Query 038455
Match_columns 170
No_of_seqs 275 out of 2852
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 11:15:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038455.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038455hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03150 hypothetical protein; 99.8 6E-18 1.3E-22 144.5 11.7 138 8-169 367-508 (623)
2 PLN00113 leucine-rich repeat r 99.7 2.8E-17 6.1E-22 146.4 12.8 141 11-168 27-205 (968)
3 PF13855 LRR_8: Leucine rich r 99.2 1.9E-11 4.1E-16 73.7 2.5 61 99-163 1-61 (61)
4 PLN00113 leucine-rich repeat r 99.1 6E-11 1.3E-15 106.1 6.2 75 91-169 515-589 (968)
5 PF08263 LRRNT_2: Leucine rich 98.9 3.5E-09 7.5E-14 59.3 4.6 41 12-62 2-43 (43)
6 KOG0617 Ras suppressor protein 98.9 2.6E-10 5.6E-15 82.2 -0.8 84 65-164 32-115 (264)
7 PF13855 LRR_8: Leucine rich r 98.8 3.9E-09 8.5E-14 63.5 4.0 60 67-139 2-61 (61)
8 PLN03150 hypothetical protein; 98.8 1.2E-08 2.6E-13 87.7 6.6 90 66-168 442-532 (623)
9 PF14580 LRR_9: Leucine-rich r 98.7 2.1E-08 4.5E-13 72.9 3.6 82 67-164 43-126 (175)
10 PF14580 LRR_9: Leucine-rich r 98.6 3.7E-08 8.1E-13 71.6 3.8 80 67-164 20-101 (175)
11 KOG4194 Membrane glycoprotein 98.6 2.1E-08 4.5E-13 83.9 2.1 79 86-169 256-334 (873)
12 KOG4237 Extracellular matrix p 98.5 7.1E-09 1.5E-13 82.9 -2.0 86 66-164 67-153 (498)
13 PF12799 LRR_4: Leucine Rich r 98.5 7.1E-08 1.5E-12 54.2 2.6 36 100-140 2-37 (44)
14 KOG0472 Leucine-rich repeat pr 98.5 5.3E-08 1.1E-12 78.3 2.6 74 92-169 451-544 (565)
15 KOG0617 Ras suppressor protein 98.5 8.5E-09 1.8E-13 74.4 -2.8 70 94-169 97-167 (264)
16 KOG4194 Membrane glycoprotein 98.4 1.6E-07 3.6E-12 78.7 2.8 74 87-164 161-234 (873)
17 PF12799 LRR_4: Leucine Rich r 98.3 9.5E-07 2.1E-11 49.5 3.2 40 127-168 1-40 (44)
18 KOG0444 Cytoskeletal regulator 98.2 2.2E-07 4.8E-12 78.7 -0.1 68 95-168 74-142 (1255)
19 PRK15387 E3 ubiquitin-protein 98.2 1.6E-06 3.5E-11 75.9 4.3 60 100-168 403-462 (788)
20 KOG0444 Cytoskeletal regulator 98.2 2.8E-07 6E-12 78.1 -0.4 82 67-163 104-185 (1255)
21 KOG0618 Serine/threonine phosp 98.2 1.8E-07 3.9E-12 81.6 -1.9 90 56-164 376-465 (1081)
22 PRK15370 E3 ubiquitin-protein 98.1 4E-05 8.6E-10 67.4 11.4 35 8-54 58-96 (754)
23 KOG0472 Leucine-rich repeat pr 98.1 4E-07 8.7E-12 73.4 -1.6 68 90-164 243-310 (565)
24 PLN03210 Resistant to P. syrin 98.0 2E-05 4.4E-10 72.3 7.8 61 96-161 631-691 (1153)
25 KOG4237 Extracellular matrix p 98.0 2E-06 4.3E-11 69.2 0.8 68 93-164 268-335 (498)
26 PLN03210 Resistant to P. syrin 98.0 2.3E-05 5.1E-10 72.0 7.4 70 94-168 652-721 (1153)
27 KOG0618 Serine/threonine phosp 97.9 3.2E-06 7E-11 74.0 0.3 85 68-169 47-131 (1081)
28 KOG4579 Leucine-rich repeat (L 97.8 1.6E-06 3.5E-11 60.5 -1.7 88 65-168 52-139 (177)
29 COG4886 Leucine-rich repeat (L 97.8 1.4E-05 3.1E-10 64.9 2.8 68 95-169 135-203 (394)
30 PRK15370 E3 ubiquitin-protein 97.8 5.7E-05 1.2E-09 66.4 6.4 58 100-168 242-299 (754)
31 KOG1259 Nischarin, modulator o 97.8 6.1E-06 1.3E-10 64.6 0.3 38 97-140 305-342 (490)
32 KOG2739 Leucine-rich acidic nu 97.7 2.4E-05 5.3E-10 59.6 2.9 94 66-164 33-129 (260)
33 cd00116 LRR_RI Leucine-rich re 97.7 1.8E-05 3.9E-10 62.0 2.3 65 96-164 162-234 (319)
34 KOG0532 Leucine-rich repeat (L 97.7 3.3E-06 7.2E-11 70.7 -2.8 69 92-168 182-250 (722)
35 KOG4579 Leucine-rich repeat (L 97.6 7.8E-06 1.7E-10 57.1 -1.3 65 95-164 49-113 (177)
36 cd00116 LRR_RI Leucine-rich re 97.6 2.7E-05 5.9E-10 61.0 1.1 66 99-164 137-206 (319)
37 PRK15387 E3 ubiquitin-protein 97.5 0.0002 4.3E-09 63.1 5.8 14 151-164 302-315 (788)
38 KOG1259 Nischarin, modulator o 97.5 3.9E-05 8.4E-10 60.2 0.8 60 98-164 283-342 (490)
39 KOG1644 U2-associated snRNP A' 97.5 0.00018 3.9E-09 53.3 4.2 82 67-164 43-126 (233)
40 KOG4658 Apoptotic ATPase [Sign 97.5 3.7E-05 8E-10 68.6 0.7 73 90-167 562-634 (889)
41 KOG0531 Protein phosphatase 1, 97.3 0.00016 3.6E-09 59.4 2.3 62 95-164 114-175 (414)
42 KOG0532 Leucine-rich repeat (L 97.2 1.8E-05 3.9E-10 66.4 -3.4 47 101-153 145-191 (722)
43 COG4886 Leucine-rich repeat (L 97.2 0.00012 2.6E-09 59.5 0.6 64 93-162 157-220 (394)
44 KOG4658 Apoptotic ATPase [Sign 97.2 0.00017 3.7E-09 64.5 1.7 65 92-161 588-652 (889)
45 KOG1859 Leucine-rich repeat pr 97.0 6.5E-05 1.4E-09 64.9 -2.3 65 93-164 203-267 (1096)
46 KOG0531 Protein phosphatase 1, 96.9 0.00056 1.2E-08 56.3 2.2 65 93-164 89-153 (414)
47 PF00560 LRR_1: Leucine Rich R 96.5 0.00069 1.5E-08 31.9 0.1 16 101-117 2-17 (22)
48 KOG1644 U2-associated snRNP A' 96.4 0.0039 8.3E-08 46.4 3.5 60 99-164 42-101 (233)
49 KOG1859 Leucine-rich repeat pr 96.4 0.00051 1.1E-08 59.6 -1.2 61 96-164 184-245 (1096)
50 PF00560 LRR_1: Leucine Rich R 96.3 0.0027 5.8E-08 29.9 1.5 22 128-150 1-22 (22)
51 KOG2739 Leucine-rich acidic nu 96.2 0.0037 8E-08 47.9 2.4 63 96-164 40-104 (260)
52 KOG2982 Uncharacterized conser 96.1 0.0011 2.4E-08 52.1 -0.8 86 67-163 72-158 (418)
53 KOG2123 Uncharacterized conser 96.0 0.0003 6.5E-09 54.7 -4.1 61 94-157 58-123 (388)
54 PF13504 LRR_7: Leucine rich r 95.8 0.0042 9.1E-08 27.3 0.9 13 152-164 2-14 (17)
55 KOG3665 ZYG-1-like serine/thre 95.8 0.0046 9.9E-08 54.2 1.7 70 95-164 169-263 (699)
56 KOG3207 Beta-tubulin folding c 95.7 0.0041 8.9E-08 51.0 0.8 66 96-164 243-314 (505)
57 smart00369 LRR_TYP Leucine-ric 95.5 0.012 2.5E-07 28.7 1.8 18 151-169 2-19 (26)
58 smart00370 LRR Leucine-rich re 95.5 0.012 2.5E-07 28.7 1.8 18 151-169 2-19 (26)
59 KOG0473 Leucine-rich repeat pr 95.3 0.00033 7.3E-09 53.2 -6.2 85 64-164 40-124 (326)
60 KOG3207 Beta-tubulin folding c 94.9 0.015 3.3E-07 47.8 1.9 72 93-164 265-339 (505)
61 KOG1909 Ran GTPase-activating 94.8 0.012 2.5E-07 47.1 0.9 71 94-164 208-283 (382)
62 KOG3665 ZYG-1-like serine/thre 94.3 0.028 6.1E-07 49.4 2.3 52 95-146 216-269 (699)
63 COG5238 RNA1 Ran GTPase-activa 93.3 0.063 1.4E-06 42.0 2.3 71 94-164 87-170 (388)
64 smart00369 LRR_TYP Leucine-ric 93.2 0.11 2.3E-06 25.1 2.4 14 127-140 2-15 (26)
65 smart00370 LRR Leucine-rich re 93.2 0.11 2.3E-06 25.1 2.4 14 127-140 2-15 (26)
66 KOG2982 Uncharacterized conser 92.8 0.043 9.2E-07 43.5 0.7 66 97-164 69-134 (418)
67 KOG0473 Leucine-rich repeat pr 92.6 0.0017 3.7E-08 49.4 -7.0 72 91-169 34-105 (326)
68 KOG2123 Uncharacterized conser 92.1 0.0064 1.4E-07 47.5 -4.5 69 93-168 35-105 (388)
69 smart00364 LRR_BAC Leucine-ric 92.1 0.11 2.3E-06 25.5 1.4 16 152-168 3-18 (26)
70 PRK15386 type III secretion pr 91.2 0.46 1E-05 39.3 5.0 10 100-109 95-104 (426)
71 PF13306 LRR_5: Leucine rich r 91.0 0.41 8.8E-06 32.1 4.0 63 91-160 50-112 (129)
72 PF13306 LRR_5: Leucine rich r 89.2 0.72 1.6E-05 30.9 4.0 67 89-161 25-91 (129)
73 KOG1909 Ran GTPase-activating 89.0 0.2 4.2E-06 40.3 1.2 67 97-164 155-226 (382)
74 PRK15386 type III secretion pr 88.9 0.6 1.3E-05 38.7 3.9 76 67-169 53-132 (426)
75 PF13516 LRR_6: Leucine Rich r 88.2 0.28 6E-06 23.1 1.0 16 150-165 1-16 (24)
76 smart00365 LRR_SD22 Leucine-ri 87.3 0.58 1.3E-05 22.8 1.9 15 126-140 1-15 (26)
77 KOG2120 SCF ubiquitin ligase, 86.0 0.34 7.4E-06 38.5 0.9 59 96-160 310-372 (419)
78 smart00368 LRR_RI Leucine rich 82.4 1.2 2.6E-05 21.9 1.7 14 151-164 2-15 (28)
79 KOG3864 Uncharacterized conser 80.7 0.2 4.4E-06 37.3 -2.1 34 126-159 150-184 (221)
80 COG5238 RNA1 Ran GTPase-activa 78.2 2.1 4.6E-05 33.8 2.6 94 66-164 30-133 (388)
81 KOG3763 mRNA export factor TAP 69.6 2.2 4.7E-05 36.5 0.9 14 99-112 218-231 (585)
82 KOG2120 SCF ubiquitin ligase, 62.9 0.65 1.4E-05 37.0 -3.1 62 97-162 208-271 (419)
83 KOG3763 mRNA export factor TAP 53.5 6.7 0.00014 33.7 1.1 65 65-142 217-285 (585)
84 TIGR00864 PCC polycystin catio 44.4 14 0.0003 37.7 1.8 28 87-114 7-34 (2740)
85 smart00367 LRR_CC Leucine-rich 39.9 21 0.00046 16.7 1.3 11 99-109 2-12 (26)
86 KOG1947 Leucine rich repeat pr 26.2 43 0.00092 27.4 1.7 37 126-162 268-306 (482)
87 KOG4308 LRR-containing protein 23.5 7.2 0.00016 33.0 -3.4 16 97-112 202-217 (478)
88 TIGR00864 PCC polycystin catio 22.6 56 0.0012 33.8 1.9 32 105-140 1-32 (2740)
No 1
>PLN03150 hypothetical protein; Provisional
Probab=99.76 E-value=6e-18 Score=144.50 Aligned_cols=138 Identities=30% Similarity=0.371 Sum_probs=112.1
Q ss_pred cCCcHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEecCC--C--CCeEEeecCCcCccceec
Q 038455 8 KACLETERTALLAIKSFFISVSDVGYDDKILPSWVGEDDGMPSDCCDAWEGVMCNAT--T--RRVMQLSLNYTRRLKYYD 83 (170)
Q Consensus 8 ~~~~~~~~~aL~~~~~~~~~~~~~~~~~~~l~~W~~~~~~~~~~~c~~w~gv~c~~~--~--~~v~~L~L~~~~~l~~~~ 83 (170)
..+.+.|..||+.+|..+..+. ..+|.+ +.+ ....|. |.||.|... . ..|+.|+|+++. +.+.
