Query 038454
Match_columns 359
No_of_seqs 349 out of 2632
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 19:31:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038454.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038454hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 7.2E-40 2.5E-44 323.6 18.3 231 110-354 131-406 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 8.2E-34 2.8E-38 304.7 21.7 248 102-358 119-400 (1249)
3 1vt4_I APAF-1 related killer D 100.0 9.5E-34 3.2E-38 287.3 14.4 222 108-357 129-391 (1221)
4 1z6t_A APAF-1, apoptotic prote 100.0 6.3E-32 2.2E-36 269.5 19.4 243 103-356 120-398 (591)
5 2fna_A Conserved hypothetical 99.6 1.7E-13 5.9E-18 127.0 18.8 171 104-293 10-255 (357)
6 2qen_A Walker-type ATPase; unk 99.5 1.8E-13 6.3E-18 126.6 17.9 175 102-291 7-249 (350)
7 1w5s_A Origin recognition comp 99.5 2.6E-13 9E-18 128.6 18.4 226 106-347 21-320 (412)
8 2qby_A CDC6 homolog 1, cell di 99.4 9E-12 3.1E-16 116.7 18.6 199 106-307 19-272 (386)
9 2qby_B CDC6 homolog 3, cell di 99.4 2.5E-11 8.6E-16 113.8 20.2 220 106-345 19-294 (384)
10 2v1u_A Cell division control p 99.4 6.1E-11 2.1E-15 111.1 22.3 221 106-345 18-300 (387)
11 1fnn_A CDC6P, cell division co 99.4 2.4E-11 8.1E-16 114.1 18.7 177 106-288 16-247 (389)
12 1njg_A DNA polymerase III subu 99.3 3.8E-11 1.3E-15 104.6 16.4 172 106-291 22-231 (250)
13 2chg_A Replication factor C sm 99.3 8.8E-11 3E-15 101.0 17.8 162 106-290 16-206 (226)
14 3qfl_A MLA10; coiled-coil, (CC 99.2 3.3E-11 1.1E-15 92.9 6.7 59 2-60 22-81 (115)
15 1sxj_B Activator 1 37 kDa subu 99.1 7.9E-10 2.7E-14 100.9 15.0 161 106-288 20-210 (323)
16 1iqp_A RFCS; clamp loader, ext 99.0 4.2E-09 1.4E-13 96.3 13.4 162 106-290 24-214 (327)
17 3te6_A Regulatory protein SIR3 98.9 2.7E-08 9.4E-13 90.3 15.8 146 107-255 20-211 (318)
18 2chq_A Replication factor C sm 98.8 4.9E-08 1.7E-12 88.7 14.9 158 106-288 16-204 (319)
19 1jbk_A CLPB protein; beta barr 98.8 2E-08 6.9E-13 83.9 11.0 47 106-154 21-67 (195)
20 1hqc_A RUVB; extended AAA-ATPa 98.8 2.6E-07 9E-12 84.2 18.8 174 106-291 11-214 (324)
21 1jr3_A DNA polymerase III subu 98.8 1.1E-07 3.7E-12 88.5 15.5 166 106-288 15-221 (373)
22 1sxj_D Activator 1 41 kDa subu 98.7 2.3E-07 7.8E-12 85.7 15.9 169 106-287 36-234 (353)
23 3bos_A Putative DNA replicatio 98.7 7.3E-08 2.5E-12 83.7 10.1 151 107-289 28-218 (242)
24 3pvs_A Replication-associated 98.6 5.1E-07 1.8E-11 86.2 14.5 155 106-288 25-215 (447)
25 3h4m_A Proteasome-activating n 98.6 1.3E-06 4.5E-11 78.1 16.1 175 106-308 16-259 (285)
26 2z4s_A Chromosomal replication 98.6 2.1E-06 7.2E-11 81.9 17.6 179 107-307 105-332 (440)
27 1sxj_E Activator 1 40 kDa subu 98.6 8.6E-07 2.9E-11 81.9 14.3 173 106-289 13-238 (354)
28 1sxj_A Activator 1 95 kDa subu 98.6 1E-06 3.4E-11 85.9 14.9 166 106-287 38-252 (516)
29 3uk6_A RUVB-like 2; hexameric 98.5 1.1E-06 3.7E-11 81.7 13.5 175 106-287 43-302 (368)
30 3pfi_A Holliday junction ATP-d 98.5 6.4E-06 2.2E-10 75.6 17.6 171 105-288 27-227 (338)
31 1l8q_A Chromosomal replication 98.4 7.4E-06 2.5E-10 74.7 16.4 153 107-284 11-204 (324)
32 3d8b_A Fidgetin-like protein 1 98.4 1.7E-05 5.7E-10 73.5 18.7 158 106-290 83-297 (357)
33 1xwi_A SKD1 protein; VPS4B, AA 98.4 2E-05 7E-10 71.8 19.0 157 107-289 12-224 (322)
34 2qz4_A Paraplegin; AAA+, SPG7, 98.4 2.9E-05 9.9E-10 68.2 19.4 158 107-288 6-222 (262)
35 1a5t_A Delta prime, HOLB; zinc 98.4 8.5E-06 2.9E-10 74.8 16.3 145 116-287 9-204 (334)
36 2p65_A Hypothetical protein PF 98.4 5.6E-07 1.9E-11 74.7 7.4 46 106-153 21-66 (187)
37 1sxj_C Activator 1 40 kDa subu 98.4 8.1E-06 2.8E-10 75.0 15.8 157 107-286 25-210 (340)
38 3u61_B DNA polymerase accessor 98.4 7.2E-06 2.5E-10 74.7 15.0 154 106-287 25-215 (324)
39 3b9p_A CG5977-PA, isoform A; A 98.3 5.3E-05 1.8E-09 68.0 19.7 156 106-288 20-233 (297)
40 3eie_A Vacuolar protein sortin 98.3 1.1E-05 3.9E-10 73.5 15.0 156 106-288 17-228 (322)
41 1d2n_A N-ethylmaleimide-sensit 98.3 3.3E-05 1.1E-09 68.5 17.1 46 106-153 32-87 (272)
42 2qp9_X Vacuolar protein sortin 98.3 1.8E-05 6.1E-10 73.3 15.3 156 106-288 50-261 (355)
43 3vfd_A Spastin; ATPase, microt 98.3 7.6E-05 2.6E-09 69.9 19.7 157 106-289 114-327 (389)
44 4b4t_J 26S protease regulatory 98.2 1.4E-05 4.8E-10 74.4 12.9 176 107-308 148-390 (405)
45 2w58_A DNAI, primosome compone 98.2 5.4E-06 1.9E-10 70.1 9.3 60 107-169 25-90 (202)
46 3pxg_A Negative regulator of g 98.2 1.5E-05 5.1E-10 76.6 12.9 128 107-255 180-338 (468)
47 3syl_A Protein CBBX; photosynt 98.2 1.3E-05 4.3E-10 72.5 11.7 26 128-153 65-90 (309)
48 2zan_A Vacuolar protein sortin 98.2 4.7E-05 1.6E-09 72.6 16.1 157 106-288 133-345 (444)
49 3ec2_A DNA replication protein 98.1 4.8E-06 1.6E-10 69.1 7.6 87 115-220 20-109 (180)
50 3n70_A Transport activator; si 98.1 3.1E-06 1E-10 67.8 6.2 44 108-153 2-47 (145)
51 4b4t_L 26S protease subunit RP 98.1 3.6E-05 1.2E-09 72.7 14.0 149 107-281 181-387 (437)
52 4b4t_I 26S protease regulatory 98.1 3.7E-05 1.3E-09 71.9 13.8 149 107-281 182-388 (437)
53 1qvr_A CLPB protein; coiled co 98.1 3E-05 1E-09 80.0 14.6 132 107-254 170-344 (854)
54 4b4t_H 26S protease regulatory 98.1 4.4E-05 1.5E-09 72.1 13.6 127 129-281 242-415 (467)
55 3cf0_A Transitional endoplasmi 98.1 0.00012 4E-09 66.1 16.1 149 107-283 15-223 (301)
56 1lv7_A FTSH; alpha/beta domain 98.1 0.0003 1E-08 61.7 18.1 48 106-153 11-68 (257)
57 4b4t_M 26S protease regulatory 98.1 3.1E-05 1.1E-09 73.1 12.3 126 129-280 214-386 (434)
58 1r6b_X CLPA protein; AAA+, N-t 98.0 7.9E-05 2.7E-09 76.0 15.8 133 107-255 186-362 (758)
59 4b4t_K 26S protease regulatory 98.0 8.3E-05 2.9E-09 70.1 13.5 25 129-153 205-229 (428)
60 3pxi_A Negative regulator of g 98.0 7.6E-05 2.6E-09 76.1 14.0 130 107-255 180-338 (758)
61 2gno_A DNA polymerase III, gam 97.9 0.00012 4.1E-09 66.1 12.3 121 117-255 5-152 (305)
62 3hu3_A Transitional endoplasmi 97.9 0.00037 1.3E-08 67.1 15.8 153 107-287 204-414 (489)
63 1in4_A RUVB, holliday junction 97.8 0.00075 2.6E-08 61.7 17.2 70 236-308 174-251 (334)
64 3cf2_A TER ATPase, transitiona 97.8 0.00067 2.3E-08 68.8 17.9 149 107-281 204-407 (806)
65 2ce7_A Cell division protein F 97.8 0.001 3.5E-08 63.6 17.7 48 106-153 15-72 (476)
66 3co5_A Putative two-component 97.7 3.5E-05 1.2E-09 61.4 5.1 45 107-153 4-50 (143)
67 4fcw_A Chaperone protein CLPB; 97.7 0.00017 5.9E-09 64.9 10.1 45 107-153 17-70 (311)
68 1ojl_A Transcriptional regulat 97.7 0.00012 4E-09 66.2 8.8 45 107-153 2-48 (304)
69 2kjq_A DNAA-related protein; s 97.7 4.7E-05 1.6E-09 61.2 5.4 40 129-171 35-74 (149)
70 2vhj_A Ntpase P4, P4; non- hyd 97.4 0.00011 3.6E-09 66.4 4.4 66 131-220 124-191 (331)
71 3hr8_A Protein RECA; alpha and 97.4 0.00057 2E-08 62.8 9.0 83 130-220 61-148 (356)
72 2qgz_A Helicase loader, putati 97.4 0.00026 8.8E-09 64.0 6.4 47 107-153 124-175 (308)
73 1n0w_A DNA repair protein RAD5 97.3 0.00091 3.1E-08 57.7 9.7 89 130-220 24-128 (243)
74 2z43_A DNA repair and recombin 97.3 0.00082 2.8E-08 61.1 9.5 90 130-220 107-212 (324)
75 1ypw_A Transitional endoplasmi 97.3 0.0021 7.3E-08 65.7 13.4 45 107-153 204-261 (806)
76 3io5_A Recombination and repai 97.3 0.00095 3.2E-08 60.0 9.0 82 132-220 30-120 (333)
77 3pxi_A Negative regulator of g 97.3 0.00035 1.2E-08 71.2 7.1 45 107-153 491-544 (758)
78 1v5w_A DMC1, meiotic recombina 97.3 0.0016 5.3E-08 59.8 10.8 90 130-220 122-228 (343)
79 2cvh_A DNA repair and recombin 97.2 0.0015 5.2E-08 55.3 9.7 83 130-220 20-114 (220)
80 2i1q_A DNA repair and recombin 97.2 0.001 3.6E-08 60.3 8.9 90 130-220 98-213 (322)
81 2zr9_A Protein RECA, recombina 97.2 0.00093 3.2E-08 61.4 8.5 83 130-220 61-148 (349)
82 2w0m_A SSO2452; RECA, SSPF, un 97.2 0.00095 3.3E-08 57.0 8.0 45 131-180 24-68 (235)
83 1xp8_A RECA protein, recombina 97.2 0.0012 3.9E-08 61.1 8.8 83 130-220 74-161 (366)
84 1u94_A RECA protein, recombina 97.1 0.0013 4.5E-08 60.5 8.3 83 130-220 63-150 (356)
85 3t15_A Ribulose bisphosphate c 97.0 0.0012 4.2E-08 59.0 7.2 25 129-153 35-59 (293)
86 3dm5_A SRP54, signal recogniti 97.0 0.0043 1.5E-07 58.5 10.7 26 129-154 99-124 (443)
87 3c8u_A Fructokinase; YP_612366 96.9 0.001 3.5E-08 56.3 5.5 37 117-153 7-45 (208)
88 2r62_A Cell division protease 96.8 0.00051 1.8E-08 60.5 3.2 48 106-153 10-67 (268)
89 4a74_A DNA repair and recombin 96.8 0.0052 1.8E-07 52.3 9.5 45 131-175 26-73 (231)
90 1ofh_A ATP-dependent HSL prote 96.8 0.00071 2.4E-08 60.7 4.1 45 107-153 15-73 (310)
91 2bjv_A PSP operon transcriptio 96.8 0.0016 5.4E-08 57.2 5.9 45 107-153 6-52 (265)
92 3m6a_A ATP-dependent protease 96.8 0.0078 2.7E-07 58.7 11.2 45 107-153 81-131 (543)
93 2px0_A Flagellar biosynthesis 96.8 0.0041 1.4E-07 55.7 8.5 86 129-219 104-190 (296)
94 3bh0_A DNAB-like replicative h 96.7 0.0064 2.2E-07 55.0 9.6 50 130-184 68-117 (315)
95 3lda_A DNA repair protein RAD5 96.7 0.0058 2E-07 57.1 9.4 90 130-220 178-282 (400)
96 3ice_A Transcription terminati 96.7 0.0008 2.7E-08 62.1 3.3 100 120-220 163-270 (422)
97 3kl4_A SRP54, signal recogniti 96.7 0.0083 2.9E-07 56.5 10.2 26 129-154 96-121 (433)
98 1qhx_A CPT, protein (chloramph 96.7 0.00095 3.3E-08 54.7 3.2 23 131-153 4-26 (178)
99 1r6b_X CLPA protein; AAA+, N-t 96.6 0.0083 2.8E-07 61.0 10.7 45 107-153 458-511 (758)
100 2x8a_A Nuclear valosin-contain 96.6 0.0039 1.3E-07 55.2 7.1 21 133-153 47-67 (274)
101 3lw7_A Adenylate kinase relate 96.6 0.0011 3.7E-08 53.9 3.1 22 131-153 2-23 (179)
102 2r6a_A DNAB helicase, replicat 96.6 0.034 1.2E-06 52.8 14.1 48 131-182 204-251 (454)
103 3kb2_A SPBC2 prophage-derived 96.6 0.0011 3.8E-08 53.8 3.2 23 131-153 2-24 (173)
104 2xxa_A Signal recognition part 96.6 0.02 6.7E-07 54.1 12.1 26 129-154 99-124 (433)
105 1rz3_A Hypothetical protein rb 96.6 0.0024 8.1E-08 53.7 5.2 37 117-153 6-45 (201)
106 1vma_A Cell division protein F 96.6 0.0099 3.4E-07 53.4 9.5 88 129-220 103-195 (306)
107 2c9o_A RUVB-like 1; hexameric 96.6 0.0021 7.3E-08 61.3 5.4 48 106-153 36-86 (456)
108 1sky_E F1-ATPase, F1-ATP synth 96.5 0.0053 1.8E-07 58.2 7.8 88 131-220 152-254 (473)
109 1ly1_A Polynucleotide kinase; 96.5 0.0013 4.5E-08 53.8 3.3 22 131-152 3-24 (181)
110 2dr3_A UPF0273 protein PH0284; 96.5 0.0077 2.6E-07 51.8 8.3 38 131-171 24-61 (247)
111 1g8p_A Magnesium-chelatase 38 96.5 0.0012 4.2E-08 60.3 3.3 46 106-153 23-68 (350)
112 2q6t_A DNAB replication FORK h 96.5 0.031 1.1E-06 53.0 13.1 51 130-184 200-250 (444)
113 1ixz_A ATP-dependent metallopr 96.5 0.004 1.4E-07 54.2 6.3 47 107-153 16-72 (254)
114 4a1f_A DNAB helicase, replicat 96.5 0.009 3.1E-07 54.4 8.7 49 131-184 47-95 (338)
115 1zp6_A Hypothetical protein AT 96.5 0.0015 5.1E-08 54.2 3.3 24 130-153 9-32 (191)
116 1fx0_B ATP synthase beta chain 96.5 0.0095 3.3E-07 56.6 9.0 89 130-220 165-275 (498)
117 3uie_A Adenylyl-sulfate kinase 96.5 0.0017 5.7E-08 54.6 3.5 28 126-153 21-48 (200)
118 1kag_A SKI, shikimate kinase I 96.4 0.0014 4.7E-08 53.5 2.8 23 131-153 5-27 (173)
119 3vaa_A Shikimate kinase, SK; s 96.4 0.0016 5.4E-08 54.7 3.2 24 130-153 25-48 (199)
120 2b8t_A Thymidine kinase; deoxy 96.4 0.00078 2.7E-08 57.7 1.3 85 130-220 12-98 (223)
121 4eun_A Thermoresistant glucoki 96.4 0.0018 6E-08 54.4 3.4 26 128-153 27-52 (200)
122 3trf_A Shikimate kinase, SK; a 96.4 0.0017 5.8E-08 53.6 3.3 24 130-153 5-28 (185)
123 1kgd_A CASK, peripheral plasma 96.4 0.0017 6E-08 53.5 3.2 23 131-153 6-28 (180)
124 2ck3_D ATP synthase subunit be 96.4 0.02 6.7E-07 54.3 10.6 89 130-220 153-262 (482)
125 1pzn_A RAD51, DNA repair and r 96.4 0.016 5.6E-07 53.0 9.9 90 130-220 131-240 (349)
126 2r44_A Uncharacterized protein 96.4 0.0016 5.5E-08 59.2 3.1 43 107-153 27-69 (331)
127 2hf9_A Probable hydrogenase ni 96.3 0.0032 1.1E-07 53.6 4.5 36 118-153 26-61 (226)
128 3cmu_A Protein RECA, recombina 96.3 0.0084 2.9E-07 66.2 8.7 84 129-220 1426-1514(2050)
129 1iy2_A ATP-dependent metallopr 96.3 0.0052 1.8E-07 54.3 6.0 48 106-153 39-96 (278)
130 3t61_A Gluconokinase; PSI-biol 96.3 0.0018 6.2E-08 54.3 2.9 24 130-153 18-41 (202)
131 1ex7_A Guanylate kinase; subst 96.3 0.0019 6.7E-08 53.6 2.9 23 131-153 2-24 (186)
132 3tau_A Guanylate kinase, GMP k 96.3 0.0028 9.5E-08 53.6 3.8 25 129-153 7-31 (208)
133 1nks_A Adenylate kinase; therm 96.3 0.0022 7.6E-08 53.0 3.2 24 131-154 2-25 (194)
134 2rhm_A Putative kinase; P-loop 96.3 0.0024 8.3E-08 52.9 3.4 24 130-153 5-28 (193)
135 3e70_C DPA, signal recognition 96.3 0.042 1.4E-06 49.8 11.9 58 128-188 127-185 (328)
136 2ffh_A Protein (FFH); SRP54, s 96.3 0.015 5.2E-07 54.6 9.1 25 130-154 98-122 (425)
137 2wsm_A Hydrogenase expression/ 96.2 0.0028 9.6E-08 53.8 3.8 37 117-153 17-53 (221)
138 1odf_A YGR205W, hypothetical 3 96.2 0.0049 1.7E-07 55.0 5.5 27 128-154 29-55 (290)
139 1qvr_A CLPB protein; coiled co 96.2 0.0038 1.3E-07 64.4 5.4 44 108-153 559-611 (854)
140 1uf9_A TT1252 protein; P-loop, 96.2 0.0027 9.3E-08 53.0 3.6 26 128-153 6-31 (203)
141 3iij_A Coilin-interacting nucl 96.2 0.0023 7.8E-08 52.6 3.0 24 130-153 11-34 (180)
142 1kht_A Adenylate kinase; phosp 96.2 0.0025 8.5E-08 52.7 3.2 23 131-153 4-26 (192)
143 3nbx_X ATPase RAVA; AAA+ ATPas 96.2 0.0028 9.5E-08 61.1 3.9 43 107-153 22-64 (500)
144 2yvu_A Probable adenylyl-sulfa 96.2 0.0029 9.9E-08 52.3 3.6 26 129-154 12-37 (186)
145 3hws_A ATP-dependent CLP prote 96.2 0.0041 1.4E-07 57.3 4.9 44 108-153 16-74 (363)
146 1y63_A LMAJ004144AAA protein; 96.2 0.0033 1.1E-07 52.0 3.8 25 129-153 9-33 (184)
147 1knq_A Gluconate kinase; ALFA/ 96.2 0.0027 9.1E-08 51.9 3.2 24 130-153 8-31 (175)
148 3tr0_A Guanylate kinase, GMP k 96.2 0.0027 9.3E-08 53.2 3.3 23 131-153 8-30 (205)
149 2qor_A Guanylate kinase; phosp 96.1 0.0026 8.8E-08 53.5 3.0 24 130-153 12-35 (204)
150 1tev_A UMP-CMP kinase; ploop, 96.1 0.0029 1E-07 52.3 3.3 24 130-153 3-26 (196)
151 1via_A Shikimate kinase; struc 96.1 0.0026 8.7E-08 52.1 2.8 23 131-153 5-27 (175)
152 3asz_A Uridine kinase; cytidin 96.1 0.0031 1E-07 53.2 3.4 25 129-153 5-29 (211)
153 3a00_A Guanylate kinase, GMP k 96.1 0.0026 9E-08 52.7 2.9 23 131-153 2-24 (186)
154 1j8m_F SRP54, signal recogniti 96.1 0.019 6.5E-07 51.3 8.7 88 130-220 98-189 (297)
155 3cf2_A TER ATPase, transitiona 96.1 0.029 9.9E-07 56.9 10.9 24 130-153 511-534 (806)
156 2iyv_A Shikimate kinase, SK; t 96.1 0.0025 8.4E-08 52.5 2.7 23 131-153 3-25 (184)
157 1zuh_A Shikimate kinase; alpha 96.1 0.0031 1.1E-07 51.1 3.2 24 130-153 7-30 (168)
158 2c95_A Adenylate kinase 1; tra 96.1 0.0032 1.1E-07 52.2 3.4 24 130-153 9-32 (196)
159 2bdt_A BH3686; alpha-beta prot 96.1 0.0031 1.1E-07 52.2 3.2 23 131-153 3-25 (189)
160 2jaq_A Deoxyguanosine kinase; 96.1 0.0031 1E-07 52.7 3.2 22 132-153 2-23 (205)
161 2ga8_A Hypothetical 39.9 kDa p 96.1 0.0053 1.8E-07 56.1 4.9 37 117-153 7-47 (359)
162 1gvn_B Zeta; postsegregational 96.1 0.0054 1.8E-07 54.7 4.9 25 129-153 32-56 (287)
163 2j41_A Guanylate kinase; GMP, 96.1 0.0032 1.1E-07 52.8 3.3 24 130-153 6-29 (207)
164 1um8_A ATP-dependent CLP prote 96.1 0.0054 1.8E-07 56.8 5.1 24 130-153 72-95 (376)
165 1ukz_A Uridylate kinase; trans 96.1 0.0038 1.3E-07 52.3 3.7 25 129-153 14-38 (203)
166 2j37_W Signal recognition part 96.1 0.046 1.6E-06 52.5 11.6 25 129-153 100-124 (504)
167 2ze6_A Isopentenyl transferase 96.1 0.0031 1.1E-07 55.1 3.2 23 131-153 2-24 (253)
168 2if2_A Dephospho-COA kinase; a 96.1 0.0033 1.1E-07 52.7 3.2 22 131-152 2-23 (204)
169 2dhr_A FTSH; AAA+ protein, hex 96.0 0.0065 2.2E-07 58.4 5.6 48 106-153 30-87 (499)
170 4gp7_A Metallophosphoesterase; 96.0 0.003 1E-07 51.6 2.8 23 130-152 9-31 (171)
171 1cke_A CK, MSSA, protein (cyti 96.0 0.0034 1.1E-07 53.6 3.2 23 131-153 6-28 (227)
172 2bwj_A Adenylate kinase 5; pho 96.0 0.0036 1.2E-07 52.1 3.3 24 130-153 12-35 (199)
173 2qt1_A Nicotinamide riboside k 96.0 0.0041 1.4E-07 52.3 3.6 24 130-153 21-44 (207)
174 1e6c_A Shikimate kinase; phosp 96.0 0.0031 1.1E-07 51.2 2.8 23 131-153 3-25 (173)
175 1jjv_A Dephospho-COA kinase; P 96.0 0.0037 1.3E-07 52.5 3.3 22 131-152 3-24 (206)
176 1qf9_A UMP/CMP kinase, protein 96.0 0.0043 1.5E-07 51.2 3.6 24 130-153 6-29 (194)
177 1ye8_A Protein THEP1, hypothet 96.0 0.004 1.4E-07 51.3 3.3 22 132-153 2-23 (178)
178 3cm0_A Adenylate kinase; ATP-b 96.0 0.0039 1.3E-07 51.4 3.2 23 131-153 5-27 (186)
179 2cdn_A Adenylate kinase; phosp 96.0 0.0048 1.6E-07 51.6 3.8 24 130-153 20-43 (201)
180 2vli_A Antibiotic resistance p 96.0 0.0028 9.7E-08 52.0 2.3 24 130-153 5-28 (183)
181 1q57_A DNA primase/helicase; d 96.0 0.033 1.1E-06 53.7 10.2 51 130-184 242-292 (503)
182 1ls1_A Signal recognition part 95.9 0.021 7.3E-07 51.0 8.2 87 130-220 98-189 (295)
183 2plr_A DTMP kinase, probable t 95.9 0.0042 1.4E-07 52.2 3.4 23 131-153 5-27 (213)
184 3a4m_A L-seryl-tRNA(SEC) kinas 95.9 0.0041 1.4E-07 54.5 3.4 24 130-153 4-27 (260)
185 1lvg_A Guanylate kinase, GMP k 95.9 0.0035 1.2E-07 52.5 2.8 23 131-153 5-27 (198)
186 2bbw_A Adenylate kinase 4, AK4 95.9 0.0044 1.5E-07 53.8 3.5 25 129-153 26-50 (246)
187 3umf_A Adenylate kinase; rossm 95.9 0.0041 1.4E-07 53.0 3.1 25 129-153 28-52 (217)
188 2pt5_A Shikimate kinase, SK; a 95.9 0.0045 1.5E-07 50.0 3.2 22 132-153 2-23 (168)
189 2pbr_A DTMP kinase, thymidylat 95.9 0.0047 1.6E-07 51.1 3.3 22 132-153 2-23 (195)
190 1g5t_A COB(I)alamin adenosyltr 95.8 0.0055 1.9E-07 51.1 3.6 87 131-220 29-129 (196)
191 2p5t_B PEZT; postsegregational 95.8 0.0059 2E-07 53.2 4.0 25 129-153 31-55 (253)
192 2wwf_A Thymidilate kinase, put 95.8 0.005 1.7E-07 51.8 3.4 25 130-154 10-34 (212)
193 3zvl_A Bifunctional polynucleo 95.8 0.032 1.1E-06 52.4 9.2 26 128-153 256-281 (416)
194 1aky_A Adenylate kinase; ATP:A 95.8 0.0051 1.7E-07 52.3 3.4 24 130-153 4-27 (220)
195 1nn5_A Similar to deoxythymidy 95.8 0.0052 1.8E-07 51.8 3.4 25 130-154 9-33 (215)
196 1xjc_A MOBB protein homolog; s 95.8 0.0054 1.8E-07 50.0 3.3 26 129-154 3-28 (169)
197 1uj2_A Uridine-cytidine kinase 95.8 0.0051 1.8E-07 53.6 3.4 26 128-153 20-45 (252)
198 3fwy_A Light-independent proto 95.8 0.0052 1.8E-07 55.5 3.5 40 128-170 46-85 (314)
199 3ney_A 55 kDa erythrocyte memb 95.8 0.0056 1.9E-07 51.3 3.4 25 129-153 18-42 (197)
200 1znw_A Guanylate kinase, GMP k 95.8 0.0053 1.8E-07 51.7 3.3 24 130-153 20-43 (207)
201 2grj_A Dephospho-COA kinase; T 95.8 0.0053 1.8E-07 51.3 3.2 25 129-153 11-35 (192)
202 2v54_A DTMP kinase, thymidylat 95.8 0.0059 2E-07 51.0 3.5 24 130-153 4-27 (204)
203 1jr3_D DNA polymerase III, del 95.7 0.1 3.5E-06 47.4 12.1 133 128-286 16-183 (343)
204 3cmu_A Protein RECA, recombina 95.7 0.021 7.3E-07 63.1 8.5 83 130-220 383-470 (2050)
205 1zd8_A GTP:AMP phosphotransfer 95.7 0.0056 1.9E-07 52.4 3.3 24 130-153 7-30 (227)
206 3upu_A ATP-dependent DNA helic 95.7 0.014 4.8E-07 55.6 6.3 39 115-154 31-69 (459)
207 3fb4_A Adenylate kinase; psych 95.7 0.005 1.7E-07 52.1 2.9 22 132-153 2-23 (216)
208 3l0o_A Transcription terminati 95.7 0.0017 5.7E-08 59.9 -0.2 52 120-172 164-216 (427)
209 2z0h_A DTMP kinase, thymidylat 95.7 0.0059 2E-07 50.6 3.2 23 132-154 2-24 (197)
210 3cmw_A Protein RECA, recombina 95.7 0.018 6.2E-07 62.8 7.6 83 130-220 383-470 (1706)
211 1z6g_A Guanylate kinase; struc 95.7 0.0053 1.8E-07 52.3 2.9 24 130-153 23-46 (218)
212 3aez_A Pantothenate kinase; tr 95.7 0.0065 2.2E-07 54.8 3.6 26 128-153 88-113 (312)
213 3tqc_A Pantothenate kinase; bi 95.7 0.0087 3E-07 54.1 4.4 25 129-153 91-115 (321)
214 2jeo_A Uridine-cytidine kinase 95.6 0.0068 2.3E-07 52.5 3.5 25 129-153 24-48 (245)
215 1zak_A Adenylate kinase; ATP:A 95.6 0.006 2.1E-07 51.9 3.1 24 130-153 5-28 (222)
216 2zts_A Putative uncharacterize 95.6 0.019 6.5E-07 49.4 6.4 49 130-182 30-78 (251)
217 3dl0_A Adenylate kinase; phosp 95.6 0.0056 1.9E-07 51.8 2.9 22 132-153 2-23 (216)
218 1rj9_A FTSY, signal recognitio 95.6 0.0077 2.6E-07 54.1 3.8 25 129-153 101-125 (304)
219 4e22_A Cytidylate kinase; P-lo 95.6 0.0066 2.3E-07 52.9 3.3 24 130-153 27-50 (252)
220 1tue_A Replication protein E1; 95.6 0.008 2.7E-07 50.5 3.6 37 117-153 44-81 (212)
221 1g41_A Heat shock protein HSLU 95.6 0.0063 2.1E-07 57.5 3.2 45 107-153 15-73 (444)
222 2qe7_A ATP synthase subunit al 95.6 0.021 7.2E-07 54.3 6.8 86 130-220 162-263 (502)
223 2r9v_A ATP synthase subunit al 95.6 0.023 7.7E-07 54.2 7.0 85 131-220 176-276 (515)
224 2f6r_A COA synthase, bifunctio 95.5 0.0085 2.9E-07 53.2 3.8 24 129-152 74-97 (281)
225 1s96_A Guanylate kinase, GMP k 95.5 0.0074 2.5E-07 51.5 3.3 24 130-153 16-39 (219)
226 2pez_A Bifunctional 3'-phospho 95.5 0.0075 2.6E-07 49.4 3.2 24 130-153 5-28 (179)
227 3tlx_A Adenylate kinase 2; str 95.5 0.0077 2.6E-07 52.2 3.4 25 129-153 28-52 (243)
228 1htw_A HI0065; nucleotide-bind 95.5 0.0082 2.8E-07 48.4 3.3 25 129-153 32-56 (158)
229 1gtv_A TMK, thymidylate kinase 95.5 0.0037 1.3E-07 52.7 1.3 24 131-154 1-24 (214)
230 1vht_A Dephospho-COA kinase; s 95.5 0.0082 2.8E-07 50.9 3.4 23 130-152 4-26 (218)
231 2ehv_A Hypothetical protein PH 95.4 0.008 2.7E-07 51.8 3.3 24 130-153 30-53 (251)
232 1m7g_A Adenylylsulfate kinase; 95.4 0.011 3.6E-07 50.0 3.9 26 128-153 23-48 (211)
233 1a7j_A Phosphoribulokinase; tr 95.4 0.0049 1.7E-07 55.0 1.8 25 129-153 4-28 (290)
234 3p32_A Probable GTPase RV1496/ 95.4 0.017 5.9E-07 53.0 5.6 36 118-153 65-102 (355)
235 3vr4_D V-type sodium ATPase su 95.4 0.028 9.7E-07 52.9 7.0 89 131-220 152-257 (465)
236 3cmw_A Protein RECA, recombina 95.4 0.027 9.1E-07 61.5 7.6 83 130-220 1431-1518(1706)
237 3nwj_A ATSK2; P loop, shikimat 95.4 0.0076 2.6E-07 52.5 2.8 23 131-153 49-71 (250)
238 3lnc_A Guanylate kinase, GMP k 95.4 0.006 2E-07 52.3 2.1 24 130-153 27-51 (231)
239 3ake_A Cytidylate kinase; CMP 95.4 0.009 3.1E-07 50.0 3.2 23 131-153 3-25 (208)
240 3a8t_A Adenylate isopentenyltr 95.3 0.011 3.7E-07 53.7 3.6 25 130-154 40-64 (339)
241 1np6_A Molybdopterin-guanine d 95.3 0.011 3.7E-07 48.5 3.3 24 130-153 6-29 (174)
242 2i3b_A HCR-ntpase, human cance 95.2 0.0089 3E-07 49.7 2.8 23 131-153 2-24 (189)
243 3k1j_A LON protease, ATP-depen 95.2 0.011 3.9E-07 58.3 4.0 43 107-153 41-83 (604)
244 2f1r_A Molybdopterin-guanine d 95.2 0.006 2E-07 49.9 1.6 23 131-153 3-25 (171)
245 1e4v_A Adenylate kinase; trans 95.2 0.01 3.5E-07 50.1 3.2 22 132-153 2-23 (214)
246 3lv8_A DTMP kinase, thymidylat 95.2 0.025 8.7E-07 48.7 5.7 52 130-183 27-78 (236)
247 3be4_A Adenylate kinase; malar 95.2 0.0091 3.1E-07 50.7 2.8 23 131-153 6-28 (217)
248 1sq5_A Pantothenate kinase; P- 95.2 0.011 3.8E-07 53.2 3.5 26 128-153 78-103 (308)
249 2onk_A Molybdate/tungstate ABC 95.2 0.012 4.1E-07 50.9 3.6 25 128-153 23-47 (240)
250 3sr0_A Adenylate kinase; phosp 95.2 0.0096 3.3E-07 50.2 2.9 22 132-153 2-23 (206)
251 3bgw_A DNAB-like replicative h 95.2 0.055 1.9E-06 51.2 8.4 39 130-171 197-235 (444)
252 2xb4_A Adenylate kinase; ATP-b 95.2 0.011 3.8E-07 50.4 3.2 22 132-153 2-23 (223)
253 3exa_A TRNA delta(2)-isopenten 95.1 0.012 4.2E-07 52.7 3.5 25 130-154 3-27 (322)
254 3tif_A Uncharacterized ABC tra 95.1 0.01 3.6E-07 51.1 3.0 24 130-153 31-54 (235)
255 3d3q_A TRNA delta(2)-isopenten 95.1 0.011 3.8E-07 53.7 3.2 23 131-153 8-30 (340)
256 3r20_A Cytidylate kinase; stru 95.1 0.012 4.1E-07 50.6 3.3 24 130-153 9-32 (233)
257 2pcj_A ABC transporter, lipopr 95.1 0.011 3.6E-07 50.7 3.0 23 131-153 31-53 (224)
258 4tmk_A Protein (thymidylate ki 95.1 0.029 9.9E-07 47.5 5.6 52 131-184 4-55 (213)
259 1ak2_A Adenylate kinase isoenz 95.1 0.013 4.5E-07 50.2 3.6 24 130-153 16-39 (233)
260 3b9q_A Chloroplast SRP recepto 95.1 0.013 4.6E-07 52.5 3.6 24 130-153 100-123 (302)
261 1ltq_A Polynucleotide kinase; 95.1 0.012 4E-07 52.6 3.3 23 131-153 3-25 (301)
262 1cr0_A DNA primase/helicase; R 95.1 0.029 1E-06 49.9 5.9 50 130-183 35-84 (296)
263 3b85_A Phosphate starvation-in 95.0 0.01 3.6E-07 50.1 2.6 23 131-153 23-45 (208)
264 3crm_A TRNA delta(2)-isopenten 95.0 0.011 3.7E-07 53.4 2.9 23 131-153 6-28 (323)
265 2ck3_A ATP synthase subunit al 95.0 0.037 1.3E-06 52.8 6.6 89 131-220 163-271 (510)
266 1oix_A RAS-related protein RAB 95.0 0.014 4.9E-07 48.2 3.3 24 130-153 29-52 (191)
267 2dyk_A GTP-binding protein; GT 95.0 0.015 5.3E-07 46.0 3.4 23 131-153 2-24 (161)
268 2wji_A Ferrous iron transport 95.0 0.016 5.4E-07 46.6 3.4 23 131-153 4-26 (165)
269 2cbz_A Multidrug resistance-as 94.9 0.013 4.4E-07 50.6 3.0 24 130-153 31-54 (237)
270 3gqb_B V-type ATP synthase bet 94.9 0.023 7.7E-07 53.5 4.8 89 131-220 148-260 (464)
271 1fx0_A ATP synthase alpha chai 94.9 0.029 1E-06 53.5 5.6 85 131-220 164-264 (507)
272 1yrb_A ATP(GTP)binding protein 94.9 0.015 5.3E-07 50.5 3.5 24 130-153 14-37 (262)
273 1b0u_A Histidine permease; ABC 94.9 0.013 4.5E-07 51.4 2.9 24 130-153 32-55 (262)
274 2qmh_A HPR kinase/phosphorylas 94.9 0.015 5.2E-07 48.5 3.1 23 131-153 35-57 (205)
275 3gfo_A Cobalt import ATP-bindi 94.9 0.013 4.5E-07 51.7 2.9 23 131-153 35-57 (275)
276 4eaq_A DTMP kinase, thymidylat 94.9 0.026 8.8E-07 48.4 4.7 25 130-154 26-50 (229)
277 2zej_A Dardarin, leucine-rich 94.9 0.013 4.4E-07 48.1 2.7 22 132-153 4-25 (184)
278 3ld9_A DTMP kinase, thymidylat 94.9 0.03 1E-06 47.8 5.1 57 127-184 18-74 (223)
279 2c61_A A-type ATP synthase non 94.8 0.026 8.9E-07 53.4 5.0 89 131-220 153-258 (469)
280 2d2e_A SUFC protein; ABC-ATPas 94.8 0.016 5.5E-07 50.5 3.3 23 131-153 30-52 (250)
281 1fzq_A ADP-ribosylation factor 94.8 0.022 7.4E-07 46.6 3.9 26 128-153 14-39 (181)
282 1ji0_A ABC transporter; ATP bi 94.8 0.014 5E-07 50.4 3.0 23 131-153 33-55 (240)
283 1g6h_A High-affinity branched- 94.8 0.014 4.9E-07 51.0 3.0 23 131-153 34-56 (257)
284 4g1u_C Hemin import ATP-bindin 94.8 0.015 5E-07 51.2 3.0 24 130-153 37-60 (266)
285 3foz_A TRNA delta(2)-isopenten 94.8 0.016 5.6E-07 51.8 3.3 25 129-153 9-33 (316)
286 1nlf_A Regulatory protein REPA 94.8 0.016 5.6E-07 51.1 3.3 23 131-153 31-53 (279)
287 4akg_A Glutathione S-transfera 94.8 0.12 4E-06 59.2 10.7 51 131-186 1268-1318(2695)
288 2og2_A Putative signal recogni 94.8 0.018 6E-07 53.0 3.6 24 130-153 157-180 (359)
289 1sgw_A Putative ABC transporte 94.8 0.013 4.5E-07 49.7 2.6 23 131-153 36-58 (214)
290 3f9v_A Minichromosome maintena 94.7 0.01 3.5E-07 58.5 2.1 45 107-153 295-350 (595)
291 2pze_A Cystic fibrosis transme 94.7 0.015 5.3E-07 49.8 3.0 23 131-153 35-57 (229)
292 2olj_A Amino acid ABC transpor 94.7 0.015 5.2E-07 51.0 3.0 24 130-153 50-73 (263)
293 3oaa_A ATP synthase subunit al 94.7 0.13 4.5E-06 48.9 9.5 85 131-220 163-263 (513)
294 1u0j_A DNA replication protein 94.7 0.044 1.5E-06 48.0 5.9 37 117-153 89-127 (267)
295 2ff7_A Alpha-hemolysin translo 94.7 0.016 5.3E-07 50.4 3.0 23 131-153 36-58 (247)
296 1zj6_A ADP-ribosylation factor 94.7 0.036 1.2E-06 45.3 5.1 35 118-153 5-39 (187)
297 2zu0_C Probable ATP-dependent 94.7 0.017 5.8E-07 50.8 3.3 24 130-153 46-69 (267)
298 2ce2_X GTPase HRAS; signaling 94.7 0.017 6E-07 45.7 3.1 22 132-153 5-26 (166)
299 2eyu_A Twitching motility prot 94.7 0.025 8.7E-07 49.5 4.3 25 129-153 24-48 (261)
300 2ged_A SR-beta, signal recogni 94.7 0.039 1.3E-06 45.3 5.3 25 129-153 47-71 (193)
301 3end_A Light-independent proto 94.7 0.018 6.2E-07 51.5 3.5 41 127-170 38-78 (307)
302 1moz_A ARL1, ADP-ribosylation 94.7 0.021 7.2E-07 46.4 3.6 35 119-153 6-41 (183)
303 1mv5_A LMRA, multidrug resista 94.7 0.016 5.4E-07 50.2 2.9 24 130-153 28-51 (243)
304 2f9l_A RAB11B, member RAS onco 94.7 0.02 6.7E-07 47.6 3.4 24 130-153 5-28 (199)
305 1zu4_A FTSY; GTPase, signal re 94.7 0.02 6.9E-07 51.7 3.7 26 129-154 104-129 (320)
306 3mfy_A V-type ATP synthase alp 94.7 0.074 2.5E-06 51.2 7.6 48 130-182 227-275 (588)
307 3io3_A DEHA2D07832P; chaperone 94.6 0.039 1.3E-06 50.5 5.6 30 125-154 13-42 (348)
308 1vpl_A ABC transporter, ATP-bi 94.6 0.017 5.7E-07 50.5 2.9 24 130-153 41-64 (256)
309 2ghi_A Transport protein; mult 94.6 0.017 5.9E-07 50.6 3.0 24 130-153 46-69 (260)
310 2wjg_A FEOB, ferrous iron tran 94.6 0.022 7.6E-07 46.5 3.6 23 131-153 8-30 (188)
311 2ixe_A Antigen peptide transpo 94.6 0.017 5.9E-07 50.9 3.0 24 130-153 45-68 (271)
312 2lkc_A Translation initiation 94.6 0.027 9.1E-07 45.5 4.0 25 129-153 7-31 (178)
313 2v9p_A Replication protein E1; 94.6 0.019 6.5E-07 51.5 3.3 25 129-153 125-149 (305)
314 1z2a_A RAS-related protein RAB 94.6 0.02 6.8E-07 45.7 3.1 24 130-153 5-28 (168)
315 1q3t_A Cytidylate kinase; nucl 94.6 0.022 7.6E-07 48.9 3.6 25 129-153 15-39 (236)
316 2qi9_C Vitamin B12 import ATP- 94.6 0.018 6.2E-07 50.1 3.0 23 131-153 27-49 (249)
317 2r8r_A Sensor protein; KDPD, P 94.5 0.025 8.7E-07 48.2 3.7 38 131-171 7-44 (228)
318 1svi_A GTP-binding protein YSX 94.5 0.026 8.8E-07 46.4 3.8 25 129-153 22-46 (195)
319 2yz2_A Putative ABC transporte 94.5 0.019 6.3E-07 50.5 3.0 24 130-153 33-56 (266)
320 3iqw_A Tail-anchored protein t 94.5 0.045 1.5E-06 49.8 5.6 30 125-154 11-40 (334)
321 4edh_A DTMP kinase, thymidylat 94.5 0.057 2E-06 45.7 5.9 24 131-154 7-30 (213)
322 2nq2_C Hypothetical ABC transp 94.5 0.019 6.4E-07 50.1 2.9 23 131-153 32-54 (253)
323 2ihy_A ABC transporter, ATP-bi 94.5 0.019 6.5E-07 50.8 2.9 24 130-153 47-70 (279)
324 1nrj_B SR-beta, signal recogni 94.4 0.027 9.1E-07 47.4 3.7 26 128-153 10-35 (218)
325 3con_A GTPase NRAS; structural 94.4 0.022 7.6E-07 46.6 3.1 23 131-153 22-44 (190)
326 2www_A Methylmalonic aciduria 94.4 0.044 1.5E-06 50.1 5.4 25 129-153 73-97 (349)
327 1u8z_A RAS-related protein RAL 94.4 0.023 7.9E-07 45.1 3.1 23 131-153 5-27 (168)
328 3geh_A MNME, tRNA modification 94.4 0.13 4.6E-06 48.8 8.8 22 132-153 226-247 (462)
329 2nzj_A GTP-binding protein REM 94.4 0.029 9.9E-07 45.0 3.7 24 130-153 4-27 (175)
330 3sop_A Neuronal-specific septi 94.4 0.022 7.6E-07 50.2 3.1 22 132-153 4-25 (270)
331 2yhs_A FTSY, cell division pro 94.4 0.024 8.3E-07 54.1 3.6 25 129-153 292-316 (503)
332 1f6b_A SAR1; gtpases, N-termin 94.4 0.031 1.1E-06 46.4 3.9 25 129-153 24-48 (198)
333 2ocp_A DGK, deoxyguanosine kin 94.4 0.024 8.3E-07 48.8 3.4 25 130-154 2-26 (241)
334 3hjn_A DTMP kinase, thymidylat 94.3 0.072 2.5E-06 44.4 6.1 50 132-184 2-51 (197)
335 2gj8_A MNME, tRNA modification 94.3 0.025 8.5E-07 45.8 3.2 23 131-153 5-27 (172)
336 1svm_A Large T antigen; AAA+ f 94.3 0.025 8.6E-07 52.3 3.6 26 128-153 167-192 (377)
337 2erx_A GTP-binding protein DI- 94.3 0.026 9E-07 45.0 3.2 23 131-153 4-26 (172)
338 3vr4_A V-type sodium ATPase ca 94.3 0.093 3.2E-06 50.7 7.3 85 130-220 232-338 (600)
339 1z08_A RAS-related protein RAB 94.2 0.025 8.7E-07 45.1 3.1 24 130-153 6-29 (170)
340 1kao_A RAP2A; GTP-binding prot 94.2 0.026 8.8E-07 44.8 3.1 23 131-153 4-26 (167)
341 3q72_A GTP-binding protein RAD 94.2 0.022 7.4E-07 45.4 2.6 22 132-153 4-25 (166)
342 1c1y_A RAS-related protein RAP 94.2 0.026 8.9E-07 44.9 3.1 22 132-153 5-26 (167)
343 1ek0_A Protein (GTP-binding pr 94.2 0.026 8.9E-07 45.0 3.1 22 132-153 5-26 (170)
344 1z0j_A RAB-22, RAS-related pro 94.2 0.026 9E-07 45.0 3.1 23 131-153 7-29 (170)
345 1m7b_A RND3/RHOE small GTP-bin 94.2 0.026 8.9E-07 46.1 3.1 24 130-153 7-30 (184)
346 2vp4_A Deoxynucleoside kinase; 94.2 0.021 7.3E-07 48.8 2.6 24 130-153 20-43 (230)
347 3pqc_A Probable GTP-binding pr 94.2 0.035 1.2E-06 45.4 3.8 24 130-153 23-46 (195)
348 1ky3_A GTP-binding protein YPT 94.2 0.027 9.3E-07 45.5 3.1 25 129-153 7-31 (182)
349 1nij_A Hypothetical protein YJ 94.1 0.024 8.3E-07 51.2 3.0 25 129-153 3-27 (318)
350 3q85_A GTP-binding protein REM 94.1 0.033 1.1E-06 44.4 3.5 23 131-153 3-25 (169)
351 2pjz_A Hypothetical protein ST 94.1 0.025 8.6E-07 49.6 2.9 23 131-153 31-53 (263)
352 2v3c_C SRP54, signal recogniti 94.1 0.02 6.9E-07 54.0 2.5 24 130-153 99-122 (432)
353 3ihw_A Centg3; RAS, centaurin, 94.1 0.028 9.6E-07 46.1 3.1 23 131-153 21-43 (184)
354 2fn4_A P23, RAS-related protei 94.1 0.028 9.7E-07 45.3 3.1 24 130-153 9-32 (181)
355 1wms_A RAB-9, RAB9, RAS-relate 94.1 0.029 9.9E-07 45.2 3.1 24 130-153 7-30 (177)
356 3fvq_A Fe(3+) IONS import ATP- 94.1 0.028 9.6E-07 51.5 3.3 24 130-153 30-53 (359)
357 1g16_A RAS-related protein SEC 94.1 0.029 1E-06 44.7 3.1 23 131-153 4-26 (170)
358 2cxx_A Probable GTP-binding pr 94.0 0.029 9.8E-07 45.8 3.1 22 132-153 3-24 (190)
359 2b6h_A ADP-ribosylation factor 94.0 0.026 8.7E-07 46.6 2.7 26 128-153 27-52 (192)
360 2hxs_A RAB-26, RAS-related pro 94.0 0.031 1.1E-06 45.1 3.1 24 130-153 6-29 (178)
361 2orw_A Thymidine kinase; TMTK, 94.0 0.028 9.7E-07 46.4 2.9 23 131-153 4-26 (184)
362 3c5c_A RAS-like protein 12; GD 94.0 0.03 1E-06 45.9 3.1 24 130-153 21-44 (187)
363 3kta_A Chromosome segregation 94.0 0.035 1.2E-06 45.3 3.4 23 131-153 27-49 (182)
364 4gzl_A RAS-related C3 botulinu 94.0 0.034 1.1E-06 46.4 3.4 27 127-153 27-53 (204)
365 1r2q_A RAS-related protein RAB 94.0 0.032 1.1E-06 44.5 3.1 23 131-153 7-29 (170)
366 3eph_A TRNA isopentenyltransfe 94.0 0.028 9.7E-07 52.2 3.1 23 131-153 3-25 (409)
367 1r8s_A ADP-ribosylation factor 94.0 0.031 1.1E-06 44.4 3.0 22 132-153 2-23 (164)
368 1p5z_B DCK, deoxycytidine kina 93.9 0.02 6.7E-07 50.1 1.9 25 129-153 23-47 (263)
369 2h92_A Cytidylate kinase; ross 93.9 0.028 9.7E-07 47.4 2.9 23 131-153 4-26 (219)
