtLa~~v~~~~ 154 (359)
+.+.|++|+||||+++.+.+.+
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l 23 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATL 23 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999773
No 357
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.13 E-value=0.022 Score=56.35 Aligned_cols=41 Identities=22% Similarity=0.084 Sum_probs=30.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCC
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQ 171 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~ 171 (359)
.-+++.|.|.+|+|||+||.+++... ..++=..++|++...
T Consensus 30 ~Gs~~li~G~pGsGKT~l~~qf~~~~--~~~~ge~~lyis~ee 70 (509)
T PRK09302 30 KGRPTLVSGTAGTGKTLFALQFLVNG--IKRFDEPGVFVTFEE 70 (509)
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH--HHhcCCCEEEEEccC
Confidence 34789999999999999999987651 112123578887665
No 358
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.12 E-value=0.0055 Score=51.19 Aligned_cols=26 Identities=15% Similarity=0.319 Sum_probs=23.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcCc
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNRP 154 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 154 (359)
..++++|+|..|+|||||+..+...+
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l 30 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPAL 30 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHH
Confidence 46799999999999999999999873
No 359
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.11 E-value=0.039 Score=48.27 Aligned_cols=40 Identities=20% Similarity=0.175 Sum_probs=29.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQP 172 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~ 172 (359)
-.++.|.|.+|+|||++|.+++... ... =..++|++...+
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~--~~~-g~~~~y~s~e~~ 55 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQG--LKN-GEKAMYISLEER 55 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH--HhC-CCeEEEEECCCC
Confidence 4689999999999999999988662 122 234778877653
No 360
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=96.10 E-value=0.033 Score=53.53 Aligned_cols=89 Identities=19% Similarity=0.263 Sum_probs=57.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCc-CHHHHHHHHHHHhcC-------CCCCCccH-----
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPL-DLVKLQAEIAMALKL-------SLTEDEDK----- 196 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~-------~~~~~~~~----- 196 (359)
-..++|.|.+|+|||+|+.++.+. .. ..+-+.++|+-+++.. ...++.+++...=.. ...+....
T Consensus 138 GQr~~Ifg~~G~GKt~l~~~~~~~-~~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~ 215 (449)
T TIGR03305 138 GGKAGLFGGAGVGKTVLLTEMIHN-MV-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRV 215 (449)
T ss_pred CCEEEeecCCCCChhHHHHHHHHH-HH-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHH
Confidence 357999999999999999999887 22 2234677888887664 456666666543111 11111111
Q ss_pred HHHHHHHHHHHhc--CCcEEEEEecC
Q 038454 197 VSRARRLLGKLKA--KKKFVLILDDI 220 (359)
Q Consensus 197 ~~~~~~l~~~l~~--~k~~LlVlDdv 220 (359)
....-.+.++++. ++++||++||+
T Consensus 216 ~~~a~tiAEyfrd~~G~~VLl~~Dsl 241 (449)
T TIGR03305 216 GHTALTMAEYFRDDEKQDVLLLIDNI 241 (449)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecCh
Confidence 1223345566654 59999999999
No 361
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.09 E-value=0.0042 Score=52.46 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCc
Q 038454 132 KIGVWGMGGFGKTAIMRHINNRP 154 (359)
Q Consensus 132 vi~I~G~gGiGKTtLa~~v~~~~ 154 (359)
+|+|.|.+|+||||||..+...+
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l 23 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQL 23 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999873
No 362
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=96.09 E-value=0.13 Score=50.84 Aligned_cols=45 Identities=18% Similarity=0.279 Sum_probs=33.4
Q ss_pred ccccccchHHHHHHHHHHhc--CCCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 107 TTLVGENTKKIVKKVWEDLM--GDKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 107 ~~~vGr~~~~~~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..++|.+. .+..+...+. ......|.|.|..|+||+.+|+.+++.
T Consensus 212 ~~iiG~S~--~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~ 258 (526)
T TIGR02329 212 DDLLGASA--PMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQL 258 (526)
T ss_pred hheeeCCH--HHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHh
Confidence 45899877 5555555442 122367999999999999999999876
No 363
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.08 E-value=0.048 Score=54.04 Aligned_cols=85 Identities=14% Similarity=0.114 Sum_probs=53.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHHHhcCCC---------------CCCc
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAMALKLSL---------------TEDE 194 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~---------------~~~~ 194 (359)
-.++.|.|.+|+|||+||.+++... ...-..++|++.... ..++.+.+ .+++.+. +...
T Consensus 273 g~~~li~G~~G~GKT~l~~~~~~~~---~~~g~~~~yis~e~~--~~~i~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~ 346 (509)
T PRK09302 273 GSIILVSGATGTGKTLLASKFAEAA---CRRGERCLLFAFEES--RAQLIRNA-RSWGIDLEKMEEKGLLKIICARPESY 346 (509)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH---HhCCCcEEEEEecCC--HHHHHHHH-HHcCCChHHHhhcCCceeecCCcccC
Confidence 4688999999999999999998762 222346888877654 44444333 3343211 1122
Q ss_pred cHHHHHHHHHHHHhcCCcEEEEEecC
Q 038454 195 DKVSRARRLLGKLKAKKKFVLILDDI 220 (359)
Q Consensus 195 ~~~~~~~~l~~~l~~~k~~LlVlDdv 220 (359)
+.+.....+.+.+...+.-++|+|.+
T Consensus 347 ~~~~~~~~i~~~i~~~~~~~vVIDsl 372 (509)
T PRK09302 347 GLEDHLIIIKREIEEFKPSRVAIDPL 372 (509)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEcCH
Confidence 34455666666665535568999998
No 364
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.08 E-value=0.0044 Score=50.13 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 038454 132 KIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 132 vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
+|.|.|.+|+||||+|+.+...
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~ 22 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKK 22 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999987
No 365
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.07 E-value=0.0082 Score=52.24 Aligned_cols=24 Identities=25% Similarity=0.458 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
-.+++|+|.+|+|||||++.++.-
T Consensus 33 Ge~lgivGeSGsGKSTL~r~l~Gl 56 (252)
T COG1124 33 GETLGIVGESGSGKSTLARLLAGL 56 (252)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhcc
Confidence 468999999999999999999765
No 366
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.07 E-value=0.012 Score=46.88 Aligned_cols=25 Identities=24% Similarity=0.170 Sum_probs=22.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCc
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRP 154 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~ 154 (359)
-.+|.+.|.-|+||||+++.+++.+
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3589999999999999999999883
No 367
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.06 E-value=0.0096 Score=47.76 Aligned_cols=69 Identities=16% Similarity=0.137 Sum_probs=41.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhc
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAMALKLSLTEDEDKVSRARRLLGKLKA 209 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 209 (359)
.+-|.|.|-+|+|||||+.+++... . .-|+++++-..-.++....-..... ..-+.+.....|...+..
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~-----~---~~~i~isd~vkEn~l~~gyDE~y~c---~i~DEdkv~D~Le~~m~~ 75 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKT-----G---LEYIEISDLVKENNLYEGYDEEYKC---HILDEDKVLDELEPLMIE 75 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHh-----C---CceEehhhHHhhhcchhcccccccC---ccccHHHHHHHHHHHHhc
Confidence 4669999999999999999999661 1 3366666543333332222111111 234566667777666665
No 368
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.06 E-value=0.013 Score=52.95 Aligned_cols=35 Identities=17% Similarity=0.204 Sum_probs=29.3
Q ss_pred HHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 119 KKVWEDLMGDKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 119 ~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
++...++...+..+|.|.|.+|+|||||+..+.+.
T Consensus 93 ~~~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 93 ERNRARFAARKQLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred HHHHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34445555668899999999999999999999987
No 369
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=96.06 E-value=0.0054 Score=54.12 Aligned_cols=25 Identities=40% Similarity=0.571 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.+.+|.++||+|+||||..++++.+
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~h 42 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSH 42 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHH
Confidence 4678999999999999999999988
No 370
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.05 E-value=0.044 Score=50.68 Aligned_cols=26 Identities=31% Similarity=0.397 Sum_probs=23.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcCc
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNRP 154 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 154 (359)
...+++++|++|+||||++..++..+
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46799999999999999999998873
No 371
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.05 E-value=0.044 Score=45.75 Aligned_cols=24 Identities=21% Similarity=0.397 Sum_probs=22.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
-.+++|.|..|.|||||.+.++.-
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~ 51 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRL 51 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC
Confidence 468999999999999999999887
No 372
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.05 E-value=0.014 Score=50.92 Aligned_cols=65 Identities=14% Similarity=0.128 Sum_probs=34.1
Q ss_pred HHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHcCccc----ccCCCccEEEEEeCCCcCHHHHHHHHHH
Q 038454 118 VKKVWEDLMGDKVTKIGVWGMGGFGKTAIMRHINNRPQE----ETNEFSDVIWVTVSQPLDLVKLQAEIAM 184 (359)
Q Consensus 118 ~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~----~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 184 (359)
.+.+...+.... +..|+|++|.|||+++..+...+.. ....-...+-++...+..+..++..+..
T Consensus 7 ~~Ai~~~~~~~~--~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 7 REAIQSALSSNG--ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp HHHHHHHCTSSE---EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCC--CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 344444444443 7899999999999888777766211 1123333444444444444555444443
No 373
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.05 E-value=0.021 Score=51.34 Aligned_cols=32 Identities=25% Similarity=0.233 Sum_probs=25.1
Q ss_pred HHHhcCCCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 122 WEDLMGDKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 122 ~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
+..+....-.+|.|.|..|+||||++..+.+.
T Consensus 72 l~~~~~~~~GlilisG~tGSGKTT~l~all~~ 103 (264)
T cd01129 72 FRKLLEKPHGIILVTGPTGSGKTTTLYSALSE 103 (264)
T ss_pred HHHHHhcCCCEEEEECCCCCcHHHHHHHHHhh
Confidence 33343444578999999999999999988776
No 374
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=96.04 E-value=0.0058 Score=47.46 Aligned_cols=21 Identities=38% Similarity=0.612 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 038454 133 IGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 133 i~I~G~gGiGKTtLa~~v~~~ 153 (359)
|.|+|.+|+|||||.+.+...
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~ 22 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGG 22 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 789999999999999999977
No 375
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=96.04 E-value=0.01 Score=51.33 Aligned_cols=31 Identities=19% Similarity=0.301 Sum_probs=27.1
Q ss_pred HHhcCCCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 123 EDLMGDKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 123 ~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
+.+...++++|+++|..|+|||||..++.+.
T Consensus 15 ~~~~~~~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 15 ERLDKHGLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred HHhhhcCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3455668999999999999999999999887
No 376
>PRK13947 shikimate kinase; Provisional
Probab=96.04 E-value=0.0046 Score=51.62 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 038454 132 KIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 132 vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.|.|+|++|+||||+|+.+++.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~ 24 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATT 24 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 4899999999999999999988
No 377
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.02 E-value=0.011 Score=53.07 Aligned_cols=62 Identities=19% Similarity=0.321 Sum_probs=43.1
Q ss_pred HHHHHHhc--CCCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHH
Q 038454 119 KKVWEDLM--GDKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAE 181 (359)
Q Consensus 119 ~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 181 (359)
.+|+..+. .++..+|+|+|.||+|||||.-.+...+ ...++--.++-|+-|.+++--.++-+
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l-~~~G~rVaVlAVDPSSp~TGGsiLGD 101 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGREL-RERGHRVAVLAVDPSSPFTGGSILGD 101 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHH-HHCCcEEEEEEECCCCCCCCcccccc
Confidence 35555553 4677899999999999999999998884 23344345666776777765555443
No 378
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=96.02 E-value=0.012 Score=48.50 Aligned_cols=34 Identities=21% Similarity=0.330 Sum_probs=28.8
Q ss_pred HHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 117 IVKKVWEDLMGDKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 117 ~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.+++|..++.+ ++++++|.+|+|||||+..+...