T Consensus 367 ~~t~~~~~~aL~~~k~~~~~~~--------~~~W~g-~~C-~p~~~~-w~Gv~C~~~~~~~~~~v~~L~L~~n~-L~g~- 433 (623)
T PLN03150 367 SKTLLEEVSALQTLKSSLGLPL--------RFGWNG-DPC-VPQQHP-WSGADCQFDSTKGKWFIDGLGLDNQG-LRGF- 433 (623)
T ss_pred cccCchHHHHHHHHHHhcCCcc--------cCCCCC-CCC-CCcccc-cccceeeccCCCCceEEEEEECCCCC-cccc-
Confidence 3466789999999999985443 247976 100 001126 999999521 1 258899999887 5443
Q ss_pred CCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcC
Q 038455 84 RTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKI 163 (170)
Q Consensus 84 ~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l 163 (170)
.+..+..|++|+.|+|++|.+.|.+|. .++.+++|+.|+|++|+++|.+|+.++.+++|+.|+|++|++
T Consensus 434 -------ip~~i~~L~~L~~L~Ls~N~l~g~iP~----~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l 502 (623)
T PLN03150 434 -------IPNDISKLRHLQSINLSGNSIRGNIPP----SLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSL 502 (623)
T ss_pred -------CCHHHhCCCCCCEEECCCCcccCcCCh----HHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcc
Confidence 355688999999999999999999998 899999999999999999999999999999999999999999
Q ss_pred cccCCC
Q 038455 164 EGSRTK 169 (170)
Q Consensus 164 ~g~iP~ 169 (170)
+|.+|.
T Consensus 503 ~g~iP~ 508 (623)
T PLN03150 503 SGRVPA 508 (623)
T ss_pred cccCCh
Confidence 999996
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.73 E-value=2.8e-17 Score=146.39 Aligned_cols=141 Identities=32% Similarity=0.477 Sum_probs=84.5
Q ss_pred cHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEecCCCCCeEEeecCCcC-------------
Q 038455 11 LETERTALLAIKSFFISVSDVGYDDKILPSWVGEDDGMPSDCCDAWEGVMCNATTRRVMQLSLNYTR------------- 77 (170)
Q Consensus 11 ~~~~~~aL~~~~~~~~~~~~~~~~~~~l~~W~~~~~~~~~~~c~~w~gv~c~~~~~~v~~L~L~~~~------------- 77 (170)
.+.|+.||++||..+.++. ..+.+|+. ..+||. |.||.|+. .++|+.|+|+++.
T Consensus 27 ~~~~~~~l~~~~~~~~~~~------~~~~~w~~-----~~~~c~-w~gv~c~~-~~~v~~L~L~~~~i~~~~~~~~~~l~ 93 (968)
T PLN00113 27 HAEELELLLSFKSSINDPL------KYLSNWNS-----SADVCL-WQGITCNN-SSRVVSIDLSGKNISGKISSAIFRLP 93 (968)
T ss_pred CHHHHHHHHHHHHhCCCCc------ccCCCCCC-----CCCCCc-CcceecCC-CCcEEEEEecCCCccccCChHHhCCC
Confidence 5689999999999997665 46789986 468999 99999985 5689999998765
Q ss_pred ccceecCCCCC---CCCCCcCCCCCCCCEEeccCCccCc----------------------cccCccccccCCCCCCCEE
Q 038455 78 RLKYYDRTSAS---FMNMSLFHPFEELQSLDLSENWFTG----------------------IYENRAYDSFGSLKQLKML 132 (170)
Q Consensus 78 ~l~~~~~~~~~---~~~~~~~~~l~~L~~L~ls~N~l~~----------------------~~p~~~~~~~~~l~~L~~L 132 (170)
+|+.+++..+. .++...+..+++|++|++++|.+++ .+|. .++.+++|+.|
T Consensus 94 ~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~----~~~~l~~L~~L 169 (968)
T PLN00113 94 YIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPN----DIGSFSSLKVL 169 (968)
T ss_pred CCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCCh----HHhcCCCCCEE
Confidence 12222222111 1222223344455555555444443 3333 44555555555
Q ss_pred ECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccCC
Q 038455 133 NLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRT 168 (170)
Q Consensus 133 ~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP 168 (170)
++++|.+.+.+|..+..+++|++|+|++|.+++.+|
T Consensus 170 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p 205 (968)
T PLN00113 170 DLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIP 205 (968)
T ss_pred ECccCcccccCChhhhhCcCCCeeeccCCCCcCcCC
Confidence 555555555555555555555555555555554444
No 3
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.15 E-value=1.9e-11 Score=73.71 Aligned_cols=61 Identities=36% Similarity=0.447 Sum_probs=52.2
Q ss_pred CCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcC
Q 038455 99 EELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKI 163 (170)
Q Consensus 99 ~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l 163 (170)
++|++|++++|+++...+. .|..+++|++|++++|.+....|..|..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~----~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPD----SFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTT----TTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHH----HHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4688999999999886556 788899999999999999876677889999999999999875
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.14 E-value=6e-11 Score=106.12 Aligned_cols=75 Identities=31% Similarity=0.384 Sum_probs=62.3
Q ss_pred CCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccCCC
Q 038455 91 NMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRTK 169 (170)
Q Consensus 91 ~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP~ 169 (170)
.+..+..+++|++|++++|.+++.+|. .+..+++|+.|+|++|++.+.+|..+..++.|+.|++++|+++|.+|.
T Consensus 515 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~----~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~ 589 (968)
T PLN00113 515 IPDELSSCKKLVSLDLSHNQLSGQIPA----SFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS 589 (968)
T ss_pred CChHHcCccCCCEEECCCCcccccCCh----hHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCC
Confidence 345677788888888888888888887 788888888888888888888888888888888888888888888885
No 5
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.89 E-value=3.5e-09 Score=59.30 Aligned_cols=41 Identities=41% Similarity=0.776 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhhccC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEec
Q 038455 12 ETERTALLAIKSFFIS-VSDVGYDDKILPSWVGEDDGMPSDCCDAWEGVMCN 62 (170)
Q Consensus 12 ~~~~~aL~~~~~~~~~-~~~~~~~~~~l~~W~~~~~~~~~~~c~~w~gv~c~ 62 (170)
+.|++||++||+++.. +. ..+.+|+... ..++|+ |.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~------~~l~~W~~~~---~~~~C~-W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPS------GVLSSWNPSS---DSDPCS-WSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-------CCCTT--TT-----S-CCC-STTEEE-
T ss_pred cHHHHHHHHHHHhcccccC------cccccCCCcC---CCCCee-eccEEeC
Confidence 5799999999999974 54 5799999810 278999 9999995
No 6
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.87 E-value=2.6e-10 Score=82.18 Aligned_cols=84 Identities=26% Similarity=0.448 Sum_probs=66.1
Q ss_pred CCCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCCh
Q 038455 65 TRRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSIL 144 (170)
Q Consensus 65 ~~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p 144 (170)
-..++.|.|+++. ++.. ++.+..|.+|+.|++++|++.. +|. .++.+++|+.|+++-|++. ..|
T Consensus 32 ~s~ITrLtLSHNK-l~~v---------ppnia~l~nlevln~~nnqie~-lp~----~issl~klr~lnvgmnrl~-~lp 95 (264)
T KOG0617|consen 32 MSNITRLTLSHNK-LTVV---------PPNIAELKNLEVLNLSNNQIEE-LPT----SISSLPKLRILNVGMNRLN-ILP 95 (264)
T ss_pred hhhhhhhhcccCc-eeec---------CCcHHHhhhhhhhhcccchhhh-cCh----hhhhchhhhheecchhhhh-cCc
Confidence 3468888899888 5444 4556778888888888888876 565 7888888888888888887 788
Q ss_pred hhccCCCCCCEEeCCCCcCc
Q 038455 145 PYLNTLTSLTTLNLSYNKIE 164 (170)
Q Consensus 145 ~~~~~l~~L~~L~L~~N~l~ 164 (170)
..|+.++.|++|||.+|++.
T Consensus 96 rgfgs~p~levldltynnl~ 115 (264)
T KOG0617|consen 96 RGFGSFPALEVLDLTYNNLN 115 (264)
T ss_pred cccCCCchhhhhhccccccc
Confidence 88888888888888888775
No 7
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.84 E-value=3.9e-09 Score=63.46 Aligned_cols=60 Identities=30% Similarity=0.434 Sum_probs=52.4
Q ss_pred CeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCC
Q 038455 67 RVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYV 139 (170)
Q Consensus 67 ~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l 139 (170)
+++.|+++++. ++.+ ++..|..+++|++|++++|.++...|. .|..+++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~-l~~i--------~~~~f~~l~~L~~L~l~~N~l~~i~~~----~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNK-LTEI--------PPDSFSNLPNLETLDLSNNNLTSIPPD----AFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSST-ESEE--------CTTTTTTGTTESEEEETSSSESEEETT----TTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCC-CCcc--------CHHHHcCCCCCCEeEccCCccCccCHH----HHcCCCCCCEEeCcCCcC
Confidence 57888999887 5444 667899999999999999999987777 899999999999999975
No 8
>PLN03150 hypothetical protein; Provisional
Probab=98.79 E-value=1.2e-08 Score=87.68 Aligned_cols=90 Identities=23% Similarity=0.257 Sum_probs=74.8
Q ss_pred CCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChh
Q 038455 66 RRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILP 145 (170)
Q Consensus 66 ~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~ 145 (170)
.+++.|+|+++. +.+. .+..++.+++|+.|+|++|++++.+|. .++.+++|+.|+|++|.++|.+|.
