Query 038457
Match_columns 308
No_of_seqs 163 out of 1359
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 11:15:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038457.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038457hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0810 SNARE protein Syntaxin 100.0 4.7E-56 1E-60 401.6 33.9 291 1-305 1-295 (297)
2 COG5074 t-SNARE complex subuni 100.0 7.7E-39 1.7E-43 271.7 28.9 254 39-306 21-277 (280)
3 KOG0809 SNARE protein TLG2/Syn 100.0 6.7E-36 1.5E-40 262.8 24.3 250 34-299 52-301 (305)
4 KOG0811 SNARE protein PEP12/VA 100.0 4.4E-32 9.6E-37 241.5 29.5 248 36-303 14-267 (269)
5 COG5325 t-SNARE complex subuni 99.9 4E-23 8.8E-28 180.9 27.3 247 33-300 28-279 (283)
6 KOG0812 SNARE protein SED5/Syn 99.9 3E-19 6.6E-24 156.9 27.1 247 32-296 34-306 (311)
7 cd00179 SynN Syntaxin N-termin 99.9 2.3E-20 5E-25 155.3 19.2 149 38-193 1-149 (151)
8 smart00503 SynN Syntaxin N-ter 99.6 4.4E-14 9.5E-19 112.2 15.6 116 37-159 2-117 (117)
9 PF05739 SNARE: SNARE domain; 99.6 3.7E-14 8.1E-19 100.3 10.4 63 213-275 1-63 (63)
10 PF00804 Syntaxin: Syntaxin; 99.5 2E-12 4.2E-17 100.0 13.6 103 37-144 1-103 (103)
11 cd00193 t_SNARE Soluble NSF (N 99.4 9E-13 2E-17 91.9 8.3 59 212-270 2-60 (60)
12 smart00397 t_SNARE Helical reg 99.3 2.9E-11 6.3E-16 85.8 9.3 63 208-270 4-66 (66)
13 KOG3202 SNARE protein TLG1/Syn 98.9 4.1E-06 8.9E-11 73.9 27.2 225 40-297 7-232 (235)
14 KOG3894 SNARE protein Syntaxin 98.6 4.3E-05 9.4E-10 69.2 24.8 88 208-295 224-311 (316)
15 PF14523 Syntaxin_2: Syntaxin- 98.5 2.9E-06 6.4E-11 65.5 13.2 99 48-159 1-99 (102)
16 KOG0860 Synaptobrevin/VAMP-lik 98.1 0.00011 2.4E-09 57.2 11.9 84 215-300 28-114 (116)
17 PF00957 Synaptobrevin: Synapt 97.9 0.00037 8E-09 52.5 12.3 47 216-262 3-49 (89)
18 KOG3385 V-SNARE [Intracellular 97.6 0.00072 1.6E-08 52.5 9.0 80 215-296 35-114 (118)
19 COG5074 t-SNARE complex subuni 96.9 0.22 4.8E-06 43.7 18.3 89 210-300 186-276 (280)
20 PF09753 Use1: Membrane fusion 96.7 0.03 6.6E-07 50.4 11.8 52 216-270 170-221 (251)
21 KOG0810 SNARE protein Syntaxin 96.6 0.55 1.2E-05 43.3 26.1 67 206-272 203-269 (297)
22 KOG0811 SNARE protein PEP12/VA 96.3 0.81 1.8E-05 41.5 25.4 87 208-297 179-265 (269)
23 KOG1666 V-SNARE [Intracellular 95.8 1.2 2.5E-05 38.7 23.5 58 238-296 157-214 (220)
24 PF05478 Prominin: Prominin; 94.9 6 0.00013 41.7 26.5 56 218-275 359-414 (806)
25 COG5325 t-SNARE complex subuni 93.7 5.2 0.00011 36.2 27.1 87 208-298 194-280 (283)
26 KOG3065 SNAP-25 (synaptosome-a 93.0 0.49 1.1E-05 43.0 7.9 55 215-269 217-271 (273)
27 PF09753 Use1: Membrane fusion 92.3 3.8 8.2E-05 36.8 12.9 83 208-293 154-241 (251)
28 PF00957 Synaptobrevin: Synapt 89.0 7.6 0.00017 28.8 12.5 24 205-228 20-43 (89)
29 PF03908 Sec20: Sec20; InterP 88.7 8.5 0.00018 28.9 12.1 42 241-282 33-74 (92)
30 PF12911 OppC_N: N-terminal TM 83.3 3.1 6.8E-05 27.9 4.7 34 270-303 8-41 (56)
31 PRK10884 SH3 domain-containing 82.8 32 0.00069 30.0 13.8 40 230-269 118-157 (206)
32 KOG0859 Synaptobrevin/VAMP-lik 82.7 2.5 5.5E-05 36.3 4.8 55 216-273 125-179 (217)
33 KOG0860 Synaptobrevin/VAMP-lik 81.4 7.7 0.00017 30.5 6.7 15 279-293 96-110 (116)
34 PF04505 Dispanin: Interferon- 79.8 1.1 2.5E-05 33.0 1.6 34 261-294 47-80 (82)
35 PF10717 ODV-E18: Occlusion-de 79.4 2.8 6E-05 30.8 3.4 9 297-305 40-48 (85)
36 KOG0809 SNARE protein TLG2/Syn 78.9 53 0.0012 30.2 21.5 234 38-297 63-302 (305)
37 PF03904 DUF334: Domain of unk 77.9 49 0.0011 29.2 13.3 48 252-299 121-168 (230)
38 PF10779 XhlA: Haemolysin XhlA 77.0 24 0.00051 25.1 9.5 43 242-288 18-60 (71)
39 PF05957 DUF883: Bacterial pro 76.5 29 0.00063 25.9 11.8 52 246-297 33-91 (94)
40 KOG3251 Golgi SNAP receptor co 74.8 58 0.0013 28.5 24.0 56 239-295 152-207 (213)
41 PF02346 Vac_Fusion: Chordopox 73.8 22 0.00048 24.3 6.4 44 217-260 2-45 (57)
42 PF03915 AIP3: Actin interacti 72.2 1E+02 0.0022 30.1 16.9 120 82-244 208-327 (424)
43 PHA02844 putative transmembran 71.9 6.5 0.00014 28.2 3.6 20 278-297 46-65 (75)
44 PF09889 DUF2116: Uncharacteri 71.7 12 0.00027 25.8 4.9 18 280-297 37-54 (59)
45 COG4575 ElaB Uncharacterized c 70.4 47 0.001 25.6 10.0 21 277-297 81-101 (104)
46 PF10717 ODV-E18: Occlusion-de 70.1 5.3 0.00012 29.4 2.9 20 280-299 27-46 (85)
47 PF11166 DUF2951: Protein of u 68.8 48 0.001 25.1 11.5 42 216-257 11-52 (98)
48 KOG2678 Predicted membrane pro 68.7 83 0.0018 27.8 12.6 52 216-270 158-209 (244)
49 PHA02975 hypothetical protein; 68.4 6.1 0.00013 27.9 2.8 22 275-296 39-60 (69)
50 PRK14762 membrane protein; Pro 67.6 10 0.00022 21.2 3.0 17 283-299 6-22 (27)
51 PRK08307 stage III sporulation 67.5 18 0.00039 30.5 6.2 31 264-294 138-169 (171)
52 KOG0994 Extracellular matrix g 67.1 2.1E+02 0.0045 31.7 24.0 34 36-69 1422-1455(1758)
53 TIGR02833 spore_III_AB stage I 66.0 20 0.00043 30.2 6.2 30 265-294 138-168 (170)
54 PHA03054 IMV membrane protein; 65.0 9.5 0.00021 27.1 3.2 7 280-286 48-54 (72)
55 PRK10404 hypothetical protein; 64.9 61 0.0013 24.8 10.9 50 246-296 40-97 (101)
56 PHA02819 hypothetical protein; 64.8 9.3 0.0002 27.2 3.2 7 280-286 46-52 (71)
57 PF00435 Spectrin: Spectrin re 64.1 52 0.0011 23.8 9.9 68 36-104 34-101 (105)
58 PF09548 Spore_III_AB: Stage I 63.9 24 0.00051 29.7 6.2 30 265-294 138-168 (170)
59 PF06143 Baculo_11_kDa: Baculo 62.9 10 0.00022 28.1 3.2 7 265-271 20-26 (84)
60 PF00523 Fusion_gly: Fusion gl 62.5 12 0.00025 37.1 4.6 34 245-279 433-466 (490)
61 PF05399 EVI2A: Ectropic viral 62.3 8.3 0.00018 33.5 3.1 18 280-297 131-148 (227)
62 PF06072 Herpes_US9: Alphaherp 61.3 20 0.00044 24.6 4.2 13 262-274 10-22 (60)
63 PRK10132 hypothetical protein; 60.6 78 0.0017 24.6 11.4 21 276-296 83-103 (108)
64 PRK10884 SH3 domain-containing 60.0 1.2E+02 0.0026 26.5 13.4 52 250-303 145-197 (206)
65 PF14575 EphA2_TM: Ephrin type 59.7 15 0.00033 26.5 3.7 21 281-301 2-22 (75)
66 PF04102 SlyX: SlyX; InterPro 58.9 61 0.0013 22.9 6.9 48 216-263 4-51 (69)
67 PRK04325 hypothetical protein; 58.7 66 0.0014 23.1 8.2 45 218-262 11-55 (74)
68 PF14992 TMCO5: TMCO5 family 57.9 1.5E+02 0.0033 27.1 12.7 54 208-261 122-175 (280)
69 PF09177 Syntaxin-6_N: Syntaxi 57.9 78 0.0017 23.8 11.8 61 41-111 3-63 (97)