T Consensus 25 g~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 25 GIEELKELLKG---KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp THHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTS
T ss_pred CHHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhh
Confidence 45667666665 78999999999999999999987
No 379
>PRK06851 hypothetical protein; Provisional
Probab=96.01 E-value=0.1 Score=49.04 Aligned_cols=45 Identities=18% Similarity=0.269 Sum_probs=34.1
Q ss_pred cCCCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCC
Q 038454 126 MGDKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQP 172 (359)
Q Consensus 126 ~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~ 172 (359)
..+--+++.|.|.+|+|||||++.++... ....++..++-|.+.+
T Consensus 210 ~~~~~~~~~i~G~pG~GKstl~~~i~~~a--~~~G~~v~~~hC~~dP 254 (367)
T PRK06851 210 TEGVKNRYFLKGRPGTGKSTMLKKIAKAA--EERGFDVEVYHCGFDP 254 (367)
T ss_pred hcccceEEEEeCCCCCcHHHHHHHHHHHH--HhCCCeEEEEeCCCCC
Confidence 34556889999999999999999999983 3556766666555444
No 380
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.01 E-value=0.029 Score=46.07 Aligned_cols=80 Identities=18% Similarity=0.155 Sum_probs=45.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCc--CHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHh
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPL--DLVKLQAEIAMALKLSLTEDEDKVSRARRLLGKLK 208 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 208 (359)
.+++|+|..|.|||||++.+...+ ....+.+++...... .... ....++.-.. -+..+...-.+...+.
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~----~~~~G~i~~~~~~~~~~~~~~----~~~~i~~~~q-lS~G~~~r~~l~~~l~ 96 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLL----KPTSGEILIDGKDIAKLPLEE----LRRRIGYVPQ-LSGGQRQRVALARALL 96 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC----CCCccEEEECCEEcccCCHHH----HHhceEEEee-CCHHHHHHHHHHHHHh
Confidence 689999999999999999998872 223445554322111 1111 1111211110 1222333444555666
Q ss_pred cCCcEEEEEecC
Q 038454 209 AKKKFVLILDDI 220 (359)
Q Consensus 209 ~~k~~LlVlDdv 220 (359)
. ..-++++|+.
T Consensus 97 ~-~~~i~ilDEp 107 (157)
T cd00267 97 L-NPDLLLLDEP 107 (157)
T ss_pred c-CCCEEEEeCC
Confidence 5 6788888987
No 381
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=96.01 E-value=0.0085 Score=50.73 Aligned_cols=36 Identities=22% Similarity=0.319 Sum_probs=28.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEE
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVT 168 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~ 168 (359)
.++|.|+|++|+|||||+..+... ....|...++.+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~---~~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQE---FPDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHH---STTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh---cccccccceeec
Confidence 478999999999999999999987 345665444444
No 382
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=95.99 E-value=0.008 Score=55.80 Aligned_cols=48 Identities=19% Similarity=0.367 Sum_probs=36.5
Q ss_pred CCcccccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 104 LPTTTLVGENTKKIVKKVWEDLMGDKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 104 ~~~~~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.+-+.++|.+. .+..+.-.+.+.+..-+.+.|.+|+||||+|+.+.+-
T Consensus 5 ~~f~~i~Gq~~--~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~l 52 (334)
T PRK13407 5 FPFSAIVGQEE--MKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAAL 52 (334)
T ss_pred CCHHHhCCHHH--HHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHH
Confidence 34567889865 6766665555444456999999999999999999776
No 383
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.99 E-value=0.0069 Score=52.19 Aligned_cols=24 Identities=25% Similarity=0.348 Sum_probs=22.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..+|+|+|++|+|||||++.++..
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999999987
No 384
>PF13479 AAA_24: AAA domain
Probab=95.98 E-value=0.03 Score=48.69 Aligned_cols=20 Identities=35% Similarity=0.547 Sum_probs=17.8
Q ss_pred cEEEEEcCCCCcHHHHHHHH
Q 038454 131 TKIGVWGMGGFGKTAIMRHI 150 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v 150 (359)
-.+.|+|.+|+||||+|..+
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC
Confidence 46899999999999999766
No 385
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=95.98 E-value=0.014 Score=45.80 Aligned_cols=47 Identities=23% Similarity=0.350 Sum_probs=34.0
Q ss_pred ccccccch--HHHHHHHHHHhcC---CCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 107 TTLVGENT--KKIVKKVWEDLMG---DKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 107 ~~~vGr~~--~~~~~~l~~~l~~---~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..++|..- +..+..|...+.+ +++-|++.+|.+|+|||.+++.+++.
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 46777755 2344455555544 35678999999999999998888877
No 386
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=95.96 E-value=0.036 Score=53.85 Aligned_cols=81 Identities=17% Similarity=0.306 Sum_probs=47.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHHHhcCCCC-----CCccHHHHHHHHH
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAMALKLSLT-----EDEDKVSRARRLL 204 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 204 (359)
-.++.|.|.+|+|||||+.+++.... ... ..++|++..+. ..++.. -+..++.... ...+.+ .+.
T Consensus 94 GsvilI~G~pGsGKTTL~lq~a~~~a--~~g-~kvlYvs~EEs--~~qi~~-ra~rlg~~~~~l~~~~e~~~~----~I~ 163 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQVACQLA--KNQ-MKVLYVSGEES--LQQIKM-RAIRLGLPEPNLYVLSETNWE----QIC 163 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHH--hcC-CcEEEEECcCC--HHHHHH-HHHHcCCChHHeEEcCCCCHH----HHH
Confidence 46899999999999999999987732 121 24778876543 333222 1233433211 112333 333
Q ss_pred HHHhcCCcEEEEEecC
Q 038454 205 GKLKAKKKFVLILDDI 220 (359)
Q Consensus 205 ~~l~~~k~~LlVlDdv 220 (359)
+.+...+.-++|+|.+
T Consensus 164 ~~i~~~~~~~vVIDSI 179 (454)
T TIGR00416 164 ANIEEENPQACVIDSI 179 (454)
T ss_pred HHHHhcCCcEEEEecc
Confidence 4444436678999987
No 387
>PF13245 AAA_19: Part of AAA domain
Probab=95.95 E-value=0.016 Score=41.36 Aligned_cols=25 Identities=24% Similarity=0.134 Sum_probs=18.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
+.+++.|.|++|.|||+++......
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3577888999999999655555444
No 388
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=95.95 E-value=0.0064 Score=52.13 Aligned_cols=24 Identities=33% Similarity=0.317 Sum_probs=22.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..+|.|.|.+|+||||+|+.++.+
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~ 26 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARH 26 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999987
No 389
>PRK13949 shikimate kinase; Provisional
Probab=95.95 E-value=0.0054 Score=51.28 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 038454 132 KIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 132 vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.|.|+|++|+||||+++.+++.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999988
No 390
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.95 E-value=0.012 Score=56.97 Aligned_cols=81 Identities=17% Similarity=0.307 Sum_probs=48.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHHHhcCCCC-----CCccHHHHHHHHH
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAMALKLSLT-----EDEDKVSRARRLL 204 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 204 (359)
-.++.|.|.+|+|||||+.+++.... ... ..++|++..+. ..++.. -+..++.... ...+.+ .+.
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a--~~g-~~vlYvs~Ees--~~qi~~-ra~rlg~~~~~l~~~~e~~l~----~i~ 149 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLA--AAG-GKVLYVSGEES--ASQIKL-RAERLGLPSDNLYLLAETNLE----AIL 149 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH--hcC-CeEEEEEcccc--HHHHHH-HHHHcCCChhcEEEeCCCCHH----HHH
Confidence 46899999999999999999988732 122 24778876543 333322 2444543211 112333 333
Q ss_pred HHHhcCCcEEEEEecC
Q 038454 205 GKLKAKKKFVLILDDI 220 (359)
Q Consensus 205 ~~l~~~k~~LlVlDdv 220 (359)
+.+...+.-++|+|.+
T Consensus 150 ~~i~~~~~~lVVIDSI 165 (446)
T PRK11823 150 ATIEEEKPDLVVIDSI 165 (446)
T ss_pred HHHHhhCCCEEEEech
Confidence 3333336678999998
No 391
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.94 E-value=0.0046 Score=51.19 Aligned_cols=21 Identities=29% Similarity=0.534 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 038454 133 IGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 133 i~I~G~gGiGKTtLa~~v~~~ 153 (359)
|.|+|++|+||||+|+.+.+.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHR 21 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999988
No 392
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.94 E-value=0.054 Score=45.17 Aligned_cols=89 Identities=13% Similarity=0.010 Sum_probs=46.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccE--EEEEeCCCcCHHHHHHHHHHH---hcCC--CC--CCcc----H
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDV--IWVTVSQPLDLVKLQAEIAMA---LKLS--LT--EDED----K 196 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~--~wv~~~~~~~~~~~~~~i~~~---l~~~--~~--~~~~----~ 196 (359)
...|-|++..|.||||.|..++-+ . ....+... -|+.-.........+..+.-. ++.. .. +... .
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~r-a-~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~ 82 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALR-A-LGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIA 82 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHH-H-HHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHH
Confidence 367888899999999999998877 2 23334322 144333233444444443000 0111 00 1111 1
Q ss_pred HHHHHHHHHHHhcCCcEEEEEecC
Q 038454 197 VSRARRLLGKLKAKKKFVLILDDI 220 (359)
Q Consensus 197 ~~~~~~l~~~l~~~k~~LlVlDdv 220 (359)
........+.+..+.--|||||.+
T Consensus 83 ~~~~~~a~~~l~~~~~DlvVLDEi 106 (173)
T TIGR00708 83 KAAWQHAKEMLADPELDLVLLDEL 106 (173)
T ss_pred HHHHHHHHHHHhcCCCCEEEehhh
Confidence 122333444555545569999998
No 393
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.93 E-value=0.0066 Score=51.58 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.+++|+|++|+|||||++.++..
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 47899999999999999999877
No 394
>PRK14530 adenylate kinase; Provisional
Probab=95.93 E-value=0.0062 Score=53.02 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
+.|.|+|++|+||||+|+.++..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~ 26 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEE 26 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999887
No 395
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.93 E-value=0.026 Score=52.82 Aligned_cols=83 Identities=18% Similarity=0.211 Sum_probs=45.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhc
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAMALKLSLTEDEDKVSRARRLLGKLKA 209 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 209 (359)
...|.|.|+.|+||||+...+.+.+ ..+....++. +.++... ..... ..+-.......+.......+...++.
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i---~~~~~~~i~t-iEdp~E~--~~~~~-~~~i~q~evg~~~~~~~~~l~~~lr~ 194 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYI---NKNAAGHIIT-IEDPIEY--VHRNK-RSLINQREVGLDTLSFANALRAALRE 194 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh---CcCCCCEEEE-EcCChhh--hccCc-cceEEccccCCCCcCHHHHHHHhhcc
Confidence 4789999999999999999988762 2333344443 2222111 00000 00000000011122344556666776
Q ss_pred CCcEEEEEecC
Q 038454 210 KKKFVLILDDI 220 (359)
Q Consensus 210 ~k~~LlVlDdv 220 (359)
.+=.|++|.+
T Consensus 195 -~pd~i~vgEi 204 (343)
T TIGR01420 195 -DPDVILIGEM 204 (343)
T ss_pred -CCCEEEEeCC
Confidence 7888889998
No 396
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.92 E-value=0.0067 Score=50.00 Aligned_cols=20 Identities=30% Similarity=0.536 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 038454 132 KIGVWGMGGFGKTAIMRHIN 151 (359)
Q Consensus 132 vi~I~G~gGiGKTtLa~~v~ 151 (359)
.|+|.|.||+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999988
No 397
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.92 E-value=0.0057 Score=52.09 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=23.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCc
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRP 154 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~ 154 (359)
..+|+|-||=|+||||||+.+++++
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l 28 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHL 28 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHh
Confidence 4689999999999999999999983
No 398
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.91 E-value=0.013 Score=51.65 Aligned_cols=60 Identities=22% Similarity=0.299 Sum_probs=35.3
Q ss_pred HHHHHHhc--CCCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHH
Q 038454 119 KKVWEDLM--GDKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQ 179 (359)
Q Consensus 119 ~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 179 (359)
.+++..+. .++..+|+|+|+||+|||||.-.+...+. ..++=-.++-|+-|.+++=-.++
T Consensus 16 ~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~-~~g~~VaVlAVDPSSp~tGGAlL 77 (266)
T PF03308_consen 16 RELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELR-ERGKRVAVLAVDPSSPFTGGALL 77 (266)
T ss_dssp HHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHH-HTT--EEEEEE-GGGGCC---SS
T ss_pred HHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHh-hcCCceEEEEECCCCCCCCCccc
Confidence 34444443 34678999999999999999999988842 22322345566656666544443
No 399
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.90 E-value=0.046 Score=52.24 Aligned_cols=86 Identities=13% Similarity=0.248 Sum_probs=49.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCC-cCHHHHHHHHHHHhcC-------CCCCCccH-----
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQP-LDLVKLQAEIAMALKL-------SLTEDEDK----- 196 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~-------~~~~~~~~----- 196 (359)
-..++|+|..|+|||||+..+.+. . . .+..+.+.++.. ..+.++...+...=.. ...+....
