Query 038455
Match_columns 170
No_of_seqs 275 out of 2852
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 19:32:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038455.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038455hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 99.9 1.1E-22 3.8E-27 159.0 9.7 144 9-169 2-167 (313)
2 3rgz_A Protein brassinosteroid 99.8 5.1E-20 1.7E-24 159.1 9.3 145 6-168 5-168 (768)
3 4eco_A Uncharacterized protein 99.8 1.9E-19 6.4E-24 152.8 10.1 144 9-169 26-293 (636)
4 4ecn_A Leucine-rich repeat pro 99.7 2.3E-18 7.9E-23 150.6 9.2 74 92-169 441-535 (876)
5 4fcg_A Uncharacterized protein 99.7 2.9E-18 9.9E-23 134.8 3.1 138 8-169 22-168 (328)
6 3e6j_A Variable lymphocyte rec 99.6 1.2E-14 4.1E-19 108.6 11.3 109 49-164 15-148 (229)
7 3g39_A Variable lymphocyte rec 99.5 3.4E-14 1.2E-18 101.6 10.2 100 53-166 9-117 (170)
8 1w8a_A SLIT protein; signaling 99.5 2.2E-14 7.5E-19 104.4 9.0 102 53-168 8-119 (192)
9 2o6r_A Variable lymphocyte rec 99.5 6E-14 2.1E-18 100.5 10.8 98 53-164 7-113 (177)
10 2o6s_A Variable lymphocyte rec 99.5 1.4E-13 4.8E-18 100.9 10.8 107 53-165 7-138 (208)
11 3rgz_A Protein brassinosteroid 99.5 2.7E-14 9.4E-19 123.4 7.6 92 66-170 632-723 (768)
12 2wfh_A SLIT homolog 2 protein 99.5 1.3E-13 4.4E-18 100.6 9.7 100 53-168 10-118 (193)
13 2v9t_B SLIT homolog 2 protein 99.5 1.9E-13 6.4E-18 101.6 10.3 107 53-165 11-142 (220)
14 2v70_A SLIT-2, SLIT homolog 2 99.5 4.7E-13 1.6E-17 99.4 10.5 110 53-168 11-146 (220)
15 1w8a_A SLIT protein; signaling 99.4 2.8E-13 9.5E-18 98.5 8.6 90 66-168 54-143 (192)
16 2r9u_A Variable lymphocyte rec 99.4 1.1E-12 3.8E-17 94.1 10.6 86 67-165 34-119 (174)
17 2v70_A SLIT-2, SLIT homolog 2 99.4 7.5E-13 2.6E-17 98.3 9.6 76 88-167 94-169 (220)
18 3m19_A Variable lymphocyte rec 99.4 6.1E-13 2.1E-17 100.3 8.8 71 91-165 75-145 (251)
19 4g8a_A TOLL-like receptor 4; l 99.4 5.1E-13 1.8E-17 111.6 9.1 94 66-164 52-161 (635)
20 2o6q_A Variable lymphocyte rec 99.4 1.1E-12 3.7E-17 100.0 9.8 68 93-164 79-146 (270)
21 2v9t_B SLIT homolog 2 protein 99.4 2.1E-12 7E-17 95.9 10.1 74 88-165 93-166 (220)
22 2ifg_A High affinity nerve gro 99.4 1.8E-12 6E-17 101.9 10.3 97 53-164 8-116 (347)
23 2z81_A CD282 antigen, TOLL-lik 99.4 1.6E-12 5.5E-17 107.6 10.5 99 52-165 3-112 (549)
24 2z80_A TOLL-like receptor 2, v 99.4 3.2E-12 1.1E-16 100.7 10.1 105 49-169 26-141 (353)
25 2o6r_A Variable lymphocyte rec 99.3 3.8E-12 1.3E-16 91.0 8.9 90 66-168 52-141 (177)
26 4fcg_A Uncharacterized protein 99.3 2.2E-12 7.4E-17 101.2 8.1 73 93-169 223-295 (328)
27 3e6j_A Variable lymphocyte rec 99.3 6.3E-12 2.1E-16 93.7 10.1 74 89-167 102-175 (229)
28 2wfh_A SLIT homolog 2 protein 99.3 8.4E-12 2.9E-16 90.9 9.3 87 66-165 54-140 (193)
29 2o6s_A Variable lymphocyte rec 99.3 1.3E-11 4.5E-16 90.3 10.4 76 89-168 90-165 (208)
30 3m19_A Variable lymphocyte rec 99.3 1.6E-11 5.4E-16 92.5 10.7 70 91-164 99-168 (251)
31 3g39_A Variable lymphocyte rec 99.3 1.4E-11 4.6E-16 88.0 9.5 85 68-169 11-95 (170)
32 3v47_A TOLL-like receptor 5B a 99.3 3.7E-12 1.3E-16 103.2 6.7 99 66-169 30-147 (455)
33 1ogq_A PGIP-2, polygalacturona 99.3 4.4E-12 1.5E-16 98.7 6.9 75 90-169 212-286 (313)
34 2xot_A Amphoterin-induced prot 99.3 1E-11 3.4E-16 98.5 8.9 109 53-168 18-152 (361)
35 2r9u_A Variable lymphocyte rec 99.3 2E-11 6.9E-16 87.5 9.6 84 69-169 15-98 (174)
36 2ifg_A High affinity nerve gro 99.3 9.3E-12 3.2E-16 97.7 8.4 84 70-169 12-97 (347)
37 3rfs_A Internalin B, repeat mo 99.3 2.5E-11 8.4E-16 92.5 10.5 75 90-168 148-222 (272)
38 1p9a_G Platelet glycoprotein I 99.3 3.4E-11 1.1E-15 92.9 10.6 76 89-169 114-189 (290)
39 3o6n_A APL1; leucine-rich repe 99.3 4.4E-12 1.5E-16 101.1 5.8 76 89-168 83-158 (390)
40 3vq2_A TLR4, TOLL-like recepto 99.3 2.4E-11 8.1E-16 101.8 10.1 98 66-168 32-146 (606)
41 2xot_A Amphoterin-induced prot 99.3 1.4E-11 4.9E-16 97.6 8.2 75 89-168 102-179 (361)
42 3rfs_A Internalin B, repeat mo 99.3 4.4E-11 1.5E-15 91.2 10.6 75 90-168 124-198 (272)
43 3zyi_A Leucine-rich repeat-con 99.2 3E-11 1E-15 98.3 9.9 96 56-164 56-160 (452)
44 4b8c_D Glucose-repressible alc 99.2 6.9E-12 2.3E-16 108.0 6.0 69 94-168 265-333 (727)
45 1p9a_G Platelet glycoprotein I 99.2 4.7E-11 1.6E-15 92.1 10.2 73 92-169 93-165 (290)
46 4g8a_A TOLL-like receptor 4; l 99.2 2.5E-11 8.7E-16 101.3 9.3 75 91-169 486-560 (635)
47 2je0_A Acidic leucine-rich nuc 99.2 3E-11 1E-15 83.8 8.1 87 65-166 41-128 (149)
48 2id5_A Lingo-1, leucine rich r 99.2 4.7E-11 1.6E-15 97.4 10.4 97 56-165 13-118 (477)
49 3v47_A TOLL-like receptor 5B a 99.2 3.8E-11 1.3E-15 97.1 9.1 75 90-168 338-412 (455)
50 2je0_A Acidic leucine-rich nuc 99.2 1.8E-11 6.2E-16 85.0 6.2 86 66-165 17-102 (149)
51 2o6q_A Variable lymphocyte rec 99.2 9.9E-11 3.4E-15 89.0 10.8 70 91-164 101-170 (270)
52 3oja_B Anopheles plasmodium-re 99.2 1.7E-11 5.7E-16 103.2 7.1 76 89-168 89-164 (597)
53 3zyj_A Leucine-rich repeat-con 99.2 8.7E-11 3E-15 95.2 10.0 96 56-164 45-149 (440)
54 1a9n_A U2A', U2A'; complex (nu 99.2 5.7E-11 1.9E-15 84.9 7.9 86 67-169 43-130 (176)
55 1dce_A Protein (RAB geranylger 99.2 5.6E-11 1.9E-15 99.8 9.1 87 66-168 463-550 (567)
56 2ell_A Acidic leucine-rich nuc 99.2 3E-11 1E-15 85.5 6.4 86 66-166 49-135 (168)
57 4ezg_A Putative uncharacterize 99.2 4.5E-11 1.5E-15 86.9 7.4 67 92-164 105-172 (197)
58 1ozn_A Reticulon 4 receptor; N 99.2 1.4E-10 4.7E-15 88.7 10.4 71 91-165 72-143 (285)
59 3j0a_A TOLL-like receptor 5; m 99.2 4.1E-11 1.4E-15 104.5 8.4 106 56-168 16-140 (844)
60 4b8c_D Glucose-repressible alc 99.2 1.6E-11 5.4E-16 105.8 5.4 88 66-170 224-311 (727)
61 2z66_A Variable lymphocyte rec 99.2 1.2E-10 4.2E-15 89.7 9.6 73 92-168 168-240 (306)
62 1ozn_A Reticulon 4 receptor; N 99.2 1.2E-10 4.1E-15 89.0 9.4 66 95-164 149-214 (285)
63 2xwt_C Thyrotropin receptor; s 99.2 2.5E-11 8.7E-16 90.6 5.4 89 66-168 31-121 (239)
64 2ell_A Acidic leucine-rich nuc 99.2 8E-11 2.7E-15 83.3 7.2 90 66-169 71-164 (168)
65 3vq2_A TLR4, TOLL-like recepto 99.2 1.1E-10 3.7E-15 97.8 9.1 78 88-169 93-171 (606)
66 2z62_A TOLL-like receptor 4, v 99.1 1.6E-10 5.3E-15 88.0 8.7 72 90-165 67-138 (276)
67 2z62_A TOLL-like receptor 4, v 99.1 1.9E-10 6.4E-15 87.5 9.0 74 89-166 90-164 (276)
68 2ft3_A Biglycan; proteoglycan, 99.1 1.7E-10 6E-15 90.0 9.0 98 53-164 33-160 (332)
69 3t6q_A CD180 antigen; protein- 99.1 1.3E-10 4.4E-15 97.3 8.4 95 66-165 33-143 (606)
70 1dce_A Protein (RAB geranylger 99.1 1.2E-10 4.1E-15 97.8 7.9 85 67-169 442-527 (567)
71 1xku_A Decorin; proteoglycan, 99.1 2.1E-10 7.2E-15 89.4 8.8 73 90-168 207-279 (330)
72 3oja_B Anopheles plasmodium-re 99.1 2.8E-10 9.6E-15 95.7 10.0 73 89-165 113-185 (597)
73 3o6n_A APL1; leucine-rich repe 99.1 3.9E-10 1.3E-14 89.8 10.0 71 90-164 108-178 (390)
74 3zyj_A Leucine-rich repeat-con 99.1 3.7E-10 1.3E-14 91.5 10.0 66 95-164 203-268 (440)
75 1ziw_A TOLL-like receptor 3; i 99.1 2.1E-10 7.3E-15 97.3 8.8 76 89-168 63-138 (680)
76 2ft3_A Biglycan; proteoglycan, 99.1 2E-10 6.9E-15 89.6 8.0 72 89-165 207-278 (332)
77 3zyi_A Leucine-rich repeat-con 99.1 4.3E-10 1.5E-14 91.4 9.9 66 95-164 214-279 (452)
78 4ay9_X Follicle-stimulating ho 99.1 9.7E-11 3.3E-15 92.3 5.8 100 53-165 9-118 (350)
79 1xku_A Decorin; proteoglycan, 99.1 4E-10 1.4E-14 87.8 9.1 98 53-164 31-158 (330)
80 2z66_A Variable lymphocyte rec 99.1 3.7E-10 1.3E-14 87.0 8.4 71 91-165 142-213 (306)
81 2z63_A TOLL-like receptor 4, v 99.1 4.9E-10 1.7E-14 92.9 9.7 74 92-169 463-536 (570)
82 4eco_A Uncharacterized protein 99.1 3.9E-10 1.3E-14 95.6 9.1 67 97-169 511-583 (636)
83 2id5_A Lingo-1, leucine rich r 99.1 3.3E-10 1.1E-14 92.4 8.3 68 93-164 98-165 (477)
84 2z7x_B TOLL-like receptor 1, v 99.1 1.5E-10 5.2E-15 95.3 6.2 66 92-164 62-128 (520)
85 2z63_A TOLL-like receptor 4, v 99.1 4.2E-10 1.4E-14 93.3 8.8 76 90-169 67-143 (570)
86 3t6q_A CD180 antigen; protein- 99.1 4.3E-10 1.5E-14 94.1 9.0 70 92-165 98-167 (606)
87 1a9n_A U2A', U2A'; complex (nu 99.1 2.7E-10 9.2E-15 81.3 6.6 85 66-168 19-104 (176)
88 4ezg_A Putative uncharacterize 99.1 4E-10 1.4E-14 81.8 7.6 87 67-168 67-153 (197)
89 3a79_B TLR6, VLRB.59, TOLL-lik 99.1 3.4E-10 1.2E-14 94.3 8.1 83 66-164 52-134 (562)
90 1wwl_A Monocyte differentiatio 99.0 1.2E-10 4E-15 90.5 4.5 66 96-166 118-188 (312)
91 2z81_A CD282 antigen, TOLL-lik 99.0 2.1E-10 7.3E-15 94.8 6.3 90 66-168 50-140 (549)
92 1ziw_A TOLL-like receptor 3; i 99.0 8.2E-10 2.8E-14 93.7 9.5 74 89-166 87-160 (680)
93 2z7x_B TOLL-like receptor 1, v 99.0 8.4E-10 2.9E-14 90.8 8.8 90 66-168 324-416 (520)
94 4ecn_A Leucine-rich repeat pro 99.0 8.8E-10 3E-14 96.7 9.0 68 97-170 751-824 (876)
95 3j0a_A TOLL-like receptor 5; m 99.0 8.1E-10 2.8E-14 96.3 7.9 80 88-169 86-166 (844)
96 1wwl_A Monocyte differentiatio 99.0 6.9E-10 2.4E-14 86.1 6.3 23 91-113 165-187 (312)
97 3a79_B TLR6, VLRB.59, TOLL-lik 98.9 2.8E-09 9.7E-14 88.7 9.4 90 66-168 353-445 (562)
98 3oja_A Leucine-rich immune mol 98.9 1.7E-09 5.8E-14 89.1 7.9 65 97-169 167-231 (487)
99 4glp_A Monocyte differentiatio 98.9 9.9E-10 3.4E-14 85.0 5.8 45 124-169 221-268 (310)
100 2z80_A TOLL-like receptor 2, v 98.9 1.2E-09 4.1E-14 85.9 6.3 83 66-162 76-160 (353)
101 4fmz_A Internalin; leucine ric 98.9 3.3E-09 1.1E-13 82.9 8.6 70 93-168 259-328 (347)
102 4glp_A Monocyte differentiatio 98.9 1.7E-09 5.9E-14 83.7 6.8 70 96-165 114-183 (310)
103 1h6t_A Internalin B; cell adhe 98.9 5.4E-09 1.8E-13 80.5 9.4 62 95-164 130-191 (291)
104 3o53_A Protein LRIM1, AGAP0063 98.9 2.4E-09 8.4E-14 83.1 6.8 61 98-164 190-250 (317)
105 4fmz_A Internalin; leucine ric 98.9 3.3E-09 1.1E-13 82.9 7.5 66 93-164 281-346 (347)
106 1h6t_A Internalin B; cell adhe 98.9 8E-09 2.8E-13 79.5 9.4 65 93-165 106-170 (291)
107 2xwt_C Thyrotropin receptor; s 98.9 3.7E-09 1.3E-13 78.7 6.8 77 87-169 143-222 (239)
108 1m9s_A Internalin B; cell inva 98.8 1.4E-08 4.7E-13 85.9 10.2 62 95-164 127-188 (605)
109 1m9s_A Internalin B; cell inva 98.8 1.2E-08 4E-13 86.3 9.8 66 93-166 103-168 (605)
110 1h6u_A Internalin H; cell adhe 98.8 2E-08 6.9E-13 77.8 9.8 39 124-164 148-186 (308)
111 1h6u_A Internalin H; cell adhe 98.8 2.2E-08 7.7E-13 77.5 9.8 62 95-164 103-164 (308)
112 3cvr_A Invasion plasmid antige 98.8 3.6E-09 1.2E-13 88.9 5.6 102 38-164 33-153 (571)
113 3oja_A Leucine-rich immune mol 98.8 6.5E-09 2.2E-13 85.5 5.9 66 94-165 139-205 (487)
114 1xeu_A Internalin C; cellular 98.8 9E-09 3.1E-13 78.1 6.2 62 95-164 124-185 (263)
115 3o53_A Protein LRIM1, AGAP0063 98.8 1.3E-08 4.6E-13 78.9 7.1 65 97-169 167-231 (317)
116 1xeu_A Internalin C; cellular 98.8 3.4E-08 1.2E-12 74.9 9.0 59 99-165 106-164 (263)
117 1o6v_A Internalin A; bacterial 98.7 7E-08 2.4E-12 78.6 9.0 63 95-165 327-389 (466)
118 3rw6_A Nuclear RNA export fact 98.7 2.3E-08 7.9E-13 76.4 5.7 67 97-169 168-238 (267)
119 1o6v_A Internalin A; bacterial 98.7 1.1E-07 3.6E-12 77.5 9.7 66 95-168 305-370 (466)
120 3bz5_A Internalin-J, INLJ; leu 98.7 9.3E-08 3.2E-12 78.1 9.1 61 95-165 81-141 (457)
121 3g06_A SSPH2 (leucine-rich rep 98.6 5.6E-08 1.9E-12 82.4 7.2 63 97-168 239-301 (622)
122 2ast_B S-phase kinase-associat 98.6 2.4E-08 8.3E-13 77.5 4.4 66 95-164 89-156 (336)
123 1ds9_A Outer arm dynein; leuci 98.6 3.6E-10 1.2E-14 82.2 -5.9 66 97-168 91-157 (198)
124 1jl5_A Outer protein YOPM; leu 98.6 4.6E-08 1.6E-12 79.8 5.9 64 98-169 336-416 (454)
125 3bz5_A Internalin-J, INLJ; leu 98.6 1.9E-07 6.6E-12 76.2 9.5 61 95-165 187-247 (457)
126 1jl5_A Outer protein YOPM; leu 98.6 2E-07 6.9E-12 76.0 9.2 64 94-168 148-211 (454)
127 3cvr_A Invasion plasmid antige 98.6 7E-08 2.4E-12 81.1 6.0 61 99-168 180-247 (571)
128 2ca6_A RAN GTPase-activating p 98.5 1.3E-08 4.4E-13 80.9 1.0 69 94-166 239-318 (386)
129 1ds9_A Outer arm dynein; leuci 98.5 9.9E-10 3.4E-14 79.8 -5.1 82 66-165 48-129 (198)
130 3goz_A Leucine-rich repeat-con 98.5 1.5E-08 5E-13 80.1 0.7 66 99-164 80-151 (362)
131 2ca6_A RAN GTPase-activating p 98.5 3E-08 1E-12 78.8 1.7 68 94-165 211-288 (386)
132 2ast_B S-phase kinase-associat 98.5 2.9E-08 9.9E-13 77.1 1.3 68 94-165 113-183 (336)
133 3g06_A SSPH2 (leucine-rich rep 98.4 4.6E-08 1.6E-12 82.9 0.9 59 97-168 79-137 (622)
134 4ay9_X Follicle-stimulating ho 98.4 9.3E-07 3.2E-11 69.4 7.4 75 89-169 143-219 (350)
135 3sb4_A Hypothetical leucine ri 98.3 8.2E-07 2.8E-11 69.1 6.2 87 67-169 227-314 (329)
136 3rw6_A Nuclear RNA export fact 98.3 3.5E-08 1.2E-12 75.4 -1.8 72 90-165 132-210 (267)
137 3goz_A Leucine-rich repeat-con 98.3 2E-07 6.9E-12 73.5 1.3 89 65-166 21-124 (362)
138 1z7x_W Ribonuclease inhibitor; 98.2 1E-07 3.5E-12 77.0 -1.7 67 95-165 337-412 (461)
139 1z7x_W Ribonuclease inhibitor; 98.0 4.4E-07 1.5E-11 73.2 -1.1 40 125-164 339-383 (461)
140 3un9_A NLR family member X1; l 98.0 1.3E-06 4.5E-11 69.5 1.2 65 96-164 180-252 (372)
141 3un9_A NLR family member X1; l 97.8 3.8E-06 1.3E-10 66.8 0.9 64 97-164 153-224 (372)
142 1io0_A Tropomodulin; LRR prote 97.6 7.5E-06 2.6E-10 58.7 0.2 63 98-164 92-164 (185)
143 3rfe_A Platelet glycoprotein I 97.6 0.00017 5.8E-09 48.9 6.7 37 100-140 32-68 (130)
144 3e4g_A ATP synthase subunit S, 97.6 1.8E-05 6.2E-10 56.6 1.1 84 66-162 61-150 (176)
145 3ogk_B Coronatine-insensitive 97.5 1.6E-05 5.6E-10 65.9 0.8 65 97-165 461-527 (592)
146 1io0_A Tropomodulin; LRR prote 97.5 8.9E-06 3E-10 58.4 -0.9 95 65-164 35-136 (185)
147 3sb4_A Hypothetical leucine ri 97.5 0.00017 6E-09 55.8 6.1 67 87-158 261-328 (329)
148 3ogk_B Coronatine-insensitive 97.2 7.2E-05 2.5E-09 62.1 1.3 65 97-165 162-234 (592)
149 2ra8_A Uncharacterized protein 97.1 6.9E-05 2.4E-09 59.4 -0.1 67 97-164 250-320 (362)
150 4fdw_A Leucine rich hypothetic 97.1 0.0014 4.9E-08 52.4 7.4 68 90-164 291-358 (401)
151 2p1m_B Transport inhibitor res 96.9 0.00014 4.9E-09 60.2 0.2 64 97-161 154-221 (594)
152 2p1m_B Transport inhibitor res 96.9 0.00013 4.4E-09 60.5 -0.7 63 98-164 455-519 (594)
153 3rfe_A Platelet glycoprotein I 96.5 0.0029 9.9E-08 42.7 4.2 55 103-163 12-67 (130)
154 4fdw_A Leucine rich hypothetic 96.3 0.006 2.1E-07 48.8 5.5 68 89-161 261-333 (401)
155 3e4g_A ATP synthase subunit S, 96.1 0.002 7E-08 45.9 1.7 61 100-164 62-128 (176)
156 4gt6_A Cell surface protein; l 95.7 0.033 1.1E-06 44.0 7.2 68 89-162 301-368 (394)
157 4h09_A Hypothetical leucine ri 95.5 0.023 7.9E-07 44.4 5.9 68 89-161 276-343 (379)
158 4fs7_A Uncharacterized protein 95.5 0.016 5.4E-07 45.8 4.9 67 89-161 310-376 (394)
159 1pgv_A TMD-1, tropomodulin TMD 95.1 0.011 3.6E-07 42.9 2.5 92 65-161 40-136 (197)
160 2ra8_A Uncharacterized protein 94.4 0.017 5.9E-07 45.6 2.3 69 97-165 217-293 (362)
161 1pgv_A TMD-1, tropomodulin TMD 94.1 0.029 1E-06 40.6 2.8 94 65-163 69-169 (197)
162 4fs7_A Uncharacterized protein 93.8 0.13 4.3E-06 40.6 6.2 64 92-161 290-353 (394)
163 4h09_A Hypothetical leucine ri 93.7 0.16 5.5E-06 39.6 6.6 67 90-161 254-320 (379)
164 4gt6_A Cell surface protein; l 92.0 0.35 1.2E-05 38.0 6.4 64 92-161 281-344 (394)
165 2lz0_A Uncharacterized protein 65.4 13 0.00043 23.3 4.8 44 88-136 9-52 (100)
166 2lz0_A Uncharacterized protein 50.7 22 0.00077 22.1 4.0 39 122-161 15-53 (100)
167 3ox7_P MH027; urokinase-type p 37.7 13 0.00043 16.3 0.9 10 50-60 5-14 (23)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.88 E-value=1.1e-22 Score=158.97 Aligned_cols=144 Identities=24% Similarity=0.432 Sum_probs=111.4
Q ss_pred CCcHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCceEecCCC--CCeEEeecCCcCccce--ec
Q 038455 9 ACLETERTALLAIKSFFISVSDVGYDDKILPSWVGEDDGMPSDCCD-AWEGVMCNATT--RRVMQLSLNYTRRLKY--YD 83 (170)
Q Consensus 9 ~~~~~~~~aL~~~~~~~~~~~~~~~~~~~l~~W~~~~~~~~~~~c~-~w~gv~c~~~~--~~v~~L~L~~~~~l~~--~~ 83 (170)
.|.+.|++||++||+++.+|. .+.+|.. +.+||. .|.||.|+... ++|+.|+|+++. +++ ..
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~-------~l~~W~~-----~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~-l~~~~~~ 68 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPT-------TLSSWLP-----TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLN-LPKPYPI 68 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG-------GGTTCCT-----TSCTTTTCSTTEEECCSSSCCCEEEEEEECCC-CSSCEEC
T ss_pred CCCHHHHHHHHHHHHhcCCcc-------cccCCCC-----CCCCCcCCCcceEeCCCCCCceEEEEECCCCC-ccCCccc
Confidence 589999999999999997664 5789986 467774 39999997533 799999999887 554 21
Q ss_pred C--------------C---CCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhh
Q 038455 84 R--------------T---SASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPY 146 (170)
Q Consensus 84 ~--------------~---~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~ 146 (170)
+ . .+....+..|..+++|++|++++|.+++.+|. .+..+++|++|++++|.+.+.+|..
T Consensus 69 ~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~----~~~~l~~L~~L~Ls~N~l~~~~p~~ 144 (313)
T 1ogq_A 69 PSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD----FLSQIKTLVTLDFSYNALSGTLPPS 144 (313)
T ss_dssp CGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCG----GGGGCTTCCEEECCSSEEESCCCGG
T ss_pred ChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCH----HHhCCCCCCEEeCCCCccCCcCChH
Confidence 1 1 11223355677788888888888888777777 7888888888888888888888888
Q ss_pred ccCCCCCCEEeCCCCcCcccCCC
Q 038455 147 LNTLTSLTTLNLSYNKIEGSRTK 169 (170)
Q Consensus 147 ~~~l~~L~~L~L~~N~l~g~iP~ 169 (170)
+..+++|++|++++|+++|.+|.
T Consensus 145 ~~~l~~L~~L~L~~N~l~~~~p~ 167 (313)
T 1ogq_A 145 ISSLPNLVGITFDGNRISGAIPD 167 (313)
T ss_dssp GGGCTTCCEEECCSSCCEEECCG
T ss_pred HhcCCCCCeEECcCCcccCcCCH
Confidence 88888888888888888877774
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.81 E-value=5.1e-20 Score=159.13 Aligned_cols=145 Identities=28% Similarity=0.375 Sum_probs=113.1
Q ss_pred cccCCcHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEecCCCCCeEEeecCCcCcccee---
Q 038455 6 GYKACLETERTALLAIKSFFISVSDVGYDDKILPSWVGEDDGMPSDCCDAWEGVMCNATTRRVMQLSLNYTRRLKYY--- 82 (170)
Q Consensus 6 ~~~~~~~~~~~aL~~~~~~~~~~~~~~~~~~~l~~W~~~~~~~~~~~c~~w~gv~c~~~~~~v~~L~L~~~~~l~~~--- 82 (170)
+++++.+.|++||++||+++.+|. .+++|.. +.+||. |.||.|+ .++|+.|+|++.. +.+.