70 PRK13865 type IV secretion sys 57.5 38 0.00081 30.1 6.6 25 280-304 41-65 (229)
71 PF10267 Tmemb_cc2: Predicted 57.2 1.9E+02 0.0041 27.9 13.1 32 240-271 294-326 (395)
72 cd00193 t_SNARE Soluble NSF (N 56.1 55 0.0012 21.4 8.3 55 220-274 3-57 (60)
73 PHA02414 hypothetical protein 56.0 88 0.0019 23.8 9.6 49 217-269 30-78 (111)
74 PF11239 DUF3040: Protein of u 55.7 19 0.00041 26.4 3.7 15 245-259 10-24 (82)
75 PF12669 P12: Virus attachment 55.7 10 0.00022 26.0 2.1 11 296-306 17-27 (58)
76 PF06789 UPF0258: Uncharacteri 54.7 2.8 6.1E-05 34.4 -0.9 14 263-276 115-128 (159)
77 PF05531 NPV_P10: Nucleopolyhe 54.1 82 0.0018 22.8 6.9 51 46-98 7-57 (75)
78 PHA02675 ORF104 fusion protein 52.9 91 0.002 23.0 6.7 39 221-259 35-73 (90)
79 KOG3065 SNAP-25 (synaptosome-a 51.5 41 0.00089 30.7 5.9 37 233-269 96-132 (273)
80 PF10267 Tmemb_cc2: Predicted 50.6 2.4E+02 0.0052 27.2 13.8 34 34-67 210-243 (395)
81 PHA02819 hypothetical protein; 48.4 21 0.00045 25.4 2.7 28 272-299 35-62 (71)
82 PF06024 DUF912: Nucleopolyhed 48.0 14 0.0003 28.4 2.0 24 280-303 61-84 (101)
83 KOG1666 V-SNARE [Intracellular 47.4 62 0.0013 28.3 6.0 24 87-110 36-59 (220)
84 PRK10573 type IV pilin biogene 47.3 2.1E+02 0.0045 27.3 10.5 39 221-259 111-149 (399)
85 PF01102 Glycophorin_A: Glycop 46.9 25 0.00055 28.0 3.4 20 280-299 68-87 (122)
86 PF14812 PBP1_TM: Transmembran 46.7 1.1 2.4E-05 32.9 -4.0 13 274-286 61-73 (81)
87 PF12911 OppC_N: N-terminal TM 46.4 20 0.00044 23.8 2.5 21 284-304 18-38 (56)
88 PF00523 Fusion_gly: Fusion gl 46.0 17 0.00036 36.0 2.7 27 244-270 438-464 (490)
89 PF00804 Syntaxin: Syntaxin; 44.8 66 0.0014 23.6 5.4 23 88-110 43-65 (103)
90 PRK00295 hypothetical protein; 44.7 1.1E+02 0.0024 21.6 7.8 45 218-262 7-51 (68)
91 PF11598 COMP: Cartilage oligo 44.7 55 0.0012 21.3 4.1 24 220-243 5-28 (45)
92 PHA02650 hypothetical protein; 44.5 25 0.00054 25.6 2.7 22 276-297 42-63 (81)
93 PHA02844 putative transmembran 44.4 26 0.00056 25.2 2.7 28 273-300 38-65 (75)
94 PF09177 Syntaxin-6_N: Syntaxi 43.4 1.4E+02 0.003 22.4 7.1 21 90-110 35-55 (97)
95 PF05546 She9_MDM33: She9 / Md 42.8 2.3E+02 0.005 24.7 19.7 28 278-305 151-178 (207)
96 PF09125 COX2-transmemb: Cytoc 42.6 46 0.001 20.5 3.2 14 278-291 14-27 (38)
97 PF06789 UPF0258: Uncharacteri 41.4 16 0.00035 30.1 1.5 30 270-299 125-154 (159)
98 COG4640 Predicted membrane pro 41.3 44 0.00096 32.0 4.6 22 282-303 54-75 (465)
99 KOG3202 SNARE protein TLG1/Syn 41.1 1.9E+02 0.0041 25.8 8.3 20 238-257 146-165 (235)
100 PHA03240 envelope glycoprotein 41.0 27 0.00059 30.5 2.9 21 279-299 211-231 (258)
101 TIGR01149 mtrG N5-methyltetrah 40.5 1.3E+02 0.0029 21.3 6.3 12 245-256 20-31 (70)
102 COG4068 Uncharacterized protei 40.4 39 0.00084 23.2 3.0 11 264-274 30-40 (64)
103 smart00806 AIP3 Actin interact 40.2 3.6E+02 0.0078 26.3 18.8 27 126-152 298-324 (426)
104 PF08412 Ion_trans_N: Ion tran 39.7 89 0.0019 22.7 5.0 24 281-304 48-71 (77)
105 PRK00736 hypothetical protein; 39.4 1.4E+02 0.0029 21.1 7.8 45 218-262 7-51 (68)
106 TIGR00847 ccoS cytochrome oxid 39.4 44 0.00096 22.3 3.1 25 282-306 5-29 (51)
107 KOG0972 Huntingtin interacting 39.3 3.2E+02 0.0069 25.3 10.6 28 83-110 230-257 (384)
108 PF07438 DUF1514: Protein of u 38.9 29 0.00062 24.3 2.2 16 282-297 2-17 (66)
109 PRK10803 tol-pal system protei 38.7 1.9E+02 0.0042 26.1 8.3 24 78-101 70-93 (263)
110 PF12352 V-SNARE_C: Snare regi 37.9 1.3E+02 0.0028 20.5 10.1 51 221-271 13-63 (66)
111 COG3736 VirB8 Type IV secretor 37.8 90 0.0019 27.9 5.8 23 280-302 44-66 (239)
112 PF05399 EVI2A: Ectropic viral 37.6 34 0.00073 29.9 2.9 22 278-300 126-147 (227)
113 PF03597 CcoS: Cytochrome oxid 37.5 47 0.001 21.5 2.9 24 283-306 5-28 (45)
114 PF10661 EssA: WXG100 protein 37.4 47 0.001 27.3 3.7 24 274-297 113-136 (145)
115 PF15106 TMEM156: TMEM156 prot 37.4 37 0.0008 29.6 3.1 25 276-301 172-196 (226)
116 KOG1693 emp24/gp25L/p24 family 37.1 1.6E+02 0.0034 25.6 6.9 18 212-229 127-144 (209)
117 PRK02793 phi X174 lysis protei 37.1 1.5E+02 0.0033 21.1 7.8 47 216-262 8-54 (72)
118 PF10027 DUF2269: Predicted in 36.8 43 0.00093 27.3 3.5 32 271-302 119-150 (150)
119 PHA03395 p10 fibrous body prot 36.5 1.8E+02 0.0039 21.7 6.6 48 47-96 8-55 (87)
120 COG2966 Uncharacterized conser 35.5 58 0.0013 29.3 4.3 47 247-293 93-139 (250)
121 PF15102 TMEM154: TMEM154 prot 35.5 14 0.00031 30.3 0.3 7 280-286 58-64 (146)
122 PHA03054 IMV membrane protein; 35.1 51 0.0011 23.5 3.0 24 276-299 41-64 (72)
123 PF05739 SNARE: SNARE domain; 35.1 1.4E+02 0.003 20.0 8.5 52 223-274 4-55 (63)
124 PTZ00208 65 kDa invariant surf 34.8 38 0.00083 32.4 3.1 18 46-63 69-86 (436)
125 PRK13872 conjugal transfer pro 34.6 1.1E+02 0.0023 27.0 5.8 6 297-302 59-64 (228)
126 TIGR01834 PHA_synth_III_E poly 34.3 3.4E+02 0.0074 25.4 9.2 18 35-52 231-248 (320)
127 PF06143 Baculo_11_kDa: Baculo 34.2 84 0.0018 23.3 4.2 16 281-296 40-55 (84)
128 PF07851 TMPIT: TMPIT-like pro 34.0 4.1E+02 0.0088 25.0 10.3 22 48-69 2-23 (330)
129 PF04906 Tweety: Tweety; Inte 33.7 1.7E+02 0.0038 28.2 7.5 16 278-293 185-200 (406)
130 smart00502 BBC B-Box C-termina 33.7 2.1E+02 0.0046 21.6 8.6 64 206-269 21-86 (127)
131 PF10749 DUF2534: Protein of u 33.4 54 0.0012 24.1 3.0 7 277-283 12-18 (85)
132 COG3197 FixS Uncharacterized p 33.2 39 0.00084 23.1 2.1 24 283-306 6-29 (58)
133 PF10814 DUF2562: Protein of u 33.1 2E+02 0.0044 22.9 6.4 40 249-288 60-100 (133)
134 PF12606 RELT: Tumour necrosis 33.0 71 0.0015 21.2 3.3 17 285-301 9-25 (50)
135 PRK02119 hypothetical protein; 32.3 1.9E+02 0.0041 20.7 8.0 47 216-262 9-55 (73)
136 PRK04406 hypothetical protein; 32.2 1.9E+02 0.0042 20.8 7.7 46 216-261 11-56 (75)
137 PF05667 DUF812: Protein of un 32.0 5.7E+02 0.012 26.2 20.0 38 214-251 545-582 (594)
138 COG5278 Predicted periplasmic 31.3 3.6E+02 0.0077 23.6 10.4 11 213-223 105-115 (207)
139 smart00397 t_SNARE Helical reg 31.0 1.6E+02 0.0035 19.4 9.6 57 217-273 6-62 (66)
140 KOG3850 Predicted membrane pro 30.9 4.9E+02 0.011 25.0 18.4 19 89-107 100-118 (455)
141 PF03653 UPF0093: Uncharacteri 30.8 44 0.00094 27.4 2.5 26 278-303 122-147 (147)
142 PF00517 GP41: Retroviral enve 30.4 1.6E+02 0.0035 25.5 6.1 15 214-228 106-120 (204)
143 PF00482 T2SF: Type II secreti 30.3 1.8E+02 0.004 21.5 6.0 6 221-226 48-53 (124)