370 1m2o_B GTP-binding protein SAR 93.9 0.032 1.1E-06 46.0 3.1 24 130-153 23-46 (190)
371 1z0f_A RAB14, member RAS oncog 93.9 0.033 1.1E-06 44.8 3.1 24 130-153 15-38 (179)
372 2bbs_A Cystic fibrosis transme 93.9 0.03 1E-06 49.9 3.0 24 130-153 64-87 (290)
373 3nh6_A ATP-binding cassette SU 93.9 0.021 7.4E-07 51.2 2.1 24 130-153 80-103 (306)
374 1upt_A ARL1, ADP-ribosylation 93.9 0.034 1.2E-06 44.4 3.1 24 130-153 7-30 (171)
375 3tw8_B RAS-related protein RAB 93.9 0.028 9.5E-07 45.4 2.6 25 129-153 8-32 (181)
376 2axn_A 6-phosphofructo-2-kinas 93.9 0.033 1.1E-06 53.9 3.5 25 129-153 34-58 (520)
377 4dsu_A GTPase KRAS, isoform 2B 93.9 0.033 1.1E-06 45.3 3.1 23 131-153 5-27 (189)
378 1ksh_A ARF-like protein 2; sma 93.9 0.036 1.2E-06 45.2 3.3 26 128-153 16-41 (186)
379 3kkq_A RAS-related protein M-R 93.8 0.034 1.2E-06 45.1 3.1 24 130-153 18-41 (183)
380 2bme_A RAB4A, RAS-related prot 93.8 0.034 1.2E-06 45.2 3.1 24 130-153 10-33 (186)
381 3tui_C Methionine import ATP-b 93.8 0.033 1.1E-06 51.1 3.3 24 130-153 54-77 (366)
382 1z47_A CYSA, putative ABC-tran 93.8 0.034 1.1E-06 51.0 3.3 23 131-153 42-64 (355)
383 2y8e_A RAB-protein 6, GH09086P 93.8 0.035 1.2E-06 44.7 3.1 23 131-153 15-37 (179)
384 3jvv_A Twitching mobility prot 93.8 0.039 1.3E-06 50.6 3.7 23 131-153 124-146 (356)
385 1cp2_A CP2, nitrogenase iron p 93.8 0.035 1.2E-06 48.5 3.3 37 131-170 2-38 (269)
386 1mh1_A RAC1; GTP-binding, GTPa 93.8 0.036 1.2E-06 45.0 3.1 23 131-153 6-28 (186)
387 3bc1_A RAS-related protein RAB 93.8 0.036 1.2E-06 45.3 3.1 24 130-153 11-34 (195)
388 2iwr_A Centaurin gamma 1; ANK 93.7 0.026 8.8E-07 45.6 2.2 23 131-153 8-30 (178)
389 1g8f_A Sulfate adenylyltransfe 93.7 0.046 1.6E-06 52.6 4.2 26 129-154 394-419 (511)
390 2a9k_A RAS-related protein RAL 93.7 0.037 1.3E-06 44.9 3.1 24 130-153 18-41 (187)
391 1p9r_A General secretion pathw 93.7 0.069 2.4E-06 50.1 5.3 27 127-153 164-190 (418)
392 2yv5_A YJEQ protein; hydrolase 93.7 0.063 2.1E-06 48.0 4.9 32 118-153 156-187 (302)
393 2oil_A CATX-8, RAS-related pro 93.7 0.037 1.3E-06 45.4 3.1 24 130-153 25-48 (193)
394 3bwd_D RAC-like GTP-binding pr 93.7 0.038 1.3E-06 44.7 3.1 24 130-153 8-31 (182)
395 2yyz_A Sugar ABC transporter, 93.7 0.036 1.2E-06 50.8 3.3 24 130-153 29-52 (359)
396 3rlf_A Maltose/maltodextrin im 93.7 0.036 1.2E-06 51.2 3.3 24 130-153 29-52 (381)
397 3t1o_A Gliding protein MGLA; G 93.7 0.037 1.3E-06 45.3 3.1 24 130-153 14-37 (198)
398 3t5g_A GTP-binding protein RHE 93.7 0.036 1.2E-06 44.9 2.9 24 130-153 6-29 (181)
399 2efe_B Small GTP-binding prote 93.7 0.038 1.3E-06 44.7 3.1 23 131-153 13-35 (181)
400 2atv_A RERG, RAS-like estrogen 93.7 0.044 1.5E-06 45.2 3.5 25 129-153 27-51 (196)
401 4b3f_X DNA-binding protein smu 93.6 0.14 4.9E-06 50.8 7.8 63 115-183 192-254 (646)
402 2it1_A 362AA long hypothetical 93.6 0.038 1.3E-06 50.8 3.3 24 130-153 29-52 (362)
403 2bov_A RAla, RAS-related prote 93.6 0.038 1.3E-06 45.7 3.1 24 130-153 14-37 (206)
404 2g6b_A RAS-related protein RAB 93.6 0.04 1.4E-06 44.5 3.1 24 130-153 10-33 (180)
405 1g29_1 MALK, maltose transport 93.6 0.039 1.3E-06 51.0 3.3 23 131-153 30-52 (372)
406 2afh_E Nitrogenase iron protei 93.6 0.041 1.4E-06 48.7 3.4 37 131-170 3-39 (289)
407 1vg8_A RAS-related protein RAB 93.6 0.039 1.3E-06 45.8 3.1 25 129-153 7-31 (207)
408 1lw7_A Transcriptional regulat 93.6 0.036 1.2E-06 51.0 3.0 24 130-153 170-193 (365)
409 2cjw_A GTP-binding protein GEM 93.6 0.04 1.4E-06 45.5 3.1 22 131-152 7-28 (192)
410 1v43_A Sugar-binding transport 93.6 0.039 1.3E-06 50.9 3.3 24 130-153 37-60 (372)
411 3llu_A RAS-related GTP-binding 93.5 0.042 1.4E-06 45.4 3.2 24 130-153 20-43 (196)
412 1pui_A ENGB, probable GTP-bind 93.5 0.021 7.1E-07 47.7 1.3 25 129-153 25-49 (210)
413 1zbd_A Rabphilin-3A; G protein 93.5 0.043 1.5E-06 45.5 3.2 24 130-153 8-31 (203)
414 1gwn_A RHO-related GTP-binding 93.5 0.041 1.4E-06 46.0 3.1 24 130-153 28-51 (205)
415 2ewv_A Twitching motility prot 93.5 0.056 1.9E-06 49.9 4.2 26 128-153 134-159 (372)
416 2h57_A ADP-ribosylation factor 93.5 0.03 1E-06 45.9 2.2 23 131-153 22-44 (190)
417 2fh5_B SR-beta, signal recogni 93.5 0.042 1.4E-06 46.0 3.1 24 130-153 7-30 (214)
418 3cbq_A GTP-binding protein REM 93.5 0.032 1.1E-06 46.2 2.4 24 129-152 22-45 (195)
419 2fg5_A RAB-22B, RAS-related pr 93.5 0.042 1.4E-06 45.2 3.0 24 130-153 23-46 (192)
420 2qm8_A GTPase/ATPase; G protei 93.5 0.053 1.8E-06 49.4 4.0 26 128-153 53-78 (337)
421 2qu8_A Putative nucleolar GTP- 93.5 0.049 1.7E-06 46.3 3.6 25 129-153 28-52 (228)
422 2ew1_A RAS-related protein RAB 93.5 0.042 1.5E-06 45.8 3.1 24 130-153 26-49 (201)
423 3clv_A RAB5 protein, putative; 93.5 0.055 1.9E-06 44.4 3.8 24 130-153 7-30 (208)
424 3oes_A GTPase rhebl1; small GT 93.5 0.043 1.5E-06 45.5 3.1 24 130-153 24-47 (201)
425 1zd9_A ADP-ribosylation factor 93.4 0.044 1.5E-06 44.9 3.1 23 131-153 23-45 (188)
426 2gf9_A RAS-related protein RAB 93.4 0.044 1.5E-06 44.8 3.1 24 130-153 22-45 (189)
427 4hlc_A DTMP kinase, thymidylat 93.4 0.13 4.5E-06 43.1 6.1 49 131-183 3-51 (205)
428 3reg_A RHO-like small GTPase; 93.4 0.045 1.5E-06 45.0 3.1 24 130-153 23-46 (194)
429 3tkl_A RAS-related protein RAB 93.4 0.046 1.6E-06 44.9 3.1 24 130-153 16-39 (196)
430 2a5j_A RAS-related protein RAB 93.4 0.046 1.6E-06 44.9 3.1 23 131-153 22-44 (191)
431 4dkx_A RAS-related protein RAB 93.3 0.046 1.6E-06 46.4 3.1 22 132-153 15-36 (216)
432 3d31_A Sulfate/molybdate ABC t 93.3 0.033 1.1E-06 50.9 2.4 23 131-153 27-49 (348)
433 3v9p_A DTMP kinase, thymidylat 93.3 0.058 2E-06 46.1 3.8 25 130-154 25-49 (227)
434 3kjh_A CO dehydrogenase/acetyl 93.3 0.078 2.7E-06 45.4 4.7 41 133-176 3-43 (254)
435 3gmt_A Adenylate kinase; ssgci 93.3 0.044 1.5E-06 46.9 3.0 23 131-153 9-31 (230)
436 2q3h_A RAS homolog gene family 93.3 0.046 1.6E-06 45.2 3.1 24 130-153 20-43 (201)
437 3tqf_A HPR(Ser) kinase; transf 93.3 0.048 1.6E-06 44.4 3.0 23 131-153 17-39 (181)
438 3fdi_A Uncharacterized protein 93.3 0.043 1.5E-06 46.0 2.9 23 131-153 7-29 (201)
439 2o52_A RAS-related protein RAB 93.3 0.046 1.6E-06 45.3 3.0 25 129-153 24-48 (200)
440 1z06_A RAS-related protein RAB 93.3 0.048 1.6E-06 44.6 3.1 24 130-153 20-43 (189)
441 4bas_A ADP-ribosylation factor 93.3 0.047 1.6E-06 44.9 3.1 24 130-153 17-40 (199)
442 2p5s_A RAS and EF-hand domain 93.3 0.048 1.6E-06 45.1 3.1 25 129-153 27-51 (199)
443 2gza_A Type IV secretion syste 93.2 0.041 1.4E-06 50.6 2.8 23 131-153 176-198 (361)
444 3lxx_A GTPase IMAP family memb 93.2 0.056 1.9E-06 46.3 3.6 25 129-153 28-52 (239)
445 1x3s_A RAS-related protein RAB 93.2 0.049 1.7E-06 44.6 3.1 23 131-153 16-38 (195)
446 3dz8_A RAS-related protein RAB 93.2 0.047 1.6E-06 44.8 3.0 24 130-153 23-46 (191)
447 3dzd_A Transcriptional regulat 93.2 0.094 3.2E-06 48.3 5.2 46 107-153 129-175 (368)
448 2gf0_A GTP-binding protein DI- 93.2 0.05 1.7E-06 44.8 3.1 24 130-153 8-31 (199)
449 2bcg_Y Protein YP2, GTP-bindin 93.2 0.05 1.7E-06 45.2 3.1 24 130-153 8-31 (206)
450 3gd7_A Fusion complex of cysti 93.2 0.049 1.7E-06 50.6 3.3 24 130-153 47-70 (390)
451 1bif_A 6-phosphofructo-2-kinas 93.2 0.049 1.7E-06 52.0 3.4 25 129-153 38-62 (469)
452 2h17_A ADP-ribosylation factor 93.2 0.046 1.6E-06 44.4 2.8 23 131-153 22-44 (181)
453 2qnr_A Septin-2, protein NEDD5 93.2 0.041 1.4E-06 49.3 2.6 21 132-152 20-40 (301)
454 1tq4_A IIGP1, interferon-induc 93.1 0.061 2.1E-06 50.3 3.9 24 130-153 69-92 (413)
455 2p67_A LAO/AO transport system 93.1 0.062 2.1E-06 48.9 3.9 27 127-153 53-79 (341)
456 2g3y_A GTP-binding protein GEM 93.1 0.051 1.7E-06 45.9 3.0 23 130-152 37-59 (211)
457 1c9k_A COBU, adenosylcobinamid 93.1 0.052 1.8E-06 44.6 3.0 22 132-153 1-22 (180)
458 1ega_A Protein (GTP-binding pr 93.1 0.055 1.9E-06 48.4 3.4 25 129-153 7-31 (301)
459 2j1l_A RHO-related GTP-binding 93.1 0.051 1.7E-06 45.7 3.0 24 130-153 34-57 (214)
460 1oxx_K GLCV, glucose, ABC tran 93.0 0.031 1.1E-06 51.2 1.7 24 130-153 31-54 (353)
461 2il1_A RAB12; G-protein, GDP, 93.0 0.045 1.5E-06 45.0 2.5 23 131-153 27-49 (192)
462 1u0l_A Probable GTPase ENGC; p 93.0 0.089 3E-06 47.0 4.7 33 118-153 160-192 (301)
463 2atx_A Small GTP binding prote 93.0 0.055 1.9E-06 44.4 3.1 23 131-153 19-41 (194)
464 2fv8_A H6, RHO-related GTP-bin 93.0 0.054 1.9E-06 45.1 3.1 23 131-153 26-48 (207)
465 3k53_A Ferrous iron transport 93.0 0.061 2.1E-06 47.1 3.5 24 130-153 3-26 (271)
466 2j69_A Bacterial dynamin-like 93.0 0.53 1.8E-05 47.1 10.7 24 130-153 69-92 (695)
467 2j0v_A RAC-like GTP-binding pr 92.9 0.056 1.9E-06 45.1 3.1 24 130-153 9-32 (212)
468 2hup_A RAS-related protein RAB 92.9 0.057 2E-06 44.8 3.1 25 129-153 28-52 (201)
469 2obl_A ESCN; ATPase, hydrolase 92.9 0.056 1.9E-06 49.4 3.2 25 129-153 70-94 (347)
470 3gqb_A V-type ATP synthase alp 92.9 0.087 3E-06 50.7 4.6 48 130-182 221-269 (578)
471 3cr8_A Sulfate adenylyltranfer 92.9 0.04 1.4E-06 53.7 2.3 24 130-153 369-392 (552)
472 3cph_A RAS-related protein SEC 92.9 0.059 2E-06 44.9 3.1 24 130-153 20-43 (213)
473 2gco_A H9, RHO-related GTP-bin 92.8 0.06 2E-06 44.6 3.1 23 131-153 26-48 (201)
474 2pt7_A CAG-ALFA; ATPase, prote 92.8 0.045 1.5E-06 49.7 2.4 23 131-153 172-194 (330)
475 2fu5_C RAS-related protein RAB 92.8 0.036 1.2E-06 45.0 1.6 24 130-153 8-31 (183)
476 3q3j_B RHO-related GTP-binding 92.8 0.062 2.1E-06 45.2 3.1 23 131-153 28-50 (214)
477 1mky_A Probable GTP-binding pr 92.7 0.15 5.2E-06 48.1 6.1 24 130-153 180-203 (439)
478 2f7s_A C25KG, RAS-related prot 92.7 0.065 2.2E-06 44.9 3.2 24 130-153 25-48 (217)
479 1ypw_A Transitional endoplasmi 92.7 0.042 1.4E-06 56.1 2.3 45 107-153 477-534 (806)
480 2rcn_A Probable GTPase ENGC; Y 92.7 0.065 2.2E-06 49.1 3.3 23 131-153 216-238 (358)
481 1m8p_A Sulfate adenylyltransfe 92.7 0.086 2.9E-06 51.6 4.3 26 129-154 395-420 (573)
482 4dzz_A Plasmid partitioning pr 92.6 0.086 2.9E-06 43.7 3.8 43 131-176 2-45 (206)
483 3b1v_A Ferrous iron uptake tra 92.6 0.091 3.1E-06 46.2 4.1 24 130-153 3-26 (272)
484 3iev_A GTP-binding protein ERA 92.6 0.073 2.5E-06 47.7 3.5 25 129-153 9-33 (308)
485 3ch4_B Pmkase, phosphomevalona 92.6 0.09 3.1E-06 43.9 3.8 25 129-153 10-34 (202)
486 4dhe_A Probable GTP-binding pr 92.6 0.046 1.6E-06 46.0 2.0 25 129-153 28-52 (223)
487 2npi_A Protein CLP1; CLP1-PCF1 92.5 0.057 1.9E-06 51.4 2.8 25 129-153 137-161 (460)
488 2aka_B Dynamin-1; fusion prote 92.5 0.15 5.1E-06 45.1 5.4 25 129-153 25-49 (299)
489 3def_A T7I23.11 protein; chlor 92.5 0.12 4.1E-06 45.0 4.7 25 129-153 35-59 (262)
490 1x6v_B Bifunctional 3'-phospho 92.5 0.07 2.4E-06 52.6 3.4 25 129-153 51-75 (630)
491 2xtp_A GTPase IMAP family memb 92.4 0.083 2.8E-06 45.8 3.6 25 129-153 21-45 (260)
492 2qag_B Septin-6, protein NEDD5 92.4 0.063 2.1E-06 50.4 2.9 27 127-153 39-65 (427)
493 3k9g_A PF-32 protein; ssgcid, 92.3 0.071 2.4E-06 46.5 3.0 44 128-175 25-69 (267)
494 2woj_A ATPase GET3; tail-ancho 92.3 0.21 7.2E-06 45.7 6.2 27 128-154 16-42 (354)
495 3fkq_A NTRC-like two-domain pr 92.3 0.097 3.3E-06 48.3 3.9 41 128-171 141-182 (373)
496 2woo_A ATPase GET3; tail-ancho 92.2 0.17 5.7E-06 45.8 5.5 28 127-154 16-43 (329)
497 2x77_A ADP-ribosylation factor 92.2 0.087 3E-06 43.0 3.2 26 128-153 20-45 (189)
498 1wf3_A GTP-binding protein; GT 92.1 0.09 3.1E-06 47.0 3.5 24 130-153 7-30 (301)
499 3iby_A Ferrous iron transport 92.1 0.092 3.1E-06 45.7 3.4 23 131-153 2-24 (256)
500 3cpj_B GTP-binding protein YPT 92.1 0.082 2.8E-06 44.6 3.1 24 130-153 13-36 (223)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=7.2e-40 Score=323.59 Aligned_cols=231 Identities=18% Similarity=0.209 Sum_probs=189.2
Q ss_pred cccchHHHHHHHHHHhcCC---CccEEEEEcCCCCcHHHHHHHHHc--CcccccCCCccEEEEEeCCCc--CHHHHHHHH
Q 038454 110 VGENTKKIVKKVWEDLMGD---KVTKIGVWGMGGFGKTAIMRHINN--RPQEETNEFSDVIWVTVSQPL--DLVKLQAEI 182 (359)
Q Consensus 110 vGr~~~~~~~~l~~~l~~~---~~~vi~I~G~gGiGKTtLa~~v~~--~~~~~~~~F~~~~wv~~~~~~--~~~~~~~~i 182 (359)
|||+. ++++|.++|..+ ..++|+|+||||+||||||+++|+ + ..+..+|++++||++++.+ +...++..|
T Consensus 131 ~GR~~--~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~-~~~~~~F~~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREY--HVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSD-QLIGINYDSIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CCCHH--HHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCS-STBTTTBSEEEEEECCCCSTTHHHHHHHHH
T ss_pred CCchH--HHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhh-HHHhccCCcEEEEEECCCCCCCHHHHHHHH
Confidence 69976 899999998643 689999999999999999999998 4 4578999999999999885 899999999
Q ss_pred HHHhcCCCC-------CCccHHHHHHHHHHHHhcCC-cEEEEEecC----------CCC-eEEEeec------ccc-e-e
Q 038454 183 AMALKLSLT-------EDEDKVSRARRLLGKLKAKK-KFVLILDDI----------DNH-TFCWGLR------SMG-C-E 235 (359)
Q Consensus 183 ~~~l~~~~~-------~~~~~~~~~~~l~~~l~~~k-~~LlVlDdv----------~~g-~ilvTtr------~~~-~-~ 235 (359)
+.+++.... ...+.......+.+.|.+ + |+||||||| .+| +|||||| .++ . .
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~-~kr~LlVLDdv~~~~~~~~~~~~gs~ilvTTR~~~v~~~~~~~~~ 286 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALID-RPNTLFVFDDVVQEETIRWAQELRLRCLVTTRDVEISNAASQTCE 286 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTT-STTEEEEEEEECCHHHHHHHHHTTCEEEEEESBGGGGGGCCSCEE
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcC-CCcEEEEEECCCCchhhcccccCCCEEEEEcCCHHHHHHcCCCCe
Confidence 999986421 123456678889999988 6 999999999 368 9999999 222 2 4
Q ss_pred eeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHHHHhhcCCCChhHHHHHHHHHhhcccccC
Q 038454 236 EVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTVVGCMRGVDEIHEWRNALNELRGLVRSFS 315 (359)
Q Consensus 236 ~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~L~~~~~~~~w~~~l~~~~~~~~~~~ 315 (359)
.|+|++|+.++||+||.+.++... .++.+.+++.+|+++|+|+||||+++|+.|+.+ + |..+ +.+....+..
T Consensus 287 ~~~l~~L~~~ea~~Lf~~~a~~~~--~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~---w~~~-~~l~~~l~~~- 358 (549)
T 2a5y_B 287 FIEVTSLEIDECYDFLEAYGMPMP--VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T---FEKM-AQLNNKLESR- 358 (549)
T ss_dssp EEECCCCCHHHHHHHHHHTSCCCC----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S---HHHH-HHHHHHHHHH-
T ss_pred EEECCCCCHHHHHHHHHHHhcCCC--CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h---HHHH-HHhHHHhhcc-
Confidence 699999999999999999987653 246788899999999999999999999999874 3 4433 3333222222
Q ss_pred CChhhHhhHHHHhhhcCCCcchhHHHh-----------hccccCCCCccC
Q 038454 316 GINADVLGRLEFSYLRLKDKKVQHCFL-----------YCALYPEDFAIS 354 (359)
Q Consensus 316 ~~~~~~~~~l~~sy~~L~~~~~k~cf~-----------~~s~fp~~~~i~ 354 (359)
....+..+|.+||+.| |+++|.||+ |||+||+++.|+
T Consensus 359 -~~~~i~~~l~~Sy~~L-~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~ 406 (549)
T 2a5y_B 359 -GLVGVECITPYSYKSL-AMALQRCVEVLSDEDRSALAFAVVMPPGVDIP 406 (549)
T ss_dssp -CSSTTCCCSSSSSSSH-HHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE
T ss_pred -cHHHHHHHHhcccccc-cHHHHHHHhccchhhhhHhhheeeeCCCCeee
Confidence 2356889999999999 999999999 999999999987
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=8.2e-34 Score=304.73 Aligned_cols=248 Identities=19% Similarity=0.247 Sum_probs=194.8
Q ss_pred ccCCcccccccchHHHHHHHHHHhc--CCCccEEEEEcCCCCcHHHHHHHHHcCcccccCCC-ccEEEEEeCCCc--CHH
Q 038454 102 LILPTTTLVGENTKKIVKKVWEDLM--GDKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEF-SDVIWVTVSQPL--DLV 176 (359)
Q Consensus 102 ~~~~~~~~vGr~~~~~~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F-~~~~wv~~~~~~--~~~ 176 (359)
.|.+++.||||+. ++++|.++|. ++++++|+|+||||+||||||+++|++......+| +.++||+++... +..
T Consensus 119 ~p~~~~~~vgR~~--~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 196 (1249)
T 3sfz_A 119 VPQRPVIFVTRKK--LVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLL 196 (1249)
T ss_dssp CCCCCSSCCCCHH--HHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHH
T ss_pred CCCCCceeccHHH--HHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHH
Confidence 4455678999976 9999999985 45789999999999999999999999832235555 568899998854 345
Q ss_pred HHHHHHHHHhcCCCC----CCccHHHHHHHHHHHHhc-CCcEEEEEecC---------CCC-eEEEeeccc-------c-
Q 038454 177 KLQAEIAMALKLSLT----EDEDKVSRARRLLGKLKA-KKKFVLILDDI---------DNH-TFCWGLRSM-------G- 233 (359)
Q Consensus 177 ~~~~~i~~~l~~~~~----~~~~~~~~~~~l~~~l~~-~k~~LlVlDdv---------~~g-~ilvTtr~~-------~- 233 (359)
..+..++..+..... ...+.+.....+...+.+ ++|+||||||+ .+| +||+|||.. +
T Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~~~~~~ilvTtR~~~~~~~~~~~ 276 (1249)
T 3sfz_A 197 MKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAFDNQCQILLTTRDKSVTDSVMGP 276 (1249)
T ss_dssp HHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTTCSSCEEEEEESSTTTTTTCCSC
T ss_pred HHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhhcCCCEEEEEcCCHHHHHhhcCC
Confidence 557777777765321 234667778888888877 13999999999 678 999999921 2
Q ss_pred eeeeecCC-CChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHHHHhhcCCCChhHHHHHHHHHhhccc
Q 038454 234 CEEVRVPP-LSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTVVGCMRGVDEIHEWRNALNELRGLVR 312 (359)
Q Consensus 234 ~~~~~l~~-L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~L~~~~~~~~w~~~l~~~~~~~~ 312 (359)
...+.+.+ |+.++|++||...++.. .+...+.+++|+++|+|+||||+++|++|+.+. ..|...++.+....+
T Consensus 277 ~~~~~~~~~l~~~~a~~l~~~~~~~~----~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~~~~ 350 (1249)
T 3sfz_A 277 KHVVPVESGLGREKGLEILSLFVNMK----KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQNKQF 350 (1249)
T ss_dssp BCCEECCSSCCHHHHHHHHHHHHTSC----STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHSCCC
T ss_pred ceEEEecCCCCHHHHHHHHHHhhCCC----hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHhhhhh
Confidence 24588886 99999999999988543 234456789999999999999999999998743 479999998875542
Q ss_pred cc-----CCChhhHhhHHHHhhhcCCCcchhHHHhhccccCCCCccCCCCC
Q 038454 313 SF-----SGINADVLGRLEFSYLRLKDKKVQHCFLYCALYPEDFAISKDEL 358 (359)
Q Consensus 313 ~~-----~~~~~~~~~~l~~sy~~L~~~~~k~cf~~~s~fp~~~~i~~~~L 358 (359)
.. ......+..+|.+||+.| |++.|.||+|||+||+++.|+++.|
T Consensus 351 ~~~~~~~~~~~~~~~~~l~~s~~~L-~~~~~~~~~~l~~f~~~~~i~~~~~ 400 (1249)
T 3sfz_A 351 KRIRKSSSYDYEALDEAMSISVEML-REDIKDYYTDLSILQKDVKVPTKVL 400 (1249)
T ss_dssp CCSSCTTCTTHHHHHHHHHHHHHTS-CTTTHHHHHHGGGSCTTCCEEHHHH
T ss_pred hhcccccccchHHHHHHHHHHHHhC-CHHHHHHHHHhCccCCCCeeCHHHH
Confidence 21 122357999999999999 8899999999999999999987654
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=9.5e-34 Score=287.28 Aligned_cols=222 Identities=14% Similarity=0.117 Sum_probs=173.3
Q ss_pred cccccchHHHHHHHHHHhcC-CCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCcc-EEEEEeCCCcCHHHHHHHHHHH
Q 038454 108 TLVGENTKKIVKKVWEDLMG-DKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSD-VIWVTVSQPLDLVKLQAEIAMA 185 (359)
Q Consensus 108 ~~vGr~~~~~~~~l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~-~~wv~~~~~~~~~~~~~~i~~~ 185 (359)
..|||+. ++++|.++|.. ++.++|+|+||||+||||||+++|++ .++..+|+. ++|+++++.++...++..|+..
T Consensus 129 ~~VGRe~--eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d-~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~l 205 (1221)
T 1vt4_I 129 YNVSRLQ--PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS-YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL 205 (1221)
T ss_dssp SCCCCHH--HHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHH-CHHHHHHSSCEEEEECCCSSSHHHHHHHHHHH
T ss_pred CCCCcHH--HHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHh-hHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 4599976 89999998865 56899999999999999999999987 557788986 9999999999988888888776
Q ss_pred hcCCC---CC--------CccHHHHHHHHHHHH---hcCCcEEEEEecC---------CCC-eEEEeecc------cce-
Q 038454 186 LKLSL---TE--------DEDKVSRARRLLGKL---KAKKKFVLILDDI---------DNH-TFCWGLRS------MGC- 234 (359)
Q Consensus 186 l~~~~---~~--------~~~~~~~~~~l~~~l---~~~k~~LlVlDdv---------~~g-~ilvTtr~------~~~- 234 (359)
++... .. ..+.+.....+.+.| .+ +|+||||||+ .+| +||||||. +..
T Consensus 206 L~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~-KRvLLVLDDVwd~eqLe~f~pGSRILVTTRd~~Va~~l~g~ 284 (1221)
T 1vt4_I 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY-ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAA 284 (1221)
T ss_dssp HHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTT-SSCEEEEESCCCHHHHHHHHSSCCEEEECSCSHHHHHHHHH
T ss_pred HhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcC-CCEEEEEeCcChHHHHHhhCCCeEEEEeccChHHHHhcCCC
Confidence 53211 10 112344556666665 44 9999999999 577 99999992 121
Q ss_pred eeeecC------CCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHHHHhhcCC-CChhHHHHHHHHH
Q 038454 235 EEVRVP------PLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTVVGCMRGV-DEIHEWRNALNEL 307 (359)
Q Consensus 235 ~~~~l~------~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~L~~~-~~~~~w~~~l~~~ 307 (359)
..+.++ +|+.+||++||.... +.. ..+...+| |+|+||||+++|+.|+.+ .+..+|...
T Consensus 285 ~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~------~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~---- 350 (1221)
T 1vt4_I 285 TTTHISLDHHSMTLTPDEVKSLLLKYL-DCR------PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV---- 350 (1221)
T ss_dssp SSCEEEECSSSSCCCHHHHHHHHHHHH-CCC------TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC----
T ss_pred eEEEecCccccCCcCHHHHHHHHHHHc-CCC------HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC----
Confidence 256666 999999999999984 221 12233333 999999999999999985 367778642
Q ss_pred hhcccccCCChhhHhhHHHHhhhcCCCcch-hHHHhhccccCCCCccCCCC
Q 038454 308 RGLVRSFSGINADVLGRLEFSYLRLKDKKV-QHCFLYCALYPEDFAISKDE 357 (359)
Q Consensus 308 ~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~-k~cf~~~s~fp~~~~i~~~~ 357 (359)
....+..+|.+||+.| |++. |.||+|||+||+++.|+++.
T Consensus 351 ---------~~~~I~aaLelSYd~L-p~eelK~cFL~LAIFPed~~I~~el 391 (1221)
T 1vt4_I 351 ---------NCDKLTTIIESSLNVL-EPAEYRKMFDRLSVFPPSAHIPTIL 391 (1221)
T ss_dssp ---------SCHHHHHHHHHHHHHS-CTTHHHHHHHHTTSSCTTSCEEHHH
T ss_pred ---------ChhHHHHHHHHHHHhC-CHHHHHHHHHHHhCCCCCCCCCHHH
Confidence 1368999999999999 7788 99999999999999998653
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.98 E-value=6.3e-32 Score=269.46 Aligned_cols=243 Identities=19% Similarity=0.239 Sum_probs=185.8
Q ss_pred cCCcccccccchHHHHHHHHHHhcC--CCccEEEEEcCCCCcHHHHHHHHHcCcccc-cCCCc-cEEEEEeCCCcCHHHH
Q 038454 103 ILPTTTLVGENTKKIVKKVWEDLMG--DKVTKIGVWGMGGFGKTAIMRHINNRPQEE-TNEFS-DVIWVTVSQPLDLVKL 178 (359)
Q Consensus 103 ~~~~~~~vGr~~~~~~~~l~~~l~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~~F~-~~~wv~~~~~~~~~~~ 178 (359)
|.+++.||||+. ++++|.+++.. ++.++|+|+|+||+||||||.+++++ ... ..+|+ .++|++++.. +...+
T Consensus 120 P~~~~~~vGR~~--~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~-~~~~~~~f~~~v~wv~~~~~-~~~~~ 195 (591)
T 1z6t_A 120 PQRPVVFVTRKK--LVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRD-HSLLEGCFPGGVHWVSVGKQ-DKSGL 195 (591)
T ss_dssp CCCCSSCCCCHH--HHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCC-HHHHHHHCTTCEEEEEEESC-CHHHH
T ss_pred CCCCCeecccHH--HHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhc-hhHHHhhCCCceEEEECCCC-chHHH
Confidence 445678999977 99999999873 56789999999999999999999998 444 67884 7999999765 33333
Q ss_pred HHH---HHHHhcCC----CCCCccHHHHHHHHHHHHhcC-CcEEEEEecC---------CCC-eEEEeecc------cce
Q 038454 179 QAE---IAMALKLS----LTEDEDKVSRARRLLGKLKAK-KKFVLILDDI---------DNH-TFCWGLRS------MGC 234 (359)
Q Consensus 179 ~~~---i~~~l~~~----~~~~~~~~~~~~~l~~~l~~~-k~~LlVlDdv---------~~g-~ilvTtr~------~~~ 234 (359)
+.. ++..++.. .....+.......+...+.+. +++||||||+ .+| +||+|||. ...
T Consensus 196 ~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l~~~~~ilvTsR~~~~~~~~~~ 275 (591)
T 1z6t_A 196 LMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAFDSQCQILLTTRDKSVTDSVMG 275 (591)
T ss_dssp HHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTTCSSCEEEEEESCGGGGTTCCS
T ss_pred HHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHhcCCCeEEEECCCcHHHHhcCC
Confidence 333 34455531 122345667777788877763 6899999999 567 99999991 122
Q ss_pred eeeec---CCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHHHHhhcCCCChhHHHHHHHHHhhcc
Q 038454 235 EEVRV---PPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTVVGCMRGVDEIHEWRNALNELRGLV 311 (359)
Q Consensus 235 ~~~~l---~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~L~~~~~~~~w~~~l~~~~~~~ 311 (359)
..+.+ ++|+.++|++||...++... ....+.+.+|+++|+|+||||..+|+.|+.+ ...|...++.+....
T Consensus 276 ~~~~v~~l~~L~~~ea~~L~~~~~~~~~----~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~--~~~w~~~l~~l~~~~ 349 (591)
T 1z6t_A 276 PKYVVPVESSLGKEKGLEILSLFVNMKK----ADLPEQAHSIIKECKGSPLVVSLIGALLRDF--PNRWEYYLKQLQNKQ 349 (591)
T ss_dssp CEEEEECCSSCCHHHHHHHHHHHHTSCG----GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHS--TTCHHHHHHHHHSCC
T ss_pred CceEeecCCCCCHHHHHHHHHHHhCCCc----ccccHHHHHHHHHhCCCcHHHHHHHHHHhcC--chhHHHHHHHHHHhH
Confidence 33444 58999999999999886521 1224578999999999999999999999874 347999988887543
Q ss_pred cc-----cCCChhhHhhHHHHhhhcCCCcchhHHHhhccccCCCCccCCC
Q 038454 312 RS-----FSGINADVLGRLEFSYLRLKDKKVQHCFLYCALYPEDFAISKD 356 (359)
Q Consensus 312 ~~-----~~~~~~~~~~~l~~sy~~L~~~~~k~cf~~~s~fp~~~~i~~~ 356 (359)
.. .......+..++..||+.| |++.|.||++||+||+++.|+.+
T Consensus 350 ~~~~~~~~~~~~~~l~~~l~~s~~~L-~~~~~~~l~~la~f~~~~~i~~~ 398 (591)
T 1z6t_A 350 FKRIRKSSSYDYEALDEAMSISVEML-REDIKDYYTDLSILQKDVKVPTK 398 (591)
T ss_dssp CCCSSCCCSSCCHHHHHHHHHHHHTS-CTTTHHHHHHGGGCCTTCCEEHH
T ss_pred HHHhhhccccchHHHHHHHHHHHHhC-CHHHHHHHHHccccCCCCccCHH
Confidence 21 1123457999999999999 88899999999999999988754
No 5
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.56 E-value=1.7e-13 Score=127.04 Aligned_cols=171 Identities=13% Similarity=0.111 Sum_probs=113.9
Q ss_pred CCcccccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCC-----cCHHHH
Q 038454 104 LPTTTLVGENTKKIVKKVWEDLMGDKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQP-----LDLVKL 178 (359)
Q Consensus 104 ~~~~~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~-----~~~~~~ 178 (359)
..+..++||+. +++.|.. +.. +++.|+|++|+|||+|++++++. ... ..+|+++... .+...+
T Consensus 10 ~~~~~~~gR~~--el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~ 77 (357)
T 2fna_A 10 DNRKDFFDREK--EIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINE---LNL---PYIYLDLRKFEERNYISYKDF 77 (357)
T ss_dssp CSGGGSCCCHH--HHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHH---HTC---CEEEEEGGGGTTCSCCCHHHH
T ss_pred CCHHHhcChHH--HHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHh---cCC---CEEEEEchhhccccCCCHHHH
Confidence 34678999976 8999988 765 69999999999999999999987 222 2578887642 344555
Q ss_pred HHHHHHHhcC------------------CCC-----------CCccHHHHHHHHHHHHhcCCcEEEEEecC---------
Q 038454 179 QAEIAMALKL------------------SLT-----------EDEDKVSRARRLLGKLKAKKKFVLILDDI--------- 220 (359)
Q Consensus 179 ~~~i~~~l~~------------------~~~-----------~~~~~~~~~~~l~~~l~~~k~~LlVlDdv--------- 220 (359)
+..+...+.. ..+ ...........+.+. .. ++++|||||+
T Consensus 78 ~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~-~~~vlvlDe~~~~~~~~~~ 155 (357)
T 2fna_A 78 LLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQA-SK-DNVIIVLDEAQELVKLRGV 155 (357)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHT-CS-SCEEEEEETGGGGGGCTTC
T ss_pred HHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhc-CC-CCeEEEEECHHHhhccCch
Confidence 5555444310 000 011223333333221 11 4899999998
Q ss_pred ------------CCC-eEEEeeccc----------------c---eeeeecCCCChHHHHHHHHHhhcCCCCCCCCchHH
Q 038454 221 ------------DNH-TFCWGLRSM----------------G---CEEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEE 268 (359)
Q Consensus 221 ------------~~g-~ilvTtr~~----------------~---~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~ 268 (359)
.++ .+++|++.. . ...+.+.+|+.+++.+++...+...+. .....
T Consensus 156 ~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~-~~~~~-- 232 (357)
T 2fna_A 156 NLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADI-DFKDY-- 232 (357)
T ss_dssp CCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTC-CCCCH--
T ss_pred hHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCC-CCCcH--
Confidence 236 888988711 0 146899999999999999875421111 11111
Q ss_pred HHHHHHHHcCCchhHHHHHHHhhcC
Q 038454 269 IINSVVEECAGLQLAIFTVVGCMRG 293 (359)
Q Consensus 269 ~~~~i~~~c~g~Plai~~~~~~L~~ 293 (359)
..|+..|+|+|+++..++..+..
T Consensus 233 --~~i~~~t~G~P~~l~~~~~~~~~ 255 (357)
T 2fna_A 233 --EVVYEKIGGIPGWLTYFGFIYLD 255 (357)
T ss_dssp --HHHHHHHCSCHHHHHHHHHHHHH
T ss_pred --HHHHHHhCCCHHHHHHHHHHHcc
Confidence 78999999999999999887643
No 6
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.54 E-value=1.8e-13 Score=126.60 Aligned_cols=175 Identities=15% Similarity=0.131 Sum_probs=122.9
Q ss_pred ccCCcccccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCc------CH
Q 038454 102 LILPTTTLVGENTKKIVKKVWEDLMGDKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPL------DL 175 (359)
Q Consensus 102 ~~~~~~~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~------~~ 175 (359)
++..+..++||+. +++.|..++..+ +++.|+|++|+|||||++++++. . + .+|+++.... +.
T Consensus 7 ~~~~~~~~~gR~~--el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~-~---~----~~~~~~~~~~~~~~~~~~ 74 (350)
T 2qen_A 7 PKTRREDIFDREE--ESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNE-R---P----GILIDCRELYAERGHITR 74 (350)
T ss_dssp CCCSGGGSCSCHH--HHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHH-S---S----EEEEEHHHHHHTTTCBCH
T ss_pred CCCChHhcCChHH--HHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHH-c---C----cEEEEeecccccccCCCH
Confidence 3344678999976 889998888764 79999999999999999999987 2 1 6788765432 56
Q ss_pred HHHHHHHHHHhcC-----------------CCC-CCccHHHHHHHHHHHHhcCCcEEEEEecC----C------------
Q 038454 176 VKLQAEIAMALKL-----------------SLT-EDEDKVSRARRLLGKLKAKKKFVLILDDI----D------------ 221 (359)
Q Consensus 176 ~~~~~~i~~~l~~-----------------~~~-~~~~~~~~~~~l~~~l~~~k~~LlVlDdv----~------------ 221 (359)
..++..+...+.. ..+ ...+.......+.+.....++++|||||+ .
T Consensus 75 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~ 154 (350)
T 2qen_A 75 EELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLAL 154 (350)
T ss_dssp HHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHH
Confidence 6677766665532 000 01244555555555554324899999998 1
Q ss_pred --------CC-eEEEeecc----c------c---------eeeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHH
Q 038454 222 --------NH-TFCWGLRS----M------G---------CEEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSV 273 (359)
Q Consensus 222 --------~g-~ilvTtr~----~------~---------~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i 273 (359)
++ .+++|++. . . ...+.+.+|+.+|+.+++.......+.. ...+.+..|
T Consensus 155 L~~~~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~---~~~~~~~~i 231 (350)
T 2qen_A 155 FAYAYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLD---VPENEIEEA 231 (350)
T ss_dssp HHHHHHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCC---CCHHHHHHH
T ss_pred HHHHHHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHH
Confidence 35 78888761 0 0 1368999999999999998754222211 124677899
Q ss_pred HHHcCCchhHHHHHHHhh
Q 038454 274 VEECAGLQLAIFTVVGCM 291 (359)
Q Consensus 274 ~~~c~g~Plai~~~~~~L 291 (359)
+..|+|+|+++..++..+
T Consensus 232 ~~~tgG~P~~l~~~~~~~ 249 (350)
T 2qen_A 232 VELLDGIPGWLVVFGVEY 249 (350)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHH
Confidence 999999999999988765
No 7
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.53 E-value=2.6e-13 Score=128.61 Aligned_cols=226 Identities=12% Similarity=0.095 Sum_probs=143.7
Q ss_pred cccccccchHHHHHHHHHHh-c----C--CCccEEEE--EcCCCCcHHHHHHHHHcCcccc--cCCCc-cEEEEEeCCCc
Q 038454 106 TTTLVGENTKKIVKKVWEDL-M----G--DKVTKIGV--WGMGGFGKTAIMRHINNRPQEE--TNEFS-DVIWVTVSQPL 173 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l-~----~--~~~~vi~I--~G~gGiGKTtLa~~v~~~~~~~--~~~F~-~~~wv~~~~~~ 173 (359)
+..++||+. +++.|..++ . . .....+.| +|++|+||||||+.+++..... ...|. .++|+++....
T Consensus 21 p~~l~gR~~--el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (412)
T 1w5s_A 21 PPELRVRRG--EAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAP 98 (412)
T ss_dssp CSSCSSSCH--HHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCC
T ss_pred CCCCCChHH--HHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCC
Confidence 468999987 788887777 3 2 24566777 9999999999999999873111 01223 36788876777
Q ss_pred CHHHHHHHHHHHhcCCCCC-CccHHHHHHHHHHHHhc-CCcEEEEEecC------------------------C--C--C
Q 038454 174 DLVKLQAEIAMALKLSLTE-DEDKVSRARRLLGKLKA-KKKFVLILDDI------------------------D--N--H 223 (359)
Q Consensus 174 ~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l~~-~k~~LlVlDdv------------------------~--~--g 223 (359)
+...++..++.+++...+. ..+.......+.+.+.. +++++|||||+ . . .