T Consensus 137 Gq~~~I~G~sG~GKTtLl~~I~~~-~--~--~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a 211 (411)
T TIGR03496 137 GQRMGIFAGSGVGKSTLLGMMARY-T--E--ADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRA 211 (411)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC-C--C--CCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHH
Confidence 467999999999999999988876 2 1 233444555553 3455555554433111 11111111
Q ss_pred HHHHHHHHHHHhc-CCcEEEEEecC
Q 038454 197 VSRARRLLGKLKA-KKKFVLILDDI 220 (359)
Q Consensus 197 ~~~~~~l~~~l~~-~k~~LlVlDdv 220 (359)
....-.+.++++. ++++||++||+
T Consensus 212 ~~~a~tiAEyfr~~G~~Vll~~Dsl 236 (411)
T TIGR03496 212 AFYATAIAEYFRDQGKDVLLLMDSL 236 (411)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEeCh
Confidence 1122334455533 48999999999
No 400
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=95.90 E-value=0.049 Score=52.31 Aligned_cols=90 Identities=14% Similarity=0.197 Sum_probs=57.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccC--CCc---------cEEEEEeCCCcCHHHHHHHHHHHhc-CC-------C
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETN--EFS---------DVIWVTVSQPLDLVKLQAEIAMALK-LS-------L 190 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--~F~---------~~~wv~~~~~~~~~~~~~~i~~~l~-~~-------~ 190 (359)
-.-++|.|.+|+|||||+..++++ ..... -.| .++++-+++.....+.+...+..-+ .. .
T Consensus 141 GQRigIfagsGvGKs~L~~~i~~~-~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~at 219 (466)
T TIGR01040 141 GQKIPIFSAAGLPHNEIAAQICRQ-AGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNL 219 (466)
T ss_pred CCeeeeecCCCCCHHHHHHHHHHh-hccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEEC
Confidence 356999999999999999999877 32100 012 5677778887777777776666654 21 1
Q ss_pred CCCccHH-----HHHHHHHHHHh-c-CCcEEEEEecC
Q 038454 191 TEDEDKV-----SRARRLLGKLK-A-KKKFVLILDDI 220 (359)
Q Consensus 191 ~~~~~~~-----~~~~~l~~~l~-~-~k~~LlVlDdv 220 (359)
.+..... ...-.+.++++ + ++++||++||+
T Consensus 220 sd~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~Dsl 256 (466)
T TIGR01040 220 ANDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDM 256 (466)
T ss_pred CCCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccCh
Confidence 1111111 12233556666 2 59999999999
No 401
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=95.90 E-value=0.0063 Score=49.67 Aligned_cols=21 Identities=38% Similarity=0.483 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 038454 133 IGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 133 i~I~G~gGiGKTtLa~~v~~~ 153 (359)
|.|+|++|+||||+|+.++..
T Consensus 2 i~l~G~~GsGKstla~~la~~ 22 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKA 22 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 789999999999999999887
No 402
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.90 E-value=0.0075 Score=50.31 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcCc
Q 038454 133 IGVWGMGGFGKTAIMRHINNRP 154 (359)
Q Consensus 133 i~I~G~gGiGKTtLa~~v~~~~ 154 (359)
|.|+|.+|+|||||++.+++.+
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 7899999999999999999873
No 403
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.89 E-value=0.0076 Score=51.19 Aligned_cols=25 Identities=16% Similarity=0.224 Sum_probs=22.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
+..+|.|+|++|+|||||++.+...
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3578999999999999999999887
No 404
>PRK09099 type III secretion system ATPase; Provisional
Probab=95.89 E-value=0.033 Score=53.53 Aligned_cols=88 Identities=13% Similarity=0.208 Sum_probs=51.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHHHhcC-------CCCCCccH-----
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAMALKL-------SLTEDEDK----- 196 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~-------~~~~~~~~----- 196 (359)
.-..++|.|..|+|||||++.++.. .. . -.++++..-.+.....++.+.+...-+. ...+....
T Consensus 162 ~Gq~~~I~G~sG~GKTtLl~~ia~~-~~--~-d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a 237 (441)
T PRK09099 162 EGQRMGIFAPAGVGKSTLMGMFARG-TQ--C-DVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKA 237 (441)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC-CC--C-CeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHH
Confidence 4468999999999999999999876 21 1 1234443333444556665655543221 11111111
Q ss_pred HHHHHHHHHHHhc-CCcEEEEEecC
Q 038454 197 VSRARRLLGKLKA-KKKFVLILDDI 220 (359)
Q Consensus 197 ~~~~~~l~~~l~~-~k~~LlVlDdv 220 (359)
....-.+.+++++ ++++|+++||+
T Consensus 238 ~~~a~tiAEyfrd~G~~VLl~~Dsl 262 (441)
T PRK09099 238 AYVATAIAEYFRDRGLRVLLMMDSL 262 (441)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccch
Confidence 1122334455543 58999999999
No 405
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.89 E-value=0.0064 Score=48.94 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 038454 132 KIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 132 vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.|+|+|++|+|||||++.+...
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhc
Confidence 3789999999999999999987
No 406
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=95.88 E-value=0.032 Score=46.52 Aligned_cols=43 Identities=28% Similarity=0.404 Sum_probs=27.9
Q ss_pred ccccchHHHHHHHHHHhcC--CCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 109 LVGENTKKIVKKVWEDLMG--DKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 109 ~vGr~~~~~~~~l~~~l~~--~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
++|.+. .+.++++.+.. .....|.|+|..|+||+.+|+.+.+.
T Consensus 1 liG~s~--~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 1 LIGESP--AMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp SS--SH--HHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHC
T ss_pred CEeCCH--HHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHh
Confidence 467666 44444443321 22256779999999999999999987
No 407
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=95.86 E-value=0.71 Score=42.26 Aligned_cols=144 Identities=14% Similarity=0.059 Sum_probs=77.7
Q ss_pred HHHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHcCcc-------cccCCCccEEEEEe-CCCcCHHHHHHHHHHHhc
Q 038454 117 IVKKVWEDLMGDK-VTKIGVWGMGGFGKTAIMRHINNRPQ-------EETNEFSDVIWVTV-SQPLDLVKLQAEIAMALK 187 (359)
Q Consensus 117 ~~~~l~~~l~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~-------~~~~~F~~~~wv~~-~~~~~~~~~~~~i~~~l~ 187 (359)
.+..+...+..+. .++..++|..|.||+++|..+.+.+. ....+-+.+.++.. +......++. ++...+.
T Consensus 4 ~~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~ 82 (299)
T PRK07132 4 WIKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLY 82 (299)
T ss_pred HHHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhc
Confidence 3455566666654 46777999999999999999987730 11111112333332 2223333332 3444433
Q ss_pred CCCCCCccHHHHHHHHHHHHhcCCcEEEEEecC------------------CCC-eEEEee-c--------ccceeeeec
Q 038454 188 LSLTEDEDKVSRARRLLGKLKAKKKFVLILDDI------------------DNH-TFCWGL-R--------SMGCEEVRV 239 (359)
Q Consensus 188 ~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv------------------~~g-~ilvTt-r--------~~~~~~~~l 239 (359)
.... ..+.+-++|+|++ .++ .+|++| . ...|..+++
T Consensus 83 ~~~~----------------~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f 146 (299)
T PRK07132 83 FSSF----------------VQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNV 146 (299)
T ss_pred cCCc----------------ccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEEC
Confidence 2210 0014555666665 223 444444 3 334678999
Q ss_pred CCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHH
Q 038454 240 PPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFT 286 (359)
Q Consensus 240 ~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~ 286 (359)
.+++.++..+.+... + .+ .+.+..++...+|.-.|+..
T Consensus 147 ~~l~~~~l~~~l~~~--~----~~---~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 147 KEPDQQKILAKLLSK--N----KE---KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred CCCCHHHHHHHHHHc--C----CC---hhHHHHHHHHcCCHHHHHHH
Confidence 999999998877654 1 11 23455556666653334433
No 408
>PRK14529 adenylate kinase; Provisional
Probab=95.86 E-value=0.029 Score=48.98 Aligned_cols=81 Identities=17% Similarity=0.121 Sum_probs=42.7
Q ss_pred EEEEcCCCCcHHHHHHHHHcCcccccCCCcc--EEEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhcC
Q 038454 133 IGVWGMGGFGKTAIMRHINNRPQEETNEFSD--VIWVTVSQPLDLVKLQAEIAMALKLSLTEDEDKVSRARRLLGKLKAK 210 (359)
Q Consensus 133 i~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~--~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 210 (359)
|.|.|++|+||||+|+.++..+ ...+.+. .+.-.+..........+.++.+-. ....+-....+.+.+...
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~--~~~~is~gdllr~~i~~~t~lg~~i~~~i~~G~-----lvpdei~~~lv~~~l~~~ 75 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKY--DLAHIESGAIFREHIGGGTELGKKAKEYIDRGD-----LVPDDITIPMILETLKQD 75 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHH--CCCCcccchhhhhhccCCChHHHHHHHHHhccC-----cchHHHHHHHHHHHHhcc
Confidence 7889999999999999998873 1223321 111122222333444444443211 122233344455555442
Q ss_pred CcEEEEEecC
Q 038454 211 KKFVLILDDI 220 (359)
Q Consensus 211 k~~LlVlDdv 220 (359)
..-=+|||+.
T Consensus 76 ~~~g~iLDGf 85 (223)
T PRK14529 76 GKNGWLLDGF 85 (223)
T ss_pred CCCcEEEeCC
Confidence 2334788887
No 409
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=95.85 E-value=0.011 Score=50.74 Aligned_cols=47 Identities=21% Similarity=0.220 Sum_probs=32.0
Q ss_pred HHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEE
Q 038454 119 KKVWEDLMGDKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVT 168 (359)
Q Consensus 119 ~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~ 168 (359)
...++.+. ...++.+.|++|.|||.||.+.+-+ .-..+.|+.++++.
T Consensus 10 ~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~-~v~~g~~~kiii~R 56 (205)
T PF02562_consen 10 KFALDALL--NNDLVIVNGPAGTGKTFLALAAALE-LVKEGEYDKIIITR 56 (205)
T ss_dssp HHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHH-HHHTTS-SEEEEEE
T ss_pred HHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHH-HHHhCCCcEEEEEe
Confidence 34444455 4579999999999999999999877 33457788777764
No 410
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=95.84 E-value=0.044 Score=52.84 Aligned_cols=89 Identities=18% Similarity=0.266 Sum_probs=54.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCc-CHHHHHHHHHHHhcC-------CCCCCccHH----
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPL-DLVKLQAEIAMALKL-------SLTEDEDKV---- 197 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~-------~~~~~~~~~---- 197 (359)
-..++|.|.+|+|||||+..++.. ... ++=+.++++-+++.. ...++...++..=.. ...+.....
T Consensus 144 GQR~gIfa~~GvGKt~Ll~~i~~~-~~~-~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a 221 (463)
T PRK09280 144 GGKIGLFGGAGVGKTVLIQELINN-IAK-EHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRV 221 (463)
T ss_pred CCEEEeecCCCCChhHHHHHHHHH-HHh-cCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 357999999999999999998776 211 112356677776654 466777766653211 111111111
Q ss_pred -HHHHHHHHHHhc--CCcEEEEEecC
Q 038454 198 -SRARRLLGKLKA--KKKFVLILDDI 220 (359)
Q Consensus 198 -~~~~~l~~~l~~--~k~~LlVlDdv 220 (359)
...-.+.+++++ ++++||++|++
T Consensus 222 ~~~a~tiAEyfrd~~G~~VLll~Dsl 247 (463)
T PRK09280 222 ALTGLTMAEYFRDVEGQDVLLFIDNI 247 (463)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecch
Confidence 122335566633 49999999999
No 411
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=95.84 E-value=0.014 Score=50.62 Aligned_cols=41 Identities=29% Similarity=0.437 Sum_probs=27.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcC
Q 038454 132 KIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLD 174 (359)
Q Consensus 132 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~ 174 (359)
.|+|+|-||+||||+|..++..+. .++.|+ ++-|+...+++
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~-~~~~~~-VLvVDaDpd~n 42 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLL-SKGGYN-VLVVDADPDSN 42 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHH-hcCCce-EEEEeCCCCCC
Confidence 689999999999999999776632 222243 55555555444
No 412
>PRK15453 phosphoribulokinase; Provisional
Probab=95.82 E-value=0.0088 Score=53.70 Aligned_cols=27 Identities=30% Similarity=0.311 Sum_probs=23.7
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHcCc
Q 038454 128 DKVTKIGVWGMGGFGKTAIMRHINNRP 154 (359)
Q Consensus 128 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 154 (359)
....+|+|.|.+|+||||+|+.+.+.+
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if 29 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIF 29 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 456899999999999999999998763
No 413
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=95.82 E-value=0.047 Score=52.63 Aligned_cols=89 Identities=13% Similarity=0.205 Sum_probs=49.2
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHHHh------cC-CCCCCccH----
Q 038454 128 DKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAMAL------KL-SLTEDEDK---- 196 (359)
Q Consensus 128 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l------~~-~~~~~~~~---- 196 (359)
..-..++|+|..|+|||||++.+... .. . -.+++++.--+..+..++....+..- .. ...+....