T Consensus 442 ~~L~~L~Ls~N~-l~g~--------iP~~~~~l~~L~~LdLs~N~lsg~iP~----~l~~L~~L~~L~Ls~N~l~g~iP~ 508 (623)
T PLN03150 442 RHLQSINLSGNS-IRGN--------IPPSLGSITSLEVLDLSYNSFNGSIPE----SLGQLTSLRILNLNGNSLSGRVPA 508 (623)
T ss_pred CCCCEEECCCCc-ccCc--------CChHHhCCCCCCEEECCCCCCCCCCch----HHhcCCCCCEEECcCCcccccCCh
Confidence 457778888776 4332 355688999999999999999999998 999999999999999999999999
Q ss_pred hccCC-CCCCEEeCCCCcCcccCC
Q 038455 146 YLNTL-TSLTTLNLSYNKIEGSRT 168 (170)
Q Consensus 146 ~~~~l-~~L~~L~L~~N~l~g~iP 168 (170)
.++.+ .++..+++.+|.....+|
T Consensus 509 ~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 509 ALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred HHhhccccCceEEecCCccccCCC
Confidence 88764 467889999997654444
No 9
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.66 E-value=2.1e-08 Score=72.93 Aligned_cols=82 Identities=27% Similarity=0.344 Sum_probs=35.3
Q ss_pred CeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCcccccc-CCCCCCCEEECCCCCCCCC-Ch
Q 038455 67 RVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSF-GSLKQLKMLNLGFNYVNDS-IL 144 (170)
Q Consensus 67 ~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~-~~l~~L~~L~Ls~N~l~g~-~p 144 (170)
+++.|+|+++. ++.+ ..+..+++|+.|++++|.++.. .. .+ ..+++|+.|++++|+|... .-
T Consensus 43 ~L~~L~Ls~N~-I~~l----------~~l~~L~~L~~L~L~~N~I~~i-~~----~l~~~lp~L~~L~L~~N~I~~l~~l 106 (175)
T PF14580_consen 43 KLEVLDLSNNQ-ITKL----------EGLPGLPRLKTLDLSNNRISSI-SE----GLDKNLPNLQELYLSNNKISDLNEL 106 (175)
T ss_dssp T--EEE-TTS---S------------TT----TT--EEE--SS---S--CH----HHHHH-TT--EEE-TTS---SCCCC
T ss_pred CCCEEECCCCC-Cccc----------cCccChhhhhhcccCCCCCCcc-cc----chHHhCCcCCEEECcCCcCCChHHh
Confidence 46667777776 4333 3466788888899999988864 32 33 3578888999999888642 22
Q ss_pred hhccCCCCCCEEeCCCCcCc
Q 038455 145 PYLNTLTSLTTLNLSYNKIE 164 (170)
Q Consensus 145 ~~~~~l~~L~~L~L~~N~l~ 164 (170)
..+..+++|++|+|.+|+++
T Consensus 107 ~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 107 EPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp GGGGG-TT--EEE-TT-GGG
T ss_pred HHHHcCCCcceeeccCCccc
Confidence 46778888999999988886
No 10
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.61 E-value=3.7e-08 Score=71.62 Aligned_cols=80 Identities=34% Similarity=0.426 Sum_probs=28.8
Q ss_pred CeEEeecCCcCccceecCCCCCCCCCCcCC-CCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChh
Q 038455 67 RVMQLSLNYTRRLKYYDRTSASFMNMSLFH-PFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILP 145 (170)
Q Consensus 67 ~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~-~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~ 145 (170)
++.+|+|.++. ++.+ ..++ .+.+|+.|++++|.++. ++ .+..++.|+.|++++|+|+ .+.+
T Consensus 20 ~~~~L~L~~n~-I~~I----------e~L~~~l~~L~~L~Ls~N~I~~-l~-----~l~~L~~L~~L~L~~N~I~-~i~~ 81 (175)
T PF14580_consen 20 KLRELNLRGNQ-ISTI----------ENLGATLDKLEVLDLSNNQITK-LE-----GLPGLPRLKTLDLSNNRIS-SISE 81 (175)
T ss_dssp ---------------------------S--TT-TT--EEE-TTS--S---T-----T----TT--EEE--SS----S-CH
T ss_pred ccccccccccc-cccc----------cchhhhhcCCCEEECCCCCCcc-cc-----CccChhhhhhcccCCCCCC-cccc
Confidence 56788888887 4332 2344 57889999999999987 44 6888999999999999999 4544
Q ss_pred hc-cCCCCCCEEeCCCCcCc
Q 038455 146 YL-NTLTSLTTLNLSYNKIE 164 (170)
Q Consensus 146 ~~-~~l~~L~~L~L~~N~l~ 164 (170)
.+ ..+++|+.|++++|+|.
T Consensus 82 ~l~~~lp~L~~L~L~~N~I~ 101 (175)
T PF14580_consen 82 GLDKNLPNLQELYLSNNKIS 101 (175)
T ss_dssp HHHHH-TT--EEE-TTS---
T ss_pred chHHhCCcCCEEECcCCcCC
Confidence 44 46899999999999986
No 11
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.59 E-value=2.1e-08 Score=83.91 Aligned_cols=79 Identities=23% Similarity=0.317 Sum_probs=66.5
Q ss_pred CCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcc
Q 038455 86 SASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEG 165 (170)
Q Consensus 86 ~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g 165 (170)
.+..+..+.|..|.+++.|+|+.|+++..-.. .+.+|+.|+.|+||+|.|....++.+...++|+.|+|++|+|+
T Consensus 256 ~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g----~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~- 330 (873)
T KOG4194|consen 256 DISKLDDGAFYGLEKMEHLNLETNRLQAVNEG----WLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRIT- 330 (873)
T ss_pred CcccccCcceeeecccceeecccchhhhhhcc----cccccchhhhhccchhhhheeecchhhhcccceeEeccccccc-
Confidence 34566677888888999999999999876666 7888999999999999998888888989999999999999998
Q ss_pred cCCC
Q 038455 166 SRTK 169 (170)
Q Consensus 166 ~iP~ 169 (170)
++|+
T Consensus 331 ~l~~ 334 (873)
T KOG4194|consen 331 RLDE 334 (873)
T ss_pred cCCh
Confidence 5654
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.53 E-value=7.1e-09 Score=82.89 Aligned_cols=86 Identities=29% Similarity=0.342 Sum_probs=66.9
Q ss_pred CCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEEC-CCCCCCCCCh
Q 038455 66 RRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNL-GFNYVNDSIL 144 (170)
Q Consensus 66 ~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~L-s~N~l~g~~p 144 (170)
...++|+|+.++ |..+++..|+.+++|+.|||++|.|+.+-|. .|..+++|..|-+ ++|+|+...-
T Consensus 67 ~~tveirLdqN~---------I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~----AF~GL~~l~~Lvlyg~NkI~~l~k 133 (498)
T KOG4237|consen 67 PETVEIRLDQNQ---------ISSIPPGAFKTLHRLRRLDLSKNNISFIAPD----AFKGLASLLSLVLYGNNKITDLPK 133 (498)
T ss_pred CcceEEEeccCC---------cccCChhhccchhhhceecccccchhhcChH----hhhhhHhhhHHHhhcCCchhhhhh
Confidence 356788888777 6777899999999999999999999998887 8888887777665 4488884444
Q ss_pred hhccCCCCCCEEeCCCCcCc
Q 038455 145 PYLNTLTSLTTLNLSYNKIE 164 (170)
Q Consensus 145 ~~~~~l~~L~~L~L~~N~l~ 164 (170)
..|++|..|+.|.+.-|++.
T Consensus 134 ~~F~gL~slqrLllNan~i~ 153 (498)
T KOG4237|consen 134 GAFGGLSSLQRLLLNANHIN 153 (498)
T ss_pred hHhhhHHHHHHHhcChhhhc
Confidence 56777777777777766665
No 13
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.53 E-value=7.1e-08 Score=54.18 Aligned_cols=36 Identities=36% Similarity=0.481 Sum_probs=16.6
Q ss_pred CCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCC
Q 038455 100 ELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVN 140 (170)
Q Consensus 100 ~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~ 140 (170)
+|++|++++|+|+. +|+ .+.++++|+.|++++|+|+
T Consensus 2 ~L~~L~l~~N~i~~-l~~----~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITD-LPP----ELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SS-HGG----HGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcc-cCc----hHhCCCCCCEEEecCCCCC
Confidence 34555555555543 332 3455555555555555544
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.52 E-value=5.3e-08 Score=78.33 Aligned_cols=74 Identities=27% Similarity=0.374 Sum_probs=58.8
Q ss_pred CCcCCCCCCCCEEeccCCccCccccCccc--------------------cccCCCCCCCEEECCCCCCCCCChhhccCCC
Q 038455 92 MSLFHPFEELQSLDLSENWFTGIYENRAY--------------------DSFGSLKQLKMLNLGFNYVNDSILPYLNTLT 151 (170)
Q Consensus 92 ~~~~~~l~~L~~L~ls~N~l~~~~p~~~~--------------------~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~ 151 (170)
|.+++.+..|+.|+++.|+|.. +|..-+ ..+.++.+|..|||.+|.+. .+|+.+++|+
T Consensus 451 P~e~~~lv~Lq~LnlS~NrFr~-lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~Lgnmt 528 (565)
T KOG0472|consen 451 PEEMGSLVRLQTLNLSFNRFRM-LPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMT 528 (565)
T ss_pred chhhhhhhhhheeccccccccc-chHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhcccc
Confidence 4556777778888888888764 332000 14788899999999999999 8999999999
Q ss_pred CCCEEeCCCCcCcccCCC
Q 038455 152 SLTTLNLSYNKIEGSRTK 169 (170)
Q Consensus 152 ~L~~L~L~~N~l~g~iP~ 169 (170)
+|++|.+++|+|+ .|+
T Consensus 529 nL~hLeL~gNpfr--~Pr 544 (565)
T KOG0472|consen 529 NLRHLELDGNPFR--QPR 544 (565)
T ss_pred ceeEEEecCCccC--CCH
Confidence 9999999999998 554
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.46 E-value=8.5e-09 Score=74.45 Aligned_cols=70 Identities=31% Similarity=0.363 Sum_probs=36.3
Q ss_pred cCCCCCCCCEEeccCCccC-ccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccCCC
Q 038455 94 LFHPFEELQSLDLSENWFT-GIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRTK 169 (170)
Q Consensus 94 ~~~~l~~L~~L~ls~N~l~-~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP~ 169 (170)
.|+.++.|+.|||+.|++. ..+|. .|..++.|+.|+|+.|.|. .+|+.++++++|+.|.+..|.+- ++|+
T Consensus 97 gfgs~p~levldltynnl~e~~lpg----nff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpk 167 (264)
T KOG0617|consen 97 GFGSFPALEVLDLTYNNLNENSLPG----NFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPK 167 (264)
T ss_pred ccCCCchhhhhhccccccccccCCc----chhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcH
Confidence 3444444444444444442 22333 3444444444444444444 45666666666666666666665 4554
No 16
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.40 E-value=1.6e-07 Score=78.66 Aligned_cols=74 Identities=26% Similarity=0.313 Sum_probs=54.4
Q ss_pred CCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCc
Q 038455 87 ASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIE 164 (170)
Q Consensus 87 ~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~ 164 (170)
++.++.+.|..=.++++|+|++|.|+..-.. .|..+.+|..|.|+.|+++...+..|+++++|+.|+|..|+|.
T Consensus 161 is~i~~~sfp~~~ni~~L~La~N~It~l~~~----~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ir 234 (873)
T KOG4194|consen 161 ISEIPKPSFPAKVNIKKLNLASNRITTLETG----HFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIR 234 (873)
T ss_pred hhcccCCCCCCCCCceEEeeccccccccccc----cccccchheeeecccCcccccCHHHhhhcchhhhhhcccccee
Confidence 3445555566666788888888888765444 6777788888888888888555557777888888888888875
No 17
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.27 E-value=9.5e-07 Score=49.55 Aligned_cols=40 Identities=40% Similarity=0.522 Sum_probs=33.7
Q ss_pred CCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccCC
Q 038455 127 KQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRT 168 (170)
Q Consensus 127 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP 168 (170)
++|++|++++|+|+ .+|+.+++|++|+.|++++|+|+ .+|
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~-~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS-DIS 40 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS-BEG
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC-CCc
Confidence 47999999999999 67888999999999999999998 554
No 18
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.23 E-value=2.2e-07 Score=78.72 Aligned_cols=68 Identities=26% Similarity=0.340 Sum_probs=31.2
Q ss_pred CCCCCCCCEEeccCCccC-ccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccCC
Q 038455 95 FHPFEELQSLDLSENWFT-GIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRT 168 (170)
Q Consensus 95 ~~~l~~L~~L~ls~N~l~-~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP 168 (170)
+..|+.|+.+++..|++. .-+|. .+..+..|..||||+|++. ..|..+..-+++-+|+|++|+|. +||
T Consensus 74 Ls~Lp~LRsv~~R~N~LKnsGiP~----diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIP 142 (1255)
T KOG0444|consen 74 LSDLPRLRSVIVRDNNLKNSGIPT----DIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIP 142 (1255)
T ss_pred hccchhhHHHhhhccccccCCCCc----hhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCC
Confidence 344444444444444441 11333 4444444555555555544 44444444444444444444444 444
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.18 E-value=1.6e-06 Score=75.92 Aligned_cols=60 Identities=28% Similarity=0.197 Sum_probs=43.3
Q ss_pred CCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccCC
Q 038455 100 ELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRT 168 (170)
Q Consensus 100 ~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP 168 (170)
+|+.|++++|.++. +|. . +.+|+.|++++|+|+ .+|..+..+++|+.|+|++|+|+|.+|
T Consensus 403 ~L~~LdLS~N~Lss-IP~----l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~ 462 (788)
T PRK15387 403 ELKELMVSGNRLTS-LPM----L---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL 462 (788)
T ss_pred CCCEEEccCCcCCC-CCc----c---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHH
Confidence 44555555555544 332 2 235677788888887 688889999999999999999998765
No 20
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.18 E-value=2.8e-07 Score=78.13 Aligned_cols=82 Identities=27% Similarity=0.285 Sum_probs=45.8
Q ss_pred CeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhh
Q 038455 67 RVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPY 146 (170)
Q Consensus 67 ~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~ 146 (170)
.++.|||++++ |+.. |..+..-.++-+|+||+|+|..+..+ -|.+++.|-.||||+|++. .+|+.