T Consensus 99 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 178 (412)
T 1w5s_A 99 NLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVN 178 (412)
T ss_dssp SHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCC
T ss_pred CHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCc
Confidence 8999999999999765332 23455566666666652 37999999998 1 2 3
Q ss_pred --eEEEeeccc------c----------eeeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcC------C
Q 038454 224 --TFCWGLRSM------G----------CEEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECA------G 279 (359)
Q Consensus 224 --~ilvTtr~~------~----------~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~------g 279 (359)
.+|+||+.. . ...+.+++|+.++++++|...+..... ...-..+.+..|++.|+ |
T Consensus 179 ~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~G 257 (412)
T 1w5s_A 179 RIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLR-DTVWEPRHLELISDVYGEDKGGDG 257 (412)
T ss_dssp BEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBC-TTSCCHHHHHHHHHHHCGGGTSCC
T ss_pred eEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCC-CCCCChHHHHHHHHHHHHhccCCC
Confidence 477787611 0 123899999999999999765421111 11123567788999999 9
Q ss_pred chhHHHHHHHhhc------CC--CChhHHHHHHHHHhhcccccCCChhhHhhHHHHhhhcCCCcchhHHHhhcccc
Q 038454 280 LQLAIFTVVGCMR------GV--DEIHEWRNALNELRGLVRSFSGINADVLGRLEFSYLRLKDKKVQHCFLYCALY 347 (359)
Q Consensus 280 ~Plai~~~~~~L~------~~--~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cf~~~s~f 347 (359)
.|..+..++.... .. -+...+..++..... ...+.-++..| |+..+.++..++.+
T Consensus 258 ~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~------------~~~~~~~l~~l-~~~~~~~l~aia~l 320 (412)
T 1w5s_A 258 SARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA------------ASIQTHELEAL-SIHELIILRLIAEA 320 (412)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------------CCSSSSS-CHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc------------cchHHHHHHcC-CHHHHHHHHHHHHH
Confidence 9976655543211 11 223334433332110 12233456677 77777777777754
No 8
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.41 E-value=9e-12 Score=116.68 Aligned_cols=199 Identities=18% Similarity=0.236 Sum_probs=131.0
Q ss_pred cccccccchHHHHHHHHHHhc----CCCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHH
Q 038454 106 TTTLVGENTKKIVKKVWEDLM----GDKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAE 181 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 181 (359)
+..++||+. +++.+..++. .+....+.|+|++|+||||||+.+++.+......-...+|++.....+...++..
T Consensus 19 p~~~~gr~~--e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 96 (386)
T 2qby_A 19 PDELPHRED--QIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLAD 96 (386)
T ss_dssp CSCCTTCHH--HHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHH
T ss_pred CCCCCChHH--HHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHH
Confidence 478999976 8888888886 4556789999999999999999999873111110124678877666677888888
Q ss_pred HHHHhcCCCC-CCccHHHHHHHHHHHHhc-CCcEEEEEecC--------------------C-C--C-eEEEeecc----
Q 038454 182 IAMALKLSLT-EDEDKVSRARRLLGKLKA-KKKFVLILDDI--------------------D-N--H-TFCWGLRS---- 231 (359)
Q Consensus 182 i~~~l~~~~~-~~~~~~~~~~~l~~~l~~-~k~~LlVlDdv--------------------~-~--g-~ilvTtr~---- 231 (359)
++.+++...+ ...+.......+.+.+.. +++.+||||++ . + + .+|+||+.
T Consensus 97 i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~ 176 (386)
T 2qby_A 97 LLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFV 176 (386)
T ss_dssp HTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGG
T ss_pred HHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChH
Confidence 8887765432 123455556667666654 25899999998 1 2 3 56777761
Q ss_pred ----------cceeeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcC---CchhHHHHHHHhh---c---
Q 038454 232 ----------MGCEEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECA---GLQLAIFTVVGCM---R--- 292 (359)
Q Consensus 232 ----------~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~---g~Plai~~~~~~L---~--- 292 (359)
.....+.+++++.++..+++...+..... ...-..+....+++.++ |.|..+..+.... .
T Consensus 177 ~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~ 255 (386)
T 2qby_A 177 DLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFK-PGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERM 255 (386)
T ss_dssp GGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBC-SSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred hhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhcc-CCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc
Confidence 11146899999999999999886421110 11223456677888887 9998544333221 1
Q ss_pred C--CCChhHHHHHHHHH
Q 038454 293 G--VDEIHEWRNALNEL 307 (359)
Q Consensus 293 ~--~~~~~~w~~~l~~~ 307 (359)
. .-+.+.+..++...
T Consensus 256 ~~~~i~~~~v~~a~~~~ 272 (386)
T 2qby_A 256 KDTKVKEEYVYMAKEEI 272 (386)
T ss_dssp TCSSCCHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHH
Confidence 1 24556666665554
No 9
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.39 E-value=2.5e-11 Score=113.85 Aligned_cols=220 Identities=13% Similarity=0.084 Sum_probs=142.1
Q ss_pred cccccccchHHHHHHHHHHh----cCCCccEEEEEcCCCCcHHHHHHHHHcCcccc---cCCC--ccEEEEEeCCCc-CH
Q 038454 106 TTTLVGENTKKIVKKVWEDL----MGDKVTKIGVWGMGGFGKTAIMRHINNRPQEE---TNEF--SDVIWVTVSQPL-DL 175 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~~F--~~~~wv~~~~~~-~~ 175 (359)
+..++||+. +++.+..++ ..+..+.+.|+|++|+|||+||+.+++.+... ...+ ...+|+++.... +.
T Consensus 19 p~~l~gr~~--~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 96 (384)
T 2qby_B 19 FKEIPFRED--ILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTP 96 (384)
T ss_dssp CSSCTTCHH--HHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCH
T ss_pred CCCCCChHH--HHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCH
Confidence 378999976 666666555 34556799999999999999999999873111 1112 246788877666 88
Q ss_pred HHHHHHHHHHhcC-CCC-CCccHHHHHHHHHHHHhcCCcEEEEEecC-----C--------------CC-eEEEeeccc-
Q 038454 176 VKLQAEIAMALKL-SLT-EDEDKVSRARRLLGKLKAKKKFVLILDDI-----D--------------NH-TFCWGLRSM- 232 (359)
Q Consensus 176 ~~~~~~i~~~l~~-~~~-~~~~~~~~~~~l~~~l~~~k~~LlVlDdv-----~--------------~g-~ilvTtr~~- 232 (359)
..++..++..+.. ... ...+.......+.+.+.. ++.+|||||+ . .+ .+|+||+..
T Consensus 97 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~-~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~ 175 (384)
T 2qby_B 97 QAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRN-IRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDIN 175 (384)
T ss_dssp HHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSS-SCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTT
T ss_pred HHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhcc-CCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCc
Confidence 8899999988832 211 123345566777777776 5559999999 1 45 788888721
Q ss_pred -----------c-eeeeecCCCChHHHHHHHHHhhcC--CCCCCCCchHHHHHHHHHHcC---CchhH-HHHHHHh--hc
Q 038454 233 -----------G-CEEVRVPPLSKEEALNLFLDKVGR--NILHVPTLNEEIINSVVEECA---GLQLA-IFTVVGC--MR 292 (359)
Q Consensus 233 -----------~-~~~~~l~~L~~~ea~~lf~~~~~~--~~~~~~~~~~~~~~~i~~~c~---g~Pla-i~~~~~~--L~ 292 (359)
. +..+.+++++.++..++|...+.. .....+ .+..+.+++.|+ |.|.. +..+-.. +.
T Consensus 176 ~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a 252 (384)
T 2qby_B 176 VRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD---DEILSYIAAISAKEHGDARKAVNLLFRAAQLA 252 (384)
T ss_dssp TTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC---SHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred hHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC---HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHh
Confidence 0 237899999999999999987531 111122 345677888887 88873 3333322 22
Q ss_pred ---CCCChhHHHHHHHHHhhcccccCCChhhHhhHHHHhhhcCCCcchhHHHhhcc
Q 038454 293 ---GVDEIHEWRNALNELRGLVRSFSGINADVLGRLEFSYLRLKDKKVQHCFLYCA 345 (359)
Q Consensus 293 ---~~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cf~~~s 345 (359)
..-+.+.+..+++.... ..+.-++..| ++..+..+..++
T Consensus 253 ~~~~~i~~~~v~~~~~~~~~-------------~~~~~~~~~l-~~~~~~~l~al~ 294 (384)
T 2qby_B 253 SGGGIIRKEHVDKAIVDYEQ-------------ERLIEAVKAL-PFHYKLALRSLI 294 (384)
T ss_dssp TSSSCCCHHHHHHHHHHHHH-------------HHHHHHHHSS-CHHHHHHHHHHH
T ss_pred cCCCccCHHHHHHHHHHHhc-------------chHHHHHHcC-CHHHHHHHHHHH
Confidence 22567777777766531 2244455666 555444444343
No 10
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.38 E-value=6.1e-11 Score=111.08 Aligned_cols=221 Identities=17% Similarity=0.195 Sum_probs=143.3
Q ss_pred cccccccchHHHHHHHHHHhc----CCCccEEEEEcCCCCcHHHHHHHHHcCccccc---CCCccEEEEEeCCCcCHHHH
Q 038454 106 TTTLVGENTKKIVKKVWEDLM----GDKVTKIGVWGMGGFGKTAIMRHINNRPQEET---NEFSDVIWVTVSQPLDLVKL 178 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~~F~~~~wv~~~~~~~~~~~ 178 (359)
+..++||+. +++.+..++. .+..+.+.|+|++|+||||||+.+++.+.... +.-...+|++.....+...+
T Consensus 18 p~~~~gr~~--~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 95 (387)
T 2v1u_A 18 PDVLPHREA--ELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRV 95 (387)
T ss_dssp CSCCTTCHH--HHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHH
T ss_pred CCCCCCHHH--HHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHH
Confidence 378999976 8888888873 34567899999999999999999998731110 10123678888888889999
Q ss_pred HHHHHHHhcCCCCC-CccHHHHHHHHHHHHhc-CCcEEEEEecC--------------------C----CC--eEEEeec
Q 038454 179 QAEIAMALKLSLTE-DEDKVSRARRLLGKLKA-KKKFVLILDDI--------------------D----NH--TFCWGLR 230 (359)
Q Consensus 179 ~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l~~-~k~~LlVlDdv--------------------~----~g--~ilvTtr 230 (359)
+..++.+++...+. ..+.......+.+.+.. +++.+||||++ . ++ .+|.||+
T Consensus 96 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~ 175 (387)
T 2v1u_A 96 ASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITN 175 (387)
T ss_dssp HHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECS
T ss_pred HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEEC
Confidence 99999999764332 23455666777777743 36899999999 1 33 6677776
Q ss_pred c--------------cceeeeecCCCChHHHHHHHHHhhcC--CCCCCCCchHHHHHHHHHHcC---CchhHHH-HHHHh
Q 038454 231 S--------------MGCEEVRVPPLSKEEALNLFLDKVGR--NILHVPTLNEEIINSVVEECA---GLQLAIF-TVVGC 290 (359)
Q Consensus 231 ~--------------~~~~~~~l~~L~~~ea~~lf~~~~~~--~~~~~~~~~~~~~~~i~~~c~---g~Plai~-~~~~~ 290 (359)
. .....+.+++++.++..+++...+.. .....+ .+..+.+++.++ |.|..+. .+...
T Consensus 176 ~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~~l~~a 252 (387)
T 2v1u_A 176 SLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLD---PDVVPLCAALAAREHGDARRALDLLRVA 252 (387)
T ss_dssp CSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC---SSHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred CCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 1 11246899999999999999887531 111122 235567777777 9994333 32222
Q ss_pred hc-------CCCChhHHHHHHHHHhhcccccCCChhhHhhHHHHhhhcCCCcchhHHHhhcc
Q 038454 291 MR-------GVDEIHEWRNALNELRGLVRSFSGINADVLGRLEFSYLRLKDKKVQHCFLYCA 345 (359)
Q Consensus 291 L~-------~~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cf~~~s 345 (359)
.. ..-+.+.+..+++.... ..+.-++..| ++..+..+..++
T Consensus 253 ~~~a~~~~~~~i~~~~v~~a~~~~~~-------------~~~~~~~~~l-~~~~~~~l~a~~ 300 (387)
T 2v1u_A 253 GEIAERRREERVRREHVYSARAEIER-------------DRVSEVVRTL-PLHAKLVLLSIM 300 (387)
T ss_dssp HHHHHHTTCSCBCHHHHHHHHHHHHH-------------HHHHHHHHSS-CHHHHHHHHHHH
T ss_pred HHHHHHcCCCCcCHHHHHHHHHHHhh-------------chHHHHHHcC-CHHHHHHHHHHH
Confidence 11 12456667766665431 1234456667 555554444333
No 11
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.37 E-value=2.4e-11 Score=114.13 Aligned_cols=177 Identities=15% Similarity=0.214 Sum_probs=124.0
Q ss_pred cccccccchHHHHHHHHHHhcC----CCcc--EEEEEcCCCCcHHHHHHHHHcCcccccCCC-ccEEEEEeCCCcCHHHH
Q 038454 106 TTTLVGENTKKIVKKVWEDLMG----DKVT--KIGVWGMGGFGKTAIMRHINNRPQEETNEF-SDVIWVTVSQPLDLVKL 178 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l~~----~~~~--vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F-~~~~wv~~~~~~~~~~~ 178 (359)
++.++||+. +++.+..++.. +... .+.|+|++|+||||||+.+++.+ .... ..++|++.+...+...+
T Consensus 16 p~~l~gr~~--~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~---~~~~~~~~~~i~~~~~~~~~~~ 90 (389)
T 1fnn_A 16 PKRLPHREQ--QLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELY---KDKTTARFVYINGFIYRNFTAI 90 (389)
T ss_dssp CSCCTTCHH--HHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHH---TTSCCCEEEEEETTTCCSHHHH
T ss_pred CCCCCChHH--HHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHH---hhhcCeeEEEEeCccCCCHHHH
Confidence 367999976 77777777753 3334 89999999999999999999872 2221 24678887777788899
Q ss_pred HHHHHHHhcCCCCC-CccHHHHHHHHHHHHhc-CCcEEEEEecC-------------------C---CC-eEEEeeccc-
Q 038454 179 QAEIAMALKLSLTE-DEDKVSRARRLLGKLKA-KKKFVLILDDI-------------------D---NH-TFCWGLRSM- 232 (359)
Q Consensus 179 ~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l~~-~k~~LlVlDdv-------------------~---~g-~ilvTtr~~- 232 (359)
+..++..++...+. ..+.......+.+.+.. +++.+||||++ . .+ .+|++|+..
T Consensus 91 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 91 IGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp HHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred HHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 99999988764332 23455666666666643 36899999999 1 46 778777611
Q ss_pred -------------ceeeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHc---------CCchhHHHHHH
Q 038454 233 -------------GCEEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEEC---------AGLQLAIFTVV 288 (359)
Q Consensus 233 -------------~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c---------~g~Plai~~~~ 288 (359)
....+.+++++.++..+++...+..... ...-..+....+++.+ +|.|..+..+.
T Consensus 171 ~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l 247 (389)
T 1fnn_A 171 VLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLA-EGSYSEDILQMIADITGAQTPLDTNRGDARLAIDIL 247 (389)
T ss_dssp HHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBC-TTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHH
T ss_pred HHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcC-CCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHH
Confidence 1235899999999999999887532110 1122356778899999 78876554443
No 12
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.33 E-value=3.8e-11 Score=104.61 Aligned_cols=172 Identities=15% Similarity=0.210 Sum_probs=103.6
Q ss_pred cccccccchHHHHHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHH
Q 038454 106 TTTLVGENTKKIVKKVWEDLMGDK-VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAM 184 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 184 (359)
...++|++. .++.+..++..+. .+.+.|+|++|+||||||+.+++.+ .....+.. .... .... ...+..
T Consensus 22 ~~~~~g~~~--~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~-~~~~~~~~---~~~~---~~~~-~~~~~~ 91 (250)
T 1njg_A 22 FADVVGQEH--VLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL-NCETGITA---TPCG---VCDN-CREIEQ 91 (250)
T ss_dssp GGGCCSCHH--HHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHH-HCTTCSCS---SCCS---CSHH-HHHHHT
T ss_pred HHHHhCcHH--HHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh-cCCCCCCC---CCCc---ccHH-HHHHhc
Confidence 457999976 8888888887653 4589999999999999999998873 11111100 0000 0000 000000
Q ss_pred Hh-----cCCCCCCccHHHHHHHHHHHHh----cCCcEEEEEecC------------------CCC-eEEEeecc-----
Q 038454 185 AL-----KLSLTEDEDKVSRARRLLGKLK----AKKKFVLILDDI------------------DNH-TFCWGLRS----- 231 (359)
Q Consensus 185 ~l-----~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv------------------~~g-~ilvTtr~----- 231 (359)
.. ..... ..........+.+.+. .+++.+||+||+ ..+ .+|+||+.
T Consensus 92 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~ 170 (250)
T 1njg_A 92 GRFVDLIEIDAA-SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 170 (250)
T ss_dssp TCCSSEEEEETT-CGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSC
T ss_pred cCCcceEEecCc-ccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCC
Confidence 00 00000 0011111222222221 126799999999 245 78888861
Q ss_pred ----cceeeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHHHHhh
Q 038454 232 ----MGCEEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTVVGCM 291 (359)
Q Consensus 232 ----~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~L 291 (359)
..+..+.+++++.++..+++...+...+. .-..+....|++.|+|.|..+..+...+
T Consensus 171 ~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~---~~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 171 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHI---AHEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTC---CBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 12357899999999999999887643322 1224667889999999999988776544
No 13
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.32 E-value=8.8e-11 Score=100.96 Aligned_cols=162 Identities=14% Similarity=0.197 Sum_probs=106.1
Q ss_pred cccccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCc-cEEEEEeCCCcCHHHHHHHHHH
Q 038454 106 TTTLVGENTKKIVKKVWEDLMGDKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFS-DVIWVTVSQPLDLVKLQAEIAM 184 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~-~~~wv~~~~~~~~~~~~~~i~~ 184 (359)
...++|++. .++.+..++.....+.+.|+|++|+|||+||+.+++.+ ....+. ..+.++.+...+...+...+..
T Consensus 16 ~~~~~g~~~--~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (226)
T 2chg_A 16 LDEVVGQDE--VIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDL--FGENWRDNFIEMNASDERGIDVVRHKIKE 91 (226)
T ss_dssp GGGCCSCHH--HHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHH--HGGGGGGGEEEEETTCTTCHHHHHHHHHH
T ss_pred HHHHcCcHH--HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH--hccccccceEEeccccccChHHHHHHHHH
Confidence 457899966 88899999988766669999999999999999999873 112222 2344444443333332222211
Q ss_pred HhcCCCCCCccHHHHHHHHHHHHhcCCcEEEEEecC------------------CCC-eEEEeecc---------cceee
Q 038454 185 ALKLSLTEDEDKVSRARRLLGKLKAKKKFVLILDDI------------------DNH-TFCWGLRS---------MGCEE 236 (359)
Q Consensus 185 ~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv------------------~~g-~ilvTtr~---------~~~~~ 236 (359)
...... ....++.+||+||+ ..+ .+++||+. ..+..
T Consensus 92 ~~~~~~----------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~ 155 (226)
T 2chg_A 92 FARTAP----------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAV 155 (226)
T ss_dssp HHTSCC----------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEE
T ss_pred HhcccC----------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCce
Confidence 111100 11137899999999 345 78888871 12347
Q ss_pred eecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHHHHh
Q 038454 237 VRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTVVGC 290 (359)
Q Consensus 237 ~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~ 290 (359)
+.+.+++.++..+++...+...+.. -..+....+++.++|.|..+..+...
T Consensus 156 i~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~l~~~~~g~~r~l~~~l~~ 206 (226)
T 2chg_A 156 FRFKPVPKEAMKKRLLEICEKEGVK---ITEDGLEALIYISGGDFRKAINALQG 206 (226)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHTCC---BCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred eecCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 8999999999999998876432221 22466788999999999966554433
No 14
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.18 E-value=3.3e-11 Score=92.92 Aligned_cols=59 Identities=12% Similarity=0.255 Sum_probs=51.6
Q ss_pred hhHHHHHHHHHHhHHHHHHHHH-HhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhC
Q 038454 2 KNLERVLQEFNSQKEDIEATLK-AEGDRGKKPRTEVKNWLQNVQRINSKAQSIEQEVKKR 60 (359)
Q Consensus 2 ~~l~~~~~~L~~~l~~i~~~l~-a~~~~~~~~~~~~~~W~~~l~~~~~~~ed~~d~~~~~ 60 (359)
.+|++++++|+++|+.|+++|. ++.++....+++++.|+++||+++||+||++|+|..+
T Consensus 22 ~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~~ 81 (115)
T 3qfl_A 22 KGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLVQ 81 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999 8754223457899999999999999999999999753
No 15
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.13 E-value=7.9e-10 Score=100.94 Aligned_cols=161 Identities=16% Similarity=0.256 Sum_probs=104.4
Q ss_pred cccccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCc-cEEEEEeCCCcCHHHHHHHHHH
Q 038454 106 TTTLVGENTKKIVKKVWEDLMGDKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFS-DVIWVTVSQPLDLVKLQAEIAM 184 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~-~~~wv~~~~~~~~~~~~~~i~~ 184 (359)
...++|++. .++.+..++..+..+.+.++|++|+|||++|+.+++.+ ....+. ..++++.+...+...+ +.++.
T Consensus 20 ~~~~~g~~~--~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l--~~~~~~~~~~~~~~~~~~~~~~i-~~~~~ 94 (323)
T 1sxj_B 20 LSDIVGNKE--TIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHEL--LGRSYADGVLELNASDDRGIDVV-RNQIK 94 (323)
T ss_dssp GGGCCSCTH--HHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHH--HGGGHHHHEEEECTTSCCSHHHH-HTHHH
T ss_pred HHHHHCCHH--HHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHh--cCCcccCCEEEecCccccChHHH-HHHHH
Confidence 467999977 88899999988776669999999999999999999873 111122 2444444433232222 22222
Q ss_pred HhcCCCCCCccHHHHHHHHHHHHhcCCcEEEEEecC------------------CCC-eEEEeec---------ccceee
Q 038454 185 ALKLSLTEDEDKVSRARRLLGKLKAKKKFVLILDDI------------------DNH-TFCWGLR---------SMGCEE 236 (359)
Q Consensus 185 ~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv------------------~~g-~ilvTtr---------~~~~~~ 236 (359)
.+..... .+..+++.++|+||+ ..+ .+|++|+ ...+..
T Consensus 95 ~~~~~~~--------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~ 160 (323)
T 1sxj_B 95 HFAQKKL--------------HLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAI 160 (323)
T ss_dssp HHHHBCC--------------CCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEE
T ss_pred HHHhccc--------------cCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceE
Confidence 2210000 010226899999998 345 7777776 123457
Q ss_pred eecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhH-HHHHH
Q 038454 237 VRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLA-IFTVV 288 (359)
Q Consensus 237 ~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pla-i~~~~ 288 (359)
+.+.+++.++..+++...+...+. .-..+.+..|++.|+|.|.. +..+.
T Consensus 161 i~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~l~~~~~G~~r~a~~~l~ 210 (323)
T 1sxj_B 161 LRYSKLSDEDVLKRLLQIIKLEDV---KYTNDGLEAIIFTAEGDMRQAINNLQ 210 (323)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHTC---CBCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred EeecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 999999999999999887632221 12246678899999999954 44443
No 16
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.99 E-value=4.2e-09 Score=96.26 Aligned_cols=162 Identities=15% Similarity=0.195 Sum_probs=102.9
Q ss_pred cccccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCc-cEEEEEeCCCcCHHHHHHHHHH
Q 038454 106 TTTLVGENTKKIVKKVWEDLMGDKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFS-DVIWVTVSQPLDLVKLQAEIAM 184 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~-~~~wv~~~~~~~~~~~~~~i~~ 184 (359)
-..++|++. .++.+..++..+..+.+.++|++|+||||+|+.+++.+. ...+. ..+.++.+....... ....+.
T Consensus 24 ~~~~~g~~~--~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 98 (327)
T 1iqp_A 24 LDDIVGQEH--IVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELF--GENWRHNFLELNASDERGINV-IREKVK 98 (327)
T ss_dssp TTTCCSCHH--HHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHH--GGGHHHHEEEEETTCHHHHHT-THHHHH
T ss_pred HHHhhCCHH--HHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc--CCcccCceEEeeccccCchHH-HHHHHH
Confidence 456999966 888888888877766799999999999999999998731 11111 233343332111111 111111
Q ss_pred HhcCCCCCCccHHHHHHHHHHHHhcCCcEEEEEecC------------------CCC-eEEEeec---------ccceee
Q 038454 185 ALKLSLTEDEDKVSRARRLLGKLKAKKKFVLILDDI------------------DNH-TFCWGLR---------SMGCEE 236 (359)
Q Consensus 185 ~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv------------------~~g-~ilvTtr---------~~~~~~ 236 (359)
.+.... .+...++.++|+|++ ..+ .+|+||. ...+..
T Consensus 99 ~~~~~~---------------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~ 163 (327)
T 1iqp_A 99 EFARTK---------------PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAI 163 (327)
T ss_dssp HHHHSC---------------CGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEE
T ss_pred HHHhhC---------------CcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcE
Confidence 100000 011126889999998 345 7787776 123457
Q ss_pred eecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHHHHh
Q 038454 237 VRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTVVGC 290 (359)
Q Consensus 237 ~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~ 290 (359)
+.+.+++.++..+++...+...+. .-..+....|++.++|.|..+..+...
T Consensus 164 ~~~~~l~~~~~~~~l~~~~~~~~~---~~~~~~~~~l~~~~~g~~r~~~~~l~~ 214 (327)
T 1iqp_A 164 FRFRPLRDEDIAKRLRYIAENEGL---ELTEEGLQAILYIAEGDMRRAINILQA 214 (327)
T ss_dssp EECCCCCHHHHHHHHHHHHHTTTC---EECHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred EEecCCCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 899999999999999887644322 122467788999999999876554433
No 17
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.92 E-value=2.7e-08 Score=90.29 Aligned_cols=146 Identities=10% Similarity=0.135 Sum_probs=96.8
Q ss_pred ccccccchHHHHHHHHHHh----cCCCccEEEEEcCCCCcHHHHHHHHHcCcccccC-----CCccEEEEEeCCCcCHHH
Q 038454 107 TTLVGENTKKIVKKVWEDL----MGDKVTKIGVWGMGGFGKTAIMRHINNRPQEETN-----EFSDVIWVTVSQPLDLVK 177 (359)
Q Consensus 107 ~~~vGr~~~~~~~~l~~~l----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-----~F~~~~wv~~~~~~~~~~ 177 (359)
..+.||+. ++.+|...+ ..+..+.+.|+|++|+|||++++.+++.+..... .| ..++++...-.+...
T Consensus 20 ~~L~~Re~--E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~-~~v~INc~~~~t~~~ 96 (318)
T 3te6_A 20 ELLKSQVE--DFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIF-DYIHIDALELAGMDA 96 (318)
T ss_dssp HHHHHHHH--HHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCE-EEEEEETTCCC--HH
T ss_pred cccCCHHH--HHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCce-EEEEEeccccCCHHH
Confidence 34888876 666666555 4577889999999999999999999998422111 12 256777777778889
Q ss_pred HHHHHHHHhcCCCCCCccHHHHHHHHHHHH--hcCCcEEEEEecC------------------CCC--eEEEeec-----
Q 038454 178 LQAEIAMALKLSLTEDEDKVSRARRLLGKL--KAKKKFVLILDDI------------------DNH--TFCWGLR----- 230 (359)
Q Consensus 178 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~~k~~LlVlDdv------------------~~g--~ilvTtr----- 230 (359)
++..|++++.............+..+...+ ...++++++||++ ..+ .+|.++.
T Consensus 97 ~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~ 176 (318)
T 3te6_A 97 LYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTI 176 (318)
T ss_dssp HHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCC
T ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccc
Confidence 999999999653221122223334444433 1237899999999 223 3333343
Q ss_pred ----------ccceeeeecCCCChHHHHHHHHHhh
Q 038454 231 ----------SMGCEEVRVPPLSKEEALNLFLDKV 255 (359)
Q Consensus 231 ----------~~~~~~~~l~~L~~~ea~~lf~~~~ 255 (359)
+++...+.++|++.++-.+++...+
T Consensus 177 ~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl 211 (318)
T 3te6_A 177 REQINIMPSLKAHFTEIKLNKVDKNELQQMIITRL 211 (318)
T ss_dssp HHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHH
T ss_pred hhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHH
Confidence 2233568999999999999988876
No 18
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.85 E-value=4.9e-08 Score=88.73 Aligned_cols=158 Identities=13% Similarity=0.209 Sum_probs=101.6
Q ss_pred cccccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCc-cEEEEEeCCCcCHHHHHHHHHH
Q 038454 106 TTTLVGENTKKIVKKVWEDLMGDKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFS-DVIWVTVSQPLDLVKLQAEIAM 184 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~-~~~wv~~~~~~~~~~~~~~i~~ 184 (359)
-..++|++. .+..+..++..+..+.+.++|++|+|||++|+.+++.+ ....+. ..+.++.+.......
T Consensus 16 ~~~~~g~~~--~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l--~~~~~~~~~~~~~~~~~~~~~~------- 84 (319)
T 2chq_A 16 LDEVVGQDE--VIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDL--FGENWRDNFIEMNASDERGIDV------- 84 (319)
T ss_dssp GGGSCSCHH--HHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHH--HTTCHHHHCEEEETTSTTCTTT-------
T ss_pred HHHHhCCHH--HHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHh--cCCcccCCeEEEeCccccChHH-------
Confidence 467999966 88889888888776669999999999999999999873 122221 233344333211110
Q ss_pred HhcCCCCCCccHHHHHHHHHHH--HhcCCcEEEEEecC------------------CCC-eEEEeec---------ccce
Q 038454 185 ALKLSLTEDEDKVSRARRLLGK--LKAKKKFVLILDDI------------------DNH-TFCWGLR---------SMGC 234 (359)
Q Consensus 185 ~l~~~~~~~~~~~~~~~~l~~~--l~~~k~~LlVlDdv------------------~~g-~ilvTtr---------~~~~ 234 (359)
.......+... +...++.++|+|++ ..+ .+|++|. ...+
T Consensus 85 -----------~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~ 153 (319)
T 2chq_A 85 -----------VRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRC 153 (319)
T ss_dssp -----------SSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTC
T ss_pred -----------HHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhC
Confidence 00111111100 11126889999998 234 6777776 1234
Q ss_pred eeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHHH
Q 038454 235 EEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTVV 288 (359)
Q Consensus 235 ~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~ 288 (359)
..+.+.+++.++..+++...+...+. .-..+....+++.++|.|..+....
T Consensus 154 ~~i~~~~~~~~~~~~~l~~~~~~~~~---~i~~~~l~~l~~~~~G~~r~~~~~l 204 (319)
T 2chq_A 154 AVFRFKPVPKEAMKKRLLEICEKEGV---KITEDGLEALIYISGGDFRKAINAL 204 (319)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTCC---CBCHHHHHHHHHTTTTCHHHHHHHH
T ss_pred eEEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 57999999999999999887644322 1234667888999999998655443
No 19
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.84 E-value=2e-08 Score=83.88 Aligned_cols=47 Identities=21% Similarity=0.324 Sum_probs=41.3
Q ss_pred cccccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHcCc
Q 038454 106 TTTLVGENTKKIVKKVWEDLMGDKVTKIGVWGMGGFGKTAIMRHINNRP 154 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 154 (359)
...++|++. +++.+..++.....+.+.|+|++|+|||+||+.+++.+
T Consensus 21 ~~~~~g~~~--~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 21 LDPVIGRDE--EIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SCCCCSCHH--HHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccccccchH--HHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 457899976 89999999988777889999999999999999999873
No 20
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.82 E-value=2.6e-07 Score=84.24 Aligned_cols=174 Identities=12% Similarity=0.055 Sum_probs=102.6
Q ss_pred cccccccchHHHHHHHHHHhc-----CCCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHH
Q 038454 106 TTTLVGENTKKIVKKVWEDLM-----GDKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQA 180 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 180 (359)
...++|++. .+..+..++. ......+.|+|++|+|||+||+.+++.. .. ...+++.+......++..
T Consensus 11 ~~~~ig~~~--~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~---~~---~~~~~~~~~~~~~~~l~~ 82 (324)
T 1hqc_A 11 LDEYIGQER--LKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL---GV---NLRVTSGPAIEKPGDLAA 82 (324)
T ss_dssp TTTCCSCHH--HHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH---TC---CEEEECTTTCCSHHHHHH
T ss_pred HHHhhCHHH--HHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh---CC---CEEEEeccccCChHHHHH
Confidence 467999976 6666665553 2344678999999999999999999872 22 234555444434333333
Q ss_pred HHHHHhcCCC----CC-CccHHHHHHHHHHHHhcCCcEEEEEecC---------CCC-eEEEeecc---------cce-e
Q 038454 181 EIAMALKLSL----TE-DEDKVSRARRLLGKLKAKKKFVLILDDI---------DNH-TFCWGLRS---------MGC-E 235 (359)
Q Consensus 181 ~i~~~l~~~~----~~-~~~~~~~~~~l~~~l~~~k~~LlVlDdv---------~~g-~ilvTtr~---------~~~-~ 235 (359)
.+...+.... ++ ..-.......+.+.+.. ..+-+|.++- .++ .++.+|.. ... .
T Consensus 83 ~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~-~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~ 161 (324)
T 1hqc_A 83 ILANSLEEGDILFIDEIHRLSRQAEEHLYPAMED-FVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGI 161 (324)
T ss_dssp HHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHH-SEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSC
T ss_pred HHHHhccCCCEEEEECCcccccchHHHHHHHHHh-hhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccE
Confidence 2211111100 00 00112233444555554 4444444332 123 56666651 112 3
Q ss_pred eeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHHHHhh
Q 038454 236 EVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTVVGCM 291 (359)
Q Consensus 236 ~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~L 291 (359)
.+.+.+++.++..+++...+...+.. -..+....+++.|+|.|..+..+...+
T Consensus 162 ~i~l~~~~~~e~~~~l~~~~~~~~~~---~~~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 162 VEHLEYYTPEELAQGVMRDARLLGVR---ITEEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTTCC---CCHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred EEecCCCCHHHHHHHHHHHHHhcCCC---CCHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 68999999999999988876443221 224677889999999999887766544
No 21
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.79 E-value=1.1e-07 Score=88.53 Aligned_cols=166 Identities=16% Similarity=0.208 Sum_probs=98.0
Q ss_pred cccccccchHHHHHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHH
Q 038454 106 TTTLVGENTKKIVKKVWEDLMGDK-VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAM 184 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 184 (359)
...++|++. .++.+..++..+. ...+.|+|++|+||||+|+.+++.+ .....+.. ..+... .....+..
T Consensus 15 ~~~~vg~~~--~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l-~~~~~~~~---~~~~~~----~~~~~~~~ 84 (373)
T 1jr3_A 15 FADVVGQEH--VLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL-NCETGITA---TPCGVC----DNCREIEQ 84 (373)
T ss_dssp TTTSCSCHH--HHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHH-SCTTCSCS---SCCSSS----HHHHHHHT
T ss_pred hhhccCcHH--HHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHh-CCCCCCCC---CCCccc----HHHHHHhc
Confidence 356999966 8888888886654 4578999999999999999998873 11111100 000000 00011110
Q ss_pred Hh-------cCCC-CCCccHHHHHHHHHHHHh----cCCcEEEEEecC------------------CCC-eEEEeec---
Q 038454 185 AL-------KLSL-TEDEDKVSRARRLLGKLK----AKKKFVLILDDI------------------DNH-TFCWGLR--- 230 (359)
Q Consensus 185 ~l-------~~~~-~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv------------------~~g-~ilvTtr--- 230 (359)
.. .... ...... ..+.+.+. .+++.++|+||+ ..+ .+|++|.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~ 160 (373)
T 1jr3_A 85 GRFVDLIEIDAASRTKVEDT----RDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 160 (373)
T ss_dssp SCCSSCEEEETTCSCCSSCH----HHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGG
T ss_pred cCCCceEEecccccCCHHHH----HHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 00 0000 001111 22222222 126789999999 234 6666665
Q ss_pred ------ccceeeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHHH
Q 038454 231 ------SMGCEEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTVV 288 (359)
Q Consensus 231 ------~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~ 288 (359)
...+..+.+.+++.++..+++...+...+. .-..+....|++.++|.|..+..+.
T Consensus 161 ~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~---~~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 161 KLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI---AHEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC---CBCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred hCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 123467899999999999999876532221 1124567889999999999887654
No 22
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.74 E-value=2.3e-07 Score=85.67 Aligned_cols=169 Identities=13% Similarity=0.208 Sum_probs=102.8
Q ss_pred cccccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCc-cEEEEEeCCCcCHHHHHHHHHH
Q 038454 106 TTTLVGENTKKIVKKVWEDLMGDKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFS-DVIWVTVSQPLDLVKLQAEIAM 184 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~-~~~wv~~~~~~~~~~~~~~i~~ 184 (359)
-..++|++. .++.+..++..+..+.+.++|++|+||||+|+.+++.+. ....+. .+..++.+.......+ .+.+.
T Consensus 36 ~~~i~g~~~--~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 111 (353)
T 1sxj_D 36 LDEVTAQDH--AVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY-GPDLMKSRILELNASDERGISIV-REKVK 111 (353)
T ss_dssp TTTCCSCCT--THHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH-HHHHHTTSEEEECSSSCCCHHHH-TTHHH
T ss_pred HHHhhCCHH--HHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC-CCcccccceEEEccccccchHHH-HHHHH
Confidence 357899987 888999999887656699999999999999999998731 110111 2334444433333322 22222
Q ss_pred HhcC-CCCCCccHHHHHHHHHHHHhcCCcEEEEEecC------------------CCC-eEEEeec---------cccee
Q 038454 185 ALKL-SLTEDEDKVSRARRLLGKLKAKKKFVLILDDI------------------DNH-TFCWGLR---------SMGCE 235 (359)
Q Consensus 185 ~l~~-~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv------------------~~g-~ilvTtr---------~~~~~ 235 (359)
.+.. ........ ........+.-+|++|++ ... +++++|. ...+.
T Consensus 112 ~~~~~~~~~~~~~------~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~ 185 (353)
T 1sxj_D 112 NFARLTVSKPSKH------DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCS 185 (353)
T ss_dssp HHHHSCCCCCCTT------HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSE
T ss_pred HHhhhcccccchh------hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCc
Confidence 2111 00000000 000111125678999998 234 6777665 11235
Q ss_pred eeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHH
Q 038454 236 EVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTV 287 (359)
Q Consensus 236 ~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 287 (359)
.+.+.+++.++....+...+...+.. -..+..+.|++.++|.|..+..+
T Consensus 186 ~i~~~~~~~~~~~~~l~~~~~~~~~~---i~~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 186 KFRFKALDASNAIDRLRFISEQENVK---CDDGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTTCC---CCHHHHHHHHHHTSSCHHHHHHH
T ss_pred eEEeCCCCHHHHHHHHHHHHHHhCCC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 68999999999999988876433221 22567788999999999875544
No 23
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.69 E-value=7.3e-08 Score=83.74 Aligned_cols=151 Identities=16% Similarity=0.233 Sum_probs=95.3
Q ss_pred ccccccch-HHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHHH
Q 038454 107 TTLVGENT-KKIVKKVWEDLMGDKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAMA 185 (359)
Q Consensus 107 ~~~vGr~~-~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~ 185 (359)
..++|.+. +..+..+..+...+..+.+.|+|++|+||||||+.+++.+ ......+.|++.+...+. ...+
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~---~~~~~~~~~~~~~~~~~~---~~~~--- 98 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARA---NELERRSFYIPLGIHASI---STAL--- 98 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHH---HHTTCCEEEEEGGGGGGS---CGGG---
T ss_pred hhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH---HHcCCeEEEEEHHHHHHH---HHHH---
Confidence 46777332 4466777777766667889999999999999999999873 112234567765432110 0000
Q ss_pred hcCCCCCCccHHHHHHHHHHHHhcCCcEEEEEecC---------------------CCC--eEEEeec-cc----c----
Q 038454 186 LKLSLTEDEDKVSRARRLLGKLKAKKKFVLILDDI---------------------DNH--TFCWGLR-SM----G---- 233 (359)
Q Consensus 186 l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv---------------------~~g--~ilvTtr-~~----~---- 233 (359)
.+.+ . ++.+||+||+ ..+ .+++||+ .. .
T Consensus 99 ------------------~~~~-~-~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~ 158 (242)
T 3bos_A 99 ------------------LEGL-E-QFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPD 158 (242)
T ss_dssp ------------------GTTG-G-GSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHH
T ss_pred ------------------HHhc-c-CCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhh
Confidence 0011 1 4567777877 224 4777776 11 0
Q ss_pred ----e---eeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHHHH
Q 038454 234 ----C---EEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTVVG 289 (359)
Q Consensus 234 ----~---~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~ 289 (359)
. ..+.+++++.++..+++...+...+. .-..+....+++.++|.+-.+..+..
T Consensus 159 l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~l~~~~~g~~r~l~~~l~ 218 (242)
T 3bos_A 159 LVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGL---QLPEDVGRFLLNRMARDLRTLFDVLD 218 (242)
T ss_dssp HHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTC---CCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred hhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHccCCHHHHHHHHH
Confidence 1 56899999999999999887642222 12356678899999998877655443
No 24
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.62 E-value=5.1e-07 Score=86.16 Aligned_cols=155 Identities=15% Similarity=0.233 Sum_probs=96.6
Q ss_pred cccccccchHHHH---HHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCC-cCHHHHHHH
Q 038454 106 TTTLVGENTKKIV---KKVWEDLMGDKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQP-LDLVKLQAE 181 (359)
Q Consensus 106 ~~~~vGr~~~~~~---~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~ 181 (359)
-..++|.+. .+ ..|...+..+..+.+.++|++|+||||||+.+++. .... ++.++.. .....+ +.
T Consensus 25 l~~ivGq~~--~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~---~~~~-----f~~l~a~~~~~~~i-r~ 93 (447)
T 3pvs_A 25 LAQYIGQQH--LLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARY---ANAD-----VERISAVTSGVKEI-RE 93 (447)
T ss_dssp TTTCCSCHH--HHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHH---TTCE-----EEEEETTTCCHHHH-HH
T ss_pred HHHhCCcHH--HHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHH---hCCC-----eEEEEeccCCHHHH-HH
Confidence 357899865 55 66777777777788999999999999999999987 2222 2222211 122221 11
Q ss_pred HHHHhcCCCCCCccHHHHHHHHHHHHhcCCcEEEEEecC---------------CCC--eEEEee-c----------ccc
Q 038454 182 IAMALKLSLTEDEDKVSRARRLLGKLKAKKKFVLILDDI---------------DNH--TFCWGL-R----------SMG 233 (359)
Q Consensus 182 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv---------------~~g--~ilvTt-r----------~~~ 233 (359)
............++.+|+||++ ..| .+|.+| . ...
T Consensus 94 -----------------~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~~v~lI~att~n~~~~l~~aL~sR 156 (447)
T 3pvs_A 94 -----------------AIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSR 156 (447)
T ss_dssp -----------------HHHHHHHHHHTTCCEEEEEETTTCC------CCHHHHHTTSCEEEEEESSCGGGSSCHHHHTT
T ss_pred -----------------HHHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcCceEEEecCCCCcccccCHHHhCc
Confidence 1111111111237899999999 234 444444 3 123
Q ss_pred eeeeecCCCChHHHHHHHHHhhcCCCC----CCCCchHHHHHHHHHHcCCchhHHHHHH
Q 038454 234 CEEVRVPPLSKEEALNLFLDKVGRNIL----HVPTLNEEIINSVVEECAGLQLAIFTVV 288 (359)
Q Consensus 234 ~~~~~l~~L~~~ea~~lf~~~~~~~~~----~~~~~~~~~~~~i~~~c~g~Plai~~~~ 288 (359)
+..+.+.+++.++...++.+.+..... ....-..+..+.|++.++|.+-.+..+.
T Consensus 157 ~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~L 215 (447)
T 3pvs_A 157 ARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTL 215 (447)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHH
T ss_pred eeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 457899999999999998887643110 0111235667888888999887655443
No 25
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.60 E-value=1.3e-06 Score=78.10 Aligned_cols=175 Identities=13% Similarity=0.163 Sum_probs=101.0
Q ss_pred cccccccchHHHHHHHHHHhcC-------------CCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCC
Q 038454 106 TTTLVGENTKKIVKKVWEDLMG-------------DKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQP 172 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~ 172 (359)
-..++|.+. .++.|...+.. ...+.+.|+|++|+|||+||+.+++.+ ... .+.++.+.-
T Consensus 16 ~~~i~G~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~---~~~---~~~v~~~~~ 87 (285)
T 3h4m_A 16 YEDIGGLEK--QMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET---NAT---FIRVVGSEL 87 (285)
T ss_dssp GGGSCSCHH--HHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT---TCE---EEEEEGGGG
T ss_pred HHHhcCHHH--HHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCC---EEEEehHHH
Confidence 467899976 66666655522 345679999999999999999999872 221 223332211
Q ss_pred cCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhcCCcEEEEEecC--------------------------------
Q 038454 173 LDLVKLQAEIAMALKLSLTEDEDKVSRARRLLGKLKAKKKFVLILDDI-------------------------------- 220 (359)
Q Consensus 173 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv-------------------------------- 220 (359)
.... ..........+........+.+|+||++
T Consensus 88 --------------~~~~--~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~ 151 (285)
T 3h4m_A 88 --------------VKKF--IGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGF 151 (285)
T ss_dssp --------------CCCS--TTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTT
T ss_pred --------------HHhc--cchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCC
Confidence 0000 1112222333333333336788999998
Q ss_pred --CCC-eEEEeec----------cc-ce-eeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCC-chhHH
Q 038454 221 --DNH-TFCWGLR----------SM-GC-EEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAG-LQLAI 284 (359)
Q Consensus 221 --~~g-~ilvTtr----------~~-~~-~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g-~Plai 284 (359)
..+ .||.||. .. .. ..+.+++.+.++..++|...+.......... ...++..+.| .|-.+
T Consensus 152 ~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~----~~~l~~~~~g~~~~~i 227 (285)
T 3h4m_A 152 DARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVN----LEEIAKMTEGCVGAEL 227 (285)
T ss_dssp CSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHHCTTCCHHHH
T ss_pred CCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCC----HHHHHHHcCCCCHHHH
Confidence 124 5677776 11 22 3589999999999999988765433212222 3557777776 45444
Q ss_pred HHHHHh------hcC--CCChhHHHHHHHHHh
Q 038454 285 FTVVGC------MRG--VDEIHEWRNALNELR 308 (359)
Q Consensus 285 ~~~~~~------L~~--~~~~~~w~~~l~~~~ 308 (359)
..+... .+. .-+.+.+..+++...
T Consensus 228 ~~l~~~a~~~a~~~~~~~I~~~d~~~al~~~~ 259 (285)
T 3h4m_A 228 KAICTEAGMNAIRELRDYVTMDDFRKAVEKIM 259 (285)
T ss_dssp HHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCcCCHHHHHHHHHHHH
Confidence 443222 121 145566666666654
No 26
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.58 E-value=2.1e-06 Score=81.86 Aligned_cols=179 Identities=17% Similarity=0.205 Sum_probs=108.6
Q ss_pred cccc-ccchHHHHHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCc--cEEEEEeCCCcCHHHHHHHH
Q 038454 107 TTLV-GENTKKIVKKVWEDLMGDK-VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFS--DVIWVTVSQPLDLVKLQAEI 182 (359)
Q Consensus 107 ~~~v-Gr~~~~~~~~l~~~l~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~--~~~wv~~~~~~~~~~~~~~i 182 (359)
..|+ |.........+.......+ ...+.|+|++|+||||||+.+++.+ ...+. .+++++.. .+...+
T Consensus 105 d~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l---~~~~~~~~v~~v~~~------~~~~~~ 175 (440)
T 2z4s_A 105 ENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYV---VQNEPDLRVMYITSE------KFLNDL 175 (440)
T ss_dssp GGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHH---HHHCCSSCEEEEEHH------HHHHHH
T ss_pred hhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHH---HHhCCCCeEEEeeHH------HHHHHH
Confidence 3455 7655444555555555443 6789999999999999999999873 22221 24555432 334444
Q ss_pred HHHhcCCCCCCccHHHHHHHHHHHHhcCCcEEEEEecC---------------------CCC-eEEEeecc-------cc
Q 038454 183 AMALKLSLTEDEDKVSRARRLLGKLKAKKKFVLILDDI---------------------DNH-TFCWGLRS-------MG 233 (359)
Q Consensus 183 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv---------------------~~g-~ilvTtr~-------~~ 233 (359)
...+... . ...+.+.+.. +..+|+|||+ ..| .|++||.. ..