T Consensus 156 ~~Gq~i~I~G~sG~GKStLl~~I~~~-~~--~-~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~~~~~r~~ 231 (438)
T PRK07721 156 GKGQRVGIFAGSGVGKSTLMGMIARN-TS--A-DLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQPALMRIK 231 (438)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcc-cC--C-CeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCCCHHHHHH
Confidence 34578999999999999999988876 21 1 12344443333334555444322211 10 11111111
Q ss_pred -HHHHHHHHHHHhc-CCcEEEEEecC
Q 038454 197 -VSRARRLLGKLKA-KKKFVLILDDI 220 (359)
Q Consensus 197 -~~~~~~l~~~l~~-~k~~LlVlDdv 220 (359)
....-.+.+++++ ++++||++||+
T Consensus 232 ~~~~a~~iAEyfr~~g~~Vll~~Dsl 257 (438)
T PRK07721 232 GAYTATAIAEYFRDQGLNVMLMMDSV 257 (438)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCh
Confidence 1122334455533 59999999998
No 414
>PRK06820 type III secretion system ATPase; Validated
Probab=95.81 E-value=0.039 Score=53.03 Aligned_cols=86 Identities=12% Similarity=0.248 Sum_probs=47.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCc-CHHHHHHHHHHHhcC-------CCCCCccHHH---
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPL-DLVKLQAEIAMALKL-------SLTEDEDKVS--- 198 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~-------~~~~~~~~~~--- 198 (359)
-..++|+|.+|+|||||++.++.. . +-+.+++.-++... ...++....+..=.. ...+......
T Consensus 163 Gqri~I~G~sG~GKStLl~~I~~~-~----~~dv~V~~~iGergrEv~ef~e~~l~~~~~~rtvvv~atsd~p~~~r~~a 237 (440)
T PRK06820 163 GQRIGIFAAAGVGKSTLLGMLCAD-S----AADVMVLALIGERGREVREFLEQVLTPEARARTVVVVATSDRPALERLKG 237 (440)
T ss_pred CCEEEEECCCCCChHHHHHHHhcc-C----CCCEEEEEEEccChHHHHHHHHHhhccCCceeEEEEEeCCCCCHHHHHHH
Confidence 357999999999999999988876 1 22344455555542 233333332221000 1111111111
Q ss_pred --HHHHHHHHHhc-CCcEEEEEecC
Q 038454 199 --RARRLLGKLKA-KKKFVLILDDI 220 (359)
Q Consensus 199 --~~~~l~~~l~~-~k~~LlVlDdv 220 (359)
..-.+.+++++ ++++||++||+
T Consensus 238 ~~~a~tiAEyfrd~G~~VLl~~Dsl 262 (440)
T PRK06820 238 LSTATTIAEYFRDRGKKVLLMADSL 262 (440)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccch
Confidence 12234555543 59999999999
No 415
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=95.79 E-value=0.008 Score=50.39 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
...|.|+|+.|+||||+++.+.+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~ 27 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQ 27 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHH
Confidence 356999999999999999999987
No 416
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.77 E-value=0.051 Score=44.03 Aligned_cols=24 Identities=29% Similarity=0.578 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
-.+++|+|..|.|||||++.+...
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~ 49 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGE 49 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCC
Confidence 368999999999999999999887
No 417
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=95.76 E-value=0.064 Score=51.46 Aligned_cols=88 Identities=17% Similarity=0.243 Sum_probs=51.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHHHhcCCC------CCCccH------
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAMALKLSL------TEDEDK------ 196 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------~~~~~~------ 196 (359)
.-..++|+|..|+|||||+..++.. . .. ...++...-.+.....+++...+..-+... ....+.
T Consensus 155 ~Gqri~I~G~sG~GKTtLl~~Ia~~-~--~~-~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra 230 (432)
T PRK06793 155 IGQKIGIFAGSGVGKSTLLGMIAKN-A--KA-DINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRA 230 (432)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcc-C--CC-CeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHH
Confidence 3467899999999999999999887 2 11 122333322334566677666655432211 011111
Q ss_pred HHHHHHHHHHHhc-CCcEEEEEecC
Q 038454 197 VSRARRLLGKLKA-KKKFVLILDDI 220 (359)
Q Consensus 197 ~~~~~~l~~~l~~-~k~~LlVlDdv 220 (359)
......+.+++++ ++++||++|++
T Consensus 231 ~~~a~~iAEyfr~~G~~VLlilDsl 255 (432)
T PRK06793 231 AKLATSIAEYFRDQGNNVLLMMDSV 255 (432)
T ss_pred HHHHHHHHHHHHHcCCcEEEEecch
Confidence 1122233444433 48999999999
No 418
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=95.75 E-value=0.057 Score=51.95 Aligned_cols=89 Identities=18% Similarity=0.259 Sum_probs=55.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCc-CHHHHHHHHHHHhcCCC------CCCccHHH----
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPL-DLVKLQAEIAMALKLSL------TEDEDKVS---- 198 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~------~~~~~~~~---- 198 (359)
-..++|.|.+|+|||||+..+.... ..++=..++++-+++.. ...++...+...=.... ....+...
T Consensus 143 GQr~~If~~~G~GKt~L~~~~~~~~--~~~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a 220 (461)
T TIGR01039 143 GGKIGLFGGAGVGKTVLIQELINNI--AKEHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRV 220 (461)
T ss_pred CCEEEeecCCCCChHHHHHHHHHHH--HhcCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 3579999999999999999988762 12222357777776653 45667666654311110 11111111
Q ss_pred --HHHHHHHHHhc--CCcEEEEEecC
Q 038454 199 --RARRLLGKLKA--KKKFVLILDDI 220 (359)
Q Consensus 199 --~~~~l~~~l~~--~k~~LlVlDdv 220 (359)
..-.+.++++. ++++||++||+
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLll~Dsl 246 (461)
T TIGR01039 221 ALTGLTMAEYFRDEQGQDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHHHhcCCeeEEEecch
Confidence 22345566644 48999999999
No 419
>PRK13948 shikimate kinase; Provisional
Probab=95.73 E-value=0.01 Score=50.15 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=23.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
....|.++|+.|+||||+++.+.+.
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~ 33 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRA 33 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999987
No 420
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=95.72 E-value=0.025 Score=52.70 Aligned_cols=65 Identities=17% Similarity=0.242 Sum_probs=44.8
Q ss_pred ccccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHH
Q 038454 107 TTLVGENTKKIVKKVWEDLMGDKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAE 181 (359)
Q Consensus 107 ~~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 181 (359)
..++|.+. .+..++..+..+ +-+.+.|.+|+|||+||+.++..+ .. ...+|.+.......++.-.
T Consensus 24 ~~~~g~~~--~~~~~l~a~~~~--~~vll~G~PG~gKT~la~~lA~~l---~~---~~~~i~~t~~l~p~d~~G~ 88 (329)
T COG0714 24 KVVVGDEE--VIELALLALLAG--GHVLLEGPPGVGKTLLARALARAL---GL---PFVRIQCTPDLLPSDLLGT 88 (329)
T ss_pred CeeeccHH--HHHHHHHHHHcC--CCEEEECCCCccHHHHHHHHHHHh---CC---CeEEEecCCCCCHHHhcCc
Confidence 44788754 666666666665 448999999999999999999983 22 2445666666555555433
No 421
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=95.72 E-value=0.042 Score=52.85 Aligned_cols=86 Identities=14% Similarity=0.259 Sum_probs=50.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCC-cCHHHHHHHHHHHhcCC-------CCCCccHH----
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQP-LDLVKLQAEIAMALKLS-------LTEDEDKV---- 197 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~---- 197 (359)
-..++|+|..|+|||||++.+... . ..+.++...+... .+..++...+...-+.. ..+.....
T Consensus 168 GqrigI~G~sG~GKSTLl~~I~g~-~----~~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a 242 (451)
T PRK05688 168 GQRLGLFAGTGVGKSVLLGMMTRF-T----EADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRA 242 (451)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC-C----CCCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHH
Confidence 467999999999999999998876 1 1233444444433 34556655555442221 11111111
Q ss_pred -HHHHHHHHHHhc-CCcEEEEEecC
Q 038454 198 -SRARRLLGKLKA-KKKFVLILDDI 220 (359)
Q Consensus 198 -~~~~~l~~~l~~-~k~~LlVlDdv 220 (359)
...-.+.+++++ ++++||++||+
T Consensus 243 ~~~a~aiAEyfrd~G~~VLl~~Dsl 267 (451)
T PRK05688 243 AMYCTRIAEYFRDKGKNVLLLMDSL 267 (451)
T ss_pred HHHHHHHHHHHHHCCCCEEEEecch
Confidence 112334455543 59999999999
No 422
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.70 E-value=0.028 Score=56.48 Aligned_cols=66 Identities=18% Similarity=0.256 Sum_probs=0.0
Q ss_pred EEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhcCCc
Q 038454 133 IGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAMALKLSLTEDEDKVSRARRLLGKLKAKKK 212 (359)
Q Consensus 133 i~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~ 212 (359)
|.++|++|.|||-||++|+..+ ..-|++|..+.=+..- -..+++...+.+.+.-.. ++
T Consensus 708 ILLYGPPGTGKTLlAKAVATEc--------sL~FlSVKGPELLNMY-------------VGqSE~NVR~VFerAR~A-~P 765 (953)
T KOG0736|consen 708 ILLYGPPGTGKTLLAKAVATEC--------SLNFLSVKGPELLNMY-------------VGQSEENVREVFERARSA-AP 765 (953)
T ss_pred eEEECCCCCchHHHHHHHHhhc--------eeeEEeecCHHHHHHH-------------hcchHHHHHHHHHHhhcc-CC
Q ss_pred EEEEEecC
Q 038454 213 FVLILDDI 220 (359)
Q Consensus 213 ~LlVlDdv 220 (359)
++|.+|.+
T Consensus 766 CVIFFDEL 773 (953)
T KOG0736|consen 766 CVIFFDEL 773 (953)
T ss_pred eEEEeccc
No 423
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=95.70 E-value=0.045 Score=52.51 Aligned_cols=87 Identities=11% Similarity=0.216 Sum_probs=47.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCC-CcCHHHHHHHHHHHhcCC-------CCCC-----cc
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQ-PLDLVKLQAEIAMALKLS-------LTED-----ED 195 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~-------~~~~-----~~ 195 (359)
.-..++|.|..|+|||||+..+... .. .+..+...+.. .....++....+..-+.. ..+. ..