T Consensus 104 dLt~lDLShNq-L~Ev---------P~~LE~AKn~iVLNLS~N~IetIPn~----lfinLtDLLfLDLS~NrLe-~LPPQ 168 (1255)
T KOG0444|consen 104 DLTILDLSHNQ-LREV---------PTNLEYAKNSIVLNLSYNNIETIPNS----LFINLTDLLFLDLSNNRLE-MLPPQ 168 (1255)
T ss_pred cceeeecchhh-hhhc---------chhhhhhcCcEEEEcccCccccCCch----HHHhhHhHhhhccccchhh-hcCHH
Confidence 45667777776 4433 33344445555566666665543222 4555556666666666665 45555
Q ss_pred ccCCCCCCEEeCCCCcC
Q 038455 147 LNTLTSLTTLNLSYNKI 163 (170)
Q Consensus 147 ~~~l~~L~~L~L~~N~l 163 (170)
+..+..|++|.|++|++
T Consensus 169 ~RRL~~LqtL~Ls~NPL 185 (1255)
T KOG0444|consen 169 IRRLSMLQTLKLSNNPL 185 (1255)
T ss_pred HHHHhhhhhhhcCCChh
Confidence 55666666666666654
No 21
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.17 E-value=1.8e-07 Score=81.60 Aligned_cols=90 Identities=29% Similarity=0.373 Sum_probs=64.8
Q ss_pred CCceEecCCCCCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECC
Q 038455 56 WEGVMCNATTRRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLG 135 (170)
Q Consensus 56 w~gv~c~~~~~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls 135 (170)
|.-..| -.++.-|+|+++. | ..++...+.++..|+.|+||+|+++. +|. .+.+++.|++|...
T Consensus 376 ~p~l~~---~~hLKVLhLsyNr-L--------~~fpas~~~kle~LeeL~LSGNkL~~-Lp~----tva~~~~L~tL~ah 438 (1081)
T KOG0618|consen 376 FPVLVN---FKHLKVLHLSYNR-L--------NSFPASKLRKLEELEELNLSGNKLTT-LPD----TVANLGRLHTLRAH 438 (1081)
T ss_pred hhhhcc---ccceeeeeecccc-c--------ccCCHHHHhchHHhHHHhcccchhhh-hhH----HHHhhhhhHHHhhc
Confidence 444444 3467888888887 3 34456678888889999999999887 566 67777777777777
Q ss_pred CCCCCCCChhhccCCCCCCEEeCCCCcCc
Q 038455 136 FNYVNDSILPYLNTLTSLTTLNLSYNKIE 164 (170)
Q Consensus 136 ~N~l~g~~p~~~~~l~~L~~L~L~~N~l~ 164 (170)
+|++. ..| .+..+++|+++|++.|+++
T Consensus 439 sN~l~-~fP-e~~~l~qL~~lDlS~N~L~ 465 (1081)
T KOG0618|consen 439 SNQLL-SFP-ELAQLPQLKVLDLSCNNLS 465 (1081)
T ss_pred CCcee-ech-hhhhcCcceEEecccchhh
Confidence 77776 566 6677777777777777765
No 22
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.11 E-value=4e-05 Score=67.35 Aligned_cols=35 Identities=9% Similarity=0.066 Sum_probs=26.1
Q ss_pred cCCcHHHHHHHHHHHhhccCCCCCCCCCCCCCC----CCCCCCCCCCCCCC
Q 038455 8 KACLETERTALLAIKSFFISVSDVGYDDKILPS----WVGEDDGMPSDCCD 54 (170)
Q Consensus 8 ~~~~~~~~~aL~~~~~~~~~~~~~~~~~~~l~~----W~~~~~~~~~~~c~ 54 (170)
....+.|...++++...+..|. ...+ |.+ .+++|.
T Consensus 58 ~~~~~~~~~~~~~~~~~l~~p~-------~~~~~~~~~~~-----~~~fc~ 96 (754)
T PRK15370 58 ETASPEEIKSKFECLRMLAFPA-------YADNIQYSRGG-----ADQYCI 96 (754)
T ss_pred CCCCHHHHHHHHHHHHHhcCCc-------hhhccccccCC-----CCcccc
Confidence 3456788999999999987775 4444 887 578885
No 23
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.07 E-value=4e-07 Score=73.38 Aligned_cols=68 Identities=25% Similarity=0.303 Sum_probs=53.5
Q ss_pred CCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCc
Q 038455 90 MNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIE 164 (170)
Q Consensus 90 ~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~ 164 (170)
++......+.+|..||+..|+++. .|. ++..+++|++||+|+|.|+ .+|..++++ .|+.|.+.+|++.
T Consensus 243 lpae~~~~L~~l~vLDLRdNklke-~Pd----e~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlr 310 (565)
T KOG0472|consen 243 LPAEHLKHLNSLLVLDLRDNKLKE-VPD----EICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLR 310 (565)
T ss_pred hHHHHhcccccceeeecccccccc-Cch----HHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchH
Confidence 334445577888888888888876 576 7888888888888888888 577888888 8888888888865
No 24
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.00 E-value=2e-05 Score=72.33 Aligned_cols=61 Identities=18% Similarity=0.161 Sum_probs=29.2
Q ss_pred CCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCC
Q 038455 96 HPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYN 161 (170)
Q Consensus 96 ~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N 161 (170)
..+++|+.|+|+++.....+| .+..+++|+.|+|++|.....+|..++.+++|+.|++++|
T Consensus 631 ~~l~~Lk~L~Ls~~~~l~~ip-----~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c 691 (1153)
T PLN03210 631 HSLTGLRNIDLRGSKNLKEIP-----DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRC 691 (1153)
T ss_pred ccCCCCCEEECCCCCCcCcCC-----ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCC
Confidence 445555555555443323333 3444555555555554433345555555555555555544
No 25
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.98 E-value=2e-06 Score=69.17 Aligned_cols=68 Identities=29% Similarity=0.337 Sum_probs=49.2
Q ss_pred CcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCc
Q 038455 93 SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIE 164 (170)
Q Consensus 93 ~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~ 164 (170)
.-|..|++|++|+|++|+++.+-+. .|..+.+++.|.|..|+|...--..|.++..|++|+|.+|+|+
T Consensus 268 ~cf~~L~~L~~lnlsnN~i~~i~~~----aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it 335 (498)
T KOG4237|consen 268 KCFKKLPNLRKLNLSNNKITRIEDG----AFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQIT 335 (498)
T ss_pred HHHhhcccceEeccCCCccchhhhh----hhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeE
Confidence 3477888888888888888876665 6777777777777777776444456677777777777777776
No 26
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.96 E-value=2.3e-05 Score=71.96 Aligned_cols=70 Identities=23% Similarity=0.074 Sum_probs=48.5
Q ss_pred cCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccCC
Q 038455 94 LFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRT 168 (170)
Q Consensus 94 ~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP 168 (170)
.+..+++|+.|+|++|.....+|. .+..+++|+.|++++|.....+|..+ ++++|+.|++++|...+.+|
T Consensus 652 ~ls~l~~Le~L~L~~c~~L~~lp~----si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p 721 (1153)
T PLN03210 652 DLSMATNLETLKLSDCSSLVELPS----SIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFP 721 (1153)
T ss_pred ccccCCcccEEEecCCCCccccch----hhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccc
Confidence 466778888888888765556777 78888888888888765544666654 56677777776665443443
No 27
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.87 E-value=3.2e-06 Score=74.03 Aligned_cols=85 Identities=24% Similarity=0.374 Sum_probs=69.9
Q ss_pred eEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhc
Q 038455 68 VMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYL 147 (170)
Q Consensus 68 v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~ 147 (170)
+..|+++++. +..+ |..+..+.+|+.|+++.|.+.. .|. ...++.+|++|.|.+|++. ..|..+
T Consensus 47 L~~l~lsnn~-~~~f---------p~~it~l~~L~~ln~s~n~i~~-vp~----s~~~~~~l~~lnL~~n~l~-~lP~~~ 110 (1081)
T KOG0618|consen 47 LKSLDLSNNQ-ISSF---------PIQITLLSHLRQLNLSRNYIRS-VPS----SCSNMRNLQYLNLKNNRLQ-SLPASI 110 (1081)
T ss_pred eEEeeccccc-cccC---------CchhhhHHHHhhcccchhhHhh-Cch----hhhhhhcchhheeccchhh-cCchhH
Confidence 7788888887 2222 3456678889999999999877 566 8889999999999999988 789999
Q ss_pred cCCCCCCEEeCCCCcCcccCCC
Q 038455 148 NTLTSLTTLNLSYNKIEGSRTK 169 (170)
Q Consensus 148 ~~l~~L~~L~L~~N~l~g~iP~ 169 (170)
..+++|+.|+++.|+|. .+|.
T Consensus 111 ~~lknl~~LdlS~N~f~-~~Pl 131 (1081)
T KOG0618|consen 111 SELKNLQYLDLSFNHFG-PIPL 131 (1081)
T ss_pred HhhhcccccccchhccC-CCch
Confidence 99999999999999997 6764
No 28
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.84 E-value=1.6e-06 Score=60.48 Aligned_cols=88 Identities=20% Similarity=0.265 Sum_probs=63.8
Q ss_pred CCCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCCh
Q 038455 65 TRRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSIL 144 (170)
Q Consensus 65 ~~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p 144 (170)
..+++.++|+++. ++.+ ++..-..++.++.|++++|.++. +|. ++..++.|+.|+++.|.+. ..|
T Consensus 52 ~~el~~i~ls~N~-fk~f--------p~kft~kf~t~t~lNl~~neisd-vPe----E~Aam~aLr~lNl~~N~l~-~~p 116 (177)
T KOG4579|consen 52 GYELTKISLSDNG-FKKF--------PKKFTIKFPTATTLNLANNEISD-VPE----ELAAMPALRSLNLRFNPLN-AEP 116 (177)
T ss_pred CceEEEEecccch-hhhC--------CHHHhhccchhhhhhcchhhhhh-chH----HHhhhHHhhhcccccCccc-cch
Confidence 3467777777777 4333 33333455678888888888877 677 7888888888888888888 567
Q ss_pred hhccCCCCCCEEeCCCCcCcccCC
Q 038455 145 PYLNTLTSLTTLNLSYNKIEGSRT 168 (170)
Q Consensus 145 ~~~~~l~~L~~L~L~~N~l~g~iP 168 (170)
..+..+.+|..|+..+|.+. +||
T Consensus 117 ~vi~~L~~l~~Lds~~na~~-eid 139 (177)
T KOG4579|consen 117 RVIAPLIKLDMLDSPENARA-EID 139 (177)
T ss_pred HHHHHHHhHHHhcCCCCccc-cCc
Confidence 76767888888888887765 554
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.79 E-value=1.4e-05 Score=64.90 Aligned_cols=68 Identities=32% Similarity=0.462 Sum_probs=52.6
Q ss_pred CCCCC-CCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccCCC
Q 038455 95 FHPFE-ELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRTK 169 (170)
Q Consensus 95 ~~~l~-~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP~ 169 (170)
...+. +|+.|++++|.+.. +|. .+..++.|+.|++++|++. .+|...+.++.|+.|++++|+++ .+|.