T Consensus 5 ~~~~~~~~~~~all~~k~~~~~~~-------~l~~W~~-----~~~~C~-w~gv~C~--~~~v~~L~L~~~~-l~g~~~~ 68 (768)
T 3rgz_A 5 SPSQSLYREIHQLISFKDVLPDKN-------LLPDWSS-----NKNPCT-FDGVTCR--DDKVTSIDLSSKP-LNVGFSA 68 (768)
T ss_dssp ---CCHHHHHHHHHHHHTTCSCTT-------SSTTCCT-----TSCGGG-STTEEEE--TTEEEEEECTTSC-CCEEHHH
T ss_pred ccccCCHHHHHHHHHHHhhCCCcc-------cccCCCC-----CCCCcC-CcceEEC--CCcEEEEECCCCC-cCCccCc
Confidence 344567889999999999997664 6889986 578999 9999997 5799999999887 5543
Q ss_pred cC--------------CCCCCC-CCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhc
Q 038455 83 DR--------------TSASFM-NMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYL 147 (170)
Q Consensus 83 ~~--------------~~~~~~-~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~ 147 (170)
.. ...+.. .+..|..+++|++|+|++|.+.+.+|.. ..++.+++|++|++++|.+.+.+|..+
T Consensus 69 l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 146 (768)
T 3rgz_A 69 VSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTL--TSLGSCSGLKFLNVSSNTLDFPGKVSG 146 (768)
T ss_dssp HHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGG--GGGGGCTTCCEEECCSSEEECCSSCCS
T ss_pred cChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCCh--HHHhCCCCCCEEECcCCccCCcCCHHH
Confidence 11 111111 1256889999999999999999876631 157889999999999999998888765
Q ss_pred -cCCCCCCEEeCCCCcCcccCC
Q 038455 148 -NTLTSLTTLNLSYNKIEGSRT 168 (170)
Q Consensus 148 -~~l~~L~~L~L~~N~l~g~iP 168 (170)
..+++|++|++++|.+++.+|
T Consensus 147 ~~~l~~L~~L~Ls~n~l~~~~~ 168 (768)
T 3rgz_A 147 GLKLNSLEVLDLSANSISGANV 168 (768)
T ss_dssp CCCCTTCSEEECCSSCCEEETH
T ss_pred hccCCCCCEEECCCCccCCcCC
Confidence 889999999999999987654
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.79 E-value=1.9e-19 Score=152.82 Aligned_cols=144 Identities=19% Similarity=0.163 Sum_probs=105.3
Q ss_pred CCcHHHHHHHHHHHhhccCCCCCCCCC------CCCCCCCCCCCCCCCCCCCCC---CceEecCCCCCeEEeecCCcCcc
Q 038455 9 ACLETERTALLAIKSFFISVSDVGYDD------KILPSWVGEDDGMPSDCCDAW---EGVMCNATTRRVMQLSLNYTRRL 79 (170)
Q Consensus 9 ~~~~~~~~aL~~~~~~~~~~~~~~~~~------~~l~~W~~~~~~~~~~~c~~w---~gv~c~~~~~~v~~L~L~~~~~l 79 (170)
+....|+.||.+++.++.++. |. ....+|+. +.++|. | .||.|+. .++|++|+|+++. +
T Consensus 26 ~~~~~d~~aL~~~~~~~~~~~----w~~~~~~~~~~~~W~~-----~~~~c~-w~~~~GV~C~~-~~~V~~L~L~~~~-l 93 (636)
T 4eco_A 26 AEYIKDYLALKEIWDALNGKN----WSQQGFGTQPGANWNF-----NKELDM-WGAQPGVSLNS-NGRVTGLSLEGFG-A 93 (636)
T ss_dssp CHHHHHHHHHHHHHHHTTGGG----CCCCC------CCCCC-----SSCGGG-TTCCTTEEECT-TCCEEEEECTTSC-C
T ss_pred hhHHHHHHHHHHHHHHcCCCC----cccCCcCCccCCCCCC-----CCCccc-ccCCCCeEEcC-CCCEEEEEecCcc-c
Confidence 445579999999999997665 21 12347987 578999 9 9999985 4899999999887 4
Q ss_pred cee--------------cCCCCC---------------------------------------------------------
Q 038455 80 KYY--------------DRTSAS--------------------------------------------------------- 88 (170)
Q Consensus 80 ~~~--------------~~~~~~--------------------------------------------------------- 88 (170)
.+. ++..+.
T Consensus 94 ~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~ 173 (636)
T 4eco_A 94 SGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQK 173 (636)
T ss_dssp EEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSC
T ss_pred CCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCcccc
Confidence 432 221110
Q ss_pred -----------------------CCCCCcCCCCCCCCEEeccCCccCcc-----------------ccCccccccC--CC
Q 038455 89 -----------------------FMNMSLFHPFEELQSLDLSENWFTGI-----------------YENRAYDSFG--SL 126 (170)
Q Consensus 89 -----------------------~~~~~~~~~l~~L~~L~ls~N~l~~~-----------------~p~~~~~~~~--~l 126 (170)
. .|..|+++++|++|+|++|.+++. +|. .++ ++
T Consensus 174 ~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~----~l~~~~l 248 (636)
T 4eco_A 174 SIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE----DLKWDNL 248 (636)
T ss_dssp CCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS----CCCGGGC
T ss_pred ccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCch----hhhhccc
Confidence 1 133467778888888888888775 676 777 88
Q ss_pred CCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCc-Ccc-cCCC
Q 038455 127 KQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNK-IEG-SRTK 169 (170)
Q Consensus 127 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~-l~g-~iP~ 169 (170)
++|++|++++|.+.+.+|..|+++++|++|++++|+ ++| .+|.
T Consensus 249 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~ 293 (636)
T 4eco_A 249 KDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKD 293 (636)
T ss_dssp TTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHH
T ss_pred CCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchH
Confidence 888888888888888888888888888888888887 777 6663
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.75 E-value=2.3e-18 Score=150.65 Aligned_cols=74 Identities=20% Similarity=0.232 Sum_probs=60.9
Q ss_pred CCcCCCCCCCCEEeccCCccCc-----------------cccCccccccC--CCCCCCEEECCCCCCCCCChhhccCCCC
Q 038455 92 MSLFHPFEELQSLDLSENWFTG-----------------IYENRAYDSFG--SLKQLKMLNLGFNYVNDSILPYLNTLTS 152 (170)
Q Consensus 92 ~~~~~~l~~L~~L~ls~N~l~~-----------------~~p~~~~~~~~--~l~~L~~L~Ls~N~l~g~~p~~~~~l~~ 152 (170)
|..|+.|++|+.|+|++|.+++ .+|. .++ ++++|+.|+|++|.+.+.+|..|+++++
T Consensus 441 P~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~----~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~ 516 (876)
T 4ecn_A 441 SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENE----ELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPE 516 (876)
T ss_dssp CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS----CCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSS
T ss_pred hHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCCh----hhhhccCCCCCEEECcCCCCCccChHHHhCCCC
Confidence 3457788888888888888888 3777 776 8888888998888888888888888888
Q ss_pred CCEEeCCCCc-Ccc-cCCC
Q 038455 153 LTTLNLSYNK-IEG-SRTK 169 (170)
Q Consensus 153 L~~L~L~~N~-l~g-~iP~ 169 (170)
|+.|+|++|+ ++| .+|.
T Consensus 517 L~~L~Ls~N~~lsg~~iP~ 535 (876)
T 4ecn_A 517 LQSLNIACNRGISAAQLKA 535 (876)
T ss_dssp CCEEECTTCTTSCHHHHHH
T ss_pred CCEEECcCCCCcccccchH
Confidence 9999998887 887 6663
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.70 E-value=2.9e-18 Score=134.78 Aligned_cols=138 Identities=13% Similarity=0.145 Sum_probs=101.3
Q ss_pred cCCcHHHHHHHHHHHhhcc-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEecC--------CCCCeEEeecCCcCc
Q 038455 8 KACLETERTALLAIKSFFI-SVSDVGYDDKILPSWVGEDDGMPSDCCDAWEGVMCNA--------TTRRVMQLSLNYTRR 78 (170)
Q Consensus 8 ~~~~~~~~~aL~~~~~~~~-~~~~~~~~~~~l~~W~~~~~~~~~~~c~~w~gv~c~~--------~~~~v~~L~L~~~~~ 78 (170)
.++...|+.||++||..+. ++. .++..|.. ......++|. |.|+.|.. ...+|+.|+|+++.
T Consensus 22 ~~~~~~~~~aLl~~k~~~~~~~~------~~~~~w~~-~~~~~~~~~~-~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~- 92 (328)
T 4fcg_A 22 STALRPYHDVLSQWQRHYNADRN------RWHSAWRQ-ANSNNPQIET-RTGRALKATADLLEDATQPGRVALELRSVP- 92 (328)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCCT------THHHHHHH-HTTTCTTSCC-SHHHHHHHHHHHHHHHTSTTCCEEEEESSC-
T ss_pred cccCchHHHHHHHHHHhccCCch------hhhhhhcc-cccccccccc-cCCcchhhhHHHHhcccccceeEEEccCCC-
Confidence 4456779999999999883 554 45678841 0002467899 99999952 34689999999988
Q ss_pred cceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeC
Q 038455 79 LKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNL 158 (170)
Q Consensus 79 l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L 158 (170)
++.+ +..+..+++|++|++++|.++ .+|. .+..+++|++|+|++|.+. .+|..++.+++|++|++
T Consensus 93 l~~l---------p~~l~~l~~L~~L~L~~n~l~-~lp~----~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 93 LPQF---------PDQAFRLSHLQHMTIDAAGLM-ELPD----TMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp CSSC---------CSCGGGGTTCSEEEEESSCCC-CCCS----CGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred chhc---------ChhhhhCCCCCEEECCCCCcc-chhH----HHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 4422 344666788888888888887 4676 7778888888888888887 67777888888888888
Q ss_pred CCCcCcccCCC
Q 038455 159 SYNKIEGSRTK 169 (170)
Q Consensus 159 ~~N~l~g~iP~ 169 (170)
++|++.+.+|.
T Consensus 158 ~~n~~~~~~p~ 168 (328)
T 4fcg_A 158 RACPELTELPE 168 (328)
T ss_dssp EEETTCCCCCS
T ss_pred CCCCCccccCh
Confidence 88777777775
No 6
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.59 E-value=1.2e-14 Score=108.62 Aligned_cols=109 Identities=23% Similarity=0.310 Sum_probs=67.4
Q ss_pred CCCCCCCCCceEecCC---------CCCeEEeecCCcCccceec--------------CC--CCCCCCCCcCCCCCCCCE
Q 038455 49 PSDCCDAWEGVMCNAT---------TRRVMQLSLNYTRRLKYYD--------------RT--SASFMNMSLFHPFEELQS 103 (170)
Q Consensus 49 ~~~~c~~w~gv~c~~~---------~~~v~~L~L~~~~~l~~~~--------------~~--~~~~~~~~~~~~l~~L~~ 103 (170)
....|+ |.+|.|... ...++.|+|+++. ++.+. +. .+..+++..|..+++|++
T Consensus 15 ~~~~Cs-~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~ 92 (229)
T 3e6j_A 15 SQCSCS-GTTVDCRSKRHASVPAGIPTNAQILYLHDNQ-ITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTV 92 (229)
T ss_dssp TTCEEE-TTEEECTTSCCSSCCSCCCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCEEe-CCEeEccCCCcCccCCCCCCCCCEEEcCCCc-cCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCE
Confidence 367899 999999641 2356778888776 43331 11 112333344556666666
Q ss_pred EeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCc
Q 038455 104 LDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIE 164 (170)
Q Consensus 104 L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~ 164 (170)
|+|++|.+++..+. .|..+++|+.|+|++|+|. .+|..+..+++|++|+|++|+|+
T Consensus 93 L~Ls~N~l~~l~~~----~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~ 148 (229)
T 3e6j_A 93 LDLGTNQLTVLPSA----VFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK 148 (229)
T ss_dssp EECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCC
T ss_pred EECCCCcCCccChh----HhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCC
Confidence 66666666654444 4566666666666666666 55666666666666666666666
No 7
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.55 E-value=3.4e-14 Score=101.59 Aligned_cols=100 Identities=25% Similarity=0.296 Sum_probs=82.2
Q ss_pred CCCCCceEecCC---------CCCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCcccccc
Q 038455 53 CDAWEGVMCNAT---------TRRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSF 123 (170)
Q Consensus 53 c~~w~gv~c~~~---------~~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~ 123 (170)
|+ |+.+.|... ...++.|+|+++. +..+.+..|..+++|++|+|++|+|++..+. .|
T Consensus 9 C~-~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~---------i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~----~f 74 (170)
T 3g39_A 9 CS-GTTVDCSGKSLASVPTGIPTTTQVLYLYDNQ---------ITKLEPGVFDRLTQLTRLDLDNNQLTVLPAG----VF 74 (170)
T ss_dssp EE-TTEEECTTSCCSSCCSCCCTTCSEEECCSSC---------CCCCCTTTTTTCTTCSEEECCSSCCCCCCTT----TT
T ss_pred cC-CCEEEeCCCCcCccCccCCCCCcEEEcCCCc---------CCccChhhhcCcccCCEEECCCCCcCccChh----hc
Confidence 67 888888641 2345666666666 3345577899999999999999999987666 78
Q ss_pred CCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCccc
Q 038455 124 GSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGS 166 (170)
Q Consensus 124 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~ 166 (170)
..+++|+.|+|++|+|++..+..|..+++|+.|+|++|+++..
T Consensus 75 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 75 DKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred cCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 9999999999999999977777899999999999999999854
No 8
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.54 E-value=2.2e-14 Score=104.43 Aligned_cols=102 Identities=29% Similarity=0.372 Sum_probs=54.6
Q ss_pred CCCCCceEecCC---------CCCeEEeecCCcCccceecCCCCCCCCC-CcCCCCCCCCEEeccCCccCccccCccccc
Q 038455 53 CDAWEGVMCNAT---------TRRVMQLSLNYTRRLKYYDRTSASFMNM-SLFHPFEELQSLDLSENWFTGIYENRAYDS 122 (170)
Q Consensus 53 c~~w~gv~c~~~---------~~~v~~L~L~~~~~l~~~~~~~~~~~~~-~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~ 122 (170)
|. |..+.|... ...++.|+++++. ++.+ .+ ..|..+++|++|+|++|.+++..|. .
T Consensus 8 C~-~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~-i~~~--------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~----~ 73 (192)
T 1w8a_A 8 CE-GTTVDCTGRGLKEIPRDIPLHTTELLLNDNE-LGRI--------SSDGLFGRLPHLVKLELKRNQLTGIEPN----A 73 (192)
T ss_dssp EE-TTEEECTTSCCSSCCSCCCTTCSEEECCSCC-CCSB--------CCSCSGGGCTTCCEEECCSSCCCCBCTT----T
T ss_pred EC-CCEEEcCCCCcCcCccCCCCCCCEEECCCCc-CCcc--------CCccccccCCCCCEEECCCCCCCCcCHh----H
Confidence 66 888888531 1256677777766 3332 22 1245555555555555555554444 4
Q ss_pred cCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccCC
Q 038455 123 FGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRT 168 (170)
Q Consensus 123 ~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP 168 (170)
|..+++|+.|+|++|+|++..|..|..+++|++|+|++|++++.+|
T Consensus 74 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 119 (192)
T 1w8a_A 74 FEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMP 119 (192)
T ss_dssp TTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECT
T ss_pred cCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCH
Confidence 5555555555555555554444445555555555555555554433
No 9
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.54 E-value=6e-14 Score=100.49 Aligned_cols=98 Identities=24% Similarity=0.407 Sum_probs=54.0
Q ss_pred CCCCCceEecCC---------CCCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCcccccc
Q 038455 53 CDAWEGVMCNAT---------TRRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSF 123 (170)
Q Consensus 53 c~~w~gv~c~~~---------~~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~ 123 (170)
|+ |.++.|... ...++.|+++++. ++. +++..|..+++|++|++++|.+++..+. .+
T Consensus 7 C~-~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~-l~~--------~~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~ 72 (177)
T 2o6r_A 7 CS-GTEIRCNSKGLTSVPTGIPSSATRLELESNK-LQS--------LPHGVFDKLTQLTKLSLSQNQIQSLPDG----VF 72 (177)
T ss_dssp EE-TTEEECCSSCCSSCCTTCCTTCSEEECCSSC-CCC--------CCTTTTTTCTTCSEEECCSSCCCCCCTT----TT
T ss_pred eC-CCEEEecCCCCccCCCCCCCCCcEEEeCCCc-ccE--------eCHHHhcCcccccEEECCCCcceEeChh----Hc
Confidence 77 999999641 2356777777766 332 2333445555555555555555543333 34
Q ss_pred CCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCc
Q 038455 124 GSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIE 164 (170)
Q Consensus 124 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~ 164 (170)
..+++|+.|++++|++++..+..+..+++|+.|++++|+++
T Consensus 73 ~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 113 (177)
T 2o6r_A 73 DKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLK 113 (177)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred cCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcce
Confidence 55555555555555555444444455555555555555554
No 10
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.51 E-value=1.4e-13 Score=100.89 Aligned_cols=107 Identities=25% Similarity=0.318 Sum_probs=69.0
Q ss_pred CCCCCceEecCC---------CCCeEEeecCCcCccceec--------------CCC--CCCCCCCcCCCCCCCCEEecc
Q 038455 53 CDAWEGVMCNAT---------TRRVMQLSLNYTRRLKYYD--------------RTS--ASFMNMSLFHPFEELQSLDLS 107 (170)
Q Consensus 53 c~~w~gv~c~~~---------~~~v~~L~L~~~~~l~~~~--------------~~~--~~~~~~~~~~~l~~L~~L~ls 107 (170)
|. |.+|.|... ..+++.|+++++. ++.+. +.. +..+++..|..+++|++|+++
T Consensus 7 C~-~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 84 (208)
T 2o6s_A 7 CS-GTTVECYSQGRTSVPTGIPAQTTYLDLETNS-LKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS 84 (208)
T ss_dssp EE-TTEEECCSSCCSSCCSCCCTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred EC-CCEEEecCCCccCCCCCCCCCCcEEEcCCCc-cCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECC
Confidence 78 999999642 2357788888776 43221 111 123334445666777777777
Q ss_pred CCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcc
Q 038455 108 ENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEG 165 (170)
Q Consensus 108 ~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g 165 (170)
+|.+++..+. .+..+++|+.|++++|++.+..+..|..+++|+.|++++|++++
T Consensus 85 ~n~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 138 (208)
T 2o6s_A 85 TNQLQSLPNG----VFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS 138 (208)
T ss_dssp SSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCcCCccCHh----HhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccce
Confidence 7777665444 56677777777777777775555566777777777777777763
No 11
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.50 E-value=2.7e-14 Score=123.36 Aligned_cols=92 Identities=27% Similarity=0.378 Sum_probs=82.6
Q ss_pred CCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChh
Q 038455 66 RRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILP 145 (170)
Q Consensus 66 ~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~ 145 (170)
..++.|+|+++. +++. .|..++.++.|+.|+|++|+++|.+|. .++.+++|+.|+|++|+++|.+|.
T Consensus 632 ~~L~~LdLs~N~-l~g~--------ip~~l~~l~~L~~L~Ls~N~l~g~ip~----~l~~L~~L~~LdLs~N~l~g~ip~ 698 (768)
T 3rgz_A 632 GSMMFLDMSYNM-LSGY--------IPKEIGSMPYLFILNLGHNDISGSIPD----EVGDLRGLNILDLSSNKLDGRIPQ 698 (768)
T ss_dssp BCCCEEECCSSC-CBSC--------CCGGGGGCTTCCEEECCSSCCCSCCCG----GGGGCTTCCEEECCSSCCEECCCG
T ss_pred ccccEEECcCCc-cccc--------CCHHHhccccCCEEeCcCCccCCCCCh----HHhCCCCCCEEECCCCcccCcCCh
Confidence 356778888877 4433 467789999999999999999999999 999999999999999999999999
Q ss_pred hccCCCCCCEEeCCCCcCcccCCCC
Q 038455 146 YLNTLTSLTTLNLSYNKIEGSRTKQ 170 (170)
Q Consensus 146 ~~~~l~~L~~L~L~~N~l~g~iP~~ 170 (170)
.+..++.|++|+|++|+++|.||..
T Consensus 699 ~l~~l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 699 AMSALTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp GGGGCCCCSEEECCSSEEEEECCSS
T ss_pred HHhCCCCCCEEECcCCcccccCCCc
Confidence 9999999999999999999999963
No 12
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.49 E-value=1.3e-13 Score=100.58 Aligned_cols=100 Identities=26% Similarity=0.337 Sum_probs=69.7
Q ss_pred CCCCCceEecCC---------CCCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCcccccc
Q 038455 53 CDAWEGVMCNAT---------TRRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSF 123 (170)
Q Consensus 53 c~~w~gv~c~~~---------~~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~ 123 (170)
|. |..+.|... ...++.|+++++. ++ .+ +..|..+++|+.|+|++|.+++..+. .|
T Consensus 10 C~-~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~-i~--------~i-p~~~~~l~~L~~L~Ls~N~i~~i~~~----~f 74 (193)
T 2wfh_A 10 CL-DTVVRCSNKGLKVLPKGIPRDVTELYLDGNQ-FT--------LV-PKELSNYKHLTLIDLSNNRISTLSNQ----SF 74 (193)
T ss_dssp EE-TTEEECTTSCCSSCCSCCCTTCCEEECCSSC-CC--------SC-CGGGGGCTTCCEEECCSSCCCCCCTT----TT
T ss_pred eC-CCEEEcCCCCCCcCCCCCCCCCCEEECCCCc-Cc--------hh-HHHhhcccCCCEEECCCCcCCEeCHh----Hc
Confidence 56 777888531 2356777777766 33 22 25677777788888888877776655 67
Q ss_pred CCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccCC
Q 038455 124 GSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRT 168 (170)
Q Consensus 124 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP 168 (170)
..+++|+.|+|++|+|++..|..|..+++|+.|+|++|+|+ .+|
T Consensus 75 ~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~-~~~ 118 (193)
T 2wfh_A 75 SNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS-VVP 118 (193)
T ss_dssp TTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCC-BCC
T ss_pred cCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCC-eeC
Confidence 77777888888888777666667777777888888777777 344
No 13
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.49 E-value=1.9e-13 Score=101.56 Aligned_cols=107 Identities=24% Similarity=0.294 Sum_probs=72.6
Q ss_pred CCCCCceEecCC---------CCCeEEeecCCcCccceec--------------CCC--CCCCCCCcCCCCCCCCEEecc
Q 038455 53 CDAWEGVMCNAT---------TRRVMQLSLNYTRRLKYYD--------------RTS--ASFMNMSLFHPFEELQSLDLS 107 (170)
Q Consensus 53 c~~w~gv~c~~~---------~~~v~~L~L~~~~~l~~~~--------------~~~--~~~~~~~~~~~l~~L~~L~ls 107 (170)
|. |..|.|... ...++.|+++++. ++.+. +.. +..+.+..|..+++|++|+|+
T Consensus 11 C~-~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~-i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls 88 (220)
T 2v9t_B 11 CS-NNIVDCRGKGLTEIPTNLPETITEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY 88 (220)
T ss_dssp EE-TTEEECTTSCCSSCCSSCCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECC
T ss_pred EC-CCEEEcCCCCcCcCCCccCcCCCEEECCCCc-CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECC
Confidence 67 888888641 2357788888776 44332 111 223345567777777777777
Q ss_pred CCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcc
Q 038455 108 ENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEG 165 (170)
Q Consensus 108 ~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g 165 (170)
+|.++...+. .|..+++|+.|+|++|+|.+..|..|..+++|+.|+|++|+|++
T Consensus 89 ~N~l~~l~~~----~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 142 (220)
T 2v9t_B 89 GNKITELPKS----LFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQT 142 (220)
T ss_dssp SSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCcCCccCHh----HccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCE
Confidence 7777764444 56777777788888887777777777778888888888888774
No 14
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.46 E-value=4.7e-13 Score=99.37 Aligned_cols=110 Identities=20% Similarity=0.242 Sum_probs=76.8
Q ss_pred CCCCCceEecCC---------CCCeEEeecCCcCccceecC---------------C--CCCCCCCCcCCCCCCCCEEec
Q 038455 53 CDAWEGVMCNAT---------TRRVMQLSLNYTRRLKYYDR---------------T--SASFMNMSLFHPFEELQSLDL 106 (170)
Q Consensus 53 c~~w~gv~c~~~---------~~~v~~L~L~~~~~l~~~~~---------------~--~~~~~~~~~~~~l~~L~~L~l 106 (170)
|. |..+.|... ...++.|+|+++. ++.+.. . .+..+.+..|..+++|++|+|
T Consensus 11 C~-~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 88 (220)
T 2v70_A 11 CE-GTTVDCSNQKLNKIPEHIPQYTAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL 88 (220)
T ss_dssp EE-TTEEECCSSCCSSCCSCCCTTCSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred EC-CCEeEeCCCCcccCccCCCCCCCEEEcCCCc-CCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEEC
Confidence 66 888888531 1245677777776 544421 1 122344556777888888888
Q ss_pred cCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccCC
Q 038455 107 SENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRT 168 (170)
Q Consensus 107 s~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP 168 (170)
++|.+++..+. .|..+++|+.|+|++|+|.+..|..|..+++|+.|+|++|++++..|
T Consensus 89 s~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 146 (220)
T 2v70_A 89 TSNRLENVQHK----MFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP 146 (220)
T ss_dssp CSSCCCCCCGG----GGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCT
T ss_pred CCCccCccCHh----HhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECH
Confidence 88888776665 67788888888888888887777788888888888888888886545
No 15
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.45 E-value=2.8e-13 Score=98.54 Aligned_cols=90 Identities=30% Similarity=0.326 Sum_probs=79.2
Q ss_pred CCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChh
Q 038455 66 RRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILP 145 (170)
Q Consensus 66 ~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~ 145 (170)
..++.|+|+++. ++ .+.+..|..+++|++|+|++|++++..+. .|..+++|+.|+|++|+|++..|.
T Consensus 54 ~~L~~L~Ls~N~-l~--------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~ 120 (192)
T 1w8a_A 54 PHLVKLELKRNQ-LT--------GIEPNAFEGASHIQELQLGENKIKEISNK----MFLGLHQLKTLNLYDNQISCVMPG 120 (192)
T ss_dssp TTCCEEECCSSC-CC--------CBCTTTTTTCTTCCEEECCSCCCCEECSS----SSTTCTTCCEEECCSSCCCEECTT
T ss_pred CCCCEEECCCCC-CC--------CcCHhHcCCcccCCEEECCCCcCCccCHH----HhcCCCCCCEEECCCCcCCeeCHH
Confidence 467888888887 43 34567899999999999999999998776 799999999999999999998999
Q ss_pred hccCCCCCCEEeCCCCcCcccCC
Q 038455 146 YLNTLTSLTTLNLSYNKIEGSRT 168 (170)
Q Consensus 146 ~~~~l~~L~~L~L~~N~l~g~iP 168 (170)
.|..+++|++|+|++|++++..|
T Consensus 121 ~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 121 SFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp SSTTCTTCCEEECTTCCBCCSGG
T ss_pred HhhcCCCCCEEEeCCCCccCcCc
Confidence 99999999999999999987654
No 16
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.43 E-value=1.1e-12 Score=94.09 Aligned_cols=86 Identities=27% Similarity=0.292 Sum_probs=72.2
Q ss_pred CeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhh
Q 038455 67 RVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPY 146 (170)
Q Consensus 67 ~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~ 146 (170)
.++.|+|+++. + ..+.+..|..+++|++|+|++|+|++..+. .|..+++|+.|+|++|+|.+..+..
T Consensus 34 ~L~~L~Ls~N~-l--------~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~----~~~~l~~L~~L~L~~N~l~~l~~~~ 100 (174)
T 2r9u_A 34 DKQRLWLNNNQ-I--------TKLEPGVFDHLVNLQQLYFNSNKLTAIPTG----VFDKLTQLTQLDLNDNHLKSIPRGA 100 (174)
T ss_dssp TCSEEECCSSC-C--------CCCCTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred CCcEEEeCCCC-c--------cccCHHHhcCCcCCCEEECCCCCCCccChh----HhCCcchhhEEECCCCccceeCHHH
Confidence 45667777766 3 344567899999999999999999996555 6789999999999999999766667
Q ss_pred ccCCCCCCEEeCCCCcCcc
Q 038455 147 LNTLTSLTTLNLSYNKIEG 165 (170)
Q Consensus 147 ~~~l~~L~~L~L~~N~l~g 165 (170)
|..+++|+.|+|++|++..
T Consensus 101 ~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 101 FDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp TTTCTTCSEEECCSSCBCT
T ss_pred hccccCCCEEEeCCCCccc
Confidence 9999999999999999874
No 17
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.42 E-value=7.5e-13 Score=98.26 Aligned_cols=76 Identities=29% Similarity=0.333 Sum_probs=68.5
Q ss_pred CCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccC
Q 038455 88 SFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSR 167 (170)
Q Consensus 88 ~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~i 167 (170)
..+.+..|..+++|++|+|++|.+++..|. .|..+++|+.|+|++|+|++..|..|..+++|+.|+|++|++.+..