T Consensus 154 ~GQ~igI~G~sGaGKSTLl~~I~g~-~~----~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s~~~rl~ 228 (434)
T PRK07196 154 KGQRVGLMAGSGVGKSVLLGMITRY-TQ----ADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADESPLMRIK 228 (434)
T ss_pred cceEEEEECCCCCCccHHHHHHhcc-cC----CCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCChhhhHH
Confidence 4468999999999999999988876 21 12222222322 223444443433332211 1111 11
Q ss_pred HHHHHHHHHHHHhc-CCcEEEEEecC
Q 038454 196 KVSRARRLLGKLKA-KKKFVLILDDI 220 (359)
Q Consensus 196 ~~~~~~~l~~~l~~-~k~~LlVlDdv 220 (359)
....+..+.++++. ++++||++||+
T Consensus 229 a~e~a~~iAEyfr~~g~~Vll~~Dsl 254 (434)
T PRK07196 229 ATELCHAIATYYRDKGHDVLLLVDSL 254 (434)
T ss_pred HHHHHHHHHHHhhhccCCEEEeecch
Confidence 12223334444433 49999999999
No 424
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=95.70 E-value=0.1 Score=44.50 Aligned_cols=24 Identities=21% Similarity=0.418 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
-.+++|.|..|.|||||.+.++.-
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~Gl 58 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAGR 58 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999876
No 425
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.68 E-value=0.01 Score=51.26 Aligned_cols=25 Identities=28% Similarity=0.473 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..+.|.|+|++|+|||||+..+...
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 5678999999999999999999765
No 426
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=95.67 E-value=0.024 Score=52.22 Aligned_cols=35 Identities=26% Similarity=0.387 Sum_probs=29.2
Q ss_pred HHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 117 IVKKVWEDLMGDKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 117 ~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
....++.++..+ +.|.|.|.+|+||||+|+.++..
T Consensus 53 ~~~~vl~~l~~~--~~ilL~G~pGtGKTtla~~lA~~ 87 (327)
T TIGR01650 53 TTKAICAGFAYD--RRVMVQGYHGTGKSTHIEQIAAR 87 (327)
T ss_pred HHHHHHHHHhcC--CcEEEEeCCCChHHHHHHHHHHH
Confidence 556677777654 45999999999999999999987
No 427
>PLN02200 adenylate kinase family protein
Probab=95.67 E-value=0.009 Score=52.72 Aligned_cols=24 Identities=25% Similarity=0.087 Sum_probs=22.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
+.+|.|.|++|+||||+|+.++..
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~ 66 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVET 66 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999887
No 428
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=95.67 E-value=0.22 Score=50.83 Aligned_cols=45 Identities=13% Similarity=0.191 Sum_probs=30.9
Q ss_pred ccccccchHHHHHHHHHHhcC--CCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 107 TTLVGENTKKIVKKVWEDLMG--DKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 107 ~~~vGr~~~~~~~~l~~~l~~--~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
+.++|.+. .+.+++..... .....|.|+|..|+||+++|+.+.+.
T Consensus 325 ~~l~g~s~--~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~ 371 (638)
T PRK11388 325 DHMPQDSP--QMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNE 371 (638)
T ss_pred cceEECCH--HHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHh
Confidence 45788776 44444433321 12234789999999999999999876
No 429
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=95.67 E-value=0.027 Score=47.69 Aligned_cols=26 Identities=23% Similarity=0.410 Sum_probs=23.4
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 128 DKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 128 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
....++.|.|.+|+||||+|+.+...
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~ 41 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKK 41 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44579999999999999999999987
No 430
>COG0055 AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=95.67 E-value=0.021 Score=52.65 Aligned_cols=89 Identities=18% Similarity=0.247 Sum_probs=55.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCc-CHHHHHHHHHHHhcCC----------CCCCc--cH
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPL-DLVKLQAEIAMALKLS----------LTEDE--DK 196 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~----------~~~~~--~~ 196 (359)
-.-|++.|-+|+|||.|.+++.+.+.+ .|=...+|.-+++.. .-.++..++..+--.+ .++.. ..
T Consensus 147 GgKiGLFGGAGVGKTVl~~ELI~Nia~--~h~g~SVFaGvGERtREGndLy~Em~es~vl~ktalv~gQMNEpPGaR~RV 224 (468)
T COG0055 147 GGKIGLFGGAGVGKTVLIQELINNIAK--EHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARMRV 224 (468)
T ss_pred CceeeeeccCCccceeeHHHHHHHHHH--HcCCeEEEEeccccccchHHHHHHHHhcCCCCceeEEEeecCCCCcceeee
Confidence 357999999999999999999998532 333346777777654 3456666666552111 11110 11
Q ss_pred HHHHHHHHHHHhc--CCcEEEEEecC
Q 038454 197 VSRARRLLGKLKA--KKKFVLILDDI 220 (359)
Q Consensus 197 ~~~~~~l~~~l~~--~k~~LlVlDdv 220 (359)
.-..-...+++++ ++.+||.+||+
T Consensus 225 altGlT~AEyfRD~~gqdVLlFIDNI 250 (468)
T COG0055 225 ALTGLTMAEYFRDEEGQDVLLFIDNI 250 (468)
T ss_pred hhhhhhHHHHhhcccCCeEEEEehhh
Confidence 1111223344544 48999999999
No 431
>PRK13946 shikimate kinase; Provisional
Probab=95.66 E-value=0.0087 Score=50.75 Aligned_cols=24 Identities=21% Similarity=0.356 Sum_probs=22.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.+.|.++|++|+||||+++.+++.
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~ 33 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATM 33 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999998
No 432
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=95.66 E-value=0.024 Score=58.66 Aligned_cols=25 Identities=16% Similarity=0.186 Sum_probs=21.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
+..++.|+|+.|.|||||.+.+...
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHH
Confidence 3478999999999999999988654
No 433
>PRK06761 hypothetical protein; Provisional
Probab=95.66 E-value=0.013 Score=52.96 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCc
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNRP 154 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~~ 154 (359)
++|.|.|++|+||||+++.+++.+
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L 27 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDIL 27 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc
Confidence 579999999999999999999984
No 434
>PRK13975 thymidylate kinase; Provisional
Probab=95.64 E-value=0.009 Score=51.03 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCc
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNRP 154 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~~ 154 (359)
..|+|.|+.|+||||+|+.+++.+
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l 26 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKL 26 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999984
No 435
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.63 E-value=0.011 Score=45.14 Aligned_cols=21 Identities=24% Similarity=0.341 Sum_probs=19.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHH
Q 038454 131 TKIGVWGMGGFGKTAIMRHIN 151 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~ 151 (359)
..++|.|++|+|||||+..+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 679999999999999999876
No 436
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=95.63 E-value=0.024 Score=48.25 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCc
Q 038454 132 KIGVWGMGGFGKTAIMRHINNRP 154 (359)
Q Consensus 132 vi~I~G~gGiGKTtLa~~v~~~~ 154 (359)
+|+|.|+.|+||||+++.+++.+
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l 24 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERL 24 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999884
No 437
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.62 E-value=0.062 Score=47.56 Aligned_cols=22 Identities=18% Similarity=0.274 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 038454 132 KIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 132 vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
+-.|+|++|+|||+||..++..
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHH
Confidence 5678999999999999999875
No 438
>PRK04182 cytidylate kinase; Provisional
Probab=95.62 E-value=0.0095 Score=49.97 Aligned_cols=22 Identities=32% Similarity=0.474 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 038454 132 KIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 132 vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
+|.|.|+.|+||||+|+.++..
T Consensus 2 ~I~i~G~~GsGKstia~~la~~ 23 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999987
No 439
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=95.62 E-value=0.11 Score=50.09 Aligned_cols=87 Identities=13% Similarity=0.213 Sum_probs=49.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCC-CcCHHHHHHHHHHHhcC-------CCCCCccHH---
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQ-PLDLVKLQAEIAMALKL-------SLTEDEDKV--- 197 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~-------~~~~~~~~~--- 197 (359)
.-..++|.|..|+|||||.+.++.. .. .+....+.+.. ...+.++..+....... ...+.....
T Consensus 144 ~Gq~~~I~G~sG~GKStLl~~I~~~---~~--~~~~vi~~iG~~~~ev~~~~~~~~~~~~~~~tvvv~~~s~~p~~~r~~ 218 (422)
T TIGR02546 144 EGQRIGIFAGAGVGKSTLLGMIARG---AS--ADVNVIALIGERGREVREFIEHHLGEEGRKRSVLVVSTSDRPSLERLK 218 (422)
T ss_pred CCCEEEEECCCCCChHHHHHHHhCC---CC--CCEEEEEEEccCCcCHHHHHHHHhccccccceEEEeccccCCHHHHHH
Confidence 3467899999999999999999987 22 23333333433 34555555554433211 111111111
Q ss_pred --HHHHHHHHHHhc-CCcEEEEEecC
Q 038454 198 --SRARRLLGKLKA-KKKFVLILDDI 220 (359)
Q Consensus 198 --~~~~~l~~~l~~-~k~~LlVlDdv 220 (359)
.....+.+++.. ++++|+++|++
T Consensus 219 ~~~~a~~~AE~f~~~g~~Vl~~~Dsl 244 (422)
T TIGR02546 219 AAYTATAIAEYFRDQGKRVLLMMDSL 244 (422)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCc
Confidence 122234444433 58999999999
No 440
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=95.59 E-value=0.034 Score=50.18 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=23.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.+..++|||++|.|||-||+.|+..
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa~ 189 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAAT 189 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHHh
Confidence 3578999999999999999999988
No 441
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.58 E-value=0.0087 Score=49.57 Aligned_cols=21 Identities=29% Similarity=0.393 Sum_probs=17.4
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 038454 133 IGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 133 i~I~G~gGiGKTtLa~~v~~~ 153 (359)
|+|+|..|+|||||+..+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 799999999999999999865
No 442
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.58 E-value=0.069 Score=51.11 Aligned_cols=87 Identities=13% Similarity=0.240 Sum_probs=48.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCC-cCHHHHHHHHHHHhcC-------CCCCCccHH---
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQP-LDLVKLQAEIAMALKL-------SLTEDEDKV--- 197 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~-------~~~~~~~~~--- 197 (359)
.-..++|+|..|+|||||++.+++. . .. +.....-+++. ....++....+.+-+. ...+.....
T Consensus 136 ~Gqri~I~G~sG~GKTtLl~~i~~~-~--~~--~~gvi~~~Ger~~ev~e~~~~~l~~~~~~~~v~v~~tsd~~~~~r~~ 210 (413)
T TIGR03497 136 KGQRVGIFAGSGVGKSTLLGMIARN-A--KA--DINVIALIGERGREVRDFIEKDLGEEGLKRSVVVVATSDQPALMRLK 210 (413)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC-C--CC--CeEEEEEEccchHHHHHHHHHHhcccccceEEEEEECCCCCHHHHHH
Confidence 4468999999999999999988876 2 21 22222233433 2455555554443111 111111111
Q ss_pred --HHHHHHHHHHhc-CCcEEEEEecC
Q 038454 198 --SRARRLLGKLKA-KKKFVLILDDI 220 (359)
Q Consensus 198 --~~~~~l~~~l~~-~k~~LlVlDdv 220 (359)
...-.+.+++++ ++++||++||+
T Consensus 211 ~~~~a~tiAEyfr~~G~~Vll~~Dsl 236 (413)
T TIGR03497 211 AAFTATAIAEYFRDQGKDVLLMMDSV 236 (413)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEcCc
Confidence 122334455533 59999999999
No 443
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=95.57 E-value=0.031 Score=50.69 Aligned_cols=90 Identities=20% Similarity=0.263 Sum_probs=54.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCcccccCCCc-------cEEEEEeCC-CcCHHHHHHHHHHHhcCCCCCC---------
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNRPQEETNEFS-------DVIWVTVSQ-PLDLVKLQAEIAMALKLSLTED--------- 193 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~-------~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~--------- 193 (359)
-++.|+|.||+|||||+..++=.+..-++.|. .+++|++-. ..++.+-++.+..+++.+..+.
T Consensus 90 ~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsPadvrn~dltd~~ 169 (402)
T COG3598 90 YVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSPADVRNMDLTDVS 169 (402)
T ss_pred eeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCChHhhhheeccccc
Confidence 34667799999999999876544222223332 477777644 3456666777888887643210
Q ss_pred -----ccH--HHHHHHHHHHHhcCCcEEEEEecC
Q 038454 194 -----EDK--VSRARRLLGKLKAKKKFVLILDDI 220 (359)
Q Consensus 194 -----~~~--~~~~~~l~~~l~~~k~~LlVlDdv 220 (359)
.+. ..+.+++...+...+.-++|+|-.
T Consensus 170 Gaa~~~d~l~pkl~rRfek~~~Q~rp~~vViDp~ 203 (402)
T COG3598 170 GAADESDVLSPKLYRRFEKILEQKRPDFVVIDPF 203 (402)
T ss_pred cCCCccccccHHHHHHHHHHHHHhCCCeEEEcch
Confidence 110 123444444444446779999987
No 444
>PRK14532 adenylate kinase; Provisional
Probab=95.57 E-value=0.0093 Score=50.65 Aligned_cols=21 Identities=14% Similarity=0.262 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 038454 133 IGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 133 i~I~G~gGiGKTtLa~~v~~~ 153 (359)
|.|.|++|+||||+|+.++..