T Consensus 176 ~~~~~~~-----~----~~~~~~~~~~-~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~ 245 (440)
T 2z4s_A 176 VDSMKEG-----K----LNEFREKYRK-KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQ 245 (440)
T ss_dssp HHHHHTT-----C----HHHHHHHHTT-TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCC
T ss_pred HHHHHcc-----c----HHHHHHHhcC-CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHH
Confidence 4444321 1 1223334443 5678999998 456 78888871 10
Q ss_pred ------e---eeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHHHHh------hcCC-CCh
Q 038454 234 ------C---EEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTVVGC------MRGV-DEI 297 (359)
Q Consensus 234 ------~---~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~------L~~~-~~~ 297 (359)
. ..+.+++++.++-.+++...+...+...++ +....|++.+.|.+-.+..+... +.+. -+.
T Consensus 246 ~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~---e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~~~It~ 322 (440)
T 2z4s_A 246 DRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPE---EVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDL 322 (440)
T ss_dssp HHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSSCCCH
T ss_pred HHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 1 357899999999999998876432222222 44677889999988655433222 1222 456
Q ss_pred hHHHHHHHHH
Q 038454 298 HEWRNALNEL 307 (359)
Q Consensus 298 ~~w~~~l~~~ 307 (359)
+.+..++...
T Consensus 323 ~~~~~~l~~~ 332 (440)
T 2z4s_A 323 KEAILLLKDF 332 (440)
T ss_dssp HHHHHHTSTT
T ss_pred HHHHHHHHHH
Confidence 6666666554
No 27
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.57 E-value=8.6e-07 Score=81.92 Aligned_cols=173 Identities=11% Similarity=0.092 Sum_probs=97.6
Q ss_pred cccccccchHHHHHHHHHHh-cCCCccEEEEEcCCCCcHHHHHHHHHcCcccc-cCC--Ccc------------------
Q 038454 106 TTTLVGENTKKIVKKVWEDL-MGDKVTKIGVWGMGGFGKTAIMRHINNRPQEE-TNE--FSD------------------ 163 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l-~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~~--F~~------------------ 163 (359)
-..++|.+. .+..+..++ ..+..+.+.|+|++|+||||+|+.+++.+... .+. ++.
T Consensus 13 ~~~~vg~~~--~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~ 90 (354)
T 1sxj_E 13 LNALSHNEE--LTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSS 90 (354)
T ss_dssp GGGCCSCHH--HHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEEC
T ss_pred HHHhcCCHH--HHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecc
Confidence 467899865 888888888 66655559999999999999999998852111 000 000
Q ss_pred --EEEEEeCCCc-CHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhcCCcEEEEEecC------------------CC
Q 038454 164 --VIWVTVSQPL-DLVKLQAEIAMALKLSLTEDEDKVSRARRLLGKLKAKKKFVLILDDI------------------DN 222 (359)
Q Consensus 164 --~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv------------------~~ 222 (359)
.+.+..+... ......+.++..+.....- .... .+ ..+.+ ++-++|||++ ..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~-~l-s~l~~-~~~vlilDE~~~L~~~~~~~L~~~le~~~~ 163 (354)
T 1sxj_E 91 PYHLEITPSDMGNNDRIVIQELLKEVAQMEQV----DFQD-SK-DGLAH-RYKCVIINEANSLTKDAQAALRRTMEKYSK 163 (354)
T ss_dssp SSEEEECCC----CCHHHHHHHHHHHTTTTC-------------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTT
T ss_pred cceEEecHhhcCCcchHHHHHHHHHHHHhccc----cccc-cc-cccCC-CCeEEEEeCccccCHHHHHHHHHHHHhhcC
Confidence 1111111100 0000122222222211100 0000 00 00223 6779999998 34
Q ss_pred C-eEEEeec---------ccceeeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHHHH
Q 038454 223 H-TFCWGLR---------SMGCEEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTVVG 289 (359)
Q Consensus 223 g-~ilvTtr---------~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~ 289 (359)
+ .+|++|. ...+..+.+.+++.++..+.+...+...+...+ ..+.+..|++.++|.+-.+..+..
T Consensus 164 ~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~l~~i~~~~~G~~r~a~~~l~ 238 (354)
T 1sxj_E 164 NIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLE--TKDILKRIAQASNGNLRVSLLMLE 238 (354)
T ss_dssp TEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEEC--CSHHHHHHHHHHTTCHHHHHHHHT
T ss_pred CCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCC--cHHHHHHHHHHcCCCHHHHHHHHH
Confidence 6 7777776 223467999999999999999887633222111 025678899999999876655543
No 28
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.56 E-value=1e-06 Score=85.92 Aligned_cols=166 Identities=13% Similarity=0.144 Sum_probs=98.0
Q ss_pred cccccccchHHHHHHHHHHhcC-----------------CCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEE
Q 038454 106 TTTLVGENTKKIVKKVWEDLMG-----------------DKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVT 168 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l~~-----------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~ 168 (359)
-..++|++. .++.+..|+.. +..+.+.|+|++|+||||+|+.+++.+ .+. ++.++
T Consensus 38 ~~dliG~~~--~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l-----~~~-~i~in 109 (516)
T 1sxj_A 38 LQQVCGNKG--SVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL-----GYD-ILEQN 109 (516)
T ss_dssp GGGCCSCHH--HHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT-----TCE-EEEEC
T ss_pred HHHhcCCHH--HHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc-----CCC-EEEEe
Confidence 367999966 88888888865 134789999999999999999999982 222 34455
Q ss_pred eCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHH-HhcCCcEEEEEecC-------------------CCC-eEEE
Q 038454 169 VSQPLDLVKLQAEIAMALKLSLTEDEDKVSRARRLLGK-LKAKKKFVLILDDI-------------------DNH-TFCW 227 (359)
Q Consensus 169 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~~k~~LlVlDdv-------------------~~g-~ilv 227 (359)
.+...... +....+........ ........... ....++.+|++|++ ..+ .||+
T Consensus 110 ~s~~~~~~-~~~~~i~~~~~~~~----~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~~~~iIl 184 (516)
T 1sxj_A 110 ASDVRSKT-LLNAGVKNALDNMS----VVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLIL 184 (516)
T ss_dssp TTSCCCHH-HHHHTGGGGTTBCC----STTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHCSSCEEE
T ss_pred CCCcchHH-HHHHHHHHHhcccc----HHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhcCCCEEE
Confidence 54443332 22222221111000 00000000000 11137889999999 123 4555
Q ss_pred eec----------ccceeeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCch-hHHHHH
Q 038454 228 GLR----------SMGCEEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQ-LAIFTV 287 (359)
Q Consensus 228 Ttr----------~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P-lai~~~ 287 (359)
++. ...+..+.+.+++.++..+.+...+...+...++ +....|++.++|.+ -++..+
T Consensus 185 i~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~---~~l~~la~~s~GdiR~~i~~L 252 (516)
T 1sxj_A 185 ICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDP---NVIDRLIQTTRGDIRQVINLL 252 (516)
T ss_dssp EESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHTTTCHHHHHHHH
T ss_pred EEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCcHHHHHHHH
Confidence 544 1123568999999999999988776433222222 34678899999954 455544
No 29
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.52 E-value=1.1e-06 Score=81.71 Aligned_cols=175 Identities=13% Similarity=0.104 Sum_probs=97.4
Q ss_pred cccccccch-HHHHHHHHHHhcCCCc--cEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEe----CCCcCHHHH
Q 038454 106 TTTLVGENT-KKIVKKVWEDLMGDKV--TKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTV----SQPLDLVKL 178 (359)
Q Consensus 106 ~~~~vGr~~-~~~~~~l~~~l~~~~~--~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~----~~~~~~~~~ 178 (359)
...++|++. .+.+..+...+..+.. +.+.|+|++|+|||+||+.+++.+ ..... .+.++. +......+.
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~-~~~~~~~~~~~~~~~~~~~ 118 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQAL---GPDTP-FTAIAGSEIFSLEMSKTEA 118 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHH---CSSCC-EEEEEGGGGSCSSSCHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHh---cccCC-cccccchhhhhcccchhHH
Confidence 457999976 2334456666666544 589999999999999999999883 22111 122221 122334444
Q ss_pred HHHHHHHhcC-C---------------------------CCC-----CccHHHHHHHHHHHH-hcCC----cEEEEEecC
Q 038454 179 QAEIAMALKL-S---------------------------LTE-----DEDKVSRARRLLGKL-KAKK----KFVLILDDI 220 (359)
Q Consensus 179 ~~~i~~~l~~-~---------------------------~~~-----~~~~~~~~~~l~~~l-~~~k----~~LlVlDdv 220 (359)
+...+..... . ... ............... ..++ +.+|+||++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi 198 (368)
T 3uk6_A 119 LTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEV 198 (368)
T ss_dssp HHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESG
T ss_pred HHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhc
Confidence 4444333110 0 000 011112222222211 1123 359999999
Q ss_pred -----------------CCC-eEEEeec---------------------ccceeeeecCCCChHHHHHHHHHhhcCCCCC
Q 038454 221 -----------------DNH-TFCWGLR---------------------SMGCEEVRVPPLSKEEALNLFLDKVGRNILH 261 (359)
Q Consensus 221 -----------------~~g-~ilvTtr---------------------~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~ 261 (359)
... .++++|. ...+..+.+++++.++..+++...+...+.
T Consensus 199 ~~l~~~~~~~L~~~le~~~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~~~- 277 (368)
T 3uk6_A 199 HMLDIESFSFLNRALESDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEEDV- 277 (368)
T ss_dssp GGSBHHHHHHHHHHTTCTTCCEEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHTTC-
T ss_pred cccChHHHHHHHHHhhCcCCCeeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHcCC-
Confidence 222 3333331 112345899999999999999987643222
Q ss_pred CCCchHHHHHHHHHHcC-CchhHHHHH
Q 038454 262 VPTLNEEIINSVVEECA-GLQLAIFTV 287 (359)
Q Consensus 262 ~~~~~~~~~~~i~~~c~-g~Plai~~~ 287 (359)
.-..+....|++.+. |.|-.+..+
T Consensus 278 --~~~~~~l~~l~~~~~~G~~r~~~~l 302 (368)
T 3uk6_A 278 --EMSEDAYTVLTRIGLETSLRYAIQL 302 (368)
T ss_dssp --CBCHHHHHHHHHHHHHSCHHHHHHH
T ss_pred --CCCHHHHHHHHHHhcCCCHHHHHHH
Confidence 223567788999997 777655443
No 30
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.48 E-value=6.4e-06 Score=75.55 Aligned_cols=171 Identities=13% Similarity=0.063 Sum_probs=94.2
Q ss_pred CcccccccchHHHHHHHHHHhc-----CCCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHH
Q 038454 105 PTTTLVGENTKKIVKKVWEDLM-----GDKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQ 179 (359)
Q Consensus 105 ~~~~~vGr~~~~~~~~l~~~l~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 179 (359)
.-..++|++. .+..+..++. ......|.|+|++|+|||+||+.+++. .... .+.++.........+
T Consensus 27 ~~~~iiG~~~--~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~---~~~~---~~~~~~~~~~~~~~~- 97 (338)
T 3pfi_A 27 NFDGYIGQES--IKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYE---MSAN---IKTTAAPMIEKSGDL- 97 (338)
T ss_dssp SGGGCCSCHH--HHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHH---TTCC---EEEEEGGGCCSHHHH-
T ss_pred CHHHhCChHH--HHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHH---hCCC---eEEecchhccchhHH-
Confidence 3467999976 6666666664 244567999999999999999999887 2222 233333322222222
Q ss_pred HHHHHHhcCCC----CC-CccHHHHHHHHHHHHhcCCcEEEEEecC---------CCC-eEEEeecc---------cce-
Q 038454 180 AEIAMALKLSL----TE-DEDKVSRARRLLGKLKAKKKFVLILDDI---------DNH-TFCWGLRS---------MGC- 234 (359)
Q Consensus 180 ~~i~~~l~~~~----~~-~~~~~~~~~~l~~~l~~~k~~LlVlDdv---------~~g-~ilvTtr~---------~~~- 234 (359)
..++....... ++ ..-.......+.+.+.. ..+.++..+- .++ .+|.+|.. ...
T Consensus 98 ~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~ 176 (338)
T 3pfi_A 98 AAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMED-YRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFG 176 (338)
T ss_dssp HHHHHTCCTTCEEEEETGGGCCHHHHHHHHHHHHT-SCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCS
T ss_pred HHHHHhccCCCEEEEechhhcCHHHHHHHHHHHHh-ccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhhcC
Confidence 22222211100 00 00112334444555554 4444443331 123 45555551 122
Q ss_pred eeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHHH
Q 038454 235 EEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTVV 288 (359)
Q Consensus 235 ~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~ 288 (359)
..+.+++++.++...++...+...+. .-..+....|++.+.|.|-.+..+.
T Consensus 177 ~~i~l~~~~~~e~~~il~~~~~~~~~---~~~~~~~~~l~~~~~G~~r~l~~~l 227 (338)
T 3pfi_A 177 MQFRLEFYKDSELALILQKAALKLNK---TCEEKAALEIAKRSRSTPRIALRLL 227 (338)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHTTC---EECHHHHHHHHHTTTTCHHHHHHHH
T ss_pred EEeeCCCcCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHHCcCHHHHHHHH
Confidence 46899999999999998877643221 1235667888889999996555443
No 31
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.42 E-value=7.4e-06 Score=74.71 Aligned_cols=153 Identities=18% Similarity=0.241 Sum_probs=92.0
Q ss_pred cccc-ccchHHHHHHHHHHhcCC--CccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHH
Q 038454 107 TTLV-GENTKKIVKKVWEDLMGD--KVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIA 183 (359)
Q Consensus 107 ~~~v-Gr~~~~~~~~l~~~l~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 183 (359)
++|+ |.........+..+...+ ....+.|+|++|+||||||+.+++.+.. ..+ .+++++. ..+...+.
T Consensus 11 ~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~--~~~-~~~~i~~------~~~~~~~~ 81 (324)
T 1l8q_A 11 ENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKK--RGY-RVIYSSA------DDFAQAMV 81 (324)
T ss_dssp SSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHH--TTC-CEEEEEH------HHHHHHHH
T ss_pred ccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHH--CCC-EEEEEEH------HHHHHHHH
Confidence 3455 655444455555555554 3567999999999999999999987311 122 2455543 23333443
Q ss_pred HHhcCCCCCCccHHHHHHHHHHHHhcCCcEEEEEecC---------------------CCC-eEEEeec-c---------
Q 038454 184 MALKLSLTEDEDKVSRARRLLGKLKAKKKFVLILDDI---------------------DNH-TFCWGLR-S--------- 231 (359)
Q Consensus 184 ~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv---------------------~~g-~ilvTtr-~--------- 231 (359)
..+... . ...+...+. +..+|+||++ ..| .+++||. .
T Consensus 82 ~~~~~~-----~----~~~~~~~~~--~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~ 150 (324)
T 1l8q_A 82 EHLKKG-----T----INEFRNMYK--SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSD 150 (324)
T ss_dssp HHHHHT-----C----HHHHHHHHH--TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCH
T ss_pred HHHHcC-----c----HHHHHHHhc--CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhh
Confidence 333211 1 112222232 4678999998 346 7777776 1
Q ss_pred -----cc-eeeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHH
Q 038454 232 -----MG-CEEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAI 284 (359)
Q Consensus 232 -----~~-~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai 284 (359)
.. ...+.+++ +.++..+++...+...+... ..+....|++.+ |.+-.+
T Consensus 151 ~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l---~~~~l~~l~~~~-g~~r~l 204 (324)
T 1l8q_A 151 RLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLEL---RKEVIDYLLENT-KNVREI 204 (324)
T ss_dssp HHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCC---CHHHHHHHHHHC-SSHHHH
T ss_pred HhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHhC-CCHHHH
Confidence 01 13588999 99999999988764322212 245677888888 766543
No 32
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.42 E-value=1.7e-05 Score=73.52 Aligned_cols=158 Identities=14% Similarity=0.176 Sum_probs=92.4
Q ss_pred cccccccchHHHHHHHHHHhc------------CCCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCc
Q 038454 106 TTTLVGENTKKIVKKVWEDLM------------GDKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPL 173 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~ 173 (359)
-..++|.+. .++.|.+.+. ....+.|.|+|++|+|||+||+.+++.. .. ..+.++.+.-.
T Consensus 83 ~~~i~G~~~--~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~---~~~~i~~~~l~ 154 (357)
T 3d8b_A 83 WEDIAGVEF--AKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS---GA---TFFSISASSLT 154 (357)
T ss_dssp GGGSCSCHH--HHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT---TC---EEEEEEGGGGC
T ss_pred HHHhCChHH--HHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc---CC---eEEEEehHHhh
Confidence 356899876 5556555542 1345789999999999999999999872 11 13344443211
Q ss_pred CHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhcCCcEEEEEecC---------------------------------
Q 038454 174 DLVKLQAEIAMALKLSLTEDEDKVSRARRLLGKLKAKKKFVLILDDI--------------------------------- 220 (359)
Q Consensus 174 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv--------------------------------- 220 (359)
. .. ..........+.......++.+|+||++
T Consensus 155 ~--------------~~--~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~ 218 (357)
T 3d8b_A 155 S--------------KW--VGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSS 218 (357)
T ss_dssp C--------------SS--TTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----C
T ss_pred c--------------cc--cchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccC
Confidence 1 00 0111222233333332236788888877
Q ss_pred CCC-eEEEeecc---------cce-eeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCC-chhHHHHHH
Q 038454 221 DNH-TFCWGLRS---------MGC-EEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAG-LQLAIFTVV 288 (359)
Q Consensus 221 ~~g-~ilvTtr~---------~~~-~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g-~Plai~~~~ 288 (359)
..+ .||.||.. ... ..+.+...+.++..+++...+...... -.......|++.+.| .|-.|..+.
T Consensus 219 ~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~---l~~~~l~~la~~t~G~s~~dl~~l~ 295 (357)
T 3d8b_A 219 EDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCC---LSEEEIEQIVQQSDAFSGADMTQLC 295 (357)
T ss_dssp CCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBC---CCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCC---ccHHHHHHHHHHcCCCCHHHHHHHH
Confidence 113 45556651 112 357888889999888888776332221 124567888999988 555666554
Q ss_pred Hh
Q 038454 289 GC 290 (359)
Q Consensus 289 ~~ 290 (359)
..
T Consensus 296 ~~ 297 (357)
T 3d8b_A 296 RE 297 (357)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 33
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.41 E-value=2e-05 Score=71.82 Aligned_cols=157 Identities=13% Similarity=0.182 Sum_probs=89.5
Q ss_pred ccccccchHHHHHHHHHHhc------------CCCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcC
Q 038454 107 TTLVGENTKKIVKKVWEDLM------------GDKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLD 174 (359)
Q Consensus 107 ~~~vGr~~~~~~~~l~~~l~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~ 174 (359)
..++|.+. .++.|.+.+. ....+-|.++|++|+|||+||+.+++.. ... ..+.++.+.-.
T Consensus 12 ~di~G~~~--~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~--~~~---~~~~i~~~~l~- 83 (322)
T 1xwi_A 12 SDVAGLEG--AKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA--NNS---TFFSISSSDLV- 83 (322)
T ss_dssp GGSCSCHH--HHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHT--TSC---EEEEEECCSSC-
T ss_pred HHhcCHHH--HHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHc--CCC---cEEEEEhHHHH-
Confidence 56888866 4444443331 1234679999999999999999999872 011 12333333211
Q ss_pred HHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhcCCcEEEEEecC--------------------------------CC
Q 038454 175 LVKLQAEIAMALKLSLTEDEDKVSRARRLLGKLKAKKKFVLILDDI--------------------------------DN 222 (359)
Q Consensus 175 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv--------------------------------~~ 222 (359)
.... ... ......+.......++.+|+||++ ..
T Consensus 84 -------------~~~~-g~~-~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~ 148 (322)
T 1xwi_A 84 -------------SKWL-GES-EKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDND 148 (322)
T ss_dssp -------------CSSC-CSC-HHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCT
T ss_pred -------------hhhh-hHH-HHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCC
Confidence 1100 111 223333333333337788999988 12
Q ss_pred C-eEEEeecc---------cce-eeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCc-hhHHHHHHH
Q 038454 223 H-TFCWGLRS---------MGC-EEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGL-QLAIFTVVG 289 (359)
Q Consensus 223 g-~ilvTtr~---------~~~-~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~-Plai~~~~~ 289 (359)
+ .||.||.. ... ..+.++..+.++-.++|...+....... .......|++.+.|. +-.|..+..
T Consensus 149 ~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l---~~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 149 GILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSL---TEADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp TEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCC---CHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred CEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCC---CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 2 34445551 122 3578888889988899888764322111 245667889999887 444555443
No 34
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.41 E-value=2.9e-05 Score=68.22 Aligned_cols=158 Identities=15% Similarity=0.161 Sum_probs=89.5
Q ss_pred ccccccch-HHHHHHHHHHhcC---------CCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHH
Q 038454 107 TTLVGENT-KKIVKKVWEDLMG---------DKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLV 176 (359)
Q Consensus 107 ~~~vGr~~-~~~~~~l~~~l~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~ 176 (359)
..++|.+. .+.+.+++.++.. ...+.+.|+|++|+|||++|+.+++. .... .+.++.+.-.+
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~---~~~~---~~~~~~~~~~~-- 77 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE---AQVP---FLAMAGAEFVE-- 77 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHH---HTCC---EEEEETTTTSS--
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHH---hCCC---EEEechHHHHh--
Confidence 56888876 3344445555433 23456899999999999999999987 2222 33444333111
Q ss_pred HHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhcCCcEEEEEecC-----------------------------------C
Q 038454 177 KLQAEIAMALKLSLTEDEDKVSRARRLLGKLKAKKKFVLILDDI-----------------------------------D 221 (359)
Q Consensus 177 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv-----------------------------------~ 221 (359)
. ... ........+........+.+|+||++ .
T Consensus 78 ------------~-~~~-~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 143 (262)
T 2qz4_A 78 ------------V-IGG-LGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTT 143 (262)
T ss_dssp ------------S-STT-HHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTT
T ss_pred ------------h-ccC-hhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCC
Confidence 0 001 11122222222222225788888888 0
Q ss_pred CC-eEEEeec----------cc-ce-eeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchh-HHHHH
Q 038454 222 NH-TFCWGLR----------SM-GC-EEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQL-AIFTV 287 (359)
Q Consensus 222 ~g-~ilvTtr----------~~-~~-~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pl-ai~~~ 287 (359)
.+ .++.||. .. .. ..+.+++.+.++-.+++...+..... ..........+++.+.|.+- .|..+
T Consensus 144 ~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~--~~~~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 144 DHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKL--TQSSTFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp CCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTC--CBTHHHHHHHHHHTCTTCCHHHHHHH
T ss_pred CCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCC--CcchhhHHHHHHHHCCCCCHHHHHHH
Confidence 13 4555664 11 12 45788999999999998887633221 12222234778888888754 45444
Q ss_pred H
Q 038454 288 V 288 (359)
Q Consensus 288 ~ 288 (359)
.
T Consensus 222 ~ 222 (262)
T 2qz4_A 222 C 222 (262)
T ss_dssp H
T ss_pred H
Confidence 3
No 35
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.41 E-value=8.5e-06 Score=74.77 Aligned_cols=145 Identities=13% Similarity=0.141 Sum_probs=89.0
Q ss_pred HHHHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHcCccccc-------------------CCCccEEEEEeC---CC
Q 038454 116 KIVKKVWEDLMGDK-VTKIGVWGMGGFGKTAIMRHINNRPQEET-------------------NEFSDVIWVTVS---QP 172 (359)
Q Consensus 116 ~~~~~l~~~l~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~~F~~~~wv~~~---~~ 172 (359)
+....+...+.+++ ...+.++|++|+|||++|+.+++.+.... .+++ ..++... ..
T Consensus 9 ~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~~~~~ 87 (334)
T 1a5t_A 9 PDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAPEKGKNT 87 (334)
T ss_dssp HHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECCCTTCSS
T ss_pred HHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccccCCC
Confidence 35667777777765 45799999999999999999988631110 0122 2333221 11
Q ss_pred cCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhcCCcEEEEEecC------------------CCC-eEEEeec---
Q 038454 173 LDLVKLQAEIAMALKLSLTEDEDKVSRARRLLGKLKAKKKFVLILDDI------------------DNH-TFCWGLR--- 230 (359)
Q Consensus 173 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv------------------~~g-~ilvTtr--- 230 (359)
..... .+.+...+.... ..+ ++-++|+|++ .++ .+|++|.
T Consensus 88 ~~i~~-ir~l~~~~~~~~----------------~~~-~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~ 149 (334)
T 1a5t_A 88 LGVDA-VREVTEKLNEHA----------------RLG-GAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPE 149 (334)
T ss_dssp BCHHH-HHHHHHHTTSCC----------------TTS-SCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGG
T ss_pred CCHHH-HHHHHHHHhhcc----------------ccC-CcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChH
Confidence 12211 122222222110 012 6778889998 234 5555555
Q ss_pred ------ccceeeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHH
Q 038454 231 ------SMGCEEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTV 287 (359)
Q Consensus 231 ------~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 287 (359)
...+..+.+.+++.++..+.+.... .-..+.+..+++.++|.|..+..+
T Consensus 150 ~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~--------~~~~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 150 RLLATLRSRCRLHYLAPPPEQYAVTWLSREV--------TMSQDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp GSCHHHHTTSEEEECCCCCHHHHHHHHHHHC--------CCCHHHHHHHHHHTTTCHHHHHHT
T ss_pred hCcHHHhhcceeeeCCCCCHHHHHHHHHHhc--------CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 2345679999999999999988774 112355678999999999776544
No 36
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.40 E-value=5.6e-07 Score=74.70 Aligned_cols=46 Identities=22% Similarity=0.312 Sum_probs=40.7
Q ss_pred cccccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 106 TTTLVGENTKKIVKKVWEDLMGDKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
...++|++. ++..+...+.....+.+.|+|++|+|||+||+.+++.
T Consensus 21 ~~~~~g~~~--~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 21 LDPVIGRDT--EIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCCCCSCHH--HHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred cchhhcchH--HHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHH
Confidence 457899976 8999999998877778899999999999999999887
No 37
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.39 E-value=8.1e-06 Score=75.05 Aligned_cols=157 Identities=17% Similarity=0.237 Sum_probs=94.3
Q ss_pred ccccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCc-cEEEEEeCCCcCHHHHHHHHHHH
Q 038454 107 TTLVGENTKKIVKKVWEDLMGDKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFS-DVIWVTVSQPLDLVKLQAEIAMA 185 (359)
Q Consensus 107 ~~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~-~~~wv~~~~~~~~~~~~~~i~~~ 185 (359)
..++|.+. .+..|..++..++.+.+.++|++|+||||+|+.+++.+ ....+. .+..++.+.......+. .++..
T Consensus 25 ~~~~g~~~--~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l--~~~~~~~~~~~~~~~~~~~~~~ir-~~i~~ 99 (340)
T 1sxj_C 25 DEVYGQNE--VITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI--YGKNYSNMVLELNASDDRGIDVVR-NQIKD 99 (340)
T ss_dssp GGCCSCHH--HHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHH--HTTSHHHHEEEECTTSCCSHHHHH-THHHH
T ss_pred HHhcCcHH--HHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH--cCCCccceEEEEcCcccccHHHHH-HHHHH
Confidence 56788754 78888888888776669999999999999999999873 112221 12233333222222221 11111
Q ss_pred hcCCCCCCccHHHHHHHHHHHHhcCCcEEEEEecC------------------CCC-eEEEeec---------ccceeee
Q 038454 186 LKLSLTEDEDKVSRARRLLGKLKAKKKFVLILDDI------------------DNH-TFCWGLR---------SMGCEEV 237 (359)
Q Consensus 186 l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv------------------~~g-~ilvTtr---------~~~~~~~ 237 (359)
+..... .+.+ .+-++|+|++ ... .++++|. ...+..+
T Consensus 100 ~~~~~~--------------~~~~-~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~ 164 (340)
T 1sxj_C 100 FASTRQ--------------IFSK-GFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRF 164 (340)
T ss_dssp HHHBCC--------------SSSC-SCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred HHhhcc--------------cCCC-CceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeE
Confidence 110000 0012 4678888887 234 6666655 1234578
Q ss_pred ecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHH
Q 038454 238 RVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFT 286 (359)
Q Consensus 238 ~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~ 286 (359)
.+.+++.++..+.+...+-..+. .-..+..+.+++.++|.+--+..
T Consensus 165 ~~~~l~~~~~~~~l~~~~~~~~~---~i~~~~~~~i~~~s~G~~r~~~~ 210 (340)
T 1sxj_C 165 RFQPLPQEAIERRIANVLVHEKL---KLSPNAEKALIELSNGDMRRVLN 210 (340)
T ss_dssp ECCCCCHHHHHHHHHHHHHTTTC---CBCHHHHHHHHHHHTTCHHHHHH
T ss_pred eccCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHH
Confidence 99999999998888776532221 11245677889999998875443
No 38
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.38 E-value=7.2e-06 Score=74.75 Aligned_cols=154 Identities=9% Similarity=0.104 Sum_probs=91.7
Q ss_pred cccccccchHHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHH
Q 038454 106 TTTLVGENTKKIVKKVWEDLMGDKV-TKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAM 184 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 184 (359)
-..++|.+. .+..+..++..+.. .++.+.|++|+|||++|+.+++.+ . ...+.++.+.. ... .++.++.
T Consensus 25 ~~~ivg~~~--~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l---~---~~~~~i~~~~~-~~~-~i~~~~~ 94 (324)
T 3u61_B 25 IDECILPAF--DKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV---N---ADMMFVNGSDC-KID-FVRGPLT 94 (324)
T ss_dssp TTTSCCCHH--HHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT---T---EEEEEEETTTC-CHH-HHHTHHH
T ss_pred HHHHhCcHH--HHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh---C---CCEEEEccccc-CHH-HHHHHHH
Confidence 357899966 88888888887654 567778889999999999999882 1 12445554332 222 2222222
Q ss_pred HhcCCCCCCccHHHHHHHHHHHHhcCCcEEEEEecC-------------------CCC-eEEEeec---------cccee
Q 038454 185 ALKLSLTEDEDKVSRARRLLGKLKAKKKFVLILDDI-------------------DNH-TFCWGLR---------SMGCE 235 (359)
Q Consensus 185 ~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv-------------------~~g-~ilvTtr---------~~~~~ 235 (359)
......+ .. +++.+|++|++ ..+ .+|+||. ...+.
T Consensus 95 ~~~~~~~---------------~~-~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~ 158 (324)
T 3u61_B 95 NFASAAS---------------FD-GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCR 158 (324)
T ss_dssp HHHHBCC---------------CS-SCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSE
T ss_pred HHHhhcc---------------cC-CCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCc
Confidence 1111000 01 16778889998 234 7777776 11235
Q ss_pred eeecCCCChHHHHHH-------HHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHH
Q 038454 236 EVRVPPLSKEEALNL-------FLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTV 287 (359)
Q Consensus 236 ~~~l~~L~~~ea~~l-------f~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 287 (359)
.+.+++++.++-.++ +...+...+...++ .+....|++.++|.+-.+...
T Consensus 159 ~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~--~~~~~~l~~~~~gd~R~a~~~ 215 (324)
T 3u61_B 159 VITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIAD--MKVVAALVKKNFPDFRKTIGE 215 (324)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSC--HHHHHHHHHHTCSCTTHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCc--HHHHHHHHHhCCCCHHHHHHH
Confidence 689999998874333 22222211111111 266788999998877654433
No 39
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.34 E-value=5.3e-05 Score=67.98 Aligned_cols=156 Identities=12% Similarity=0.156 Sum_probs=90.3
Q ss_pred cccccccchHHHHHHHHHHhcC------------CCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCc
Q 038454 106 TTTLVGENTKKIVKKVWEDLMG------------DKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPL 173 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~ 173 (359)
-..++|.+. .++.+...+.. ...+.+.|+|++|+|||+||+.+++.. ... .+.++.+.-.
T Consensus 20 ~~~i~G~~~--~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~---~~~---~~~i~~~~l~ 91 (297)
T 3b9p_A 20 WTDIAGQDV--AKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC---SAT---FLNISAASLT 91 (297)
T ss_dssp GGGSCCCHH--HHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT---TCE---EEEEESTTTS
T ss_pred HHHhCChHH--HHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh---CCC---eEEeeHHHHh
Confidence 457899876 66666655421 235689999999999999999999872 211 2334433211
Q ss_pred CHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhcCCcEEEEEecC---------------------------------
Q 038454 174 DLVKLQAEIAMALKLSLTEDEDKVSRARRLLGKLKAKKKFVLILDDI--------------------------------- 220 (359)
Q Consensus 174 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv--------------------------------- 220 (359)
... ..........+........+.+|+||++
T Consensus 92 --------------~~~--~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 155 (297)
T 3b9p_A 92 --------------SKY--VGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNP 155 (297)
T ss_dssp --------------SSS--CSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC---
T ss_pred --------------hcc--cchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccC
Confidence 010 1112223333333332236788889987
Q ss_pred -CCC-eEEEeecc---c------ce-eeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchh-HHHHH
Q 038454 221 -DNH-TFCWGLRS---M------GC-EEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQL-AIFTV 287 (359)
Q Consensus 221 -~~g-~ilvTtr~---~------~~-~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pl-ai~~~ 287 (359)
..+ .|+.||.. . .. ..+.++..+.++...++...+..... .-.......+++.+.|.+- .+..+
T Consensus 156 ~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~---~~~~~~~~~la~~~~g~~~~~l~~l 232 (297)
T 3b9p_A 156 DGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGS---PLDTEALRRLAKITDGYSGSDLTAL 232 (297)
T ss_dssp ---CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSC---CSCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 023 45556651 1 11 34677777888888887776533221 1124566788999999875 55444
Q ss_pred H
Q 038454 288 V 288 (359)
Q Consensus 288 ~ 288 (359)
.
T Consensus 233 ~ 233 (297)
T 3b9p_A 233 A 233 (297)
T ss_dssp H
T ss_pred H
Confidence 4
No 40
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.33 E-value=1.1e-05 Score=73.48 Aligned_cols=156 Identities=15% Similarity=0.191 Sum_probs=92.3
Q ss_pred cccccccchHHHHHHHHHHhc----------C--CCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCc
Q 038454 106 TTTLVGENTKKIVKKVWEDLM----------G--DKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPL 173 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l~----------~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~ 173 (359)
-..++|.+. .++.|...+. . ...+-+.++|++|+|||+||+.+++. .... .+.++.
T Consensus 17 ~~di~G~~~--~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~---~~~~---~~~v~~---- 84 (322)
T 3eie_A 17 WEDVAGLEG--AKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE---ANST---FFSVSS---- 84 (322)
T ss_dssp GGGSCSCHH--HHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHH---HTCE---EEEEEH----
T ss_pred HHHhcChHH--HHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH---HCCC---EEEEch----
Confidence 356889866 6666665551 1 12457999999999999999999987 2222 222322
Q ss_pred CHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhcCCcEEEEEecC--------------------------------C
Q 038454 174 DLVKLQAEIAMALKLSLTEDEDKVSRARRLLGKLKAKKKFVLILDDI--------------------------------D 221 (359)
Q Consensus 174 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv--------------------------------~ 221 (359)
..+ .... ..........+.......++.+|+||++ .
T Consensus 85 --~~l--------~~~~--~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 152 (322)
T 3eie_A 85 --SDL--------VSKW--MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDS 152 (322)
T ss_dssp --HHH--------HTTT--GGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSC
T ss_pred --HHH--------hhcc--cchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccC
Confidence 111 1110 1122333444444443336789999998 1
Q ss_pred CC-eEEEeecc---c------ce-eeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCC-chhHHHHHH
Q 038454 222 NH-TFCWGLRS---M------GC-EEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAG-LQLAIFTVV 288 (359)
Q Consensus 222 ~g-~ilvTtr~---~------~~-~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g-~Plai~~~~ 288 (359)
.+ .||.||.. . .. ..+.++..+.++-.++|...+..... .........|++.+.| .+-.|..+.
T Consensus 153 ~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~---~~~~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 153 QGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPC---VLTKEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp CCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCC---CCCHHHHHHHHHTTTTCCHHHHHHHH
T ss_pred CceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCC---CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 23 45556651 1 11 35788889999999999887644322 1123456788888887 454554444
No 41
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.30 E-value=3.3e-05 Score=68.50 Aligned_cols=46 Identities=15% Similarity=0.141 Sum_probs=33.6
Q ss_pred cccccccchHHHHHH-------HHHHhc---CCCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 106 TTTLVGENTKKIVKK-------VWEDLM---GDKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~-------l~~~l~---~~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
...++|.+. .++. +...+. ......+.|+|++|+|||+||+.+++.
T Consensus 32 ~~~~i~~~~--~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 32 MNGIIKWGD--PVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp TTCCCCCSH--HHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred hcCCCCccH--HHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 346788765 3333 333443 455678999999999999999999987
No 42
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.28 E-value=1.8e-05 Score=73.27 Aligned_cols=156 Identities=15% Similarity=0.162 Sum_probs=89.4
Q ss_pred cccccccchHHHHHHHHHHhc----C--------CCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCc
Q 038454 106 TTTLVGENTKKIVKKVWEDLM----G--------DKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPL 173 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l~----~--------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~ 173 (359)
-..++|.+. .++.|...+. . ...+-|.|+|++|+|||+||+.+++.+ ... .+.++.+
T Consensus 50 ~~di~G~~~--~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~---~~~---~~~v~~~--- 118 (355)
T 2qp9_X 50 WEDVAGLEG--AKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NST---FFSVSSS--- 118 (355)
T ss_dssp GGGSCCGGG--HHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH---TCE---EEEEEHH---
T ss_pred HHHhCCHHH--HHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCC---EEEeeHH---
Confidence 356899877 5556655541 1 123468999999999999999999982 222 2223221
Q ss_pred CHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhcCCcEEEEEecC--------------------------------C
Q 038454 174 DLVKLQAEIAMALKLSLTEDEDKVSRARRLLGKLKAKKKFVLILDDI--------------------------------D 221 (359)
Q Consensus 174 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv--------------------------------~ 221 (359)
++. .... ... ......+.......++.+|+||++ .
T Consensus 119 ---~l~--------~~~~-g~~-~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~ 185 (355)
T 2qp9_X 119 ---DLV--------SKWM-GES-EKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDS 185 (355)
T ss_dssp ---HHH--------SCC----C-HHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---
T ss_pred ---HHh--------hhhc-chH-HHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccC
Confidence 111 1100 111 222333333333237789999988 1
Q ss_pred CC-eEEEeeccc---------ce-eeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCC-chhHHHHHH
Q 038454 222 NH-TFCWGLRSM---------GC-EEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAG-LQLAIFTVV 288 (359)
Q Consensus 222 ~g-~ilvTtr~~---------~~-~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g-~Plai~~~~ 288 (359)
.+ .||.||... .. ..+.++..+.++-.++|...+....... .......|++.+.| .|-.|..+.
T Consensus 186 ~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~---~~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 186 QGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVL---TKEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCC---CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCC---CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 23 445566511 12 3578888999999999888764332211 24456788899988 454454443
No 43
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.27 E-value=7.6e-05 Score=69.86 Aligned_cols=157 Identities=12% Similarity=0.168 Sum_probs=91.2
Q ss_pred cccccccchHHHHHHHHHHhc------------CCCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCc
Q 038454 106 TTTLVGENTKKIVKKVWEDLM------------GDKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPL 173 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~ 173 (359)
-..++|.+. .++.|..++. ....+.|.|+|++|+|||+||+.+++.. ... .+.++.+.-.
T Consensus 114 ~~~iiG~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~---~~~---~~~v~~~~l~ 185 (389)
T 3vfd_A 114 FDDIAGQDL--AKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES---NAT---FFNISAASLT 185 (389)
T ss_dssp GGGSCSCHH--HHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT---TCE---EEEECSCCC-
T ss_pred hHHhCCHHH--HHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh---cCc---EEEeeHHHhh
Confidence 467999976 6666666651 1234689999999999999999998872 111 2333332211
Q ss_pred CHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhcCCcEEEEEecC--------------------------------C
Q 038454 174 DLVKLQAEIAMALKLSLTEDEDKVSRARRLLGKLKAKKKFVLILDDI--------------------------------D 221 (359)
Q Consensus 174 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv--------------------------------~ 221 (359)
+ .. . ... ......+..........+|+||++ .
T Consensus 186 ~--~~-------~------g~~-~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 249 (389)
T 3vfd_A 186 S--KY-------V------GEG-EKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAG 249 (389)
T ss_dssp ---------------------C-HHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC---
T ss_pred c--cc-------c------chH-HHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccC
Confidence 1 00 0 011 122223333332226678889998 0
Q ss_pred CC--eEEEeec---------ccce-eeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchh-HHHHHH
Q 038454 222 NH--TFCWGLR---------SMGC-EEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQL-AIFTVV 288 (359)
Q Consensus 222 ~g--~ilvTtr---------~~~~-~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pl-ai~~~~ 288 (359)
+. .||.||. .... ..+.+...+.++-.+++...+..... .-.......|++.+.|..- +|..+.
T Consensus 250 ~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~---~l~~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 250 DDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGS---PLTQKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp --CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCC---CSCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 22 3455555 1122 35788899999999998887644322 1224567789999988544 555554
Q ss_pred H
Q 038454 289 G 289 (359)
Q Consensus 289 ~ 289 (359)
.
T Consensus 327 ~ 327 (389)
T 3vfd_A 327 K 327 (389)
T ss_dssp H
T ss_pred H
Confidence 3
No 44
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.21 E-value=1.4e-05 Score=74.45 Aligned_cols=176 Identities=17% Similarity=0.208 Sum_probs=95.3
Q ss_pred ccccccch-HHHHHHHHHH-hcC---------CCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCH
Q 038454 107 TTLVGENT-KKIVKKVWED-LMG---------DKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDL 175 (359)
Q Consensus 107 ~~~vGr~~-~~~~~~l~~~-l~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~ 175 (359)
..+.|-+. .+++.+.+.+ +.. ..++=|.++|++|+|||.||+++++. .... .+.++.+.-.
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e---~~~~---f~~v~~s~l~-- 219 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHH---TDCK---FIRVSGAELV-- 219 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHH---HTCE---EEEEEGGGGS--
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHh---hCCC---ceEEEhHHhh--
Confidence 35667655 3444444444 222 23567999999999999999999998 2222 2334333211
Q ss_pred HHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhcCCcEEEEEecC----------------------------------C
Q 038454 176 VKLQAEIAMALKLSLTEDEDKVSRARRLLGKLKAKKKFVLILDDI----------------------------------D 221 (359)
Q Consensus 176 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv----------------------------------~ 221 (359)
... ....+..++.+...-+...+++|++|++ .
T Consensus 220 ------------sk~--vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~ 285 (405)
T 4b4t_J 220 ------------QKY--IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETS 285 (405)
T ss_dssp ------------CSS--TTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCC
T ss_pred ------------ccc--cchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCC
Confidence 111 1122233333333333336777777777 2
Q ss_pred CC-eEEEeec----------ccce--eeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhH-HHHH
Q 038454 222 NH-TFCWGLR----------SMGC--EEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLA-IFTV 287 (359)
Q Consensus 222 ~g-~ilvTtr----------~~~~--~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pla-i~~~ 287 (359)
.+ .||.||. +.+- ..+.++..+.++-.++|..+.-.-......+ ...|++.+.|.--| |..+
T Consensus 286 ~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvd----l~~lA~~t~G~SGADi~~l 361 (405)
T 4b4t_J 286 KNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGIN----LRKVAEKMNGCSGADVKGV 361 (405)
T ss_dssp CCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCC----HHHHHHHCCSCCHHHHHHH
T ss_pred CCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHCCCCCHHHHHHH
Confidence 34 5666776 1222 3588888888888888887653322212222 35577777775422 2222
Q ss_pred ---HH--hhcCC---CChhHHHHHHHHHh
Q 038454 288 ---VG--CMRGV---DEIHEWRNALNELR 308 (359)
Q Consensus 288 ---~~--~L~~~---~~~~~w~~~l~~~~ 308 (359)
|+ .++.+ -+.+.+..++++..
T Consensus 362 ~~eA~~~Air~~~~~vt~~Df~~Al~~v~ 390 (405)
T 4b4t_J 362 CTEAGMYALRERRIHVTQEDFELAVGKVM 390 (405)
T ss_dssp HHHHHHHHHHTTCSBCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcCHHHHHHHHHHHh
Confidence 11 12332 34566766666544
No 45
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.20 E-value=5.4e-06 Score=70.09 Aligned_cols=60 Identities=18% Similarity=0.138 Sum_probs=39.1
Q ss_pred ccccccch--HHHHHHHHHHhcCC----CccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEe
Q 038454 107 TTLVGENT--KKIVKKVWEDLMGD----KVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTV 169 (359)
Q Consensus 107 ~~~vGr~~--~~~~~~l~~~l~~~----~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~ 169 (359)
.+|++.+. ...++.+..++... ....+.|+|++|+|||+||+.+++.. ......++|+++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~---~~~~~~~~~~~~ 90 (202)
T 2w58_A 25 SDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANEL---AKRNVSSLIVYV 90 (202)
T ss_dssp TSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHH---HTTTCCEEEEEH
T ss_pred hhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHH---HHcCCeEEEEEh
Confidence 45666542 33455556665433 22789999999999999999999883 222334566654
No 46
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.18 E-value=1.5e-05 Score=76.60 Aligned_cols=128 Identities=15% Similarity=0.236 Sum_probs=77.6
Q ss_pred ccccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHcCccccc--CCCcc--EEEEEeCCCcCHHHHHHHH
Q 038454 107 TTLVGENTKKIVKKVWEDLMGDKVTKIGVWGMGGFGKTAIMRHINNRPQEET--NEFSD--VIWVTVSQPLDLVKLQAEI 182 (359)
Q Consensus 107 ~~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~~F~~--~~wv~~~~~~~~~~~~~~i 182 (359)
++++|++. ++..+...+......-+.++|++|+|||+||+.+++.+.... ..... ++.++.+
T Consensus 180 d~iiGr~~--~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~------------ 245 (468)
T 3pxg_A 180 DPVIGRSK--EIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG------------ 245 (468)
T ss_dssp CCCCCCHH--HHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------
T ss_pred CCccCcHH--HHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC------------
Confidence 46999976 899999999776667789999999999999999998731100 01111 2222222
Q ss_pred HHHhcCCCCCCccHHHHHHHHHHHHhcCCcEEEEEecC-----------CCC--eEEEeec-c-------------ccee
Q 038454 183 AMALKLSLTEDEDKVSRARRLLGKLKAKKKFVLILDDI-----------DNH--TFCWGLR-S-------------MGCE 235 (359)
Q Consensus 183 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv-----------~~g--~ilvTtr-~-------------~~~~ 235 (359)
..... ........+...+...++.+|++|.- ..| .+|.+|. . ..+.
T Consensus 246 -~~~~g------~~e~~~~~~~~~~~~~~~~iLfiD~~~~a~~~L~~~L~~g~v~vI~at~~~e~~~~~~~~~al~~Rf~ 318 (468)
T 3pxg_A 246 -TKYRG------EFEDRLKKVMDEIRQAGNIILFIDAAIDASNILKPSLARGELQCIGATTLDEYRKYIEKDAALERRFQ 318 (468)
T ss_dssp --------------CTTHHHHHHHHHTCCCCEEEECC--------CCCTTSSSCEEEEECCTTTTHHHHTTCSHHHHSEE
T ss_pred -ccccc------hHHHHHHHHHHHHHhcCCeEEEEeCchhHHHHHHHhhcCCCEEEEecCCHHHHHHHhhcCHHHHHhCc
Confidence 00000 00111222333333336788889832 344 5666555 1 1234
Q ss_pred eeecCCCChHHHHHHHHHhh
Q 038454 236 EVRVPPLSKEEALNLFLDKV 255 (359)
Q Consensus 236 ~~~l~~L~~~ea~~lf~~~~ 255 (359)
.+.+++.+.++..+++...+
T Consensus 319 ~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 319 PIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp EEECCCCCHHHHHHHHHHTT
T ss_pred cceeCCCCHHHHHHHHHHHH
Confidence 68999999999999998765
No 47
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.17 E-value=1.3e-05 Score=72.47 Aligned_cols=26 Identities=19% Similarity=0.252 Sum_probs=22.6
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 128 DKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 128 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.....+.|+|++|+|||+||+.+++.
