BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038455
(170 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 31.6 bits (70), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 16/105 (15%)
Query: 44 EDDGMPSDCCDA-----WEGVMCNATTRRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPF 98
++DGM +C A ++G+ R + N T R+ Y TS +F N
Sbjct: 576 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRV-YGGHTSPTFDNNG----- 629
Query: 99 EELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSI 143
+ LD+S N +G GS+ L +LNLG N ++ SI
Sbjct: 630 -SMMFLDMSYNMLSGYIPKE----IGSMPYLFILNLGHNDISGSI 669
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 31.2 bits (69), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 16/105 (15%)
Query: 44 EDDGMPSDCCDA-----WEGVMCNATTRRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPF 98
++DGM +C A ++G+ R + N T R+ Y TS +F N
Sbjct: 579 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRV-YGGHTSPTFDNNG----- 632
Query: 99 EELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSI 143
+ LD+S N +G GS+ L +LNLG N ++ SI
Sbjct: 633 -SMMFLDMSYNMLSGYIPKE----IGSMPYLFILNLGHNDISGSI 672
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 8/80 (10%)
Query: 64 TTRRVMQLSLNY---TRRLKYYD-RTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRA 119
TTRR+ + N R L + + R + M LF E L+S++ N +
Sbjct: 131 TTRRLTHIPANLLTDMRNLSHLELRANIEEMPSHLFDDLENLESIEFGSNKLRQM----P 186
Query: 120 YDSFGSLKQLKMLNLGFNYV 139
FG + +LK LNL N +
Sbjct: 187 RGIFGKMPKLKQLNLASNQL 206
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 28.5 bits (62), Expect = 1.8, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 7/56 (12%)
Query: 90 MNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILP 145
++ FH + LDLS N TG DS +L LK L L N I+P
Sbjct: 490 IDQQAFHGLRNVNHLDLSHNSLTG-------DSMDALSHLKGLYLNMASNNIRIIP 538
Score = 26.6 bits (57), Expect = 7.0, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 17/85 (20%)
Query: 50 SDCCDAWEGVMCNATTRRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSEN 109
SDCC+ + R + L+L+Y L D+ F+E L+L +
Sbjct: 364 SDCCN-----LQLKNLRHLQYLNLSYNEPLGLEDQA------------FKECPQLELLDV 406
Query: 110 WFTGIYENRAYDSFGSLKQLKMLNL 134
FT ++ + F +L L++LNL
Sbjct: 407 AFTHLHVKAPHSPFQNLHLLRVLNL 431
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
Query: 101 LQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVND 141
LQ+L L+ N I E DSF SL L+ L+L +NY+++
Sbjct: 52 LQALVLTSNGINTIEE----DSFSSLGSLEHLDLSYNYLSN 88
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 8/100 (8%)
Query: 44 EDDGMPSDCCDAWEGVMCNATTRRVMQLSLNYTRRLKYYDRTS--ASFMNMSLFHPFEEL 101
E S CD +C ++ + + T +K D ++ ++++ S L
Sbjct: 21 ESSNQASLSCD--RNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNL 78
Query: 102 QSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVND 141
Q+L L+ N I E DSF SL L+ L+L +NY+++
Sbjct: 79 QALVLTSNGINTIEE----DSFSSLGSLEHLDLSYNYLSN 114
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 28.1 bits (61), Expect = 2.6, Method: Composition-based stats.
Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 30/111 (27%)
Query: 54 DAWEGVMCNATTRRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTG 113
+ W + + + R++ +S N R++Y D +S+F +EL+ LDLS N
Sbjct: 35 ELWTSDILSLSKLRILIISHN---RIQYLD--------ISVFKFNQELEYLDLSHNKLVK 83
Query: 114 I------------YENRAYDS------FGSLKQLKMLNLGFNYV-NDSILP 145
I A+D+ FG++ QLK L L ++ S+LP
Sbjct: 84 ISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLP 134
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 46/96 (47%), Gaps = 15/96 (15%)
Query: 44 EDDGMPSDCCDAWEGVMCNATTRRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQS 103
+D+ +PS + + G++ + + + LS +T + T S + L +
Sbjct: 337 DDNNIPSTKSNTFTGLV----SLKYLSLSKTFTSLQTLTNETFVSLAHSPLL-------T 385
Query: 104 LDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYV 139
L+L++N + I A +F L QL++L+LG N +
Sbjct: 386 LNLTKNHISKI----ANGTFSWLGQLRILDLGLNEI 417
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 26.9 bits (58), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 95 FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVND 141
F P+++L+ +DLS N + + A D+F L+ L L L N + +
Sbjct: 52 FSPYKKLRRIDLSNNQISEL----APDAFQGLRSLNSLVLYGNKITE 94
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 26.9 bits (58), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 95 FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVND 141
F P+++L+ +DLS N + + A D+F L+ L L L N + +
Sbjct: 52 FSPYKKLRRIDLSNNQISEL----APDAFQGLRSLNSLVLYGNKITE 94
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,570,500
Number of Sequences: 62578
Number of extensions: 162411
Number of successful extensions: 394
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 387
Number of HSP's gapped (non-prelim): 22
length of query: 170
length of database: 14,973,337
effective HSP length: 92
effective length of query: 78
effective length of database: 9,216,161
effective search space: 718860558
effective search space used: 718860558
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)