T Consensus 94 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 94 ENVQHKMFKGLESLKTLMLRSNRITCVGND----SFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp CCCCGGGGTTCSSCCEEECTTSCCCCBCTT----SSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred CccCHhHhcCCcCCCEEECCCCcCCeECHh----HcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence 344566789999999999999999998887 8999999999999999999888999999999999999999998643
No 18
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.42 E-value=6.1e-13 Score=100.31 Aligned_cols=71 Identities=28% Similarity=0.387 Sum_probs=45.9
Q ss_pred CCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcc
Q 038455 91 NMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEG 165 (170)
Q Consensus 91 ~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g 165 (170)
.+..|..+++|++|++++|.+++..+. .|..+++|+.|+|++|+|.+..+..|..+++|+.|+|++|++++
T Consensus 75 ~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 145 (251)
T 3m19_A 75 SAGVFDDLTELGTLGLANNQLASLPLG----VFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS 145 (251)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CHhHhccCCcCCEEECCCCcccccChh----HhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCc
Confidence 344456666666666666666665444 56666777777777777765555556667777777777777763
No 19
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.41 E-value=5.1e-13 Score=111.63 Aligned_cols=94 Identities=18% Similarity=0.194 Sum_probs=51.2
Q ss_pred CCeEEeecCCcCccceec--------------CCC--CCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCC
Q 038455 66 RRVMQLSLNYTRRLKYYD--------------RTS--ASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQL 129 (170)
Q Consensus 66 ~~v~~L~L~~~~~l~~~~--------------~~~--~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L 129 (170)
..++.|+|+++. ++.+. +.. +..+++..|.+|++|++|+|++|++++..+. .|.++++|
T Consensus 52 ~~~~~LdLs~N~-i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~----~f~~L~~L 126 (635)
T 4g8a_A 52 FSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG----AFSGLSSL 126 (635)
T ss_dssp TTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGG----GGTTCTTC
T ss_pred cCCCEEEeeCCC-CCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHH----HhcCCCCC
Confidence 367899999887 54442 111 1233344455555555555555555554333 45555555
Q ss_pred CEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCc
Q 038455 130 KMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIE 164 (170)
Q Consensus 130 ~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~ 164 (170)
++|++++|++++..+..|+++++|++|+|++|.++
T Consensus 127 ~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~ 161 (635)
T 4g8a_A 127 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 161 (635)
T ss_dssp CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCC
T ss_pred CEEECCCCcCCCCChhhhhcCcccCeeccccCccc
Confidence 55555555555444444555555555555555554
No 20
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.41 E-value=1.1e-12 Score=99.97 Aligned_cols=68 Identities=26% Similarity=0.405 Sum_probs=38.8
Q ss_pred CcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCc
Q 038455 93 SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIE 164 (170)
Q Consensus 93 ~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~ 164 (170)
..|..+++|++|++++|.+.+..+. .+..+++|+.|++++|.+.+..|..|..+++|++|+|++|.++
T Consensus 79 ~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 146 (270)
T 2o6q_A 79 GIFKELKNLETLWVTDNKLQALPIG----VFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ 146 (270)
T ss_dssp TTTSSCTTCCEEECCSSCCCCCCTT----TTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred hhhcCCCCCCEEECCCCcCCcCCHh----HcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCC
Confidence 3344555555555555555544333 4555566666666666666555555666666666666666665
No 21
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.39 E-value=2.1e-12 Score=95.89 Aligned_cols=74 Identities=24% Similarity=0.254 Sum_probs=66.7
Q ss_pred CCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcc
Q 038455 88 SFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEG 165 (170)
Q Consensus 88 ~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g 165 (170)
..+++..|..+++|++|+|++|.+++..|. .|..+++|+.|+|++|+|++..+..|..+++|+.|+|++|++..
T Consensus 93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 93 TELPKSLFEGLFSLQLLLLNANKINCLRVD----AFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CccCHhHccCCCCCCEEECCCCCCCEeCHH----HcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 345566789999999999999999998887 89999999999999999998877889999999999999999863
No 22
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.39 E-value=1.8e-12 Score=101.90 Aligned_cols=97 Identities=21% Similarity=0.311 Sum_probs=71.2
Q ss_pred CCCCCceEecCC-C----------CCeEEeecCC-cCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccc
Q 038455 53 CDAWEGVMCNAT-T----------RRVMQLSLNY-TRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAY 120 (170)
Q Consensus 53 c~~w~gv~c~~~-~----------~~v~~L~L~~-~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~ 120 (170)
|. |..|.|... . ..++.|+|++ +. ++ .+++..|..|++|+.|+|++|+|++..|.
T Consensus 8 C~-~~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~-l~--------~~~~~~~~~l~~L~~L~l~~N~l~~~~~~--- 74 (347)
T 2ifg_A 8 HG-SSGLRCTRDGALDSLHHLPGAENLTELYIENQQH-LQ--------HLELRDLRGLGELRNLTIVKSGLRFVAPD--- 74 (347)
T ss_dssp SS-SSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSS-CC--------EECGGGSCSCCCCSEEECCSSCCCEECTT---
T ss_pred cc-CCEEEcCCCCCCCccCCCCCCCCeeEEEccCCCC-CC--------CcChhHhccccCCCEEECCCCccceeCHH---
Confidence 88 999999643 0 1255566654 44 33 33556788888888888888888887776
Q ss_pred cccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCc
Q 038455 121 DSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIE 164 (170)
Q Consensus 121 ~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~ 164 (170)
.|..+++|+.|+|++|+|++..+..|..+. |+.|+|.+|+|.
T Consensus 75 -~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 75 -AFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp -GGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred -HhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 788888888888888888865555566555 888888888876
No 23
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.39 E-value=1.6e-12 Score=107.62 Aligned_cols=99 Identities=28% Similarity=0.412 Sum_probs=77.7
Q ss_pred CCCCCCceEecCC-----------CCCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccc
Q 038455 52 CCDAWEGVMCNAT-----------TRRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAY 120 (170)
Q Consensus 52 ~c~~w~gv~c~~~-----------~~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~ 120 (170)
.|. |.|+ |+.. ...++.|+++++. +++. .+..|..+++|++|++++|.+++..|.
T Consensus 3 ~C~-~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~-l~~~--------~~~~~~~l~~L~~L~Ls~n~i~~~~~~--- 68 (549)
T 2z81_A 3 SCD-ASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNK-ITYI--------GHGDLRACANLQVLILKSSRINTIEGD--- 68 (549)
T ss_dssp EEC-TTSE-EECTTSCCSSCCSCCCTTCCEEECCSSC-CCEE--------CSSTTSSCTTCCEEECTTSCCCEECTT---
T ss_pred cCC-CCce-EECCCCccccccccCCCCccEEECcCCc-cCcc--------ChhhhhcCCcccEEECCCCCcCccChh---
Confidence 477 8888 7632 2357778888777 4433 456688888899999999988887776
Q ss_pred cccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcc
Q 038455 121 DSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEG 165 (170)
Q Consensus 121 ~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g 165 (170)
.|..+++|++|++++|++.+..|..|+.+++|++|++++|++++
T Consensus 69 -~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 112 (549)
T 2z81_A 69 -AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQT 112 (549)
T ss_dssp -TTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSS
T ss_pred -hccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccc
Confidence 78888889999999888887777778888888888888888874
No 24
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.36 E-value=3.2e-12 Score=100.71 Aligned_cols=105 Identities=34% Similarity=0.513 Sum_probs=79.6
Q ss_pred CCCCCCCCCceEecCC-----------CCCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccC
Q 038455 49 PSDCCDAWEGVMCNAT-----------TRRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYEN 117 (170)
Q Consensus 49 ~~~~c~~w~gv~c~~~-----------~~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~ 117 (170)
....|. |.++ |+.. ...++.|+++++. ++. +++..|..+++|++|++++|.+++..|.
T Consensus 26 ~~~~C~-~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~-i~~--------~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 94 (353)
T 2z80_A 26 ASLSCD-RNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNR-ITY--------ISNSDLQRCVNLQALVLTSNGINTIEED 94 (353)
T ss_dssp -CCEEC-TTSE-EECCSTTCSSCCTTCCTTCCEEECTTSC-CCE--------ECTTTTTTCTTCCEEECTTSCCCEECTT
T ss_pred cCCCCC-CCeE-eeCCCCCcccccccccccCcEEECCCCc-Ccc--------cCHHHhccCCCCCEEECCCCccCccCHh
Confidence 356788 9998 6532 2356777777776 443 3455688888999999999998887676
Q ss_pred ccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccCCC
Q 038455 118 RAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRTK 169 (170)
Q Consensus 118 ~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP~ 169 (170)
.+..+++|++|++++|++++..+..|..+++|++|++++|+++ .+|.
T Consensus 95 ----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~ 141 (353)
T 2z80_A 95 ----SFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGE 141 (353)
T ss_dssp ----TTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCS
T ss_pred ----hcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCc
Confidence 7888899999999999988655556888899999999999887 4553
No 25
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.35 E-value=3.8e-12 Score=91.03 Aligned_cols=90 Identities=27% Similarity=0.304 Sum_probs=75.8
Q ss_pred CCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChh
Q 038455 66 RRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILP 145 (170)
Q Consensus 66 ~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~ 145 (170)
..++.|+++++. ++ .+++..|..+++|++|++++|.+++..+. .+..+++|+.|++++|++.+..+.
T Consensus 52 ~~L~~L~l~~n~-l~--------~~~~~~~~~l~~L~~L~l~~N~l~~~~~~----~~~~l~~L~~L~l~~N~l~~~~~~ 118 (177)
T 2o6r_A 52 TQLTKLSLSQNQ-IQ--------SLPDGVFDKLTKLTILYLHENKLQSLPNG----VFDKLTQLKELALDTNQLKSVPDG 118 (177)
T ss_dssp TTCSEEECCSSC-CC--------CCCTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCSCCCTT
T ss_pred ccccEEECCCCc-ce--------EeChhHccCCCccCEEECCCCCccccCHH----HhhCCcccCEEECcCCcceEeCHH
Confidence 467888888877 43 34556688999999999999999987665 688999999999999999976666
Q ss_pred hccCCCCCCEEeCCCCcCcccCC
Q 038455 146 YLNTLTSLTTLNLSYNKIEGSRT 168 (170)
Q Consensus 146 ~~~~l~~L~~L~L~~N~l~g~iP 168 (170)
.+..+++|+.|++++|++++..|
T Consensus 119 ~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 119 IFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp TTTTCTTCCEEECCSSCBCCCHH
T ss_pred HhcCCcccCEEEecCCCeeccCc
Confidence 67899999999999999987654
No 26
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.34 E-value=2.2e-12 Score=101.20 Aligned_cols=73 Identities=23% Similarity=0.126 Sum_probs=64.7
Q ss_pred CcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccCCC
Q 038455 93 SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRTK 169 (170)
Q Consensus 93 ~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP~ 169 (170)
..+..+++|++|++++|.+.+.+|. .+..+++|+.|++++|.+.+.+|..+..+++|+.|+|++|++.|.+|+
T Consensus 223 ~~l~~l~~L~~L~Ls~n~~~~~~p~----~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~ 295 (328)
T 4fcg_A 223 PAIHHLPKLEELDLRGCTALRNYPP----IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS 295 (328)
T ss_dssp GGGGGCTTCCEEECTTCTTCCBCCC----CTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCG
T ss_pred hhhccCCCCCEEECcCCcchhhhHH----HhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccH
Confidence 3577888999999999888888887 888999999999999998889998899999999999999999988886
No 27
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.34 E-value=6.3e-12 Score=93.74 Aligned_cols=74 Identities=22% Similarity=0.186 Sum_probs=65.1
Q ss_pred CCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccC
Q 038455 89 FMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSR 167 (170)
Q Consensus 89 ~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~i 167 (170)
.+++..|..+++|++|++++|.++. +|. .+..+++|+.|+|++|+|.+..+..|..+++|+.|+|++|++.+..
T Consensus 102 ~l~~~~~~~l~~L~~L~Ls~N~l~~-lp~----~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 102 VLPSAVFDRLVHLKELFMCCNKLTE-LPR----GIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCS-CCT----TGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred ccChhHhCcchhhCeEeccCCcccc-cCc----ccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 4456668899999999999999995 677 8899999999999999999776678999999999999999998654
No 28
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.32 E-value=8.4e-12 Score=90.88 Aligned_cols=87 Identities=25% Similarity=0.310 Sum_probs=75.1
Q ss_pred CCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChh
Q 038455 66 RRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILP 145 (170)
Q Consensus 66 ~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~ 145 (170)
.+++.|+|+++. + ..+.+..|..+++|++|+|++|.+++..|. .|..+++|+.|+|++|.|+...+.
T Consensus 54 ~~L~~L~Ls~N~-i--------~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~----~f~~l~~L~~L~L~~N~l~~~~~~ 120 (193)
T 2wfh_A 54 KHLTLIDLSNNR-I--------STLSNQSFSNMTQLLTLILSYNRLRCIPPR----TFDGLKSLRLLSLHGNDISVVPEG 120 (193)
T ss_dssp TTCCEEECCSSC-C--------CCCCTTTTTTCTTCCEEECCSSCCCBCCTT----TTTTCTTCCEEECCSSCCCBCCTT
T ss_pred cCCCEEECCCCc-C--------CEeCHhHccCCCCCCEEECCCCccCEeCHH----HhCCCCCCCEEECCCCCCCeeChh
Confidence 467778888777 3 344567799999999999999999998777 899999999999999999976666
Q ss_pred hccCCCCCCEEeCCCCcCcc
Q 038455 146 YLNTLTSLTTLNLSYNKIEG 165 (170)
Q Consensus 146 ~~~~l~~L~~L~L~~N~l~g 165 (170)
.|..+++|+.|+|++|++..
T Consensus 121 ~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 121 AFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp TTTTCTTCCEEECCSSCEEC
T ss_pred hhhcCccccEEEeCCCCeec
Confidence 79999999999999999863
No 29
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.32 E-value=1.3e-11 Score=90.29 Aligned_cols=76 Identities=25% Similarity=0.266 Sum_probs=66.7
Q ss_pred CCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccCC
Q 038455 89 FMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRT 168 (170)
Q Consensus 89 ~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP 168 (170)
.+++..|..+++|++|++++|.+++..+. .+..+++|+.|++++|++++..+..+..+++|+.|++++|++.+..|
T Consensus 90 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 165 (208)
T 2o6s_A 90 SLPNGVFDKLTQLKELALNTNQLQSLPDG----VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 165 (208)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTT
T ss_pred ccCHhHhcCccCCCEEEcCCCcCcccCHh----HhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCC
Confidence 44556688999999999999999987665 68999999999999999997777779999999999999999887766
No 30
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.31 E-value=1.6e-11 Score=92.50 Aligned_cols=70 Identities=29% Similarity=0.400 Sum_probs=40.1
Q ss_pred CCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCc
Q 038455 91 NMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIE 164 (170)
Q Consensus 91 ~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~ 164 (170)
++..|..+++|++|++++|.+++..+. .+..+++|+.|+|++|++.+..+..|..+++|++|+|++|+++
T Consensus 99 ~~~~~~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 168 (251)
T 3m19_A 99 PLGVFDHLTQLDKLYLGGNQLKSLPSG----VFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168 (251)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred ChhHhcccCCCCEEEcCCCcCCCcChh----HhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC
Confidence 344455566666666666666654443 4555666666666666665444445555666666666666655
No 31
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.30 E-value=1.4e-11 Score=87.98 Aligned_cols=85 Identities=24% Similarity=0.179 Sum_probs=70.7
Q ss_pred eEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhc
Q 038455 68 VMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYL 147 (170)
Q Consensus 68 v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~ 147 (170)
.+.++++++. ++.+ +. .+ .++|++|+|++|.|++..|. .|..+++|+.|+|++|+|++..+..|
T Consensus 11 ~~~l~~s~n~-l~~i--------p~-~~--~~~l~~L~L~~N~i~~~~~~----~~~~l~~L~~L~Ls~N~l~~l~~~~f 74 (170)
T 3g39_A 11 GTTVDCSGKS-LASV--------PT-GI--PTTTQVLYLYDNQITKLEPG----VFDRLTQLTRLDLDNNQLTVLPAGVF 74 (170)
T ss_dssp TTEEECTTSC-CSSC--------CS-CC--CTTCSEEECCSSCCCCCCTT----TTTTCTTCSEEECCSSCCCCCCTTTT
T ss_pred CCEEEeCCCC-cCcc--------Cc-cC--CCCCcEEEcCCCcCCccChh----hhcCcccCCEEECCCCCcCccChhhc
Confidence 4578888887 4433 22 22 37899999999999998787 89999999999999999997777778
Q ss_pred cCCCCCCEEeCCCCcCcccCCC
Q 038455 148 NTLTSLTTLNLSYNKIEGSRTK 169 (170)
Q Consensus 148 ~~l~~L~~L~L~~N~l~g~iP~ 169 (170)
..+++|++|+|++|+|++ +|+
T Consensus 75 ~~l~~L~~L~L~~N~l~~-~~~ 95 (170)
T 3g39_A 75 DKLTQLTQLSLNDNQLKS-IPR 95 (170)
T ss_dssp TTCTTCCEEECCSSCCCC-CCT
T ss_pred cCCCCCCEEECCCCccCE-eCH
Confidence 999999999999999995 443
No 32
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.29 E-value=3.7e-12 Score=103.15 Aligned_cols=99 Identities=23% Similarity=0.295 Sum_probs=69.7
Q ss_pred CCeEEeecCCcCccceecCC--------------CC---CCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCC
Q 038455 66 RRVMQLSLNYTRRLKYYDRT--------------SA---SFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQ 128 (170)
Q Consensus 66 ~~v~~L~L~~~~~l~~~~~~--------------~~---~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~ 128 (170)
.+++.|+|+++. ++..... .. ..+.+..|..+++|++|++++|.+++..|. .+..+++
T Consensus 30 ~~l~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~ 104 (455)
T 3v47_A 30 AHVNYVDLSLNS-IAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETG----AFNGLAN 104 (455)
T ss_dssp TTCCEEECCSSC-CCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTT----TTTTCTT
T ss_pred CccCEEEecCCc-cCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChh----hccCccc
Confidence 468889998887 5444221 11 123345677778888888888888776676 7788888
Q ss_pred CCEEECCCCCCCCCChhh--ccCCCCCCEEeCCCCcCcccCCC
Q 038455 129 LKMLNLGFNYVNDSILPY--LNTLTSLTTLNLSYNKIEGSRTK 169 (170)
Q Consensus 129 L~~L~Ls~N~l~g~~p~~--~~~l~~L~~L~L~~N~l~g~iP~ 169 (170)
|++|++++|.+.+.+|.. |..+++|++|++++|.+++..|.
T Consensus 105 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 147 (455)
T 3v47_A 105 LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPA 147 (455)
T ss_dssp CCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCC
T ss_pred CCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcc
Confidence 888888888887655554 77788888888888888765553
No 33
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.29 E-value=4.4e-12 Score=98.72 Aligned_cols=75 Identities=25% Similarity=0.268 Sum_probs=67.9
Q ss_pred CCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccCCC
Q 038455 90 MNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRTK 169 (170)
Q Consensus 90 ~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP~ 169 (170)
..+..|..+++|+.|++++|.+++.+| .+..+++|+.|++++|++.+.+|..+..+++|+.|+|++|+++|.+|.
T Consensus 212 ~~~~~~~~l~~L~~L~L~~N~l~~~~~-----~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 286 (313)
T 1ogq_A 212 DASVLFGSDKNTQKIHLAKNSLAFDLG-----KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp CCGGGCCTTSCCSEEECCSSEECCBGG-----GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred cCCHHHhcCCCCCEEECCCCceeeecC-----cccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence 345678899999999999999998666 578899999999999999999999999999999999999999999986
No 34
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.28 E-value=1e-11 Score=98.47 Aligned_cols=109 Identities=25% Similarity=0.290 Sum_probs=74.4
Q ss_pred CCCCCceEecCC---------CCCeEEeecCCcCccceecCC-----------------CCCCCCCCcCCCCCCCCEEec
Q 038455 53 CDAWEGVMCNAT---------TRRVMQLSLNYTRRLKYYDRT-----------------SASFMNMSLFHPFEELQSLDL 106 (170)
Q Consensus 53 c~~w~gv~c~~~---------~~~v~~L~L~~~~~l~~~~~~-----------------~~~~~~~~~~~~l~~L~~L~l 106 (170)
|. +..+.|... ...++.|+|+++. ++.+... .+..+.+..|..+++|++|+|
T Consensus 18 C~-~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 18 CA-SNILSCSKQQLPNVPQSLPSYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp EE-TTEEECCSSCCSSCCSSCCTTCSEEECCSSC-CCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred EC-CCEEEeCCCCcCccCccCCCCCCEEECCCCC-CCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEEC
Confidence 66 788888541 2346778888776 5444211 122334455777777888888
Q ss_pred cCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccCC
Q 038455 107 SENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRT 168 (170)
Q Consensus 107 s~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP 168 (170)
++|+++...+. .|..+++|+.|+|++|+|.+..|..|..+++|+.|+|++|+|+ .+|
T Consensus 96 s~N~l~~~~~~----~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~ 152 (361)
T 2xot_A 96 SSNHLHTLDEF----LFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFP 152 (361)
T ss_dssp CSSCCCEECTT----TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCC
T ss_pred CCCcCCcCCHH----HhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC-eeC
Confidence 88877775555 6777788888888888887666777888888888888888877 344
No 35
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.28 E-value=2e-11 Score=87.49 Aligned_cols=84 Identities=24% Similarity=0.212 Sum_probs=68.5
Q ss_pred EEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhcc
Q 038455 69 MQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLN 148 (170)
Q Consensus 69 ~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~ 148 (170)
+.++++++. ++.+ +. .+ .++|++|+|++|.+++..|. .|..+++|+.|+|++|+|++..+..|.
T Consensus 15 ~~l~~~~n~-l~~i--------P~-~~--~~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~i~~~~~~ 78 (174)
T 2r9u_A 15 TLVNCQNIR-LASV--------PA-GI--PTDKQRLWLNNNQITKLEPG----VFDHLVNLQQLYFNSNKLTAIPTGVFD 78 (174)
T ss_dssp SEEECCSSC-CSSC--------CS-CC--CTTCSEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred cEEEeCCCC-CCcc--------CC-Cc--CCCCcEEEeCCCCccccCHH----HhcCCcCCCEEECCCCCCCccChhHhC
Confidence 466777776 4332 22 22 27899999999999998787 899999999999999999976666789
Q ss_pred CCCCCCEEeCCCCcCcccCCC
Q 038455 149 TLTSLTTLNLSYNKIEGSRTK 169 (170)
Q Consensus 149 ~l~~L~~L~L~~N~l~g~iP~ 169 (170)
.+++|++|+|++|+|+ .+|+
T Consensus 79 ~l~~L~~L~L~~N~l~-~l~~ 98 (174)
T 2r9u_A 79 KLTQLTQLDLNDNHLK-SIPR 98 (174)
T ss_dssp TCTTCCEEECCSSCCC-CCCT
T ss_pred CcchhhEEECCCCccc-eeCH
Confidence 9999999999999999 4554
No 36
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.28 E-value=9.3e-12 Score=97.74 Aligned_cols=84 Identities=19% Similarity=0.162 Sum_probs=71.8
Q ss_pred EeecCCc-CccceecCCCCCCCCCCcCCCCCCCCEEeccC-CccCccccCccccccCCCCCCCEEECCCCCCCCCChhhc
Q 038455 70 QLSLNYT-RRLKYYDRTSASFMNMSLFHPFEELQSLDLSE-NWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYL 147 (170)
Q Consensus 70 ~L~L~~~-~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~-N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~ 147 (170)
.++.+++ . |+.+ |. +..+++|++|+|++ |.|.+..+. .|..+++|+.|+|++|+|++..|..|
T Consensus 12 ~v~~~~~n~-l~~i---------p~-l~~~~~L~~L~l~~~n~l~~~~~~----~~~~l~~L~~L~l~~N~l~~~~~~~~ 76 (347)
T 2ifg_A 12 GLRCTRDGA-LDSL---------HH-LPGAENLTELYIENQQHLQHLELR----DLRGLGELRNLTIVKSGLRFVAPDAF 76 (347)
T ss_dssp CEECCSSCC-CTTT---------TT-SCSCSCCSEEECCSCSSCCEECGG----GSCSCCCCSEEECCSSCCCEECTTGG
T ss_pred EEEcCCCCC-CCcc---------CC-CCCCCCeeEEEccCCCCCCCcChh----HhccccCCCEEECCCCccceeCHHHh
Confidence 4566666 4 4333 44 88999999999996 999997777 89999999999999999999888899
Q ss_pred cCCCCCCEEeCCCCcCcccCCC
Q 038455 148 NTLTSLTTLNLSYNKIEGSRTK 169 (170)
Q Consensus 148 ~~l~~L~~L~L~~N~l~g~iP~ 169 (170)
..+++|+.|+|++|+|+ .+|.
T Consensus 77 ~~l~~L~~L~l~~N~l~-~~~~ 97 (347)
T 2ifg_A 77 HFTPRLSRLNLSFNALE-SLSW 97 (347)
T ss_dssp GSCSCCCEEECCSSCCS-CCCS
T ss_pred cCCcCCCEEeCCCCccc-eeCH
Confidence 99999999999999999 4554
No 37
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.28 E-value=2.5e-11 Score=92.54 Aligned_cols=75 Identities=29% Similarity=0.296 Sum_probs=51.5
Q ss_pred CCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccCC
Q 038455 90 MNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRT 168 (170)
Q Consensus 90 ~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP 168 (170)
+++..|..+++|+.|++++|++++..+. .+..+++|+.|++++|.+.+..|..+..+++|+.|++++|++.+..|
T Consensus 148 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 222 (272)
T 3rfs_A 148 LPKGVFDKLTNLTELDLSYNQLQSLPEG----VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222 (272)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cCHHHhccCccCCEEECCCCCcCccCHH----HhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc
Confidence 3344466677777777777777765554 56677777777777777776666667777777777777777766555
No 38
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.26 E-value=3.4e-11 Score=92.90 Aligned_cols=76 Identities=25% Similarity=0.239 Sum_probs=56.6
Q ss_pred CCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccCC
Q 038455 89 FMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRT 168 (170)
Q Consensus 89 ~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP 168 (170)
.+++..|..+++|++|++++|++++..+. .|..+++|+.|+|++|+++...+..|..+++|+.|+|++|+++ .+|
T Consensus 114 ~l~~~~~~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip 188 (290)
T 1p9a_G 114 SLPLGALRGLGELQELYLKGNELKTLPPG----LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIP 188 (290)
T ss_dssp CCCSSTTTTCTTCCEEECTTSCCCCCCTT----TTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCC
T ss_pred ccCHHHHcCCCCCCEEECCCCCCCccChh----hcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccC
Confidence 34456677788888888888888775555 6777888888888888888555556677888888888888887 666
Q ss_pred C
Q 038455 169 K 169 (170)
Q Consensus 169 ~ 169 (170)
.
T Consensus 189 ~ 189 (290)
T 1p9a_G 189 K 189 (290)
T ss_dssp T
T ss_pred h
Confidence 4
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.26 E-value=4.4e-12 Score=101.10 Aligned_cols=76 Identities=21% Similarity=0.170 Sum_probs=57.2
Q ss_pred CCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccCC
Q 038455 89 FMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRT 168 (170)
Q Consensus 89 ~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP 168 (170)
.+.+..|..+++|++|++++|.+++..|. .+..+++|+.|++++|.+....+..|..+++|++|++++|.+++..|
T Consensus 83 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~ 158 (390)
T 3o6n_A 83 EIDTYAFAYAHTIQKLYMGFNAIRYLPPH----VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED 158 (390)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCT
T ss_pred ccChhhccCCCCcCEEECCCCCCCcCCHH----HhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccCh
Confidence 34455677888888888888888876666 67888888888888888884444446888888888888888875433
No 40
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.26 E-value=2.4e-11 Score=101.79 Aligned_cols=98 Identities=19% Similarity=0.200 Sum_probs=59.4
Q ss_pred CCeEEeecCCcCccceecC--------------C--CCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCC
Q 038455 66 RRVMQLSLNYTRRLKYYDR--------------T--SASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQL 129 (170)
Q Consensus 66 ~~v~~L~L~~~~~l~~~~~--------------~--~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L 129 (170)
.+++.|+|+++. ++.+.. . .+..+.+..|..+++|++|++++|.+++..|. .|.++++|
T Consensus 32 ~~l~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~----~~~~l~~L 106 (606)
T 3vq2_A 32 SSTKNIDLSFNP-LKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPG----SFSGLTSL 106 (606)
T ss_dssp TTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTT----SSTTCTTC
T ss_pred CCcCEEECCCCC-cCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChh----hcCCcccC
Confidence 467888888876 443321 1 11223344566666666666666666665555 66666666
Q ss_pred CEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcc-cCC
Q 038455 130 KMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEG-SRT 168 (170)
Q Consensus 130 ~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g-~iP 168 (170)
++|++++|.+.+..|..++.+++|++|++++|.+++ .+|
T Consensus 107 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp 146 (606)
T 3vq2_A 107 ENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLP 146 (606)
T ss_dssp CEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCC
T ss_pred CEEEccCCccccccccccCCCCCCCEEeCCCCcccceech
Confidence 666666666665555566666666666666666653 444
No 41
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.25 E-value=1.4e-11 Score=97.60 Aligned_cols=75 Identities=28% Similarity=0.358 Sum_probs=63.4
Q ss_pred CCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhc---cCCCCCCEEeCCCCcCcc
Q 038455 89 FMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYL---NTLTSLTTLNLSYNKIEG 165 (170)
Q Consensus 89 ~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~---~~l~~L~~L~L~~N~l~g 165 (170)
.+.+..|..+++|++|+|++|.+.+..|. .|..+++|+.|+|++|+|.+..+..| ..+++|+.|+|++|+|+
T Consensus 102 ~~~~~~~~~l~~L~~L~L~~N~i~~~~~~----~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~- 176 (361)
T 2xot_A 102 TLDEFLFSDLQALEVLLLYNNHIVVVDRN----AFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK- 176 (361)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCCEECTT----TTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC-
T ss_pred cCCHHHhCCCcCCCEEECCCCcccEECHH----HhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC-
Confidence 34566789999999999999999998787 89999999999999999996544455 67999999999999998
Q ss_pred cCC
Q 038455 166 SRT 168 (170)
Q Consensus 166 ~iP 168 (170)
.+|
T Consensus 177 ~l~ 179 (361)
T 2xot_A 177 KLP 179 (361)
T ss_dssp CCC
T ss_pred ccC
Confidence 555
No 42
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.25 E-value=4.4e-11 Score=91.17 Aligned_cols=75 Identities=23% Similarity=0.359 Sum_probs=54.5
Q ss_pred CCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccCC
Q 038455 90 MNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRT 168 (170)
Q Consensus 90 ~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP 168 (170)
+.+..|..+++|++|++++|.+++..+. .+..+++|+.|++++|++++..+..+..+++|+.|++++|++++..|
T Consensus 124 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 198 (272)
T 3rfs_A 124 LPDGVFDKLTNLTYLNLAHNQLQSLPKG----VFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD 198 (272)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred cCHHHhccCCCCCEEECCCCccCccCHH----HhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCH
Confidence 3444567777778888887777775554 56777888888888888876666667778888888888888875433
No 43
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.24 E-value=3e-11 Score=98.28 Aligned_cols=96 Identities=24% Similarity=0.293 Sum_probs=70.7
Q ss_pred CCceEecCC---------CCCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCC
Q 038455 56 WEGVMCNAT---------TRRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSL 126 (170)
Q Consensus 56 w~gv~c~~~---------~~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l 126 (170)
|..|.|... ...++.|+|+++. ++.+ .+..|..+++|++|+|++|.+++..|. .|..+
T Consensus 56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~-i~~~--------~~~~~~~l~~L~~L~Ls~n~i~~~~~~----~~~~l 122 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENN-IQMI--------QADTFRHLHHLEVLQLGRNSIRQIEVG----AFNGL 122 (452)
T ss_dssp SCEEECCSSCCSSCCSCCCTTCSEEECCSSC-CCEE--------CTTTTTTCTTCCEEECCSSCCCEECTT----TTTTC
T ss_pred CcEEEECCCCcCccCCCCCCCccEEECcCCc-CceE--------CHHHcCCCCCCCEEECCCCccCCcChh----hccCc
Confidence 678888641 2357788888777 4433 456677788888888888888776666 77778
Q ss_pred CCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCc
Q 038455 127 KQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIE 164 (170)
Q Consensus 127 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~ 164 (170)
++|+.|+|++|++++..+..|..+++|++|+|++|+++
T Consensus 123 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 160 (452)
T 3zyi_A 123 ASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE 160 (452)
T ss_dssp TTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCC
T ss_pred ccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcc
Confidence 88888888888887666666777888888888888776
No 44
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.24 E-value=6.9e-12 Score=108.05 Aligned_cols=69 Identities=28% Similarity=0.249 Sum_probs=39.9
Q ss_pred cCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccCC
Q 038455 94 LFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRT 168 (170)
Q Consensus 94 ~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP 168 (170)
.|..|++|++|+|++|.|+ .+|. .|..+++|+.|+|++|.|+ .+|..|+.+++|+.|+|++|+|+|.+|
T Consensus 265 ~~~~l~~L~~L~Ls~N~l~-~lp~----~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p 333 (727)
T 4b8c_D 265 EIKNLSNLRVLDLSHNRLT-SLPA----ELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFL 333 (727)
T ss_dssp GGGGGTTCCEEECTTSCCS-SCCS----SGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHH
T ss_pred hhhCCCCCCEEeCcCCcCC-ccCh----hhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCCh
Confidence 3455555666666666655 2455 5555666666666666655 455556666666666666666655444
No 45
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.24 E-value=4.7e-11 Score=92.05 Aligned_cols=73 Identities=23% Similarity=0.186 Sum_probs=62.6
Q ss_pred CCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccCCC
Q 038455 92 MSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRTK 169 (170)
Q Consensus 92 ~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP~ 169 (170)
+..+..+++|++|++++|++++..|. .|..+++|+.|++++|++.+..+..|..+++|+.|+|++|+++ .+|.