T Consensus 3 i~~~G~pGsGKsT~a~~la~~ 23 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEE 23 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999987
No 445
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=95.56 E-value=0.012 Score=48.36 Aligned_cols=23 Identities=17% Similarity=0.277 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCc
Q 038454 132 KIGVWGMGGFGKTAIMRHINNRP 154 (359)
Q Consensus 132 vi~I~G~gGiGKTtLa~~v~~~~ 154 (359)
+++|+|+.|+|||||+..+...+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l 23 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKAL 23 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999883
No 446
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=95.56 E-value=0.011 Score=49.67 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.+++|+|++|+|||||++.++..
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~ 26 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAAL 26 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999987
No 447
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=95.54 E-value=0.023 Score=56.02 Aligned_cols=48 Identities=25% Similarity=0.305 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhcC-----CCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEE
Q 038454 115 KKIVKKVWEDLMG-----DKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWV 167 (359)
Q Consensus 115 ~~~~~~l~~~l~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv 167 (359)
++-++++..||.. ...+++.+.|++|+||||.++.+++.+ .|+.+-|.
T Consensus 25 kkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el-----g~~v~Ew~ 77 (519)
T PF03215_consen 25 KKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL-----GFEVQEWI 77 (519)
T ss_pred HHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh-----CCeeEEec
Confidence 3467788888854 235799999999999999999999873 34445554
No 448
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=95.54 E-value=0.02 Score=52.76 Aligned_cols=44 Identities=23% Similarity=0.225 Sum_probs=29.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHH
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLV 176 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~ 176 (359)
.+++.+.|.||+||||+|.+.+-.+. .....++-|+.....++.
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA---~~g~kvLlvStDPAhsL~ 45 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLA---ESGKKVLLVSTDPAHSLG 45 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHH---HcCCcEEEEEeCCCCchH
Confidence 47899999999999999999766632 122335555544433333
No 449
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.52 E-value=0.012 Score=49.18 Aligned_cols=24 Identities=21% Similarity=0.313 Sum_probs=22.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..++.|.|++|+|||||++.+..+
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~ 27 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLED 27 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 367999999999999999999998
No 450
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=95.51 E-value=0.06 Score=52.05 Aligned_cols=90 Identities=16% Similarity=0.205 Sum_probs=55.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCc--cEEEEEeCCCc-CHHHHHHHHHHHhcCC-------CCCCcc----
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFS--DVIWVTVSQPL-DLVKLQAEIAMALKLS-------LTEDED---- 195 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~--~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~---- 195 (359)
-.-++|.|..|+|||||+..+++. ....+.+. .++++-+++.. ...++...+...=... ..+...
T Consensus 141 GQR~gIfgg~G~GKs~L~~~ia~~-~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~ 219 (458)
T TIGR01041 141 GQKLPIFSGSGLPHNELAAQIARQ-ATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERI 219 (458)
T ss_pred CCEEEeeCCCCCCHHHHHHHHHHh-hcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHH
Confidence 356899999999999999999987 32221121 46667676653 5666666665432111 111111
Q ss_pred -HHHHHHHHHHHHh-c-CCcEEEEEecC
Q 038454 196 -KVSRARRLLGKLK-A-KKKFVLILDDI 220 (359)
Q Consensus 196 -~~~~~~~l~~~l~-~-~k~~LlVlDdv 220 (359)
.....-.+.++++ + ++++||++||+
T Consensus 220 ~a~~~a~tiAEyfr~d~G~~VLli~Dsl 247 (458)
T TIGR01041 220 VTPRMALTAAEYLAFEKDMHVLVILTDM 247 (458)
T ss_pred HHHHHHHHHHHHHHHccCCcEEEEEcCh
Confidence 1122234567776 2 58999999999
No 451
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=95.51 E-value=0.14 Score=52.48 Aligned_cols=24 Identities=21% Similarity=0.408 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
-..|+|+|.+|+|||||++.+..-
T Consensus 499 Ge~vaIvG~SGsGKSTL~KLL~gl 522 (709)
T COG2274 499 GEKVAIVGRSGSGKSTLLKLLLGL 522 (709)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999998775
No 452
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=95.49 E-value=0.01 Score=50.59 Aligned_cols=21 Identities=24% Similarity=0.332 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 038454 133 IGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 133 i~I~G~gGiGKTtLa~~v~~~ 153 (359)
|.|.|++|+||||+|+.++..
T Consensus 2 I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999887
No 453
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=95.49 E-value=0.082 Score=50.76 Aligned_cols=25 Identities=32% Similarity=0.555 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.-..++|.|..|+|||||+..++..
T Consensus 156 ~Gq~~~i~G~sG~GKStLl~~i~~~ 180 (434)
T PRK08472 156 KGQKLGIFAGSGVGKSTLMGMIVKG 180 (434)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhc
Confidence 4468999999999999999999876
No 454
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=95.49 E-value=0.13 Score=51.29 Aligned_cols=25 Identities=16% Similarity=0.381 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.-..++|+|+.|+|||||++.+..-
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g~ 384 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTGL 384 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4478999999999999999999866
No 455
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.49 E-value=0.012 Score=51.50 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
-..|+|+|++|+|||||.+.++--
T Consensus 29 GEfvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 29 GEFVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999764
No 456
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.48 E-value=0.083 Score=47.58 Aligned_cols=88 Identities=17% Similarity=0.257 Sum_probs=48.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCc-CHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHH
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPL-DLVKLQAEIAMALKLSLTEDEDKVSRARRLLGKL 207 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 207 (359)
+..+++++|.+|+||||++..+...+ . ... ..+.+++..... ....-+......++.+.....+.......+ +.+
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l-~-~~~-~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l-~~l 149 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQF-H-GKK-KTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRAL-TYF 149 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHH-H-HcC-CeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHH-HHH
Confidence 34799999999999999999887763 1 111 235556554321 222233334444443322223444443333 333
Q ss_pred hc-CCcEEEEEecC
Q 038454 208 KA-KKKFVLILDDI 220 (359)
Q Consensus 208 ~~-~k~~LlVlDdv 220 (359)
.. .+.-++++|..
T Consensus 150 ~~~~~~D~ViIDt~ 163 (270)
T PRK06731 150 KEEARVDYILIDTA 163 (270)
T ss_pred HhcCCCCEEEEECC
Confidence 32 24567888876
No 457
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=95.48 E-value=0.033 Score=52.34 Aligned_cols=76 Identities=16% Similarity=0.267 Sum_probs=44.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHh
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAMALKLSLTEDEDKVSRARRLLGKLK 208 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 208 (359)
.++=+-|||..|.|||.|+-.+|+.+ .+... .......++.++-+.+..-...... +..+.+.+.
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~l-p~~~k----------~R~HFh~Fm~~vh~~l~~~~~~~~~----l~~va~~l~ 125 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSL-PIKRK----------RRVHFHEFMLDVHSRLHQLRGQDDP----LPQVADELA 125 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhC-Ccccc----------ccccccHHHHHHHHHHHHHhCCCcc----HHHHHHHHH
Confidence 35668999999999999999999983 22110 1112223344444433322111122 333444555
Q ss_pred cCCcEEEEEecC
Q 038454 209 AKKKFVLILDDI 220 (359)
Q Consensus 209 ~~k~~LlVlDdv 220 (359)
+ +..||.||.+
T Consensus 126 ~-~~~lLcfDEF 136 (362)
T PF03969_consen 126 K-ESRLLCFDEF 136 (362)
T ss_pred h-cCCEEEEeee
Confidence 5 6779999998
No 458
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=95.47 E-value=0.012 Score=48.99 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 038454 132 KIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 132 vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
+|.|.|..|+||||+|+.+.+.
T Consensus 2 iI~i~G~~GSGKstia~~la~~ 23 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEK 23 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999887
No 459
>PLN02165 adenylate isopentenyltransferase
Probab=95.46 E-value=0.011 Score=54.57 Aligned_cols=30 Identities=20% Similarity=0.191 Sum_probs=25.6
Q ss_pred hcCCCccEEEEEcCCCCcHHHHHHHHHcCc
Q 038454 125 LMGDKVTKIGVWGMGGFGKTAIMRHINNRP 154 (359)
Q Consensus 125 l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 154 (359)
+.+....+|+|+|+.|+||||||..++..+
T Consensus 38 ~~~~~g~iivIiGPTGSGKStLA~~LA~~l 67 (334)
T PLN02165 38 EQNCKDKVVVIMGATGSGKSRLSVDLATRF 67 (334)
T ss_pred ccCCCCCEEEEECCCCCcHHHHHHHHHHHc
Confidence 355556799999999999999999999883
No 460
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=95.46 E-value=0.017 Score=53.17 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
+++.+.|-||+||||+|.+.+-.
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~ 24 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALA 24 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHH
Confidence 68999999999999999887765
No 461
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.44 E-value=0.22 Score=42.03 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=22.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
-..+.|+|++|.|||||.+.+|..
T Consensus 28 Gef~fl~GpSGAGKSTllkLi~~~ 51 (223)
T COG2884 28 GEFVFLTGPSGAGKSTLLKLIYGE 51 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 367999999999999999999987
No 462
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=95.44 E-value=0.031 Score=47.64 Aligned_cols=24 Identities=25% Similarity=0.248 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCc
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNRP 154 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~~ 154 (359)
..|+|.|..|+||||+++.+++.+
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l 27 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLL 27 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999884
No 463
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.43 E-value=0.01 Score=52.90 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCc
Q 038454 132 KIGVWGMGGFGKTAIMRHINNRP 154 (359)
Q Consensus 132 vi~I~G~gGiGKTtLa~~v~~~~ 154 (359)
.|.+.|++|+||||+|+.+...+
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l 23 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKL 23 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 37899999999999999999873
No 464
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=95.43 E-value=0.014 Score=47.89 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..++.|+|.+|+||||+.+.+...
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~ 27 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKE 27 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHH
Confidence 578999999999999999888776
No 465
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=95.43 E-value=0.024 Score=48.53 Aligned_cols=44 Identities=20% Similarity=0.296 Sum_probs=30.1
Q ss_pred ccccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHcCc
Q 038454 107 TTLVGENTKKIVKKVWEDLMGDKVTKIGVWGMGGFGKTAIMRHINNRP 154 (359)
Q Consensus 107 ~~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 154 (359)
..++|.+. .+..+.-..... .-+.++|.+|+|||+||+.+..-+
T Consensus 3 ~dI~GQe~--aKrAL~iAAaG~--h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 3 SDIVGQEE--AKRALEIAAAGG--HHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp CCSSSTHH--HHHHHHHHHHCC----EEEES-CCCTHHHHHHHHHHCS
T ss_pred hhhcCcHH--HHHHHHHHHcCC--CCeEEECCCCCCHHHHHHHHHHhC
Confidence 35778754 555555444443 579999999999999999997653
No 466
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=95.43 E-value=0.67 Score=44.72 Aligned_cols=52 Identities=13% Similarity=0.164 Sum_probs=36.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHHHh
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAMAL 186 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l 186 (359)
.++.|.|.+|+|||++|..++.... ....+ .++|++.- .+..++...++...