144 PHA02673 ORF109 EEV glycoprote 30.3 56 0.0012 27.2 3.0 13 269-281 20-32 (161)
145 COG4736 CcoQ Cbb3-type cytochr 29.9 65 0.0014 22.3 2.8 24 283-306 13-36 (60)
146 COG4068 Uncharacterized protei 28.8 1.4E+02 0.003 20.6 4.1 8 275-282 38-45 (64)
147 PF08372 PRT_C: Plant phosphor 28.6 3.3E+02 0.0072 22.6 7.4 18 210-227 56-73 (156)
148 TIGR00701 conserved hypothetic 28.5 45 0.00097 27.3 2.2 27 278-304 116-142 (142)
149 PRK00523 hypothetical protein; 28.4 85 0.0018 22.5 3.3 18 282-299 3-20 (72)
150 KOG2927 Membrane component of 27.8 43 0.00092 31.6 2.1 22 278-299 188-209 (372)
151 PF10498 IFT57: Intra-flagella 27.1 5.5E+02 0.012 24.4 13.6 16 37-52 192-207 (359)
152 PF13198 DUF4014: Protein of u 27.1 58 0.0013 23.2 2.2 8 272-279 8-15 (72)
153 TIGR02120 GspF general secreti 26.8 5.5E+02 0.012 24.3 10.7 42 221-262 113-154 (399)
154 PTZ00478 Sec superfamily; Prov 26.5 2.1E+02 0.0045 21.1 5.1 27 247-273 14-40 (81)
155 PF01601 Corona_S2: Coronaviru 26.2 3.7E+02 0.008 27.4 8.4 66 39-109 255-320 (610)
156 COG3206 GumC Uncharacterized p 26.1 6.2E+02 0.013 24.6 18.1 29 207-235 364-392 (458)
157 TIGR02120 GspF general secreti 26.0 3.2E+02 0.0069 26.0 7.9 31 231-261 325-355 (399)
158 PF12166 DUF3595: Protein of u 25.8 53 0.0012 31.7 2.6 22 280-301 63-84 (422)
159 PRK14861 tatA twin arginine tr 25.7 49 0.0011 22.9 1.6 6 297-302 18-23 (61)
160 PF09164 VitD-bind_III: Vitami 25.7 1.4E+02 0.003 21.1 3.8 28 157-185 13-40 (68)
161 PRK09400 secE preprotein trans 25.6 2.3E+02 0.005 19.6 5.1 22 252-273 6-27 (61)
162 PF10669 Phage_Gp23: Protein g 25.4 89 0.0019 23.8 3.1 16 286-301 20-35 (121)
163 PF06738 DUF1212: Protein of u 25.3 1.1E+02 0.0024 25.8 4.2 31 254-284 78-108 (193)
164 PF13937 DUF4212: Domain of un 25.1 91 0.002 22.9 3.1 19 269-287 2-20 (81)
165 PF13807 GNVR: G-rich domain o 25.0 1E+02 0.0022 22.2 3.4 19 218-236 6-24 (82)
166 TIGR02302 aProt_lowcomp conser 24.8 6.3E+02 0.014 27.1 10.2 21 228-248 621-641 (851)
167 PF06388 DUF1075: Protein of u 24.8 1.2E+02 0.0025 25.0 3.9 25 276-300 90-114 (146)
168 PRK13673 hypothetical protein; 24.7 82 0.0018 24.9 2.9 19 214-232 38-56 (118)
169 COG1459 PulF Type II secretory 24.4 1.6E+02 0.0034 28.5 5.4 41 221-261 110-150 (397)
170 PF11337 DUF3139: Protein of u 24.4 64 0.0014 23.7 2.2 18 280-297 8-25 (85)
171 smart00150 SPEC Spectrin repea 24.2 2.6E+02 0.0057 19.7 8.6 54 34-88 29-82 (101)
172 PF10864 DUF2663: Protein of u 24.2 1.4E+02 0.003 24.1 4.2 32 268-299 11-42 (130)
173 COG3462 Predicted membrane pro 24.1 1.1E+02 0.0024 23.8 3.4 21 286-306 58-78 (117)
174 COG1315 Uncharacterized conser 23.9 5.1E+02 0.011 25.9 8.7 74 39-112 406-486 (543)
175 PHA03046 Hypothetical protein; 23.8 3.9E+02 0.0085 21.5 7.0 43 216-258 84-126 (142)
176 TIGR03185 DNA_S_dndD DNA sulfu 23.7 8.1E+02 0.018 25.1 13.9 43 52-94 397-439 (650)
177 KOG0812 SNARE protein SED5/Syn 23.6 5.9E+02 0.013 23.5 12.6 57 209-268 230-286 (311)
178 PF10496 Syntaxin-18_N: SNARE- 23.5 1.7E+02 0.0037 21.3 4.4 34 35-68 35-68 (87)
179 PF05008 V-SNARE: Vesicle tran 23.4 2.7E+02 0.0059 19.6 8.2 29 212-240 21-49 (79)
180 COG1459 PulF Type II secretory 23.4 4.1E+02 0.0089 25.6 8.1 40 235-274 110-149 (397)
181 PRK14857 tatA twin arginine tr 23.3 54 0.0012 24.6 1.6 6 298-303 20-25 (90)
182 PF09371 Tex_N: Tex-like prote 22.7 5E+02 0.011 22.3 8.4 71 182-260 18-89 (193)
183 PF09788 Tmemb_55A: Transmembr 22.6 81 0.0018 28.4 2.8 25 278-302 195-219 (256)
184 PTZ00370 STEVOR; Provisional 22.5 63 0.0014 29.6 2.2 29 80-108 58-86 (296)
185 COG2443 Sss1 Preprotein transl 22.5 2.8E+02 0.0062 19.5 5.4 25 249-273 4-28 (65)
186 KOG0859 Synaptobrevin/VAMP-lik 22.3 2.2E+02 0.0048 24.7 5.3 10 242-251 138-147 (217)
187 PF06657 Cep57_MT_bd: Centroso 22.3 3.1E+02 0.0068 19.9 9.8 60 35-94 9-68 (79)
188 PF03935 SKN1: Beta-glucan syn 22.1 74 0.0016 31.6 2.7 24 280-303 45-68 (504)
189 PF07412 Geminin: Geminin; In 22.1 4.8E+02 0.01 22.7 7.3 62 188-250 105-166 (200)
190 smart00806 AIP3 Actin interact 22.1 7.5E+02 0.016 24.2 21.8 60 81-151 211-270 (426)
191 PF13131 DUF3951: Protein of u 22.1 1.4E+02 0.003 19.9 3.1 16 282-297 5-20 (53)
192 PF04888 SseC: Secretion syste 22.1 2.6E+02 0.0057 25.5 6.3 41 254-294 33-75 (306)
193 PF07106 TBPIP: Tat binding pr 22.0 4.6E+02 0.0099 21.6 9.8 68 34-108 70-137 (169)
194 PF07544 Med9: RNA polymerase 21.9 1.8E+02 0.0039 21.2 4.2 29 211-239 54-82 (83)
195 COG1314 SecG Preprotein transl 21.6 1.1E+02 0.0025 22.7 3.0 14 289-302 10-23 (86)
196 PHA02849 putative transmembran 21.5 1.1E+02 0.0024 22.2 2.8 24 280-303 17-40 (82)
197 PF09712 PHA_synth_III_E: Poly 21.5 4.2E+02 0.0091 24.4 7.4 18 36-53 215-232 (293)
198 PRK09458 pspB phage shock prot 21.5 99 0.0022 22.4 2.6 16 284-299 5-20 (75)
199 KOG4552 Vitamin-D-receptor int 21.4 3.1E+02 0.0068 24.0 6.0 40 232-271 59-101 (272)
200 PF01519 DUF16: Protein of unk 21.1 3.9E+02 0.0085 20.6 7.8 41 217-257 54-94 (102)
201 PF11044 TMEMspv1-c74-12: Plec 21.1 1.7E+02 0.0037 18.9 3.3 14 280-293 4-17 (49)
202 PF06422 PDR_CDR: CDR ABC tran 21.0 1.6E+02 0.0034 22.5 3.9 31 262-293 32-62 (103)
203 PRK14710 hypothetical protein; 21.0 1.2E+02 0.0026 21.6 2.8 14 280-293 10-23 (86)
204 PHA02657 hypothetical protein; 20.8 1.1E+02 0.0025 22.6 2.8 24 280-303 27-50 (95)
205 PF06667 PspB: Phage shock pro 20.8 1.1E+02 0.0024 22.1 2.8 15 285-299 6-20 (75)
206 COG3352 FlaC Putative archaeal 20.7 4.9E+02 0.011 21.6 8.8 59 211-269 81-140 (157)
207 PF12022 DUF3510: Domain of un 20.5 3.5E+02 0.0076 21.3 5.9 32 37-68 71-102 (125)
208 PF00429 TLV_coat: ENV polypro 20.4 2.6E+02 0.0056 28.4 6.3 35 211-245 437-475 (561)
No 1
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.7e-56 Score=401.63 Aligned_cols=291 Identities=40% Similarity=0.635 Sum_probs=258.0
Q ss_pred CcchhhhhhccccCCCCCCCcCcccC----CCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCChh
Q 038457 1 MNDLLTDSFVSDARGQPSRDNDIEMG----TRVPRSSSDMGMEGFNKQIQEIEKQVDKLSALLKKLKDANEESKSVTKAS 76 (308)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~e~~----~~~~~~~~~~~~~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~ 76 (308)
|||+++.+|-++. ..|.|++ .. .+...+.+|+.||..|++|+..|..+...+.+|..+|...++ .+.