T Consensus 93 ~~~~~~l~~L~~L~l~~N~l~~l~~~----~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~ 165 (290)
T 1p9a_G 93 PLLGQTLPALTVLDVSFNRLTSLPLG----ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPA 165 (290)
T ss_dssp CCCTTTCTTCCEEECCSSCCCCCCSS----TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS-CCCT
T ss_pred chhhccCCCCCEEECCCCcCcccCHH----HHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC-ccCH
Confidence 34577889999999999999987666 7899999999999999999777777889999999999999998 5664
No 46
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.24 E-value=2.5e-11 Score=101.34 Aligned_cols=75 Identities=28% Similarity=0.324 Sum_probs=58.3
Q ss_pred CCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccCCC
Q 038455 91 NMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRTK 169 (170)
Q Consensus 91 ~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP~ 169 (170)
.+..|..+++|++|+|++|++++..|. .|..+++|+.|+|++|+|++..|..|..+++|++|+|++|+|++..|.
T Consensus 486 ~~~~~~~l~~L~~L~Ls~N~L~~l~~~----~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 560 (635)
T 4g8a_A 486 LPDIFTELRNLTFLDLSQCQLEQLSPT----AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 560 (635)
T ss_dssp ECSCCTTCTTCCEEECTTSCCCEECTT----TTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSS
T ss_pred CchhhhhccccCEEECCCCccCCcChH----HHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHH
Confidence 345677788888888888888887776 788888888888888888877777788888888888888888765553
No 47
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.23 E-value=3e-11 Score=83.85 Aligned_cols=87 Identities=24% Similarity=0.232 Sum_probs=71.8
Q ss_pred CCCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCC-C
Q 038455 65 TRRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDS-I 143 (170)
Q Consensus 65 ~~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~-~ 143 (170)
-.+++.|+++++. ++.. ..+..+++|++|++++|.+++.+|. .+..+++|+.|++++|.+++. .
T Consensus 41 l~~L~~L~l~~n~-l~~~----------~~~~~l~~L~~L~Ls~n~i~~~~~~----~~~~l~~L~~L~ls~N~i~~~~~ 105 (149)
T 2je0_A 41 FEELEFLSTINVG-LTSI----------ANLPKLNKLKKLELSDNRVSGGLEV----LAEKCPNLTHLNLSGNKIKDLST 105 (149)
T ss_dssp CTTCCEEECTTSC-CCCC----------TTCCCCTTCCEEECCSSCCCSCTHH----HHHHCTTCCEEECTTSCCCSHHH
T ss_pred cCCCcEEECcCCC-CCCc----------hhhhcCCCCCEEECCCCcccchHHH----HhhhCCCCCEEECCCCcCCChHH
Confidence 3567888888877 3322 5678899999999999999987776 777799999999999999863 3
Q ss_pred hhhccCCCCCCEEeCCCCcCccc
Q 038455 144 LPYLNTLTSLTTLNLSYNKIEGS 166 (170)
Q Consensus 144 p~~~~~l~~L~~L~L~~N~l~g~ 166 (170)
|..+..+++|++|++++|++++.
T Consensus 106 ~~~~~~l~~L~~L~l~~N~l~~~ 128 (149)
T 2je0_A 106 IEPLKKLENLKSLDLFNCEVTNL 128 (149)
T ss_dssp HGGGGGCTTCCEEECTTCGGGGS
T ss_pred HHHHhhCCCCCEEeCcCCcccch
Confidence 47899999999999999999854
No 48
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.23 E-value=4.7e-11 Score=97.41 Aligned_cols=97 Identities=30% Similarity=0.388 Sum_probs=53.2
Q ss_pred CCceEecC---------CCCCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCC
Q 038455 56 WEGVMCNA---------TTRRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSL 126 (170)
Q Consensus 56 w~gv~c~~---------~~~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l 126 (170)
|..|.|.. ....++.|+|+++. ++.+ .+..|..+++|++|+|++|.+++..|. .|..+
T Consensus 13 ~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~-l~~~--------~~~~~~~l~~L~~L~L~~n~i~~~~~~----~~~~l 79 (477)
T 2id5_A 13 DRAVLCHRKRFVAVPEGIPTETRLLDLGKNR-IKTL--------NQDEFASFPHLEELELNENIVSAVEPG----AFNNL 79 (477)
T ss_dssp TTEEECCSCCCSSCCSCCCTTCSEEECCSSC-CCEE--------CTTTTTTCTTCCEEECTTSCCCEECTT----TTTTC
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEECCCCc-cceE--------CHhHccCCCCCCEEECCCCccCEeChh----hhhCC
Confidence 67788853 12356778888776 4443 234455555555555555555554444 55555
Q ss_pred CCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcc
Q 038455 127 KQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEG 165 (170)
Q Consensus 127 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g 165 (170)
++|+.|+|++|++....+..|..+++|++|+|++|++++
T Consensus 80 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~ 118 (477)
T 2id5_A 80 FNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVI 118 (477)
T ss_dssp TTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCE
T ss_pred ccCCEEECCCCcCCccCcccccCCCCCCEEECCCCcccc
Confidence 555555555555553333344555555555555555543
No 49
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.22 E-value=3.8e-11 Score=97.14 Aligned_cols=75 Identities=29% Similarity=0.344 Sum_probs=59.3
Q ss_pred CCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccCC
Q 038455 90 MNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRT 168 (170)
Q Consensus 90 ~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP 168 (170)
+.+..|..+++|++|++++|.+++..|. .+..+++|+.|++++|++++..+..+..+++|+.|++++|++++.+|
T Consensus 338 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 338 IDSRMFENLDKLEVLDLSYNHIRALGDQ----SFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp ECGGGGTTCTTCCEEECCSSCCCEECTT----TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cChhHhcCcccCCEEECCCCcccccChh----hccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 3355677788888888888888877676 78888888888888888886666667888888888888888888776
No 50
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.21 E-value=1.8e-11 Score=84.99 Aligned_cols=86 Identities=33% Similarity=0.298 Sum_probs=67.5
Q ss_pred CCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChh
Q 038455 66 RRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILP 145 (170)
Q Consensus 66 ~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~ 145 (170)
.+++.|+++++. ++. ...+..+..+++|++|++++|.+++. . .+..+++|+.|++++|.+.+.+|.
T Consensus 17 ~~l~~L~l~~n~-l~~-------~~~~~~~~~l~~L~~L~l~~n~l~~~--~----~~~~l~~L~~L~Ls~n~i~~~~~~ 82 (149)
T 2je0_A 17 SDVKELVLDNSR-SNE-------GKLEGLTDEFEELEFLSTINVGLTSI--A----NLPKLNKLKKLELSDNRVSGGLEV 82 (149)
T ss_dssp GGCSEEECTTCB-CBT-------TBCCSCCTTCTTCCEEECTTSCCCCC--T----TCCCCTTCCEEECCSSCCCSCTHH
T ss_pred ccCeEEEccCCc-CCh-------hHHHHHHhhcCCCcEEECcCCCCCCc--h----hhhcCCCCCEEECCCCcccchHHH
Confidence 457788888877 430 01134667888899999999988875 4 788889999999999999877888
Q ss_pred hccCCCCCCEEeCCCCcCcc
Q 038455 146 YLNTLTSLTTLNLSYNKIEG 165 (170)
Q Consensus 146 ~~~~l~~L~~L~L~~N~l~g 165 (170)
.+..+++|++|++++|++++
T Consensus 83 ~~~~l~~L~~L~ls~N~i~~ 102 (149)
T 2je0_A 83 LAEKCPNLTHLNLSGNKIKD 102 (149)
T ss_dssp HHHHCTTCCEEECTTSCCCS
T ss_pred HhhhCCCCCEEECCCCcCCC
Confidence 88888899999999998875
No 51
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.21 E-value=9.9e-11 Score=89.03 Aligned_cols=70 Identities=29% Similarity=0.439 Sum_probs=44.0
Q ss_pred CCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCc
Q 038455 91 NMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIE 164 (170)
Q Consensus 91 ~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~ 164 (170)
++..|..+++|++|++++|.+++..+. .|..+++|+.|++++|.+.+..+..|..+++|+.|+|++|+++
T Consensus 101 ~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 170 (270)
T 2o6q_A 101 PIGVFDQLVNLAELRLDRNQLKSLPPR----VFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK 170 (270)
T ss_dssp CTTTTTTCSSCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CHhHcccccCCCEEECCCCccCeeCHH----HhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCc
Confidence 344456666666666666666665554 5666666666666666666544445666666666666666666
No 52
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.21 E-value=1.7e-11 Score=103.15 Aligned_cols=76 Identities=21% Similarity=0.170 Sum_probs=60.9
Q ss_pred CCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccCC
Q 038455 89 FMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRT 168 (170)
Q Consensus 89 ~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP 168 (170)
.+.+..|..+++|++|+|++|.+++..|. .|+.+++|+.|+|++|.+.+..+..|+.+++|++|+|++|.+++..|
T Consensus 89 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~ 164 (597)
T 3oja_B 89 EIDTYAFAYAHTIQKLYMGFNAIRYLPPH----VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED 164 (597)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCT
T ss_pred CCChHHhcCCCCCCEEECCCCcCCCCCHH----HHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCCh
Confidence 44455788888888888888888887666 77888889999999998886555567888899999999998886554
No 53
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.19 E-value=8.7e-11 Score=95.18 Aligned_cols=96 Identities=25% Similarity=0.301 Sum_probs=66.8
Q ss_pred CCceEecCC---------CCCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCC
Q 038455 56 WEGVMCNAT---------TRRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSL 126 (170)
Q Consensus 56 w~gv~c~~~---------~~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l 126 (170)
|..|.|... ...++.|+|+++. ++.+ .+..|..+++|++|+|++|.++...+. .|..+
T Consensus 45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~-i~~~--------~~~~~~~l~~L~~L~Ls~n~i~~i~~~----~~~~l 111 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGISTNTRLLNLHENQ-IQII--------KVNSFKHLRHLEILQLSRNHIRTIEIG----AFNGL 111 (440)
T ss_dssp SCEEECCSCCCSSCCSCCCTTCSEEECCSCC-CCEE--------CTTTTSSCSSCCEEECCSSCCCEECGG----GGTTC
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEEccCCc-CCee--------CHHHhhCCCCCCEEECCCCcCCccChh----hccCC
Confidence 678888641 2346777777776 4433 445677777777777777777776555 67777
Q ss_pred CCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCc
Q 038455 127 KQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIE 164 (170)
Q Consensus 127 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~ 164 (170)
++|+.|+|++|+++...+..|..+++|+.|+|++|+++
T Consensus 112 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~ 149 (440)
T 3zyj_A 112 ANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE 149 (440)
T ss_dssp SSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCC
T ss_pred ccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCccc
Confidence 77777777777777555556777777777777777776
No 54
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.19 E-value=5.7e-11 Score=84.89 Aligned_cols=86 Identities=21% Similarity=0.195 Sum_probs=70.9
Q ss_pred CeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChh-
Q 038455 67 RVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILP- 145 (170)
Q Consensus 67 ~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~- 145 (170)
.++.|+++++. ++.+ ..|..+++|++|++++|.+++..+. .+..+++|+.|++++|++. .+|.
T Consensus 43 ~L~~L~Ls~N~-l~~~----------~~l~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~L~~N~i~-~~~~~ 106 (176)
T 1a9n_A 43 QFDAIDFSDNE-IRKL----------DGFPLLRRLKTLLVNNNRICRIGEG----LDQALPDLTELILTNNSLV-ELGDL 106 (176)
T ss_dssp CCSEEECCSSC-CCEE----------CCCCCCSSCCEEECCSSCCCEECSC----HHHHCTTCCEEECCSCCCC-CGGGG
T ss_pred CCCEEECCCCC-CCcc----------cccccCCCCCEEECCCCcccccCcc----hhhcCCCCCEEECCCCcCC-cchhh
Confidence 67888888887 4433 4578899999999999999985444 4588999999999999997 5776
Q ss_pred -hccCCCCCCEEeCCCCcCcccCCC
Q 038455 146 -YLNTLTSLTTLNLSYNKIEGSRTK 169 (170)
Q Consensus 146 -~~~~l~~L~~L~L~~N~l~g~iP~ 169 (170)
.+..+++|+.|++++|+++ .+|.
T Consensus 107 ~~l~~l~~L~~L~l~~N~i~-~~~~ 130 (176)
T 1a9n_A 107 DPLASLKSLTYLCILRNPVT-NKKH 130 (176)
T ss_dssp GGGGGCTTCCEEECCSSGGG-GSTT
T ss_pred HhhhcCCCCCEEEecCCCCC-CcHh
Confidence 7899999999999999998 5553
No 55
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.19 E-value=5.6e-11 Score=99.75 Aligned_cols=87 Identities=24% Similarity=0.253 Sum_probs=74.9
Q ss_pred CCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCC-h
Q 038455 66 RRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSI-L 144 (170)
Q Consensus 66 ~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~-p 144 (170)
..++.|+|+++. ++. + |..|+.+++|+.|+|++|.+++ +| .++.+++|+.|+|++|+|++.. |
T Consensus 463 ~~L~~L~Ls~N~-l~~--------l-p~~~~~l~~L~~L~Ls~N~l~~-lp-----~l~~l~~L~~L~Ls~N~l~~~~~p 526 (567)
T 1dce_A 463 LLVTHLDLSHNR-LRA--------L-PPALAALRCLEVLQASDNALEN-VD-----GVANLPRLQELLLCNNRLQQSAAI 526 (567)
T ss_dssp TTCCEEECCSSC-CCC--------C-CGGGGGCTTCCEEECCSSCCCC-CG-----GGTTCSSCCEEECCSSCCCSSSTT
T ss_pred ccCcEeecCccc-ccc--------c-chhhhcCCCCCEEECCCCCCCC-Cc-----ccCCCCCCcEEECCCCCCCCCCCc
Confidence 467888888887 432 2 4578999999999999999998 56 6899999999999999999876 9
Q ss_pred hhccCCCCCCEEeCCCCcCcccCC
Q 038455 145 PYLNTLTSLTTLNLSYNKIEGSRT 168 (170)
Q Consensus 145 ~~~~~l~~L~~L~L~~N~l~g~iP 168 (170)
..++.+++|+.|+|++|++++..|
T Consensus 527 ~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 527 QPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp GGGGGCTTCCEEECTTSGGGGSSS
T ss_pred HHHhcCCCCCEEEecCCcCCCCcc
Confidence 999999999999999999996544
No 56
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.19 E-value=3e-11 Score=85.52 Aligned_cols=86 Identities=29% Similarity=0.257 Sum_probs=69.9
Q ss_pred CCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCC-h
Q 038455 66 RRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSI-L 144 (170)
Q Consensus 66 ~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~-p 144 (170)
..++.|+++++. ++. + ..+..+++|++|++++|.+.+.+|. .+..+++|+.|++++|.+.+.. +
T Consensus 49 ~~L~~L~l~~n~-l~~--------~--~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~ 113 (168)
T 2ell_A 49 VNLEFLSLINVG-LIS--------V--SNLPKLPKLKKLELSENRIFGGLDM----LAEKLPNLTHLNLSGNKLKDISTL 113 (168)
T ss_dssp GGCCEEEEESSC-CCC--------C--SSCCCCSSCCEEEEESCCCCSCCCH----HHHHCTTCCEEECBSSSCCSSGGG
T ss_pred CCCCEEeCcCCC-CCC--------h--hhhccCCCCCEEECcCCcCchHHHH----HHhhCCCCCEEeccCCccCcchhH
Confidence 457777777776 322 2 5678899999999999999987776 6777999999999999998542 2
Q ss_pred hhccCCCCCCEEeCCCCcCccc
Q 038455 145 PYLNTLTSLTTLNLSYNKIEGS 166 (170)
Q Consensus 145 ~~~~~l~~L~~L~L~~N~l~g~ 166 (170)
..+..+++|++|++++|++++.
T Consensus 114 ~~l~~l~~L~~L~l~~N~l~~~ 135 (168)
T 2ell_A 114 EPLKKLECLKSLDLFNCEVTNL 135 (168)
T ss_dssp GGGSSCSCCCEEECCSSGGGTS
T ss_pred HHHhcCCCCCEEEeeCCcCcch
Confidence 7899999999999999999843
No 57
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.19 E-value=4.5e-11 Score=86.91 Aligned_cols=67 Identities=21% Similarity=0.397 Sum_probs=37.7
Q ss_pred CCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCC-CCCCChhhccCCCCCCEEeCCCCcCc
Q 038455 92 MSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNY-VNDSILPYLNTLTSLTTLNLSYNKIE 164 (170)
Q Consensus 92 ~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~-l~g~~p~~~~~l~~L~~L~L~~N~l~ 164 (170)
+..|..+++|++|++++|.+++..|. .+..+++|+.|++++|. +. .+| .+..+++|+.|++++|+++
T Consensus 105 ~~~l~~l~~L~~L~Ls~n~i~~~~~~----~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~ 172 (197)
T 4ezg_A 105 IPNLSGLTSLTLLDISHSAHDDSILT----KINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVH 172 (197)
T ss_dssp SCCCTTCTTCCEEECCSSBCBGGGHH----HHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCC
T ss_pred ChhhcCCCCCCEEEecCCccCcHhHH----HHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCc
Confidence 33455555666666666665554444 55556666666666665 33 343 4555666666666666555
No 58
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.19 E-value=1.4e-10 Score=88.69 Aligned_cols=71 Identities=24% Similarity=0.299 Sum_probs=51.6
Q ss_pred CCCcCCCCCCCCEEeccCCc-cCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcc
Q 038455 91 NMSLFHPFEELQSLDLSENW-FTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEG 165 (170)
Q Consensus 91 ~~~~~~~l~~L~~L~ls~N~-l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g 165 (170)
.+..|..+++|++|++++|. +....|. .+..+++|+.|++++|.+.+..|..+..+++|++|++++|++++
T Consensus 72 ~~~~~~~l~~L~~L~l~~n~~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 143 (285)
T 1ozn_A 72 DAAAFTGLALLEQLDLSDNAQLRSVDPA----TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA 143 (285)
T ss_dssp CTTTTTTCTTCCEEECCSCTTCCCCCTT----TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CHhhcCCccCCCEEeCCCCCCccccCHH----HhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccc
Confidence 34556777777777777776 6665455 67777777888887777776667777777788888888887773
No 59
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.19 E-value=4.1e-11 Score=104.50 Aligned_cols=106 Identities=24% Similarity=0.259 Sum_probs=77.8
Q ss_pred CCceEecCCCCCeEEeecCCcCccceecC--------------CC---CCCCCCCcCCCCCCCCEEeccCCccCccccCc
Q 038455 56 WEGVMCNATTRRVMQLSLNYTRRLKYYDR--------------TS---ASFMNMSLFHPFEELQSLDLSENWFTGIYENR 118 (170)
Q Consensus 56 w~gv~c~~~~~~v~~L~L~~~~~l~~~~~--------------~~---~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~ 118 (170)
|..|.+ ...+++.|+|+++. ++.... .. +..+.+..|.++++|++|+|++|.+.+..|.
T Consensus 16 L~~vP~--lp~~l~~LdLs~N~-i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~- 91 (844)
T 3j0a_A 16 LTQVPQ--VLNTTERLLLSFNY-IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD- 91 (844)
T ss_dssp SSCCCS--SCTTCCEEEEESCC-CCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT-
T ss_pred CCCCCC--CCCCcCEEECCCCc-CCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh-
Confidence 777776 45678888888887 544421 11 1234466678888888888888888887777
Q ss_pred cccccCCCCCCCEEECCCCCCCCCChhh--ccCCCCCCEEeCCCCcCcccCC
Q 038455 119 AYDSFGSLKQLKMLNLGFNYVNDSILPY--LNTLTSLTTLNLSYNKIEGSRT 168 (170)
Q Consensus 119 ~~~~~~~l~~L~~L~Ls~N~l~g~~p~~--~~~l~~L~~L~L~~N~l~g~iP 168 (170)
.|..+++|++|+|++|.+.+.+|.. |..+++|++|+|++|.+++..|
T Consensus 92 ---~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~ 140 (844)
T 3j0a_A 92 ---AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYL 140 (844)
T ss_dssp ---SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCC
T ss_pred ---HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccccc
Confidence 7888888888888888888766654 7888888888888888875443
No 60
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.18 E-value=1.6e-11 Score=105.79 Aligned_cols=88 Identities=18% Similarity=0.189 Sum_probs=75.1
Q ss_pred CCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChh
Q 038455 66 RRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILP 145 (170)
Q Consensus 66 ~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~ 145 (170)
..++.|+|+++. +.. + +..+..+++|++|+|++|.|+ .+|. .|..+++|+.|+|++|+|+ .+|.
T Consensus 224 ~~L~~L~Ls~n~-l~~--------l-~~~~~~l~~L~~L~Ls~N~l~-~lp~----~~~~l~~L~~L~Ls~N~l~-~lp~ 287 (727)
T 4b8c_D 224 QLWHALDLSNLQ-IFN--------I-SANIFKYDFLTRLYLNGNSLT-ELPA----EIKNLSNLRVLDLSHNRLT-SLPA 287 (727)
T ss_dssp CCCCEEECTTSC-CSC--------C-CGGGGGCCSCSCCBCTTSCCS-CCCG----GGGGGTTCCEEECTTSCCS-SCCS
T ss_pred CCCcEEECCCCC-CCC--------C-ChhhcCCCCCCEEEeeCCcCc-ccCh----hhhCCCCCCEEeCcCCcCC-ccCh
Confidence 457788888877 332 2 234558999999999999999 5787 8999999999999999999 7899
Q ss_pred hccCCCCCCEEeCCCCcCcccCCCC
Q 038455 146 YLNTLTSLTTLNLSYNKIEGSRTKQ 170 (170)
Q Consensus 146 ~~~~l~~L~~L~L~~N~l~g~iP~~ 170 (170)
.|+.|++|++|+|++|.|+ .||.+
T Consensus 288 ~~~~l~~L~~L~L~~N~l~-~lp~~ 311 (727)
T 4b8c_D 288 ELGSCFQLKYFYFFDNMVT-TLPWE 311 (727)
T ss_dssp SGGGGTTCSEEECCSSCCC-CCCSS
T ss_pred hhcCCCCCCEEECCCCCCC-ccChh
Confidence 9999999999999999997 88863
No 61
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.17 E-value=1.2e-10 Score=89.74 Aligned_cols=73 Identities=29% Similarity=0.339 Sum_probs=48.9
Q ss_pred CCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccCC
Q 038455 92 MSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRT 168 (170)
Q Consensus 92 ~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP 168 (170)
+..+..+++|++|++++|.+++..|. .+..+++|+.|++++|.+.+..+..+..+++|+.|++++|++++.+|
T Consensus 168 ~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 240 (306)
T 2z66_A 168 PDIFTELRNLTFLDLSQCQLEQLSPT----AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 240 (306)
T ss_dssp CSCCTTCTTCCEEECTTSCCCEECTT----TTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSS
T ss_pred hhHHhhCcCCCEEECCCCCcCCcCHH----HhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCH
Confidence 44566667777777777777665555 66667777777777777765555566667777777777777765544
No 62
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.17 E-value=1.2e-10 Score=89.01 Aligned_cols=66 Identities=29% Similarity=0.290 Sum_probs=35.6
Q ss_pred CCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCc
Q 038455 95 FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIE 164 (170)
Q Consensus 95 ~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~ 164 (170)
|..+++|++|++++|.+++..+. .+..+++|+.|++++|.+.+..|..|..+++|+.|++++|+++
T Consensus 149 ~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 214 (285)
T 1ozn_A 149 FRDLGNLTHLFLHGNRISSVPER----AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 214 (285)
T ss_dssp TTTCTTCCEEECCSSCCCEECTT----TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred hccCCCccEEECCCCcccccCHH----HhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCC
Confidence 44455555555555555543333 3555555555555555555555555555555555555555555
No 63
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.17 E-value=2.5e-11 Score=90.58 Aligned_cols=89 Identities=15% Similarity=0.111 Sum_probs=59.8
Q ss_pred CCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCc-cCccccCccccccCCCCCCCEEECCC-CCCCCCC
Q 038455 66 RRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENW-FTGIYENRAYDSFGSLKQLKMLNLGF-NYVNDSI 143 (170)
Q Consensus 66 ~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~-l~~~~p~~~~~~~~~l~~L~~L~Ls~-N~l~g~~ 143 (170)
..++.|+++++. ++.+ ++..|..+++|++|++++|. ++...+. .|..+++|+.|++++ |++.+..