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34557999999999999999988887
No 48
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.17 E-value=4.7e-05 Score=72.61 Aligned_cols=157 Identities=14% Similarity=0.197 Sum_probs=87.8
Q ss_pred cccccccchHHHHHHHHHHhc------------CCCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCc
Q 038454 106 TTTLVGENTKKIVKKVWEDLM------------GDKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPL 173 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~ 173 (359)
-..++|.+. .+..|...+. ....+-|.++|++|+|||+||+.+++.+ . ..-++.++...
T Consensus 133 ~~di~G~~~--~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~---~----~~~~~~v~~~~ 203 (444)
T 2zan_A 133 WSDVAGLEG--AKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA---N----NSTFFSISSSD 203 (444)
T ss_dssp GGGSCSCHH--HHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC---C----SSEEEEECCC-
T ss_pred HHHhcCHHH--HHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc---C----CCCEEEEeHHH
Confidence 356888866 5566655441 1234679999999999999999999872 1 11233333221
Q ss_pred CHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhcCCcEEEEEecC--------------------------------C
Q 038454 174 DLVKLQAEIAMALKLSLTEDEDKVSRARRLLGKLKAKKKFVLILDDI--------------------------------D 221 (359)
Q Consensus 174 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv--------------------------------~ 221 (359)
+... ..+.. ... ...+........+.+|+||++ .
T Consensus 204 ----l~~~---~~g~~---~~~----~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~ 269 (444)
T 2zan_A 204 ----LVSK---WLGES---EKL----VKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDN 269 (444)
T ss_dssp ---------------C---CCT----HHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCC
T ss_pred ----HHhh---hcchH---HHH----HHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCC
Confidence 1100 01110 111 222222222237789999998 1
Q ss_pred CC-eEEEeecc---------cce-eeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCc-hhHHHHHH
Q 038454 222 NH-TFCWGLRS---------MGC-EEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGL-QLAIFTVV 288 (359)
Q Consensus 222 ~g-~ilvTtr~---------~~~-~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~-Plai~~~~ 288 (359)
.+ .||.||.. ... ..+.++..+.++-..+|...+....... .......|++.+.|. +-.|..+.
T Consensus 270 ~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l---~~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 270 DGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSL---TEADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp SSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEEC---CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCC---CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 12 45556651 122 3577888888888888887764322111 235567888899884 44554443
No 49
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.15 E-value=4.8e-06 Score=69.14 Aligned_cols=87 Identities=16% Similarity=0.179 Sum_probs=50.2
Q ss_pred HHHHHHHHHHhcC---CCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHHHhcCCCC
Q 038454 115 KKIVKKVWEDLMG---DKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAMALKLSLT 191 (359)
Q Consensus 115 ~~~~~~l~~~l~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 191 (359)
+..++.+..+..+ .....+.|+|++|+||||||+.+++.+ .....+. ++++ +..++...+.........
T Consensus 20 ~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~-~~~~g~~-~~~~------~~~~~~~~~~~~~~~~~~ 91 (180)
T 3ec2_A 20 NRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAI-YEKKGIR-GYFF------DTKDLIFRLKHLMDEGKD 91 (180)
T ss_dssp HHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHH-HHHSCCC-CCEE------EHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHH-HHHcCCe-EEEE------EHHHHHHHHHHHhcCchH
Confidence 3345555555543 335789999999999999999999873 1122222 2333 344555555444432211
Q ss_pred CCccHHHHHHHHHHHHhcCCcEEEEEecC
Q 038454 192 EDEDKVSRARRLLGKLKAKKKFVLILDDI 220 (359)
Q Consensus 192 ~~~~~~~~~~~l~~~l~~~k~~LlVlDdv 220 (359)
. .+.+.+. +.-+||||++
T Consensus 92 --~-------~~~~~~~--~~~llilDE~ 109 (180)
T 3ec2_A 92 --T-------KFLKTVL--NSPVLVLDDL 109 (180)
T ss_dssp --S-------HHHHHHH--TCSEEEEETC
T ss_pred --H-------HHHHHhc--CCCEEEEeCC
Confidence 1 2222333 4568899998
No 50
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.15 E-value=3.1e-06 Score=67.83 Aligned_cols=44 Identities=16% Similarity=0.304 Sum_probs=31.8
Q ss_pred cccccchHHHHHHHHHHhc--CCCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 108 TLVGENTKKIVKKVWEDLM--GDKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 108 ~~vGr~~~~~~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.++|++. .+.++.+.+. ......|.|+|.+|+|||++|+.+++.
T Consensus 2 ~iiG~s~--~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 2 ELIGRSE--WINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp --CCSSH--HHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CceeCCH--HHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHh
Confidence 5788877 6666665552 122345789999999999999999987
No 51
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.13 E-value=3.6e-05 Score=72.74 Aligned_cols=149 Identities=14% Similarity=0.190 Sum_probs=83.5
Q ss_pred ccccccch-HHHHHHHHHH-hcC---------CCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCH
Q 038454 107 TTLVGENT-KKIVKKVWED-LMG---------DKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDL 175 (359)
Q Consensus 107 ~~~vGr~~-~~~~~~l~~~-l~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~ 175 (359)
..+.|-+. .+++.+.+.+ +.. ..++=|.++|++|+|||+||+++++. .... .+.++.+.-.
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e---~~~~---~~~v~~s~l~-- 252 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT---IGAN---FIFSPASGIV-- 252 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH---HTCE---EEEEEGGGTC--
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHH---hCCC---EEEEehhhhc--
Confidence 34666655 3344444444 322 24577999999999999999999998 2222 2334433211
Q ss_pred HHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhcCCcEEEEEecC----------------------------------C
Q 038454 176 VKLQAEIAMALKLSLTEDEDKVSRARRLLGKLKAKKKFVLILDDI----------------------------------D 221 (359)
Q Consensus 176 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv----------------------------------~ 221 (359)
... .......+..+...-....+++|++|++ .
T Consensus 253 ------------sk~--~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~ 318 (437)
T 4b4t_L 253 ------------DKY--IGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNL 318 (437)
T ss_dssp ------------CSS--SSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCT
T ss_pred ------------ccc--chHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCC
Confidence 111 1122233333333333337788888887 2
Q ss_pred CC-eEEEeec----------ccc-e-eeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCch
Q 038454 222 NH-TFCWGLR----------SMG-C-EEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQ 281 (359)
Q Consensus 222 ~g-~ilvTtr----------~~~-~-~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 281 (359)
.+ .||.||. +.+ . ..+.++..+.++-.++|..+...-......+ ...+++.+.|.-
T Consensus 319 ~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~d----l~~lA~~t~G~s 387 (437)
T 4b4t_L 319 GQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFD----FEAAVKMSDGFN 387 (437)
T ss_dssp TSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCC----HHHHHHTCCSCC
T ss_pred CCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhCCCCC
Confidence 23 5666776 122 1 3578888888888888877653322212222 355677777654
No 52
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.12 E-value=3.7e-05 Score=71.95 Aligned_cols=149 Identities=14% Similarity=0.172 Sum_probs=82.9
Q ss_pred ccccccch-HHHHHHHHHH-hcC---------CCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCH
Q 038454 107 TTLVGENT-KKIVKKVWED-LMG---------DKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDL 175 (359)
Q Consensus 107 ~~~vGr~~-~~~~~~l~~~-l~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~ 175 (359)
..+.|-+. .+++.+.+.+ +.. ..++=|.++|++|+|||.||+++++. ....| +.++.+.
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e---~~~~f---i~v~~s~---- 251 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ---TSATF---LRIVGSE---- 251 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHH---HTCEE---EEEESGG----
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHH---hCCCE---EEEEHHH----
Confidence 34666655 3344444444 332 23577999999999999999999998 22222 2333221
Q ss_pred HHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhcCCcEEEEEecC----------------------------------C
Q 038454 176 VKLQAEIAMALKLSLTEDEDKVSRARRLLGKLKAKKKFVLILDDI----------------------------------D 221 (359)
Q Consensus 176 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv----------------------------------~ 221 (359)
+.... ....+..++.+...-+...+++|++|++ .
T Consensus 252 ----------l~sk~--vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~ 319 (437)
T 4b4t_I 252 ----------LIQKY--LGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDR 319 (437)
T ss_dssp ----------GCCSS--SSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCS
T ss_pred ----------hhhcc--CchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCC
Confidence 11111 1122333334433333336778888877 2
Q ss_pred CC-eEEEeec----------ccc-e-eeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCch
Q 038454 222 NH-TFCWGLR----------SMG-C-EEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQ 281 (359)
Q Consensus 222 ~g-~ilvTtr----------~~~-~-~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 281 (359)
.+ .||.||. +.+ . ..+.++.-+.++-.++|..++..-......+ ...|++.+.|.-
T Consensus 320 ~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvd----l~~LA~~T~GfS 388 (437)
T 4b4t_I 320 GDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVN----LETLVTTKDDLS 388 (437)
T ss_dssp SSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCC----HHHHHHHCCSCC
T ss_pred CCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCCC
Confidence 34 5666776 111 1 3477888888888888877664322212222 345667776653
No 53
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.12 E-value=3e-05 Score=80.05 Aligned_cols=132 Identities=14% Similarity=0.238 Sum_probs=80.6
Q ss_pred ccccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHcCccc--ccCCC-c-cEEEEEeCCCcCHHHHHHHH
Q 038454 107 TTLVGENTKKIVKKVWEDLMGDKVTKIGVWGMGGFGKTAIMRHINNRPQE--ETNEF-S-DVIWVTVSQPLDLVKLQAEI 182 (359)
Q Consensus 107 ~~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~~F-~-~~~wv~~~~~~~~~~~~~~i 182 (359)
++++||+. ++..++..+.......+.++|.+|+|||+||+.+++.+.. +.... . .+++++.+.-..
T Consensus 170 d~viGr~~--~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~-------- 239 (854)
T 1qvr_A 170 DPVIGRDE--EIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA-------- 239 (854)
T ss_dssp CCCCSCHH--HHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-------------
T ss_pred cccCCcHH--HHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc--------
Confidence 56899976 9999999998776677899999999999999999987311 00111 1 233443322100
Q ss_pred HHHhcCCCCCCccHHHHHHHHHHHHhc-CCcEEEEEecC------------------------CCC-eEEEeec------
Q 038454 183 AMALKLSLTEDEDKVSRARRLLGKLKA-KKKFVLILDDI------------------------DNH-TFCWGLR------ 230 (359)
Q Consensus 183 ~~~l~~~~~~~~~~~~~~~~l~~~l~~-~k~~LlVlDdv------------------------~~g-~ilvTtr------ 230 (359)
+.. ...........+...+.. +++.+|++|++ ..+ .+|.+|.
T Consensus 240 ----g~~--~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~~i~~I~at~~~~~~~ 313 (854)
T 1qvr_A 240 ----GAK--YRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATTLDEYRE 313 (854)
T ss_dssp ------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHTTCCCEEEEECHHHHHH
T ss_pred ----cCc--cchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCCCeEEEEecCchHHhh
Confidence 000 011233334444444433 36789999998 122 4555554
Q ss_pred -------ccceeeeecCCCChHHHHHHHHHh
Q 038454 231 -------SMGCEEVRVPPLSKEEALNLFLDK 254 (359)
Q Consensus 231 -------~~~~~~~~l~~L~~~ea~~lf~~~ 254 (359)
...+..+.+++++.++..+++...
T Consensus 314 ~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 314 IEKDPALERRFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp HTTCTTTCSCCCCEEECCCCHHHHHHHHHHH
T ss_pred hccCHHHHhCCceEEeCCCCHHHHHHHHHhh
Confidence 111245899999999999998754
No 54
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.09 E-value=4.4e-05 Score=72.15 Aligned_cols=127 Identities=20% Similarity=0.223 Sum_probs=74.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHh
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAMALKLSLTEDEDKVSRARRLLGKLK 208 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 208 (359)
.++-|.++|++|+|||.||+++++. .... .+.++.+. +.... ....+..++.+...-+
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e---~~~~---fi~vs~s~--------------L~sk~--vGesek~ir~lF~~Ar 299 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANR---TDAT---FIRVIGSE--------------LVQKY--VGEGARMVRELFEMAR 299 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHH---HTCE---EEEEEGGG--------------GCCCS--SSHHHHHHHHHHHHHH
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhc---cCCC---eEEEEhHH--------------hhccc--CCHHHHHHHHHHHHHH
Confidence 4678999999999999999999998 2222 23333322 11111 1122233333333333
Q ss_pred cCCcEEEEEecC----------------------------------CCC-eEEEeec----------ccc-e-eeeecCC
Q 038454 209 AKKKFVLILDDI----------------------------------DNH-TFCWGLR----------SMG-C-EEVRVPP 241 (359)
Q Consensus 209 ~~k~~LlVlDdv----------------------------------~~g-~ilvTtr----------~~~-~-~~~~l~~ 241 (359)
...+++|++|++ ..+ .||.||. +.+ . ..+.++.
T Consensus 300 ~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~l 379 (467)
T 4b4t_H 300 TKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSL 379 (467)
T ss_dssp HTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCC
T ss_pred hcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCC
Confidence 337788888887 223 4566775 122 2 4578888
Q ss_pred CChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCch
Q 038454 242 LSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQ 281 (359)
Q Consensus 242 L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 281 (359)
.+.++-.++|..++..-....... ...|++.|.|.-
T Consensus 380 Pd~~~R~~Ilk~~l~~~~l~~dvd----l~~LA~~T~GfS 415 (467)
T 4b4t_H 380 PDLEGRANIFRIHSKSMSVERGIR----WELISRLCPNST 415 (467)
T ss_dssp CCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHHCCSCC
T ss_pred cCHHHHHHHHHHHhcCCCCCCCCC----HHHHHHHCCCCC
Confidence 888888888887754322212222 355777787753
No 55
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.08 E-value=0.00012 Score=66.05 Aligned_cols=149 Identities=12% Similarity=0.137 Sum_probs=83.1
Q ss_pred ccccccchHHHHHHHHHHhc-------------CCCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCc
Q 038454 107 TTLVGENTKKIVKKVWEDLM-------------GDKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPL 173 (359)
Q Consensus 107 ~~~vGr~~~~~~~~l~~~l~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~ 173 (359)
..++|.+. .++.|.+++. -...+.+.|+|++|+|||+||+.+++.. ... ++.++
T Consensus 15 ~di~G~~~--~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~---~~~-----~i~v~--- 81 (301)
T 3cf0_A 15 EDIGGLED--VKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC---QAN-----FISIK--- 81 (301)
T ss_dssp GGSCSCHH--HHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT---TCE-----EEEEC---
T ss_pred HHhCCHHH--HHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh---CCC-----EEEEE---
Confidence 46888876 4444444332 1345679999999999999999999872 221 22222
Q ss_pred CHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhcCCcEEEEEecC---------------------------------
Q 038454 174 DLVKLQAEIAMALKLSLTEDEDKVSRARRLLGKLKAKKKFVLILDDI--------------------------------- 220 (359)
Q Consensus 174 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv--------------------------------- 220 (359)
...+.... .+.. ... ....+...... .+.+|+||++
T Consensus 82 -~~~l~~~~---~g~~---~~~---~~~~f~~a~~~-~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~ 150 (301)
T 3cf0_A 82 -GPELLTMW---FGES---EAN---VREIFDKARQA-APCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS 150 (301)
T ss_dssp -HHHHHHHH---HTTC---TTH---HHHHHHHHHHT-CSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSC
T ss_pred -hHHHHhhh---cCch---HHH---HHHHHHHHHhc-CCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhccc
Confidence 22222211 1211 111 11122222233 6789999987
Q ss_pred -CCC-eEEEeec----------cc-ce-eeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhH
Q 038454 221 -DNH-TFCWGLR----------SM-GC-EEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLA 283 (359)
Q Consensus 221 -~~g-~ilvTtr----------~~-~~-~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pla 283 (359)
..+ .||.||. .. .. ..+.++..+.++-.+++...+........... ..+++.+.|.|-+
T Consensus 151 ~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~----~~la~~~~g~sg~ 223 (301)
T 3cf0_A 151 TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDL----EFLAKMTNGFSGA 223 (301)
T ss_dssp TTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCH----HHHHHTCSSCCHH
T ss_pred CCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchH----HHHHHHcCCCCHH
Confidence 123 5666666 11 11 35788999999988888777643322112222 3455667776643
No 56
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.07 E-value=0.0003 Score=61.66 Aligned_cols=48 Identities=23% Similarity=0.225 Sum_probs=35.0
Q ss_pred cccccccch-HHHHHHHHHHhcCC---------CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 106 TTTLVGENT-KKIVKKVWEDLMGD---------KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 106 ~~~~vGr~~-~~~~~~l~~~l~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
-..++|.+. .+.+.+++.++... ..+-+.|+|++|+||||||+.+++.
T Consensus 11 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 11 FADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp GGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 457899876 34444555555331 2346899999999999999999987
No 57
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.07 E-value=3.1e-05 Score=73.05 Aligned_cols=126 Identities=13% Similarity=0.153 Sum_probs=71.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHh
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAMALKLSLTEDEDKVSRARRLLGKLK 208 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 208 (359)
.++-|.++|++|+|||.||+++++. .... .+.++.+. +.... .......++.+...-+
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e---~~~~---f~~v~~s~--------------l~~~~--vGese~~ir~lF~~A~ 271 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQ---TNAT---FLKLAAPQ--------------LVQMY--IGEGAKLVRDAFALAK 271 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH---HTCE---EEEEEGGG--------------GCSSC--SSHHHHHHHHHHHHHH
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHH---hCCC---EEEEehhh--------------hhhcc--cchHHHHHHHHHHHHH
Confidence 4577999999999999999999998 2222 23333322 11111 1122233333333222
Q ss_pred cCCcEEEEEecC----------------------------------CCC-eEEEeec----------ccc-e-eeeecCC
Q 038454 209 AKKKFVLILDDI----------------------------------DNH-TFCWGLR----------SMG-C-EEVRVPP 241 (359)
Q Consensus 209 ~~k~~LlVlDdv----------------------------------~~g-~ilvTtr----------~~~-~-~~~~l~~ 241 (359)
...+++|++|++ ..+ .||.||. +.+ . ..+.++.
T Consensus 272 ~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~l 351 (434)
T 4b4t_M 272 EKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPL 351 (434)
T ss_dssp HHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCC
T ss_pred hcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCC
Confidence 226778888887 233 4556776 112 1 3578888
Q ss_pred CChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCc
Q 038454 242 LSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGL 280 (359)
Q Consensus 242 L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~ 280 (359)
.+.++-.++|..++..-......+ ...|++.+.|.
T Consensus 352 Pd~~~R~~Il~~~~~~~~~~~dvd----l~~lA~~t~G~ 386 (434)
T 4b4t_M 352 PSEDSRAQILQIHSRKMTTDDDIN----WQELARSTDEF 386 (434)
T ss_dssp CCHHHHHHHHHHHHHHSCBCSCCC----HHHHHHHCSSC
T ss_pred cCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCC
Confidence 888888888876653221111222 35577777764
No 58
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.04 E-value=7.9e-05 Score=75.97 Aligned_cols=133 Identities=18% Similarity=0.210 Sum_probs=82.9
Q ss_pred ccccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHcCcccccC---CCccEEE-EEeCCCcCHHHHHHHH
Q 038454 107 TTLVGENTKKIVKKVWEDLMGDKVTKIGVWGMGGFGKTAIMRHINNRPQEETN---EFSDVIW-VTVSQPLDLVKLQAEI 182 (359)
Q Consensus 107 ~~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---~F~~~~w-v~~~~~~~~~~~~~~i 182 (359)
..++|++. ++..+...+......-+.|+|.+|+|||++|+.+++.+....- ...+.+| ++.+.-
T Consensus 186 d~~iGr~~--~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l---------- 253 (758)
T 1r6b_X 186 DPLIGREK--ELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL---------- 253 (758)
T ss_dssp CCCCSCHH--HHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC------------
T ss_pred CCccCCHH--HHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH----------
Confidence 56899976 8999999998777778899999999999999999987311100 1122232 111110
Q ss_pred HHHhcCCCCCCccHHHHHHHHHHHHhcCCcEEEEEecC------------------------CCC--eEEEeec------
Q 038454 183 AMALKLSLTEDEDKVSRARRLLGKLKAKKKFVLILDDI------------------------DNH--TFCWGLR------ 230 (359)
Q Consensus 183 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv------------------------~~g--~ilvTtr------ 230 (359)
+... ......+.....+.+.+...++.+|++|++ ..| .+|.+|.
T Consensus 254 ---~~~~-~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~~~~~~I~at~~~~~~~ 329 (758)
T 1r6b_X 254 ---LAGT-KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSN 329 (758)
T ss_dssp ----CCC-CCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCEEEEEECHHHHHC
T ss_pred ---hccc-cccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhCCCeEEEEEeCchHHhh
Confidence 0000 112233444445555554436788999998 123 5555554
Q ss_pred --------ccceeeeecCCCChHHHHHHHHHhh
Q 038454 231 --------SMGCEEVRVPPLSKEEALNLFLDKV 255 (359)
Q Consensus 231 --------~~~~~~~~l~~L~~~ea~~lf~~~~ 255 (359)
......+.+++.+.++..+++....
T Consensus 330 ~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 330 IFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp CCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred hhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 0112458999999999988887654
No 59
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.99 E-value=8.3e-05 Score=70.07 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=22.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.++=|.++|++|+|||+||+++++.
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4566999999999999999999998
No 60
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.97 E-value=7.6e-05 Score=76.10 Aligned_cols=130 Identities=15% Similarity=0.194 Sum_probs=78.3
Q ss_pred ccccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHcCcccccCCC--ccEEEEEeCCCcCHHHHHHHHHH
Q 038454 107 TTLVGENTKKIVKKVWEDLMGDKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEF--SDVIWVTVSQPLDLVKLQAEIAM 184 (359)
Q Consensus 107 ~~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F--~~~~wv~~~~~~~~~~~~~~i~~ 184 (359)
.+++|++. ++..+...+......-+.++|++|+|||++|+.+++.+......+ ...-++.++-
T Consensus 180 d~iiG~~~--~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~------------- 244 (758)
T 3pxi_A 180 DPVIGRSK--EIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM------------- 244 (758)
T ss_dssp CCCCCCHH--HHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------
T ss_pred CCccCchH--HHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc-------------
Confidence 57999976 999999999877667789999999999999999998731111111 1111222111
Q ss_pred HhcCCCCCCccHHHHHHHHHHHHhcCCcEEEEEecC-----------CCC--eEEEeec-cc-------------ceeee
Q 038454 185 ALKLSLTEDEDKVSRARRLLGKLKAKKKFVLILDDI-----------DNH--TFCWGLR-SM-------------GCEEV 237 (359)
Q Consensus 185 ~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv-----------~~g--~ilvTtr-~~-------------~~~~~ 237 (359)
+.... ...+.....+.......++.+|++|.- ..| .+|.+|. .. ....+
T Consensus 245 --g~~~~--G~~e~~l~~~~~~~~~~~~~iLfiD~~~~~~~~L~~~l~~~~v~~I~at~~~~~~~~~~~d~al~rRf~~i 320 (758)
T 3pxi_A 245 --GTKYR--GEFEDRLKKVMDEIRQAGNIILFIDAAIDASNILKPSLARGELQCIGATTLDEYRKYIEKDAALERRFQPI 320 (758)
T ss_dssp ------------CTTHHHHHHHHHTCCCCEEEECC--------CCCTTSSSCEEEEECCTTTTHHHHTTCSHHHHSEEEE
T ss_pred --ccccc--chHHHHHHHHHHHHHhcCCEEEEEcCchhHHHHHHHHHhcCCEEEEeCCChHHHHHHhhccHHHHhhCcEE
Confidence 10000 011112222233333237788899843 334 6666665 11 22468
Q ss_pred ecCCCChHHHHHHHHHhh
Q 038454 238 RVPPLSKEEALNLFLDKV 255 (359)
Q Consensus 238 ~l~~L~~~ea~~lf~~~~ 255 (359)
.+++.+.++..+++....
T Consensus 321 ~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 321 QVDQPSVDESIQILQGLR 338 (758)
T ss_dssp ECCCCCHHHHHHHHHHTT
T ss_pred EeCCCCHHHHHHHHHHHH
Confidence 999999999999998654
No 61
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.89 E-value=0.00012 Score=66.09 Aligned_cols=121 Identities=13% Similarity=0.048 Sum_probs=75.8
Q ss_pred HHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCC-CcCHHHHHHHHHHHhcCCCCCCcc
Q 038454 117 IVKKVWEDLMGDKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQ-PLDLVKLQAEIAMALKLSLTEDED 195 (359)
Q Consensus 117 ~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~ 195 (359)
.++.|...+.+++.+...++|++|+||||+|..+++.+...........+++.+. ...+..+ +++...+.....
T Consensus 5 ~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~i-r~li~~~~~~p~---- 79 (305)
T 2gno_A 5 QLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDI-RTIKDFLNYSPE---- 79 (305)
T ss_dssp HHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHH-HHHHHHHTSCCS----
T ss_pred HHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHH-HHHHHHHhhccc----
Confidence 6677777887777789999999999999999999875211111222345555443 3333333 334444432211
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEecC------------------CCC-eEEEeec-c------cceeeeecCCCChHHHHH
Q 038454 196 KVSRARRLLGKLKAKKKFVLILDDI------------------DNH-TFCWGLR-S------MGCEEVRVPPLSKEEALN 249 (359)
Q Consensus 196 ~~~~~~~l~~~l~~~k~~LlVlDdv------------------~~g-~ilvTtr-~------~~~~~~~l~~L~~~ea~~ 249 (359)
.+ ++-++|+|++ .+. .+|++|. . ...+.+.+.+++.++..+
T Consensus 80 ------------~~-~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR~~~f~~l~~~~i~~ 146 (305)
T 2gno_A 80 ------------LY-TRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSRVFRVVVNVPKEFRD 146 (305)
T ss_dssp ------------SS-SSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCHHHHH
T ss_pred ------------cC-CceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHceeEeCCCCCHHHHHH
Confidence 12 5677888888 234 5555554 0 001178999999999999
Q ss_pred HHHHhh
Q 038454 250 LFLDKV 255 (359)
Q Consensus 250 lf~~~~ 255 (359)
.+...+
T Consensus 147 ~L~~~~ 152 (305)
T 2gno_A 147 LVKEKI 152 (305)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 988775
No 62
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.86 E-value=0.00037 Score=67.11 Aligned_cols=153 Identities=15% Similarity=0.149 Sum_probs=86.5
Q ss_pred ccccccchHHHHHHHHHHhc-------------CCCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCc
Q 038454 107 TTLVGENTKKIVKKVWEDLM-------------GDKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPL 173 (359)
Q Consensus 107 ~~~vGr~~~~~~~~l~~~l~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~ 173 (359)
..++|.+. .+.+|.+++. .....-|.|+|++|+|||+||+.+++. .... .+.++.+
T Consensus 204 ~~i~G~~~--~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~---~~~~---fv~vn~~--- 272 (489)
T 3hu3_A 204 DDIGGCRK--QLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE---TGAF---FFLINGP--- 272 (489)
T ss_dssp GGCCSCHH--HHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHH---CSSE---EEEEEHH---
T ss_pred HHcCCHHH--HHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHH---hCCC---EEEEEch---
Confidence 45788866 5555555442 234567999999999999999999887 2222 2333321
Q ss_pred CHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhcCCcEEEEEecC------------------------------CC-
Q 038454 174 DLVKLQAEIAMALKLSLTEDEDKVSRARRLLGKLKAKKKFVLILDDI------------------------------DN- 222 (359)
Q Consensus 174 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv------------------------------~~- 222 (359)
.+ . .... ..........+.....+ ++.+|+||++ .+
T Consensus 273 ---~l----~----~~~~-g~~~~~~~~~f~~A~~~-~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~ 339 (489)
T 3hu3_A 273 ---EI----M----SKLA-GESESNLRKAFEEAEKN-APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRA 339 (489)
T ss_dssp ---HH----H----TSCT-THHHHHHHHHHHHHHHT-CSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTS
T ss_pred ---Hh----h----hhhc-chhHHHHHHHHHHHHhc-CCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCC
Confidence 11 1 1111 11112222223333333 7788999997 12
Q ss_pred C-eEEEeeccc-----------ce-eeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCc-hhHHHHH
Q 038454 223 H-TFCWGLRSM-----------GC-EEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGL-QLAIFTV 287 (359)
Q Consensus 223 g-~ilvTtr~~-----------~~-~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~-Plai~~~ 287 (359)
+ .||.||... .. ..+.+...+.++-.++|...+.......... ...++..+.|. +-.+..+
T Consensus 340 ~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~----l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 340 HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGHVGADLAAL 414 (489)
T ss_dssp CEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCC----HHHHHHTCTTCCHHHHHHH
T ss_pred ceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhh----HHHHHHHccCCcHHHHHHH
Confidence 3 555566610 11 3588999999999999988764322212222 24566667664 5444443
No 63
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.85 E-value=0.00075 Score=61.68 Aligned_cols=70 Identities=4% Similarity=-0.014 Sum_probs=46.6
Q ss_pred eeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHHHHHhh------cC--CCChhHHHHHHHHH
Q 038454 236 EVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQLAIFTVVGCM------RG--VDEIHEWRNALNEL 307 (359)
Q Consensus 236 ~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~L------~~--~~~~~~w~~~l~~~ 307 (359)
.+.+++.+.++-.+++.+.+...+. ....+.+..|++.+.|.|-.+..+...+ .. .-+.+.-+.+++.+
T Consensus 174 ~~~Ld~~~~~~l~~iL~~~~~~~~~---~~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a~~~~~~~It~~~v~~al~~~ 250 (334)
T 1in4_A 174 ILELDFYTVKELKEIIKRAASLMDV---EIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVL 250 (334)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHTTC---CBCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred eeeCCCCCHHHHHHHHHHHHHHcCC---CcCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHh
Confidence 4789999999999999887632211 2235678899999999997654443222 22 24556666666665
Q ss_pred h
Q 038454 308 R 308 (359)
Q Consensus 308 ~ 308 (359)
.
T Consensus 251 ~ 251 (334)
T 1in4_A 251 N 251 (334)
T ss_dssp T
T ss_pred C
Confidence 4
No 64
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.84 E-value=0.00067 Score=68.79 Aligned_cols=149 Identities=17% Similarity=0.194 Sum_probs=85.4
Q ss_pred ccccccch-HHHHHHHHHH-hcCC---------CccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCH
Q 038454 107 TTLVGENT-KKIVKKVWED-LMGD---------KVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDL 175 (359)
Q Consensus 107 ~~~vGr~~-~~~~~~l~~~-l~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~ 175 (359)
..+.|-+. .+++.+++.+ |... .++-|.++|++|+|||+||+++++.. ..+ .+.|+.+.
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el---g~~---~~~v~~~~---- 273 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAF---FFLINGPE---- 273 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT---TCE---EEEEEHHH----
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh---CCe---EEEEEhHH----
Confidence 34667665 4445555554 3332 35679999999999999999999982 222 23343211
Q ss_pred HHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhcCCcEEEEEecC-------------------------------CCC-
Q 038454 176 VKLQAEIAMALKLSLTEDEDKVSRARRLLGKLKAKKKFVLILDDI-------------------------------DNH- 223 (359)
Q Consensus 176 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv-------------------------------~~g- 223 (359)
+.... ....+..++.+.+.-....+.+|+||++ ..+
T Consensus 274 ----------l~sk~--~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V 341 (806)
T 3cf2_A 274 ----------IMSKL--AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHV 341 (806)
T ss_dssp ----------HHSSC--TTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCE
T ss_pred ----------hhccc--chHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCE
Confidence 11111 1122333333433333337889999998 123
Q ss_pred eEEEeec----------ccc-e-eeeecCCCChHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHcCCch
Q 038454 224 TFCWGLR----------SMG-C-EEVRVPPLSKEEALNLFLDKVGRNILHVPTLNEEIINSVVEECAGLQ 281 (359)
Q Consensus 224 ~ilvTtr----------~~~-~-~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 281 (359)
-||.||. +.+ . ..+.++..+.++-.++|..+........+.. ...|++.+.|..
T Consensus 342 ~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvd----l~~lA~~T~Gfs 407 (806)
T 3cf2_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGHV 407 (806)
T ss_dssp EEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCC----HHHHHHHCCSCC
T ss_pred EEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhcCCCC
Confidence 4555665 111 1 3588888888888888877653322212222 345777777764
No 65
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.80 E-value=0.001 Score=63.60 Aligned_cols=48 Identities=25% Similarity=0.214 Sum_probs=35.6
Q ss_pred cccccccch-HHHHHHHHHHhcCC---------CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 106 TTTLVGENT-KKIVKKVWEDLMGD---------KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 106 ~~~~vGr~~-~~~~~~l~~~l~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
-..++|.+. .+++.+++..+.+. -++-|.|+|++|+|||+||+.+++.
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 356888876 44555666655432 2345889999999999999999987
No 66
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.71 E-value=3.5e-05 Score=61.42 Aligned_cols=45 Identities=9% Similarity=0.194 Sum_probs=29.6
Q ss_pred ccccccchHHHHHHHHHHhcC--CCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 107 TTLVGENTKKIVKKVWEDLMG--DKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 107 ~~~vGr~~~~~~~~l~~~l~~--~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..++|++. .+.++.+.+.. ....-|.|+|.+|+|||++|+.+++.
T Consensus 4 ~~~iG~s~--~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 4 FDKLGNSA--AIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp ----CCCH--HHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred cCceeCCH--HHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHh
Confidence 45788876 55555554421 22245889999999999999998887
No 67
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.69 E-value=0.00017 Score=64.92 Aligned_cols=45 Identities=18% Similarity=0.358 Sum_probs=33.0
Q ss_pred ccccccchHHHHHHHHHHhcCC---------CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 107 TTLVGENTKKIVKKVWEDLMGD---------KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 107 ~~~vGr~~~~~~~~l~~~l~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..++|.+. .++.+...+... ....+.++|++|+|||++|+.+++.
T Consensus 17 ~~i~G~~~--~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 17 KRVVGQDE--AIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp TTCCSCHH--HHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHH
T ss_pred hhcCCHHH--HHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHH
Confidence 35778865 555555554321 1357999999999999999999987
No 68
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.68 E-value=0.00012 Score=66.19 Aligned_cols=45 Identities=13% Similarity=0.327 Sum_probs=32.9
Q ss_pred ccccccchHHHHHHHHHHhcC--CCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 107 TTLVGENTKKIVKKVWEDLMG--DKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 107 ~~~vGr~~~~~~~~l~~~l~~--~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..++|++. .+.++...+.. .....|.|+|.+|+|||++|+.+++.
T Consensus 2 ~~iig~s~--~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 2 SHMIGSSP--AMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp -CCCCCSH--HHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHH
T ss_pred CCcEECCH--HHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHh
Confidence 35788877 55555554432 23356889999999999999999886
No 69
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.68 E-value=4.7e-05 Score=61.19 Aligned_cols=40 Identities=20% Similarity=0.339 Sum_probs=28.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCC
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQ 171 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~ 171 (359)
.-..++|+|+.|+|||||++.+++.+ .. ..+ .+++++...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~-~~-~g~-~~~~~~~~~ 74 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA-LE-AGK-NAAYIDAAS 74 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH-HT-TTC-CEEEEETTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH-Hh-cCC-cEEEEcHHH
Confidence 45689999999999999999999873 21 222 256666543
No 70
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.40 E-value=0.00011 Score=66.38 Aligned_cols=66 Identities=20% Similarity=0.294 Sum_probs=44.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEe--CCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHh
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTV--SQPLDLVKLQAEIAMALKLSLTEDEDKVSRARRLLGKLK 208 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~--~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 208 (359)
+++.|+|++|+|||+||.+++.. .. ..++|++. .+..+. . ..+.+.....+.+.+.
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~-~G-----~~VlyIs~~~eE~v~~---------------~-~~~le~~l~~i~~~l~ 181 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA-LG-----GKDKYATVRFGEPLSG---------------Y-NTDFNVFVDDIARAML 181 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH-HH-----TTSCCEEEEBSCSSTT---------------C-BCCHHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh-CC-----CCEEEEEecchhhhhh---------------h-hcCHHHHHHHHHHHHh
Confidence 56789999999999999999875 11 12456666 322110 0 1345566666777777
Q ss_pred cCCcEEEEEecC
Q 038454 209 AKKKFVLILDDI 220 (359)
Q Consensus 209 ~~k~~LlVlDdv 220 (359)
. .+ +||+|++
T Consensus 182 ~-~~-LLVIDsI 191 (331)
T 2vhj_A 182 Q-HR-VIVIDSL 191 (331)
T ss_dssp H-CS-EEEEECC
T ss_pred h-CC-EEEEecc
Confidence 6 55 9999998
No 71
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.37 E-value=0.00057 Score=62.82 Aligned_cols=83 Identities=16% Similarity=0.228 Sum_probs=55.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHHHhcCCCC-----CCccHHHHHHHHH
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAMALKLSLT-----EDEDKVSRARRLL 204 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 204 (359)
-.++.|+|++|+||||||.+++.... ..+ ..++|++....++.. .+..++.... ...+.++....+.
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~-~~g--g~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQ-KMG--GVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHH-HTT--CCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH-hcC--CeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 36999999999999999999988732 111 247888877766654 4455554321 1234555555555
Q ss_pred HHHhcCCcEEEEEecC
Q 038454 205 GKLKAKKKFVLILDDI 220 (359)
Q Consensus 205 ~~l~~~k~~LlVlDdv 220 (359)
..+...+.-++|+|.+
T Consensus 133 ~l~~~~~~dlvVIDSi 148 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSV 148 (356)
T ss_dssp HHHHTSCCSEEEEECT
T ss_pred HHhhhcCCCeEEehHh
Confidence 5555435668999997
No 72
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.35 E-value=0.00026 Score=64.05 Aligned_cols=47 Identities=11% Similarity=0.193 Sum_probs=32.4
Q ss_pred ccccccch--HHHHHHHHHHhcCC---CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 107 TTLVGENT--KKIVKKVWEDLMGD---KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 107 ~~~vGr~~--~~~~~~l~~~l~~~---~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..|++.+. ...+..+..++..- ....+.|+|++|+|||+||..+++.
T Consensus 124 d~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 124 SDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp GGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred hhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 44554432 22444555555431 2468999999999999999999987
No 73
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.35 E-value=0.00091 Score=57.69 Aligned_cols=89 Identities=13% Similarity=0.078 Sum_probs=53.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccC----CCccEEEEEeCCCcCHHHHHHHHHHHhcCCC---------CCCccH
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETN----EFSDVIWVTVSQPLDLVKLQAEIAMALKLSL---------TEDEDK 196 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~---------~~~~~~ 196 (359)
-.++.|+|++|+|||||+..++... .... .-..++|++....++...+. .++..++... ....+.
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~-~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTC-QLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNT 101 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHT-TSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH-hCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCH
Confidence 3689999999999999999998741 1111 12468888877655554442 3444444321 011122
Q ss_pred H---HHHHHHHHHHhcCCcEEEEEecC
Q 038454 197 V---SRARRLLGKLKAKKKFVLILDDI 220 (359)
Q Consensus 197 ~---~~~~~l~~~l~~~k~~LlVlDdv 220 (359)
. .....+.+.+...+.-+||+|++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~lliiD~~ 128 (243)
T 1n0w_A 102 DHQTQLLYQASAMMVESRYALLIVDSA 128 (243)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETS
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEeCc
Confidence 2 22334555554447789999997
No 74
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.33 E-value=0.00082 Score=61.14 Aligned_cols=90 Identities=14% Similarity=0.214 Sum_probs=56.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCccccc--CC-CccEEEEEeCCCcCHHHHHHHHHHHhcCCCC---------CCccHH
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEET--NE-FSDVIWVTVSQPLDLVKLQAEIAMALKLSLT---------EDEDKV 197 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~~-F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------~~~~~~ 197 (359)
-.++.|+|.+|+||||||.+++....... +. -..++|++....++..++.. ++..++.... ...+.+
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~~~~~ 185 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALGLDIDNVMNNIYYIRAINTD 185 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhCCCHHHHhccEEEEeCCCHH
Confidence 36899999999999999999987621110 01 23588999888777666543 3455543210 111222
Q ss_pred ---HHHHHHHHHHhc-CCcEEEEEecC
Q 038454 198 ---SRARRLLGKLKA-KKKFVLILDDI 220 (359)
Q Consensus 198 ---~~~~~l~~~l~~-~k~~LlVlDdv 220 (359)
.....+...+.. .+.-+||+|.+
T Consensus 186 ~~~~~l~~l~~~~~~~~~~~lvVIDsl 212 (324)
T 2z43_A 186 HQIAIVDDLQELVSKDPSIKLIVVDSV 212 (324)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEETTT
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEeCc
Confidence 344455555543 46789999997
No 75
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.32 E-value=0.0021 Score=65.70 Aligned_cols=45 Identities=24% Similarity=0.273 Sum_probs=32.6
Q ss_pred ccccccchHHHHHHHHHHhc----C---------CCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 107 TTLVGENTKKIVKKVWEDLM----G---------DKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 107 ~~~vGr~~~~~~~~l~~~l~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..++|.+. .+++|.+++. . .....|.|+|++|+||||||+.+++.
T Consensus 204 ~di~G~~~--~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~ 261 (806)
T 1ypw_A 204 DDVGGCRK--QLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp GGCCSCSG--GGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHT
T ss_pred HHhCChHH--HHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 46888876 4444433332 1 23467999999999999999999987
No 76
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.27 E-value=0.00095 Score=59.99 Aligned_cols=82 Identities=7% Similarity=0.009 Sum_probs=54.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHHHhcCCCC-----CCccHHHH-HHHHHH
Q 038454 132 KIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAMALKLSLT-----EDEDKVSR-ARRLLG 205 (359)
Q Consensus 132 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~-~~~l~~ 205 (359)
++-|.|++|+|||||+.+++.... ....=..++|++....++.. .+++++.+.. ...+.++. .. +.+
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~-~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~-i~~ 102 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYM-RQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRID-MVN 102 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHH-HHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHH-HHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH-hcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHH-HHH
Confidence 789999999999999999887732 11111358899988777764 2666765432 12344444 33 323
Q ss_pred HH---hcCCcEEEEEecC
Q 038454 206 KL---KAKKKFVLILDDI 220 (359)
Q Consensus 206 ~l---~~~k~~LlVlDdv 220 (359)
.+ ...+.-|+|+|.+
T Consensus 103 ~l~~i~~~~~~lvVIDSI 120 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSL 120 (333)
T ss_dssp HHHTCCTTCCEEEEEECS
T ss_pred HHHHhhccCceEEEEecc
Confidence 33 4447889999998
No 77
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.27 E-value=0.00035 Score=71.15 Aligned_cols=45 Identities=20% Similarity=0.334 Sum_probs=33.2
Q ss_pred ccccccchHHHHHHHHHHhcC-------C--CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 107 TTLVGENTKKIVKKVWEDLMG-------D--KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 107 ~~~vGr~~~~~~~~l~~~l~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..++|.+. .+..+...+.. . ....+.++|++|+|||++|+.+++.
T Consensus 491 ~~viGq~~--a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~ 544 (758)
T 3pxi_A 491 SRVIGQDE--AVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES 544 (758)
T ss_dssp TTSCSCHH--HHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHH
T ss_pred CcCcChHH--HHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 46888866 56555555531 1 1236999999999999999999987
No 78
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.27 E-value=0.0016 Score=59.79 Aligned_cols=90 Identities=17% Similarity=0.183 Sum_probs=56.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccC---CCccEEEEEeCCCcCHHHHHHHHHHHhcCCC------------CCCc
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETN---EFSDVIWVTVSQPLDLVKLQAEIAMALKLSL------------TEDE 194 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------------~~~~ 194 (359)
-.++.|+|.+|+||||||.+++........ .-..++|++....++...+.. ++..++... ....
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g~~~~~~l~~l~~~~~~~~e 200 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFNVDHDAVLDNVLYARAYTSE 200 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCSTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcCCCHHHHHhceeEeecCCHH
Confidence 368999999999999999998876211100 123588999888777766543 344444321 1122
Q ss_pred cHHHHHHHHHHHHhc--CCcEEEEEecC
Q 038454 195 DKVSRARRLLGKLKA--KKKFVLILDDI 220 (359)
Q Consensus 195 ~~~~~~~~l~~~l~~--~k~~LlVlDdv 220 (359)
........+.+.+.. .+.-+||+|.+
T Consensus 201 ~~~~ll~~l~~~i~~~~~~~~lvVIDsl 228 (343)
T 1v5w_A 201 HQMELLDYVAAKFHEEAGIFKLLIIDSI 228 (343)
T ss_dssp HHHHHHHHHHHHHHHSCSSEEEEEEETS
T ss_pred HHHHHHHHHHHHHHhcCCCccEEEEech
Confidence 223444445555543 36779999997
No 79
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.24 E-value=0.0015 Score=55.34 Aligned_cols=83 Identities=16% Similarity=0.122 Sum_probs=50.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHHHhc-----------CCC-CCCccHH
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAMALK-----------LSL-TEDEDKV 197 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~-----------~~~-~~~~~~~ 197 (359)
-.++.|+|.+|+|||||+..++.. . -..++|++....++...+.. +...++ ... .......
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~~---~---~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGLL---S---GKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQR 92 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHH---H---CSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH---c---CCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHH
Confidence 368999999999999999999862 1 12478888766556554443 332222 111 1112223
Q ss_pred HHHHHHHHHHhcCCcEEEEEecC
Q 038454 198 SRARRLLGKLKAKKKFVLILDDI 220 (359)
Q Consensus 198 ~~~~~l~~~l~~~k~~LlVlDdv 220 (359)
.....+...+.. +.-+||+|.+
T Consensus 93 ~~~~~~~~l~~~-~~~lliiD~~ 114 (220)
T 2cvh_A 93 RVIGSLKKTVDS-NFALVVVDSI 114 (220)
T ss_dssp HHHHHHHHHCCT-TEEEEEEECC
T ss_pred HHHHHHHHHhhc-CCCEEEEcCc
Confidence 344444444433 5789999997
No 80
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.21 E-value=0.001 Score=60.34 Aligned_cols=90 Identities=13% Similarity=0.175 Sum_probs=56.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccc-----------cCCC--ccEEEEEeCCCcCHHHHHHHHHHHhcCCC------
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEE-----------TNEF--SDVIWVTVSQPLDLVKLQAEIAMALKLSL------ 190 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~-----------~~~F--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------ 190 (359)
-.++.|+|.+|+|||+||.+++...... .+.. ..++|++....++..++.. ++..++.+.
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~ 176 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLDN 176 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhcC
Confidence 3689999999999999999988651101 0111 3588999888777776654 345554321
Q ss_pred ---CCCccHH---HHHHHHHHHHhc-CCcEEEEEecC
Q 038454 191 ---TEDEDKV---SRARRLLGKLKA-KKKFVLILDDI 220 (359)
Q Consensus 191 ---~~~~~~~---~~~~~l~~~l~~-~k~~LlVlDdv 220 (359)
....+.+ .....+.+.+.. .+.-+||+|.+
T Consensus 177 l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl 213 (322)
T 2i1q_A 177 TFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSL 213 (322)
T ss_dssp EEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECS
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECc
Confidence 0112222 344455555554 36679999997
No 81
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.21 E-value=0.00093 Score=61.41 Aligned_cols=83 Identities=14% Similarity=0.148 Sum_probs=53.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHHHhcCCCC-----CCccHHHHHHHHH
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAMALKLSLT-----EDEDKVSRARRLL 204 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 204 (359)
-.++.|+|.+|+||||||.+++.... . . =..++|++....++.. .+..++.... ...+.++....+.
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~-~-~-g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~ 132 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQ-A-A-GGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 132 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHH-H-T-TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-h-C-CCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 46899999999999999999987622 1 1 1348899887766653 2445553221 1224444444444
Q ss_pred HHHhcCCcEEEEEecC
Q 038454 205 GKLKAKKKFVLILDDI 220 (359)
Q Consensus 205 ~~l~~~k~~LlVlDdv 220 (359)
......+.-+||+|.+
T Consensus 133 ~l~~~~~~~lIVIDsl 148 (349)
T 2zr9_A 133 MLVRSGALDIIVIDSV 148 (349)
T ss_dssp HHHTTTCCSEEEEECG
T ss_pred HHHhcCCCCEEEEcCh
Confidence 4443335679999997
No 82
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.20 E-value=0.00095 Score=57.05 Aligned_cols=45 Identities=22% Similarity=0.219 Sum_probs=30.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHH
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQA 180 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 180 (359)
.+++|+|.+|+|||||++.++..... .+ ..++|++... ....+..