T Consensus 1 M~d~~~~~~~~~~------~~~~e~~~~~~~~-~~~~~~~~l~~Ff~~ve~Ir~~i~~l~~~~~~l~~~hs~~l~--~~~ 71 (297)
T KOG0810|consen 1 MNDRLSELLARSV------SEDNELDDVEGHT-GSADGDSNLEEFFEDVEEIRDDIEKLDEDVEKLQKLHSKSLH--SPN 71 (297)
T ss_pred CccccHHHHcCch------hhccccccccccc-CCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhc--ccc
Confidence 9999999995443 3333333 21 123334889999999999999999999999999999976654 445
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038457 77 EMKAIKKRMEKDVDEVGKIARNVKAKIEAINRENLANRQKPGCEKGTSVDRSRMNVTNALTKRFKELMTEFQTLRQRIQE 156 (308)
Q Consensus 77 ~~~~l~~~i~~~~~~i~~~~~~ik~~l~~l~~~~~~~~~~~~~~~~~~~~r~r~~~~~~L~~~f~~~~~~f~~~q~~~~~ 156 (308)
..++++++|+.++.++.+.++.|+.+|+.+++++......+ +.++..|+|++++..++++|.++|.+|+.+|.+|++
T Consensus 72 ~~~~~k~~l~~~~~~~~~~a~~Ik~kL~~~e~~~~~~~~~~---~~~~~~r~rrtq~~~~~kkf~~~M~~f~~~~~~~r~ 148 (297)
T KOG0810|consen 72 ADKELKRKLESLVDEIRRRARKIKTKLKALEKENEADETQN---RSSAGLRTRRTQTSALSKKLKELMNEFNRTQSKYRE 148 (297)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC---CCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999987654322 335678999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCCCCChHHHHHHHhcCCchHHHHHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038457 157 EYREVVERRVITVTGTRPDEETIDHLIETGNSEQIFQKAIQEQGRGQVLNTLEEIQERHDAVKEIEKKLLDLQQIYMDMA 236 (308)
Q Consensus 157 ~~k~~~~r~~~~v~~~~~~~e~i~~~~~~~~~~~~~q~~l~~~~~~q~~~~l~~i~~R~~eI~~ie~~I~EL~~lF~dla 236 (308)
+|++++.|+|.++.+..++++++++++++|+++.|++.++. ++++.++++.++++||.+|++||++|.|||+||.|||
T Consensus 149 ~~k~~i~Rql~i~~~~~~~de~ie~~ie~g~~~~f~~~~i~--~~~~~~~~l~Eiq~Rh~~ik~LEksi~ELhqlFlDMa 226 (297)
T KOG0810|consen 149 EYKERIQRQLFIVGGEETTDEEIEEMIESGGSEVFTQKAIQ--DRGQAKQTLAEIQERHDEIKKLEKSIRELHQLFLDMA 226 (297)
T ss_pred HHHHHHHHHHhhhCCCcCChHHHHHHHHCCChHHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988877669999999999999999889888776 5667789999999999999999999999999999999
Q ss_pred HHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhccccC
Q 038457 237 VLVEAQGEILDNIESQVSNAVTNVQSGTTALQNAKKHQKSSRKWMCIAIIILLIIVAVIVVGVIKPWKS 305 (308)
Q Consensus 237 ~LV~~Qge~iD~Ie~Nv~~a~~~v~~g~~~L~kA~~~qkk~rk~~c~~i~iviii~~iii~~i~~~~~~ 305 (308)
+||+.||+|||+||+||.+|.+||++|..++++|.+||+++|||+||+|++++|++++++++++.||..
T Consensus 227 ~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~qkkaRK~k~i~ii~~iii~~v~v~~i~~~~~~ 295 (297)
T KOG0810|consen 227 VLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVKYQKKARKWKIIIIIILIIIIVVLVVVIVVPLVL 295 (297)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhceeeeehHHHHHHHHHhhhhcccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999853
No 2
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=100.00 E-value=7.7e-39 Score=271.67 Aligned_cols=254 Identities=24% Similarity=0.416 Sum_probs=223.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCChhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHhhccCCC
Q 038457 39 EGFNKQIQEIEKQVDKLSALLKKLKDANEESKSVTKASEMKAIKKRMEKDVDEVGKIARNVKAKIEAINRENLANRQKPG 118 (308)
Q Consensus 39 ~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~ik~~l~~l~~~~~~~~~~~~ 118 (308)
..|...+..|+..++.+...+.++..+|+..+.-.+......++..|+..+.++..+...+|..++..+...
T Consensus 21 ~~f~~~i~si~~n~s~~e~~i~qi~~~h~d~L~Ev~e~~~~~~~~~ldnf~s~t~~Lq~~~k~di~~~e~~~-------- 92 (280)
T COG5074 21 VTFMNKILSINKNLSVYEKEINQIDNLHKDLLTEVFEEQSRKLRRSLDNFSSQTTDLQRNLKKDIKSAERDG-------- 92 (280)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhcc--------
Confidence 456679999999999999999999999999998887777888999999999999999999999999877641
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCChHHHHHHHhcCCchHHHHHHHHH
Q 038457 119 CEKGTSVDRSRMNVTNALTKRFKELMTEFQTLRQRIQEEYREVVERRVITVTGTRPDEETIDHLIETGNSEQIFQKAIQE 198 (308)
Q Consensus 119 ~~~~~~~~r~r~~~~~~L~~~f~~~~~~f~~~q~~~~~~~k~~~~r~~~~v~~~~~~~e~i~~~~~~~~~~~~~q~~l~~ 198 (308)
-....++.|....+++|.+++++|+.++..|++.|+++.+|+| .+..|++|+++++..+.+.++.++|.++++.
T Consensus 93 -----ihl~~k~aQae~~r~Kf~~~I~~yr~i~~~yree~~e~~rrQy-~Ia~P~ATEdeve~aInd~nG~qvfsqalL~ 166 (280)
T COG5074 93 -----IHLANKQAQAENVRQKFLKLIQDYRIIDSNYREEEKEQARRQY-IIAQPEATEDEVEAAINDVNGQQVFSQALLN 166 (280)
T ss_pred -----cchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhh-hhcCCccchHHHHHHhcccchHHHHHHHHHh
Confidence 1123468888899999999999999999999999999998765 6667999999999999998888888887654
Q ss_pred -hhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 038457 199 -QGRGQVLNTLEEIQERHDAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNVQSGTTALQNAKKHQKSS 277 (308)
Q Consensus 199 -~~~~q~~~~l~~i~~R~~eI~~ie~~I~EL~~lF~dla~LV~~Qge~iD~Ie~Nv~~a~~~v~~g~~~L~kA~~~qkk~ 277 (308)
.+++.++.+|.+++.||.+|++||++|.||.+||+||+.||.+|.+++|-|+.|+..+.++|++|+.++.+|.+|.+++
T Consensus 167 anr~geAktaL~Evq~Rh~~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~AvksaRaa 246 (280)
T COG5074 167 ANRRGEAKTALAEVQARHQEIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVKSARAA 246 (280)
T ss_pred cCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHHHHHH
Confidence 5678889999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred c--chHHHHHHHHHHHHHHHHHHHhccccCC
Q 038457 278 R--KWMCIAIIILLIIVAVIVVGVIKPWKSG 306 (308)
Q Consensus 278 r--k~~c~~i~iviii~~iii~~i~~~~~~~ 306 (308)
| ||.||+||+++|++++.+++-+.||.-|
T Consensus 247 Rkkki~c~gI~~iii~viv~vv~~v~~~v~~ 277 (280)
T COG5074 247 RKKKIRCYGICFIIIIVIVVVVFKVVPFVVF 277 (280)
T ss_pred HhcceehhhhHHHHHHHHHHHHhcccchhhc
Confidence 8 5888888777666665555445566544
No 3
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.7e-36 Score=262.85 Aligned_cols=250 Identities=21% Similarity=0.311 Sum_probs=194.1
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCChhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHhh
Q 038457 34 SDMGMEGFNKQIQEIEKQVDKLSALLKKLKDANEESKSVTKASEMKAIKKRMEKDVDEVGKIARNVKAKIEAINRENLAN 113 (308)
Q Consensus 34 ~~~~~~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~ik~~l~~l~~~~~~~ 113 (308)
.+..+|.|.+.+++|+..+..++.++++|..+|.+.+ .++.++...-+..|+.++.+|+++++.|.+.|+.+.....