T Consensus 31 ~~l~~L~l~~n~-l~~i--------~~~~~~~l~~L~~L~l~~n~~l~~i~~~----~f~~l~~L~~L~l~~~n~l~~i~ 97 (239)
T 2xwt_C 31 PSTQTLKLIETH-LRTI--------PSHAFSNLPNISRIYVSIDVTLQQLESH----SFYNLSKVTHIEIRNTRNLTYID 97 (239)
T ss_dssp TTCCEEEEESCC-CSEE--------CTTTTTTCTTCCEEEEECCSSCCEECTT----TEESCTTCCEEEEEEETTCCEEC
T ss_pred CcccEEEEeCCc-ceEE--------CHHHccCCCCCcEEeCCCCCCcceeCHh----HcCCCcCCcEEECCCCCCeeEcC
Confidence 357778887776 4433 34456677777777777775 6665444 566777777777776 7777555
Q ss_pred hhhccCCCCCCEEeCCCCcCcccCC
Q 038455 144 LPYLNTLTSLTTLNLSYNKIEGSRT 168 (170)
Q Consensus 144 p~~~~~l~~L~~L~L~~N~l~g~iP 168 (170)
+..|..+++|+.|++++|++++ +|
T Consensus 98 ~~~f~~l~~L~~L~l~~n~l~~-lp 121 (239)
T 2xwt_C 98 PDALKELPLLKFLGIFNTGLKM-FP 121 (239)
T ss_dssp TTSEECCTTCCEEEEEEECCCS-CC
T ss_pred HHHhCCCCCCCEEeCCCCCCcc-cc
Confidence 5567777777777777777663 55
No 64
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.15 E-value=8e-11 Score=83.28 Aligned_cols=90 Identities=22% Similarity=0.134 Sum_probs=68.3
Q ss_pred CCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCcccc-CccccccCCCCCCCEEECCCCCCCCCCh
Q 038455 66 RRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYE-NRAYDSFGSLKQLKMLNLGFNYVNDSIL 144 (170)
Q Consensus 66 ~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p-~~~~~~~~~l~~L~~L~Ls~N~l~g~~p 144 (170)
.+++.|+++++. ++. ..+..+..+++|++|++++|.+++..+ . .+..+++|+.|++++|.+++..+
T Consensus 71 ~~L~~L~Ls~N~-l~~--------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~----~l~~l~~L~~L~l~~N~l~~~~~ 137 (168)
T 2ell_A 71 PKLKKLELSENR-IFG--------GLDMLAEKLPNLTHLNLSGNKLKDISTLE----PLKKLECLKSLDLFNCEVTNLND 137 (168)
T ss_dssp SSCCEEEEESCC-CCS--------CCCHHHHHCTTCCEEECBSSSCCSSGGGG----GGSSCSCCCEEECCSSGGGTSTT
T ss_pred CCCCEEECcCCc-Cch--------HHHHHHhhCCCCCEEeccCCccCcchhHH----HHhcCCCCCEEEeeCCcCcchHH
Confidence 356677777766 322 234556678899999999999987432 4 78889999999999999986544
Q ss_pred ---hhccCCCCCCEEeCCCCcCcccCCC
Q 038455 145 ---PYLNTLTSLTTLNLSYNKIEGSRTK 169 (170)
Q Consensus 145 ---~~~~~l~~L~~L~L~~N~l~g~iP~ 169 (170)
..+..+++|+.|++++|.+. ++|.
T Consensus 138 ~~~~~~~~l~~L~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 138 YRESVFKLLPQLTYLDGYDREDQ-EAPD 164 (168)
T ss_dssp HHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred HHHHHHHhCccCcEecCCCCChh-hccc
Confidence 47888999999999999887 6665
No 65
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.15 E-value=1.1e-10 Score=97.76 Aligned_cols=78 Identities=26% Similarity=0.408 Sum_probs=67.3
Q ss_pred CCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCC-CChhhccCCCCCCEEeCCCCcCccc
Q 038455 88 SFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVND-SILPYLNTLTSLTTLNLSYNKIEGS 166 (170)
Q Consensus 88 ~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g-~~p~~~~~l~~L~~L~L~~N~l~g~ 166 (170)
..+.+..|..+++|++|++++|.+.+..+. .++.+++|++|++++|.+.+ .+|..|+.+++|++|++++|++++.
T Consensus 93 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 93 QSFSPGSFSGLTSLENLVAVETKLASLESF----PIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp CCCCTTSSTTCTTCCEEECTTSCCCCSSSS----CCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEE
T ss_pred cccChhhcCCcccCCEEEccCCcccccccc----ccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceec
Confidence 344567889999999999999999887667 89999999999999999986 6799999999999999999999865
Q ss_pred CCC
Q 038455 167 RTK 169 (170)
Q Consensus 167 iP~ 169 (170)
.|.
T Consensus 169 ~~~ 171 (606)
T 3vq2_A 169 TVN 171 (606)
T ss_dssp CTT
T ss_pred Chh
Confidence 553
No 66
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.14 E-value=1.6e-10 Score=87.97 Aligned_cols=72 Identities=19% Similarity=0.205 Sum_probs=55.6
Q ss_pred CCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcc
Q 038455 90 MNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEG 165 (170)
Q Consensus 90 ~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g 165 (170)
+.+..|..+++|++|++++|.+++..+. .+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++
T Consensus 67 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 138 (276)
T 2z62_A 67 IEDGAYQSLSHLSTLILTGNPIQSLALG----AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138 (276)
T ss_dssp ECTTTTTTCTTCCEEECTTCCCCEECTT----TTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCC
T ss_pred cCHHHccCCcCCCEEECCCCccCccChh----hhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccce
Confidence 3445677788888888888888776666 77888888888888888886666578888888888888888874
No 67
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.13 E-value=1.9e-10 Score=87.51 Aligned_cols=74 Identities=31% Similarity=0.446 Sum_probs=62.7
Q ss_pred CCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCC-CChhhccCCCCCCEEeCCCCcCccc
Q 038455 89 FMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVND-SILPYLNTLTSLTTLNLSYNKIEGS 166 (170)
Q Consensus 89 ~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g-~~p~~~~~l~~L~~L~L~~N~l~g~ 166 (170)
.+.+..|..+++|++|++++|.+.+..+. .+..+++|+.|++++|.+.+ .+|..+..+++|+.|++++|++++.
T Consensus 90 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~ 164 (276)
T 2z62_A 90 SLALGAFSGLSSLQKLVAVETNLASLENF----PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164 (276)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCCCSTTC----CCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred ccChhhhcCCccccEEECCCCCccccCch----hcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC
Confidence 34456788899999999999999887665 78889999999999999986 3688999999999999999998853
No 68
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.13 E-value=1.7e-10 Score=89.99 Aligned_cols=98 Identities=20% Similarity=0.315 Sum_probs=56.7
Q ss_pred CCCCCceEecCC---------CCCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCcccccc
Q 038455 53 CDAWEGVMCNAT---------TRRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSF 123 (170)
Q Consensus 53 c~~w~gv~c~~~---------~~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~ 123 (170)
|. |..+.|... ...++.|+++++. ++.+ .+..|..+++|++|++++|.+++..|. .+
T Consensus 33 c~-l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~-i~~~--------~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~ 98 (332)
T 2ft3_A 33 CH-LRVVQCSDLGLKAVPKEISPDTTLLDLQNND-ISEL--------RKDDFKGLQHLYALVLVNNKISKIHEK----AF 98 (332)
T ss_dssp EE-TTEEECCSSCCSSCCSCCCTTCCEEECCSSC-CCEE--------CTTTTTTCTTCCEEECCSSCCCEECGG----GS
T ss_pred cc-CCEEECCCCCccccCCCCCCCCeEEECCCCc-CCcc--------CHhHhhCCCCCcEEECCCCccCccCHh----Hh
Confidence 67 999998641 2356778887776 4433 233455555555555555555554444 45
Q ss_pred CCCCCCCEEECCCCC---------------------CCCCChhhccCCCCCCEEeCCCCcCc
Q 038455 124 GSLKQLKMLNLGFNY---------------------VNDSILPYLNTLTSLTTLNLSYNKIE 164 (170)
Q Consensus 124 ~~l~~L~~L~Ls~N~---------------------l~g~~p~~~~~l~~L~~L~L~~N~l~ 164 (170)
..+++|++|++++|+ +.+..+..|..+++|+.|++++|.++
T Consensus 99 ~~l~~L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 160 (332)
T 2ft3_A 99 SPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE 160 (332)
T ss_dssp TTCTTCCEEECCSSCCCSCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCB
T ss_pred hCcCCCCEEECCCCcCCccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccc
Confidence 555555555555554 44333344666666666666666664
No 69
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.13 E-value=1.3e-10 Score=97.30 Aligned_cols=95 Identities=20% Similarity=0.186 Sum_probs=56.0
Q ss_pred CCeEEeecCCcCccceec--------------CCC--CCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCC
Q 038455 66 RRVMQLSLNYTRRLKYYD--------------RTS--ASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQL 129 (170)
Q Consensus 66 ~~v~~L~L~~~~~l~~~~--------------~~~--~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L 129 (170)
..++.|+++++. ++.+. +.. +..+.+..|..+++|++|++++|.+.+..|. .|..+++|
T Consensus 33 ~~l~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L 107 (606)
T 3t6q_A 33 NSTECLEFSFNV-LPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAET----ALSGPKAL 107 (606)
T ss_dssp TTCCEEECTTCC-CSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTT----TTSSCTTC
T ss_pred CcCcEEEccCCc-cCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChh----hhcccccc
Confidence 457788888776 44431 111 1223344556666666666666666655555 56666666
Q ss_pred CEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcc
Q 038455 130 KMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEG 165 (170)
Q Consensus 130 ~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g 165 (170)
++|++++|.+.+..|..++.+++|++|++++|++++
T Consensus 108 ~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~ 143 (606)
T 3t6q_A 108 KHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISS 143 (606)
T ss_dssp CEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCC
T ss_pred cEeeccccCcccCCcchhccCCcccEEECCCCcccc
Confidence 666666666665445556666666666666666664
No 70
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.12 E-value=1.2e-10 Score=97.76 Aligned_cols=85 Identities=22% Similarity=0.264 Sum_probs=72.1
Q ss_pred CeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhh
Q 038455 67 RVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPY 146 (170)
Q Consensus 67 ~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~ 146 (170)
.++.|+|+++. ++.+ +. |..+++|+.|+|++|.++ .+|. .++.+++|+.|+|++|+|++ +| .
T Consensus 442 ~L~~L~Ls~n~-l~~l---------p~-~~~l~~L~~L~Ls~N~l~-~lp~----~~~~l~~L~~L~Ls~N~l~~-lp-~ 503 (567)
T 1dce_A 442 DVRVLHLAHKD-LTVL---------CH-LEQLLLVTHLDLSHNRLR-ALPP----ALAALRCLEVLQASDNALEN-VD-G 503 (567)
T ss_dssp TCSEEECTTSC-CSSC---------CC-GGGGTTCCEEECCSSCCC-CCCG----GGGGCTTCCEEECCSSCCCC-CG-G
T ss_pred CceEEEecCCC-CCCC---------cC-ccccccCcEeecCccccc-ccch----hhhcCCCCCEEECCCCCCCC-Cc-c
Confidence 35667777776 4332 33 889999999999999999 4787 89999999999999999996 77 8
Q ss_pred ccCCCCCCEEeCCCCcCcccC-CC
Q 038455 147 LNTLTSLTTLNLSYNKIEGSR-TK 169 (170)
Q Consensus 147 ~~~l~~L~~L~L~~N~l~g~i-P~ 169 (170)
++.+++|+.|+|++|+|++.+ |.
T Consensus 504 l~~l~~L~~L~Ls~N~l~~~~~p~ 527 (567)
T 1dce_A 504 VANLPRLQELLLCNNRLQQSAAIQ 527 (567)
T ss_dssp GTTCSSCCEEECCSSCCCSSSTTG
T ss_pred cCCCCCCcEEECCCCCCCCCCCcH
Confidence 999999999999999999764 64
No 71
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.12 E-value=2.1e-10 Score=89.37 Aligned_cols=73 Identities=19% Similarity=0.216 Sum_probs=61.4
Q ss_pred CCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccCC
Q 038455 90 MNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRT 168 (170)
Q Consensus 90 ~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP 168 (170)
+.+..|..+++|++|++++|.+++..+. .+..+++|+.|++++|++. .+|..+..+++|++|++++|+++ .+|
T Consensus 207 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~-~~~ 279 (330)
T 1xku_A 207 VDAASLKGLNNLAKLGLSFNSISAVDNG----SLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS-AIG 279 (330)
T ss_dssp ECTGGGTTCTTCCEEECCSSCCCEECTT----TGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC-CCC
T ss_pred cCHHHhcCCCCCCEEECCCCcCceeChh----hccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCC-ccC
Confidence 3456688888999999999999887766 7888899999999999998 78888888999999999999988 444
No 72
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.12 E-value=2.8e-10 Score=95.67 Aligned_cols=73 Identities=22% Similarity=0.260 Sum_probs=52.9
Q ss_pred CCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcc
Q 038455 89 FMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEG 165 (170)
Q Consensus 89 ~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g 165 (170)
.+++..|+.+++|++|+|++|.+++..+. .|..+++|+.|+|++|.+.+..|..|..+++|+.|++++|.+++
T Consensus 113 ~~~~~~~~~l~~L~~L~L~~n~l~~l~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 185 (597)
T 3oja_B 113 YLPPHVFQNVPLLTVLVLERNDLSSLPRG----IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 185 (597)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB
T ss_pred CCCHHHHcCCCCCCEEEeeCCCCCCCCHH----HhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC
Confidence 34455667777777888877777764444 46777777788887777777777777777777888877777764
No 73
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.11 E-value=3.9e-10 Score=89.79 Aligned_cols=71 Identities=23% Similarity=0.250 Sum_probs=46.3
Q ss_pred CCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCc
Q 038455 90 MNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIE 164 (170)
Q Consensus 90 ~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~ 164 (170)
+.+..|..+++|++|++++|.++...+. .|..+++|++|++++|.+.+..|..+..+++|+.|++++|+++
T Consensus 108 ~~~~~~~~l~~L~~L~L~~n~l~~l~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 178 (390)
T 3o6n_A 108 LPPHVFQNVPLLTVLVLERNDLSSLPRG----IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 178 (390)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS
T ss_pred CCHHHhcCCCCCCEEECCCCccCcCCHH----HhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC
Confidence 3445566677777777777776653333 3566677777777777776665666677777777777777665
No 74
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.10 E-value=3.7e-10 Score=91.45 Aligned_cols=66 Identities=29% Similarity=0.368 Sum_probs=45.6
Q ss_pred CCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCc
Q 038455 95 FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIE 164 (170)
Q Consensus 95 ~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~ 164 (170)
+..+++|+.|+|++|.+++..|. .|..+++|+.|++++|++.+..|..|..+++|+.|+|++|+++
T Consensus 203 ~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 268 (440)
T 3zyj_A 203 LTPLIKLDELDLSGNHLSAIRPG----SFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT 268 (440)
T ss_dssp CTTCSSCCEEECTTSCCCEECTT----TTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCC
T ss_pred cCCCcccCEEECCCCccCccChh----hhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCC
Confidence 45556666666666666665555 6667777777777777777666666777777777777777776
No 75
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.10 E-value=2.1e-10 Score=97.28 Aligned_cols=76 Identities=21% Similarity=0.236 Sum_probs=58.6
Q ss_pred CCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccCC
Q 038455 89 FMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRT 168 (170)
Q Consensus 89 ~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP 168 (170)
.+.+..|..+++|++|++++|.++...+. .|..+++|++|++++|++.+..|..|+.+++|++|++++|.+++..|
T Consensus 63 ~~~~~~~~~l~~L~~L~L~~n~l~~l~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 138 (680)
T 1ziw_A 63 KLEPELCQKLPMLKVLNLQHNELSQLSDK----TFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKL 138 (680)
T ss_dssp CCCTTHHHHCTTCCEEECCSSCCCCCCTT----TTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCC
T ss_pred ccCHHHHhcccCcCEEECCCCccCccChh----hhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCc
Confidence 34455667778888888888888775444 58888888888888888887666778888888888888888876554
No 76
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.10 E-value=2e-10 Score=89.63 Aligned_cols=72 Identities=24% Similarity=0.252 Sum_probs=61.2
Q ss_pred CCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcc
Q 038455 89 FMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEG 165 (170)
Q Consensus 89 ~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g 165 (170)
.+.+..|..+++|+.|++++|.+.+..+. .+..+++|+.|++++|++. .+|..+..+++|+.|++++|++++
T Consensus 207 ~~~~~~l~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~ 278 (332)
T 2ft3_A 207 AIELEDLLRYSKLYRLGLGHNQIRMIENG----SLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITK 278 (332)
T ss_dssp CCCTTSSTTCTTCSCCBCCSSCCCCCCTT----GGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCB
T ss_pred ccCHHHhcCCCCCCEEECCCCcCCcCChh----HhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCc
Confidence 34456788889999999999999887776 7888899999999999998 788888899999999999999883
No 77
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.09 E-value=4.3e-10 Score=91.37 Aligned_cols=66 Identities=32% Similarity=0.367 Sum_probs=45.1
Q ss_pred CCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCc
Q 038455 95 FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIE 164 (170)
Q Consensus 95 ~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~ 164 (170)
+..+++|+.|++++|.+++..|. .|..+++|+.|++++|++.+..|..|..+++|+.|+|++|+++
T Consensus 214 ~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 279 (452)
T 3zyi_A 214 LTPLVGLEELEMSGNHFPEIRPG----SFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS 279 (452)
T ss_dssp CTTCTTCCEEECTTSCCSEECGG----GGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred ccccccccEEECcCCcCcccCcc----cccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCC
Confidence 44555666666666666665555 6667777777777777777666666777777777777777776
No 78
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.09 E-value=9.7e-11 Score=92.35 Aligned_cols=100 Identities=21% Similarity=0.310 Sum_probs=80.0
Q ss_pred CCCCCceEecCC---------CCCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCcccccc
Q 038455 53 CDAWEGVMCNAT---------TRRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSF 123 (170)
Q Consensus 53 c~~w~gv~c~~~---------~~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~ 123 (170)
|+ |..|.|... ...++.|+|+++. ++ .+++..|.++++|++|+|++|.+.+.+|.. .|
T Consensus 9 C~-~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~-i~--------~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~---~f 75 (350)
T 4ay9_X 9 CS-NRVFLCQESKVTEIPSDLPRNAIELRFVLTK-LR--------VIQKGAFSGFGDLEKIEISQNDVLEVIEAD---VF 75 (350)
T ss_dssp EE-TTEEEEESTTCCSCCTTCCTTCSEEEEESCC-CS--------EECTTSSTTCTTCCEEEEECCTTCCEECTT---SB
T ss_pred ee-CCEEEecCCCCCccCcCcCCCCCEEEccCCc-CC--------CcCHHHHcCCCCCCEEECcCCCCCCccChh---Hh
Confidence 78 899999641 1356778888777 43 446678999999999999999997767642 57
Q ss_pred CCCCCCCE-EECCCCCCCCCChhhccCCCCCCEEeCCCCcCcc
Q 038455 124 GSLKQLKM-LNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEG 165 (170)
Q Consensus 124 ~~l~~L~~-L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g 165 (170)
.++++|+. +.++.|++....|..|..+++|++|++++|++++
T Consensus 76 ~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~ 118 (350)
T 4ay9_X 76 SNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH 118 (350)
T ss_dssp CSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSS
T ss_pred hcchhhhhhhcccCCcccccCchhhhhcccccccccccccccc
Confidence 88888775 5667799997778889999999999999999984
No 79
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.09 E-value=4e-10 Score=87.77 Aligned_cols=98 Identities=21% Similarity=0.319 Sum_probs=59.9
Q ss_pred CCCCCceEecCC---------CCCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCcccccc
Q 038455 53 CDAWEGVMCNAT---------TRRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSF 123 (170)
Q Consensus 53 c~~w~gv~c~~~---------~~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~ 123 (170)
|. |+.+.|... ...++.|+++++. ++. +.+..|..+++|++|++++|.+++..|. .+
T Consensus 31 c~-l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~-i~~--------~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~ 96 (330)
T 1xku_A 31 CH-LRVVQCSDLGLEKVPKDLPPDTALLDLQNNK-ITE--------IKDGDFKNLKNLHTLILINNKISKISPG----AF 96 (330)
T ss_dssp EE-TTEEECTTSCCCSCCCSCCTTCCEEECCSSC-CCC--------BCTTTTTTCTTCCEEECCSSCCCCBCTT----TT
T ss_pred CC-CeEEEecCCCccccCccCCCCCeEEECCCCc-CCE--------eChhhhccCCCCCEEECCCCcCCeeCHH----Hh
Confidence 67 899998631 2356777777776 333 2344566666666666666666665555 56
Q ss_pred CCCCCCCEEECCCCCCC---------------------CCChhhccCCCCCCEEeCCCCcCc
Q 038455 124 GSLKQLKMLNLGFNYVN---------------------DSILPYLNTLTSLTTLNLSYNKIE 164 (170)
Q Consensus 124 ~~l~~L~~L~Ls~N~l~---------------------g~~p~~~~~l~~L~~L~L~~N~l~ 164 (170)
..+++|++|++++|.+. +..+..|..+++|+.|++++|.++
T Consensus 97 ~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 158 (330)
T 1xku_A 97 APLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK 158 (330)
T ss_dssp TTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCC
T ss_pred cCCCCCCEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCC
Confidence 66666666666666554 333344566666666666666664
No 80
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.08 E-value=3.7e-10 Score=87.04 Aligned_cols=71 Identities=25% Similarity=0.365 Sum_probs=60.5
Q ss_pred CCCcCCCCCCCCEEeccCCccCc-cccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcc
Q 038455 91 NMSLFHPFEELQSLDLSENWFTG-IYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEG 165 (170)
Q Consensus 91 ~~~~~~~l~~L~~L~ls~N~l~~-~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g 165 (170)
.+..|..+++|++|++++|.+.+ .+|. .+..+++|+.|++++|.+.+..|..+..+++|+.|++++|++++
T Consensus 142 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 213 (306)
T 2z66_A 142 FNGIFNGLSSLEVLKMAGNSFQENFLPD----IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 213 (306)
T ss_dssp STTTTTTCTTCCEEECTTCEEGGGEECS----CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSB
T ss_pred chhhcccCcCCCEEECCCCccccccchh----HHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCc
Confidence 34567788889999999998876 5676 78889999999999999987778889999999999999999884
No 81
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.08 E-value=4.9e-10 Score=92.88 Aligned_cols=74 Identities=27% Similarity=0.335 Sum_probs=63.7
Q ss_pred CCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccCCC
Q 038455 92 MSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRTK 169 (170)
Q Consensus 92 ~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP~ 169 (170)
+..|..+++|++|++++|.+++..|. .+..+++|+.|++++|++++..|..|..+++|+.|++++|++++.+|.
T Consensus 463 p~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 463 PDIFTELRNLTFLDLSQCQLEQLSPT----AFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp CSCCTTCTTCCEEECTTSCCCEECTT----TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred hhhhhcccCCCEEECCCCccccCChh----hhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 45678888899999999999887777 888899999999999999887777888999999999999999888774
No 82
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.07 E-value=3.9e-10 Score=95.58 Aligned_cols=67 Identities=22% Similarity=0.162 Sum_probs=59.0
Q ss_pred CCCCCCEEeccCCccCccccCccccccCCCCCCCEEEC------CCCCCCCCChhhccCCCCCCEEeCCCCcCcccCCC
Q 038455 97 PFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNL------GFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRTK 169 (170)
Q Consensus 97 ~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~L------s~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP~ 169 (170)
.+++|+.|++++|++++ +|. .+..+++|+.|+| ++|++.+.+|..+..+++|+.|+|++|++ +.||.
T Consensus 511 ~l~~L~~L~Ls~N~l~~-ip~----~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~ 583 (636)
T 4eco_A 511 TLPYLVGIDLSYNSFSK-FPT----QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNE 583 (636)
T ss_dssp TCTTCCEEECCSSCCSS-CCC----GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCS
T ss_pred cCCCcCEEECCCCCCCC-cCh----hhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCH
Confidence 88899999999999988 787 8888999999999 56778888999999999999999999999 58886
No 83
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.07 E-value=3.3e-10 Score=92.42 Aligned_cols=68 Identities=28% Similarity=0.320 Sum_probs=36.3
Q ss_pred CcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCc
Q 038455 93 SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIE 164 (170)
Q Consensus 93 ~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~ 164 (170)
..|..+++|++|++++|.+.+..|. .|..+++|+.|++++|.+.+..|..|..+++|+.|++++|.++
T Consensus 98 ~~~~~l~~L~~L~Ls~n~i~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 165 (477)
T 2id5_A 98 GVFTGLSNLTKLDISENKIVILLDY----MFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT 165 (477)
T ss_dssp TSSTTCTTCCEEECTTSCCCEECTT----TTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS
T ss_pred ccccCCCCCCEEECCCCccccCChh----HccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc
Confidence 3444555555555555555554444 4555555555555555555444455555555555555555554
No 84
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.07 E-value=1.5e-10 Score=95.25 Aligned_cols=66 Identities=32% Similarity=0.408 Sum_probs=36.4
Q ss_pred CCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCC-CChhhccCCCCCCEEeCCCCcCc
Q 038455 92 MSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVND-SILPYLNTLTSLTTLNLSYNKIE 164 (170)
Q Consensus 92 ~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g-~~p~~~~~l~~L~~L~L~~N~l~ 164 (170)
+..|..+++|++|++++|+++. +|. . .+++|++|++++|.+.+ .+|..|+.+++|++|++++|.++
T Consensus 62 ~~~~~~l~~L~~L~Ls~N~l~~-lp~----~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~ 128 (520)
T 2z7x_B 62 ISVFKFNQELEYLDLSHNKLVK-ISC----H--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE 128 (520)
T ss_dssp GGGGTTCTTCCEEECCSSCCCE-EEC----C--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCC
T ss_pred hHHhhcccCCCEEecCCCceee-cCc----c--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccc
Confidence 3445555555555555555553 443 3 45555566666665554 34555556666666666655554
No 85
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.06 E-value=4.2e-10 Score=93.27 Aligned_cols=76 Identities=18% Similarity=0.190 Sum_probs=57.6
Q ss_pred CCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcc-cCC
Q 038455 90 MNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEG-SRT 168 (170)
Q Consensus 90 ~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g-~iP 168 (170)
+.+..|..+++|++|++++|.+++..|. .|..+++|++|++++|++.+..+..++.+++|++|++++|.+++ .+|
T Consensus 67 i~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp 142 (570)
T 2z63_A 67 IEDGAYQSLSHLSTLILTGNPIQSLALG----AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP 142 (570)
T ss_dssp ECTTTTTTCTTCCEEECTTCCCCEECTT----TTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCC
T ss_pred cCcccccCchhCCEEeCcCCcCCccCHh----hhcCccccccccccccccccCCCccccccccccEEecCCCccceecCh
Confidence 3455677788888888888888776666 78888888888888888875544468888888888888888875 455
Q ss_pred C
Q 038455 169 K 169 (170)
Q Consensus 169 ~ 169 (170)
.
T Consensus 143 ~ 143 (570)
T 2z63_A 143 E 143 (570)
T ss_dssp G
T ss_pred h
Confidence 3
No 86
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.06 E-value=4.3e-10 Score=94.12 Aligned_cols=70 Identities=21% Similarity=0.155 Sum_probs=41.5
Q ss_pred CCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcc
Q 038455 92 MSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEG 165 (170)
Q Consensus 92 ~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g 165 (170)
+..|..+++|++|++++|.+++..|. .+..+++|++|++++|++.+..++.+..+++|++|++++|.+++
T Consensus 98 ~~~~~~l~~L~~L~L~~n~i~~l~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 167 (606)
T 3t6q_A 98 ETALSGPKALKHLFFIQTGISSIDFI----PLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHY 167 (606)
T ss_dssp TTTTSSCTTCCEEECTTSCCSCGGGS----CCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCE
T ss_pred hhhhcccccccEeeccccCcccCCcc----hhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccc
Confidence 44566666666666666666664444 56666666666666666665332333336666666666666654
No 87
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.06 E-value=2.7e-10 Score=81.32 Aligned_cols=85 Identities=21% Similarity=0.187 Sum_probs=68.9
Q ss_pred CCeEEeecCCcCccceecCCCCCCCCCCcCCCCC-CCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCCh
Q 038455 66 RRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFE-ELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSIL 144 (170)
Q Consensus 66 ~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~-~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p 144 (170)
..++.|+++++. ++.+ + .+..+. +|++|++++|.+++. . .+..+++|+.|++++|.+++..|
T Consensus 19 ~~L~~L~l~~n~-l~~i---------~-~~~~~~~~L~~L~Ls~N~l~~~--~----~l~~l~~L~~L~Ls~N~l~~~~~ 81 (176)
T 1a9n_A 19 VRDRELDLRGYK-IPVI---------E-NLGATLDQFDAIDFSDNEIRKL--D----GFPLLRRLKTLLVNNNRICRIGE 81 (176)
T ss_dssp TSCEEEECTTSC-CCSC---------C-CGGGGTTCCSEEECCSSCCCEE--C----CCCCCSSCCEEECCSSCCCEECS
T ss_pred CCceEEEeeCCC-Cchh---------H-HhhhcCCCCCEEECCCCCCCcc--c----ccccCCCCCEEECCCCcccccCc
Confidence 468899999987 4422 2 244444 999999999999985 4 79999999999999999996544
Q ss_pred hhccCCCCCCEEeCCCCcCcccCC
Q 038455 145 PYLNTLTSLTTLNLSYNKIEGSRT 168 (170)
Q Consensus 145 ~~~~~l~~L~~L~L~~N~l~g~iP 168 (170)
..+..+++|++|++++|+++ .+|
T Consensus 82 ~~~~~l~~L~~L~L~~N~i~-~~~ 104 (176)
T 1a9n_A 82 GLDQALPDLTELILTNNSLV-ELG 104 (176)
T ss_dssp CHHHHCTTCCEEECCSCCCC-CGG
T ss_pred chhhcCCCCCEEECCCCcCC-cch
Confidence 55699999999999999996 555
No 88
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.06 E-value=4e-10 Score=81.81 Aligned_cols=87 Identities=23% Similarity=0.322 Sum_probs=65.6
Q ss_pred CeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhh
Q 038455 67 RVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPY 146 (170)
Q Consensus 67 ~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~ 146 (170)
.++.|+++++. ++ ....+..+++|++|++++|.+++..+. .+..+++|+.|++++|.+.+..|..