T Consensus 135 ~~~~~~nL~~L~l~~N~i~~-l~~----~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~ 203 (394)
T COG4886 135 IGLLKSNLKELDLSDNKIES-LPS----PLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPP 203 (394)
T ss_pred cccchhhcccccccccchhh-hhh----hhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCch
Confidence 33443 78888888888876 444 6778888888888888888 66766667888888888888887 6664
No 30
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.77 E-value=5.7e-05 Score=66.37 Aligned_cols=58 Identities=24% Similarity=0.279 Sum_probs=33.8
Q ss_pred CCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccCC
Q 038455 100 ELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRT 168 (170)
Q Consensus 100 ~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP 168 (170)
.|+.|+|++|.+.. +|. .+. ++|+.|++++|++. .+|..+. ++|+.|++++|+|+ .+|
T Consensus 242 ~L~~L~Ls~N~L~~-LP~----~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP 299 (754)
T PRK15370 242 TIQEMELSINRITE-LPE----RLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLP 299 (754)
T ss_pred cccEEECcCCccCc-CCh----hHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCc
Confidence 34455555555442 333 332 35777777777776 4565443 46777788777777 455
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.77 E-value=6.1e-06 Score=64.62 Aligned_cols=38 Identities=29% Similarity=0.386 Sum_probs=19.8
Q ss_pred CCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCC
Q 038455 97 PFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVN 140 (170)
Q Consensus 97 ~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~ 140 (170)
-++.++.|++++|.+... . .+..+++|+.||||+|.++
T Consensus 305 L~Pkir~L~lS~N~i~~v--~----nLa~L~~L~~LDLS~N~Ls 342 (490)
T KOG1259|consen 305 LAPKLRRLILSQNRIRTV--Q----NLAELPQLQLLDLSGNLLA 342 (490)
T ss_pred hccceeEEeccccceeee--h----hhhhcccceEeecccchhH
Confidence 344555555555555432 1 3445555555555555554
No 32
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.72 E-value=2.4e-05 Score=59.61 Aligned_cols=94 Identities=26% Similarity=0.338 Sum_probs=62.0
Q ss_pred CCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCC--ccCccccCccccccCCCCCCCEEECCCCCCCC-C
Q 038455 66 RRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSEN--WFTGIYENRAYDSFGSLKQLKMLNLGFNYVND-S 142 (170)
Q Consensus 66 ~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N--~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g-~ 142 (170)
+.+..+...+.. |+.+.+...+......|..|++|++|.++.| ++.+.++. -...+++|++|+++.|+|.- .
T Consensus 33 g~~~gl~d~~~~-le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~v----l~e~~P~l~~l~ls~Nki~~ls 107 (260)
T KOG2739|consen 33 GKLGGLTDEFVE-LELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEV----LAEKAPNLKVLNLSGNKIKDLS 107 (260)
T ss_pred CCcccccccccc-hhhhhhhccceeecccCCCcchhhhhcccCCccccccccee----hhhhCCceeEEeecCCcccccc
Confidence 344444444444 4444333333333456778899999999999 66666655 55667999999999999872 1
Q ss_pred ChhhccCCCCCCEEeCCCCcCc
Q 038455 143 ILPYLNTLTSLTTLNLSYNKIE 164 (170)
Q Consensus 143 ~p~~~~~l~~L~~L~L~~N~l~ 164 (170)
.-..+..+.+|..|++.++..+
T Consensus 108 tl~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 108 TLRPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred ccchhhhhcchhhhhcccCCcc
Confidence 1123566777888888887655
No 33
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.72 E-value=1.8e-05 Score=62.00 Aligned_cols=65 Identities=26% Similarity=0.353 Sum_probs=31.7
Q ss_pred CCCCCCCEEeccCCccCcc----ccCccccccCCCCCCCEEECCCCCCCCC----ChhhccCCCCCCEEeCCCCcCc
Q 038455 96 HPFEELQSLDLSENWFTGI----YENRAYDSFGSLKQLKMLNLGFNYVNDS----ILPYLNTLTSLTTLNLSYNKIE 164 (170)
Q Consensus 96 ~~l~~L~~L~ls~N~l~~~----~p~~~~~~~~~l~~L~~L~Ls~N~l~g~----~p~~~~~l~~L~~L~L~~N~l~ 164 (170)
..+++|++|++++|.+.+. ++. .+..+++|+.|++++|.+.+. ++..+..+++|++|++++|.++
T Consensus 162 ~~~~~L~~L~l~~n~l~~~~~~~l~~----~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 162 RANRDLKELNLANNGIGDAGIRALAE----GLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred HhCCCcCEEECcCCCCchHHHHHHHH----HHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence 3444555566655555421 111 233344566666665555432 2223444555666666655554
No 34
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.65 E-value=3.3e-06 Score=70.66 Aligned_cols=69 Identities=20% Similarity=0.274 Sum_probs=55.9
Q ss_pred CCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccCC
Q 038455 92 MSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRT 168 (170)
Q Consensus 92 ~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP 168 (170)
++.++.+..|+.|.+..|++.. +|+ ++..|+ |..||+|.|+++ .+|-.|.+|+.|++|-|.+|.+. +-|
T Consensus 182 psql~~l~slr~l~vrRn~l~~-lp~----El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPP 250 (722)
T KOG0532|consen 182 PSQLGYLTSLRDLNVRRNHLED-LPE----ELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPP 250 (722)
T ss_pred hHHhhhHHHHHHHHHhhhhhhh-CCH----HHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CCh
Confidence 3456677788888888888876 455 666554 889999999999 89999999999999999999998 434
No 35
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.59 E-value=7.8e-06 Score=57.12 Aligned_cols=65 Identities=25% Similarity=0.303 Sum_probs=54.8
Q ss_pred CCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCc
Q 038455 95 FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIE 164 (170)
Q Consensus 95 ~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~ 164 (170)
+....+|+.++|++|.+....+. .-..++.++.|++++|.|+ .+|+.+..++.|+.|+++.|.|.
T Consensus 49 l~~~~el~~i~ls~N~fk~fp~k----ft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~ 113 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNGFKKFPKK----FTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN 113 (177)
T ss_pred HhCCceEEEEecccchhhhCCHH----Hhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc
Confidence 45566789999999999885443 3344568999999999999 79999999999999999999987
No 36
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.55 E-value=2.7e-05 Score=61.00 Aligned_cols=66 Identities=26% Similarity=0.304 Sum_probs=37.5
Q ss_pred CCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCC----ChhhccCCCCCCEEeCCCCcCc
Q 038455 99 EELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDS----ILPYLNTLTSLTTLNLSYNKIE 164 (170)
Q Consensus 99 ~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~----~p~~~~~l~~L~~L~L~~N~l~ 164 (170)
++|+.|++++|.+++.........+..+++|+.|++++|.+.+. ++..+..+++|+.|++++|.++
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 206 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLT 206 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccC
Confidence 56677777777666321110001345556677777777776632 2334455567777777777665
No 37
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.50 E-value=0.0002 Score=63.12 Aligned_cols=14 Identities=29% Similarity=0.444 Sum_probs=7.0
Q ss_pred CCCCEEeCCCCcCc
Q 038455 151 TSLTTLNLSYNKIE 164 (170)
Q Consensus 151 ~~L~~L~L~~N~l~ 164 (170)
++|+.|++++|+|+
T Consensus 302 ~~L~~LdLS~N~L~ 315 (788)
T PRK15387 302 PGLQELSVSDNQLA 315 (788)
T ss_pred cccceeECCCCccc
Confidence 34555555555554
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.46 E-value=3.9e-05 Score=60.23 Aligned_cols=60 Identities=33% Similarity=0.406 Sum_probs=51.4
Q ss_pred CCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCc
Q 038455 98 FEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIE 164 (170)
Q Consensus 98 l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~ 164 (170)
...|+.+||++|.|+. +.. ...-++.++.|++|+|.|.. + ..+..+.+|+.|||++|.++
T Consensus 283 Wq~LtelDLS~N~I~~-iDE----SvKL~Pkir~L~lS~N~i~~-v-~nLa~L~~L~~LDLS~N~Ls 342 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQ-IDE----SVKLAPKLRRLILSQNRIRT-V-QNLAELPQLQLLDLSGNLLA 342 (490)
T ss_pred Hhhhhhccccccchhh-hhh----hhhhccceeEEeccccceee-e-hhhhhcccceEeecccchhH
Confidence 3579999999999987 445 78888999999999999983 3 34888999999999999876
No 39
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.45 E-value=0.00018 Score=53.29 Aligned_cols=82 Identities=24% Similarity=0.216 Sum_probs=61.4
Q ss_pred CeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCCh--
Q 038455 67 RVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSIL-- 144 (170)
Q Consensus 67 ~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p-- 144 (170)
....+||+.+. +.. ...|..++.|.+|.+.+|+|+.+-|. --..+++|+.|.|.+|.|.. +-
T Consensus 43 ~~d~iDLtdNd-l~~----------l~~lp~l~rL~tLll~nNrIt~I~p~----L~~~~p~l~~L~LtnNsi~~-l~dl 106 (233)
T KOG1644|consen 43 QFDAIDLTDND-LRK----------LDNLPHLPRLHTLLLNNNRITRIDPD----LDTFLPNLKTLILTNNSIQE-LGDL 106 (233)
T ss_pred ccceecccccc-hhh----------cccCCCccccceEEecCCcceeeccc----hhhhccccceEEecCcchhh-hhhc
Confidence 34556666666 332 35678889999999999999987775 44456889999999999862 22
Q ss_pred hhccCCCCCCEEeCCCCcCc
Q 038455 145 PYLNTLTSLTTLNLSYNKIE 164 (170)
Q Consensus 145 ~~~~~l~~L~~L~L~~N~l~ 164 (170)
+.+..++.|++|.+-+|+.+
T Consensus 107 ~pLa~~p~L~~Ltll~Npv~ 126 (233)
T KOG1644|consen 107 DPLASCPKLEYLTLLGNPVE 126 (233)
T ss_pred chhccCCccceeeecCCchh
Confidence 34677889999999998875
No 40
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.45 E-value=3.7e-05 Score=68.61 Aligned_cols=73 Identities=27% Similarity=0.278 Sum_probs=62.5
Q ss_pred CCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccC
Q 038455 90 MNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSR 167 (170)
Q Consensus 90 ~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~i 167 (170)
+....|..++.|++|||++|.=-+.+|. .++.|-+|++|+++...+. .+|..+++|+.|.+|+++.+.....+
T Consensus 562 is~~ff~~m~~LrVLDLs~~~~l~~LP~----~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~ 634 (889)
T KOG4658|consen 562 ISGEFFRSLPLLRVLDLSGNSSLSKLPS----SIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESI 634 (889)
T ss_pred cCHHHHhhCcceEEEECCCCCccCcCCh----HHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccc
Confidence 3345588999999999999876677898 9999999999999999999 89999999999999999887654333
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.26 E-value=0.00016 Score=59.37 Aligned_cols=62 Identities=44% Similarity=0.532 Sum_probs=46.0
Q ss_pred CCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCc
Q 038455 95 FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIE 164 (170)
Q Consensus 95 ~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~ 164 (170)
+..+++|++|++++|.|+... .+..++.|+.|++++|.|+. + ..+..++.|+.+++++|.++
T Consensus 114 l~~~~~L~~L~ls~N~I~~i~------~l~~l~~L~~L~l~~N~i~~-~-~~~~~l~~L~~l~l~~n~i~ 175 (414)
T KOG0531|consen 114 LSSLVNLQVLDLSFNKITKLE------GLSTLTLLKELNLSGNLISD-I-SGLESLKSLKLLDLSYNRIV 175 (414)
T ss_pred hhhhhcchheecccccccccc------chhhccchhhheeccCcchh-c-cCCccchhhhcccCCcchhh
Confidence 567888888888888887743 46667778888888888873 2 34555778888888888876
No 42
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.24 E-value=1.8e-05 Score=66.42 Aligned_cols=47 Identities=34% Similarity=0.379 Sum_probs=22.3
Q ss_pred CCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCC
Q 038455 101 LQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSL 153 (170)
Q Consensus 101 L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L 153 (170)
|+.|-+++|+++. +|. +++.+..|..||.+.|.+. .+|..++.+.+|
T Consensus 145 Lkvli~sNNkl~~-lp~----~ig~~~tl~~ld~s~nei~-slpsql~~l~sl 191 (722)
T KOG0532|consen 145 LKVLIVSNNKLTS-LPE----EIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSL 191 (722)
T ss_pred ceeEEEecCcccc-CCc----ccccchhHHHhhhhhhhhh-hchHHhhhHHHH
Confidence 5555555555544 343 4444455555555555554 334333333333
No 43
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.17 E-value=0.00012 Score=59.53 Aligned_cols=64 Identities=30% Similarity=0.403 Sum_probs=53.6
Q ss_pred CcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCc
Q 038455 93 SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNK 162 (170)
Q Consensus 93 ~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~ 162 (170)
..+..++.|+.|++++|++.. +|. ....++.|+.|++++|++. .+|.....+..|+.|.+++|+
T Consensus 157 ~~~~~l~~L~~L~l~~N~l~~-l~~----~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~ 220 (394)
T COG4886 157 SPLRNLPNLKNLDLSFNDLSD-LPK----LLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNS 220 (394)
T ss_pred hhhhccccccccccCCchhhh-hhh----hhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCc
Confidence 357889999999999999987 454 5558899999999999999 778777677779999999985
No 44
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.17 E-value=0.00017 Score=64.49 Aligned_cols=65 Identities=32% Similarity=0.321 Sum_probs=56.2
Q ss_pred CCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCC
Q 038455 92 MSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYN 161 (170)
Q Consensus 92 ~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N 161 (170)
|..++.|-+|++|++++..+.. +|. .+++|+.|.+|++..+.....+|.....|++|++|.+-.-
T Consensus 588 P~~I~~Li~LryL~L~~t~I~~-LP~----~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 588 PSSIGELVHLRYLDLSDTGISH-LPS----GLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred ChHHhhhhhhhcccccCCCccc-cch----HHHHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence 5678889999999999999986 788 9999999999999998776567777778999999988554
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.01 E-value=6.5e-05 Score=64.94 Aligned_cols=65 Identities=32% Similarity=0.367 Sum_probs=31.7
Q ss_pred CcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCc
Q 038455 93 SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIE 164 (170)
Q Consensus 93 ~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~ 164 (170)
..+..|++|+.|||+.|.+.. +|.- ....++ |+.|.+.+|.++.. ..+.+|++|+.||+++|-++
T Consensus 203 ~~Lr~l~~LkhLDlsyN~L~~-vp~l---~~~gc~-L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~ 267 (1096)
T KOG1859|consen 203 DNLRRLPKLKHLDLSYNCLRH-VPQL---SMVGCK-LQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLS 267 (1096)
T ss_pred HHHHhcccccccccccchhcc-cccc---chhhhh-heeeeecccHHHhh--hhHHhhhhhhccchhHhhhh
Confidence 345666777777777777665 3320 112222 44444444444311 22444555555555555444
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=96.89 E-value=0.00056 Score=56.26 Aligned_cols=65 Identities=40% Similarity=0.484 Sum_probs=54.6
Q ss_pred CcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCc
Q 038455 93 SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIE 164 (170)
Q Consensus 93 ~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~ 164 (170)
..+..+++|+.|++..|.|... .. .+..+++|++|++++|.|+... .+..++.|+.|++++|.++
T Consensus 89 ~~l~~~~~l~~l~l~~n~i~~i-~~----~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~ 153 (414)
T KOG0531|consen 89 NHLSKLKSLEALDLYDNKIEKI-EN----LLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLIS 153 (414)
T ss_pred cccccccceeeeeccccchhhc-cc----chhhhhcchheecccccccccc--chhhccchhhheeccCcch
Confidence 3477889999999999999884 32 3788999999999999998543 4667778999999999987
No 47
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.52 E-value=0.00069 Score=31.92 Aligned_cols=16 Identities=44% Similarity=0.428 Sum_probs=8.6
Q ss_pred CCEEeccCCccCccccC
Q 038455 101 LQSLDLSENWFTGIYEN 117 (170)
Q Consensus 101 L~~L~ls~N~l~~~~p~ 117 (170)
|++|++++|+++ .+|.