T Consensus 52 ~d~lpP~wvd~~~ev~~~l~rvrrk~~eLgk~~~Khl-~PsF~Dk~ede~~IE~ltq~Itqll~~cqk~iq~~~a~~n-- 128 (305)
T KOG0809|consen 52 EDGLPPAWVDVAEEVDYYLSRVRRKIDELGKAHAKHL-RPSFSDKREDEHEIEELTQEITQLLQKCQKLIQRLSASLN-- 128 (305)
T ss_pred ccCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--
Confidence 3456899999999999999999999999999999987 5666666666889999999999999999999998876421
Q ss_pred ccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCChHHHHHHHhcCCchHHHH
Q 038457 114 RQKPGCEKGTSVDRSRMNVTNALTKRFKELMTEFQTLRQRIQEEYREVVERRVITVTGTRPDEETIDHLIETGNSEQIFQ 193 (308)
Q Consensus 114 ~~~~~~~~~~~~~r~r~~~~~~L~~~f~~~~~~f~~~q~~~~~~~k~~~~r~~~~v~~~~~~~e~i~~~~~~~~~~~~~q 193 (308)
.+.+.+..+++|.+..++.+++.++.+|+..|..|-+..+.+-.+-. ..++..+..+..++...+..
T Consensus 129 ------~~~~~e~~~~~n~~~~la~~LQ~~s~~fR~~Qs~YLK~l~~~ee~~~-------~~e~~~~~~~~~~dd~d~~~ 195 (305)
T KOG0809|consen 129 ------QLSPSERLLRKNAQGYLALQLQTLSREFRGLQSKYLKRLRNREENSQ-------EYEDSLDNTVDLPDDEDFSD 195 (305)
T ss_pred ------CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhccc-------chhhhccccccCcchhhhhh
Confidence 11234567889999999999999999999998766655544433211 00111111122222222211
Q ss_pred HHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 038457 194 KAIQEQGRGQVLNTLEEIQERHDAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNVQSGTTALQNAKKH 273 (308)
Q Consensus 194 ~~l~~~~~~q~~~~l~~i~~R~~eI~~ie~~I~EL~~lF~dla~LV~~Qge~iD~Ie~Nv~~a~~~v~~g~~~L~kA~~~ 273 (308)
...++++.....++...+.+|++||.+|.+||.||++||+||+.||.+||.+||||||||+++..+|+.|.++|.||..|
T Consensus 196 ~~~qe~ql~~~e~~~~~~~erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KAe~y 275 (305)
T KOG0809|consen 196 RTFQEQQLMLFENNEEVVREREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKAERY 275 (305)
T ss_pred hhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHHHHH
Confidence 11111111222345667899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccchHHHHHHHHHHHHHHHHHHH
Q 038457 274 QKSSRKWMCIAIIILLIIVAVIVVGV 299 (308)
Q Consensus 274 qkk~rk~~c~~i~iviii~~iii~~i 299 (308)
||+++|++||++++++||++++++++
T Consensus 276 Qk~~~k~~~i~~L~l~ii~llvllil 301 (305)
T KOG0809|consen 276 QKRNKKMKVILMLTLLIIALLVLLIL 301 (305)
T ss_pred HhcCCceEehHHHHHHHHHHHHHHHh
Confidence 99999999999998888888777643
No 4
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.4e-32 Score=241.53 Aligned_cols=248 Identities=23% Similarity=0.337 Sum_probs=192.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCChhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHhhcc
Q 038457 36 MGMEGFNKQIQEIEKQVDKLSALLKKLKDANEESKSVTKASEMKAIKKRMEKDVDEVGKIARNVKAKIEAINRENLANRQ 115 (308)
Q Consensus 36 ~~~~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~ik~~l~~l~~~~~~~~~ 115 (308)
.....|...+.+|...|..+...+..|.+.+... +++.+..+++++++.....+.++++++...|+.+....
T Consensus 14 ~~~~~~~~l~~~i~~~i~~i~~~~~~l~r~~~~l---gt~~ds~~lr~kl~~~~~~~~~~vkdt~~~lke~~~~~----- 85 (269)
T KOG0811|consen 14 EEPFDFQQLAQEIAANIQRINQQVLSLLRFLNSL---GTKSDSPELRDKLHQERLNANQLVKDTSALLKEIDTLR----- 85 (269)
T ss_pred CCCCcHhHHHHHHHHHHHHHhHHHHHHHHHHHHc---CCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----
Confidence 3445789999999999999999999998888753 55667778999999999999999999999999987742
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhccCCCCC---hHHHHHHHhcCCchHH
Q 038457 116 KPGCEKGTSVDRSRMNVTNALTKRFKELMTEFQTLRQRIQEEYREV-VERRVITVTGTRPD---EETIDHLIETGNSEQI 191 (308)
Q Consensus 116 ~~~~~~~~~~~r~r~~~~~~L~~~f~~~~~~f~~~q~~~~~~~k~~-~~r~~~~v~~~~~~---~e~i~~~~~~~~~~~~ 191 (308)
...+.+..+.+...|.+.|..++++|+.+|.+..+..+.- +.| +...+ +++-+..-+.+.....
T Consensus 86 ------~~~~~~~~k~~~~kL~~ef~~~l~efq~vQrk~ae~ek~~~~a~------~s~~s~~~~~~~~~~~~~~~~~~~ 153 (269)
T KOG0811|consen 86 ------LESDLRQLKIQLDKLVDEFSAALKEFQKVQRKSAEREKIPMVAR------GSQNSQQLDEESPRVDELSNNGSQ 153 (269)
T ss_pred ------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccccccc------ccccchhhhhhhhhhhhhhccchh
Confidence 1345688999999999999999999999998887766511 111 11111 1111111111111111
Q ss_pred HHHHHHH--hhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 038457 192 FQKAIQE--QGRGQVLNTLEEIQERHDAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNVQSGTTALQN 269 (308)
Q Consensus 192 ~q~~l~~--~~~~q~~~~l~~i~~R~~eI~~ie~~I~EL~~lF~dla~LV~~Qge~iD~Ie~Nv~~a~~~v~~g~~~L~k 269 (308)
.+..+.. +....+...+..+++|.+.|.+||..|.||++||+||+.||++||++||+||+||++|.+||+.|+.+|.|
T Consensus 154 ~~~q~e~~~q~~e~~~~~~~~ieeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~k 233 (269)
T KOG0811|consen 154 SQQQLEEQAQDNEILEYQLDLIEEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRK 233 (269)
T ss_pred hhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111 11111223566789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcccchHHHHHHHHHHHHHHHHHHHhccc
Q 038457 270 AKKHQKSSRKWMCIAIIILLIIVAVIVVGVIKPW 303 (308)
Q Consensus 270 A~~~qkk~rk~~c~~i~iviii~~iii~~i~~~~ 303 (308)
|.+||+++|||.||+++|++++++++++.++...
T Consensus 234 A~~yq~~~~k~~~~ll~v~~~v~lii~l~i~~~~ 267 (269)
T KOG0811|consen 234 AAKYQRKARKKKCILLLVGGPVGLIIGLIIAGIA 267 (269)
T ss_pred HHHHHHHhcCchhhhhHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999998888776643
No 5
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=99.93 E-value=4e-23 Score=180.89 Aligned_cols=247 Identities=16% Similarity=0.246 Sum_probs=159.7
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCChhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHh
Q 038457 33 SSDMGMEGFNKQIQEIEKQVDKLSALLKKLKDANEESKSVTKASEMKAIKKRMEKDVDEVGKIARNVKAKIEAINRENLA 112 (308)
Q Consensus 33 ~~~~~~~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~ik~~l~~l~~~~~~ 112 (308)
+.+...|.|......+...+..+..++..+..-+.+... +.+++..+-.+.++.+...++.....|-+.++.......
T Consensus 28 e~~~l~p~~i~~~~~v~~~l~~vrr~~~~l~~~y~k~~~-p~f~~k~~k~~ei~~L~~kv~~~l~~~~ki~~~~~~~~~- 105 (283)
T COG5325 28 EDDALTPTFILSAASVDQELTAVRRSISRLGKVYAKHTE-PSFSDKSEKEDEIDELSKKVNQDLQRCEKILKTKYKNLQ- 105 (283)
T ss_pred hhhccchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhc-CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 336788999999999999999999999999887776543 333443333455666666565555555555543322211
Q ss_pred hccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhccCC-CCChHHHHHHHhcCCc
Q 038457 113 NRQKPGCEKGTSVDRSRMNVTNALTKRFKELMTEFQTLRQRIQEEYREVVERRV---ITVTGT-RPDEETIDHLIETGNS 188 (308)
Q Consensus 113 ~~~~~~~~~~~~~~r~r~~~~~~L~~~f~~~~~~f~~~q~~~~~~~k~~~~r~~---~~v~~~-~~~~e~i~~~~~~~~~ 188 (308)
+ ......|...+......++.+|++...-.+.+..+.. ....+. ...+++-+......+.