T Consensus 67 ~L~~L~l~~n~-~~----------~~~~l~~l~~L~~L~l~~n~l~~~~~~----~l~~l~~L~~L~Ls~n~i~~~~~~~ 131 (197)
T 4ezg_A 67 NIKDLTINNIH-AT----------NYNPISGLSNLERLRIMGKDVTSDKIP----NLSGLTSLTLLDISHSAHDDSILTK 131 (197)
T ss_dssp TCSEEEEESCC-CS----------CCGGGTTCTTCCEEEEECTTCBGGGSC----CCTTCTTCCEEECCSSBCBGGGHHH
T ss_pred CCCEEEccCCC-CC----------cchhhhcCCCCCEEEeECCccCcccCh----hhcCCCCCCEEEecCCccCcHhHHH
Confidence 46666666654 21 224677888888888888888876676 7888888888888888888777888
Q ss_pred ccCCCCCCEEeCCCCcCcccCC
Q 038455 147 LNTLTSLTTLNLSYNKIEGSRT 168 (170)
Q Consensus 147 ~~~l~~L~~L~L~~N~l~g~iP 168 (170)
+..+++|+.|++++|++.+.+|
T Consensus 132 l~~l~~L~~L~L~~n~~i~~~~ 153 (197)
T 4ezg_A 132 INTLPKVNSIDLSYNGAITDIM 153 (197)
T ss_dssp HTTCSSCCEEECCSCTBCCCCG
T ss_pred HhhCCCCCEEEccCCCCccccH
Confidence 8888888888888887322444
No 89
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.06 E-value=3.4e-10 Score=94.33 Aligned_cols=83 Identities=27% Similarity=0.334 Sum_probs=50.8
Q ss_pred CCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChh
Q 038455 66 RRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILP 145 (170)
Q Consensus 66 ~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~ 145 (170)
..++.|+++++. ++ .+.+..|..+++|++|++++|.+++..|. .|..+++|++|++++|+++ .+|.
T Consensus 52 ~~L~~L~Ls~N~-i~--------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~-~lp~ 117 (562)
T 3a79_B 52 PRTKALSLSQNS-IS--------ELRMPDISFLSELRVLRLSHNRIRSLDFH----VFLFNQDLEYLDVSHNRLQ-NISC 117 (562)
T ss_dssp TTCCEEECCSSC-CC--------CCCGGGTTTCTTCCEEECCSCCCCEECTT----TTTTCTTCCEEECTTSCCC-EECS
T ss_pred CCcCEEECCCCC-cc--------ccChhhhccCCCccEEECCCCCCCcCCHH----HhCCCCCCCEEECCCCcCC-ccCc
Confidence 456777777776 33 23344566666666666666666665555 5666666666666666665 4444
Q ss_pred hccCCCCCCEEeCCCCcCc
Q 038455 146 YLNTLTSLTTLNLSYNKIE 164 (170)
Q Consensus 146 ~~~~l~~L~~L~L~~N~l~ 164 (170)
. .+++|++|++++|+++
T Consensus 118 ~--~l~~L~~L~Ls~N~l~ 134 (562)
T 3a79_B 118 C--PMASLRHLDLSFNDFD 134 (562)
T ss_dssp C--CCTTCSEEECCSSCCS
T ss_pred c--ccccCCEEECCCCCcc
Confidence 4 5566666666666655
No 90
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.05 E-value=1.2e-10 Score=90.47 Aligned_cols=66 Identities=21% Similarity=0.197 Sum_probs=45.6
Q ss_pred CCCCCCCEEeccCCccCccccCccccccCCC-----CCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCccc
Q 038455 96 HPFEELQSLDLSENWFTGIYENRAYDSFGSL-----KQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGS 166 (170)
Q Consensus 96 ~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l-----~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~ 166 (170)
..+++|++|++++|.+++. |. .+..+ ++|++|++++|++.+..|..|+.+++|++|++++|++.|.
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~----~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 188 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DA----WLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGE 188 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SS----HHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHH
T ss_pred hcCCCccEEEccCCCCcch-hH----HHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcc
Confidence 6677777777777777765 54 55555 6777777777777766666777777777777777776543
No 91
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.05 E-value=2.1e-10 Score=94.84 Aligned_cols=90 Identities=27% Similarity=0.330 Sum_probs=64.5
Q ss_pred CCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCC-CCh
Q 038455 66 RRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVND-SIL 144 (170)
Q Consensus 66 ~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g-~~p 144 (170)
.+++.|+++++. ++.. .+..|..+++|++|++++|.+++..|. .++.+++|++|++++|.+.+ ..|
T Consensus 50 ~~L~~L~Ls~n~-i~~~--------~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~Ls~n~l~~~~~~ 116 (549)
T 2z81_A 50 ANLQVLILKSSR-INTI--------EGDAFYSLGSLEHLDLSDNHLSSLSSS----WFGPLSSLKYLNLMGNPYQTLGVT 116 (549)
T ss_dssp TTCCEEECTTSC-CCEE--------CTTTTTTCTTCCEEECTTSCCCSCCHH----HHTTCTTCCEEECTTCCCSSSCSS
T ss_pred CcccEEECCCCC-cCcc--------ChhhccccccCCEEECCCCccCccCHH----HhccCCCCcEEECCCCcccccchh
Confidence 467777887776 4433 455677788888888888888776554 57778888888888888775 355
Q ss_pred hhccCCCCCCEEeCCCCcCcccCC
Q 038455 145 PYLNTLTSLTTLNLSYNKIEGSRT 168 (170)
Q Consensus 145 ~~~~~l~~L~~L~L~~N~l~g~iP 168 (170)
..++.+++|++|++++|.+.+.+|
T Consensus 117 ~~~~~l~~L~~L~L~~n~~~~~~~ 140 (549)
T 2z81_A 117 SLFPNLTNLQTLRIGNVETFSEIR 140 (549)
T ss_dssp CSCTTCTTCCEEEEEESSSCCEEC
T ss_pred hhhhccCCccEEECCCCccccccC
Confidence 677777777888777777555555
No 92
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.03 E-value=8.2e-10 Score=93.67 Aligned_cols=74 Identities=30% Similarity=0.275 Sum_probs=57.0
Q ss_pred CCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCccc
Q 038455 89 FMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGS 166 (170)
Q Consensus 89 ~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~ 166 (170)
.+++..|..+++|++|++++|.+.+..|. .|..+++|++|++++|.+.+..|..+..+++|++|++++|.+++.
T Consensus 87 ~l~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 160 (680)
T 1ziw_A 87 QLSDKTFAFCTNLTELHLMSNSIQKIKNN----PFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQAL 160 (680)
T ss_dssp CCCTTTTTTCTTCSEEECCSSCCCCCCSC----TTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCB
T ss_pred ccChhhhccCCCCCEEECCCCccCccChh----HccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccccc
Confidence 44455677888888888888888776666 678888888888888888877777778888888888888877754
No 93
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.02 E-value=8.4e-10 Score=90.84 Aligned_cols=90 Identities=20% Similarity=0.142 Sum_probs=58.3
Q ss_pred CCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCc--cccCccccccCCCCCCCEEECCCCCCCCCC
Q 038455 66 RRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTG--IYENRAYDSFGSLKQLKMLNLGFNYVNDSI 143 (170)
Q Consensus 66 ~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~--~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~ 143 (170)
..++.|+++++. +++ ..+..+..+++|++|++++|.+++ .+|. .+..+++|+.|++++|.+.+.+
T Consensus 324 ~~L~~L~Ls~n~-l~~--------~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~----~~~~l~~L~~L~Ls~N~l~~~l 390 (520)
T 2z7x_B 324 SPFLHLDFSNNL-LTD--------TVFENCGHLTELETLILQMNQLKELSKIAE----MTTQMKSLQQLDISQNSVSYDE 390 (520)
T ss_dssp CCCCEEECCSSC-CCT--------TTTTTCCCCSSCCEEECCSSCCCBHHHHHH----HHTTCTTCCEEECCSSCCBCCG
T ss_pred CcccEEEeECCc-cCh--------hhhhhhccCCCCCEEEccCCccCccccchH----HHhhCCCCCEEECCCCcCCccc
Confidence 345566666555 222 224556777777777777777775 3444 5777777777777777777656
Q ss_pred hhh-ccCCCCCCEEeCCCCcCcccCC
Q 038455 144 LPY-LNTLTSLTTLNLSYNKIEGSRT 168 (170)
Q Consensus 144 p~~-~~~l~~L~~L~L~~N~l~g~iP 168 (170)
|.. +..+++|+.|++++|++++.+|
T Consensus 391 ~~~~~~~l~~L~~L~Ls~N~l~~~~~ 416 (520)
T 2z7x_B 391 KKGDCSWTKSLLSLNMSSNILTDTIF 416 (520)
T ss_dssp GGCSCCCCTTCCEEECCSSCCCGGGG
T ss_pred ccchhccCccCCEEECcCCCCCcchh
Confidence 653 6666777777777777765554
No 94
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.01 E-value=8.8e-10 Score=96.66 Aligned_cols=68 Identities=22% Similarity=0.256 Sum_probs=59.0
Q ss_pred CCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCC------CCCCCCChhhccCCCCCCEEeCCCCcCcccCCCC
Q 038455 97 PFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGF------NYVNDSILPYLNTLTSLTTLNLSYNKIEGSRTKQ 170 (170)
Q Consensus 97 ~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~------N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP~~ 170 (170)
.+++|+.|+|++|.+++ +|. .+..+++|+.|+|++ |++.+.+|..|..+++|+.|+|++|++ +.||.+
T Consensus 751 ~l~~L~~L~Ls~N~L~~-lp~----~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~ 824 (876)
T 4ecn_A 751 TLPYLSNMDVSYNCFSS-FPT----QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEK 824 (876)
T ss_dssp TCTTCCEEECCSSCCSS-CCC----GGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC
T ss_pred cCCCcCEEEeCCCCCCc-cch----hhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHh
Confidence 78899999999999988 677 788899999999876 778888999999999999999999999 688863
No 95
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.99 E-value=8.1e-10 Score=96.35 Aligned_cols=80 Identities=25% Similarity=0.267 Sum_probs=67.3
Q ss_pred CCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCCh-hhccCCCCCCEEeCCCCcCccc
Q 038455 88 SFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSIL-PYLNTLTSLTTLNLSYNKIEGS 166 (170)
Q Consensus 88 ~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p-~~~~~l~~L~~L~L~~N~l~g~ 166 (170)
..+.+..|.++++|++|+|++|.+++.+|... .+..+++|++|+|++|.+.+..| ..|+++++|++|+|++|.+++.
T Consensus 86 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~ 163 (844)
T 3j0a_A 86 YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDG--YFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV 163 (844)
T ss_dssp CEECTTSSCSCSSCCCEECTTCCCSSCCSTTC--CCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC
T ss_pred cccCHhHccCCcccCEeeCcCCCCCcccccCc--cccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee
Confidence 34557789999999999999999998666510 38999999999999999987655 5799999999999999999876
Q ss_pred CCC
Q 038455 167 RTK 169 (170)
Q Consensus 167 iP~ 169 (170)
.|.
T Consensus 164 ~~~ 166 (844)
T 3j0a_A 164 CEH 166 (844)
T ss_dssp CSG
T ss_pred CHH
Confidence 553
No 96
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.98 E-value=6.9e-10 Score=86.07 Aligned_cols=23 Identities=35% Similarity=0.400 Sum_probs=13.6
Q ss_pred CCCcCCCCCCCCEEeccCCccCc
Q 038455 91 NMSLFHPFEELQSLDLSENWFTG 113 (170)
Q Consensus 91 ~~~~~~~l~~L~~L~ls~N~l~~ 113 (170)
.+..|..+++|++|++++|++.+
T Consensus 165 ~~~~~~~l~~L~~L~Ls~N~l~~ 187 (312)
T 1wwl_A 165 SCEQVRVFPALSTLDLSDNPELG 187 (312)
T ss_dssp CTTTCCCCSSCCEEECCSCTTCH
T ss_pred hHHHhccCCCCCEEECCCCCcCc
Confidence 34455666666666666666554
No 97
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.95 E-value=2.8e-09 Score=88.73 Aligned_cols=90 Identities=20% Similarity=0.173 Sum_probs=50.6
Q ss_pred CCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCcc--ccCccccccCCCCCCCEEECCCCCCCCCC
Q 038455 66 RRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGI--YENRAYDSFGSLKQLKMLNLGFNYVNDSI 143 (170)
Q Consensus 66 ~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~--~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~ 143 (170)
..++.|+++++. +++ ..+..+..+++|++|++++|++++. +|. .+..+++|+.|++++|++.+.+
T Consensus 353 ~~L~~L~l~~n~-l~~--------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~----~~~~l~~L~~L~l~~N~l~~~~ 419 (562)
T 3a79_B 353 SSFTFLNFTQNV-FTD--------SVFQGCSTLKRLQTLILQRNGLKNFFKVAL----MTKNMSSLETLDVSLNSLNSHA 419 (562)
T ss_dssp CCCCEEECCSSC-CCT--------TTTTTCCSCSSCCEEECCSSCCCBTTHHHH----TTTTCTTCCEEECTTSCCBSCC
T ss_pred CCceEEECCCCc-ccc--------chhhhhcccCCCCEEECCCCCcCCcccchh----hhcCCCCCCEEECCCCcCCCcc
Confidence 456666666665 322 2234556666666666666666652 233 4566666666666666666534
Q ss_pred hh-hccCCCCCCEEeCCCCcCcccCC
Q 038455 144 LP-YLNTLTSLTTLNLSYNKIEGSRT 168 (170)
Q Consensus 144 p~-~~~~l~~L~~L~L~~N~l~g~iP 168 (170)
|. .+..+++|+.|++++|++++.+|
T Consensus 420 ~~~~~~~l~~L~~L~l~~n~l~~~~~ 445 (562)
T 3a79_B 420 YDRTCAWAESILVLNLSSNMLTGSVF 445 (562)
T ss_dssp SSCCCCCCTTCCEEECCSSCCCGGGG
T ss_pred ChhhhcCcccCCEEECCCCCCCcchh
Confidence 43 35555555555555555554443
No 98
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.94 E-value=1.7e-09 Score=89.05 Aligned_cols=65 Identities=23% Similarity=0.269 Sum_probs=44.7
Q ss_pred CCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccCCC
Q 038455 97 PFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRTK 169 (170)
Q Consensus 97 ~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP~ 169 (170)
.+++|+.|+|++|.+++. | .+..+++|+.|+|++|.+++ +|+.+..+++|+.|+|++|.+++ +|.
T Consensus 167 ~l~~L~~L~Ls~N~l~~~-~-----~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~ 231 (487)
T 3oja_A 167 SSDTLEHLNLQYNFIYDV-K-----GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEK 231 (487)
T ss_dssp GTTTCCEEECTTSCCCEE-E-----CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECT
T ss_pred hCCcccEEecCCCccccc-c-----ccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cch
Confidence 556666666666666654 2 23357778888888888875 44457788888888888888874 554
No 99
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.94 E-value=9.9e-10 Score=85.04 Aligned_cols=45 Identities=27% Similarity=0.349 Sum_probs=28.2
Q ss_pred CCCCCCCEEECCCCCCCCCChhhccCC---CCCCEEeCCCCcCcccCCC
Q 038455 124 GSLKQLKMLNLGFNYVNDSILPYLNTL---TSLTTLNLSYNKIEGSRTK 169 (170)
Q Consensus 124 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l---~~L~~L~L~~N~l~g~iP~ 169 (170)
..+++|++|+|++|++.+..|..+..+ ++|++|+|++|+|+ .+|.
T Consensus 221 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~ 268 (310)
T 4glp_A 221 AAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPK 268 (310)
T ss_dssp HHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCS
T ss_pred hcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhh
Confidence 345666666666666666556555554 46677777777666 5554
No 100
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.93 E-value=1.2e-09 Score=85.88 Aligned_cols=83 Identities=24% Similarity=0.303 Sum_probs=56.3
Q ss_pred CCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChh
Q 038455 66 RRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILP 145 (170)
Q Consensus 66 ~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~ 145 (170)
.+++.|+++++. ++. +.+..|..+++|++|++++|.+++..+. .+..+++|++|++++|++.. +|.
T Consensus 76 ~~L~~L~L~~n~-l~~--------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~-l~~ 141 (353)
T 2z80_A 76 VNLQALVLTSNG-INT--------IEEDSFSSLGSLEHLDLSYNYLSNLSSS----WFKPLSSLTFLNLLGNPYKT-LGE 141 (353)
T ss_dssp TTCCEEECTTSC-CCE--------ECTTTTTTCTTCCEEECCSSCCSSCCHH----HHTTCTTCSEEECTTCCCSS-SCS
T ss_pred CCCCEEECCCCc-cCc--------cCHhhcCCCCCCCEEECCCCcCCcCCHh----HhCCCccCCEEECCCCCCcc-cCc
Confidence 356666666665 333 3445677777888888888887764443 47777778888888777774 443
Q ss_pred --hccCCCCCCEEeCCCCc
Q 038455 146 --YLNTLTSLTTLNLSYNK 162 (170)
Q Consensus 146 --~~~~l~~L~~L~L~~N~ 162 (170)
.+..+++|++|++++|.
T Consensus 142 ~~~~~~l~~L~~L~l~~n~ 160 (353)
T 2z80_A 142 TSLFSHLTKLQILRVGNMD 160 (353)
T ss_dssp SCSCTTCTTCCEEEEEESS
T ss_pred hhhhccCCCCcEEECCCCc
Confidence 67777777777777774
No 101
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.93 E-value=3.3e-09 Score=82.91 Aligned_cols=70 Identities=30% Similarity=0.370 Sum_probs=52.5
Q ss_pred CcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccCC
Q 038455 93 SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRT 168 (170)
Q Consensus 93 ~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP 168 (170)
..+..+++|++|++++|.+++. + .+..+++|+.|++++|.+.+..|..+..+++|+.|++++|++++..|
T Consensus 259 ~~~~~l~~L~~L~l~~n~l~~~-~-----~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 259 NAVKDLTKLKMLNVGSNQISDI-S-----VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp GGGTTCTTCCEEECCSSCCCCC-G-----GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred hhHhcCCCcCEEEccCCccCCC-h-----hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC
Confidence 3466777777777777777763 3 56777888888888888887777778888888888888888875443
No 102
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.92 E-value=1.7e-09 Score=83.67 Aligned_cols=70 Identities=21% Similarity=0.015 Sum_probs=45.3
Q ss_pred CCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcc
Q 038455 96 HPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEG 165 (170)
Q Consensus 96 ~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g 165 (170)
..+++|++|++++|.+.+..+......+..+++|+.|++++|.+.+..|..|+.+++|++|+|++|++.+
T Consensus 114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 183 (310)
T 4glp_A 114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLG 183 (310)
T ss_dssp CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCH
T ss_pred ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCcc
Confidence 6677777777777777664431000134456777777777777776666677777777777777777643
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.92 E-value=5.4e-09 Score=80.46 Aligned_cols=62 Identities=35% Similarity=0.420 Sum_probs=34.4
Q ss_pred CCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCc
Q 038455 95 FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIE 164 (170)
Q Consensus 95 ~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~ 164 (170)
+..+++|+.|++++|.+++. . .+..+++|+.|++++|++.+..| +..+++|+.|++++|+++
T Consensus 130 l~~l~~L~~L~l~~n~l~~~--~----~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 130 LVHLPQLESLYLGNNKITDI--T----VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp GGGCTTCCEEECCSSCCCCC--G----GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred hcCCCCCCEEEccCCcCCcc--h----hhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC
Confidence 44445555555555555442 2 45556666666666666654333 556666666666666655
No 104
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.90 E-value=2.4e-09 Score=83.13 Aligned_cols=61 Identities=26% Similarity=0.256 Sum_probs=33.2
Q ss_pred CCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCc
Q 038455 98 FEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIE 164 (170)
Q Consensus 98 l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~ 164 (170)
+++|++|++++|.+++ +|. .+..+++|+.|++++|++. .+|..+..+++|+.|++++|+++
T Consensus 190 l~~L~~L~Ls~N~l~~-l~~----~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 190 FAKLKTLDLSSNKLAF-MGP----EFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp CTTCCEEECCSSCCCE-ECG----GGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred cccCCEEECCCCcCCc-chh----hhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCcc
Confidence 4555555555555554 233 4555555555555555555 34555555555566666555554
No 105
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.89 E-value=3.3e-09 Score=82.88 Aligned_cols=66 Identities=24% Similarity=0.313 Sum_probs=57.8
Q ss_pred CcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCc
Q 038455 93 SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIE 164 (170)
Q Consensus 93 ~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~ 164 (170)
+.+..+++|+.|++++|.+++..|. .+..+++|+.|++++|.+++..| +..+++|+.|++++|.|+
T Consensus 281 ~~~~~l~~L~~L~L~~n~l~~~~~~----~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 281 SVLNNLSQLNSLFLNNNQLGNEDME----VIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp GGGGGCTTCSEEECCSSCCCGGGHH----HHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred hhhcCCCCCCEEECcCCcCCCcChh----HhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 4578899999999999999988777 89999999999999999997666 889999999999999986
No 106
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.89 E-value=8e-09 Score=79.47 Aligned_cols=65 Identities=37% Similarity=0.464 Sum_probs=47.8
Q ss_pred CcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcc
Q 038455 93 SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEG 165 (170)
Q Consensus 93 ~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g 165 (170)
+.+..+++|++|++++|.+++. + .+..+++|+.|++++|++.+. ..+..+++|+.|++++|++++
T Consensus 106 ~~l~~l~~L~~L~L~~n~i~~~-~-----~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~ 170 (291)
T 1h6t_A 106 SSLKDLKKLKSLSLEHNGISDI-N-----GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD 170 (291)
T ss_dssp GGGTTCTTCCEEECTTSCCCCC-G-----GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC
T ss_pred hhhccCCCCCEEECCCCcCCCC-h-----hhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCcccc
Confidence 3466777777777777777663 3 567778888888888888754 567778888888888888774
No 107
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.87 E-value=3.7e-09 Score=78.69 Aligned_cols=77 Identities=16% Similarity=0.188 Sum_probs=60.0
Q ss_pred CCCCCCCcCCCCCCCC-EEeccCCccCccccCccccccCCCCCCCEEECCCCC-CCCCChhhccCC-CCCCEEeCCCCcC
Q 038455 87 ASFMNMSLFHPFEELQ-SLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNY-VNDSILPYLNTL-TSLTTLNLSYNKI 163 (170)
Q Consensus 87 ~~~~~~~~~~~l~~L~-~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~-l~g~~p~~~~~l-~~L~~L~L~~N~l 163 (170)
+..+++..|..+++|+ .|++++|.++. +|.. .+.. ++|+.|++++|+ +.+..+..|..+ ++|+.|++++|++
T Consensus 143 l~~i~~~~~~~l~~L~~~L~l~~n~l~~-i~~~---~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l 217 (239)
T 2xwt_C 143 MTSIPVNAFQGLCNETLTLKLYNNGFTS-VQGY---AFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSV 217 (239)
T ss_dssp CCEECTTTTTTTBSSEEEEECCSCCCCE-ECTT---TTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCC
T ss_pred hhhcCcccccchhcceeEEEcCCCCCcc-cCHh---hcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcc
Confidence 3344556688899999 99999999985 5541 3444 889999999995 886666778888 9999999999999
Q ss_pred cccCCC
Q 038455 164 EGSRTK 169 (170)
Q Consensus 164 ~g~iP~ 169 (170)
+ .+|.
T Consensus 218 ~-~l~~ 222 (239)
T 2xwt_C 218 T-ALPS 222 (239)
T ss_dssp C-CCCC
T ss_pred c-cCCh
Confidence 8 5665
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.85 E-value=1.4e-08 Score=85.91 Aligned_cols=62 Identities=35% Similarity=0.420 Sum_probs=32.8
Q ss_pred CCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCc
Q 038455 95 FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIE 164 (170)
Q Consensus 95 ~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~ 164 (170)
+..|++|+.|+|++|.+++. . .+..+++|+.|+|++|.|.+..| +..+++|+.|+|++|+|+
T Consensus 127 l~~l~~L~~L~Ls~N~l~~l--~----~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 127 LVHLPQLESLYLGNNKITDI--T----VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 188 (605)
T ss_dssp GGGCTTCSEEECCSSCCCCC--G----GGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred ccCCCccCEEECCCCccCCc--h----hhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCC
Confidence 33444444444444444442 1 45555556666666666554433 555666666666666555
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.85 E-value=1.2e-08 Score=86.29 Aligned_cols=66 Identities=35% Similarity=0.424 Sum_probs=47.1
Q ss_pred CcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCccc
Q 038455 93 SLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGS 166 (170)
Q Consensus 93 ~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~ 166 (170)
+.+..+++|+.|+|++|.+.+ ++ .+..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|.+++.
T Consensus 103 ~~l~~l~~L~~L~Ls~N~l~~-l~-----~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~ 168 (605)
T 1m9s_A 103 SSLKDLKKLKSLSLEHNGISD-IN-----GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI 168 (605)
T ss_dssp TTSTTCTTCCEEECTTSCCCC-CG-----GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCC
T ss_pred hhhccCCCCCEEEecCCCCCC-Cc-----cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCc
Confidence 456777777777777777776 33 567777777777777777754 5677777777777777777754
No 110
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.83 E-value=2e-08 Score=77.78 Aligned_cols=39 Identities=41% Similarity=0.595 Sum_probs=17.0
Q ss_pred CCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCc
Q 038455 124 GSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIE 164 (170)
Q Consensus 124 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~ 164 (170)
..+++|+.|++++|.+.+ ++. +..+++|+.|++++|+++
T Consensus 148 ~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 148 AGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKIS 186 (308)
T ss_dssp GGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCC
T ss_pred cCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccC
Confidence 334444444444444442 222 444444444444444444
No 111
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.82 E-value=2.2e-08 Score=77.51 Aligned_cols=62 Identities=23% Similarity=0.389 Sum_probs=29.5
Q ss_pred CCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCc
Q 038455 95 FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIE 164 (170)
Q Consensus 95 ~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~ 164 (170)
+..+++|++|++++|.+++ ++ .+..+++|+.|++++|.+.+..+ +..+++|+.|++++|+++
T Consensus 103 ~~~l~~L~~L~l~~n~l~~-~~-----~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~ 164 (308)
T 1h6u_A 103 IAGLQSIKTLDLTSTQITD-VT-----PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS 164 (308)
T ss_dssp GTTCTTCCEEECTTSCCCC-CG-----GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred hcCCCCCCEEECCCCCCCC-ch-----hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCC
Confidence 4445555555555555544 22 24444555555555555543222 444555555555555444
No 112
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.82 E-value=3.6e-09 Score=88.92 Aligned_cols=102 Identities=18% Similarity=0.164 Sum_probs=52.8
Q ss_pred CCCCCCCCCCCCCCCC-----CCCCce-EecCCCCCeEEeecCCcCccceec-----------CCCC--CCCCCCcCCCC
Q 038455 38 LPSWVGEDDGMPSDCC-----DAWEGV-MCNATTRRVMQLSLNYTRRLKYYD-----------RTSA--SFMNMSLFHPF 98 (170)
Q Consensus 38 l~~W~~~~~~~~~~~c-----~~w~gv-~c~~~~~~v~~L~L~~~~~l~~~~-----------~~~~--~~~~~~~~~~l 98 (170)
+.+|.. ...+| . |.++ .|. ..+++.|+++++. ++++. +..+ ..++ ..+
T Consensus 33 l~~W~~-----~~~~~~~~~~~-~~~l~~C~--~~~L~~L~Ls~n~-L~~lp~~l~~~L~~L~Ls~N~l~~ip----~~l 99 (571)
T 3cvr_A 33 WDKWEK-----QALPGENRNEA-VSLLKECL--INQFSELQLNRLN-LSSLPDNLPPQITVLEITQNALISLP----ELP 99 (571)
T ss_dssp HHHHHT-----TCCTTCCHHHH-HHHHHHHH--HTTCSEEECCSSC-CSCCCSCCCTTCSEEECCSSCCSCCC----CCC
T ss_pred HHHHhc-----cCCccccccch-hhhccccc--cCCccEEEeCCCC-CCccCHhHcCCCCEEECcCCCCcccc----ccc
Confidence 345655 35667 5 8888 674 3467888888776 54421 1111 1111 234
Q ss_pred CCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCc
Q 038455 99 EELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIE 164 (170)
Q Consensus 99 ~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~ 164 (170)
++|++|++++|.|++ +|. +.. +|+.|++++|+|++ +|. .+++|+.|+|++|+|+
T Consensus 100 ~~L~~L~Ls~N~l~~-ip~-----l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~ 153 (571)
T 3cvr_A 100 ASLEYLDACDNRLST-LPE-----LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLT 153 (571)
T ss_dssp TTCCEEECCSSCCSC-CCC-----CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS
T ss_pred CCCCEEEccCCCCCC-cch-----hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccC
Confidence 566666666666665 442 211 45555555555553 333 3444555555555444
No 113
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.78 E-value=6.5e-09 Score=85.54 Aligned_cols=66 Identities=29% Similarity=0.248 Sum_probs=34.4
Q ss_pred cCCCCCCCCEEeccCCccCccccCccccccC-CCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcc
Q 038455 94 LFHPFEELQSLDLSENWFTGIYENRAYDSFG-SLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEG 165 (170)
Q Consensus 94 ~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~-~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g 165 (170)
.|..+++|+.|++++|.+++.+|. .+. .+++|+.|+|++|.|++. |. +..+++|+.|+|++|.+++
T Consensus 139 ~~~~l~~L~~L~Ls~N~l~~~~~~----~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~ 205 (487)
T 3oja_A 139 DEGCRSRVQYLDLKLNEIDTVNFA----ELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF 205 (487)
T ss_dssp CGGGGSSEEEEECTTSCCCEEEGG----GGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE
T ss_pred hhcCCCCCCEEECCCCCCCCcChH----HHhhhCCcccEEecCCCccccc-cc-cccCCCCCEEECCCCCCCC
Confidence 344455555555555555554444 343 455555555555555533 21 2235566666666666654
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.78 E-value=9e-09 Score=78.12 Aligned_cols=62 Identities=23% Similarity=0.311 Sum_probs=29.8
Q ss_pred CCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCc
Q 038455 95 FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIE 164 (170)
Q Consensus 95 ~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~ 164 (170)
+..+++|+.|++++|++++. + .+..+++|+.|++++|++.+. ..+..+++|+.|++++|+++
T Consensus 124 l~~l~~L~~L~Ls~N~i~~~-~-----~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 124 LIHLKNLEILSIRNNKLKSI-V-----MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp GTTCTTCCEEECTTSCCCBC-G-----GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEE
T ss_pred hcCcccccEEECCCCcCCCC-h-----HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCccc
Confidence 44444555555555554442 2 344445555555555555433 33444555555555555544
No 115
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.77 E-value=1.3e-08 Score=78.94 Aligned_cols=65 Identities=23% Similarity=0.281 Sum_probs=45.5
Q ss_pred CCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccCCC
Q 038455 97 PFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRTK 169 (170)
Q Consensus 97 ~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP~ 169 (170)
.+++|++|++++|.+++. + ....+++|+.|++++|++.+ +|+.+..+++|+.|++++|+++ .+|.