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~-~~--~~v~~~~~~~--~~~~~~~ 68 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLR-DG--DPCIYVTTEE--SRDSIIR 68 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHH-HT--CCEEEEESSS--CHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHH-CC--CeEEEEEccc--CHHHHHH
Confidence 68999999999999999999866221 11 2366666433 3444433
No 83
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.18 E-value=0.0012 Score=61.14 Aligned_cols=83 Identities=17% Similarity=0.203 Sum_probs=54.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHHHhcCCCC-----CCccHHHHHHHHH
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAMALKLSLT-----EDEDKVSRARRLL 204 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 204 (359)
-.++.|.|.+|+||||||.+++.... . .. ..++|++....++.. .+..++.+.. ...+.++....+.
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~-~-~g-~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~ 145 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQ-K-AG-GTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIME 145 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHH-H-TT-CCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHH-H-CC-CeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHH
Confidence 36899999999999999999987732 1 11 358899988766654 2444544211 1234555555555
Q ss_pred HHHhcCCcEEEEEecC
Q 038454 205 GKLKAKKKFVLILDDI 220 (359)
Q Consensus 205 ~~l~~~k~~LlVlDdv 220 (359)
........-+||+|.+
T Consensus 146 ~l~~~~~~~lVVIDsl 161 (366)
T 1xp8_A 146 LLVRSGAIDVVVVDSV 161 (366)
T ss_dssp HHHTTTCCSEEEEECT
T ss_pred HHHhcCCCCEEEEeCh
Confidence 5554435569999998
No 84
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.09 E-value=0.0013 Score=60.50 Aligned_cols=83 Identities=13% Similarity=0.202 Sum_probs=52.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHHHhcCCCC-----CCccHHHHHHHHH
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAMALKLSLT-----EDEDKVSRARRLL 204 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 204 (359)
-.++.|.|.+|+||||||.+++.... ..+ ..++|++....++... +..++.... ...+.+.....+.
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~-~~g--~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~~ 134 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQ-REG--KTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 134 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHH-HTT--CCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-HCC--CeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHHH
Confidence 46899999999999999999987722 111 2588999877766432 344544221 1123444444444
Q ss_pred HHHhcCCcEEEEEecC
Q 038454 205 GKLKAKKKFVLILDDI 220 (359)
Q Consensus 205 ~~l~~~k~~LlVlDdv 220 (359)
......+.-+||+|.+
T Consensus 135 ~l~~~~~~~lVVIDsl 150 (356)
T 1u94_A 135 ALARSGAVDVIVVDSV 150 (356)
T ss_dssp HHHHHTCCSEEEEECG
T ss_pred HHHhccCCCEEEEcCH
Confidence 3333325568999997
No 85
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.01 E-value=0.0012 Score=59.03 Aligned_cols=25 Identities=24% Similarity=0.448 Sum_probs=22.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.++.+.++|++|+|||+||+.+++.
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4568899999999999999999998
No 86
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.97 E-value=0.0043 Score=58.52 Aligned_cols=26 Identities=27% Similarity=0.286 Sum_probs=23.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcCc
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNRP 154 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 154 (359)
.+.+|.++|.+|+||||++..++..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 46899999999999999999998763
No 87
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.92 E-value=0.001 Score=56.28 Aligned_cols=37 Identities=19% Similarity=0.245 Sum_probs=29.5
Q ss_pred HHHHHHHHhcC--CCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 117 IVKKVWEDLMG--DKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 117 ~~~~l~~~l~~--~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.+++|.+.+.. +...+|+|+|++|+|||||++.+...
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45566666653 45679999999999999999999877
No 88
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.85 E-value=0.00051 Score=60.46 Aligned_cols=48 Identities=19% Similarity=0.212 Sum_probs=34.6
Q ss_pred cccccccch-HHHHHHHHHHhcC---------CCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 106 TTTLVGENT-KKIVKKVWEDLMG---------DKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 106 ~~~~vGr~~-~~~~~~l~~~l~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
-..++|.+. .+.+.+++.++.. ...+-+.|+|++|+|||+||+.+++.
T Consensus 10 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 10 FKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp STTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH
T ss_pred HHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 356899887 4445555554432 22345889999999999999999987
No 89
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.85 E-value=0.0052 Score=52.32 Aligned_cols=45 Identities=22% Similarity=0.302 Sum_probs=30.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCc-c-cccC-CCccEEEEEeCCCcCH
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNRP-Q-EETN-EFSDVIWVTVSQPLDL 175 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~~-~-~~~~-~F~~~~wv~~~~~~~~ 175 (359)
.+++|+|++|+|||||++.++... . .... .-...+|+........
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~ 73 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRP 73 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCH
Confidence 689999999999999999998641 1 1111 1234778776554443
No 90
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.85 E-value=0.00071 Score=60.67 Aligned_cols=45 Identities=24% Similarity=0.301 Sum_probs=34.5
Q ss_pred ccccccchHHHHHHHHHHhcC--------------CCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 107 TTLVGENTKKIVKKVWEDLMG--------------DKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 107 ~~~vGr~~~~~~~~l~~~l~~--------------~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..++|.+. .++.+...+.. .....+.++|++|+|||++|+.+++.
T Consensus 15 ~~i~G~~~--~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 15 QHIIGQAD--AKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp TTCCSCHH--HHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hhcCChHH--HHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 46889866 66666655532 23467889999999999999999987
No 91
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.79 E-value=0.0016 Score=57.21 Aligned_cols=45 Identities=22% Similarity=0.273 Sum_probs=30.1
Q ss_pred ccccccchHHHHHHHHHHhc--CCCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 107 TTLVGENTKKIVKKVWEDLM--GDKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 107 ~~~vGr~~~~~~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..++|.+. .+..+.+.+. ......|.|+|.+|+|||+||+.+++.
T Consensus 6 ~~~ig~~~--~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 6 DNLLGEAN--SFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp ----CCCH--HHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred ccceeCCH--HHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 45788876 5555544332 122356889999999999999999987
No 92
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.78 E-value=0.0078 Score=58.68 Aligned_cols=45 Identities=22% Similarity=0.273 Sum_probs=31.6
Q ss_pred ccccccchHHHHHHHHHHh------cCCCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 107 TTLVGENTKKIVKKVWEDL------MGDKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 107 ~~~vGr~~~~~~~~l~~~l------~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..++|.+. ....+...+ .......+.++|++|+||||||+.++..
T Consensus 81 ~di~G~~~--vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 81 EEHHGLEK--VKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp HHCSSCHH--HHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHH
T ss_pred HHhccHHH--HHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 45778755 333332222 1224568999999999999999999987
No 93
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.77 E-value=0.0041 Score=55.68 Aligned_cols=86 Identities=15% Similarity=0.120 Sum_probs=46.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCC-CcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHH
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQ-PLDLVKLQAEIAMALKLSLTEDEDKVSRARRLLGKL 207 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 207 (359)
...+++++|.+|+||||++..++..+ ...... .+..+.... .....+.+.......+.+.....+.......+. .+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l-~~~~G~-~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~-~~ 180 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAIS-MLEKHK-KIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKE-LF 180 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH-HHTTCC-CEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHH-HG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-HHhcCC-EEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHH-Hh
Confidence 35799999999999999999998773 211222 345555432 223333444444444433222223333322232 33
Q ss_pred hcCCcEEEEEec
Q 038454 208 KAKKKFVLILDD 219 (359)
Q Consensus 208 ~~~k~~LlVlDd 219 (359)
. +.=++++|-
T Consensus 181 -~-~~dlvIiDT 190 (296)
T 2px0_A 181 -S-EYDHVFVDT 190 (296)
T ss_dssp -G-GSSEEEEEC
T ss_pred -c-CCCEEEEeC
Confidence 3 445777884
No 94
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.74 E-value=0.0064 Score=54.96 Aligned_cols=50 Identities=12% Similarity=0.068 Sum_probs=34.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHH
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAM 184 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 184 (359)
-.++.|.|.+|+||||||.+++... .. .. ..++|++.. .+..++...++.
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~-a~-~g-~~vl~~slE--~s~~~l~~R~~~ 117 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNM-SD-ND-DVVNLHSLE--MGKKENIKRLIV 117 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHH-HT-TT-CEEEEEESS--SCHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHH-HH-cC-CeEEEEECC--CCHHHHHHHHHH
Confidence 3689999999999999999998762 12 22 457787765 345555555443
No 95
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.73 E-value=0.0058 Score=57.11 Aligned_cols=90 Identities=11% Similarity=0.143 Sum_probs=52.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccc--cC-CCccEEEEEeCCCcCHHHHHHHHHHHhcCCCC---------CCccH-
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEE--TN-EFSDVIWVTVSQPLDLVKLQAEIAMALKLSLT---------EDEDK- 196 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~-~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------~~~~~- 196 (359)
-.++.|+|.+|+|||||+..++-..... .+ .-..++|++....+....+ ..+++.++.... ...+.
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl~~~~vleni~~~~~~~~~ 256 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGLDPDDALNNVAYARAYNAD 256 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCCChHhHhhcEEEeccCChH
Confidence 3689999999999999999775321110 11 2235888887766665544 335555543210 11122
Q ss_pred --HHHHHHHHHHHhcCCcEEEEEecC
Q 038454 197 --VSRARRLLGKLKAKKKFVLILDDI 220 (359)
Q Consensus 197 --~~~~~~l~~~l~~~k~~LlVlDdv 220 (359)
......+...+...+.-+||+|.+
T Consensus 257 ~~~~~l~~~~~~l~~~~~~llVIDs~ 282 (400)
T 3lda_A 257 HQLRLLDAAAQMMSESRFSLIVVDSV 282 (400)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETG
T ss_pred HHHHHHHHHHHHHHhcCCceEEecch
Confidence 233344444444446789999997
No 96
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.71 E-value=0.0008 Score=62.06 Aligned_cols=100 Identities=13% Similarity=0.145 Sum_probs=52.2
Q ss_pred HHHHHhcC-CCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcC-HHHHHHHHHHHhcCCCCCCccHH
Q 038454 120 KVWEDLMG-DKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLD-LVKLQAEIAMALKLSLTEDEDKV 197 (359)
Q Consensus 120 ~l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~ 197 (359)
+.++.+.. ..-..++|+|.+|+|||||++.+.+.+......+. ++++-+++... ..++.+.+-..+-....+.....
T Consensus 163 raID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER~~Ev~~~~~~~~~~vV~atadep~~~ 241 (422)
T 3ice_A 163 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASR 241 (422)
T ss_dssp HHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSCHHHHHHHHTTCSSEEEEECTTSCHHH
T ss_pred eeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCee-EEEEEecCChHHHHHHHHHhCeEEEEeCCCCCHHH
Confidence 34444432 33468999999999999999998876322223344 34566776543 23332222000000111111111
Q ss_pred HH-----HHHHHHHHhc-CCcEEEEEecC
Q 038454 198 SR-----ARRLLGKLKA-KKKFVLILDDI 220 (359)
Q Consensus 198 ~~-----~~~l~~~l~~-~k~~LlVlDdv 220 (359)
.. .-...+++.. ++.+||++||+
T Consensus 242 r~~~a~~alt~AEyfrd~G~dVLil~Dsl 270 (422)
T 3ice_A 242 HVQVAEMVIEKAKRLVEHKKDVIILLDSI 270 (422)
T ss_dssp HHHHHHHHHHHHHHHHHTSCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEEeCc
Confidence 11 1112333332 49999999998
No 97
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.68 E-value=0.0083 Score=56.51 Aligned_cols=26 Identities=23% Similarity=0.111 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcCc
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNRP 154 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 154 (359)
...+|.++|.+|+||||++..++..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36799999999999999999998763
No 98
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.66 E-value=0.00095 Score=54.69 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.+|.|.|++|+||||+|+.+.+.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999987
No 99
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.64 E-value=0.0083 Score=61.01 Aligned_cols=45 Identities=18% Similarity=0.271 Sum_probs=33.0
Q ss_pred ccccccchHHHHHHHHHHhcC---------CCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 107 TTLVGENTKKIVKKVWEDLMG---------DKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 107 ~~~vGr~~~~~~~~l~~~l~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..++|.+. .+..+...+.. .....+.++|++|+|||++|+.+++.
T Consensus 458 ~~v~g~~~--~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~ 511 (758)
T 1r6b_X 458 MLVFGQDK--AIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA 511 (758)
T ss_dssp TTSCSCHH--HHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred hhccCHHH--HHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHH
Confidence 45788865 55555554421 12347999999999999999999987
No 100
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.62 E-value=0.0039 Score=55.20 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 038454 133 IGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 133 i~I~G~gGiGKTtLa~~v~~~ 153 (359)
+.++|++|+||||||+.++..
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999987
No 101
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.60 E-value=0.0011 Score=53.87 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.+|+|.|++|+||||+|+.+ ..
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~ 23 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KE 23 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HH
T ss_pred cEEEEECCCCCCHHHHHHHH-HH
Confidence 47999999999999999999 54
No 102
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.60 E-value=0.034 Score=52.83 Aligned_cols=48 Identities=19% Similarity=0.160 Sum_probs=32.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHH
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEI 182 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 182 (359)
.++.|.|.+|+||||||..++.... .... ..++|++... +..++...+
T Consensus 204 ~liiI~G~pG~GKTtl~l~ia~~~~-~~~g-~~Vl~~s~E~--s~~~l~~r~ 251 (454)
T 2r6a_A 204 DLIIVAARPSVGKTAFALNIAQNVA-TKTN-ENVAIFSLEM--SAQQLVMRM 251 (454)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH-HHSS-CCEEEEESSS--CHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH-HhCC-CcEEEEECCC--CHHHHHHHH
Confidence 6899999999999999999988732 1111 2477777543 334554444
No 103
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.59 E-value=0.0011 Score=53.80 Aligned_cols=23 Identities=17% Similarity=0.094 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.+|+|.|++|+||||+|+.+...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999887
No 104
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.59 E-value=0.02 Score=54.10 Aligned_cols=26 Identities=19% Similarity=0.216 Sum_probs=23.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcCc
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNRP 154 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 154 (359)
.+++|.++|.+|+||||++..++..+
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l 124 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFL 124 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999998773
No 105
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.57 E-value=0.0024 Score=53.69 Aligned_cols=37 Identities=14% Similarity=0.304 Sum_probs=29.3
Q ss_pred HHHHHHHHhcC---CCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 117 IVKKVWEDLMG---DKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 117 ~~~~l~~~l~~---~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.++.|.+.+.. ....+|+|.|.+|+|||||++.+...
T Consensus 6 ~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 6 RIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp HHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45566665543 34579999999999999999999876
No 106
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.57 E-value=0.0099 Score=53.44 Aligned_cols=88 Identities=17% Similarity=0.144 Sum_probs=47.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCC-cCHHHHHHHHHHHhcCCC---CCCccHHHH-HHHH
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQP-LDLVKLQAEIAMALKLSL---TEDEDKVSR-ARRL 203 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~---~~~~~~~~~-~~~l 203 (359)
...+|.|+|.+|+||||++..++..+. . .. ..+.++..... ....+.+...+..++.+. ....+.... ...+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~-~-~g-~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al 179 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFV-D-EG-KSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAV 179 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH-H-TT-CCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHH-h-cC-CEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 357999999999999999999998732 1 11 12455544321 112223344455554321 112222222 2334
Q ss_pred HHHHhcCCcEEEEEecC
Q 038454 204 LGKLKAKKKFVLILDDI 220 (359)
Q Consensus 204 ~~~l~~~k~~LlVlDdv 220 (359)
...+.. ..-++++|..
T Consensus 180 ~~a~~~-~~dvvIiDtp 195 (306)
T 1vma_A 180 AHALAR-NKDVVIIDTA 195 (306)
T ss_dssp HHHHHT-TCSEEEEEEC
T ss_pred HHHHhc-CCCEEEEECC
Confidence 444544 4457788864
No 107
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.56 E-value=0.0021 Score=61.27 Aligned_cols=48 Identities=25% Similarity=0.297 Sum_probs=35.8
Q ss_pred cccccccch-HHHHHHHHHHhcCCC--ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 106 TTTLVGENT-KKIVKKVWEDLMGDK--VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 106 ~~~~vGr~~-~~~~~~l~~~l~~~~--~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
...++|.+. .+.+..++.++..+. .+-+.++|++|+|||+||+.+++.
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~ 86 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQE 86 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHH
Confidence 367999976 333345555555543 357999999999999999999987
No 108
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.54 E-value=0.0053 Score=58.19 Aligned_cols=88 Identities=16% Similarity=0.237 Sum_probs=50.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCc-CHHHHHHHHHHHhcC-------CCCCCccHHHH---
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPL-DLVKLQAEIAMALKL-------SLTEDEDKVSR--- 199 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~-------~~~~~~~~~~~--- 199 (359)
..++|+|.+|+|||||+..+.... ... .-+..+++.+++.. ...++..++...-.. ...........
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~-~~~-~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~ 229 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNI-AQE-HGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVA 229 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHH-HHH-TCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhh-hhc-cCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHH
Confidence 358999999999999999998772 221 22345667777654 344555555432000 01111111111
Q ss_pred --HHHHHHHHhc--CCcEEEEEecC
Q 038454 200 --ARRLLGKLKA--KKKFVLILDDI 220 (359)
Q Consensus 200 --~~~l~~~l~~--~k~~LlVlDdv 220 (359)
.-.+.+++.. ++++||++||+
T Consensus 230 ~~~ltiAEyFrd~~G~~VLl~~D~i 254 (473)
T 1sky_E 230 LTGLTMAEYFRDEQGQDGLLFIDNI 254 (473)
T ss_dssp HHHHHHHHHHHHHSCCEEEEEEECT
T ss_pred HHHHHHHHHHHHhcCCcEEEEeccH
Confidence 1234444442 49999999999
No 109
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.53 E-value=0.0013 Score=53.80 Aligned_cols=22 Identities=27% Similarity=0.246 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHc
Q 038454 131 TKIGVWGMGGFGKTAIMRHINN 152 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~ 152 (359)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999987
No 110
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.53 E-value=0.0077 Score=51.80 Aligned_cols=38 Identities=18% Similarity=0.107 Sum_probs=28.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQ 171 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~ 171 (359)
.++.|.|.+|+||||||.+++.... .. =..++|++...
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~~--~~-~~~v~~~~~e~ 61 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNGL--KM-GEPGIYVALEE 61 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHH--HT-TCCEEEEESSS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHH--hc-CCeEEEEEccC
Confidence 6899999999999999998876622 11 13477777554
No 111
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.52 E-value=0.0012 Score=60.25 Aligned_cols=46 Identities=17% Similarity=0.297 Sum_probs=33.6
Q ss_pred cccccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 106 TTTLVGENTKKIVKKVWEDLMGDKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 106 ~~~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
-..++|.+. .+..+...+......-+.|+|.+|+|||+||+.+++.
T Consensus 23 f~~i~G~~~--~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 23 FSAIVGQED--MKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp GGGSCSCHH--HHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHH
T ss_pred chhccChHH--HHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHh
Confidence 356899865 4444444443333445999999999999999999987
No 112
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.51 E-value=0.031 Score=52.96 Aligned_cols=51 Identities=14% Similarity=0.027 Sum_probs=35.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHH
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAM 184 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 184 (359)
-.++.|.|.+|+||||||..++.... .... ..++|++... +..++...++.
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a-~~~g-~~vl~~slE~--~~~~l~~R~~~ 250 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAA-LKEG-VGVGIYSLEM--PAAQLTLRMMC 250 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHH-HTTC-CCEEEEESSS--CHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHH-HhCC-CeEEEEECCC--CHHHHHHHHHH
Confidence 36899999999999999999988732 1111 2477776643 45566655544
No 113
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.50 E-value=0.004 Score=54.21 Aligned_cols=47 Identities=23% Similarity=0.304 Sum_probs=33.0
Q ss_pred ccccccch-HHHHHHHHHHhcCC---------CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 107 TTLVGENT-KKIVKKVWEDLMGD---------KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 107 ~~~vGr~~-~~~~~~l~~~l~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..++|.+. ...+..+...+... -.+-+.|+|++|+||||||+.+++.
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 56888765 34445555444321 1223899999999999999999987
No 114
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.48 E-value=0.009 Score=54.43 Aligned_cols=49 Identities=12% Similarity=0.108 Sum_probs=34.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHH
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAM 184 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 184 (359)
.++.|.|.+|+||||||..++.... . . =..++|++.- .+..++...++.
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~~a-~-~-g~~Vl~fSlE--ms~~ql~~Rlls 95 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLSAL-N-D-DRGVAVFSLE--MSAEQLALRALS 95 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHH-H-T-TCEEEEEESS--SCHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHH-H-c-CCeEEEEeCC--CCHHHHHHHHHH
Confidence 6899999999999999999988732 2 1 1246777653 345555555544
No 115
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.48 E-value=0.0015 Score=54.17 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..+++|+|++|+|||||++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999999876
No 116
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=96.47 E-value=0.0095 Score=56.64 Aligned_cols=89 Identities=19% Similarity=0.235 Sum_probs=58.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCc-CHHHHHHHHHHHhcCC-------C------CCCcc
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPL-DLVKLQAEIAMALKLS-------L------TEDED 195 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~------~~~~~ 195 (359)
-..++|.|.+|+|||+|+..+.+.+ .+.+-+.++++-+++.. ...++.+++...=... . ..+..
T Consensus 165 Gqr~gIfgg~GvGKT~L~~~l~~~~--a~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~d~p 242 (498)
T 1fx0_B 165 GGKIGLFGGAGVGKTVLIMELINNI--AKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEP 242 (498)
T ss_dssp TCCEEEEECSSSSHHHHHHHHHHHT--TTTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECTTSC
T ss_pred CCeEEeecCCCCCchHHHHHHHHHH--HhhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceEEEEeCCCCC
Confidence 3569999999999999999998873 23345678888888765 4566777776531111 0 00111
Q ss_pred H------HHHHHHHHHHHhc--CCcEEEEEecC
Q 038454 196 K------VSRARRLLGKLKA--KKKFVLILDDI 220 (359)
Q Consensus 196 ~------~~~~~~l~~~l~~--~k~~LlVlDdv 220 (359)
. ....-.+.++++. ++.+||++||+
T Consensus 243 ~~~R~~~~~~altiAEyfrd~~G~dVLl~~Dsi 275 (498)
T 1fx0_B 243 PGARMRVGLTALTMAEYFRDVNEQDVLLFIDNI 275 (498)
T ss_dssp HHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 1 1223344566665 59999999999
No 117
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.47 E-value=0.0017 Score=54.56 Aligned_cols=28 Identities=29% Similarity=0.378 Sum_probs=24.4
Q ss_pred cCCCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 126 MGDKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 126 ~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
......+|+|+|++|+|||||++.+...
T Consensus 21 ~~~~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 21 LDQKGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp HTSCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3345579999999999999999999987
No 118
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.44 E-value=0.0014 Score=53.46 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.+|+|+|++|+|||||++.++..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999987
No 119
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.44 E-value=0.0016 Score=54.67 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=22.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..+|.|+|++|+||||+++.++..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999987
No 120
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.43 E-value=0.00078 Score=57.73 Aligned_cols=85 Identities=15% Similarity=-0.019 Sum_probs=45.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHHHhcCCCCC--CccHHHHHHHHHHHH
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAMALKLSLTE--DEDKVSRARRLLGKL 207 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~l 207 (359)
-.++.++|..|+||||++..++++. . ..... ++.+....... ....+++.++..... .....+....+.+.+
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~-~-~~g~k-Vli~~~~~d~r---~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~ 85 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRL-E-YADVK-YLVFKPKIDTR---SIRNIQSRTGTSLPSVEVESAPEILNYIMSNS 85 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHH-H-HTTCC-EEEEEECCCGG---GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTT
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHH-H-hcCCE-EEEEEeccCch---HHHHHHHhcCCCccccccCCHHHHHHHHHHHh
Confidence 4689999999999999999998883 2 22222 34443322211 112334444432221 112233333333333
Q ss_pred hcCCcEEEEEecC
Q 038454 208 KAKKKFVLILDDI 220 (359)
Q Consensus 208 ~~~k~~LlVlDdv 220 (359)
..++.-+||+|.+
T Consensus 86 ~~~~~dvViIDEa 98 (223)
T 2b8t_A 86 FNDETKVIGIDEV 98 (223)
T ss_dssp SCTTCCEEEECSG
T ss_pred hCCCCCEEEEecC
Confidence 3323459999998
No 121
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.42 E-value=0.0018 Score=54.41 Aligned_cols=26 Identities=27% Similarity=0.487 Sum_probs=22.9
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 128 DKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 128 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
....+|+|+|+.|+|||||++.++..
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 34579999999999999999999887
No 122
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.42 E-value=0.0017 Score=53.57 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.+.|.|+|++|+||||+|+.++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999999987
No 123
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.40 E-value=0.0017 Score=53.48 Aligned_cols=23 Identities=17% Similarity=0.380 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.+++|+|++|+|||||++.+...
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 58999999999999999999876
No 124
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=96.38 E-value=0.02 Score=54.30 Aligned_cols=89 Identities=18% Similarity=0.222 Sum_probs=56.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCc-CHHHHHHHHHHHhcCC------------CCCCccH
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPL-DLVKLQAEIAMALKLS------------LTEDEDK 196 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~------------~~~~~~~ 196 (359)
-..++|.|.+|+|||+|+..+.+.+ .+.+-+.++++-+++.. ...++.+++...=... ...+...
T Consensus 153 GQr~~Ifgg~G~GKT~L~~~i~~~~--~~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtvvV~~t~d~p~ 230 (482)
T 2ck3_D 153 GGKIGLFGGAGVGKTVLIMELINNV--AKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPP 230 (482)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHT--TTTCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEEEEEECTTSCH
T ss_pred CCeeeeecCCCCChHHHHHHHHHhh--HhhCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceEEEEEECCCCCH
Confidence 3579999999999999999998873 22344567778887765 4566777776542211 0011111
Q ss_pred H------HHHHHHHHHHhc--CCcEEEEEecC
Q 038454 197 V------SRARRLLGKLKA--KKKFVLILDDI 220 (359)
Q Consensus 197 ~------~~~~~l~~~l~~--~k~~LlVlDdv 220 (359)
. ...-.+.++++. ++.+||++||+
T Consensus 231 ~~r~~~~~~a~tiAEyfrd~~G~dVLll~Dsi 262 (482)
T 2ck3_D 231 GARARVALTGLTVAEYFRDQEGQDVLLFIDNI 262 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSCEEEEEECT
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 1 122234455554 59999999999
No 125
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.37 E-value=0.016 Score=53.05 Aligned_cols=90 Identities=22% Similarity=0.320 Sum_probs=51.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcc-c-ccCCCc-cEEEEEeCCCcCHHHHHHHHHHHhcCCC------------CCCc
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQ-E-ETNEFS-DVIWVTVSQPLDLVKLQAEIAMALKLSL------------TEDE 194 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~-~-~~~~F~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~------------~~~~ 194 (359)
-.++.|+|++|+|||||+..++.... . ..+... .++|++....+....+ ..+...++... ....
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~~~ 209 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFNSN 209 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCSHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCChH
Confidence 47999999999999999999987621 0 011112 3588887665443333 23333332210 0011
Q ss_pred cHHHHHHHHHHHHhc-----CCcEEEEEecC
Q 038454 195 DKVSRARRLLGKLKA-----KKKFVLILDDI 220 (359)
Q Consensus 195 ~~~~~~~~l~~~l~~-----~k~~LlVlDdv 220 (359)
.....+..+...+.. .+.-+||+|.+
T Consensus 210 ~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ 240 (349)
T 1pzn_A 210 HQMLLVQQAEDKIKELLNTDRPVKLLIVDSL 240 (349)
T ss_dssp HHHHHHHHHHHHHHHSSSSSSCEEEEEEETS
T ss_pred HHHHHHHHHHHHHHHhccccCCCCEEEEeCc
Confidence 122334444444432 36789999998
No 126
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.36 E-value=0.0016 Score=59.18 Aligned_cols=43 Identities=16% Similarity=0.317 Sum_probs=35.0
Q ss_pred ccccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 107 TTLVGENTKKIVKKVWEDLMGDKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 107 ~~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..++|++. .+..+...+..+ .-+.++|++|+|||+||+.+++.
T Consensus 27 ~~i~g~~~--~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~ 69 (331)
T 2r44_A 27 KVVVGQKY--MINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKT 69 (331)
T ss_dssp TTCCSCHH--HHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHH
T ss_pred cceeCcHH--HHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHH
Confidence 46888865 777777766654 36899999999999999999987
No 127
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.32 E-value=0.0032 Score=53.62 Aligned_cols=36 Identities=22% Similarity=0.238 Sum_probs=28.2
Q ss_pred HHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 118 VKKVWEDLMGDKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 118 ~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
...+...+.......|+|+|.+|+|||||+..+...
T Consensus 26 a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 26 ADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp HHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 334444444556789999999999999999999876
No 128
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.31 E-value=0.0084 Score=66.22 Aligned_cols=84 Identities=13% Similarity=0.180 Sum_probs=56.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHHHhcCCCC-----CCccHHHHHHHH
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAMALKLSLT-----EDEDKVSRARRL 203 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l 203 (359)
..++|.|+|++|+|||+||.++... .. ..=..++|+++...++... ++.++.+.. .....+.....+
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~e-a~--~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~ 1497 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAA-AQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1497 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH-HH--TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH-HH--HcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHH
Confidence 4579999999999999999999877 22 2222478888877766665 445552211 122344555555
Q ss_pred HHHHhcCCcEEEEEecC
Q 038454 204 LGKLKAKKKFVLILDDI 220 (359)
Q Consensus 204 ~~~l~~~k~~LlVlDdv 220 (359)
.+..+..+.-+||+|.+
T Consensus 1498 ~~lvr~~~~~lVVIDsi 1514 (2050)
T 3cmu_A 1498 DALARSGAVDVIVVDSV 1514 (2050)
T ss_dssp HHHHHHTCCSEEEESCG
T ss_pred HHHHhcCCCCEEEEcCh
Confidence 55555547789999998
No 129
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.31 E-value=0.0052 Score=54.34 Aligned_cols=48 Identities=23% Similarity=0.282 Sum_probs=33.6
Q ss_pred cccccccch-HHHHHHHHHHhcCC---------CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 106 TTTLVGENT-KKIVKKVWEDLMGD---------KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 106 ~~~~vGr~~-~~~~~~l~~~l~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
-..++|.+. ...+..+...+... -.+-+.|+|++|+||||||+.+++.
T Consensus 39 ~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 39 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp GGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHH
Confidence 457888876 34445555444321 1123899999999999999999987
No 130
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.31 E-value=0.0018 Score=54.31 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=22.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..+|+|.|++|+||||+|+.+...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999887
No 131
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.30 E-value=0.0019 Score=53.61 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
+.|.|+|++|+|||||++.+..+
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 56899999999999999999876
No 132
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.27 E-value=0.0028 Score=53.58 Aligned_cols=25 Identities=20% Similarity=0.232 Sum_probs=22.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
...+|+|+|++|+|||||++.+...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 4578999999999999999999987
No 133
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.27 E-value=0.0022 Score=53.00 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCc
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNRP 154 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~~ 154 (359)
.+|.|.|++|+||||+|+.+.+.+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999999873
No 134
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.26 E-value=0.0024 Score=52.87 Aligned_cols=24 Identities=25% Similarity=0.212 Sum_probs=22.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..+|.|.|++|+||||+|+.+...
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999887
No 135
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.26 E-value=0.042 Score=49.79 Aligned_cols=58 Identities=21% Similarity=0.267 Sum_probs=36.3
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCC-CcCHHHHHHHHHHHhcC
Q 038454 128 DKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQ-PLDLVKLQAEIAMALKL 188 (359)
Q Consensus 128 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~ 188 (359)
....+++|+|+.|+||||+++.++..+ .. ... .+.++...- .....+.+......++.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l-~~-~~g-~V~l~g~D~~r~~a~eql~~~~~~~gv 185 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL-KN-HGF-SVVIAASDTFRAGAIEQLEEHAKRIGV 185 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH-HH-TTC-CEEEEEECCSSTTHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH-Hh-cCC-EEEEEeecccccchHHHHHHHHHHcCc
Confidence 346799999999999999999998873 21 122 244443322 23344445555566553
No 136
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.25 E-value=0.015 Score=54.64 Aligned_cols=25 Identities=20% Similarity=0.096 Sum_probs=22.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCc
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRP 154 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~ 154 (359)
..++.++|.+|+||||++..++..+
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999998873
No 137
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.25 E-value=0.0028 Score=53.75 Aligned_cols=37 Identities=24% Similarity=0.341 Sum_probs=29.1
Q ss_pred HHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 117 IVKKVWEDLMGDKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 117 ~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..+.+...+.....++|+|+|.+|+|||||+..+...
T Consensus 17 ~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 17 LAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 3444555554556789999999999999999999876
No 138
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.25 E-value=0.0049 Score=55.01 Aligned_cols=27 Identities=26% Similarity=0.057 Sum_probs=23.8
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHcCc
Q 038454 128 DKVTKIGVWGMGGFGKTAIMRHINNRP 154 (359)
Q Consensus 128 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 154 (359)
+...+|+|.|.+|+||||||+.+...+
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999999988773
No 139
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.24 E-value=0.0038 Score=64.40 Aligned_cols=44 Identities=18% Similarity=0.363 Sum_probs=32.4
Q ss_pred cccccchHHHHHHHHHHhcC-------C--CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 108 TLVGENTKKIVKKVWEDLMG-------D--KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 108 ~~vGr~~~~~~~~l~~~l~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.++|.+. .+..+...+.. . ....+.|+|++|+|||++|+.+++.
T Consensus 559 ~viG~~~--a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~ 611 (854)
T 1qvr_A 559 RVVGQDE--AIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT 611 (854)
T ss_dssp HSCSCHH--HHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHH
T ss_pred ccCCcHH--HHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 5788866 55555554421 1 2257999999999999999999987
No 140
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.24 E-value=0.0027 Score=53.04 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=22.8
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 128 DKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 128 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
+...+|+|+|+.|+||||+++.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34678999999999999999998864
No 141
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.23 E-value=0.0023 Score=52.58 Aligned_cols=24 Identities=25% Similarity=0.461 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.++|.|+|++|+||||+++.+.+.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 467899999999999999999877
No 142
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.22 E-value=0.0025 Score=52.66 Aligned_cols=23 Identities=22% Similarity=0.250 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.+|.|.|++|+||||+++.+...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999987
No 143
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.22 E-value=0.0028 Score=61.06 Aligned_cols=43 Identities=14% Similarity=0.196 Sum_probs=35.1
Q ss_pred ccccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 107 TTLVGENTKKIVKKVWEDLMGDKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 107 ~~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..++|.+. .+..+...+..+ .-|.++|++|+|||+||+.+++.
T Consensus 22 ~~ivGq~~--~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 22 KGLYERSH--AIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp TTCSSCHH--HHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGG
T ss_pred hhhHHHHH--HHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHH
Confidence 45888865 777777666655 46899999999999999999987
No 144
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.22 E-value=0.0029 Score=52.28 Aligned_cols=26 Identities=27% Similarity=0.302 Sum_probs=23.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcCc
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNRP 154 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 154 (359)
...+|.|.|++|+||||+++.++..+
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999999873
No 145
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.20 E-value=0.0041 Score=57.34 Aligned_cols=44 Identities=20% Similarity=0.239 Sum_probs=32.8
Q ss_pred cccccchHHHHHHHHHHhc-------------C--CCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 108 TLVGENTKKIVKKVWEDLM-------------G--DKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 108 ~~vGr~~~~~~~~l~~~l~-------------~--~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.++|.+. .++.+...+. . .....+.++|++|+|||++|+.+++.
T Consensus 16 ~i~G~~~--~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 16 YVIGQEQ--AKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp HCCSCHH--HHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hccCHHH--HHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4688865 5666555551 1 13457999999999999999999987
No 146
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.20 E-value=0.0033 Score=51.98 Aligned_cols=25 Identities=32% Similarity=0.351 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
....|+|+|++|+||||+++.+...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999876
No 147
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.19 E-value=0.0027 Score=51.87 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..+|+|+|++|+||||+++.+...
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 468999999999999999999876
No 148
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.18 E-value=0.0027 Score=53.16 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.+++|+|+.|+|||||++.+...
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 68999999999999999999875
No 149
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.14 E-value=0.0026 Score=53.53 Aligned_cols=24 Identities=21% Similarity=0.488 Sum_probs=22.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..+|+|+|++|+|||||++.+...
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999887
No 150
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.14 E-value=0.0029 Score=52.35 Aligned_cols=24 Identities=25% Similarity=0.189 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..+|+|.|++|+||||+|+.+...
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 367999999999999999999876
No 151
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.13 E-value=0.0026 Score=52.05 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
+.|.|.|++|+||||+|+.++..
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 36899999999999999999987
No 152
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.13 E-value=0.0031 Score=53.22 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=22.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
...+|+|+|+.|+|||||++.+...
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4468999999999999999999876
No 153
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.13 E-value=0.0026 Score=52.67 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
++++|+|+.|+|||||++.+...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 57999999999999999999876
No 154
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.12 E-value=0.019 Score=51.33 Aligned_cols=88 Identities=18% Similarity=0.180 Sum_probs=49.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCC-cCHHHHHHHHHHHhcCCC---CCCccHHHHHHHHHH
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQP-LDLVKLQAEIAMALKLSL---TEDEDKVSRARRLLG 205 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~---~~~~~~~~~~~~l~~ 205 (359)
..+++++|.+|+||||++..++..+. . .. ..+.++..... ....+.+.......+.+. ....+.........+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~-~-~g-~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~ 174 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYK-K-KG-FKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVE 174 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHH-H-TT-CCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-H-CC-CeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHH
Confidence 46899999999999999999987732 1 11 23555554332 223333444455554421 112345555555555
Q ss_pred HHhcCCcEEEEEecC
Q 038454 206 KLKAKKKFVLILDDI 220 (359)
Q Consensus 206 ~l~~~k~~LlVlDdv 220 (359)
.+..+.-=++++|-.
T Consensus 175 ~~~~~~~D~ViIDTp 189 (297)
T 1j8m_F 175 KFLSEKMEIIIVDTA 189 (297)
T ss_dssp HHHHTTCSEEEEECC
T ss_pred HHHhCCCCEEEEeCC
Confidence 554213336777763
No 155
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.12 E-value=0.029 Score=56.94 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.+-|.++|++|+|||.||+++++.
T Consensus 511 ~~gvLl~GPPGtGKT~lAkaiA~e 534 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp CSCCEEESSTTSSHHHHHHHHHHT
T ss_pred CceEEEecCCCCCchHHHHHHHHH
Confidence 456889999999999999999998
No 156
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.12 E-value=0.0025 Score=52.54 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
++|.|.|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999886
No 157
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.11 E-value=0.0031 Score=51.09 Aligned_cols=24 Identities=17% Similarity=0.365 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..+|+|.|++|+||||+|+.+...
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999887
No 158
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.11 E-value=0.0032 Score=52.24 Aligned_cols=24 Identities=29% Similarity=0.224 Sum_probs=22.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..+|+|.|++|+||||+|+.+++.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999876
No 159
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.10 E-value=0.0031 Score=52.22 Aligned_cols=23 Identities=17% Similarity=0.309 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.+++|+|++|+|||||++.+...
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcc
Confidence 47899999999999999999764
No 160
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.10 E-value=0.0031 Score=52.69 Aligned_cols=22 Identities=36% Similarity=0.668 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 038454 132 KIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 132 vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.|+|.|+.|+||||+++.+.+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999999987
No 161
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.09 E-value=0.0053 Score=56.12 Aligned_cols=37 Identities=19% Similarity=0.202 Sum_probs=28.1
Q ss_pred HHHHHHHHh----cCCCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 117 IVKKVWEDL----MGDKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 117 ~~~~l~~~l----~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..+.++..+ ..+....|.|+|++|+||||+++.++..
T Consensus 7 L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 7 LADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp HHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 344444444 3556677999999999999999988876
No 162
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.09 E-value=0.0054 Score=54.67 Aligned_cols=25 Identities=28% Similarity=0.246 Sum_probs=22.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
...+|.|.|++|+||||+|+.+...
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999876
No 163
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.08 E-value=0.0032 Score=52.76 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..+|+|+|++|+||||+++.+...
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 368999999999999999999887
No 164
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.07 E-value=0.0054 Score=56.80 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
...+.++|++|+|||++|+.+++.
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999999987
No 165
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.07 E-value=0.0038 Score=52.30 Aligned_cols=25 Identities=28% Similarity=0.276 Sum_probs=22.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
...+|+|.|++|+||||+|+.+++.
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999876
No 166
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.07 E-value=0.046 Score=52.51 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=21.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..++|+|+|.+|+||||++..++..
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~ 124 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYY 124 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999876
No 167
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.07 E-value=0.0031 Score=55.11 Aligned_cols=23 Identities=22% Similarity=0.189 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.+|.|.|++|+||||||+.++..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhc
Confidence 47899999999999999999876
No 168
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.06 E-value=0.0033 Score=52.72 Aligned_cols=22 Identities=27% Similarity=0.518 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHc
Q 038454 131 TKIGVWGMGGFGKTAIMRHINN 152 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~ 152 (359)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999987
No 169
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.05 E-value=0.0065 Score=58.42 Aligned_cols=48 Identities=23% Similarity=0.282 Sum_probs=35.6
Q ss_pred cccccccch-HHHHHHHHHHhcCC---------CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 106 TTTLVGENT-KKIVKKVWEDLMGD---------KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 106 ~~~~vGr~~-~~~~~~l~~~l~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
-..++|.+. ..++.++...+.+. -.+-+.|+|++|+||||||+.+++.
T Consensus 30 f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 30 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred HHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 457889876 45556666665432 1234899999999999999999987
No 170
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.04 E-value=0.003 Score=51.61 Aligned_cols=23 Identities=17% Similarity=0.312 Sum_probs=20.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHc
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINN 152 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~ 152 (359)
..+++|+|+.|+|||||++.++.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 36899999999999999997553
No 171
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.03 E-value=0.0034 Score=53.56 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.+|+|+|++|+||||+++.+...
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999876
No 172
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.02 E-value=0.0036 Score=52.08 Aligned_cols=24 Identities=21% Similarity=0.211 Sum_probs=22.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..+|+|.|++|+||||+|+.+...
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999887
No 173
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.02 E-value=0.0041 Score=52.31 Aligned_cols=24 Identities=25% Similarity=0.481 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..+|+|+|++|+||||+|+.+...
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999876
No 174
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.01 E-value=0.0031 Score=51.22 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.+|.|.|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999887
No 175
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.01 E-value=0.0037 Score=52.53 Aligned_cols=22 Identities=32% Similarity=0.376 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHc
Q 038454 131 TKIGVWGMGGFGKTAIMRHINN 152 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~ 152 (359)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 176
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.00 E-value=0.0043 Score=51.22 Aligned_cols=24 Identities=25% Similarity=0.166 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..+|+|.|++|+||||+|+.+...
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999876
No 177
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.97 E-value=0.004 Score=51.29 Aligned_cols=22 Identities=41% Similarity=0.607 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 038454 132 KIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 132 vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.++|+|+.|+|||||++.++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999876
No 178
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.97 E-value=0.0039 Score=51.36 Aligned_cols=23 Identities=17% Similarity=0.222 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..|+|.|++|+||||+++.+.+.
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999876
No 179
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.96 E-value=0.0048 Score=51.64 Aligned_cols=24 Identities=17% Similarity=0.254 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..+|.|.|++|+||||+|+.+...
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999887
No 180
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.96 E-value=0.0028 Score=51.99 Aligned_cols=24 Identities=29% Similarity=0.311 Sum_probs=17.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..+|.|.|++|+||||+|+.+...
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999876
No 181
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.96 E-value=0.033 Score=53.69 Aligned_cols=51 Identities=10% Similarity=-0.045 Sum_probs=35.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHH
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAM 184 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 184 (359)
-.++.|.|.+|+||||||.+++.... . .+=..++|++... +..++...++.
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a-~-~~g~~vl~~s~E~--s~~~l~~r~~~ 292 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWG-T-AMGKKVGLAMLEE--SVEETAEDLIG 292 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHT-T-TSCCCEEEEESSS--CHHHHHHHHHH
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHH-H-hcCCcEEEEeccC--CHHHHHHHHHH
Confidence 36899999999999999999988721 1 1112477877644 45566555543
No 182
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.95 E-value=0.021 Score=50.98 Aligned_cols=87 Identities=14% Similarity=0.103 Sum_probs=47.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCc-CHHHHHHHHHHHhcCCCC---CCccHHHHHHHHHH
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPL-DLVKLQAEIAMALKLSLT---EDEDKVSRARRLLG 205 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~ 205 (359)
..+++|+|.+|+||||++..++..+. .. . ..+.++...... .....+.......+...- ...+..........
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~-~~-~-~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~ 174 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYK-GK-G-RRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEE 174 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHH-HT-T-CCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-Hc-C-CeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHH
Confidence 47899999999999999999988732 11 1 124555443221 112223344444443211 12344444443334
Q ss_pred HH-hcCCcEEEEEecC
Q 038454 206 KL-KAKKKFVLILDDI 220 (359)
Q Consensus 206 ~l-~~~k~~LlVlDdv 220 (359)
.+ .. ..=++|+|--
T Consensus 175 ~~~~~-~~D~viiDtp 189 (295)
T 1ls1_A 175 KARLE-ARDLILVDTA 189 (295)
T ss_dssp HHHHH-TCCEEEEECC
T ss_pred HHHhC-CCCEEEEeCC
Confidence 43 23 4457778864
No 183
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.94 E-value=0.0042 Score=52.18 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.+|.|.|++|+||||+|+.+...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 57999999999999999999987
No 184
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.94 E-value=0.0041 Score=54.55 Aligned_cols=24 Identities=21% Similarity=0.404 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..+|.|.|++|+||||+|+.+...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999886
No 185
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.93 E-value=0.0035 Score=52.52 Aligned_cols=23 Identities=17% Similarity=0.407 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
++++|+|+.|+|||||++.+...
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 57999999999999999999865
No 186
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.93 E-value=0.0044 Score=53.78 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=22.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
...+|+|+|++|+|||||++.+++.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~ 50 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQN 50 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3579999999999999999999965
No 187
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.91 E-value=0.0041 Score=53.00 Aligned_cols=25 Identities=28% Similarity=0.268 Sum_probs=23.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..++|.|.|++|+||||.|+.++++
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5689999999999999999999987
No 188
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.88 E-value=0.0045 Score=50.01 Aligned_cols=22 Identities=18% Similarity=0.241 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 038454 132 KIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 132 vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.|+|.|++|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999886
No 189
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.86 E-value=0.0047 Score=51.08 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 038454 132 KIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 132 vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
+|+|.|+.|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999987
No 190
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.85 E-value=0.0055 Score=51.11 Aligned_cols=87 Identities=16% Similarity=0.058 Sum_probs=45.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCC---CcCHHHHHHHHHH---HhcC--CCCCC------ccH
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQ---PLDLVKLQAEIAM---ALKL--SLTED------EDK 196 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~---~~~~~~~~~~i~~---~l~~--~~~~~------~~~ 196 (359)
..|.|++..|.||||+|-..+-+. ....+. +.++.... ......++..+.- +++. ..... ...
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA--~g~G~r-V~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a 105 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARA--VGHGKN-VGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAAC 105 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHH--HHTTCC-EEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH--HHCCCe-EEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHH
Confidence 567777778899999999888772 223333 55554433 2334444444310 0000 11110 011
Q ss_pred HHHHHHHHHHHhcCCcEEEEEecC
Q 038454 197 VSRARRLLGKLKAKKKFVLILDDI 220 (359)
Q Consensus 197 ~~~~~~l~~~l~~~k~~LlVlDdv 220 (359)
........+.+..++-=|||||++
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi 129 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDEL 129 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETH
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCC
Confidence 223344445555535559999998
No 191
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.85 E-value=0.0059 Score=53.25 Aligned_cols=25 Identities=32% Similarity=0.325 Sum_probs=22.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
...+|.|.|++|+||||+|+.+...