T Consensus 2 L~~Ldls~n~l~-~ip~ 17 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPS 17 (22)
T ss_dssp ESEEEETSSEES-EEGT
T ss_pred ccEEECCCCcCE-eCCh
Confidence 555555555555 3444
No 48
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.41 E-value=0.0039 Score=46.38 Aligned_cols=60 Identities=25% Similarity=0.312 Sum_probs=49.4
Q ss_pred CCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCc
Q 038455 99 EELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIE 164 (170)
Q Consensus 99 ~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~ 164 (170)
.+...+||++|.+.. ++ .|..++.|.+|.+++|+|+..-|.--.-+++|..|.|.+|.|.
T Consensus 42 d~~d~iDLtdNdl~~-l~-----~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~ 101 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRK-LD-----NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ 101 (233)
T ss_pred cccceecccccchhh-cc-----cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh
Confidence 357789999999876 33 6888999999999999999655554455678999999999876
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.41 E-value=0.00051 Score=59.65 Aligned_cols=61 Identities=31% Similarity=0.472 Sum_probs=46.3
Q ss_pred CCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhh-ccCCCCCCEEeCCCCcCc
Q 038455 96 HPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPY-LNTLTSLTTLNLSYNKIE 164 (170)
Q Consensus 96 ~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~-~~~l~~L~~L~L~~N~l~ 164 (170)
.-++.|+.|+|++|+++.. + .+..+++|++|||++|.+. .+|.. ...++ |..|.+.+|.++
T Consensus 184 qll~ale~LnLshNk~~~v--~----~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~ 245 (1096)
T KOG1859|consen 184 QLLPALESLNLSHNKFTKV--D----NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALT 245 (1096)
T ss_pred HHHHHhhhhccchhhhhhh--H----HHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHH
Confidence 3457788999999998764 2 6778899999999999988 56643 23343 888999988775
No 50
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.32 E-value=0.0027 Score=29.86 Aligned_cols=22 Identities=32% Similarity=0.389 Sum_probs=17.9
Q ss_pred CCCEEECCCCCCCCCChhhccCC
Q 038455 128 QLKMLNLGFNYVNDSILPYLNTL 150 (170)
Q Consensus 128 ~L~~L~Ls~N~l~g~~p~~~~~l 150 (170)
+|++|+|++|+|+ .+|+.|++|
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT-
T ss_pred CccEEECCCCcCE-eCChhhcCC
Confidence 4789999999999 788877654
No 51
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.16 E-value=0.0037 Score=47.91 Aligned_cols=63 Identities=33% Similarity=0.373 Sum_probs=49.3
Q ss_pred CCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCC--CCCCCChhhccCCCCCCEEeCCCCcCc
Q 038455 96 HPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFN--YVNDSILPYLNTLTSLTTLNLSYNKIE 164 (170)
Q Consensus 96 ~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N--~l~g~~p~~~~~l~~L~~L~L~~N~l~ 164 (170)
..+..|+.|.+.+..++.. - .+..|++|+.|.++.| ++.+.++.-...+++|++|++++|++.
T Consensus 40 d~~~~le~ls~~n~gltt~-~-----~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTL-T-----NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred ccccchhhhhhhccceeec-c-----cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 3455677777777666542 2 6788999999999999 667667666677799999999999986
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.08 E-value=0.0011 Score=52.08 Aligned_cols=86 Identities=22% Similarity=0.230 Sum_probs=56.6
Q ss_pred CeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCCh-h
Q 038455 67 RVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSIL-P 145 (170)
Q Consensus 67 ~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p-~ 145 (170)
+|.++||.++. +..- +++ ...+..|+.|+.|+++.|.+...|.. .-..+.+|+.|-|.+..+....- .
T Consensus 72 ~v~elDL~~N~-iSdW--seI----~~ile~lP~l~~LNls~N~L~s~I~~----lp~p~~nl~~lVLNgT~L~w~~~~s 140 (418)
T KOG2982|consen 72 DVKELDLTGNL-ISDW--SEI----GAILEQLPALTTLNLSCNSLSSDIKS----LPLPLKNLRVLVLNGTGLSWTQSTS 140 (418)
T ss_pred hhhhhhcccch-hccH--HHH----HHHHhcCccceEeeccCCcCCCcccc----CcccccceEEEEEcCCCCChhhhhh
Confidence 56777777776 2211 111 23466788899999999988766543 22356788888888877765433 3
Q ss_pred hccCCCCCCEEeCCCCcC
Q 038455 146 YLNTLTSLTTLNLSYNKI 163 (170)
Q Consensus 146 ~~~~l~~L~~L~L~~N~l 163 (170)
.+..++.++.|.++.|.+
T Consensus 141 ~l~~lP~vtelHmS~N~~ 158 (418)
T KOG2982|consen 141 SLDDLPKVTELHMSDNSL 158 (418)
T ss_pred hhhcchhhhhhhhccchh
Confidence 456777778888877743
No 53
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.02 E-value=0.0003 Score=54.71 Aligned_cols=61 Identities=23% Similarity=0.243 Sum_probs=37.1
Q ss_pred cCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhh-----ccCCCCCCEEe
Q 038455 94 LFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPY-----LNTLTSLTTLN 157 (170)
Q Consensus 94 ~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~-----~~~l~~L~~L~ 157 (170)
.|..+++|++|+|..|.|...-. ++.+.++++|+.|+|..|...|.-+.. +.-|++|+.||
T Consensus 58 pl~rCtrLkElYLRkN~I~sldE---L~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 58 PLQRCTRLKELYLRKNCIESLDE---LEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hHHHHHHHHHHHHHhcccccHHH---HHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 35667777777777777655321 124566777777777777776655532 34456666554
No 54
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.83 E-value=0.0042 Score=27.32 Aligned_cols=13 Identities=46% Similarity=0.703 Sum_probs=5.4
Q ss_pred CCCEEeCCCCcCc
Q 038455 152 SLTTLNLSYNKIE 164 (170)
Q Consensus 152 ~L~~L~L~~N~l~ 164 (170)
+|+.|+|++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4555555555554
No 55
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=95.81 E-value=0.0046 Score=54.22 Aligned_cols=70 Identities=24% Similarity=0.293 Sum_probs=36.1
Q ss_pred CCCCCCCCEEeccCCccCccc--c-----------------CccccccCCCCCCCEEECCCCCCCCCC--hh----hccC
Q 038455 95 FHPFEELQSLDLSENWFTGIY--E-----------------NRAYDSFGSLKQLKMLNLGFNYVNDSI--LP----YLNT 149 (170)
Q Consensus 95 ~~~l~~L~~L~ls~N~l~~~~--p-----------------~~~~~~~~~l~~L~~L~Ls~N~l~g~~--p~----~~~~ 149 (170)
..++++|+.||+|+.+++... . ...+..+.+|++|+.||+|..+..... .. .-..
T Consensus 169 c~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~ 248 (699)
T KOG3665|consen 169 CASFPNLRSLDISGTNISNLSGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMV 248 (699)
T ss_pred hhccCccceeecCCCCccCcHHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhccc
Confidence 456777888888877766320 0 001113455666666666665543211 11 1233
Q ss_pred CCCCCEEeCCCCcCc
Q 038455 150 LTSLTTLNLSYNKIE 164 (170)
Q Consensus 150 l~~L~~L~L~~N~l~ 164 (170)
|++|+.||.|++.+.
T Consensus 249 LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 249 LPELRFLDCSGTDIN 263 (699)
T ss_pred CccccEEecCCcchh
Confidence 566666666655544
No 56
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=95.66 E-value=0.0041 Score=51.04 Aligned_cols=66 Identities=30% Similarity=0.327 Sum_probs=43.7
Q ss_pred CCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCC-Chhh-----ccCCCCCCEEeCCCCcCc
Q 038455 96 HPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDS-ILPY-----LNTLTSLTTLNLSYNKIE 164 (170)
Q Consensus 96 ~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~-~p~~-----~~~l~~L~~L~L~~N~l~ 164 (170)
.-+..|+.|||++|++-.. +. +...+.++.|..|+++.+.+... .|+. ...+++|++|++..|++.
T Consensus 243 ~i~~~L~~LdLs~N~li~~-~~--~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 243 KILQTLQELDLSNNNLIDF-DQ--GYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR 314 (505)
T ss_pred hhhhHHhhccccCCccccc-cc--ccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence 3456788888888877542 21 12567778888888888777532 3332 345678888888888774
No 57
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=95.48 E-value=0.012 Score=28.67 Aligned_cols=18 Identities=33% Similarity=0.436 Sum_probs=10.0
Q ss_pred CCCCEEeCCCCcCcccCCC
Q 038455 151 TSLTTLNLSYNKIEGSRTK 169 (170)
Q Consensus 151 ~~L~~L~L~~N~l~g~iP~ 169 (170)
++|+.|+|++|+++ .||+
T Consensus 2 ~~L~~L~L~~N~l~-~lp~ 19 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPP 19 (26)
T ss_pred CCCCEEECCCCcCC-cCCH
Confidence 45556666666555 4543
No 58
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=95.48 E-value=0.012 Score=28.67 Aligned_cols=18 Identities=33% Similarity=0.436 Sum_probs=10.0
Q ss_pred CCCCEEeCCCCcCcccCCC
Q 038455 151 TSLTTLNLSYNKIEGSRTK 169 (170)
Q Consensus 151 ~~L~~L~L~~N~l~g~iP~ 169 (170)
++|+.|+|++|+++ .||+
T Consensus 2 ~~L~~L~L~~N~l~-~lp~ 19 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPP 19 (26)
T ss_pred CCCCEEECCCCcCC-cCCH
Confidence 45556666666555 4543
No 59
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.26 E-value=0.00033 Score=53.16 Aligned_cols=85 Identities=16% Similarity=0.027 Sum_probs=70.2
Q ss_pred CCCCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCC
Q 038455 64 TTRRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSI 143 (170)
Q Consensus 64 ~~~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~ 143 (170)
...+|+.||++.+. +..+ ...|..++.|..|+++.|.+.. .|. .++.+..+..+++..|.++ ..