T Consensus 167 ~l~~L~~L~L~~N~l~~~-~-----~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~ 231 (317)
T 3o53_A 167 SSDTLEHLNLQYNFIYDV-K-----GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEK 231 (317)
T ss_dssp GTTTCCEEECTTSCCCEE-E-----CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECT
T ss_pred ccCcCCEEECCCCcCccc-c-----cccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhh
Confidence 456666666666666653 3 23347788888888888874 4555788888888888888887 4554
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.76 E-value=3.4e-08 Score=74.90 Aligned_cols=59 Identities=29% Similarity=0.331 Sum_probs=36.0
Q ss_pred CCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcc
Q 038455 99 EELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEG 165 (170)
Q Consensus 99 ~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g 165 (170)
++|+.|++++|.+++ ++ .+..+++|+.|++++|++++. | .+..+++|+.|++++|++++
T Consensus 106 ~~L~~L~L~~N~l~~-~~-----~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 106 ACLSRLFLDNNELRD-TD-----SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp SSCCEEECCSSCCSB-SG-----GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCB
T ss_pred CcccEEEccCCccCC-Ch-----hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcc
Confidence 445555555555544 22 466667777777777777643 3 56667777777777777664
No 117
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.68 E-value=7e-08 Score=78.60 Aligned_cols=63 Identities=25% Similarity=0.349 Sum_probs=37.5
Q ss_pred CCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcc
Q 038455 95 FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEG 165 (170)
Q Consensus 95 ~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g 165 (170)
+..+++|+.|++++|.+++. + .+..+++|+.|++++|++.+..| +..+++|+.|++++|++++
T Consensus 327 ~~~l~~L~~L~l~~n~l~~~-~-----~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 327 VSSLTKLQRLFFYNNKVSDV-S-----SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCC-G-----GGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred hccCccCCEeECCCCccCCc-h-----hhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 34445555555555555442 2 45666666666666666665554 6666667777777776664
No 118
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.68 E-value=2.3e-08 Score=76.41 Aligned_cols=67 Identities=27% Similarity=0.249 Sum_probs=55.1
Q ss_pred CCCCCCEEeccCCccCc--cccCccccccCCCCCCCEEECCCCCCCCCChhhccCCC--CCCEEeCCCCcCcccCCC
Q 038455 97 PFEELQSLDLSENWFTG--IYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLT--SLTTLNLSYNKIEGSRTK 169 (170)
Q Consensus 97 ~l~~L~~L~ls~N~l~~--~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~--~L~~L~L~~N~l~g~iP~ 169 (170)
.+++|+.|+|++|+|++ .+|. .+..+++|+.|+|++|+|.+. ..+..+. +|+.|+|++|++++.+|.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~----~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~ 238 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSS----IVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRD 238 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTT----HHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSS
T ss_pred hCCCCCEEECCCCCCCCCccchh----HHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCc
Confidence 47899999999999998 3445 667899999999999999964 3344444 999999999999987763
No 119
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.66 E-value=1.1e-07 Score=77.51 Aligned_cols=66 Identities=27% Similarity=0.256 Sum_probs=40.7
Q ss_pred CCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccCC
Q 038455 95 FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRT 168 (170)
Q Consensus 95 ~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP 168 (170)
+..+++|+.|++++|.+++.. .+..+++|+.|++++|.+.+. ..+..+++|+.|++++|++++.+|
T Consensus 305 ~~~l~~L~~L~L~~n~l~~~~------~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~ 370 (466)
T 1o6v_A 305 ISNLKNLTYLTLYFNNISDIS------PVSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP 370 (466)
T ss_dssp GGGCTTCSEEECCSSCCSCCG------GGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG
T ss_pred hcCCCCCCEEECcCCcCCCch------hhccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch
Confidence 444555555555555555532 244566666677766666643 356677777777777777776544
No 120
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.65 E-value=9.3e-08 Score=78.08 Aligned_cols=61 Identities=23% Similarity=0.236 Sum_probs=49.7
Q ss_pred CCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcc
Q 038455 95 FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEG 165 (170)
Q Consensus 95 ~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g 165 (170)
+..+++|++|++++|.+++. .++.+++|++|++++|++.+ +| ++.+++|++|++++|++++
T Consensus 81 ~~~l~~L~~L~Ls~N~l~~~-------~~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~ 141 (457)
T 3bz5_A 81 LSQNTNLTYLACDSNKLTNL-------DVTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTE 141 (457)
T ss_dssp CTTCTTCSEEECCSSCCSCC-------CCTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSC
T ss_pred cccCCCCCEEECcCCCCcee-------ecCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccce
Confidence 67788888888888888773 36678888899998888886 44 7888889999999888875
No 121
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.63 E-value=5.6e-08 Score=82.42 Aligned_cols=63 Identities=27% Similarity=0.157 Sum_probs=51.3
Q ss_pred CCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccCC
Q 038455 97 PFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRT 168 (170)
Q Consensus 97 ~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP 168 (170)
.+++|++|++++|.|+. +|. .+++|+.|+|++|+|+ .+|..+..+++|+.|+|++|++++.+|
T Consensus 239 ~l~~L~~L~Ls~N~L~~-lp~-------~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~ 301 (622)
T 3g06_A 239 LPSELKELMVSGNRLTS-LPM-------LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL 301 (622)
T ss_dssp CCTTCCEEECCSSCCSC-CCC-------CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHH
T ss_pred CCCcCcEEECCCCCCCc-CCc-------ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCH
Confidence 45677777777777775 442 4678999999999999 788889999999999999999987654
No 122
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.62 E-value=2.4e-08 Score=77.53 Aligned_cols=66 Identities=23% Similarity=0.179 Sum_probs=43.0
Q ss_pred CCCCCCCCEEeccCCccCcc-ccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCC-cCc
Q 038455 95 FHPFEELQSLDLSENWFTGI-YENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYN-KIE 164 (170)
Q Consensus 95 ~~~l~~L~~L~ls~N~l~~~-~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N-~l~ 164 (170)
+..+++|++|++++|.+++. +|. .+..+++|+.|++++|.+.+..|..+..+++|++|++++| .++
T Consensus 89 ~~~~~~L~~L~L~~~~l~~~~~~~----~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~ 156 (336)
T 2ast_B 89 HFSPFRVQHMDLSNSVIEVSTLHG----ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFS 156 (336)
T ss_dssp CCCCBCCCEEECTTCEECHHHHHH----HHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCC
T ss_pred hccCCCCCEEEccCCCcCHHHHHH----HHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCC
Confidence 34566777777777776654 554 5666667777777777666666666666667777777666 454
No 123
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.61 E-value=3.6e-10 Score=82.16 Aligned_cols=66 Identities=21% Similarity=0.176 Sum_probs=41.0
Q ss_pred CCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCCh-hhccCCCCCCEEeCCCCcCcccCC
Q 038455 97 PFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSIL-PYLNTLTSLTTLNLSYNKIEGSRT 168 (170)
Q Consensus 97 ~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p-~~~~~l~~L~~L~L~~N~l~g~iP 168 (170)
.+++|++|++++|.+++ +| .+..+++|+.|++++|++.+..+ ..+..+++|++|++++|++++.+|
T Consensus 91 ~~~~L~~L~L~~N~l~~-l~-----~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 157 (198)
T 1ds9_A 91 VADTLEELWISYNQIAS-LS-----GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157 (198)
T ss_dssp HHHHCSEEEEEEEECCC-HH-----HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred cCCcCCEEECcCCcCCc-CC-----ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence 34455555555555554 23 35566677777777777763222 367777888888888887765543
No 124
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.60 E-value=4.6e-08 Score=79.82 Aligned_cols=64 Identities=20% Similarity=0.236 Sum_probs=29.8
Q ss_pred CCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCC--CChhhccCC-------------CCCCEEeCCCCc
Q 038455 98 FEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVND--SILPYLNTL-------------TSLTTLNLSYNK 162 (170)
Q Consensus 98 l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g--~~p~~~~~l-------------~~L~~L~L~~N~ 162 (170)
+++|++|++++|.++. +| . .+++|+.|++++|++.+ .+|..+..+ ++|+.|++++|+
T Consensus 336 ~~~L~~L~L~~N~l~~-lp-----~--~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~ 407 (454)
T 1jl5_A 336 PPRLERLIASFNHLAE-VP-----E--LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP 407 (454)
T ss_dssp CTTCCEEECCSSCCSC-CC-----C--CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC---------------------
T ss_pred CCcCCEEECCCCcccc-cc-----c--hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCc
Confidence 3566666666666664 44 2 35677778888887777 667776666 677888888887
Q ss_pred Ccc--cCCC
Q 038455 163 IEG--SRTK 169 (170)
Q Consensus 163 l~g--~iP~ 169 (170)
++| .+|.
T Consensus 408 l~~~~~iP~ 416 (454)
T 1jl5_A 408 LREFPDIPE 416 (454)
T ss_dssp ---------
T ss_pred CCccccchh
Confidence 776 6664
No 125
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.60 E-value=1.9e-07 Score=76.19 Aligned_cols=61 Identities=25% Similarity=0.264 Sum_probs=37.7
Q ss_pred CCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcc
Q 038455 95 FHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEG 165 (170)
Q Consensus 95 ~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g 165 (170)
+..+++|+.|++++|.+++. .+..+++|+.|++++|++++ +| +..+++|+.|++++|++++
T Consensus 187 l~~l~~L~~L~l~~N~l~~~-------~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~ 247 (457)
T 3bz5_A 187 VSQNKLLNRLNCDTNNITKL-------DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTE 247 (457)
T ss_dssp CTTCTTCCEEECCSSCCSCC-------CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC
T ss_pred cccCCCCCEEECcCCcCCee-------ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCC
Confidence 44555555555555555542 25556667777777777765 44 6666677777777776664
No 126
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.59 E-value=2e-07 Score=76.04 Aligned_cols=64 Identities=17% Similarity=0.204 Sum_probs=50.3
Q ss_pred cCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccCC
Q 038455 94 LFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRT 168 (170)
Q Consensus 94 ~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP 168 (170)
.|..+++|++|++++|++++ +|. .+ .+|++|++++|++.+ +| .++.+++|+.|++++|++++ +|
T Consensus 148 ~~~~l~~L~~L~l~~N~l~~-lp~----~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~ 211 (454)
T 1jl5_A 148 ELQNSSFLKIIDVDNNSLKK-LPD----LP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LP 211 (454)
T ss_dssp CCTTCTTCCEEECCSSCCSC-CCC----CC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CC
T ss_pred ccCCCCCCCEEECCCCcCcc-cCC----Cc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CC
Confidence 47888889999999998887 554 32 478888888888885 55 58888888888888888875 44
No 127
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.56 E-value=7e-08 Score=81.06 Aligned_cols=61 Identities=20% Similarity=0.199 Sum_probs=43.6
Q ss_pred CCCCEEeccCCccCccccCccccccCCCCCC-------CEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccCC
Q 038455 99 EELQSLDLSENWFTGIYENRAYDSFGSLKQL-------KMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRT 168 (170)
Q Consensus 99 ~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L-------~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP 168 (170)
++|+.|+|++|.|+. +|. +.. +| +.|+|++|+|+ .+|..+..+++|+.|+|++|++++.+|
T Consensus 180 ~~L~~L~Ls~N~L~~-lp~-----~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 180 ESLEALDVSTNLLES-LPA-----VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp TTCCEEECCSSCCSS-CCC-----CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred CCCCEEECcCCCCCc-hhh-----HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence 567777777777663 442 221 55 88888888888 578777778899999999999887765
No 128
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.54 E-value=1.3e-08 Score=80.90 Aligned_cols=69 Identities=17% Similarity=0.289 Sum_probs=42.9
Q ss_pred cCCCCCCCCEEeccCCccCcc----ccCcccccc--CCCCCCCEEECCCCCCCC----CChhhc-cCCCCCCEEeCCCCc
Q 038455 94 LFHPFEELQSLDLSENWFTGI----YENRAYDSF--GSLKQLKMLNLGFNYVND----SILPYL-NTLTSLTTLNLSYNK 162 (170)
Q Consensus 94 ~~~~l~~L~~L~ls~N~l~~~----~p~~~~~~~--~~l~~L~~L~Ls~N~l~g----~~p~~~-~~l~~L~~L~L~~N~ 162 (170)
.+..+++|++|+|++|.+++. ++. .+ +.+++|+.|+|++|.+++ .+|..+ .++++|+.|++++|+
T Consensus 239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~----~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCLLSARGAAAVVD----AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HGGGCTTCCEEECTTCCCCHHHHHHHHH----HHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred HHccCCCcCEEECCCCCCchhhHHHHHH----HHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 345566666677766666654 233 33 336677777777777765 366655 556777777777777
Q ss_pred Cccc
Q 038455 163 IEGS 166 (170)
Q Consensus 163 l~g~ 166 (170)
+++.
T Consensus 315 l~~~ 318 (386)
T 2ca6_A 315 FSEE 318 (386)
T ss_dssp SCTT
T ss_pred CCcc
Confidence 7654
No 129
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.54 E-value=9.9e-10 Score=79.80 Aligned_cols=82 Identities=23% Similarity=0.302 Sum_probs=68.8
Q ss_pred CCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChh
Q 038455 66 RRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILP 145 (170)
Q Consensus 66 ~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~ 145 (170)
..++.|+++++. ++.+ + .+..+++|++|++++|.++. +|. .+..+++|+.|++++|++.+ +|
T Consensus 48 ~~L~~L~ls~n~-l~~l---------~-~~~~l~~L~~L~l~~n~l~~-l~~----~~~~~~~L~~L~L~~N~l~~-l~- 109 (198)
T 1ds9_A 48 KACKHLALSTNN-IEKI---------S-SLSGMENLRILSLGRNLIKK-IEN----LDAVADTLEELWISYNQIAS-LS- 109 (198)
T ss_dssp TTCSEEECSEEE-ESCC---------C-CHHHHTTCCEEEEEEEEECS-CSS----HHHHHHHCSEEEEEEEECCC-HH-
T ss_pred CCCCEEECCCCC-Cccc---------c-ccccCCCCCEEECCCCCccc-ccc----hhhcCCcCCEEECcCCcCCc-CC-
Confidence 468888888887 4432 2 67889999999999999985 676 77778999999999999995 55
Q ss_pred hccCCCCCCEEeCCCCcCcc
Q 038455 146 YLNTLTSLTTLNLSYNKIEG 165 (170)
Q Consensus 146 ~~~~l~~L~~L~L~~N~l~g 165 (170)
.+..+++|+.|++++|++++
T Consensus 110 ~~~~l~~L~~L~l~~N~i~~ 129 (198)
T 1ds9_A 110 GIEKLVNLRVLYMSNNKITN 129 (198)
T ss_dssp HHHHHHHSSEEEESEEECCC
T ss_pred ccccCCCCCEEECCCCcCCc
Confidence 68899999999999999983
No 130
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.52 E-value=1.5e-08 Score=80.09 Aligned_cols=66 Identities=23% Similarity=0.359 Sum_probs=38.7
Q ss_pred CCCCEEeccCCccCccccCccccccCCC-CCCCEEECCCCCCCCCChhhc----cC-CCCCCEEeCCCCcCc
Q 038455 99 EELQSLDLSENWFTGIYENRAYDSFGSL-KQLKMLNLGFNYVNDSILPYL----NT-LTSLTTLNLSYNKIE 164 (170)
Q Consensus 99 ~~L~~L~ls~N~l~~~~p~~~~~~~~~l-~~L~~L~Ls~N~l~g~~p~~~----~~-l~~L~~L~L~~N~l~ 164 (170)
++|++|++++|.+++..+..-...+..+ ++|+.|++++|.+++..+..+ .. .++|++|+|++|.++
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 151 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLG 151 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCC
Confidence 6677777777777654443000013333 677777777777765555443 23 257777777777776
No 131
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.49 E-value=3e-08 Score=78.77 Aligned_cols=68 Identities=29% Similarity=0.347 Sum_probs=52.9
Q ss_pred cCCCCCCCCEEeccCCccC----ccccCccccccCCCCCCCEEECCCCCCCCC----Chhhcc--CCCCCCEEeCCCCcC
Q 038455 94 LFHPFEELQSLDLSENWFT----GIYENRAYDSFGSLKQLKMLNLGFNYVNDS----ILPYLN--TLTSLTTLNLSYNKI 163 (170)
Q Consensus 94 ~~~~l~~L~~L~ls~N~l~----~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~----~p~~~~--~l~~L~~L~L~~N~l 163 (170)
.+..+++|++|+|++|.++ ..+|. .+..+++|+.|+|++|.+++. +|..+. .+++|+.|+|++|.+
T Consensus 211 ~l~~~~~L~~L~Ls~n~l~~~g~~~l~~----~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i 286 (386)
T 2ca6_A 211 GLAYCQELKVLDLQDNTFTHLGSSALAI----ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI 286 (386)
T ss_dssp TGGGCTTCCEEECCSSCCHHHHHHHHHH----HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCC
T ss_pred HhhcCCCccEEECcCCCCCcHHHHHHHH----HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcC
Confidence 5667888888888888885 55666 677888888888888888765 556663 388888888888888
Q ss_pred cc
Q 038455 164 EG 165 (170)
Q Consensus 164 ~g 165 (170)
++
T Consensus 287 ~~ 288 (386)
T 2ca6_A 287 EL 288 (386)
T ss_dssp BH
T ss_pred CH
Confidence 75
No 132
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.48 E-value=2.9e-08 Score=77.08 Aligned_cols=68 Identities=22% Similarity=0.252 Sum_probs=49.9
Q ss_pred cCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCC-CCCCC-ChhhccCCCCCCEEeCCCC-cCcc
Q 038455 94 LFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFN-YVNDS-ILPYLNTLTSLTTLNLSYN-KIEG 165 (170)
Q Consensus 94 ~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N-~l~g~-~p~~~~~l~~L~~L~L~~N-~l~g 165 (170)
.+..+++|++|++++|.+++..+. .+..+++|+.|++++| .+++. +|..+..+++|+.|++++| .+++
T Consensus 113 ~~~~~~~L~~L~L~~~~l~~~~~~----~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~ 183 (336)
T 2ast_B 113 ILSQCSKLQNLSLEGLRLSDPIVN----TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTE 183 (336)
T ss_dssp HHTTBCCCSEEECTTCBCCHHHHH----HHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCH
T ss_pred HHhhCCCCCEEeCcCcccCHHHHH----HHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcCh
Confidence 456777888888888887766666 6777888888888887 56642 5666777778888888777 6653
No 133
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.41 E-value=4.6e-08 Score=82.94 Aligned_cols=59 Identities=22% Similarity=0.123 Sum_probs=36.6
Q ss_pred CCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCcccCC
Q 038455 97 PFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIEGSRT 168 (170)
Q Consensus 97 ~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~iP 168 (170)
.+++|++|+|++|+++. +|. .+++|+.|++++|.+++ +|. .+++|+.|++++|+++ .+|
T Consensus 79 ~l~~L~~L~Ls~N~l~~-lp~-------~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~-~lp 137 (622)
T 3g06_A 79 LPPELRTLEVSGNQLTS-LPV-------LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLT-SLP 137 (622)
T ss_dssp CCTTCCEEEECSCCCSC-CCC-------CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCS-CCC
T ss_pred cCCCCCEEEcCCCcCCc-CCC-------CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCC-cCC
Confidence 35667777777777765 442 35677777777777774 343 4456666666666665 344
No 134
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.36 E-value=9.3e-07 Score=69.42 Aligned_cols=75 Identities=23% Similarity=0.136 Sum_probs=55.1
Q ss_pred CCCCCcCCCCC-CCCEEeccCCccCccccCccccccCCCCCCCEEECCC-CCCCCCChhhccCCCCCCEEeCCCCcCccc
Q 038455 89 FMNMSLFHPFE-ELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGF-NYVNDSILPYLNTLTSLTTLNLSYNKIEGS 166 (170)
Q Consensus 89 ~~~~~~~~~l~-~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~-N~l~g~~p~~~~~l~~L~~L~L~~N~l~g~ 166 (170)
.++...|..+. .++.|++++|.|+. +|. ......+|+.|++++ |.+....+..|..+++|+.|+|++|+|+ .
T Consensus 143 ~l~~~~f~~~~~~l~~L~L~~N~i~~-i~~----~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~ 216 (350)
T 4ay9_X 143 TIERNSFVGLSFESVILWLNKNGIQE-IHN----SAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-S 216 (350)
T ss_dssp EECTTSSTTSBSSCEEEECCSSCCCE-ECT----TSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-C
T ss_pred cccccchhhcchhhhhhccccccccC-CCh----hhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-c
Confidence 34445555654 58889999999987 454 455667899999975 5566433356889999999999999998 6
Q ss_pred CCC
Q 038455 167 RTK 169 (170)
Q Consensus 167 iP~ 169 (170)
+|.
T Consensus 217 lp~ 219 (350)
T 4ay9_X 217 LPS 219 (350)
T ss_dssp CCS
T ss_pred cCh
Confidence 775
No 135
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.32 E-value=8.2e-07 Score=69.12 Aligned_cols=87 Identities=18% Similarity=0.156 Sum_probs=68.5
Q ss_pred CeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCC-EEECCCCCCCCCChh
Q 038455 67 RVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLK-MLNLGFNYVNDSILP 145 (170)
Q Consensus 67 ~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~-~L~Ls~N~l~g~~p~ 145 (170)
.++.++|+++. +..++...|..+++|+.|+++.| +..+.+. .|.++++|+ .+++.+ .+...-+.
T Consensus 227 ~L~~l~L~~n~---------i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~----aF~~~~~L~~~l~l~~-~l~~I~~~ 291 (329)
T 3sb4_A 227 NLVSLDISKTN---------ATTIPDFTFAQKKYLLKIKLPHN-LKTIGQR----VFSNCGRLAGTLELPA-SVTAIEFG 291 (329)
T ss_dssp TCCEEECTTBC---------CCEECTTTTTTCTTCCEEECCTT-CCEECTT----TTTTCTTCCEEEEECT-TCCEECTT
T ss_pred CCeEEECCCCC---------cceecHhhhhCCCCCCEEECCcc-cceehHH----HhhCChhccEEEEEcc-cceEEchh
Confidence 56666666655 34556778999999999999998 7765555 899999999 999988 77755567
Q ss_pred hccCCCCCCEEeCCCCcCcccCCC
Q 038455 146 YLNTLTSLTTLNLSYNKIEGSRTK 169 (170)
Q Consensus 146 ~~~~l~~L~~L~L~~N~l~g~iP~ 169 (170)
.|.++++|+.++++.|.++ .|+.
T Consensus 292 aF~~c~~L~~l~l~~n~i~-~I~~ 314 (329)
T 3sb4_A 292 AFMGCDNLRYVLATGDKIT-TLGD 314 (329)
T ss_dssp TTTTCTTEEEEEECSSCCC-EECT
T ss_pred hhhCCccCCEEEeCCCccC-ccch
Confidence 8999999999999988887 5553
No 136
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.31 E-value=3.5e-08 Score=75.43 Aligned_cols=72 Identities=19% Similarity=0.216 Sum_probs=52.2
Q ss_pred CCCCcCCCCCCCCE--EeccCCcc---CccccCccccccCCCCCCCEEECCCCCCCC--CChhhccCCCCCCEEeCCCCc
Q 038455 90 MNMSLFHPFEELQS--LDLSENWF---TGIYENRAYDSFGSLKQLKMLNLGFNYVND--SILPYLNTLTSLTTLNLSYNK 162 (170)
Q Consensus 90 ~~~~~~~~l~~L~~--L~ls~N~l---~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g--~~p~~~~~l~~L~~L~L~~N~ 162 (170)
++.+.|...+.|.. ++++.|.. ...++. ...++++|+.|+|++|+|++ .+|..+..+++|+.|+|++|+
T Consensus 132 LdLs~l~~dp~L~~~~l~l~~N~~~~~~~~l~i----~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~ 207 (267)
T 3rw6_A 132 LDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRI----IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE 207 (267)
T ss_dssp EECTTGGGCHHHHHTTCCCCTTSHHHHHHHHHH----HHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC
T ss_pred cCHHHcCCCcchhhcCccccCCHHHHHHHHHHH----HHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc
Confidence 33444555555665 67777743 222222 23568899999999999997 456778899999999999999
Q ss_pred Ccc
Q 038455 163 IEG 165 (170)
Q Consensus 163 l~g 165 (170)
|++
T Consensus 208 i~~ 210 (267)
T 3rw6_A 208 LKS 210 (267)
T ss_dssp CCS
T ss_pred cCC
Confidence 985
No 137
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.25 E-value=2e-07 Score=73.51 Aligned_cols=89 Identities=21% Similarity=0.259 Sum_probs=70.2
Q ss_pred CCCeEEeecCCcCccceecCCCCCCCCC----CcCCCCC-CCCEEeccCCccCccccCccccccCCC-----CCCCEEEC
Q 038455 65 TRRVMQLSLNYTRRLKYYDRTSASFMNM----SLFHPFE-ELQSLDLSENWFTGIYENRAYDSFGSL-----KQLKMLNL 134 (170)
Q Consensus 65 ~~~v~~L~L~~~~~l~~~~~~~~~~~~~----~~~~~l~-~L~~L~ls~N~l~~~~p~~~~~~~~~l-----~~L~~L~L 134 (170)
...++.|+|+++. ++.. .. ..|..++ +|++|++++|.+++..+. .+..+ ++|+.|+|
T Consensus 21 ~~~L~~L~Ls~n~-l~~~--------~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~----~l~~~l~~~~~~L~~L~L 87 (362)
T 3goz_A 21 PHGVTSLDLSLNN-LYSI--------STVELIQAFANTPASVTSLNLSGNSLGFKNSD----ELVQILAAIPANVTSLNL 87 (362)
T ss_dssp CTTCCEEECTTSC-GGGS--------CHHHHHHHHHTCCTTCCEEECCSSCGGGSCHH----HHHHHHHTSCTTCCEEEC
T ss_pred CCCceEEEccCCC-CChH--------HHHHHHHHHHhCCCceeEEECcCCCCCHHHHH----HHHHHHhccCCCccEEEC
Confidence 3458999999988 5433 23 4567788 899999999999886665 55554 99999999
Q ss_pred CCCCCCCCChhhc----cCC-CCCCEEeCCCCcCccc
Q 038455 135 GFNYVNDSILPYL----NTL-TSLTTLNLSYNKIEGS 166 (170)
Q Consensus 135 s~N~l~g~~p~~~----~~l-~~L~~L~L~~N~l~g~ 166 (170)
++|.+++..+..+ ..+ ++|+.|+|++|++++.