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999999887
No 192
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.84 E-value=0.005 Score=51.79 Aligned_cols=25 Identities=16% Similarity=0.036 Sum_probs=22.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCc
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRP 154 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~ 154 (359)
..+|+|.|+.|+||||+++.+.+.+
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999873
No 193
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.83 E-value=0.032 Score=52.44 Aligned_cols=26 Identities=15% Similarity=0.187 Sum_probs=23.4
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 128 DKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 128 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
....+|.|+|++|+||||+|+.++.+
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 35689999999999999999999887
No 194
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.82 E-value=0.0051 Score=52.29 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
...|.|.|++|+||||+|+.++..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999999887
No 195
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.81 E-value=0.0052 Score=51.77 Aligned_cols=25 Identities=20% Similarity=0.148 Sum_probs=22.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCc
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRP 154 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~ 154 (359)
..+|+|.|+.|+||||+|+.+.+.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999873
No 196
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.80 E-value=0.0054 Score=50.01 Aligned_cols=26 Identities=23% Similarity=0.201 Sum_probs=22.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcCc
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNRP 154 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 154 (359)
..++++|.|..|+|||||+..+...+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhh
Confidence 35789999999999999999998873
No 197
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.80 E-value=0.0051 Score=53.58 Aligned_cols=26 Identities=27% Similarity=0.264 Sum_probs=22.8
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 128 DKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 128 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
....+|+|.|++|+||||+|+.+...
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999886
No 198
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=95.80 E-value=0.0052 Score=55.54 Aligned_cols=40 Identities=18% Similarity=0.267 Sum_probs=28.5
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeC
Q 038454 128 DKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVS 170 (359)
Q Consensus 128 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~ 170 (359)
++.+||+|.|-||+||||.+..++.-+.+ ..+ .+.-|++.
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~--~Gk-kVllID~D 85 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSI--LGK-RVLQIGCD 85 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHH--TTC-CEEEEEES
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHH--CCC-eEEEEecC
Confidence 46799999999999999999988776422 222 25555554
No 199
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.79 E-value=0.0056 Score=51.25 Aligned_cols=25 Identities=16% Similarity=0.320 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..++|+|+|++|+|||||++.+...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 3578999999999999999999876
No 200
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.78 E-value=0.0053 Score=51.71 Aligned_cols=24 Identities=21% Similarity=0.376 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
-.+++|+|+.|+|||||++.+..-
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 368999999999999999999876
No 201
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.78 E-value=0.0053 Score=51.27 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
...+|+|+|+.|+||||+++.+...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 3578999999999999999999876
No 202
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.75 E-value=0.0059 Score=50.99 Aligned_cols=24 Identities=25% Similarity=0.133 Sum_probs=22.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
...|+|.|+.|+||||+++.+.+.
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 368999999999999999999988
No 203
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.74 E-value=0.1 Score=47.37 Aligned_cols=133 Identities=10% Similarity=0.003 Sum_probs=78.2
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHH
Q 038454 128 DKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAMALKLSLTEDEDKVSRARRLLGKL 207 (359)
Q Consensus 128 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 207 (359)
.-.++..++|..|.||++.+..+.+.+ ....|+....+.+....++.++...+-.. -+
T Consensus 16 ~~~~~yl~~G~e~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------------------pl 73 (343)
T 1jr3_D 16 GLRAAYLLLGNDPLLLQESQDAVRQVA--AAQGFEEHHTFSIDPNTDWNAIFSLCQAM--------------------SL 73 (343)
T ss_dssp CCCSEEEEEESCHHHHHHHHHHHHHHH--HHHTCCEEEEEECCTTCCHHHHHHHHHHH--------------------HH
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHHHH--HhCCCCeeEEEEecCCCCHHHHHHHhcCc--------------------CC
Confidence 446799999999999999999998863 12234322222333445565554443211 01
Q ss_pred hcCCcEEEEEecC-------------------CCC-eEEEee-c--------------ccceeeeecCCCChHHHHHHHH
Q 038454 208 KAKKKFVLILDDI-------------------DNH-TFCWGL-R--------------SMGCEEVRVPPLSKEEALNLFL 252 (359)
Q Consensus 208 ~~~k~~LlVlDdv-------------------~~g-~ilvTt-r--------------~~~~~~~~l~~L~~~ea~~lf~ 252 (359)
-+ ++-++|+|++ .++ .+|+++ . ...+..+...+++.++....+.
T Consensus 74 f~-~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~ 152 (343)
T 1jr3_D 74 FA-SRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVA 152 (343)
T ss_dssp CC-SCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHH
T ss_pred cc-CCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHH
Confidence 11 3334444443 123 333332 1 2234678899999999988887
Q ss_pred HhhcCCCCCCCCchHHHHHHHHHHcCCchhHHHH
Q 038454 253 DKVGRNILHVPTLNEEIINSVVEECAGLQLAIFT 286 (359)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~ 286 (359)
..+-..+. .-..+.+..+++.++|.+..+..
T Consensus 153 ~~~~~~g~---~i~~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 153 ARAKQLNL---ELDDAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp HHHHHTTC---EECHHHHHHHHHSSTTCHHHHHH
T ss_pred HHHHHcCC---CCCHHHHHHHHHHhchHHHHHHH
Confidence 77633221 12246678888999998877765
No 204
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.74 E-value=0.021 Score=63.12 Aligned_cols=83 Identities=13% Similarity=0.190 Sum_probs=56.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHHHhcCCCC-----CCccHHHHHHHHH
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAMALKLSLT-----EDEDKVSRARRLL 204 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 204 (359)
-.++.|+|.+|+||||||.+++... . ..=..++|++....++... ++.++.+.. +..+.++....+.
T Consensus 383 G~lilI~G~pGsGKTtLaLqia~~~-a--~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~ 454 (2050)
T 3cmu_A 383 GRIVEIYGPESSGKTTLTLQVIAAA-Q--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 454 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHH-H--TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHH-H--hcCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHH
Confidence 4699999999999999999998873 2 2223588998877766542 455655321 2345556655555
Q ss_pred HHHhcCCcEEEEEecC
Q 038454 205 GKLKAKKKFVLILDDI 220 (359)
Q Consensus 205 ~~l~~~k~~LlVlDdv 220 (359)
......+.-+||+|.+
T Consensus 455 ~lv~~~~~~lIVIDSL 470 (2050)
T 3cmu_A 455 ALARSGAVDVIVVDSV 470 (2050)
T ss_dssp HHHHHTCCSEEEESCG
T ss_pred HHHHhcCCcEEEECCH
Confidence 5444436679999988
No 205
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.72 E-value=0.0056 Score=52.36 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
...|.|.|++|+||||+|+.++..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999999877
No 206
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.72 E-value=0.014 Score=55.64 Aligned_cols=39 Identities=21% Similarity=0.290 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHcCc
Q 038454 115 KKIVKKVWEDLMGDKVTKIGVWGMGGFGKTAIMRHINNRP 154 (359)
Q Consensus 115 ~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 154 (359)
.+.+..+..++.++. +.+.|.|.+|+|||+++..+...+
T Consensus 31 ~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 31 KNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp HHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHH
Confidence 445666666766654 489999999999999999998874
No 207
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.70 E-value=0.005 Score=52.08 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 038454 132 KIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 132 vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.|+|.|++|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999876
No 208
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=95.69 E-value=0.0017 Score=59.92 Aligned_cols=52 Identities=17% Similarity=0.160 Sum_probs=34.0
Q ss_pred HHHHHhcC-CCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCC
Q 038454 120 KVWEDLMG-DKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQP 172 (359)
Q Consensus 120 ~l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~ 172 (359)
+.++.+.. +.-..++|+|.+|+|||+|+..+++........+.+ +++-+++.
T Consensus 164 raID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~-V~~lIGER 216 (427)
T 3l0o_A 164 RLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIR-IILLIDER 216 (427)
T ss_dssp HHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEE-EEEECSCC
T ss_pred hhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeEE-EEEEeccC
Confidence 45555543 334678999999999999999998873211233333 45666654
No 209
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.69 E-value=0.0059 Score=50.64 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCc
Q 038454 132 KIGVWGMGGFGKTAIMRHINNRP 154 (359)
Q Consensus 132 vi~I~G~gGiGKTtLa~~v~~~~ 154 (359)
.|+|.|+.|+||||+++.+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999873
No 210
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.68 E-value=0.018 Score=62.82 Aligned_cols=83 Identities=12% Similarity=0.176 Sum_probs=55.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHHHhcCCCC-----CCccHHHHHHHHH
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAMALKLSLT-----EDEDKVSRARRLL 204 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 204 (359)
-+++.|.|.+|+||||||.+++... ... =..++|++....++... +..++.+.. ...+.++....+.
T Consensus 383 G~lilI~G~pGsGKTtLaLq~a~~~-~~~--G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~i~~~~~~e~~l~~l~ 454 (1706)
T 3cmw_A 383 GRIVEIYGPESSGKTTLTLQVIAAA-QRE--GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 454 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHH-HHT--TCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHH-HHh--CCCeEEEEccCchHHHH-----HHHcCCCHHHeEEcCCCCHHHHHHHHH
Confidence 4789999999999999999998872 222 23588998887776542 455554321 1234555555555
Q ss_pred HHHhcCCcEEEEEecC
Q 038454 205 GKLKAKKKFVLILDDI 220 (359)
Q Consensus 205 ~~l~~~k~~LlVlDdv 220 (359)
......+.-++|+|.+
T Consensus 455 ~lv~~~~~~lVVIDSL 470 (1706)
T 3cmw_A 455 ALARSGAVDVIVVDSV 470 (1706)
T ss_dssp HHHHHTCCSEEEESCS
T ss_pred HHHHhcCCCEEEECCH
Confidence 4444436669999998
No 211
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.67 E-value=0.0053 Score=52.31 Aligned_cols=24 Identities=21% Similarity=0.492 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
-.+++|+|+.|+|||||++.+...
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 368999999999999999999876
No 212
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.67 E-value=0.0065 Score=54.83 Aligned_cols=26 Identities=27% Similarity=0.242 Sum_probs=23.1
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 128 DKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 128 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
....+|+|.|+.|+|||||++.+..-
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhh
Confidence 34579999999999999999999876
No 213
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.65 E-value=0.0087 Score=54.14 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.+.+|+|.|+.|+|||||++.+..-
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4569999999999999999998765
No 214
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.64 E-value=0.0068 Score=52.54 Aligned_cols=25 Identities=28% Similarity=0.303 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
...+|+|.|+.|+|||||++.+...
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999998875
No 215
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.63 E-value=0.006 Score=51.92 Aligned_cols=24 Identities=21% Similarity=0.203 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
...|.|.|++|+||||+|+.++..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999987
No 216
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.63 E-value=0.019 Score=49.35 Aligned_cols=49 Identities=20% Similarity=0.195 Sum_probs=31.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHH
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEI 182 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 182 (359)
-.++.|.|.+|+|||+||.+++.+ . ....-..++|++... +..++...+
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~-~-~~~~~~~v~~~s~E~--~~~~~~~~~ 78 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYK-G-AEEYGEPGVFVTLEE--RARDLRREM 78 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHH-H-HHHHCCCEEEEESSS--CHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH-H-HHhcCCCceeecccC--CHHHHHHHH
Confidence 368999999999999999987654 1 111122466666543 344444443
No 217
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.62 E-value=0.0056 Score=51.80 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 038454 132 KIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 132 vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.|+|.|++|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999876
No 218
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.60 E-value=0.0077 Score=54.12 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=22.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
...+++|+|++|+|||||+..++..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3579999999999999999999876
No 219
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.60 E-value=0.0066 Score=52.93 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..+|+|+|+.|+||||+++.++..
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~ 50 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAES 50 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999855
No 220
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.58 E-value=0.008 Score=50.46 Aligned_cols=37 Identities=16% Similarity=0.057 Sum_probs=27.4
Q ss_pred HHHHHHHHhcCC-CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 117 IVKKVWEDLMGD-KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 117 ~~~~l~~~l~~~-~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
-+..+..++..- ....+.|+|++|+||||+|..+++.
T Consensus 44 f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 44 FLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp HHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHH
Confidence 344555555431 2347999999999999999999887
No 221
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=95.57 E-value=0.0063 Score=57.49 Aligned_cols=45 Identities=24% Similarity=0.301 Sum_probs=32.2
Q ss_pred ccccccchHHHHHHHHHHhcC--------------CCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 107 TTLVGENTKKIVKKVWEDLMG--------------DKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 107 ~~~vGr~~~~~~~~l~~~l~~--------------~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..++|.+. .+..+...+.+ -..+-|.++|++|+||||+|+.++..
T Consensus 15 ~~IvGqe~--ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~ 73 (444)
T 1g41_A 15 QHIIGQAD--AKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (444)
T ss_dssp TTCCSCHH--HHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCCHHH--HHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHH
Confidence 46788765 44444433311 13456999999999999999999987
No 222
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=95.56 E-value=0.021 Score=54.34 Aligned_cols=86 Identities=16% Similarity=0.140 Sum_probs=51.7
Q ss_pred ccEEEEEcCCCCcHHHHHH-HHHcCcccccCCCcc-EEEEEeCCCc-CHHHHHHHHHHHhcC-------CCCCCccHHHH
Q 038454 130 VTKIGVWGMGGFGKTAIMR-HINNRPQEETNEFSD-VIWVTVSQPL-DLVKLQAEIAMALKL-------SLTEDEDKVSR 199 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~-~v~~~~~~~~~~F~~-~~wv~~~~~~-~~~~~~~~i~~~l~~-------~~~~~~~~~~~ 199 (359)
-..++|.|.+|+|||+||. .+++. . .-+. ++++-+++.. ...++.+.+...=.. ...+.......
T Consensus 162 GQR~~Ifg~~g~GKT~Lal~~I~~~-~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~ 236 (502)
T 2qe7_A 162 GQRELIIGDRQTGKTTIAIDTIINQ-K----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLY 236 (502)
T ss_dssp TCBCEEEECSSSCHHHHHHHHHHGG-G----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHH
T ss_pred CCEEEEECCCCCCchHHHHHHHHHh-h----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHH
Confidence 3568999999999999964 67776 2 2343 5677777765 455666666542111 11111111111
Q ss_pred -----HHHHHHHHhc-CCcEEEEEecC
Q 038454 200 -----ARRLLGKLKA-KKKFVLILDDI 220 (359)
Q Consensus 200 -----~~~l~~~l~~-~k~~LlVlDdv 220 (359)
.-.+.++++. ++.+||++||+
T Consensus 237 ~a~~~a~tiAEyfrd~G~dVLl~~Dsl 263 (502)
T 2qe7_A 237 LAPYAGCAMGEYFMYKGKHALVVYDDL 263 (502)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEEecH
Confidence 1234455544 58999999999
No 223
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=95.56 E-value=0.023 Score=54.21 Aligned_cols=85 Identities=16% Similarity=0.193 Sum_probs=51.5
Q ss_pred cEEEEEcCCCCcHHHHHH-HHHcCcccccCCCcc-EEEEEeCCCc-CHHHHHHHHHHHhcC-------CCCCCccHHHH-
Q 038454 131 TKIGVWGMGGFGKTAIMR-HINNRPQEETNEFSD-VIWVTVSQPL-DLVKLQAEIAMALKL-------SLTEDEDKVSR- 199 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~-~v~~~~~~~~~~F~~-~~wv~~~~~~-~~~~~~~~i~~~l~~-------~~~~~~~~~~~- 199 (359)
..++|.|.+|+|||+||. .+++. . .-+. ++++-+++.. ...++.+.+...=.. ...+.......
T Consensus 176 QR~~I~g~~g~GKT~Lal~~I~~~-~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~ 250 (515)
T 2r9v_A 176 QRELIIGDRQTGKTAIAIDTIINQ-K----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYI 250 (515)
T ss_dssp CBEEEEEETTSSHHHHHHHHHHTT-T----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHH
T ss_pred CEEEEEcCCCCCccHHHHHHHHHh-h----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHH
Confidence 568999999999999964 67776 2 2443 5677777764 455666666542111 11111111111
Q ss_pred ----HHHHHHHHhc-CCcEEEEEecC
Q 038454 200 ----ARRLLGKLKA-KKKFVLILDDI 220 (359)
Q Consensus 200 ----~~~l~~~l~~-~k~~LlVlDdv 220 (359)
.-.+.++++. ++.+||++||+
T Consensus 251 a~~~a~tiAEyfrd~G~dVLli~Dsl 276 (515)
T 2r9v_A 251 APYAGCAMGEYFAYSGRDALVVYDDL 276 (515)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred HHHHHHHHHHHHHHcCCcEEEEeccH
Confidence 2234455544 58999999999
No 224
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.53 E-value=0.0085 Score=53.19 Aligned_cols=24 Identities=25% Similarity=0.590 Sum_probs=21.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHc
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINN 152 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~ 152 (359)
...+|+|.|++|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999983
No 225
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.53 E-value=0.0074 Score=51.47 Aligned_cols=24 Identities=21% Similarity=0.191 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
-.+++|+|+.|+|||||.+.+...
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc
Confidence 368999999999999999999876
No 226
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.52 E-value=0.0075 Score=49.36 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..+|+|.|+.|+||||+++.+...
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 367999999999999999999886
No 227
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.51 E-value=0.0077 Score=52.20 Aligned_cols=25 Identities=16% Similarity=0.130 Sum_probs=22.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
....|+|.|++|+||||+|+.+.+.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999876
No 228
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.50 E-value=0.0082 Score=48.38 Aligned_cols=25 Identities=28% Similarity=0.264 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.-.+++|+|+.|+|||||++.++.-
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999876
No 229
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.50 E-value=0.0037 Score=52.69 Aligned_cols=24 Identities=21% Similarity=0.397 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCc
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNRP 154 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~~ 154 (359)
.+|+|.|+.|+||||+++.+...+
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 368999999999999999998773
No 230
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.47 E-value=0.0082 Score=50.87 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHc
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINN 152 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~ 152 (359)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999875
No 231
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.45 E-value=0.008 Score=51.84 Aligned_cols=24 Identities=25% Similarity=0.224 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
-.+++|+|++|+|||||++.++..
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~~ 53 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHH
Confidence 368999999999999999998843
No 232
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.42 E-value=0.011 Score=49.99 Aligned_cols=26 Identities=15% Similarity=0.305 Sum_probs=23.0
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 128 DKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 128 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
....+|.|.|+.|+||||+++.+...
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999999887
No 233
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.42 E-value=0.0049 Score=55.05 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=19.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
+..+|+|.|..|+||||+|+.+.+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999876
No 234
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.42 E-value=0.017 Score=53.02 Aligned_cols=36 Identities=17% Similarity=0.456 Sum_probs=27.9
Q ss_pred HHHHHHHhc--CCCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 118 VKKVWEDLM--GDKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 118 ~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
...++..+. .++..+|+|+|.+|+|||||+..+...
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 334444443 456789999999999999999998866
No 235
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=95.40 E-value=0.028 Score=52.89 Aligned_cols=89 Identities=12% Similarity=0.188 Sum_probs=53.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCccccc-CCCc-cEEEEEeCCCc-CHHHHHHHHHHH--hcC-----CCCCCccHHH--
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNRPQEET-NEFS-DVIWVTVSQPL-DLVKLQAEIAMA--LKL-----SLTEDEDKVS-- 198 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~F~-~~~wv~~~~~~-~~~~~~~~i~~~--l~~-----~~~~~~~~~~-- 198 (359)
..++|.|.+|+|||+|+.++++. .... ++-+ .++++-+++.. ...++.+++... +.. ...+......
T Consensus 152 Qr~~Ifgg~G~GKt~L~~~Ia~~-~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~ 230 (465)
T 3vr4_D 152 QKLPVFSGSGLPHKELAAQIARQ-ATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIA 230 (465)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHH-CBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHH
T ss_pred CEEEEeCCCCcChHHHHHHHHHH-HHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHH
Confidence 44789999999999999999987 3321 1111 46677676654 456666665543 110 1111111111
Q ss_pred ---HHHHHHHHHhc--CCcEEEEEecC
Q 038454 199 ---RARRLLGKLKA--KKKFVLILDDI 220 (359)
Q Consensus 199 ---~~~~l~~~l~~--~k~~LlVlDdv 220 (359)
..-.+.++++. ++.+||++||+
T Consensus 231 a~~~a~tiAEyfrd~~G~~VLl~~Dsl 257 (465)
T 3vr4_D 231 TPRMALTAAEYLAYEKGMHVLVIMTDM 257 (465)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 12335566663 58999999999
No 236
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.38 E-value=0.027 Score=61.52 Aligned_cols=83 Identities=13% Similarity=0.181 Sum_probs=61.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHHHhcCCCC-----CCccHHHHHHHHH
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAMALKLSLT-----EDEDKVSRARRLL 204 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 204 (359)
-++|-|+|+.|+||||||.++... . ...=..++|+...+..+..- ++.++.+.. ...+.++.+..+.
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a~-~--~~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~~ 1502 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIAA-A--QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1502 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHH-H--HHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH-H--HhcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHHH
Confidence 479999999999999999999876 2 22224588998887777664 667766432 2345566677777
Q ss_pred HHHhcCCcEEEEEecC
Q 038454 205 GKLKAKKKFVLILDDI 220 (359)
Q Consensus 205 ~~l~~~k~~LlVlDdv 220 (359)
..++.+..-++|+|.|
T Consensus 1503 ~~~~s~~~~~vvvDsv 1518 (1706)
T 3cmw_A 1503 ALARSGAVDVIVVDSV 1518 (1706)
T ss_dssp HHHHHTCCSEEEESCS
T ss_pred HHHHcCCCCEEEEccH
Confidence 7777767789999998
No 237
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.36 E-value=0.0076 Score=52.51 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.+|+|+|++|+||||+++.++..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999986
No 238
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.36 E-value=0.006 Score=52.32 Aligned_cols=24 Identities=17% Similarity=0.211 Sum_probs=16.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHH-cC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHIN-NR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~-~~ 153 (359)
-.+++|+|+.|+|||||++.+. ..
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC--
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcC
Confidence 3689999999999999999998 54
No 239
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.35 E-value=0.009 Score=49.96 Aligned_cols=23 Identities=17% Similarity=0.306 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
++|+|.|+.|+||||+|+.+...
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 38999999999999999999886
No 240
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.27 E-value=0.011 Score=53.66 Aligned_cols=25 Identities=16% Similarity=0.198 Sum_probs=22.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCc
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRP 154 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~ 154 (359)
.++|.|+|+.|+||||||..++..+
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC
Confidence 3689999999999999999999884
No 241
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.25 E-value=0.011 Score=48.47 Aligned_cols=24 Identities=17% Similarity=0.356 Sum_probs=22.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.++++|+|..|+|||||+..+...
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 578999999999999999999876
No 242
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.25 E-value=0.0089 Score=49.72 Aligned_cols=23 Identities=22% Similarity=0.354 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.+++|+|+.|+|||||++.++..
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhh
Confidence 36899999999999999999876
No 243
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=95.24 E-value=0.011 Score=58.34 Aligned_cols=43 Identities=14% Similarity=0.228 Sum_probs=35.5
Q ss_pred ccccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 107 TTLVGENTKKIVKKVWEDLMGDKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 107 ~~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..++|.+. .++.+...+..+ ..+.|+|++|+||||||+.++..
T Consensus 41 ~~i~G~~~--~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 41 DQVIGQEH--AVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HHCCSCHH--HHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHT
T ss_pred ceEECchh--hHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhcc
Confidence 46888855 777776666666 57999999999999999999987
No 244
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.23 E-value=0.006 Score=49.90 Aligned_cols=23 Identities=17% Similarity=0.286 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
++++|+|..|+|||||++.+..-
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999876
No 245
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.22 E-value=0.01 Score=50.13 Aligned_cols=22 Identities=23% Similarity=0.237 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 038454 132 KIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 132 vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.|.|.|++|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999887
No 246
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.22 E-value=0.025 Score=48.70 Aligned_cols=52 Identities=13% Similarity=0.153 Sum_probs=33.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHH
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIA 183 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 183 (359)
...|.|.|+.|+||||+++.+.+.+ ...++..+....-.....+.+.+++++
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l--~~~~~~~~~~~rep~~t~~g~~ir~~l 78 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETL--QQNGIDHITRTREPGGTLLAEKLRALV 78 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHH--HHTTCCCEEEEESSCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH--HhcCCCeeeeecCCCCCHHHHHHHHHH
Confidence 4689999999999999999999884 234555444444333323344444443
No 247
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.21 E-value=0.0091 Score=50.65 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..|.|.|++|+||||+|+.++..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999887
No 248
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.21 E-value=0.011 Score=53.17 Aligned_cols=26 Identities=19% Similarity=0.162 Sum_probs=22.9
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 128 DKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 128 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
....+|+|+|..|+|||||++.+...
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34579999999999999999999876
No 249
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.20 E-value=0.012 Score=50.91 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=22.4
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 128 DKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 128 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.. .+++|+|+.|+|||||.+.++.-
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCC
Confidence 35 78999999999999999999875
No 250
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.19 E-value=0.0096 Score=50.25 Aligned_cols=22 Identities=18% Similarity=0.265 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 038454 132 KIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 132 vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
+|.|.|++|+||||.|+.++++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999988
No 251
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.17 E-value=0.055 Score=51.23 Aligned_cols=39 Identities=13% Similarity=0.059 Sum_probs=28.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQ 171 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~ 171 (359)
-.++.|.|.+|+||||||.+++... ... . ..++|++...
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~-a~~-g-~~vl~fSlEm 235 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNM-SDN-D-DVVNLHSLEM 235 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHH-HHT-T-CEEEEECSSS
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHH-HHc-C-CEEEEEECCC
Confidence 3689999999999999999998873 222 1 2477776543
No 252
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.16 E-value=0.011 Score=50.42 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 038454 132 KIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 132 vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.|.|.|++|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999887
No 253
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.14 E-value=0.012 Score=52.74 Aligned_cols=25 Identities=20% Similarity=0.218 Sum_probs=22.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCc
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRP 154 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~ 154 (359)
.++|.|.|+.|+||||||..++..+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3689999999999999999999873
No 254
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.14 E-value=0.01 Score=51.14 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
-.+++|+|+.|+|||||.+.+..-
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 368999999999999999998875
No 255
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.13 E-value=0.011 Score=53.74 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.+|+|.|++|+||||||..++..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 58999999999999999999987
No 256
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.12 E-value=0.012 Score=50.64 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..+|.|.|++|+||||+|+.+...
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999876
No 257
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.12 E-value=0.011 Score=50.69 Aligned_cols=23 Identities=17% Similarity=0.335 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.+++|+|+.|+|||||.+.++.-
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 68999999999999999999875
No 258
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.11 E-value=0.029 Score=47.53 Aligned_cols=52 Identities=17% Similarity=0.213 Sum_probs=34.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHH
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAM 184 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 184 (359)
..|.+.|..|+||||+++.+.+.+ ....+..+.+..-.....+.+.+++++.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l--~~~~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETL--EQLGIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHH--HHTTCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH--HHcCCCcceeeeCCCCCHHHHHHHHHHh
Confidence 579999999999999999999884 2334433444433333335555666554
No 259
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.10 E-value=0.013 Score=50.22 Aligned_cols=24 Identities=17% Similarity=0.187 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
...|.|.|++|+||||+|+.+++.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999987
No 260
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.08 E-value=0.013 Score=52.48 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=22.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..+++|+|+.|+||||+++.++..
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 469999999999999999999887
No 261
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.08 E-value=0.012 Score=52.58 Aligned_cols=23 Identities=26% Similarity=0.274 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.+|.|.|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999875
No 262
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.08 E-value=0.029 Score=49.87 Aligned_cols=50 Identities=14% Similarity=0.109 Sum_probs=32.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHH
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIA 183 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 183 (359)
-.+++|.|.+|+|||||++.++... ..... ..++|++... +..++...+.
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~-~~~~G-~~v~~~~~e~--~~~~~~~r~~ 84 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQW-GTAMG-KKVGLAMLEE--SVEETAEDLI 84 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHH-HHTSC-CCEEEEESSS--CHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHH-HHHcC-CeEEEEeCcC--CHHHHHHHHH
Confidence 3689999999999999999998873 21111 1366665433 3344444433
No 263
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.03 E-value=0.01 Score=50.10 Aligned_cols=23 Identities=26% Similarity=0.138 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.+++|+|+.|+|||||++.++.-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999998764
No 264
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.02 E-value=0.011 Score=53.41 Aligned_cols=23 Identities=22% Similarity=0.238 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
++|.|+|+.|+||||||..++..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999987
No 265
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=95.02 E-value=0.037 Score=52.76 Aligned_cols=89 Identities=19% Similarity=0.224 Sum_probs=52.3
Q ss_pred cEEEEEcCCCCcHHHHH-HHHHcCcccc----cCCCc-cEEEEEeCCCc-CHHHHHHHHHHHhcC-------CCCCCccH
Q 038454 131 TKIGVWGMGGFGKTAIM-RHINNRPQEE----TNEFS-DVIWVTVSQPL-DLVKLQAEIAMALKL-------SLTEDEDK 196 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa-~~v~~~~~~~----~~~F~-~~~wv~~~~~~-~~~~~~~~i~~~l~~-------~~~~~~~~ 196 (359)
..++|.|.+|+|||+|| ..+.+. ... .++-+ .++++-+++.. ...++.+.+...=.. ...+....
T Consensus 163 QR~~I~g~~g~GKT~Lal~~I~~q-~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~ 241 (510)
T 2ck3_A 163 QRELIIGDRQTGKTSIAIDTIINQ-KRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAP 241 (510)
T ss_dssp CBCEEEESTTSSHHHHHHHHHHHT-HHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEEEEECTTSCHH
T ss_pred CEEEEecCCCCCchHHHHHHHHHH-HhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceEEEECCCCCHH
Confidence 56899999999999995 467776 221 12344 36777787765 455666666542111 11111111
Q ss_pred HHH-----HHHHHHHHhc-CCcEEEEEecC
Q 038454 197 VSR-----ARRLLGKLKA-KKKFVLILDDI 220 (359)
Q Consensus 197 ~~~-----~~~l~~~l~~-~k~~LlVlDdv 220 (359)
... .-.+.++++. ++.+||++||+
T Consensus 242 ~r~~a~~~a~tiAEyfrd~G~dVLli~Dsl 271 (510)
T 2ck3_A 242 LQYLAPYSGCSMGEYFRDNGKHALIIYDDL 271 (510)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred HHHHHHHHHHHHHHHHHHcCCcEEEEEcCH
Confidence 111 1234455544 58999999999
No 266
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.98 E-value=0.014 Score=48.22 Aligned_cols=24 Identities=21% Similarity=0.451 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
...|+|+|.+|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 467999999999999999999876
No 267
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.97 E-value=0.015 Score=46.00 Aligned_cols=23 Identities=17% Similarity=0.407 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
+.|.|+|.+|+|||||+..+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999876
No 268
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=94.95 E-value=0.016 Score=46.59 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999875
No 269
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.95 E-value=0.013 Score=50.63 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
-.+++|+|+.|+|||||++.++.-
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999999876
No 270
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=94.94 E-value=0.023 Score=53.55 Aligned_cols=89 Identities=17% Similarity=0.222 Sum_probs=53.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCccccc--------CCCc-cEEEEEeCCCc-CHHHHHHHHHHH--hcC-----CCCCC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNRPQEET--------NEFS-DVIWVTVSQPL-DLVKLQAEIAMA--LKL-----SLTED 193 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------~~F~-~~~wv~~~~~~-~~~~~~~~i~~~--l~~-----~~~~~ 193 (359)
..++|.|.+|+|||+|+.++++. .... ++-+ .++++-+++.. ...++.+++... +.. ...+.
T Consensus 148 Qr~~Ifgg~G~GKt~L~~~Ia~~-~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~ 226 (464)
T 3gqb_B 148 QKLPIFSGSGLPANEIAAQIARQ-ATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADD 226 (464)
T ss_dssp CBCCEEEETTSCHHHHHHHHHHH-CBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTS
T ss_pred CEEEEecCCCCCchHHHHHHHHH-HHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCC
Confidence 45789999999999999999887 3321 1222 46667676654 455666655442 110 11111
Q ss_pred ccHHH-----HHHHHHHHHhc--CCcEEEEEecC
Q 038454 194 EDKVS-----RARRLLGKLKA--KKKFVLILDDI 220 (359)
Q Consensus 194 ~~~~~-----~~~~l~~~l~~--~k~~LlVlDdv 220 (359)
..... ..-.+.++++. ++.+||++||+
T Consensus 227 p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~Ddl 260 (464)
T 3gqb_B 227 PTIERILTPRMALTVAEYLAFEHDYHVLVILTDM 260 (464)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 12211 22344566663 58999999999
No 271
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=94.93 E-value=0.029 Score=53.46 Aligned_cols=85 Identities=16% Similarity=0.174 Sum_probs=49.5
Q ss_pred cEEEEEcCCCCcHHHHH-HHHHcCcccccCCCc-cEEEEEeCCCc-CHHHHHHHHHHHhcC--------CCCC----Ccc
Q 038454 131 TKIGVWGMGGFGKTAIM-RHINNRPQEETNEFS-DVIWVTVSQPL-DLVKLQAEIAMALKL--------SLTE----DED 195 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~~F~-~~~wv~~~~~~-~~~~~~~~i~~~l~~--------~~~~----~~~ 195 (359)
..++|.|.+|+|||+|| ..+++. . . -+ .++++-+++.. ...++.+.+...=.. ..++ ..-
T Consensus 164 QR~~Ifg~~g~GKT~Lal~~I~~~-~--~--~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~ 238 (507)
T 1fx0_A 164 QRELIIGDRQTGKTAVATDTILNQ-Q--G--QNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYL 238 (507)
T ss_dssp CBCBEEESSSSSHHHHHHHHHHTC-C--T--TTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTH
T ss_pred CEEEEecCCCCCccHHHHHHHHHh-h--c--CCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHH
Confidence 56899999999999996 477776 2 2 34 35677777764 345555555432110 1111 011
Q ss_pred HHHHHHHHHHHHhc-CCcEEEEEecC
Q 038454 196 KVSRARRLLGKLKA-KKKFVLILDDI 220 (359)
Q Consensus 196 ~~~~~~~l~~~l~~-~k~~LlVlDdv 220 (359)
.....-.+.++++. ++.+||++||+
T Consensus 239 a~~~a~tiAEyfrd~G~dVLli~Dsl 264 (507)
T 1fx0_A 239 APYTGAALAEYFMYRERHTLIIYDDL 264 (507)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHcCCcEEEEEecH
Confidence 12222333444433 49999999998
No 272
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=94.90 E-value=0.015 Score=50.51 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..++.+.|.||+||||++..++..
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~ 37 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRY 37 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHH
Confidence 578999999999999999999866
No 273
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.89 E-value=0.013 Score=51.41 Aligned_cols=24 Identities=33% Similarity=0.441 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
-.+++|+|+.|+|||||.+.++.-
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999999865
No 274
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.88 E-value=0.015 Score=48.51 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
+.|.|.|++|+||||||..+..+
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 67999999999999999999987
No 275
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.87 E-value=0.013 Score=51.75 Aligned_cols=23 Identities=22% Similarity=0.472 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.+++|+|+.|+|||||++.+..-
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 68999999999999999999765
No 276
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.87 E-value=0.026 Score=48.40 Aligned_cols=25 Identities=28% Similarity=0.357 Sum_probs=22.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCc
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRP 154 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~ 154 (359)
...|+|.|++|+||||+++.+.+.+
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999884
No 277
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.87 E-value=0.013 Score=48.05 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 038454 132 KIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 132 vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
-|+|+|.+|+|||||+..+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 278
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.87 E-value=0.03 Score=47.76 Aligned_cols=57 Identities=18% Similarity=0.134 Sum_probs=35.3
Q ss_pred CCCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHH
Q 038454 127 GDKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAM 184 (359)
Q Consensus 127 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 184 (359)
......|.|.|+.|+||||+++.+.+.+ .....++......-.......+.+++++.
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l-~~~~g~~v~~~treP~~t~~g~~ir~~l~ 74 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAEYL-SEIYGVNNVVLTREPGGTLLNESVRNLLF 74 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHHHH-HHHHCGGGEEEEESSCSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHH-hhccCceeeEeeeCCCCChHHHHHHHHHh
Confidence 3345789999999999999999999884 21034444432333333334455555554
No 279
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=94.84 E-value=0.026 Score=53.40 Aligned_cols=89 Identities=16% Similarity=0.201 Sum_probs=53.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCcccccCC--CccEEEEEeCCCc-CHHHHHHHHHHHhcC-------CCCCCccHH---
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNRPQEETNE--FSDVIWVTVSQPL-DLVKLQAEIAMALKL-------SLTEDEDKV--- 197 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~--F~~~~wv~~~~~~-~~~~~~~~i~~~l~~-------~~~~~~~~~--- 197 (359)
..++|.|.+|+|||+|+.+++++ ....+. =+.++++-+++.. ...++.+++...=.. ...+.....
T Consensus 153 Qr~~Ifgg~G~GKt~Ll~~Ia~~-~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~ 231 (469)
T 2c61_A 153 QKLPIFSASGLPHNEIALQIARQ-ASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIV 231 (469)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHH-CBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH-HhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHHH
Confidence 45788899999999999999987 322111 1346677676654 456676666653111 111111111
Q ss_pred --HHHHHHHHHHh--cCCcEEEEEecC
Q 038454 198 --SRARRLLGKLK--AKKKFVLILDDI 220 (359)
Q Consensus 198 --~~~~~l~~~l~--~~k~~LlVlDdv 220 (359)
...-.+.++++ .++.+||++||+
T Consensus 232 ~~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 232 TPRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp HHHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 12233445655 259999999998
No 280
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.83 E-value=0.016 Score=50.45 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.+++|+|+.|+|||||.+.++.-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999873
No 281
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.80 E-value=0.022 Score=46.56 Aligned_cols=26 Identities=23% Similarity=0.533 Sum_probs=22.6
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 128 DKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 128 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.....|+|+|.+|+|||||...+.+.
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 34567999999999999999999876
No 282
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.80 E-value=0.014 Score=50.39 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.+++|+|+.|+|||||.+.++.-
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999875
No 283
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.79 E-value=0.014 Score=50.96 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.+++|+|+.|+|||||.+.++.-
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999765
No 284
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.79 E-value=0.015 Score=51.23 Aligned_cols=24 Identities=21% Similarity=0.434 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
-.+++|+|+.|+|||||++.+..-
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 368999999999999999999875
No 285
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.77 E-value=0.016 Score=51.82 Aligned_cols=25 Identities=24% Similarity=0.169 Sum_probs=22.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..++|.|.|+.|+||||||..++..
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHHh
Confidence 3568999999999999999999987
No 286
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.77 E-value=0.016 Score=51.13 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.++.|+|.+|+|||||+..++..
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 68999999999999999998865
No 287
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=94.77 E-value=0.12 Score=59.22 Aligned_cols=51 Identities=22% Similarity=0.247 Sum_probs=37.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHHHh
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAMAL 186 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l 186 (359)
+-|.++|++|+|||++|+.+... . ..+ ..+.++.+...+...++..+-..+
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~-~---~~~-~~~~infsa~ts~~~~~~~i~~~~ 1318 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRN-S---SLY-DVVGINFSKDTTTEHILSALHRHT 1318 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS-C---SSC-EEEEEECCTTCCHHHHHHHHHHHB
T ss_pred CeEEEECCCCCCHHHHHHHHHhc-C---CCC-ceEEEEeecCCCHHHHHHHHHHHh
Confidence 56889999999999999887766 1 122 245677777777777666665544
No 288
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.76 E-value=0.018 Score=52.97 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=22.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..+++|+|+.|+||||+++.++..
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhh
Confidence 469999999999999999999887
No 289
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.76 E-value=0.013 Score=49.69 Aligned_cols=23 Identities=26% Similarity=0.556 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.+++|+|+.|+|||||.+.++.-
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999999876
No 290
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=94.75 E-value=0.01 Score=58.51 Aligned_cols=45 Identities=18% Similarity=0.263 Sum_probs=32.5
Q ss_pred ccccccchHHHHHHHHHHhcCCCcc-----------EEEEEcCCCCcHHHHHHHHHcC
Q 038454 107 TTLVGENTKKIVKKVWEDLMGDKVT-----------KIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 107 ~~~vGr~~~~~~~~l~~~l~~~~~~-----------vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
+.++|.+. .+..+...+..+..+ -|.++|++|+|||+||+.+++.
T Consensus 295 ~~I~G~e~--vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~ 350 (595)
T 3f9v_A 295 PSIYGHWE--LKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRV 350 (595)
T ss_dssp STTSCCHH--HHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTT
T ss_pred chhcChHH--HHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHh
Confidence 56778754 555555444444211 5899999999999999999887
No 291
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.75 E-value=0.015 Score=49.82 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.+++|+|+.|+|||||.+.++.-
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999876
No 292
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.75 E-value=0.015 Score=51.01 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
-.+++|+|+.|+|||||++.++.-
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcC
Confidence 468999999999999999999875
No 293
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=94.74 E-value=0.13 Score=48.90 Aligned_cols=85 Identities=16% Similarity=0.232 Sum_probs=50.4
Q ss_pred cEEEEEcCCCCcHHHHH-HHHHcCcccccCCCc-cEEEEEeCCCc-CHHHHHHHHHHHhcC-------CCCCCccHHHH-
Q 038454 131 TKIGVWGMGGFGKTAIM-RHINNRPQEETNEFS-DVIWVTVSQPL-DLVKLQAEIAMALKL-------SLTEDEDKVSR- 199 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~~F~-~~~wv~~~~~~-~~~~~~~~i~~~l~~-------~~~~~~~~~~~- 199 (359)
..++|.|..|+|||+|| ..+.+. . +-+ .++++-+++.. ...++.+.+...=.. ...+.......
T Consensus 163 QR~~Ifg~~g~GKT~l~l~~I~n~---~--~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~~ 237 (513)
T 3oaa_A 163 QRELIIGDRQTGKTALAIDAIINQ---R--DSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYL 237 (513)
T ss_dssp CBCEEEESSSSSHHHHHHHHHHTT---S--SSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHHH
T ss_pred CEEEeecCCCCCcchHHHHHHHhh---c--cCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHHH
Confidence 56899999999999996 466665 2 233 35788888765 455666665443111 11111111111
Q ss_pred ----HHHHHHHHhc-CCcEEEEEecC
Q 038454 200 ----ARRLLGKLKA-KKKFVLILDDI 220 (359)
Q Consensus 200 ----~~~l~~~l~~-~k~~LlVlDdv 220 (359)
.-.+.+++++ ++.+||++||+
T Consensus 238 a~~~a~tiAEyfrd~G~dVLli~Dsl 263 (513)
T 3oaa_A 238 APYAGCAMGEYFRDRGEDALIIYDDL 263 (513)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEETH
T ss_pred HHHHHHHHHHHHHhcCCCEEEEecCh
Confidence 1223444443 49999999999
No 294
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=94.74 E-value=0.044 Score=47.97 Aligned_cols=37 Identities=19% Similarity=0.116 Sum_probs=29.1
Q ss_pred HHHHHHHHhcCC-C-ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 117 IVKKVWEDLMGD-K-VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 117 ~~~~l~~~l~~~-~-~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
-..-+..|+... . ...|.++|++|+|||.+|..+++.
T Consensus 89 ~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 89 AASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 344566777654 2 457999999999999999999985
No 295
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.73 E-value=0.016 Score=50.43 Aligned_cols=23 Identities=30% Similarity=0.510 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.+++|+|+.|+|||||++.++.-
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 68999999999999999999776
No 296
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.73 E-value=0.036 Score=45.31 Aligned_cols=35 Identities=23% Similarity=0.527 Sum_probs=27.0
Q ss_pred HHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 118 VKKVWEDLMGDKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 118 ~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
...+.+ +.......|+|+|.+|+|||||...+.+.
T Consensus 5 ~~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 5 FTRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp HHHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred HHHHHH-hcCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 344555 44455677999999999999999999854
No 297
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.73 E-value=0.017 Score=50.82 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
-.+++|+|+.|+|||||++.++.-
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999874
No 298
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.72 E-value=0.017 Score=45.70 Aligned_cols=22 Identities=36% Similarity=0.582 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 038454 132 KIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 132 vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.|.++|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4889999999999999999865
No 299
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.71 E-value=0.025 Score=49.50 Aligned_cols=25 Identities=28% Similarity=0.283 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.-.+++|+|+.|+|||||++.+...
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHh
Confidence 3468999999999999999998775
No 300
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.70 E-value=0.039 Score=45.28 Aligned_cols=25 Identities=20% Similarity=0.226 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
....|+|+|.+|+|||||...+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999999876
No 301
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=94.70 E-value=0.018 Score=51.54 Aligned_cols=41 Identities=17% Similarity=0.224 Sum_probs=28.8
Q ss_pred CCCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeC
Q 038454 127 GDKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVS 170 (359)
Q Consensus 127 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~ 170 (359)
....++|+|+|-||+||||+|..++..+.+ ... .++-|+..
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~La~--~G~-~VlliD~D 78 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAAFSI--LGK-RVLQIGCD 78 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHHH--TTC-CEEEEEES
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHHHHH--CCC-eEEEEeCC
Confidence 346789999999999999999999887422 222 35556554
No 302
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.70 E-value=0.021 Score=46.39 Aligned_cols=35 Identities=29% Similarity=0.545 Sum_probs=26.6
Q ss_pred HHHHHHhcC-CCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 119 KKVWEDLMG-DKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 119 ~~l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.++++.+.. .....|+|+|.+|+|||||...+...
T Consensus 6 ~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~ 41 (183)
T 1moz_A 6 SSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIG 41 (183)
T ss_dssp HHHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred HHHHHHhcCCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 344454444 55677999999999999999998754
No 303
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.69 E-value=0.016 Score=50.23 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
-.+++|+|+.|+|||||.+.++.-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999999765
No 304
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.69 E-value=0.02 Score=47.61 Aligned_cols=24 Identities=21% Similarity=0.451 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
...|+|+|.+|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 456899999999999999999876
No 305
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.68 E-value=0.02 Score=51.75 Aligned_cols=26 Identities=23% Similarity=0.355 Sum_probs=23.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcCc
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNRP 154 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 154 (359)
...+|+|+|.+|+||||++..++..+
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35799999999999999999998873
No 306
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=94.66 E-value=0.074 Score=51.20 Aligned_cols=48 Identities=17% Similarity=0.248 Sum_probs=36.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcC-HHHHHHHH
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLD-LVKLQAEI 182 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~-~~~~~~~i 182 (359)
-..++|.|..|+|||+|+.++++. .+-+.++++-+++... ..++.+++
T Consensus 227 Gqr~~I~g~~g~GKT~L~~~ia~~-----~~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 227 GGTAAIPGPAGSGKTVTQHQLAKW-----SDAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp TCEEEECSCCSHHHHHHHHHHHHH-----SSCSEEEEEECCSSSSHHHHHHHHT
T ss_pred CCeEEeecCCCCCHHHHHHHHHhc-----cCCCEEEEEEecccHHHHHHHHHHH
Confidence 357999999999999999999875 1234678888887655 45555554
No 307
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=94.64 E-value=0.039 Score=50.46 Aligned_cols=30 Identities=30% Similarity=0.330 Sum_probs=24.9
Q ss_pred hcCCCccEEEEEcCCCCcHHHHHHHHHcCc
Q 038454 125 LMGDKVTKIGVWGMGGFGKTAIMRHINNRP 154 (359)
Q Consensus 125 l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 154 (359)
+.+...+++.+.|-||+||||+|..++..+
T Consensus 13 l~~~~~~i~~~~gkGGvGKTt~a~~lA~~l 42 (348)
T 3io3_A 13 VQHDSLKWIFVGGKGGVGKTTTSSSVAVQL 42 (348)
T ss_dssp HTCTTCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hcCCCcEEEEEeCCCCCcHHHHHHHHHHHH
Confidence 345567899999999999999999988663
No 308
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.63 E-value=0.017 Score=50.54 Aligned_cols=24 Identities=33% Similarity=0.443 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
-.+++|+|+.|+|||||.+.++.-
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999999875
No 309
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.62 E-value=0.017 Score=50.58 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
-.+++|+|+.|+|||||++.++.-
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 368999999999999999999875
No 310
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=94.61 E-value=0.022 Score=46.50 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..|+|+|.+|+|||||...+...