T Consensus 40 ~~kr~tvld~~s~r-~vn~---------~~n~s~~t~~~rl~~sknq~~~-~~~----d~~q~~e~~~~~~~~n~~~-~~ 103 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNR-LVNL---------GKNFSILTRLVRLDLSKNQIKF-LPK----DAKQQRETVNAASHKNNHS-QQ 103 (326)
T ss_pred ccceeeeehhhhhH-HHhh---------ccchHHHHHHHHHhccHhhHhh-Chh----hHHHHHHHHHHHhhccchh-hC
Confidence 35688999998887 4333 2346778889999999999876 677 8888999999999999988 78
Q ss_pred hhhccCCCCCCEEeCCCCcCc
Q 038455 144 LPYLNTLTSLTTLNLSYNKIE 164 (170)
Q Consensus 144 p~~~~~l~~L~~L~L~~N~l~ 164 (170)
|.+++..+.++.+++-.|.|.
T Consensus 104 p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 104 PKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred CccccccCCcchhhhccCcch
Confidence 999999999999999988875
No 60
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=94.94 E-value=0.015 Score=47.84 Aligned_cols=72 Identities=25% Similarity=0.328 Sum_probs=49.3
Q ss_pred CcCCCCCCCCEEeccCCccCccc-cCc-cccccCCCCCCCEEECCCCCCCC-CChhhccCCCCCCEEeCCCCcCc
Q 038455 93 SLFHPFEELQSLDLSENWFTGIY-ENR-AYDSFGSLKQLKMLNLGFNYVND-SILPYLNTLTSLTTLNLSYNKIE 164 (170)
Q Consensus 93 ~~~~~l~~L~~L~ls~N~l~~~~-p~~-~~~~~~~l~~L~~L~Ls~N~l~g-~~p~~~~~l~~L~~L~L~~N~l~ 164 (170)
...+.|+.|+.|+++.+.+...- |+. -......+++|++|+++.|++.. ..-..+..+.+|+.|.+..|.|+
T Consensus 265 ~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 265 YKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred cccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 34677888999999998886542 220 00013567899999999999952 22234566778888888888776
No 61
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=94.81 E-value=0.012 Score=47.13 Aligned_cols=71 Identities=28% Similarity=0.263 Sum_probs=41.3
Q ss_pred cCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChh----hc-cCCCCCCEEeCCCCcCc
Q 038455 94 LFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILP----YL-NTLTSLTTLNLSYNKIE 164 (170)
Q Consensus 94 ~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~----~~-~~l~~L~~L~L~~N~l~ 164 (170)
.|..+++|++|||..|.|+..-...--..+..+++|+.|+++++.+...-.. .+ ...+.|++|.+.+|.++
T Consensus 208 al~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 208 ALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEIT 283 (382)
T ss_pred HHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence 4567778888888888776321100001455667777777777777533222 22 23566777777777665
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=94.31 E-value=0.028 Score=49.39 Aligned_cols=52 Identities=19% Similarity=0.199 Sum_probs=34.4
Q ss_pred CCCCCCCCEEeccCCccCccc--cCccccccCCCCCCCEEECCCCCCCCCChhh
Q 038455 95 FHPFEELQSLDLSENWFTGIY--ENRAYDSFGSLKQLKMLNLGFNYVNDSILPY 146 (170)
Q Consensus 95 ~~~l~~L~~L~ls~N~l~~~~--p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~ 146 (170)
+-.|++|+.||+|........ .....+.-..|+.|+.||.|...+.+.+-+.
T Consensus 216 LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ 269 (699)
T KOG3665|consen 216 LFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEE 269 (699)
T ss_pred HhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHH
Confidence 456899999999986554321 1101112345899999999998887655443
No 63
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=93.29 E-value=0.063 Score=42.01 Aligned_cols=71 Identities=25% Similarity=0.231 Sum_probs=44.9
Q ss_pred cCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCC----CChhhc---------cCCCCCCEEeCCC
Q 038455 94 LFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVND----SILPYL---------NTLTSLTTLNLSY 160 (170)
Q Consensus 94 ~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g----~~p~~~---------~~l~~L~~L~L~~ 160 (170)
.+-++++|+..+||.|-|....|+.-...++.-+.|.+|.+++|.+.- .+...+ ..-+.|+++....
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 355678888888888888766554111135566778888888887642 222111 2346677777777
Q ss_pred CcCc
Q 038455 161 NKIE 164 (170)
Q Consensus 161 N~l~ 164 (170)
|++.
T Consensus 167 NRle 170 (388)
T COG5238 167 NRLE 170 (388)
T ss_pred chhc
Confidence 7764
No 64
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.24 E-value=0.11 Score=25.11 Aligned_cols=14 Identities=29% Similarity=0.408 Sum_probs=8.7
Q ss_pred CCCCEEECCCCCCC
Q 038455 127 KQLKMLNLGFNYVN 140 (170)
Q Consensus 127 ~~L~~L~Ls~N~l~ 140 (170)
++|+.|+|++|+|.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45666666666666
No 65
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.24 E-value=0.11 Score=25.11 Aligned_cols=14 Identities=29% Similarity=0.408 Sum_probs=8.7
Q ss_pred CCCCEEECCCCCCC
Q 038455 127 KQLKMLNLGFNYVN 140 (170)
Q Consensus 127 ~~L~~L~Ls~N~l~ 140 (170)
++|+.|+|++|+|.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45666666666666
No 66
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.79 E-value=0.043 Score=43.45 Aligned_cols=66 Identities=24% Similarity=0.278 Sum_probs=47.7
Q ss_pred CCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCc
Q 038455 97 PFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIE 164 (170)
Q Consensus 97 ~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~ 164 (170)
..+.++.+||.+|.|+..-. -+..+.+++.|+.|+|+.|.++..|-..-..+.+|++|-|.+..+.
T Consensus 69 ~~~~v~elDL~~N~iSdWse--I~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~ 134 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSE--IGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLS 134 (418)
T ss_pred HhhhhhhhhcccchhccHHH--HHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCC
Confidence 45789999999999975321 1125778999999999999998543322245678899988776553
No 67
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.56 E-value=0.0017 Score=49.43 Aligned_cols=72 Identities=19% Similarity=0.230 Sum_probs=59.1
Q ss_pred CCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccCCC
Q 038455 91 NMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRTK 169 (170)
Q Consensus 91 ~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP~ 169 (170)
+.-.+..+...+.||++.|++... -. .|..++.|..|+++.|.+. ..|..++++..+..+++..|..+ ..|.
T Consensus 34 ~v~ei~~~kr~tvld~~s~r~vn~-~~----n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~ 105 (326)
T KOG0473|consen 34 PVREIASFKRVTVLDLSSNRLVNL-GK----NFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPK 105 (326)
T ss_pred chhhhhccceeeeehhhhhHHHhh-cc----chHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCc
Confidence 344566777889999999998753 33 6888999999999999998 78999999999999999988876 4553
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.07 E-value=0.0064 Score=47.50 Aligned_cols=69 Identities=30% Similarity=0.323 Sum_probs=57.0
Q ss_pred CcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCCh--hhccCCCCCCEEeCCCCcCcccCC
Q 038455 93 SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSIL--PYLNTLTSLTTLNLSYNKIEGSRT 168 (170)
Q Consensus 93 ~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p--~~~~~l~~L~~L~L~~N~l~g~iP 168 (170)
+....++.|++|.|+-|+|+..- .+..+++|+.|+|..|.|.. +- ..+.++++|++|-|..|...|+-+
T Consensus 35 sic~kMp~lEVLsLSvNkIssL~------pl~rCtrLkElYLRkN~I~s-ldEL~YLknlpsLr~LWL~ENPCc~~ag 105 (388)
T KOG2123|consen 35 SICEKMPLLEVLSLSVNKISSLA------PLQRCTRLKELYLRKNCIES-LDELEYLKNLPSLRTLWLDENPCCGEAG 105 (388)
T ss_pred HHHHhcccceeEEeeccccccch------hHHHHHHHHHHHHHhccccc-HHHHHHHhcCchhhhHhhccCCcccccc
Confidence 34567889999999999998743 47889999999999999973 33 367899999999999999887654
No 69
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=92.07 E-value=0.11 Score=25.47 Aligned_cols=16 Identities=44% Similarity=0.515 Sum_probs=8.7
Q ss_pred CCCEEeCCCCcCcccCC
Q 038455 152 SLTTLNLSYNKIEGSRT 168 (170)
Q Consensus 152 ~L~~L~L~~N~l~g~iP 168 (170)
+|+.|++++|+++ ++|
T Consensus 3 ~L~~L~vs~N~Lt-~LP 18 (26)
T smart00364 3 SLKELNVSNNQLT-SLP 18 (26)
T ss_pred ccceeecCCCccc-cCc
Confidence 4555555555555 444
No 70
>PRK15386 type III secretion protein GogB; Provisional
Probab=91.19 E-value=0.46 Score=39.33 Aligned_cols=10 Identities=20% Similarity=0.318 Sum_probs=5.8
Q ss_pred CCCEEeccCC
Q 038455 100 ELQSLDLSEN 109 (170)
Q Consensus 100 ~L~~L~ls~N 109 (170)
+|++|++++|
T Consensus 95 nLe~L~Ls~C 104 (426)
T PRK15386 95 GLEKLTVCHC 104 (426)
T ss_pred hhhheEccCc
Confidence 4556666555
No 71
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=90.99 E-value=0.41 Score=32.11 Aligned_cols=63 Identities=17% Similarity=0.293 Sum_probs=26.7
Q ss_pred CCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCC
Q 038455 91 NMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSY 160 (170)
Q Consensus 91 ~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~ 160 (170)
....|..+..|+.+.+.. .+...... .|..++.|+.+.+..+ +.......|.++ .|+.+.+..
T Consensus 50 ~~~~F~~~~~l~~i~~~~-~~~~i~~~----~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 50 GDNAFSNCKSLESITFPN-NLKSIGDN----AFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp -TTTTTT-TT-EEEEETS-TT-EE-TT----TTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred ceeeeecccccccccccc-cccccccc----cccccccccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 344556665666666654 33322222 4555666666666554 332222345555 666666553
No 72
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=89.19 E-value=0.72 Score=30.87 Aligned_cols=67 Identities=19% Similarity=0.289 Sum_probs=43.5
Q ss_pred CCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCC
Q 038455 89 FMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYN 161 (170)
Q Consensus 89 ~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N 161 (170)
.+....|..+++|+.+.+..+ +...... .|..++.|+.+.+.. .+.......|..+++|+.+.+..+
T Consensus 25 ~I~~~~F~~~~~l~~i~~~~~-~~~i~~~----~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~ 91 (129)
T PF13306_consen 25 KIGENAFSNCTSLKSINFPNN-LTSIGDN----AFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN 91 (129)
T ss_dssp EE-TTTTTT-TT-SEEEESST-TSCE-TT----TTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT
T ss_pred EeChhhccccccccccccccc-cccccee----eeecccccccccccc-cccccccccccccccccccccCcc
Confidence 345677889989999999875 6654344 788888899999976 443233456778999999998765
No 73
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=89.03 E-value=0.2 Score=40.33 Aligned_cols=67 Identities=19% Similarity=0.191 Sum_probs=38.6
Q ss_pred CCCCCCEEeccCCccCccccCccc-cccCCCCCCCEEECCCCCCCCC----ChhhccCCCCCCEEeCCCCcCc
Q 038455 97 PFEELQSLDLSENWFTGIYENRAY-DSFGSLKQLKMLNLGFNYVNDS----ILPYLNTLTSLTTLNLSYNKIE 164 (170)
Q Consensus 97 ~l~~L~~L~ls~N~l~~~~p~~~~-~~~~~l~~L~~L~Ls~N~l~g~----~p~~~~~l~~L~~L~L~~N~l~ 164 (170)
.-++|+++..+.|++... +.... ..|...+.|+.+.++.|.|... +-..|..+++|++|||..|.|+
T Consensus 155 ~~~~Lrv~i~~rNrlen~-ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft 226 (382)
T KOG1909|consen 155 SKPKLRVFICGRNRLENG-GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT 226 (382)
T ss_pred CCcceEEEEeeccccccc-cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh
Confidence 345677777777776432 11000 1345556677777777766321 2234666777777777777665
No 74
>PRK15386 type III secretion protein GogB; Provisional
Probab=88.88 E-value=0.6 Score=38.69 Aligned_cols=76 Identities=11% Similarity=0.124 Sum_probs=46.4
Q ss_pred CeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCC-ccCccccCccccccCCCCCCCEEECCCC-CCCCCCh
Q 038455 67 RVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSEN-WFTGIYENRAYDSFGSLKQLKMLNLGFN-YVNDSIL 144 (170)
Q Consensus 67 ~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N-~l~~~~p~~~~~~~~~l~~L~~L~Ls~N-~l~g~~p 144 (170)
....|+++++. |+.+ | .+ ..+|+.|.++++ .+ ..+|. .+ .++|+.|++++| .+. .+|
T Consensus 53 ~l~~L~Is~c~-L~sL---------P-~L--P~sLtsL~Lsnc~nL-tsLP~----~L--P~nLe~L~Ls~Cs~L~-sLP 111 (426)
T PRK15386 53 ASGRLYIKDCD-IESL---------P-VL--PNELTEITIENCNNL-TTLPG----SI--PEGLEKLTVCHCPEIS-GLP 111 (426)
T ss_pred CCCEEEeCCCC-Cccc---------C-CC--CCCCcEEEccCCCCc-ccCCc----hh--hhhhhheEccCccccc-ccc
Confidence 46677777775 4444 1 11 235999999874 44 33565 44 368999999988 554 566
Q ss_pred hhccCCCCCCEEeCCCCcCc--ccCCC
Q 038455 145 PYLNTLTSLTTLNLSYNKIE--GSRTK 169 (170)
Q Consensus 145 ~~~~~l~~L~~L~L~~N~l~--g~iP~ 169 (170)
. +|+.|+++.|... +.+|+
T Consensus 112 ~------sLe~L~L~~n~~~~L~~LPs 132 (426)
T PRK15386 112 E------SVRSLEIKGSATDSIKNVPN 132 (426)
T ss_pred c------ccceEEeCCCCCcccccCcc
Confidence 4 3556666655431 35554
No 75
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=88.17 E-value=0.28 Score=23.10 Aligned_cols=16 Identities=44% Similarity=0.515 Sum_probs=9.2
Q ss_pred CCCCCEEeCCCCcCcc
Q 038455 150 LTSLTTLNLSYNKIEG 165 (170)
Q Consensus 150 l~~L~~L~L~~N~l~g 165 (170)
+++|+.|+|++|+|+.