T Consensus 106 ----------s------~~~~~kll~~~nt~~~~~~~iq~~~aq~r~~~~~~~k~l~~~~~~~~~l~eee~e~~~~~~~s 169 (283)
T COG5325 106 ----------S------SFLQSKLLRDLNTECMEGQRIQQKSAQFRKYQVLQAKFLRNKNNDQHPLEEEEDEESLSSLGS 169 (283)
T ss_pred ----------H------HHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhHHHHhcccccCchhhhhhhhhhhccch
Confidence 0 0112345555556666666665544332222222110 011111 1222222222222222
Q ss_pred hHHHHH-HHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHH
Q 038457 189 EQIFQK-AIQEQGRGQVLNTLEEIQERHDAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNVQSGTTAL 267 (308)
Q Consensus 189 ~~~~q~-~l~~~~~~q~~~~l~~i~~R~~eI~~ie~~I~EL~~lF~dla~LV~~Qge~iD~Ie~Nv~~a~~~v~~g~~~L 267 (308)
.+..++ .+.. .+.......+.+|.++|.+|.++|.||++||.||+.+|.+||+.+|+||+|++++.+|++.|.++|
T Consensus 170 q~~lqq~~l~~---ee~~~qq~l~~er~~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL 246 (283)
T COG5325 170 QQTLQQQGLSN---EELEYQQILITERDEEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKEL 246 (283)
T ss_pred hhHHHHhhhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHH
Confidence 222221 1111 111122233889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccchHHHHHHHHHHHHHHHHHHHh
Q 038457 268 QNAKKHQKSSRKWMCIAIIILLIIVAVIVVGVI 300 (308)
Q Consensus 268 ~kA~~~qkk~rk~~c~~i~iviii~~iii~~i~ 300 (308)
.||-.|||+++||..|++++++||++++.+.+.
T Consensus 247 ~kA~~hqrrt~k~~~~~Llil~vv~lfv~l~~k 279 (283)
T COG5325 247 EKAPAHQRRTKKCRFYLLLILLVVLLFVSLIKK 279 (283)
T ss_pred HHhHHHHhhhccchhhHHHHHHHHHHHHHHHHH
Confidence 999999999999988888877777777766443
No 6
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=3e-19 Score=156.93 Aligned_cols=247 Identities=19% Similarity=0.281 Sum_probs=163.9
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCChhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhH
Q 038457 32 SSSDMGMEGFNKQIQEIEKQVDKLSALLKKLKDANEESKSVTKASEMKAIKKRMEKDVDEVGKIARNVKAKIEAINRENL 111 (308)
Q Consensus 32 ~~~~~~~~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~ik~~l~~l~~~~~ 111 (308)
..+...-.+|...+..|...|.....++.+|..|.++.....+.. -+|.+++--|++....+...|-.+..-..
T Consensus 34 ~~~~~~~seF~~~A~~Ig~~is~T~~kl~kLa~lAKrks~f~Dr~------VeI~eLT~iikqdi~sln~~i~~Lqei~~ 107 (311)
T KOG0812|consen 34 DKTVSQGSEFNKKASRIGKEISQTGAKLEKLAQLAKRKSLFDDRP------VEIQELTFIIKQDITSLNSQIAQLQEIVK 107 (311)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcc------hhhHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 334455669999999999999999999999999998754433221 25556666666555555555555444321
Q ss_pred hhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------ccC-CCC----ChHHHH
Q 038457 112 ANRQKPGCEKGTSVDRSRMNVTNALTKRFKELMTEFQTLRQRIQEEYREVVERRVIT------VTG-TRP----DEETID 180 (308)
Q Consensus 112 ~~~~~~~~~~~~~~~r~r~~~~~~L~~~f~~~~~~f~~~q~~~~~~~k~~~~r~~~~------v~~-~~~----~~e~i~ 180 (308)
..+..++..-..+.++++..|..++..+...|+.+..--.+..++.-.|+..- +.+ |.. +..-..
T Consensus 108 ----~~gn~s~~~~~~Hs~~vV~~Lqs~la~is~~fk~VLE~Rtenmka~k~R~dkfs~~~a~~~a~p~~n~~a~~~~~~ 183 (311)
T KOG0812|consen 108 ----ANGNLSNKQLVQHSKNVVVSLQSKLANISKDFKDVLEIRTENMKAVKNRRDKFSASYASLNANPVSNSAARLHPLK 183 (311)
T ss_pred ----HhccccchHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHhccccCCCCCcccCcccccCCchh
Confidence 11222222224677899999999999999999998765445555544444221 111 110 000000
Q ss_pred HH-------------HhcCCc--hHHHHHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 038457 181 HL-------------IETGNS--EQIFQKAIQEQGRGQVLNTLEEIQERHDAVKEIEKKLLDLQQIYMDMAVLVEAQGEI 245 (308)
Q Consensus 181 ~~-------------~~~~~~--~~~~q~~l~~~~~~q~~~~l~~i~~R~~eI~~ie~~I~EL~~lF~dla~LV~~Qge~ 245 (308)
.+ ++.|+. .+..|-.+. ....+++++|..++..||.+|.||.+||.+||.||.+|||+
T Consensus 184 ~l~~~~~~~sq~~~~ln~gd~~~~qqqQm~ll-------~es~~Y~Q~R~~~~q~IEstIsElG~IF~QLA~mVseQ~E~ 256 (311)
T KOG0812|consen 184 LLVDPKDEASQDVESLNMGDSSNPQQQQMALL-------DESDEYVQERAKTMQNIESTISELGGIFQQLASMVSEQEET 256 (311)
T ss_pred hhcCchhhcccccccccccCCCCCHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01 111221 111111111 12357899999999999999999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHH
Q 038457 246 LDNIESQVSNAVTNVQSGTTALQNAKKHQKSSRKWMCIAIIILLIIVAVIV 296 (308)
Q Consensus 246 iD~Ie~Nv~~a~~~v~~g~~~L~kA~~~qkk~rk~~c~~i~iviii~~iii 296 (308)
+.|||.||+.+..+++.|..+|.|+...-+++| |+++-|+.+++|++++.
T Consensus 257 i~RID~nv~ds~lnI~gA~~ellKy~e~vSSNR-wLmvkiF~i~ivFflvf 306 (311)
T KOG0812|consen 257 IQRIDDNVDDSDLNIEGAHSELLKYFERVSSNR-WLMVKIFGILIVFFLVF 306 (311)
T ss_pred HHHHHhcchhhhhhhHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988766555 55555555544444333
No 7
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=99.87 E-value=2.3e-20 Score=155.25 Aligned_cols=149 Identities=30% Similarity=0.532 Sum_probs=131.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCChhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHhhccCC
Q 038457 38 MEGFNKQIQEIEKQVDKLSALLKKLKDANEESKSVTKASEMKAIKKRMEKDVDEVGKIARNVKAKIEAINRENLANRQKP 117 (308)
Q Consensus 38 ~~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~ik~~l~~l~~~~~~~~~~~ 117 (308)
|+.||+.|+.|+..|..|+.++..|+.+|...++..+ ..+.++.+|+.+..+++.+++.|+..|+.|+..+.....
T Consensus 1 ~~~F~~~v~~I~~~i~~i~~~v~~l~~l~~~~~t~~~--~~~~~~~~l~~~~~~~~~~~~~ik~~lk~l~~~~~~~~~-- 76 (151)
T cd00179 1 LEEFFEEVEEIRGNIDKISEDVEELQKLHSQLLTAPD--ADPELKQELESLVQEIKKLAKEIKGKLKELEESNEQNEA-- 76 (151)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--
Confidence 5799999999999999999999999999999887665 356789999999999999999999999999987543211
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCChHHHHHHHhcCCchHHHH
Q 038457 118 GCEKGTSVDRSRMNVTNALTKRFKELMTEFQTLRQRIQEEYREVVERRVITVTGTRPDEETIDHLIETGNSEQIFQ 193 (308)
Q Consensus 118 ~~~~~~~~~r~r~~~~~~L~~~f~~~~~~f~~~q~~~~~~~k~~~~r~~~~v~~~~~~~e~i~~~~~~~~~~~~~q 193 (308)
.+++++.|++++++.+|.++|+++|.+|+.+|..|++.|+++++|+|.+ .+|++|++++++++++|++..|++
T Consensus 77 --~~~s~~~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~~~~k~~i~Rq~~i-~~~~~tdeei~~~~~~~~~~~~~~ 149 (151)
T cd00179 77 --LNGSSVDRIRKTQHSGLSKKFVEVMTEFNKAQRKYRERYKERIQRQLEI-TGGEATDEELEDMLESGNSEIFTS 149 (151)
T ss_pred --cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCChHHHHHHHHcCChhhhcC
Confidence 1257889999999999999999999999999999999999999998765 458999999999999997766654
No 8
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=99.60 E-value=4.4e-14 Score=112.22 Aligned_cols=116 Identities=30% Similarity=0.596 Sum_probs=101.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCChhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHhhccC
Q 038457 37 GMEGFNKQIQEIEKQVDKLSALLKKLKDANEESKSVTKASEMKAIKKRMEKDVDEVGKIARNVKAKIEAINRENLANRQK 116 (308)
Q Consensus 37 ~~~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~ik~~l~~l~~~~~~~~~~ 116 (308)
+|+.|++.|++|+..|..|+..+..|..+|...++.++ ..+.++.+++.+..+++.+++.|+..|+.|+........