T Consensus 88 s~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 124 (362)
T 3goz_A 88 SGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSK 124 (362)
T ss_dssp CSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS
T ss_pred cCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcH
Confidence 9999998777644 444 8999999999999854
No 138
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.19 E-value=1e-07 Score=76.98 Aligned_cols=67 Identities=25% Similarity=0.170 Sum_probs=53.3
Q ss_pred CCCCCCCCEEeccCCccCccccCccccccCC-----CCCCCEEECCCCCCCC----CChhhccCCCCCCEEeCCCCcCcc
Q 038455 95 FHPFEELQSLDLSENWFTGIYENRAYDSFGS-----LKQLKMLNLGFNYVND----SILPYLNTLTSLTTLNLSYNKIEG 165 (170)
Q Consensus 95 ~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~-----l~~L~~L~Ls~N~l~g----~~p~~~~~l~~L~~L~L~~N~l~g 165 (170)
+..+++|++|++++|.+++..+. .+.. .++|+.|++++|.+++ .+|..+..+++|+.|++++|++++
T Consensus 337 l~~~~~L~~L~Ls~n~i~~~~~~----~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 337 LAQNRFLLELQISNNRLEDAGVR----ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp HHHCSSCCEEECCSSBCHHHHHH----HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred HhhCCCccEEEccCCccccccHH----HHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 44568899999999988765443 3332 6789999999999986 678888889999999999999874
No 139
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.02 E-value=4.4e-07 Score=73.25 Aligned_cols=40 Identities=20% Similarity=0.111 Sum_probs=17.5
Q ss_pred CCCCCCEEECCCCCCCCCChhhccC-----CCCCCEEeCCCCcCc
Q 038455 125 SLKQLKMLNLGFNYVNDSILPYLNT-----LTSLTTLNLSYNKIE 164 (170)
Q Consensus 125 ~l~~L~~L~Ls~N~l~g~~p~~~~~-----l~~L~~L~L~~N~l~ 164 (170)
.+++|+.|++++|.+.+..+..+.. .++|+.|++++|.++
T Consensus 339 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~ 383 (461)
T 1z7x_W 339 QNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS 383 (461)
T ss_dssp HCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred hCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCC
Confidence 3444555555555444332222221 344555555555544
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.00 E-value=1.3e-06 Score=69.53 Aligned_cols=65 Identities=20% Similarity=0.228 Sum_probs=45.2
Q ss_pred CCCCCCCEEeccCCccCccc----cCccccccCCCCCCCEEECCCCCCCCC----ChhhccCCCCCCEEeCCCCcCc
Q 038455 96 HPFEELQSLDLSENWFTGIY----ENRAYDSFGSLKQLKMLNLGFNYVNDS----ILPYLNTLTSLTTLNLSYNKIE 164 (170)
Q Consensus 96 ~~l~~L~~L~ls~N~l~~~~----p~~~~~~~~~l~~L~~L~Ls~N~l~g~----~p~~~~~l~~L~~L~L~~N~l~ 164 (170)
..+++|++|+|++|.+...- .. .+...++|+.|+|++|.|+.. ++..+...++|++|+|++|.|+
T Consensus 180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~----~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 180 AGNTSVTHLSLLHTGLGDEGLELLAA----QLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HTCSSCCEEECTTSSCHHHHHHHHHH----HGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred hcCCCcCEEeCCCCCCCcHHHHHHHH----HHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 45677888888888876421 22 456667888888888888642 3344556678888888888876
No 141
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.81 E-value=3.8e-06 Score=66.84 Aligned_cols=64 Identities=22% Similarity=0.253 Sum_probs=47.3
Q ss_pred CCCCCCEEeccCCccCcc----ccCccccccCCCCCCCEEECCCCCCCCC----ChhhccCCCCCCEEeCCCCcCc
Q 038455 97 PFEELQSLDLSENWFTGI----YENRAYDSFGSLKQLKMLNLGFNYVNDS----ILPYLNTLTSLTTLNLSYNKIE 164 (170)
Q Consensus 97 ~l~~L~~L~ls~N~l~~~----~p~~~~~~~~~l~~L~~L~Ls~N~l~g~----~p~~~~~l~~L~~L~L~~N~l~ 164 (170)
..+.|+.|+|++|.++.. ++. .+...++|++|+|++|.|... ++..+...++|+.|+|++|.|+
T Consensus 153 ~~~~L~~L~Ls~n~l~~~~~~~l~~----~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 153 DQCQITTLRLSNNPLTAAGVAVLME----GLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG 224 (372)
T ss_dssp TTCCCCEEECCSSCCHHHHHHHHHH----HHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred cCCccceeeCCCCCCChHHHHHHHH----HHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence 456788888888887642 222 346678899999999988642 3556777788999999999886
No 142
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.64 E-value=7.5e-06 Score=58.74 Aligned_cols=63 Identities=19% Similarity=0.278 Sum_probs=35.0
Q ss_pred CCCCCEEeccCCccCcc----ccCccccccCCCCCCCEEEC--CCCCCCCC----ChhhccCCCCCCEEeCCCCcCc
Q 038455 98 FEELQSLDLSENWFTGI----YENRAYDSFGSLKQLKMLNL--GFNYVNDS----ILPYLNTLTSLTTLNLSYNKIE 164 (170)
Q Consensus 98 l~~L~~L~ls~N~l~~~----~p~~~~~~~~~l~~L~~L~L--s~N~l~g~----~p~~~~~l~~L~~L~L~~N~l~ 164 (170)
.+.|++|+|++|.|... +.. .+...+.|+.|+| +.|.|... +...+...+.|+.|+|++|.+.
T Consensus 92 n~~L~~L~L~~N~i~~~g~~~l~~----~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 92 NNTLKSLNVESNFISGSGILALVE----ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp CSSCCEEECCSSCCCHHHHHHHHH----GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CCCcCEEECcCCcCCHHHHHHHHH----HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 35566666666666532 112 3455566666666 55666532 2233444566666666666653
No 143
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.62 E-value=0.00017 Score=48.87 Aligned_cols=37 Identities=24% Similarity=0.266 Sum_probs=26.0
Q ss_pred CCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCC
Q 038455 100 ELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVN 140 (170)
Q Consensus 100 ~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~ 140 (170)
+|+.|+|++|+|+...+. .|..+++|+.|+|++|.+.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~----~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPG----LLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TCSEEECTTSCCSSCCTT----TGGGCTTCCEEECCSSCCB
T ss_pred CCCEEECCCCcCCccChh----hhhhccccCEEEecCCCee
Confidence 477777777777775444 6667777777777777663
No 144
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.55 E-value=1.8e-05 Score=56.61 Aligned_cols=84 Identities=12% Similarity=0.101 Sum_probs=61.5
Q ss_pred CCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCc-cCccccCccccccCCC----CCCCEEECCCCC-C
Q 038455 66 RRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENW-FTGIYENRAYDSFGSL----KQLKMLNLGFNY-V 139 (170)
Q Consensus 66 ~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~-l~~~~p~~~~~~~~~l----~~L~~L~Ls~N~-l 139 (170)
..+++||++++. ++.. ....+..+++|+.|+|+++. ++..- ...+..+ ++|+.|+|+++. +
T Consensus 61 ~~L~~LDLs~~~-Itd~--------GL~~L~~~~~L~~L~L~~C~~ItD~g----L~~L~~~~~~~~~L~~L~Ls~C~~I 127 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSI--------GFDHMEGLQYVEKIRLCKCHYIEDGC----LERLSQLENLQKSMLEMEIISCGNV 127 (176)
T ss_dssp CCEEEEEEESCC-CCGG--------GGGGGTTCSCCCEEEEESCTTCCHHH----HHHHHTCHHHHHHCCEEEEESCTTC
T ss_pred ceEeEEeCcCCC-ccHH--------HHHHhcCCCCCCEEEeCCCCccCHHH----HHHHHhcccccCCCCEEEcCCCCcC
Confidence 469999999887 4322 12345789999999999985 66432 2255554 479999999975 7
Q ss_pred CCCChhhccCCCCCCEEeCCCCc
Q 038455 140 NDSILPYLNTLTSLTTLNLSYNK 162 (170)
Q Consensus 140 ~g~~p~~~~~l~~L~~L~L~~N~ 162 (170)
+..--..+..+++|+.|+|++..
T Consensus 128 TD~Gl~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 128 TDKGIIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp CHHHHHHGGGCTTCCEEEEESCT
T ss_pred CHHHHHHHhcCCCCCEEECCCCC
Confidence 75444567889999999998874
No 145
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.53 E-value=1.6e-05 Score=65.94 Aligned_cols=65 Identities=12% Similarity=-0.054 Sum_probs=48.3
Q ss_pred CCCCCCEEeccCCccCcc-ccCccccccCCCCCCCEEECCCCCCCCC-ChhhccCCCCCCEEeCCCCcCcc
Q 038455 97 PFEELQSLDLSENWFTGI-YENRAYDSFGSLKQLKMLNLGFNYVNDS-ILPYLNTLTSLTTLNLSYNKIEG 165 (170)
Q Consensus 97 ~l~~L~~L~ls~N~l~~~-~p~~~~~~~~~l~~L~~L~Ls~N~l~g~-~p~~~~~l~~L~~L~L~~N~l~g 165 (170)
.+++|++|++++|.+++. ++. .+..+++|+.|++++|.+++. ++..+..+++|+.|+|++|+++.
T Consensus 461 ~~~~L~~L~L~~n~l~~~~~~~----~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 461 YSPNVRWMLLGYVGESDEGLME----FSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM 527 (592)
T ss_dssp SCTTCCEEEECSCCSSHHHHHH----HHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred hCccceEeeccCCCCCHHHHHH----HHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence 367788888888887652 343 457788899999998887644 34455678889999999988874
No 146
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.52 E-value=8.9e-06 Score=58.37 Aligned_cols=95 Identities=14% Similarity=0.133 Sum_probs=65.4
Q ss_pred CCCeEEeecCCc-CccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCC-
Q 038455 65 TRRVMQLSLNYT-RRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDS- 142 (170)
Q Consensus 65 ~~~v~~L~L~~~-~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~- 142 (170)
...++.|+|+++ . +.... ...+ ...+...+.|++|+|++|.+...-...-...+...+.|++|+|++|.|...
T Consensus 35 ~~~L~~L~L~~n~~-i~~~g---~~~l-~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 35 DPDLEEVNLNNIMN-IPVPT---LKAC-AEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp CTTCCEEECTTCTT-CCHHH---HHHH-HHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred CCCCCEEEecCCCC-CCHHH---HHHH-HHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 457899999988 5 32110 0000 223456788999999999997532110000455668899999999999753
Q ss_pred ---ChhhccCCCCCCEEeC--CCCcCc
Q 038455 143 ---ILPYLNTLTSLTTLNL--SYNKIE 164 (170)
Q Consensus 143 ---~p~~~~~l~~L~~L~L--~~N~l~ 164 (170)
+...+...+.|++|+| ++|.|.
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCC
Confidence 4566788899999999 889886
No 147
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.49 E-value=0.00017 Score=55.80 Aligned_cols=67 Identities=12% Similarity=0.047 Sum_probs=57.3
Q ss_pred CCCCCCCcCCCCCCCC-EEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeC
Q 038455 87 ASFMNMSLFHPFEELQ-SLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNL 158 (170)
Q Consensus 87 ~~~~~~~~~~~l~~L~-~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L 158 (170)
+..+....|..+.+|+ .+++.. .++.+.+. .|.++++|+.++++.|.+....+..|.++++|+.++.
T Consensus 261 i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~----aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 261 LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFG----AFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CCEECTTTTTTCTTCCEEEEECT-TCCEECTT----TTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred cceehHHHhhCChhccEEEEEcc-cceEEchh----hhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 3456678899999999 999998 77775566 8999999999999999999666678999999999864
No 148
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.25 E-value=7.2e-05 Score=62.05 Aligned_cols=65 Identities=14% Similarity=0.138 Sum_probs=44.6
Q ss_pred CCCCCCEEeccCCccCcc----ccCccccccCCCCCCCEEECCCCCCCC----CChhhccCCCCCCEEeCCCCcCcc
Q 038455 97 PFEELQSLDLSENWFTGI----YENRAYDSFGSLKQLKMLNLGFNYVND----SILPYLNTLTSLTTLNLSYNKIEG 165 (170)
Q Consensus 97 ~l~~L~~L~ls~N~l~~~----~p~~~~~~~~~l~~L~~L~Ls~N~l~g----~~p~~~~~l~~L~~L~L~~N~l~g 165 (170)
.+++|++|+|++|.+++. ++. .+..+++|+.|+++.|.+.+ .++..+..+++|+.|++++|.+.+
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~----~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~ 234 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHE----LAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE 234 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHH----HHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG
T ss_pred hCCCCCEEECccccccCcchhHHHH----HHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH
Confidence 567888888888877554 222 34567778888888888763 234445677888888888877653
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.11 E-value=6.9e-05 Score=59.44 Aligned_cols=67 Identities=18% Similarity=0.320 Sum_probs=41.8
Q ss_pred CCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCC----ChhhccCCCCCCEEeCCCCcCc
Q 038455 97 PFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDS----ILPYLNTLTSLTTLNLSYNKIE 164 (170)
Q Consensus 97 ~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~----~p~~~~~l~~L~~L~L~~N~l~ 164 (170)
.+++|+.|+|.+|.+....+. .+.....+++|+.|+|+.|.+.+. ++..+..+++|+.|+|+.|.++
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~-~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVE-MFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHH-HHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCCcCEEeCCCCCCchHHHH-HHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 466777777777776543221 001123567788888888877653 3333455678888888888765
No 150
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.09 E-value=0.0014 Score=52.42 Aligned_cols=68 Identities=9% Similarity=0.138 Sum_probs=41.5
Q ss_pred CCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcCc
Q 038455 90 MNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKIE 164 (170)
Q Consensus 90 ~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l~ 164 (170)
+....|..+++|+.+++. +.++.+-.. .|.++++|+.+.|..| +...-...|.++ +|+.+++.+|.+.
T Consensus 291 I~~~aF~~c~~L~~l~l~-~~i~~I~~~----aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 291 IHPYCLEGCPKLARFEIP-ESIRILGQG----LLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp ECTTTTTTCTTCCEECCC-TTCCEECTT----TTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred ECHHHhhCCccCCeEEeC-CceEEEhhh----hhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence 444556666666666666 335443333 6666777777777544 443344567777 7777777777654
No 151
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=96.93 E-value=0.00014 Score=60.20 Aligned_cols=64 Identities=20% Similarity=0.178 Sum_probs=26.4
Q ss_pred CCCCCCEEeccCCccCccccCcccc-ccCCCCCCCEEECCCCC--CCCC-ChhhccCCCCCCEEeCCCC
Q 038455 97 PFEELQSLDLSENWFTGIYENRAYD-SFGSLKQLKMLNLGFNY--VNDS-ILPYLNTLTSLTTLNLSYN 161 (170)
Q Consensus 97 ~l~~L~~L~ls~N~l~~~~p~~~~~-~~~~l~~L~~L~Ls~N~--l~g~-~p~~~~~l~~L~~L~L~~N 161 (170)
.+++|++|++++|.+++..+. .+. ....+++|+.|++++|. +... ++..+..+++|+.|++++|
T Consensus 154 ~~~~L~~L~L~~~~i~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 154 TCRNLKELDLRESDVDDVSGH-WLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp HCTTCCEEECTTCEEECCCGG-GGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred hCCCCCEEeCcCCccCCcchH-HHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 345555555555554432221 000 11234455555555554 1100 1111233455555555555
No 152
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=96.85 E-value=0.00013 Score=60.48 Aligned_cols=63 Identities=13% Similarity=0.104 Sum_probs=36.6
Q ss_pred CCCCCEEeccCCccCccccCcccccc-CCCCCCCEEECCCCCCCCCChh-hccCCCCCCEEeCCCCcCc
Q 038455 98 FEELQSLDLSENWFTGIYENRAYDSF-GSLKQLKMLNLGFNYVNDSILP-YLNTLTSLTTLNLSYNKIE 164 (170)
Q Consensus 98 l~~L~~L~ls~N~l~~~~p~~~~~~~-~~l~~L~~L~Ls~N~l~g~~p~-~~~~l~~L~~L~L~~N~l~ 164 (170)
+++|+.|++++|.+++.... .+ ..+++|+.|++++|.+++..+. .+..+++|+.|++++|+++
T Consensus 455 ~~~L~~L~L~~~~i~~~~~~----~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 455 AKKMEMLSVAFAGDSDLGMH----HVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp CTTCCEEEEESCCSSHHHHH----HHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred chhccEeeccCCCCcHHHHH----HHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 55666666666666543332 22 4466677777777776433332 3344667777777777653
No 153
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.49 E-value=0.0029 Score=42.65 Aligned_cols=55 Identities=22% Similarity=0.137 Sum_probs=31.6
Q ss_pred EEeccCCccC-ccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCcC
Q 038455 103 SLDLSENWFT-GIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNKI 163 (170)
Q Consensus 103 ~L~ls~N~l~-~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~l 163 (170)
.++.+++.++ ..+|. .+ .++|+.|+|++|+|+...+..|..+++|+.|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~----~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPT----AF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCS----CC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCC----CC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4555555554 12443 22 23466677777777644445566666677777776665
No 154
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.26 E-value=0.006 Score=48.79 Aligned_cols=68 Identities=15% Similarity=0.043 Sum_probs=45.8
Q ss_pred CCCCCcCCCCCCCCEEeccCCccC-----ccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCC
Q 038455 89 FMNMSLFHPFEELQSLDLSENWFT-----GIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYN 161 (170)
Q Consensus 89 ~~~~~~~~~l~~L~~L~ls~N~l~-----~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N 161 (170)
.+....|..+++|+.+++.+|.+. ...+. .|..+++|+.+.+.+ .+...-...|.++++|+.+.|..|
T Consensus 261 ~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~----aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~ 333 (401)
T 4fdw_A 261 NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPY----CLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN 333 (401)
T ss_dssp EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTT----TTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT
T ss_pred EEChhHhhCCCCCCEEEeCCccccCCcccEECHH----HhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc
Confidence 444566777788888888777654 22333 677788888888873 465344457778888888887554
No 155
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=96.09 E-value=0.002 Score=45.88 Aligned_cols=61 Identities=18% Similarity=0.344 Sum_probs=46.7
Q ss_pred CCCEEeccCCccCccccCccccccCCCCCCCEEECCCCC-CCCCChhhccCC----CCCCEEeCCCCc-Cc
Q 038455 100 ELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNY-VNDSILPYLNTL----TSLTTLNLSYNK-IE 164 (170)
Q Consensus 100 ~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~-l~g~~p~~~~~l----~~L~~L~L~~N~-l~ 164 (170)
+|+.||++++.++.. ++..+..+++|+.|+|+++. ++..--..+..+ ++|+.|+|+++. ++
T Consensus 62 ~L~~LDLs~~~Itd~----GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT 128 (176)
T 3e4g_A 62 KIQAIDATDSCIMSI----GFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT 128 (176)
T ss_dssp CEEEEEEESCCCCGG----GGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred eEeEEeCcCCCccHH----HHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC
Confidence 699999999987653 33378899999999999985 665434456664 479999999874 54
No 156
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=95.65 E-value=0.033 Score=43.99 Aligned_cols=68 Identities=22% Similarity=0.311 Sum_probs=47.4
Q ss_pred CCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCCc
Q 038455 89 FMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYNK 162 (170)
Q Consensus 89 ~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N~ 162 (170)
.+....|..+.+|+.+++..+ ++.+-.. .|.++++|+.+.+..+ +...-...|.++++|+.+++.+|.
T Consensus 301 ~I~~~aF~~c~~L~~i~lp~~-v~~I~~~----aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 301 ELPESVFAGCISLKSIDIPEG-ITQILDD----AFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp EECTTTTTTCTTCCEEECCTT-CCEECTT----TTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred ccCceeecCCCCcCEEEeCCc-ccEehHh----HhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence 445566777888888888654 4443334 7888888888888654 553444578888888888887764
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.54 E-value=0.023 Score=44.44 Aligned_cols=68 Identities=10% Similarity=0.088 Sum_probs=48.1
Q ss_pred CCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCC
Q 038455 89 FMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYN 161 (170)
Q Consensus 89 ~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N 161 (170)
.+....|..+++|+.+.+..+.++.+-.. .|.++.+|+.+.|..+ +...-...|.++.+|+.+.+..+
T Consensus 276 ~i~~~aF~~c~~L~~i~l~~~~i~~I~~~----aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 276 TVPYLLCSGCSNLTKVVMDNSAIETLEPR----VFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp EECTTTTTTCTTCCEEEECCTTCCEECTT----TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred eccccccccccccccccccccccceehhh----hhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 34455677888888888888777765445 7888888888888754 44233456888888888877543
No 158
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=95.52 E-value=0.016 Score=45.81 Aligned_cols=67 Identities=19% Similarity=0.234 Sum_probs=40.7
Q ss_pred CCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCC
Q 038455 89 FMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYN 161 (170)
Q Consensus 89 ~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N 161 (170)
.+....|..+++|+.+++..+ ++.+-.. .|.++++|+.+.+..+ +...-...|.++.+|+.+.+..+
T Consensus 310 ~I~~~aF~~c~~L~~i~lp~~-v~~I~~~----aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 310 FIGEEAFESCTSLVSIDLPYL-VEEIGKR----SFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp EECTTTTTTCTTCCEECCCTT-CCEECTT----TTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred eechhhhcCCCCCCEEEeCCc-ccEEhHH----hccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 344455667777777777543 4443333 6777777777777655 44333446777777777776543
No 159
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.12 E-value=0.011 Score=42.93 Aligned_cols=92 Identities=10% Similarity=0.148 Sum_probs=57.0
Q ss_pred CCCeEEeecCCc-CccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCC-
Q 038455 65 TRRVMQLSLNYT-RRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDS- 142 (170)
Q Consensus 65 ~~~v~~L~L~~~-~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~- 142 (170)
...+++|+|+++ . +... +...+ ...+..=+.|+.|+|++|.|...--..-...+..-+.|+.|+|+.|.|...
T Consensus 40 n~~L~~L~L~~nn~-igd~---ga~~l-a~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G 114 (197)
T 1pgv_A 40 DTDLKEVNINNMKR-VSKE---RIRSL-IEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL 114 (197)
T ss_dssp CSSCCEEECTTCCS-SCHH---HHHHH-HHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred CCCccEEECCCCCC-CCHH---HHHHH-HHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence 456788888765 3 2110 00000 123445568999999999997432220000344557899999999999743
Q ss_pred ---ChhhccCCCCCCEEeCCCC
Q 038455 143 ---ILPYLNTLTSLTTLNLSYN 161 (170)
Q Consensus 143 ---~p~~~~~l~~L~~L~L~~N 161 (170)
+-+.+..-+.|+.|+|++|
T Consensus 115 a~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 115 LARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHHhhCCceeEEECCCC
Confidence 3345666678999999865
No 160
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=94.43 E-value=0.017 Score=45.58 Aligned_cols=69 Identities=16% Similarity=0.188 Sum_probs=41.5
Q ss_pred CCCCCCEEeccC--CccCccccCcccc-cc--CCCCCCCEEECCCCCCCCCChhhc---cCCCCCCEEeCCCCcCcc
Q 038455 97 PFEELQSLDLSE--NWFTGIYENRAYD-SF--GSLKQLKMLNLGFNYVNDSILPYL---NTLTSLTTLNLSYNKIEG 165 (170)
Q Consensus 97 ~l~~L~~L~ls~--N~l~~~~p~~~~~-~~--~~l~~L~~L~Ls~N~l~g~~p~~~---~~l~~L~~L~L~~N~l~g 165 (170)
.+++|+.|+|+. |...+.....+.+ .+ ..+++|+.|+|.+|.+....+..+ ..+++|++|+|+.|.++.
T Consensus 217 ~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d 293 (362)
T 2ra8_A 217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD 293 (362)
T ss_dssp BCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred cCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence 577888888753 2221110000000 12 247889999998888864444333 257889999999998864
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.15 E-value=0.029 Score=40.57 Aligned_cols=94 Identities=14% Similarity=0.200 Sum_probs=55.5
Q ss_pred CCCeEEeecCCcCccceecCCCCCCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCC---CCC
Q 038455 65 TRRVMQLSLNYTRRLKYYDRTSASFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNY---VND 141 (170)
Q Consensus 65 ~~~v~~L~L~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~---l~g 141 (170)
...++.|+|+++. +....-. .+ ...+..=+.|+.|+|+.|.|...--..-...+..-+.|+.|+|++|. +..
T Consensus 69 N~~L~~L~L~~n~-igd~ga~---al-A~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~ 143 (197)
T 1pgv_A 69 SKHIEKFSLANTA-ISDSEAR---GL-IELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGN 143 (197)
T ss_dssp CSCCCEEECTTSC-CBHHHHT---TH-HHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCH
T ss_pred CCCcCEEEccCCC-CChHHHH---HH-HHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCH
Confidence 4568888888887 3211000 00 11222335799999999998743211000145556779999998653 332
Q ss_pred C----ChhhccCCCCCCEEeCCCCcC
Q 038455 142 S----ILPYLNTLTSLTTLNLSYNKI 163 (170)
Q Consensus 142 ~----~p~~~~~l~~L~~L~L~~N~l 163 (170)
. +.+.+..-+.|+.|+++.|.+
T Consensus 144 ~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 144 QVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 1 334556667899999987764
No 162
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=93.82 E-value=0.13 Score=40.56 Aligned_cols=64 Identities=22% Similarity=0.241 Sum_probs=47.2
Q ss_pred CCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCC
Q 038455 92 MSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYN 161 (170)
Q Consensus 92 ~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N 161 (170)
...|..+.+|+.+.+..+ ++.+-.. .|.++++|+.+++..+ +...-...|.++.+|+.+.+..|
T Consensus 290 ~~~F~~~~~L~~i~l~~~-i~~I~~~----aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 290 EKTFYGCSSLTEVKLLDS-VKFIGEE----AFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp TTTTTTCTTCCEEEECTT-CCEECTT----TTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred cccccccccccccccccc-cceechh----hhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence 345667788888888654 5543344 7888999999999754 55344567999999999999766
No 163
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=93.73 E-value=0.16 Score=39.57 Aligned_cols=67 Identities=9% Similarity=0.074 Sum_probs=46.9
Q ss_pred CCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCC
Q 038455 90 MNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYN 161 (170)
Q Consensus 90 ~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N 161 (170)
+....|..+..|+.+.+..+ +...... .|..+++|+.+.+..+.+...-...|.++.+|+.+.|..+
T Consensus 254 I~~~aF~~~~~l~~i~l~~~-i~~i~~~----aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~ 320 (379)
T 4h09_A 254 IGSFLLQNCTALKTLNFYAK-VKTVPYL----LCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA 320 (379)
T ss_dssp ECTTTTTTCTTCCEEEECCC-CSEECTT----TTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT
T ss_pred eCccccceeehhcccccccc-ceecccc----ccccccccccccccccccceehhhhhcCCCCCCEEEcCcc
Confidence 33445666667777776543 3332233 6888899999999888887444567899999999998654
No 164
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=92.04 E-value=0.35 Score=37.97 Aligned_cols=64 Identities=16% Similarity=0.228 Sum_probs=41.2
Q ss_pred CCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCC
Q 038455 92 MSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYN 161 (170)
Q Consensus 92 ~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N 161 (170)
...|..+..|+.+.+. +.++..... .|.++.+|+.+.+..+ ++..-...|.++.+|+.+.+..+
T Consensus 281 ~~aF~~c~~L~~i~l~-~~i~~I~~~----aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s 344 (394)
T 4gt6_A 281 TGAFMNCPALQDIEFS-SRITELPES----VFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS 344 (394)
T ss_dssp TTTTTTCTTCCEEECC-TTCCEECTT----TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT
T ss_pred CcccccccccccccCC-CcccccCce----eecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc
Confidence 4455666667766664 334443333 6778888888888754 44233457888888888888544
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=65.44 E-value=13 Score=23.30 Aligned_cols=44 Identities=23% Similarity=0.258 Sum_probs=30.9
Q ss_pred CCCCCCcCCCCCCCCEEeccCCccCccccCccccccCCCCCCCEEECCC
Q 038455 88 SFMNMSLFHPFEELQSLDLSENWFTGIYENRAYDSFGSLKQLKMLNLGF 136 (170)
Q Consensus 88 ~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~ 136 (170)
..+....|.+++.|+.+.+..+ ++.+-.. .|.++.+|+.+.+..
T Consensus 9 t~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~----aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 9 VGMDKSLFAGNTVIREITVQPN-IGLLYDG----MFSGCTALEKLILTG 52 (100)
T ss_dssp CSSCSCTTTTCTTCCCEEECTT-SSCCCTT----SSTTCTTCCCEEECC
T ss_pred CEecHHHhcCCCCCcEEEcCCc-hheEcHH----HHhccCCccEEEEcC
Confidence 3445677888888888888764 3433334 788888888888755
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=50.68 E-value=22 Score=22.10 Aligned_cols=39 Identities=15% Similarity=0.100 Sum_probs=30.8
Q ss_pred ccCCCCCCCEEECCCCCCCCCChhhccCCCCCCEEeCCCC
Q 038455 122 SFGSLKQLKMLNLGFNYVNDSILPYLNTLTSLTTLNLSYN 161 (170)
Q Consensus 122 ~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L~~N 161 (170)
.|.++++|+.+.|..+ ++..-...|.++.+|+.+.+...
T Consensus 15 aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 15 LFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp TTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred HhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 7899999999999765 33244467999999999988654
No 167
>3ox7_P MH027; urokinase-type plasminogen activator, peptidyl inhibitor, pharmacophore, hydrolase, hydrolase-hydrolase inhibitor COM; HET: PG4; 1.58A {Homo sapiens} PDB: 3oy5_P 3oy6_P
Probab=37.67 E-value=13 Score=16.27 Aligned_cols=10 Identities=30% Similarity=1.135 Sum_probs=7.4
Q ss_pred CCCCCCCCceE
Q 038455 50 SDCCDAWEGVM 60 (170)
Q Consensus 50 ~~~c~~w~gv~ 60 (170)
...|+ |.|..
T Consensus 5 dgacs-wrgle 14 (23)
T 3ox7_P 5 DGACS-WRGLE 14 (26)
T ss_pred Ccccc-cccch
Confidence 45699 99875
Done!