T Consensus 1 ~~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 1 NPNLETLDLSNNQITD 16 (24)
T ss_dssp -TT-SEEE-TSSBEHH
T ss_pred CCCCCEEEccCCcCCH
Confidence 3567777887777653
No 76
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=87.29 E-value=0.58 Score=22.85 Aligned_cols=15 Identities=33% Similarity=0.481 Sum_probs=9.9
Q ss_pred CCCCCEEECCCCCCC
Q 038455 126 LKQLKMLNLGFNYVN 140 (170)
Q Consensus 126 l~~L~~L~Ls~N~l~ 140 (170)
+++|+.|+++.|+|.
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 356677777777765
No 77
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=86.01 E-value=0.34 Score=38.53 Aligned_cols=59 Identities=27% Similarity=0.219 Sum_probs=42.9
Q ss_pred CCCCCCCEEeccCCcc-CccccCccccccCCCCCCCEEECCCCCCCCCChh---hccCCCCCCEEeCCC
Q 038455 96 HPFEELQSLDLSENWF-TGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILP---YLNTLTSLTTLNLSY 160 (170)
Q Consensus 96 ~~l~~L~~L~ls~N~l-~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~---~~~~l~~L~~L~L~~ 160 (170)
..+++|..|||+.|.. +...- .+|.+++.|++|.++.+.. .+|. .+...+.|.+|++.+
T Consensus 310 ~rcp~l~~LDLSD~v~l~~~~~----~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 310 RRCPNLVHLDLSDSVMLKNDCF----QEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFG 372 (419)
T ss_pred HhCCceeeeccccccccCchHH----HHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEecc
Confidence 4578999999998754 32222 2788899999999887763 4565 367788899998764
No 78
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=82.42 E-value=1.2 Score=21.94 Aligned_cols=14 Identities=50% Similarity=0.619 Sum_probs=9.4
Q ss_pred CCCCEEeCCCCcCc
Q 038455 151 TSLTTLNLSYNKIE 164 (170)
Q Consensus 151 ~~L~~L~L~~N~l~ 164 (170)
++|++|+|++|.|.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 45677777777764
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.72 E-value=0.2 Score=37.34 Aligned_cols=34 Identities=29% Similarity=0.273 Sum_probs=20.8
Q ss_pred CCCCCEEECCCC-CCCCCChhhccCCCCCCEEeCC
Q 038455 126 LKQLKMLNLGFN-YVNDSILPYLNTLTSLTTLNLS 159 (170)
Q Consensus 126 l~~L~~L~Ls~N-~l~g~~p~~~~~l~~L~~L~L~ 159 (170)
.++|+.|+|+.| +|+..--..+..+++|+.|.+.
T Consensus 150 ~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~ 184 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLY 184 (221)
T ss_pred ccchheeeccCCCeechhHHHHHHHhhhhHHHHhc
Confidence 366777777755 4554444456666666666654
No 80
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=78.17 E-value=2.1 Score=33.78 Aligned_cols=94 Identities=12% Similarity=0.164 Sum_probs=58.6
Q ss_pred CCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccC---ccccCc---cccccCCCCCCCEEECCCCCC
Q 038455 66 RRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFT---GIYENR---AYDSFGSLKQLKMLNLGFNYV 139 (170)
Q Consensus 66 ~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~---~~~p~~---~~~~~~~l~~L~~L~Ls~N~l 139 (170)
..+++++|+|+. +..-....+ ...+.+-.+|+..+++.-... ..++.. -...+-++++|+..+||.|.|
T Consensus 30 d~~~evdLSGNt-igtEA~e~l----~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 30 DELVEVDLSGNT-IGTEAMEEL----CNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred cceeEEeccCCc-ccHHHHHHH----HHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 468899999987 221100000 112334556777777653221 111110 001467899999999999999
Q ss_pred CCCChh----hccCCCCCCEEeCCCCcCc
Q 038455 140 NDSILP----YLNTLTSLTTLNLSYNKIE 164 (170)
Q Consensus 140 ~g~~p~----~~~~l~~L~~L~L~~N~l~ 164 (170)
.-..|+ .++.-+.|.+|.+++|.+-
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCCCC
Confidence 877775 4567889999999999763
No 81
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=69.62 E-value=2.2 Score=36.52 Aligned_cols=14 Identities=43% Similarity=0.487 Sum_probs=6.7
Q ss_pred CCCCEEeccCCccC
Q 038455 99 EELQSLDLSENWFT 112 (170)
Q Consensus 99 ~~L~~L~ls~N~l~ 112 (170)
+.+..+.|++|++.
T Consensus 218 p~i~sl~lsnNrL~ 231 (585)
T KOG3763|consen 218 PEILSLSLSNNRLY 231 (585)
T ss_pred cceeeeecccchhh
Confidence 34444455555443
No 82
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=62.89 E-value=0.65 Score=37.01 Aligned_cols=62 Identities=23% Similarity=0.263 Sum_probs=26.4
Q ss_pred CCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCC-CCCC-ChhhccCCCCCCEEeCCCCc
Q 038455 97 PFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNY-VNDS-ILPYLNTLTSLTTLNLSYNK 162 (170)
Q Consensus 97 ~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~-l~g~-~p~~~~~l~~L~~L~L~~N~ 162 (170)
.+.+|+.|.+.++++...+-. .+++-..|+.|+|+... |+.. .---+.+++.|..|+|+...
T Consensus 208 ~C~kLk~lSlEg~~LdD~I~~----~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~ 271 (419)
T KOG2120|consen 208 QCSKLKNLSLEGLRLDDPIVN----TIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCF 271 (419)
T ss_pred HHHhhhhccccccccCcHHHH----HHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhh
Confidence 344444444444444444433 44444455555554421 2211 01123445555555554443
No 83
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=53.51 E-value=6.7 Score=33.70 Aligned_cols=65 Identities=28% Similarity=0.250 Sum_probs=41.7
Q ss_pred CCCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCC--ccCccccCccccccCCC--CCCCEEECCCCCCC
Q 038455 65 TRRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSEN--WFTGIYENRAYDSFGSL--KQLKMLNLGFNYVN 140 (170)
Q Consensus 65 ~~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N--~l~~~~p~~~~~~~~~l--~~L~~L~Ls~N~l~ 140 (170)
.+.|.++.|+.|. |..+ ..++. .-...++|..|+|++| .+... . ++.++ ..|++|.+.+|.+.
T Consensus 217 ~p~i~sl~lsnNr-L~~L--d~~ss----lsq~apklk~L~LS~N~~~~~~~--~----el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 217 FPEILSLSLSNNR-LYHL--DALSS----LSQIAPKLKTLDLSHNHSKISSE--S----ELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred Ccceeeeecccch-hhch--hhhhH----HHHhcchhheeecccchhhhcch--h----hhhhhcCCCHHHeeecCCccc
Confidence 4578888888887 5433 11111 2234578999999999 44432 1 33333 45889999999986
Q ss_pred CC
Q 038455 141 DS 142 (170)
Q Consensus 141 g~ 142 (170)
..
T Consensus 284 ~t 285 (585)
T KOG3763|consen 284 TT 285 (585)
T ss_pred cc
Confidence 54
No 84
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=44.41 E-value=14 Score=37.71 Aligned_cols=28 Identities=25% Similarity=0.221 Sum_probs=22.9
Q ss_pred CCCCCCCcCCCCCCCCEEeccCCccCcc
Q 038455 87 ASFMNMSLFHPFEELQSLDLSENWFTGI 114 (170)
Q Consensus 87 ~~~~~~~~~~~l~~L~~L~ls~N~l~~~ 114 (170)
+..++...|..|++|+.|+|++|.+.-.
T Consensus 7 LstLp~g~F~~L~sL~~LdLsgNPw~CD 34 (2740)
T TIGR00864 7 ISTIEEGICANLCNLSEIDLSGNPFECD 34 (2740)
T ss_pred CCccChHHhccCCCceEEEeeCCccccc
Confidence 4556778899999999999999988643
No 85
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=39.88 E-value=21 Score=16.75 Aligned_cols=11 Identities=45% Similarity=0.558 Sum_probs=5.5
Q ss_pred CCCCEEeccCC
Q 038455 99 EELQSLDLSEN 109 (170)
Q Consensus 99 ~~L~~L~ls~N 109 (170)
++|+.|+|+++
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 34555555554
No 86
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=26.19 E-value=43 Score=27.42 Aligned_cols=37 Identities=27% Similarity=0.212 Sum_probs=18.1
Q ss_pred CCCCCEEECCCCC-CCCCCh-hhccCCCCCCEEeCCCCc
Q 038455 126 LKQLKMLNLGFNY-VNDSIL-PYLNTLTSLTTLNLSYNK 162 (170)
Q Consensus 126 l~~L~~L~Ls~N~-l~g~~p-~~~~~l~~L~~L~L~~N~ 162 (170)
+++|+.|.+..+. ++..-- .....++.|+.|+++.+.
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 4566666655444 332111 122345566666666543
No 87
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=23.47 E-value=7.2 Score=33.04 Aligned_cols=16 Identities=38% Similarity=0.524 Sum_probs=8.3
Q ss_pred CCCCCCEEeccCCccC
Q 038455 97 PFEELQSLDLSENWFT 112 (170)
Q Consensus 97 ~l~~L~~L~ls~N~l~ 112 (170)
...+++.|.++++.++
T Consensus 202 ~~~~le~L~L~~~~~t 217 (478)
T KOG4308|consen 202 PLSSLETLKLSRCGVT 217 (478)
T ss_pred ccccHHHHhhhhcCcC
Confidence 3445555555555544
No 88
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=22.63 E-value=56 Score=33.79 Aligned_cols=32 Identities=28% Similarity=0.276 Sum_probs=23.0
Q ss_pred eccCCccCccccCccccccCCCCCCCEEECCCCCCC
Q 038455 105 DLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVN 140 (170)
Q Consensus 105 ~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~ 140 (170)
||++|+|+.+.+. .|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g----~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEG----ICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChH----HhccCCCceEEEeeCCccc
Confidence 5677888775554 6777778888888887663
Done!