T Consensus 2 ~~~~F~~~v~~I~~~I~~i~~~v~~l~~l~~~~l~~~~--~~~~~~~~l~~~~~~~~~~~~~i~~~lk~l~~~~~~~~~- 78 (117)
T smart00503 2 NLDEFFEKVEEIRANIQKISQNVAELQKLHEELLTPPD--ADKELREKLERLIDDIKRLAKEIRAKLKELEKENLENRA- 78 (117)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcc-
Confidence 58999999999999999999999999999999887654 335788999999999999999999999999987543211
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038457 117 PGCEKGTSVDRSRMNVTNALTKRFKELMTEFQTLRQRIQEEYR 159 (308)
Q Consensus 117 ~~~~~~~~~~r~r~~~~~~L~~~f~~~~~~f~~~q~~~~~~~k 159 (308)
.++++.|++++++.+|.++|+++|.+|+.+|..|++.||
T Consensus 79 ----~~~~~~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~~~~k 117 (117)
T smart00503 79 ----SGSASDRTRKAQTEKLRKKFKEVMNEFQRLQRKYREREK 117 (117)
T ss_pred ----cCCHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 145788999999999999999999999999988887663
No 9
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=99.56 E-value=3.7e-14 Score=100.32 Aligned_cols=63 Identities=38% Similarity=0.597 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhh
Q 038457 213 ERHDAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNVQSGTTALQNAKKHQK 275 (308)
Q Consensus 213 ~R~~eI~~ie~~I~EL~~lF~dla~LV~~Qge~iD~Ie~Nv~~a~~~v~~g~~~L~kA~~~qk 275 (308)
+|+++|..|+.+|.+|++||.+|+.+|.+||++||+|+.||+.|..++..|..+|.+|.+|+|
T Consensus 1 e~d~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~~~~k 63 (63)
T PF05739_consen 1 ERDEELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKALKYQK 63 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 588999999999999999999999999999999999999999999999999999999999976
No 10
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=99.46 E-value=2e-12 Score=100.03 Aligned_cols=103 Identities=25% Similarity=0.444 Sum_probs=89.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCChhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHhhccC
Q 038457 37 GMEGFNKQIQEIEKQVDKLSALLKKLKDANEESKSVTKASEMKAIKKRMEKDVDEVGKIARNVKAKIEAINRENLANRQK 116 (308)
Q Consensus 37 ~~~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~ik~~l~~l~~~~~~~~~~ 116 (308)
+|+.|++.|++|+..|..|+..+.+|..+|...+..++. ...++.+++.++.+|+++++.|+..|+.|+......
T Consensus 1 ~~~~f~~~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~~--d~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~~~~~--- 75 (103)
T PF00804_consen 1 FMPEFFDEVQEIREDIDKIKEKLNELRKLHKKILSSPDQ--DSELKRELDELTDEIKQLFQKIKKRLKQLSKDNEDS--- 75 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---
Confidence 589999999999999999999999999999999877763 267889999999999999999999999999985411
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 038457 117 PGCEKGTSVDRSRMNVTNALTKRFKELM 144 (308)
Q Consensus 117 ~~~~~~~~~~r~r~~~~~~L~~~f~~~~ 144 (308)
.+.++++++.|++++++.+|+++|+++|
T Consensus 76 ~~~~~~~~~~ri~~nq~~~L~~kf~~~m 103 (103)
T PF00804_consen 76 EGEEPSSNEVRIRKNQVQALSKKFQEVM 103 (103)
T ss_dssp HCTT--SHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCcHHHHHHHHHHHHHHHHHHHHC
Confidence 1234557899999999999999999987
No 11
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=99.42 E-value=9e-13 Score=91.90 Aligned_cols=59 Identities=41% Similarity=0.660 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 038457 212 QERHDAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNVQSGTTALQNA 270 (308)
Q Consensus 212 ~~R~~eI~~ie~~I~EL~~lF~dla~LV~~Qge~iD~Ie~Nv~~a~~~v~~g~~~L~kA 270 (308)
++|++++..|+.+|.+|++||.+|+.+|.+||++||+|++|++.+..+++.|..+|.+|
T Consensus 2 ~e~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~l~ka 60 (60)
T cd00193 2 QERDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKRLKKA 60 (60)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 57899999999999999999999999999999999999999999999999999999875
No 12
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=99.28 E-value=2.9e-11 Score=85.76 Aligned_cols=63 Identities=35% Similarity=0.554 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 038457 208 LEEIQERHDAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNVQSGTTALQNA 270 (308)
Q Consensus 208 l~~i~~R~~eI~~ie~~I~EL~~lF~dla~LV~~Qge~iD~Ie~Nv~~a~~~v~~g~~~L~kA 270 (308)
...+++|+.+|..|+.+|.+++.||.+|+.+|.+||++||+|++|++.+..++..|...|.+|
T Consensus 4 ~~~~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~~~l~~~ 66 (66)
T smart00397 4 DQMEEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANKRLKKA 66 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC
Confidence 345788999999999999999999999999999999999999999999999999999999875
No 13
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.92 E-value=4.1e-06 Score=73.90 Aligned_cols=225 Identities=12% Similarity=0.229 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCChhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHhhccCCC-
Q 038457 40 GFNKQIQEIEKQVDKLSALLKKLKDANEESKSVTKASEMKAIKKRMEKDVDEVGKIARNVKAKIEAINRENLANRQKPG- 118 (308)
Q Consensus 40 ~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~ik~~l~~l~~~~~~~~~~~~- 118 (308)
-|+....++.+....++..+.+-..+-.. .++ ....++..+.+ .|...++.++....-..+.++
T Consensus 7 p~~~v~~e~~k~~~~~~~~~~r~~~~~~~-----~~~-------~~~~~t~~lr~---~i~~~~edl~~~~~il~~~~~~ 71 (235)
T KOG3202|consen 7 PFFRVKNETLKLSEEIQGLYQRRSELLKD-----TGS-------DAEELTSVLRR---SIEEDLEDLDELISILERNPSK 71 (235)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhh-----ccc-------hhHHHHHHHHH---HhHHHHHHHHHHHHHHHhCccc
Confidence 57777777777777777766666655543 111 12222222221 222222222222111111121
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCChHHHHHHHhcCCchHHHHHHHHH
Q 038457 119 CEKGTSVDRSRMNVTNALTKRFKELMTEFQTLRQRIQEEYREVVERRVITVTGTRPDEETIDHLIETGNSEQIFQKAIQE 198 (308)
Q Consensus 119 ~~~~~~~~r~r~~~~~~L~~~f~~~~~~f~~~q~~~~~~~k~~~~r~~~~v~~~~~~~e~i~~~~~~~~~~~~~q~~l~~ 198 (308)
.+-...+.+-|+..+..+..++...-..|... .+... .-|. ...+++..+...+.+-...+.+ ..+.. .