T Consensus 195 ~liviag~pg~GKT~~al~ia~~~a-~~~g~-~v~~fSlE--m~~~~l~~Rl~~~~ 246 (421)
T TIGR03600 195 DLIVIGARPSMGKTTLALNIAENVA-LREGK-PVLFFSLE--MSAEQLGERLLASK 246 (421)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHH-HhCCC-cEEEEECC--CCHHHHHHHHHHHH
Confidence 5789999999999999999986621 12233 36666543 46667777666554
No 467
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=95.42 E-value=0.016 Score=51.33 Aligned_cols=20 Identities=30% Similarity=0.419 Sum_probs=17.7
Q ss_pred EEcCCCCcHHHHHHHHHcCc
Q 038454 135 VWGMGGFGKTAIMRHINNRP 154 (359)
Q Consensus 135 I~G~gGiGKTtLa~~v~~~~ 154 (359)
|+|++|+||||+++.+.+.+
T Consensus 1 ViGpaGSGKTT~~~~~~~~~ 20 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWL 20 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHH
Confidence 68999999999999999883
No 468
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=95.42 E-value=0.012 Score=51.14 Aligned_cols=23 Identities=39% Similarity=0.601 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.-|+|+|++|+|||||+.++.++
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~ 28 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGD 28 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcC
Confidence 46899999999999999999987
No 469
>PLN02348 phosphoribulokinase
Probab=95.41 E-value=0.015 Score=54.78 Aligned_cols=35 Identities=29% Similarity=0.358 Sum_probs=27.4
Q ss_pred HHHHHhc-CCCccEEEEEcCCCCcHHHHHHHHHcCc
Q 038454 120 KVWEDLM-GDKVTKIGVWGMGGFGKTAIMRHINNRP 154 (359)
Q Consensus 120 ~l~~~l~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 154 (359)
.+..... .+.+.+|+|.|.+|+||||+|+.+.+.+
T Consensus 38 ~~~~~~~~~~~p~IIGIaG~SGSGKSTfA~~L~~~L 73 (395)
T PLN02348 38 SVVVALAADDGTVVIGLAADSGCGKSTFMRRLTSVF 73 (395)
T ss_pred HHHHhhccCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3333333 3467899999999999999999999874
No 470
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=95.39 E-value=0.05 Score=47.13 Aligned_cols=42 Identities=24% Similarity=0.317 Sum_probs=30.0
Q ss_pred HHHHhcCCCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCc
Q 038454 121 VWEDLMGDKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFS 162 (359)
Q Consensus 121 l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~ 162 (359)
++..+-..+..-..|.|++|+|||||.+.++.-+..-.+.|.
T Consensus 128 li~~ly~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l 169 (308)
T COG3854 128 LIKDLYQNGWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFL 169 (308)
T ss_pred HHHHHHhcCceeeEEecCCCCChHHHHHHHHHHhhccccccC
Confidence 555555555556889999999999999998877433334564
No 471
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=95.38 E-value=0.014 Score=46.69 Aligned_cols=23 Identities=17% Similarity=0.442 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.+++|+|..|+|||||.+.++..
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTS
T ss_pred CEEEEEccCCCccccceeeeccc
Confidence 68999999999999999999887
No 472
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=95.37 E-value=0.066 Score=51.83 Aligned_cols=86 Identities=15% Similarity=0.201 Sum_probs=50.5
Q ss_pred ccEEEEEcCCCCcHHHHHHH-HHcCcccccCCCcc-EEEEEeCCCc-CHHHHHHHHHHHhcC-------CCCCCccHHHH
Q 038454 130 VTKIGVWGMGGFGKTAIMRH-INNRPQEETNEFSD-VIWVTVSQPL-DLVKLQAEIAMALKL-------SLTEDEDKVSR 199 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~-v~~~~~~~~~~F~~-~~wv~~~~~~-~~~~~~~~i~~~l~~-------~~~~~~~~~~~ 199 (359)
-..++|.|..|+|||+||.. +.+. . .-+. ++++-+++.. ...++.+.+...=.. ...+.......
T Consensus 141 GQR~~I~g~~g~GKt~Lal~~I~~q---~--~~dv~cV~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atad~~~~~r~ 215 (485)
T CHL00059 141 GQRELIIGDRQTGKTAVATDTILNQ---K--GQNVICVYVAIGQKASSVAQVVTTLQERGAMEYTIVVAETADSPATLQY 215 (485)
T ss_pred CCEEEeecCCCCCHHHHHHHHHHhc---c--cCCeEEEEEEecCCchHHHHHHHHhhcccchhceEEEEeCCCCCHHHHH
Confidence 35799999999999999654 5554 1 2343 4777777654 456666666543211 11111111111
Q ss_pred -----HHHHHHHHhc-CCcEEEEEecC
Q 038454 200 -----ARRLLGKLKA-KKKFVLILDDI 220 (359)
Q Consensus 200 -----~~~l~~~l~~-~k~~LlVlDdv 220 (359)
...+.++++. ++++|||+||+
T Consensus 216 ~ap~~a~aiAEyfr~~G~~VLlv~Ddl 242 (485)
T CHL00059 216 LAPYTGAALAEYFMYRGRHTLIIYDDL 242 (485)
T ss_pred HHHHHHhhHHHHHHHcCCCEEEEEcCh
Confidence 1224445544 49999999999
No 473
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=95.36 E-value=0.06 Score=50.63 Aligned_cols=41 Identities=22% Similarity=0.346 Sum_probs=30.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQP 172 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~ 172 (359)
.++.|.|.+|+|||.||..++.++ ..........+++.+..
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l-~~~~~~~~~~~l~~n~~ 42 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKEL-QNSEEGKKVLYLCGNHP 42 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHh-hccccCCceEEEEecch
Confidence 479999999999999999999983 11344455667766554
No 474
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=95.35 E-value=0.014 Score=48.68 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..|.|+|++|+||||+|+.+++.
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~ 25 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQA 25 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35889999999999999999987
No 475
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=95.34 E-value=0.022 Score=52.82 Aligned_cols=48 Identities=25% Similarity=0.291 Sum_probs=35.0
Q ss_pred cccccccch-HHHHHHHHHHhcCCC--ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 106 TTTLVGENT-KKIVKKVWEDLMGDK--VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 106 ~~~~vGr~~-~~~~~~l~~~l~~~~--~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
...+||... .+..--++++...++ -+.|.+.|++|.|||+||..+++.
T Consensus 23 ~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~e 73 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKE 73 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHH
T ss_pred cccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHH
Confidence 468999866 334445666666664 478999999999999999999998
No 476
>PRK13343 F0F1 ATP synthase subunit alpha; Provisional
Probab=95.33 E-value=0.062 Score=52.39 Aligned_cols=86 Identities=16% Similarity=0.212 Sum_probs=51.0
Q ss_pred ccEEEEEcCCCCcHHHHH-HHHHcCcccccCCCcc-EEEEEeCCCc-CHHHHHHHHHHHhcCC-------CCCCccHHH-
Q 038454 130 VTKIGVWGMGGFGKTAIM-RHINNRPQEETNEFSD-VIWVTVSQPL-DLVKLQAEIAMALKLS-------LTEDEDKVS- 198 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~~F~~-~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~- 198 (359)
-..++|.|.+|+|||||| ..+.+. ..-+. ++++-+++.. ...++...+...=... ..+......
T Consensus 162 GQR~~I~g~~g~GKt~Lal~~i~~~-----~~~dv~~V~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atsd~~~~~r~ 236 (502)
T PRK13343 162 GQRELIIGDRQTGKTAIAIDAIINQ-----KDSDVICVYVAIGQKASAVARVIETLREHGALEYTTVVVAEASDPPGLQY 236 (502)
T ss_pred CCEEEeeCCCCCCccHHHHHHHHhh-----cCCCEEEEEEEeccChHHHHHHHHHHHhcCccceeEEEEecccccHHHHH
Confidence 357999999999999996 556654 12344 3777777764 4566666655432111 111111111
Q ss_pred ----HHHHHHHHHhc-CCcEEEEEecC
Q 038454 199 ----RARRLLGKLKA-KKKFVLILDDI 220 (359)
Q Consensus 199 ----~~~~l~~~l~~-~k~~LlVlDdv 220 (359)
....+.+++++ ++++|||+||+
T Consensus 237 ~ap~~a~aiAEyfrd~G~~VLlv~Ddl 263 (502)
T PRK13343 237 LAPFAGCAIAEYFRDQGQDALIVYDDL 263 (502)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEecch
Confidence 11234455543 59999999999
No 477
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.33 E-value=0.013 Score=49.72 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCc
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNRP 154 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~~ 154 (359)
+.|.+.|.+|+||||+|+++++.+
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHH
Confidence 568899999999999999998873
No 478
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=95.32 E-value=0.096 Score=50.95 Aligned_cols=86 Identities=19% Similarity=0.223 Sum_probs=53.0
Q ss_pred ccEEEEEcCCCCcHHHHH-HHHHcCcccccCCCcc-EEEEEeCCCc-CHHHHHHHHHHHhcC-------CCCCCccHHH-
Q 038454 130 VTKIGVWGMGGFGKTAIM-RHINNRPQEETNEFSD-VIWVTVSQPL-DLVKLQAEIAMALKL-------SLTEDEDKVS- 198 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~~F~~-~~wv~~~~~~-~~~~~~~~i~~~l~~-------~~~~~~~~~~- 198 (359)
-..++|.|..|+|||||| ..+.++ . .-+. ++++-+++.. ...++.+.+...=.. ...+......
T Consensus 162 GQR~~Ifg~~g~GKT~Lal~~I~~q-~----~~dv~~V~~~IGeR~rev~e~i~~l~~~~~l~~tvvV~atsd~p~~~r~ 236 (497)
T TIGR03324 162 GQRELILGDRQTGKTAIAIDTILNQ-K----GRNVLCIYCAIGQRASAVAKVVANLREHGAMDYTIVVVTEGNDPPGLQY 236 (497)
T ss_pred CCEEEeecCCCCCHHHHHHHHHHHh-c----CCCcEEEEEEeccCcHHHHHHHHHhhhcCCcceeEEEEeCCCCCHHHHH
Confidence 357999999999999997 467776 1 2343 6788887764 456666666554211 1111111111
Q ss_pred ----HHHHHHHHHhc-CCcEEEEEecC
Q 038454 199 ----RARRLLGKLKA-KKKFVLILDDI 220 (359)
Q Consensus 199 ----~~~~l~~~l~~-~k~~LlVlDdv 220 (359)
....+.+++++ ++++|||+||+
T Consensus 237 ~ap~~a~aiAEyfrd~G~~VLlv~Ddl 263 (497)
T TIGR03324 237 IAPYAATSIGEHFMEQGRDVLIVYDDL 263 (497)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEcCh
Confidence 12234455543 59999999999
No 479
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=95.32 E-value=0.066 Score=51.68 Aligned_cols=86 Identities=13% Similarity=0.235 Sum_probs=47.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCC-CcCHHHHHHHHHHHhcC-------CCCCCccHH----
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQ-PLDLVKLQAEIAMALKL-------SLTEDEDKV---- 197 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~-------~~~~~~~~~---- 197 (359)
-..++|.|..|+|||||++.+... . . . +......++. .....++....+..-.. ...+.....
T Consensus 163 Gq~~~I~G~sG~GKStLl~~I~~~-~--~-~-~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~d~~p~~r~~~ 237 (440)
T TIGR01026 163 GQRIGIFAGSGVGKSTLLGMIARN-T--E-A-DVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATSDQSPLLRLKG 237 (440)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC-C--C-C-CEEEEEEEeecchHHHHHHHHHhcccccceEEEEEECCCCCHHHHHHH
Confidence 457899999999999999988877 2 1 1 2223333333 23444554444332111 111111111
Q ss_pred -HHHHHHHHHHhc-CCcEEEEEecC
Q 038454 198 -SRARRLLGKLKA-KKKFVLILDDI 220 (359)
Q Consensus 198 -~~~~~l~~~l~~-~k~~LlVlDdv 220 (359)
...-.+.+++.+ ++++||++||+
T Consensus 238 ~~~a~t~AE~frd~G~~Vll~~Dsl 262 (440)
T TIGR01026 238 AYVATAIAEYFRDQGKDVLLLMDSV 262 (440)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEeCh
Confidence 112223344433 58999999998
No 480
>PRK13695 putative NTPase; Provisional
Probab=95.31 E-value=0.017 Score=48.46 Aligned_cols=22 Identities=41% Similarity=0.619 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 038454 132 KIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 132 vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.|+|+|.+|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999887
No 481
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=95.30 E-value=0.013 Score=53.65 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.+|.+.|++|+||||+|+.+..+
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~ 25 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAK 25 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHH
Confidence 57889999999999999999887
No 482
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.29 E-value=0.1 Score=49.05 Aligned_cols=91 Identities=16% Similarity=0.259 Sum_probs=60.3
Q ss_pred hcCCCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEe-CCCcCHHHHHHHHHHHhcCCC-------CCCccH
Q 038454 125 LMGDKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTV-SQPLDLVKLQAEIAMALKLSL-------TEDEDK 196 (359)
Q Consensus 125 l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~-~~~~~~~~~~~~i~~~l~~~~-------~~~~~~ 196 (359)
|.-+.-.-|+|..-+|+|||||.-++++. ..+|..+-.-+ -+...+.++..+.+..-+... .+.+..
