BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038457
(308 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3C98|B Chain B, Revised Structure Of The Munc18a-Syntaxin1 Complex
Length = 279
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 99/196 (50%), Gaps = 16/196 (8%)
Query: 89 VDEVGKIARNVKAKIEAINRENLANRQKPGCEKGTSVDRSRMNVTNALTKRFKELMTEFQ 148
+ ++ K A V++K+++I + + Q+ G + ++ R R + L+++F E+M+E+
Sbjct: 91 MSDIKKTANKVRSKLKSIEQ---SIEQEEGLNRSSADLRIRKTQHSTLSRKFVEVMSEYN 147
Query: 149 TLXXXXXXXXXXXXXXXXXXXXGTRPDEETIDHLIETGN-----SEQIFQKAIQEQGRGQ 203
T EE ++ ++E+GN S I +I +Q
Sbjct: 148 ATQSDYRERCKGRIQRQLEITGRTTTSEE-LEDMLESGNPAIFASGIIMDSSISKQA--- 203
Query: 204 VLNTLEEIQERHDAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNVQSG 263
L EI+ RH + ++E + +L ++MDMA+LVE+QGE++D IE V +AV V+
Sbjct: 204 ----LSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERA 259
Query: 264 TTALQNAKKHQKSSRK 279
+ + A K+Q +R+
Sbjct: 260 VSDTKKAVKYQSKARR 275
>pdb|2XHE|B Chain B, Crystal Structure Of The Unc18-Syntaxin 1 Complex From
Monosiga Brevicollis
Length = 279
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 106/200 (53%), Gaps = 8/200 (4%)
Query: 81 IKKRMEKDVDEVGKIARNVKAKIEAINRENLANRQKPGCEKGT-SVD-RSRMNVTNALTK 138
+ ++++ + + + ++A ++ I +EN +Q+ E GT S D R R + ++L++
Sbjct: 86 LNEKLQDTMARISALGNKIRADLKQIEKENKRAQQEGTFEDGTVSTDLRIRQSQHSSLSR 145
Query: 139 RFKELMTEFQTLXXXXXXXXXXXXXXXXXXXXGTRPDEETIDHLIETGNSEQIFQKAIQE 198
+F ++MT + + + D+ I +IE G +E IF ++
Sbjct: 146 KFVKVMTRYNDVQAENKRRYGENVARQCRVVEPSLSDD-AIQKVIEHG-TEGIF-SGMRL 202
Query: 199 QGRGQVLNTLEEIQERHDAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVT 258
+G LN EI++RH ++++E+ LL+L +++ DM+ LV +QGE++D IE V +
Sbjct: 203 EGAEAKLN---EIRDRHKDIQQLERSLLELHEMFTDMSTLVASQGEMIDRIEFSVEQSHN 259
Query: 259 NVQSGTTALQNAKKHQKSSR 278
V+ T + A+ +Q+S+R
Sbjct: 260 YVKKATEQVVQARHYQESAR 279
>pdb|1JTH|B Chain B, Crystal Structure And Biophysical Properties Of A Complex
Between The N-Terminal Region Of Snap25 And The Snare
Region Of Syntaxin 1a
pdb|1JTH|D Chain D, Crystal Structure And Biophysical Properties Of A Complex
Between The N-Terminal Region Of Snap25 And The Snare
Region Of Syntaxin 1a
Length = 77
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 47/73 (64%)
Query: 207 TLEEIQERHDAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNVQSGTTA 266
L EI+ RH + ++E + +L ++MDMA+LVE+QGE++D IE V +AV V+ +
Sbjct: 1 ALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSD 60
Query: 267 LQNAKKHQKSSRK 279
+ A K+Q +R+
Sbjct: 61 TKKAVKYQSKARR 73
>pdb|1HVV|A Chain A, Self-Association Of The H3 Region Of Syntaxin 1a:
Implications For Snare Complex Assembly
pdb|1HVV|B Chain B, Self-Association Of The H3 Region Of Syntaxin 1a:
Implications For Snare Complex Assembly
pdb|1HVV|C Chain C, Self-Association Of The H3 Region Of Syntaxin 1a:
Implications For Snare Complex Assembly
pdb|1HVV|D Chain D, Self-Association Of The H3 Region Of Syntaxin 1a:
Implications For Snare Complex Assembly
Length = 75
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 47/73 (64%)
Query: 207 TLEEIQERHDAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNVQSGTTA 266
L EI+ RH + ++E + +L ++MDMA+LVE+QGE++D IE V +AV V+ +
Sbjct: 2 ALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSD 61
Query: 267 LQNAKKHQKSSRK 279
+ A K+Q +R+
Sbjct: 62 TKKAVKYQSKARR 74
>pdb|3HD7|B Chain B, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup C 1 2 1
pdb|3HD7|F Chain F, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup C 1 2 1
pdb|3IPD|B Chain B, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup I 21 21 21
pdb|3IPD|F Chain F, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup I 21 21 21
Length = 109
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 47/73 (64%)
Query: 207 TLEEIQERHDAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNVQSGTTA 266
L EI+ RH + ++E + +L ++MDMA+LVE+QGE++D IE V +AV V+ +
Sbjct: 12 ALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSD 71
Query: 267 LQNAKKHQKSSRK 279
+ A K+Q +R+
Sbjct: 72 TKKAVKYQSKARR 84
>pdb|1SFC|B Chain B, Neuronal Synaptic Fusion Complex
pdb|1SFC|F Chain F, Neuronal Synaptic Fusion Complex
pdb|1SFC|J Chain J, Neuronal Synaptic Fusion Complex
Length = 83
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 46/72 (63%)
Query: 207 TLEEIQERHDAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNVQSGTTA 266
L EI+ RH + ++E + +L ++MDMA+LVE+QGE++D IE V +AV V+ +
Sbjct: 12 ALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSD 71
Query: 267 LQNAKKHQKSSR 278
+ A K+Q +R
Sbjct: 72 TKKAVKYQSKAR 83
>pdb|1L4A|B Chain B, X-Ray Structure Of The Neuronal ComplexinSNARE COMPLEX
From The Squid Loligo Pealei
Length = 88
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 47/76 (61%)
Query: 203 QVLNTLEEIQERHDAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNVQS 262
Q TL +I+ RH + ++E + +L ++MDMA+LVE+QGE++D IE V AV +++
Sbjct: 13 QAKQTLADIEARHADIMKLETSIRELHDMFMDMAMLVESQGEMIDRIEYNVEAAVDYIET 72
Query: 263 GTTALQNAKKHQKSSR 278
+ A K+Q +R
Sbjct: 73 AKVDTKKAVKYQSKAR 88
>pdb|1URQ|B Chain B, Crystal Structure Of Neuronal Q-Snares In Complex With
R-Snare Motif Of Tomosyn
Length = 75
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 44/68 (64%)
Query: 207 TLEEIQERHDAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNVQSGTTA 266
L EI+ RH + ++E + +L ++MDMA+LVE+QGE++D IE V +AV V+ +
Sbjct: 7 ALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSD 66
Query: 267 LQNAKKHQ 274
+ A K+Q
Sbjct: 67 TKKAVKYQ 74
>pdb|2NPS|B Chain B, Crystal Structure Of The Early Endosomal Snare Complex
Length = 71
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 47/68 (69%)
Query: 214 RHDAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNVQSGTTALQNAKKH 273
R A++++E +LD+ QI+ D+A+++ QG+++D+IE+ V ++ +V+ + LQ A +
Sbjct: 4 RETAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYY 63
Query: 274 QKSSRKWM 281
QK SRK M
Sbjct: 64 QKKSRKKM 71
>pdb|1N7S|B Chain B, High Resolution Structure Of A Truncated Neuronal Snare
Complex
Length = 68
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 43/67 (64%)
Query: 206 NTLEEIQERHDAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNVQSGTT 265
+ L EI+ RH + ++E + +L ++MDMA+LVE+QGE++D IE V +AV V+ +
Sbjct: 2 SALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVS 61
Query: 266 ALQNAKK 272
+ A K
Sbjct: 62 DTKKAVK 68
>pdb|3RK2|B Chain B, Truncated Snare Complex
pdb|3RK2|F Chain F, Truncated Snare Complex
pdb|3RK3|B Chain B, Truncated Snare Complex With Complexin
pdb|3RL0|B Chain B, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|F Chain F, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|J Chain J, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|N Chain N, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|R Chain R, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|V Chain V, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|Z Chain Z, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|DD Chain d, Truncated Snare Complex With Complexin (P1)
Length = 65
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 40/60 (66%)
Query: 206 NTLEEIQERHDAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNVQSGTT 265
+ L EI+ RH + ++E + +L ++MDMA+LVE+QGE++D IE V +AV V+ +
Sbjct: 2 SALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVS 61
>pdb|1KIL|B Chain B, Three-Dimensional Structure Of The ComplexinSNARE COMPLEX
Length = 62
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 40/60 (66%)
Query: 206 NTLEEIQERHDAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNVQSGTT 265
+ L EI+ RH + ++E + +L ++MDMA+LVE+QGE++D IE V +AV V+ +
Sbjct: 2 SALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVS 61
>pdb|1GL2|B Chain B, Crystal Structure Of An Endosomal Snare Core Complex
Length = 65
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 39/60 (65%)
Query: 211 IQERHDAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNVQSGTTALQNA 270
+ ER +++++E ++D+ +I+ D+ +++ QG+++D+IE+ V +A +VQ L A
Sbjct: 4 MHERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSRA 63
>pdb|3B5N|B Chain B, Structure Of The Yeast Plasma Membrane Snare Complex
pdb|3B5N|F Chain F, Structure Of The Yeast Plasma Membrane Snare Complex
pdb|3B5N|J Chain J, Structure Of The Yeast Plasma Membrane Snare Complex
Length = 69
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%)
Query: 207 TLEEIQERHDAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNVQSGT 264
L E+Q RH + ++EK + +L Q++ DM LV Q E +D I+ V +A +V+ G
Sbjct: 1 ALAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGV 58
>pdb|1FIO|A Chain A, Crystal Structure Of Yeast T-Snare Protein Sso1
Length = 196
Score = 34.7 bits (78), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 176 EETIDHLIETGNSEQIFQKAIQEQGR-GQVLNTLEEIQERHDAVKEIEKKLLDLQQIYMD 234
E+ ++ I +QIF +A+ R G+ L E+Q RH + ++EK + +L Q++ D
Sbjct: 128 EDEVEAAISDVGGQQIFSQALLNANRRGEAKTALAEVQARHQELLKLEKSMAELTQLFND 187
Query: 235 MAVLV 239
M LV
Sbjct: 188 MEELV 192
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.309 0.125 0.333
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,387,588
Number of Sequences: 62578
Number of extensions: 195510
Number of successful extensions: 536
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 521
Number of HSP's gapped (non-prelim): 20
length of query: 308
length of database: 14,973,337
effective HSP length: 99
effective length of query: 209
effective length of database: 8,778,115
effective search space: 1834626035
effective search space used: 1834626035
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 51 (24.3 bits)