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999874
No 311
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.61 E-value=0.017 Score=50.89 Aligned_cols=24 Identities=21% Similarity=0.272 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
-.+++|+|+.|+|||||++.++.-
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999999875
No 312
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.60 E-value=0.027 Score=45.46 Aligned_cols=25 Identities=20% Similarity=0.376 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
+...|+|+|.+|+|||||...+.+.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567999999999999999999875
No 313
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.60 E-value=0.019 Score=51.48 Aligned_cols=25 Identities=16% Similarity=0.165 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.-.+++|+|+.|+|||||++.+..-
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhh
Confidence 4478999999999999999998865
No 314
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.58 E-value=0.02 Score=45.65 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.--|.|+|.+|+|||||+..+.+.
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 346899999999999999999875
No 315
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.56 E-value=0.022 Score=48.88 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
...+|+|.|+.|+||||+++.+...
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999876
No 316
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.55 E-value=0.018 Score=50.07 Aligned_cols=23 Identities=17% Similarity=0.374 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.+++|+|+.|+|||||.+.++.-
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 58999999999999999998875
No 317
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.52 E-value=0.025 Score=48.19 Aligned_cols=38 Identities=21% Similarity=0.123 Sum_probs=26.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQ 171 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~ 171 (359)
-.|.+.|.||+||||+|..++..+ ....++ +.++.+..
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l--~~~G~~-V~v~d~D~ 44 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQ--LRQGVR-VMAGVVET 44 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHH--HHTTCC-EEEEECCC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHH--HHCCCC-EEEEEeCC
Confidence 348889999999999999998873 233444 44444443
No 318
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.52 E-value=0.026 Score=46.42 Aligned_cols=25 Identities=24% Similarity=0.468 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
+...|+|+|.+|+|||||...+.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4577999999999999999999876
No 319
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.52 E-value=0.019 Score=50.54 Aligned_cols=24 Identities=21% Similarity=0.237 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
-.+++|+|+.|+|||||.+.++.-
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 368999999999999999998765
No 320
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=94.52 E-value=0.045 Score=49.75 Aligned_cols=30 Identities=30% Similarity=0.246 Sum_probs=24.7
Q ss_pred hcCCCccEEEEEcCCCCcHHHHHHHHHcCc
Q 038454 125 LMGDKVTKIGVWGMGGFGKTAIMRHINNRP 154 (359)
Q Consensus 125 l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 154 (359)
+.+...+++.+.|-||+||||+|..++..+
T Consensus 11 l~~~~~~i~~~sgkGGvGKTt~a~~lA~~l 40 (334)
T 3iqw_A 11 LDQRSLRWIFVGGKGGVGKTTTSCSLAIQL 40 (334)
T ss_dssp HHCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hcCCCeEEEEEeCCCCccHHHHHHHHHHHH
Confidence 344556888999999999999999988763
No 321
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.48 E-value=0.057 Score=45.68 Aligned_cols=24 Identities=21% Similarity=0.187 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCc
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNRP 154 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~~ 154 (359)
..|.|.|+.|+||||+++.+.+.+
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999884
No 322
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.46 E-value=0.019 Score=50.10 Aligned_cols=23 Identities=22% Similarity=0.419 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.+++|+|+.|+|||||.+.++.-
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999876
No 323
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.46 E-value=0.019 Score=50.85 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
-.+++|+|+.|+|||||.+.++.-
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 368999999999999999999875
No 324
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.42 E-value=0.027 Score=47.38 Aligned_cols=26 Identities=19% Similarity=0.224 Sum_probs=22.9
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 128 DKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 128 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
+....|.|+|.+|+|||||+..+.+.
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34567999999999999999999876
No 325
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.41 E-value=0.022 Score=46.63 Aligned_cols=23 Identities=35% Similarity=0.530 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
-.|+|+|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46889999999999999999876
No 326
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=94.40 E-value=0.044 Score=50.13 Aligned_cols=25 Identities=20% Similarity=0.370 Sum_probs=22.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
+..+|+|+|.+|+|||||...+...
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 4689999999999999999999864
No 327
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.40 E-value=0.023 Score=45.12 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.-|+|+|.+|+|||||...+.+.
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999999865
No 328
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=94.38 E-value=0.13 Score=48.82 Aligned_cols=22 Identities=18% Similarity=0.428 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 038454 132 KIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 132 vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.|+|+|.+|+|||||...+...
T Consensus 226 kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 226 KVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 4899999999999999998765
No 329
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.37 E-value=0.029 Score=45.04 Aligned_cols=24 Identities=21% Similarity=0.410 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..-|+|+|.+|+|||||...+...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 346899999999999999999876
No 330
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=94.37 E-value=0.022 Score=50.17 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 038454 132 KIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 132 vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.++|+|+.|+|||||.+.++..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999865
No 331
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.37 E-value=0.024 Score=54.08 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=22.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
...+++|+|..|+|||||++.++..
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgl 316 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQ 316 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHH
Confidence 3569999999999999999999877
No 332
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=94.37 E-value=0.031 Score=46.40 Aligned_cols=25 Identities=24% Similarity=0.469 Sum_probs=21.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
+...|+|+|.+|+|||||...+.+.
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3456899999999999999998764
No 333
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.36 E-value=0.024 Score=48.79 Aligned_cols=25 Identities=12% Similarity=0.259 Sum_probs=22.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCc
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRP 154 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~ 154 (359)
...|+|.|..|+||||+++.+++.+
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4679999999999999999999873
No 334
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=94.34 E-value=0.072 Score=44.41 Aligned_cols=50 Identities=16% Similarity=0.126 Sum_probs=32.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHHH
Q 038454 132 KIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIAM 184 (359)
Q Consensus 132 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 184 (359)
.|+|-|.-|+||||.++.+++.+. ....+ +.+..-.......+..+.++.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~--~~g~~-v~~treP~~t~~~~~ir~~l~ 51 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLE--KRGKK-VILKREPGGTETGEKIRKILL 51 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH--HTTCC-EEEEESSCSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH--HCCCc-EEEEECCCCCcHHHHHHHHhh
Confidence 478889999999999999998842 22233 444443334445555555553
No 335
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=94.33 E-value=0.025 Score=45.83 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..|+|+|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999875
No 336
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=94.33 E-value=0.025 Score=52.29 Aligned_cols=26 Identities=19% Similarity=-0.023 Sum_probs=23.0
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 128 DKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 128 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
....+++|+|++|+|||||++.++..
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34579999999999999999999875
No 337
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.26 E-value=0.026 Score=45.04 Aligned_cols=23 Identities=26% Similarity=0.644 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
--|+|+|.+|+|||||...+.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35889999999999999999875
No 338
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=94.26 E-value=0.093 Score=50.72 Aligned_cols=85 Identities=13% Similarity=0.141 Sum_probs=52.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCc-CHHHHHHHHHH----HhcC----------CCCCCc
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPL-DLVKLQAEIAM----ALKL----------SLTEDE 194 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~----~l~~----------~~~~~~ 194 (359)
-..++|.|..|+|||+|+.++++. . +-+.++++-+++.. ...++++++-+ .++. ... +.
T Consensus 232 Gqr~~Ifgg~g~GKT~L~~~ia~~-~----~~~v~V~~~iGER~~Ev~e~~~~~~el~d~~~G~~~m~rtvvV~~ts-d~ 305 (600)
T 3vr4_A 232 GGAAAVPGPFGAGKTVVQHQIAKW-S----DVDLVVYVGCGERGNEMTDVVNEFPELIDPNTGESLMERTVLIANTS-NM 305 (600)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHH-S----SCSEEEEEEEEECHHHHHHHHHHTTTCBCTTTCSBGGGGEEEEEEET-TS
T ss_pred CCEEeeecCCCccHHHHHHHHHhc-c----CCCEEEEEEecccHHHHHHHHHHHHhhcccccccccccceEEEEECC-CC
Confidence 357999999999999999999886 2 23567788777663 44555544322 1111 001 11
Q ss_pred cHHH------HHHHHHHHHhc-CCcEEEEEecC
Q 038454 195 DKVS------RARRLLGKLKA-KKKFVLILDDI 220 (359)
Q Consensus 195 ~~~~------~~~~l~~~l~~-~k~~LlVlDdv 220 (359)
.... ..-.+.+++++ ++.+||++|++
T Consensus 306 p~~~R~~~~~~altiAEyfrd~G~dVLl~~Ds~ 338 (600)
T 3vr4_A 306 PVAAREASIYTGITIAEYFRDMGYDVAIMADST 338 (600)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECH
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEecch
Confidence 1111 12233455544 58999999999
No 339
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.25 E-value=0.025 Score=45.14 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.-.|+|+|.+|+|||||...+.+.
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 346899999999999999999865
No 340
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.25 E-value=0.026 Score=44.78 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
--|+|+|.+|+|||||...+.+.
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999998765
No 341
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=94.25 E-value=0.022 Score=45.41 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 038454 132 KIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 132 vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
-|+|+|.+|+|||||...+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 5899999999999999998765
No 342
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.24 E-value=0.026 Score=44.88 Aligned_cols=22 Identities=36% Similarity=0.569 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 038454 132 KIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 132 vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
-|+|+|.+|+|||||...+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999865
No 343
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.24 E-value=0.026 Score=44.96 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 038454 132 KIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 132 vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
-|+|+|.+|+|||||...+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999999866
No 344
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.21 E-value=0.026 Score=44.99 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
--|+|+|.+|+|||||...+.+.
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45899999999999999999876
No 345
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=94.21 E-value=0.026 Score=46.09 Aligned_cols=24 Identities=33% Similarity=0.346 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.--|+|+|.+|+|||||+..+.+.
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 346889999999999999999876
No 346
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=94.17 E-value=0.021 Score=48.84 Aligned_cols=24 Identities=25% Similarity=0.273 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..+|+|.|+.|+|||||++.+...
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999988764
No 347
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.16 E-value=0.035 Score=45.40 Aligned_cols=24 Identities=21% Similarity=0.432 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
...|+|+|.+|+|||||...+.+.
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHcC
Confidence 457999999999999999999876
No 348
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.15 E-value=0.027 Score=45.47 Aligned_cols=25 Identities=32% Similarity=0.531 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
....|+|+|.+|+|||||...+.+.
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3457899999999999999998775
No 349
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=94.13 E-value=0.024 Score=51.17 Aligned_cols=25 Identities=36% Similarity=0.497 Sum_probs=22.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..++++|+|+.|+|||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4689999999999999999999865
No 350
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.13 E-value=0.033 Score=44.42 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
--|+|+|.+|+|||||+..+...
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCCCHHHHHHHHHhc
Confidence 35899999999999999998653
No 351
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.12 E-value=0.025 Score=49.61 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.+++|+|+.|+|||||.+.++.-
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999875
No 352
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.12 E-value=0.02 Score=53.98 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=22.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
+.+|.|+|.+|+||||++..++..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999886
No 353
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=94.11 E-value=0.028 Score=46.08 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
--|+|+|.+|+|||||+..+.+.
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999888765
No 354
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.09 E-value=0.028 Score=45.33 Aligned_cols=24 Identities=33% Similarity=0.459 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
...|+|+|.+|+|||||...+.+.
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457999999999999999999876
No 355
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.08 E-value=0.029 Score=45.20 Aligned_cols=24 Identities=29% Similarity=0.524 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..-|+|+|.+|+|||||...+.+.
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 346899999999999999999865
No 356
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.07 E-value=0.028 Score=51.54 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
-.+++|+|+.|+|||||.+.++.-
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCchHHHHHHHHhcC
Confidence 368999999999999999999875
No 357
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.06 E-value=0.029 Score=44.71 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
--|+|+|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 45899999999999999999865
No 358
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=94.05 E-value=0.029 Score=45.81 Aligned_cols=22 Identities=18% Similarity=0.369 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 038454 132 KIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 132 vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
-|+|+|.+|+|||||...+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5889999999999999999876
No 359
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=94.03 E-value=0.026 Score=46.65 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=22.0
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 128 DKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 128 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
....-|+|+|.+|+|||||+..+...
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhC
Confidence 34467999999999999999999754
No 360
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.01 E-value=0.031 Score=45.05 Aligned_cols=24 Identities=33% Similarity=0.385 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.--|+|+|.+|+|||||...+.+.
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 346899999999999999998865
No 361
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.00 E-value=0.028 Score=46.38 Aligned_cols=23 Identities=17% Similarity=-0.062 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.++.++|+.|+||||++..++++
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~ 26 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEI 26 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999877766
No 362
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=94.00 E-value=0.03 Score=45.93 Aligned_cols=24 Identities=21% Similarity=0.397 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.--|+|+|.+|+|||||+..+.+.
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhC
Confidence 346899999999999999998865
No 363
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=93.99 E-value=0.035 Score=45.34 Aligned_cols=23 Identities=26% Similarity=0.182 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.+.+|+|..|+|||||+.+++--
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999998764
No 364
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=93.99 E-value=0.034 Score=46.41 Aligned_cols=27 Identities=26% Similarity=0.334 Sum_probs=21.3
Q ss_pred CCCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 127 GDKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 127 ~~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
....-.|+|+|.+|+|||||...+.+.
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhC
Confidence 344567899999999999999998865
No 365
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=93.98 E-value=0.032 Score=44.46 Aligned_cols=23 Identities=17% Similarity=0.306 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
--|+|+|.+|+|||||...+.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45899999999999999999864
No 366
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=93.98 E-value=0.028 Score=52.17 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
++|+|.|+.|+||||||..++..
T Consensus 3 ~~i~i~GptgsGKttla~~La~~ 25 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQK 25 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHH
Confidence 58999999999999999999877
No 367
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=93.96 E-value=0.031 Score=44.39 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 038454 132 KIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 132 vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
-|+|+|.+|+|||||...+.+.
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999754
No 368
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.93 E-value=0.02 Score=50.14 Aligned_cols=25 Identities=20% Similarity=0.336 Sum_probs=22.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
+...|+|.|..|+||||+|+.+.+.
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 3578999999999999999998887
No 369
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=93.93 E-value=0.028 Score=47.41 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.+|+|.|+.|+||||+++.+...
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~ 26 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASE 26 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999876
No 370
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=93.92 E-value=0.032 Score=45.97 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
...|+|+|.+|+|||||...+.+.
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 457899999999999999999875
No 371
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=93.91 E-value=0.033 Score=44.83 Aligned_cols=24 Identities=21% Similarity=0.436 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
...|.|+|.+|+|||||...+.+.
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 457999999999999999999876
No 372
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=93.89 E-value=0.03 Score=49.90 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
-.+++|+|+.|+|||||.+.++.-
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 368999999999999999999876
No 373
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.89 E-value=0.021 Score=51.19 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
-.+++|+|+.|+|||||++.+..-
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTTS
T ss_pred CCEEEEECCCCchHHHHHHHHHcC
Confidence 468999999999999999998765
No 374
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=93.89 E-value=0.034 Score=44.45 Aligned_cols=24 Identities=29% Similarity=0.484 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
...|+|+|.+|+|||||...+...
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 356899999999999999999765
No 375
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=93.88 E-value=0.028 Score=45.37 Aligned_cols=25 Identities=20% Similarity=0.446 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
...-|+|+|.+|+|||||+..+...
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC
Confidence 3456899999999999999999765
No 376
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=93.88 E-value=0.033 Score=53.89 Aligned_cols=25 Identities=28% Similarity=0.291 Sum_probs=22.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
...+|.++|++|+||||+|+.++..
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~ 58 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRY 58 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999876
No 377
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=93.87 E-value=0.033 Score=45.33 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
--|+|+|.+|+|||||...+.+.
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999876
No 378
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=93.86 E-value=0.036 Score=45.16 Aligned_cols=26 Identities=23% Similarity=0.519 Sum_probs=22.3
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 128 DKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 128 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.....|+|+|.+|+|||||...+.+.
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 44567999999999999999999876
No 379
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=93.85 E-value=0.034 Score=45.13 Aligned_cols=24 Identities=33% Similarity=0.480 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.-.|+|+|.+|+|||||...+.+.
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 356899999999999999999866
No 380
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=93.84 E-value=0.034 Score=45.24 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..-|.|+|.+|+|||||+..+.+.
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 456899999999999999999865
No 381
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=93.82 E-value=0.033 Score=51.14 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
-.+++|+|+.|+|||||.+.+..-
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEEcCCCchHHHHHHHHhcC
Confidence 368999999999999999998875
No 382
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.82 E-value=0.034 Score=50.98 Aligned_cols=23 Identities=39% Similarity=0.611 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.+++|+|+.|+|||||.+.++.-
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 68999999999999999999865
No 383
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=93.82 E-value=0.035 Score=44.70 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
--|+|+|.+|+|||||...+...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45899999999999999999864
No 384
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.81 E-value=0.039 Score=50.62 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.+++|+|+.|+|||||.+.+...
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 59999999999999999998776
No 385
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=93.79 E-value=0.035 Score=48.51 Aligned_cols=37 Identities=16% Similarity=0.425 Sum_probs=26.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVS 170 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~ 170 (359)
++|+|.|-||+||||+|..++..+. .... .++-|+..
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la--~~G~-~VlliD~D 38 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLH--AMGK-TIMVVGCD 38 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHH--TTTC-CEEEEEEC
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHH--HCCC-cEEEEcCC
Confidence 5788889999999999999988742 1222 35566554
No 386
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=93.76 E-value=0.036 Score=44.96 Aligned_cols=23 Identities=30% Similarity=0.381 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
--|+|+|.+|+|||||...+.+.
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999998865
No 387
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=93.76 E-value=0.036 Score=45.26 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..-|+|+|.+|+|||||+..+.+.
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999999865
No 388
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=93.74 E-value=0.026 Score=45.64 Aligned_cols=23 Identities=22% Similarity=0.439 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
--|+|+|.+|+|||||+..+.+.
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999999865
No 389
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.74 E-value=0.046 Score=52.59 Aligned_cols=26 Identities=4% Similarity=-0.178 Sum_probs=23.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcCc
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNRP 154 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 154 (359)
...+|.+.|++|+||||+|+.++..+
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L 419 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTF 419 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred cceEEEecccCCCCHHHHHHHHHHHH
Confidence 44689999999999999999999984
No 390
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=93.73 E-value=0.037 Score=44.90 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..-|+|+|.+|+|||||+..+.+.
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 356899999999999999999865
No 391
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=93.73 E-value=0.069 Score=50.08 Aligned_cols=27 Identities=22% Similarity=0.055 Sum_probs=23.3
Q ss_pred CCCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 127 GDKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 127 ~~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
...-.+++|+|+.|+|||||.+.+...
T Consensus 164 ~~~ggii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 164 KRPHGIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp TSSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred HhcCCeEEEECCCCCCHHHHHHHHHhh
Confidence 344578999999999999999998876
No 392
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=93.72 E-value=0.063 Score=48.05 Aligned_cols=32 Identities=22% Similarity=0.356 Sum_probs=25.8
Q ss_pred HHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 118 VKKVWEDLMGDKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 118 ~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
+++|...+.. .+++++|++|+|||||.+.+. .
T Consensus 156 i~~L~~~l~G---~i~~l~G~sG~GKSTLln~l~-~ 187 (302)
T 2yv5_A 156 IDELVDYLEG---FICILAGPSGVGKSSILSRLT-G 187 (302)
T ss_dssp HHHHHHHTTT---CEEEEECSTTSSHHHHHHHHH-S
T ss_pred HHHHHhhccC---cEEEEECCCCCCHHHHHHHHH-H
Confidence 4455555542 589999999999999999999 6
No 393
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=93.70 E-value=0.037 Score=45.44 Aligned_cols=24 Identities=29% Similarity=0.501 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..-|+|+|.+|+|||||...+...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 456999999999999999998875
No 394
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=93.70 E-value=0.038 Score=44.72 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.--|+|+|.+|+|||||...+...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 356899999999999999998876
No 395
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=93.70 E-value=0.036 Score=50.84 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
-.+++|+|+.|+|||||.+.++.-
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEEcCCCchHHHHHHHHHCC
Confidence 368999999999999999999875
No 396
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=93.69 E-value=0.036 Score=51.22 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
-.+++|+|+.|+|||||.+.++.-
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEEcCCCchHHHHHHHHHcC
Confidence 368999999999999999999875
No 397
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=93.67 E-value=0.037 Score=45.33 Aligned_cols=24 Identities=33% Similarity=0.378 Sum_probs=20.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.--|+|+|.+|+|||||++.+.+.
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~ 37 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSK 37 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHHhh
Confidence 346899999999999999877765
No 398
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=93.67 E-value=0.036 Score=44.91 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
...|+|+|.+|+|||||+..+.+.
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 457999999999999999999854
No 399
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=93.66 E-value=0.038 Score=44.66 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.-|.|+|.+|+|||||...+...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999998865
No 400
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.65 E-value=0.044 Score=45.18 Aligned_cols=25 Identities=24% Similarity=0.546 Sum_probs=21.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
...-|+|+|.+|+|||||+..+.+.
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456999999999999999999865
No 401
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=93.65 E-value=0.14 Score=50.82 Aligned_cols=63 Identities=16% Similarity=0.090 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHH
Q 038454 115 KKIVKKVWEDLMGDKVTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIA 183 (359)
Q Consensus 115 ~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 183 (359)
....+.+...|... .+..|+|++|.|||+.+.++...+ .... ..+.|+...+..+..++..+.
T Consensus 192 ~~Q~~AV~~al~~~--~~~lI~GPPGTGKT~ti~~~I~~l--~~~~--~~ILv~a~TN~AvD~i~erL~ 254 (646)
T 4b3f_X 192 TSQKEAVLFALSQK--ELAIIHGPPGTGKTTTVVEIILQA--VKQG--LKVLCCAPSNIAVDNLVERLA 254 (646)
T ss_dssp HHHHHHHHHHHHCS--SEEEEECCTTSCHHHHHHHHHHHH--HHTT--CCEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC--CceEEECCCCCCHHHHHHHHHHHH--HhCC--CeEEEEcCchHHHHHHHHHHH
Confidence 33455666666544 467899999999997666655542 2222 356677666655666666554
No 402
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=93.65 E-value=0.038 Score=50.80 Aligned_cols=24 Identities=21% Similarity=0.319 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
-.+++|+|+.|+|||||.+.++.-
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCchHHHHHHHHhcC
Confidence 368999999999999999999875
No 403
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=93.64 E-value=0.038 Score=45.74 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
...|+|+|.+|+|||||...+...
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 456999999999999999999765
No 404
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.60 E-value=0.04 Score=44.45 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.--|+|+|.+|+|||||...+.+.
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 346899999999999999998865
No 405
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=93.60 E-value=0.039 Score=50.97 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.+++|+|+.|+|||||.+.++.-
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCcHHHHHHHHHHcC
Confidence 68999999999999999999865
No 406
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=93.60 E-value=0.041 Score=48.70 Aligned_cols=37 Identities=22% Similarity=0.385 Sum_probs=26.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVS 170 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~ 170 (359)
++|+|.|-||+||||+|..++..+.+ ... .++-|+..
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~La~--~G~-rVlliD~D 39 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALAE--MGK-KVMIVGCD 39 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHH--TTC-CEEEEEEC
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHHH--CCC-eEEEEecC
Confidence 67888999999999999999887422 222 25555554
No 407
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=93.58 E-value=0.039 Score=45.76 Aligned_cols=25 Identities=32% Similarity=0.525 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
....|+|+|.+|+|||||...+.+.
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3457999999999999999999876
No 408
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=93.57 E-value=0.036 Score=51.04 Aligned_cols=24 Identities=13% Similarity=0.322 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
...++|+|..|+|||||++.+...
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999998876
No 409
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=93.56 E-value=0.04 Score=45.53 Aligned_cols=22 Identities=18% Similarity=0.367 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHc
Q 038454 131 TKIGVWGMGGFGKTAIMRHINN 152 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~ 152 (359)
.-|+|+|.+|+|||||...+..
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999999874
No 410
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=93.55 E-value=0.039 Score=50.88 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
-.+++|+|+.|+|||||.+.++.-
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCChHHHHHHHHHcC
Confidence 368999999999999999999865
No 411
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=93.54 E-value=0.042 Score=45.43 Aligned_cols=24 Identities=21% Similarity=0.364 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..-|.|+|.+|+|||||+..+.+.
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 356999999999999999988775
No 412
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=93.54 E-value=0.021 Score=47.71 Aligned_cols=25 Identities=16% Similarity=0.320 Sum_probs=21.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
....|+|+|.+|+|||||.+.+...
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3467999999999999999988765
No 413
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=93.52 E-value=0.043 Score=45.47 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..-|+|+|.+|+|||||+..+.+.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999876
No 414
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=93.51 E-value=0.041 Score=46.03 Aligned_cols=24 Identities=33% Similarity=0.346 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..-|+|+|.+|+|||||+..+...
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999999876
No 415
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.50 E-value=0.056 Score=49.94 Aligned_cols=26 Identities=27% Similarity=0.268 Sum_probs=22.6
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 128 DKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 128 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..-.+++|+|+.|+|||||++.+...
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34468999999999999999998875
No 416
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=93.50 E-value=0.03 Score=45.91 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..|+|+|.+|+|||||...+...
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCG
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 56899999999999999999876
No 417
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=93.49 E-value=0.042 Score=46.02 Aligned_cols=24 Identities=17% Similarity=0.171 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
...|+|+|.+|+|||||...+.+.
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 467999999999999999999865
No 418
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=93.49 E-value=0.032 Score=46.22 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=20.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHc
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINN 152 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~ 152 (359)
....|+|+|.+|+|||||...+..
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCC
T ss_pred cEEEEEEECCCCCCHHHHHHHHHh
Confidence 345799999999999999999853
No 419
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=93.48 E-value=0.042 Score=45.22 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.--|+|+|.+|+|||||...+.+.
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 356999999999999999999876
No 420
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=93.48 E-value=0.053 Score=49.37 Aligned_cols=26 Identities=19% Similarity=0.542 Sum_probs=22.9
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 128 DKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 128 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
....+++|+|.+|+|||||.+.+...
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~ 78 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSL 78 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 45679999999999999999999854
No 421
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=93.47 E-value=0.049 Score=46.27 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
....|+|+|.+|+|||||+..+...
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467999999999999999999876
No 422
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.46 E-value=0.042 Score=45.80 Aligned_cols=24 Identities=33% Similarity=0.540 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..-|+|+|.+|+|||||+..+.+.
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 457899999999999999998765
No 423
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=93.46 E-value=0.055 Score=44.43 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.--|+|+|.+|+|||||...+...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456899999999999999999876
No 424
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=93.45 E-value=0.043 Score=45.52 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..-|+|+|.+|+|||||+..+.+.
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEEECCCCcCHHHHHHHHHhC
Confidence 457999999999999999999876
No 425
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=93.43 E-value=0.044 Score=44.88 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.-|+|+|.+|+|||||...+.+.
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 56899999999999999999865
No 426
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=93.42 E-value=0.044 Score=44.83 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..-|+|+|.+|+|||||...+...
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 356999999999999999999876
No 427
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=93.40 E-value=0.13 Score=43.10 Aligned_cols=49 Identities=20% Similarity=0.251 Sum_probs=31.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHHHHHHHHH
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLVKLQAEIA 183 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 183 (359)
..|+|-|.-|+||||+++.+++.+ ...++ +++..-.......+.++.++
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L---~~~~~-v~~~~eP~~t~~g~~ir~~l 51 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRL---VKDYD-VIMTREPGGVPTGEEIRKIV 51 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH---TTTSC-EEEEESSTTCHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHHH---HCCCC-EEEeeCCCCChHHHHHHHHH
Confidence 468899999999999999999884 23444 33333322333444445444
No 428
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=93.40 E-value=0.045 Score=45.02 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.--|+|+|.+|+|||||...+.+.
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHhcC
Confidence 356899999999999999999876
No 429
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=93.37 E-value=0.046 Score=44.86 Aligned_cols=24 Identities=21% Similarity=0.422 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..-|+|+|.+|+|||||...+.+.
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 456999999999999999999876
No 430
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=93.36 E-value=0.046 Score=44.87 Aligned_cols=23 Identities=22% Similarity=0.423 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
--|.|+|.+|+|||||...+.+.
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999999865
No 431
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=93.35 E-value=0.046 Score=46.37 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 038454 132 KIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 132 vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
-|.|+|.+|+|||+|+.++.+.
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 4889999999999999998765
No 432
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=93.34 E-value=0.033 Score=50.90 Aligned_cols=23 Identities=26% Similarity=0.286 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.+++|+|+.|+|||||.+.++.-
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTS
T ss_pred CEEEEECCCCccHHHHHHHHHcC
Confidence 68999999999999999999875
No 433
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.34 E-value=0.058 Score=46.11 Aligned_cols=25 Identities=28% Similarity=0.318 Sum_probs=19.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCc
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRP 154 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~ 154 (359)
...|.|.|+.|+||||+++.+++.+
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999999884
No 434
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=93.33 E-value=0.078 Score=45.43 Aligned_cols=41 Identities=22% Similarity=0.208 Sum_probs=28.4
Q ss_pred EEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHH
Q 038454 133 IGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLV 176 (359)
Q Consensus 133 i~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~ 176 (359)
|+|.|-||+||||+|..++..+.+ .. ..++-|+.....++.
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~--~g-~~VlliD~D~~~~l~ 43 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMAS--DY-DKIYAVDGDPDSCLG 43 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTT--TC-SCEEEEEECTTSCHH
T ss_pred EEEecCCCCCHHHHHHHHHHHHHH--CC-CeEEEEeCCCCcChH
Confidence 667999999999999999887422 22 336666665444433
No 435
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=93.33 E-value=0.044 Score=46.91 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..++|.|++|+||||+|+.+.+.
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~ 31 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEK 31 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999887
No 436
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=93.33 E-value=0.046 Score=45.20 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..-|+|+|.+|+|||||...+.+.
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 356899999999999999999865
No 437
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.31 E-value=0.048 Score=44.36 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.-|.|.|.+|+||||||..+..+
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 56899999999999999998875
No 438
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=93.31 E-value=0.043 Score=45.98 Aligned_cols=23 Identities=13% Similarity=0.150 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.+|.|.|+.|+||||+++.++..
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~ 29 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEH 29 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHH
Confidence 58999999999999999999987
No 439
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=93.29 E-value=0.046 Score=45.35 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=21.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
...-|+|+|.+|+|||||...+.+.
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC-
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3456899999999999999998765
No 440
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=93.26 E-value=0.048 Score=44.61 Aligned_cols=24 Identities=29% Similarity=0.299 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
...|+|+|.+|+|||||...+...
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 457999999999999999999765
No 441
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=93.26 E-value=0.047 Score=44.88 Aligned_cols=24 Identities=21% Similarity=0.408 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
...|+|+|.+|+|||||...+.+.
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 467999999999999999999876
No 442
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=93.25 E-value=0.048 Score=45.12 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=21.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
...-|+|+|.+|+|||||+..+...
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 3467999999999999999999865
No 443
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=93.24 E-value=0.041 Score=50.63 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.+++|+|+.|+|||||++.+...
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 58999999999999999999887
No 444
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=93.24 E-value=0.056 Score=46.35 Aligned_cols=25 Identities=32% Similarity=0.323 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
....|+|+|.+|+|||||...+...
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHcCC
Confidence 4567999999999999999999876
No 445
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=93.23 E-value=0.049 Score=44.56 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..|+|+|.+|+|||||...+.+.
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999876
No 446
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.23 E-value=0.047 Score=44.83 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.--|+|+|.+|+|||||...+.+.
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eeEEEEECCCCcCHHHHHHHHhcC
Confidence 346999999999999999998865
No 447
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=93.19 E-value=0.094 Score=48.30 Aligned_cols=46 Identities=24% Similarity=0.353 Sum_probs=30.6
Q ss_pred ccccccch-HHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 107 TTLVGENT-KKIVKKVWEDLMGDKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 107 ~~~vGr~~-~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..++|... .......+..+.... ..|.|+|.+|+||+++|+.+.+.
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~~~-~~vli~GesGtGKe~lAr~ih~~ 175 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAKSK-APVLITGESGTGKEIVARLIHRY 175 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTSC-SCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccccccchHHHHHHhhhhhhhccc-hhheEEeCCCchHHHHHHHHHHh
Confidence 45788766 222333333344443 34679999999999999998765
No 448
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.19 E-value=0.05 Score=44.76 Aligned_cols=24 Identities=25% Similarity=0.524 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..-|+|+|.+|+|||||...+...
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCcHHHHHHHHHcC
Confidence 356899999999999999999865
No 449
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=93.17 E-value=0.05 Score=45.23 Aligned_cols=24 Identities=21% Similarity=0.450 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..-|+|+|.+|+|||||...+.+.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999999865
No 450
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=93.17 E-value=0.049 Score=50.58 Aligned_cols=24 Identities=21% Similarity=0.423 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
-.+++|+|+.|+|||||.+.++.-
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCChHHHHHHHHhCC
Confidence 368999999999999999999864
No 451
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=93.16 E-value=0.049 Score=51.97 Aligned_cols=25 Identities=28% Similarity=0.247 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
...+|.++|++|+||||+++.++..
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999876
No 452
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=93.16 E-value=0.046 Score=44.45 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..|+|+|.+|+|||||...+.+.
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 56899999999999999999865
No 453
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=93.15 E-value=0.041 Score=49.26 Aligned_cols=21 Identities=24% Similarity=0.442 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 038454 132 KIGVWGMGGFGKTAIMRHINN 152 (359)
Q Consensus 132 vi~I~G~gGiGKTtLa~~v~~ 152 (359)
-|+|+|.+|+|||||.+.++.
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 469999999999999999775
No 454
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=93.13 E-value=0.061 Score=50.30 Aligned_cols=24 Identities=25% Similarity=0.428 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..+++|+|..|+|||||.+.+...
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTC
T ss_pred CeEEEEECCCCCcHHHHHHHHhCC
Confidence 458999999999999999999883
No 455
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=93.13 E-value=0.062 Score=48.94 Aligned_cols=27 Identities=22% Similarity=0.379 Sum_probs=23.3
Q ss_pred CCCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 127 GDKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 127 ~~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..+..+|+|+|.+|+|||||+..+...
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 355689999999999999999998754
No 456
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=93.11 E-value=0.051 Score=45.86 Aligned_cols=23 Identities=17% Similarity=0.335 Sum_probs=20.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHc
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINN 152 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~ 152 (359)
..-|+|+|.+|+|||||...+..
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 35699999999999999999874
No 457
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=93.11 E-value=0.052 Score=44.59 Aligned_cols=22 Identities=23% Similarity=0.084 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 038454 132 KIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 132 vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
++.|+|.+|+||||+|.+++..
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS
T ss_pred CEEEECCCCCcHHHHHHHHHhc
Confidence 3789999999999999998854
No 458
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=93.10 E-value=0.055 Score=48.40 Aligned_cols=25 Identities=16% Similarity=0.300 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
....|+|+|.+|+|||||...+...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3468999999999999999999876
No 459
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=93.09 E-value=0.051 Score=45.67 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=20.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.--|+|+|.+|+|||||...+.+.
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC-
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 356899999999999999999865
No 460
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=93.04 E-value=0.031 Score=51.19 Aligned_cols=24 Identities=38% Similarity=0.567 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
-.+++|+|+.|+|||||.+.++.-
T Consensus 31 Ge~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 31 GERFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 368999999999999999999865
No 461
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=93.02 E-value=0.045 Score=45.05 Aligned_cols=23 Identities=26% Similarity=0.521 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.-|+|+|.+|+|||||...+.+.
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC-
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 45899999999999999999765
No 462
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=93.01 E-value=0.089 Score=47.01 Aligned_cols=33 Identities=27% Similarity=0.474 Sum_probs=26.3
Q ss_pred HHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 118 VKKVWEDLMGDKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 118 ~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
++++..++.. .+++|+|++|+|||||.+.+...
T Consensus 160 v~~lf~~l~g---eiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 160 IEELKEYLKG---KISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp HHHHHHHHSS---SEEEEECSTTSSHHHHHHHHSTT
T ss_pred HHHHHHHhcC---CeEEEECCCCCcHHHHHHHhccc
Confidence 4455555543 58999999999999999999876
No 463
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.00 E-value=0.055 Score=44.42 Aligned_cols=23 Identities=35% Similarity=0.408 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.-|+|+|.+|+|||||+..+.+.
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999866
No 464
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.00 E-value=0.054 Score=45.14 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.-|+|+|.+|+|||||...+...
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHhcC
Confidence 56999999999999999999875
No 465
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=92.98 E-value=0.061 Score=47.15 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
...|+++|.+|+|||||...+...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999999876
No 466
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=92.97 E-value=0.53 Score=47.14 Aligned_cols=24 Identities=21% Similarity=0.235 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
...|+|+|.+|+|||||...+...
T Consensus 69 ~~~V~VvG~~naGKSSLlNaLlg~ 92 (695)
T 2j69_A 69 VFRLLVLGDMKRGKSTFLNALIGE 92 (695)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 356999999999999999999876
No 467
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=92.94 E-value=0.056 Score=45.11 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.--|+|+|.+|+|||||+..+.+.
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999865
No 468
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=92.91 E-value=0.057 Score=44.83 Aligned_cols=25 Identities=20% Similarity=0.317 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
...-|+|+|.+|+|||||+..+.+.
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhhC
Confidence 3457999999999999999999765
No 469
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=92.89 E-value=0.056 Score=49.42 Aligned_cols=25 Identities=28% Similarity=0.519 Sum_probs=22.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.-.+++|+|..|+|||||.+.+.+.
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999999987
No 470
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=92.89 E-value=0.087 Score=50.66 Aligned_cols=48 Identities=15% Similarity=0.176 Sum_probs=34.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCc-CHHHHHHHH
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPL-DLVKLQAEI 182 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i 182 (359)
-..++|.|..|+|||+|+.++++. . +-+.++++-+++.. ...++.+++
T Consensus 221 Gqr~~Ifg~~g~GKT~l~~~ia~~-~----~~~v~V~~~iGER~~Ev~e~~~~~ 269 (578)
T 3gqb_A 221 GGTAAIPGPFGSGKSVTQQSLAKW-S----NADVVVYVGSGERGNEMTDVLVEF 269 (578)
T ss_dssp TCEEEECCCTTSCHHHHHHHHHHH-S----SCSEEEEEEEEECHHHHHHHHTTG
T ss_pred CCEEeeeCCCCccHHHHHHHHHhc-c----CCCEEEEEEecccHHHHHHHHHHH
Confidence 357999999999999999999886 2 23567787777663 344444443
No 471
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=92.88 E-value=0.04 Score=53.65 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=22.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..+|+|+|+.|+|||||++.++..
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHHh
Confidence 468999999999999999999987
No 472
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.87 E-value=0.059 Score=44.90 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..-|+|+|.+|+|||||...+...
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457899999999999999999865
No 473
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=92.85 E-value=0.06 Score=44.65 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.-|+|+|.+|+|||||...+...
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999875
No 474
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=92.82 E-value=0.045 Score=49.68 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.+++|+|..|+|||||++.+..-
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGG
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999876
No 475
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=92.76 E-value=0.036 Score=45.00 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=10.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..-|+|+|.+|+|||||+..+.+.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEECCCCC------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456999999999999999988765
No 476
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=92.76 E-value=0.062 Score=45.16 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
--|.|+|.+|+|||||...+.+.
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46889999999999999999865
No 477
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=92.73 E-value=0.15 Score=48.07 Aligned_cols=24 Identities=25% Similarity=0.472 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
...|+|+|.+|+|||||...+...
T Consensus 180 ~~kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 180 AIKVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CceEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999999876
No 478
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=92.73 E-value=0.065 Score=44.92 Aligned_cols=24 Identities=25% Similarity=0.427 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.--|+|+|.+|+|||||...+...
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 456999999999999999999875
No 479
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=92.72 E-value=0.042 Score=56.13 Aligned_cols=45 Identities=20% Similarity=0.273 Sum_probs=33.1
Q ss_pred ccccccchHHHHHHHHHHhcC-------------CCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 107 TTLVGENTKKIVKKVWEDLMG-------------DKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 107 ~~~vGr~~~~~~~~l~~~l~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
..++|.+. .++.|...+.. .....+.++|++|+|||+||+.+++.
T Consensus 477 ~di~gl~~--vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~ 534 (806)
T 1ypw_A 477 EDIGGLED--VKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp CSSSCCCC--HHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHH
T ss_pred cccccchh--hhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHH
Confidence 45677766 55556555431 13456899999999999999999987
No 480
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=92.68 E-value=0.065 Score=49.09 Aligned_cols=23 Identities=17% Similarity=0.235 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.+++|+|++|+|||||.+.+...
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCC
T ss_pred CEEEEECCCCccHHHHHHHHhcc
Confidence 58999999999999999999876
No 481
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=92.67 E-value=0.086 Score=51.58 Aligned_cols=26 Identities=27% Similarity=0.155 Sum_probs=23.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcCc
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNRP 154 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 154 (359)
...+|.|.|++|+||||+|+.+...+
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L 420 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTL 420 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999999873
No 482
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=92.65 E-value=0.086 Score=43.72 Aligned_cols=43 Identities=21% Similarity=0.326 Sum_probs=29.1
Q ss_pred cEEEEE-cCCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCHH
Q 038454 131 TKIGVW-GMGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDLV 176 (359)
Q Consensus 131 ~vi~I~-G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~ 176 (359)
++|+|+ +-||+||||+|..++..+.. ... .++.++.....+..
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~--~g~-~vlliD~D~~~~~~ 45 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSR--SGY-NIAVVDTDPQMSLT 45 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHH--TTC-CEEEEECCTTCHHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHH--CCC-eEEEEECCCCCCHH
Confidence 578887 57999999999999887422 222 36667765444433
No 483
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=92.64 E-value=0.091 Score=46.23 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
...|+++|.+|+|||||...+...
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC
Confidence 356999999999999999999875
No 484
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=92.61 E-value=0.073 Score=47.73 Aligned_cols=25 Identities=20% Similarity=0.409 Sum_probs=22.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
....|+|+|.+|+|||||..++...
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4578999999999999999999875
No 485
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=92.58 E-value=0.09 Score=43.92 Aligned_cols=25 Identities=16% Similarity=0.117 Sum_probs=22.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
...+|+|+|++|+||+|+|..+.+.
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~ 34 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSR 34 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHHH
Confidence 4579999999999999999988764
No 486
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=92.56 E-value=0.046 Score=46.04 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
....|+|+|.+|+|||||...+...
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 4567999999999999999999876
No 487
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=92.54 E-value=0.057 Score=51.36 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.-.+++|+|+.|+|||||++.++.-
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCc
Confidence 3468999999999999999999876
No 488
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=92.50 E-value=0.15 Score=45.07 Aligned_cols=25 Identities=24% Similarity=0.444 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
....|+|+|.+|+|||||...+...
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~ 49 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCC
Confidence 4568999999999999999999876
No 489
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=92.50 E-value=0.12 Score=45.04 Aligned_cols=25 Identities=24% Similarity=0.448 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
....|+|+|.+|+|||||...+...
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4567999999999999999999876
No 490
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=92.46 E-value=0.07 Score=52.57 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=22.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
...+|.|.|++|+||||+|+.+.+.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~ 75 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEY 75 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999887
No 491
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=92.45 E-value=0.083 Score=45.85 Aligned_cols=25 Identities=28% Similarity=0.272 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 129 KVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 129 ~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
....|+|+|.+|+|||||...+...
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHhCC
Confidence 3467999999999999999999865
No 492
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=92.40 E-value=0.063 Score=50.35 Aligned_cols=27 Identities=26% Similarity=0.313 Sum_probs=21.7
Q ss_pred CCCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 127 GDKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 127 ~~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.+...-++|+|..|+|||||.+.++..
T Consensus 39 ~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 39 QGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp -CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 343334999999999999999999875
No 493
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=92.32 E-value=0.071 Score=46.50 Aligned_cols=44 Identities=16% Similarity=0.252 Sum_probs=30.2
Q ss_pred CCccEEEEEc-CCCCcHHHHHHHHHcCcccccCCCccEEEEEeCCCcCH
Q 038454 128 DKVTKIGVWG-MGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQPLDL 175 (359)
Q Consensus 128 ~~~~vi~I~G-~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~ 175 (359)
...++|+|++ -||+||||+|..++..+. . . ..++-|+.....+.
T Consensus 25 ~~~~vI~v~s~kGGvGKTT~a~~LA~~la--~-g-~~VlliD~D~~~~~ 69 (267)
T 3k9g_A 25 KKPKIITIASIKGGVGKSTSAIILATLLS--K-N-NKVLLIDMDTQASI 69 (267)
T ss_dssp -CCEEEEECCSSSSSCHHHHHHHHHHHHT--T-T-SCEEEEEECTTCHH
T ss_pred CCCeEEEEEeCCCCchHHHHHHHHHHHHH--C-C-CCEEEEECCCCCCH
Confidence 3567888865 699999999999998842 2 2 34666776554433
No 494
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=92.28 E-value=0.21 Score=45.70 Aligned_cols=27 Identities=33% Similarity=0.233 Sum_probs=21.4
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHcCc
Q 038454 128 DKVTKIGVWGMGGFGKTAIMRHINNRP 154 (359)
Q Consensus 128 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 154 (359)
+...++...|-||+||||+|..++..+
T Consensus 16 ~~~~i~v~sgKGGvGKTTvaanLA~~l 42 (354)
T 2woj_A 16 TTHKWIFVGGKGGVGKTTSSCSIAIQM 42 (354)
T ss_dssp SSCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHH
Confidence 344667777899999999999887664
No 495
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=92.25 E-value=0.097 Score=48.29 Aligned_cols=41 Identities=17% Similarity=0.289 Sum_probs=29.7
Q ss_pred CCccEEEEEc-CCCCcHHHHHHHHHcCcccccCCCccEEEEEeCC
Q 038454 128 DKVTKIGVWG-MGGFGKTAIMRHINNRPQEETNEFSDVIWVTVSQ 171 (359)
Q Consensus 128 ~~~~vi~I~G-~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~ 171 (359)
.+.++|+|+| -||+||||+|..++..+.. . . ..++.++...
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~-~-g-~rVlliD~D~ 182 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHAN-M-G-KKVFYLNIEQ 182 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHH-H-T-CCEEEEECCT
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHh-C-C-CCEEEEECCC
Confidence 3578899986 8999999999999887422 1 1 2367777663
No 496
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=92.23 E-value=0.17 Score=45.81 Aligned_cols=28 Identities=29% Similarity=0.258 Sum_probs=22.5
Q ss_pred CCCccEEEEEcCCCCcHHHHHHHHHcCc
Q 038454 127 GDKVTKIGVWGMGGFGKTAIMRHINNRP 154 (359)
Q Consensus 127 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 154 (359)
++...++.+.|-||+||||+|..++..+
T Consensus 16 ~~~~~i~v~sgkGGvGKTTva~~LA~~l 43 (329)
T 2woo_A 16 QTSLKWIFVGGKGGVGKTTTSCSLAIQM 43 (329)
T ss_dssp CTTCCEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHH
Confidence 3445677788999999999999988763
No 497
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=92.20 E-value=0.087 Score=42.98 Aligned_cols=26 Identities=23% Similarity=0.437 Sum_probs=21.9
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 128 DKVTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 128 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.....|+|+|.+|+|||||...+...
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcC
Confidence 34567999999999999999998654
No 498
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=92.13 E-value=0.09 Score=46.98 Aligned_cols=24 Identities=13% Similarity=0.279 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
...|+|+|.+|+|||||..++...
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999875
No 499
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=92.12 E-value=0.092 Score=45.72 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 038454 131 TKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 131 ~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
+.|+++|.+|+|||||...+...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 56899999999999999999876
No 500
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=92.11 E-value=0.082 Score=44.63 Aligned_cols=24 Identities=25% Similarity=0.470 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHcC
Q 038454 130 VTKIGVWGMGGFGKTAIMRHINNR 153 (359)
Q Consensus 130 ~~vi~I~G~gGiGKTtLa~~v~~~ 153 (359)
.--|+|+|.+|+|||||...+.+.
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHHC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcC
Confidence 456999999999999999998865
Done!