T Consensus 158 lT~G~GQRiGIFAgsGVGKStLLgMiar~-----t~aDv~ViaLIGERGREVrEFIE~~Lg~egl~rsViVvATSD~s~l 232 (441)
T COG1157 158 LTCGKGQRIGIFAGSGVGKSTLLGMIARN-----TEADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESAL 232 (441)
T ss_pred cccccCceeEEEecCCCcHHHHHHHHhcc-----ccCCEEEEEEeeccchhHHHHHHHhcchhhccceEEEEECCCCCHH
Confidence 33344567999999999999999999987 34664333223 344577888887777664421 111111
Q ss_pred -----HHHHHHHHHHHhc-CCcEEEEEecC
Q 038454 197 -----VSRARRLLGKLKA-KKKFVLILDDI 220 (359)
Q Consensus 197 -----~~~~~~l~~~l~~-~k~~LlVlDdv 220 (359)
...+..+.+++++ ++++||++|.+
T Consensus 233 ~R~~aa~~At~IAEyFRDqG~~VLL~mDSl 262 (441)
T COG1157 233 MRLKAAFTATTIAEYFRDQGKRVLLIMDSL 262 (441)
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEEeecH
Confidence 2233456677766 69999999999
No 483
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=95.29 E-value=0.064 Score=52.05 Aligned_cols=89 Identities=18% Similarity=0.225 Sum_probs=55.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCc-CHHHHHHHHHHHhcC--------------CCCCCc
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPL-DLVKLQAEIAMALKL--------------SLTEDE 194 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~--------------~~~~~~ 194 (359)
-..++|.|.+|+|||+|+..+.... . ..+=+.++++-+++.. ...++...++..-.. ...+..
T Consensus 161 GQR~gIfgg~GvGKs~L~~~~~~~~-~-~~~~dv~V~~lIGERgrEv~efi~~~~~~~~~~~~~~~~~rsvvv~atsd~p 238 (494)
T CHL00060 161 GGKIGLFGGAGVGKTVLIMELINNI-A-KAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEP 238 (494)
T ss_pred CCEEeeecCCCCChhHHHHHHHHHH-H-HhcCCeEEEEEeccCchHHHHHHHHHHhcCccccCcccccceEEEEECCCCC
Confidence 3579999999999999999888762 1 1112667888887654 456677666651110 000111
Q ss_pred c-----HHHHHHHHHHHHhc-C-CcEEEEEecC
Q 038454 195 D-----KVSRARRLLGKLKA-K-KKFVLILDDI 220 (359)
Q Consensus 195 ~-----~~~~~~~l~~~l~~-~-k~~LlVlDdv 220 (359)
. .....-.+.++++. + +++||++||+
T Consensus 239 ~~~R~~a~~~A~tiAEyfrd~g~~~VLll~Dsl 271 (494)
T CHL00060 239 PGARMRVGLTALTMAEYFRDVNKQDVLLFIDNI 271 (494)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCEEEEcccc
Confidence 1 11223445677754 3 4999999999
No 484
>PRK14531 adenylate kinase; Provisional
Probab=95.28 E-value=0.015 Score=49.15 Aligned_cols=23 Identities=17% Similarity=0.208 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..|.|.|++|+||||+++.++..
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~ 25 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAA 25 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999887
No 485
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=95.28 E-value=0.064 Score=54.04 Aligned_cols=54 Identities=13% Similarity=0.045 Sum_probs=33.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHH
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIA 183 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 183 (359)
.++..|.|.+|.||||++..+...+.+....-...+.+......-...+...+.
T Consensus 167 ~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~ 220 (615)
T PRK10875 167 RRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLG 220 (615)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHH
Confidence 368999999999999999988876322111112355555555444445544443
No 486
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=95.28 E-value=0.014 Score=52.84 Aligned_cols=24 Identities=29% Similarity=0.643 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCc
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNRP 154 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~~ 154 (359)
+.|+|+|-||+||||++..++..+
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~L 24 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAAL 24 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHH
Confidence 468999999999999999988774
No 487
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=95.28 E-value=0.63 Score=45.12 Aligned_cols=53 Identities=15% Similarity=0.101 Sum_probs=35.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHHHh
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAMAL 186 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l 186 (359)
-..+.|.|.+|+|||+++.+++.+.. ..... .++|++... +..++...++...
T Consensus 195 G~l~vi~g~pg~GKT~~~l~~a~~~a-~~~g~-~vl~~SlEm--~~~~i~~R~~~~~ 247 (434)
T TIGR00665 195 SDLIILAARPSMGKTAFALNIAENAA-IKEGK-PVAFFSLEM--SAEQLAMRMLSSE 247 (434)
T ss_pred CeEEEEEeCCCCChHHHHHHHHHHHH-HhCCC-eEEEEeCcC--CHHHHHHHHHHHh
Confidence 36899999999999999999987722 22222 466765543 5556666655543
No 488
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=95.27 E-value=0.029 Score=47.42 Aligned_cols=35 Identities=26% Similarity=0.345 Sum_probs=27.3
Q ss_pred HHHHHHhcC-CCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 119 KKVWEDLMG-DKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 119 ~~l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..++.++.. .....|+++|.+|+|||||+..+...
T Consensus 5 ~~~~~~~~~~~~~~~i~ivG~~~~GKTsli~~l~~~ 40 (184)
T smart00178 5 YDILASLGLWNKHAKILFLGLDNAGKTTLLHMLKND 40 (184)
T ss_pred HHHHHHhccccccCEEEEECCCCCCHHHHHHHHhcC
Confidence 456666643 44567899999999999999998865
No 489
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=95.27 E-value=0.018 Score=44.65 Aligned_cols=21 Identities=14% Similarity=0.506 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 038454 133 IGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 133 i~I~G~gGiGKTtLa~~v~~~ 153 (359)
|+|+|++|+|||||...+.+.
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 789999999999999999974
No 490
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.26 E-value=0.29 Score=49.16 Aligned_cols=68 Identities=24% Similarity=0.428 Sum_probs=43.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAMALKLSLTEDEDKVSRARRLLGKLKAK 210 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 210 (359)
.=|.++|++|+|||-||.+++..+ ..-+++|-.+ +++. ..+|. + ++..+.+...-+.-
T Consensus 702 ~giLLyGppGcGKT~la~a~a~~~--------~~~fisvKGP----ElL~---KyIGa------S-Eq~vR~lF~rA~~a 759 (952)
T KOG0735|consen 702 TGILLYGPPGCGKTLLASAIASNS--------NLRFISVKGP----ELLS---KYIGA------S-EQNVRDLFERAQSA 759 (952)
T ss_pred cceEEECCCCCcHHHHHHHHHhhC--------CeeEEEecCH----HHHH---HHhcc------c-HHHHHHHHHHhhcc
Confidence 348999999999999999998872 1335666554 1111 11222 2 23344444443334
Q ss_pred CcEEEEEecC
Q 038454 211 KKFVLILDDI 220 (359)
Q Consensus 211 k~~LlVlDdv 220 (359)
++++|.+|.+
T Consensus 760 ~PCiLFFDEf 769 (952)
T KOG0735|consen 760 KPCILFFDEF 769 (952)
T ss_pred CCeEEEeccc
Confidence 9999999998
No 491
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=95.26 E-value=0.014 Score=49.32 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 038454 132 KIGVWGMGGFGKTAIMRHINN 152 (359)
Q Consensus 132 vi~I~G~gGiGKTtLa~~v~~ 152 (359)
+|+|+|+.|+||||+++.+.+
T Consensus 1 ii~itG~~gsGKst~~~~l~~ 21 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999876
No 492
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=95.25 E-value=0.043 Score=48.98 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCc
Q 038454 132 KIGVWGMGGFGKTAIMRHINNRP 154 (359)
Q Consensus 132 vi~I~G~gGiGKTtLa~~v~~~~ 154 (359)
+|+|.|.+|+||||+++.+.+.+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l 23 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIF 23 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998764
No 493
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=95.25 E-value=0.07 Score=51.28 Aligned_cols=86 Identities=14% Similarity=0.265 Sum_probs=47.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCC-CcCHHHHHHHHHHHhcC-------CCCCCccHHH--
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQ-PLDLVKLQAEIAMALKL-------SLTEDEDKVS-- 198 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~-------~~~~~~~~~~-- 198 (359)
.-..++|+|..|+|||||++.+++. ... +.++...+.. ..+..++.+.++..-.. ... +.+...
T Consensus 174 ~Gqri~I~G~sG~GKTTLL~~Ia~~---~~~--d~iv~g~Igerg~ev~e~~~~~~~~~~~~~tvVv~~~a-d~~~~~r~ 247 (455)
T PRK07960 174 RGQRMGLFAGSGVGKSVLLGMMARY---TQA--DVIVVGLIGERGREVKDFIENILGAEGRARSVVIAAPA-DVSPLLRM 247 (455)
T ss_pred CCcEEEEECCCCCCccHHHHHHhCC---CCC--CEEEEEEEEECCeEHHHHHHhhcCcCCCceEEEEEECC-CCCHHHHH
Confidence 3467999999999999999988876 211 2222222222 23445554444322110 111 111111
Q ss_pred ----HHHHHHHHHhc-CCcEEEEEecC
Q 038454 199 ----RARRLLGKLKA-KKKFVLILDDI 220 (359)
Q Consensus 199 ----~~~~l~~~l~~-~k~~LlVlDdv 220 (359)
..-.+.+++++ ++++|+++||+
T Consensus 248 ~~~~~a~tiAEyfrd~G~~Vll~~Dsl 274 (455)
T PRK07960 248 QGAAYATRIAEDFRDRGQHVLLIMDSL 274 (455)
T ss_pred HHHHHHHHHHHHHHHcCCCeEEEecch
Confidence 12224445543 59999999999
No 494
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=95.23 E-value=0.016 Score=49.75 Aligned_cols=24 Identities=25% Similarity=0.356 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..+|+|+|+.|+||||+|+.+.+.
T Consensus 2 ~~iIglTG~igsGKStva~~~~~~ 25 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAEL 25 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHHc
Confidence 368999999999999999887764
No 495
>PRK08356 hypothetical protein; Provisional
Probab=95.19 E-value=0.02 Score=49.07 Aligned_cols=21 Identities=29% Similarity=0.422 Sum_probs=19.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHH
Q 038454 131 TKIGVWGMGGFGKTAIMRHIN 151 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~ 151 (359)
.+|+|.|++|+||||+|+.+.
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999984
No 496
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=95.19 E-value=0.017 Score=47.34 Aligned_cols=22 Identities=36% Similarity=0.513 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 038454 132 KIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 132 vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.|+++|.+|+|||||+..+.+.
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~ 23 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYD 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4889999999999999999875
No 497
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=95.18 E-value=0.19 Score=52.25 Aligned_cols=24 Identities=21% Similarity=0.199 Sum_probs=20.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHc
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINN 152 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~ 152 (359)
+.+++.|+|+.+.||||+.+.+.-
T Consensus 326 ~~~~~iITGpN~gGKTt~lktigl 349 (782)
T PRK00409 326 DKTVLVITGPNTGGKTVTLKTLGL 349 (782)
T ss_pred CceEEEEECCCCCCcHHHHHHHHH
Confidence 457899999999999999998754
No 498
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=95.17 E-value=0.018 Score=47.80 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
+.|.++|+.|+||||+.+.+++.
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~ 25 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKA 25 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHH
Confidence 45899999999999999999988
No 499
>PRK06851 hypothetical protein; Provisional
Probab=95.17 E-value=0.025 Score=53.01 Aligned_cols=43 Identities=16% Similarity=0.142 Sum_probs=31.3
Q ss_pred CCCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCC
Q 038454 127 GDKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQ 171 (359)
Q Consensus 127 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~ 171 (359)
.+..+++.|.|.+|+|||||++.+.+.+ ....|+.-.+.|.+.
T Consensus 27 ~~~~~~~il~G~pGtGKStl~~~i~~~~--~~~g~~Ve~~~~~~d 69 (367)
T PRK06851 27 DGANRIFILKGGPGTGKSTLMKKIGEEF--LEKGYDVEFLHCSSD 69 (367)
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEEcCCC
Confidence 3456899999999999999999999884 223465544544433
No 500
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.15 E-value=0.025 Score=48.81 Aligned_cols=24 Identities=17% Similarity=0.045 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.+++.|.|+.|.||||+.+.+..-
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~ 52 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALL 52 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999988643
Done!