T Consensus 72 ~~ide~El~~R~~~i~~lr~q~~~~~~~~~~~--~~~~~----~~r~--~l~~~~~~~~~~~~~~~~~~~D-~v~~~-~- 140 (235)
T KOG3202|consen 72 FGIDEFELSRRRRFIDNLRTQLRQMKSKMAMS--GFANS----NIRD--ILLGPEKSPNLDEAMSRASGLD-NVQEI-V- 140 (235)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccccc----cchh--hhcCCCCCCchhhhHHHhhccC-cHHHH-H-
Confidence 11223567888999998888887776666541 11111 1121 1223443332112221111111 01110 0
Q ss_pred hhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhccc
Q 038457 199 QGRGQVLNTLEEIQERHDAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNVQSGTTALQNAKKHQKSSR 278 (308)
Q Consensus 199 ~~~~q~~~~l~~i~~R~~eI~~ie~~I~EL~~lF~dla~LV~~Qge~iD~Ie~Nv~~a~~~v~~g~~~L~kA~~~qkk~r 278 (308)
+.+. .-+++-...+..|+.+|.-++.+=..++.-+.+||.+||+.++-++.+...+..+.+.|.+-.+ .++.+
T Consensus 141 ~~qq------qm~~eQDe~Ld~ls~ti~rlk~~a~~~g~EL~~Q~~llDdl~~e~d~t~srl~~~~~~l~~v~~-~~s~~ 213 (235)
T KOG3202|consen 141 QLQQ------QMLQEQDEGLDGLSATVQRLKGMALAMGEELEEQGRLLDDLDNEMDRTESRLDRVMKRLAKVNR-MASQC 213 (235)
T ss_pred HHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhccc
Confidence 0001 1245567789999999999999999999999999999999999999999999999999999877 44445
Q ss_pred chHHHHHHHHHHHHHHHHH
Q 038457 279 KWMCIAIIILLIIVAVIVV 297 (308)
Q Consensus 279 k~~c~~i~iviii~~iii~ 297 (308)
.+||++++++.++++++++
T Consensus 214 ~~~~~il~l~~~~~lvv~i 232 (235)
T KOG3202|consen 214 SQWCAILLLVGLLLLVVII 232 (235)
T ss_pred cchhHHHHHHHHHHHHHHH
Confidence 5555554444444444443
No 14
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.63 E-value=4.3e-05 Score=69.21 Aligned_cols=88 Identities=24% Similarity=0.394 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHH
Q 038457 208 LEEIQERHDAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNVQSGTTALQNAKKHQKSSRKWMCIAIII 287 (308)
Q Consensus 208 l~~i~~R~~eI~~ie~~I~EL~~lF~dla~LV~~Qge~iD~Ie~Nv~~a~~~v~~g~~~L~kA~~~qkk~rk~~c~~i~i 287 (308)
+....+--.+++.||+.+.|+..|-.-|+.-|-+|..-||.|-.++..|..|++.|++.|.||.....+.|+|+.+++++
T Consensus 224 ~~~~n~~~devrqie~~lvEI~~Lq~ifsehvl~Q~~~Id~I~d~~~~~teNIk~gNe~irka~~~~~~~r~~~lf~llv 303 (316)
T KOG3894|consen 224 LNELNELLDEVRQIEKRLVEISALQDIFSEHVLQQDQNIDLIHDLQSGATENIKDGNEEIRKAKRNNGGLRVFLLFFLLV 303 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHhcccchhHHHHHHHH
Confidence 34455666889999999999999999999999999999999999999999999999999999999988889998888777
Q ss_pred HHHHHHHH
Q 038457 288 LLIIVAVI 295 (308)
Q Consensus 288 viii~~ii 295 (308)
+.++++++
T Consensus 304 lsf~lLFl 311 (316)
T KOG3894|consen 304 LSFSLLFL 311 (316)
T ss_pred HHHHHHHH
Confidence 77776654
No 15
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=98.55 E-value=2.9e-06 Score=65.54 Aligned_cols=99 Identities=16% Similarity=0.333 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhcCChhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHhhccCCCCCCCchHHH
Q 038457 48 IEKQVDKLSALLKKLKDANEESKSVTKASEMKAIKKRMEKDVDEVGKIARNVKAKIEAINRENLANRQKPGCEKGTSVDR 127 (308)
Q Consensus 48 I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~ik~~l~~l~~~~~~~~~~~~~~~~~~~~r 127 (308)
|...|..|+..+..|+.+.+.. +++.|..+++++|+.+...++.+++.+...|+.+.... ......+
T Consensus 1 is~~l~~in~~v~~l~k~~~~l---Gt~~Ds~~lR~~i~~~~~~~~~l~k~~~~~l~~l~~~~----------~~~~~~~ 67 (102)
T PF14523_consen 1 ISSNLFKINQNVSQLEKLVNQL---GTPRDSQELREKIHQLIQKTNQLIKEISELLKKLNSLS----------SDRSNDR 67 (102)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH----SSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSH--------------HHH
T ss_pred CchHHHHHHHHHHHHHHHHHHh---CCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------hhhhhhH
Confidence 4567888888888888777764 45678889999999999999999999999999987641 1134677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038457 128 SRMNVTNALTKRFKELMTEFQTLRQRIQEEYR 159 (308)
Q Consensus 128 ~r~~~~~~L~~~f~~~~~~f~~~q~~~~~~~k 159 (308)
..+.+...|.++|..++.+|+.+|..|.+..+
T Consensus 68 ~~k~~~~KL~~df~~~l~~fq~~q~~~~~~~k 99 (102)
T PF14523_consen 68 QQKLQREKLSRDFKEALQEFQKAQRRYAEKEK 99 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88999999999999999999999887766544
No 16
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.06 E-value=0.00011 Score=57.23 Aligned_cols=84 Identities=17% Similarity=0.318 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHH---HHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHH
Q 038457 215 HDAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSN---AVTNVQSGTTALQNAKKHQKSSRKWMCIAIIILLII 291 (308)
Q Consensus 215 ~~eI~~ie~~I~EL~~lF~dla~LV~~Qge~iD~Ie~Nv~~---a~~~v~~g~~~L~kA~~~qkk~rk~~c~~i~iviii 291 (308)
...+..++..+.|+-+++.+=-.=|-+.|+-||.+++-.++ +...-+++...|+ ++|..++-|++.|++++++|+
T Consensus 28 ~~k~~~tq~QvdeVv~IMr~NV~KVlER~ekL~~L~drad~L~~~as~F~~~A~klk--rk~wWkn~Km~~il~~v~~i~ 105 (116)
T KOG0860|consen 28 NDKLQQTQAQVDEVVDIMRENVEKVLERGEKLDELDDRADQLQAGASQFEKTAVKLK--RKMWWKNCKMRIILGLVIIIL 105 (116)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 35577888899999999999999999999999999876554 3333334444443 356566667777666666666
Q ss_pred HHHHHHHHh
Q 038457 292 VAVIVVGVI 300 (308)
Q Consensus 292 ~~iii~~i~ 300 (308)
+++|+++++
T Consensus 106 l~iiii~~~ 114 (116)
T KOG0860|consen 106 LVVIIIYIF 114 (116)
T ss_pred HHHHHHHHh
Confidence 666666554
No 17
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=97.92 E-value=0.00037 Score=52.48 Aligned_cols=47 Identities=17% Similarity=0.349 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHH
Q 038457 216 DAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNVQS 262 (308)
Q Consensus 216 ~eI~~ie~~I~EL~~lF~dla~LV~~Qge~iD~Ie~Nv~~a~~~v~~ 262 (308)
..+.++...+.|+.++..+=-.-+.+.|+-|+.++...+.-....+.
T Consensus 3 dkl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~ 49 (89)
T PF00957_consen 3 DKLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQ 49 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHH
Confidence 34778889999999999988888999999999999977765555443
No 18
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.56 E-value=0.00072 Score=52.51 Aligned_cols=80 Identities=15% Similarity=0.328 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Q 038457 215 HDAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNVQSGTTALQNAKKHQKSSRKWMCIAIIILLIIVAV 294 (308)
Q Consensus 215 ~~eI~~ie~~I~EL~~lF~dla~LV~~Qge~iD~Ie~Nv~~a~~~v~~g~~~L~kA~~~qkk~rk~~c~~i~iviii~~i 294 (308)
++.+..|.+.|.-|..|--|+..-|..|..+||.++...+.+.......-..++.-.+. ..++.+||.+++.+|++++
T Consensus 35 ee~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ar~--sg~~l~~~m~~f~lV~~fi 112 (118)
T KOG3385|consen 35 EEAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMARR--SGISLLCWMAVFSLVAFFI 112 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHH
Confidence 35588888999999999999999999999999999999999999999999988765543 5567888776666655554
Q ss_pred HH
Q 038457 295 IV 296 (308)
Q Consensus 295 ii 296 (308)
+.
T Consensus 113 ~~ 114 (118)
T KOG3385|consen 113 LW 114 (118)
T ss_pred hh
Confidence 43
No 19
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=96.92 E-value=0.22 Score=43.67 Aligned_cols=89 Identities=20% Similarity=0.419 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcccch-HHHHHHHH
Q 038457 210 EIQERHDAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNVQSGTTALQNAKKHQKSSRKW-MCIAIIIL 288 (308)
Q Consensus 210 ~i~~R~~eI~~ie~~I~EL~~lF~dla~LV~~Qge~iD~Ie~Nv~~a~~~v~~g~~~L~kA~~~qkk~rk~-~c~~i~iv 288 (308)
++..=++-+.+|.+-..++.+|..+=-.+|..=..-+..-+.|++.+..++++|.+..++|++ +|.+=| +|++++++
T Consensus 186 ~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~AvksaRaaRk--kki~c~gI~~iii~v 263 (280)
T COG5074 186 EIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVKSARAARK--KKIRCYGICFIIIIV 263 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHHHHHHHh--cceehhhhHHHHHHH
Confidence 344444556666666667777777777777777777888899999999999999999766654 556755 45444444
Q ss_pred HHHHHH-HHHHHh
Q 038457 289 LIIVAV-IVVGVI 300 (308)
Q Consensus 289 iii~~i-ii~~i~ 300 (308)
++++++ ++.|++
T Consensus 264 iv~vv~~v~~~v~ 276 (280)
T COG5074 264 IVVVVFKVVPFVV 276 (280)
T ss_pred HHHHHhcccchhh
Confidence 444443 333343
No 20
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=96.65 E-value=0.03 Score=50.38 Aligned_cols=52 Identities=10% Similarity=0.316 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 038457 216 DAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNVQSGTTALQNA 270 (308)
Q Consensus 216 ~eI~~ie~~I~EL~~lF~dla~LV~~Qge~iD~Ie~Nv~~a~~~v~~g~~~L~kA 270 (308)
.++..+-+++.+=...|. ..+.+-..+|++.+..++.....+......|...
T Consensus 170 ~em~~La~~LK~~s~~~~---~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~ 221 (251)
T PF09753_consen 170 EEMLSLARQLKENSLAFS---QILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEH 221 (251)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667777666666654 4689999999999999999999999999988763
No 21
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.64 E-value=0.55 Score=43.29 Aligned_cols=67 Identities=16% Similarity=0.307 Sum_probs=54.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 038457 206 NTLEEIQERHDAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNVQSGTTALQNAKK 272 (308)
Q Consensus 206 ~~l~~i~~R~~eI~~ie~~I~EL~~lF~dla~LV~~Qge~iD~Ie~Nv~~a~~~v~~g~~~L~kA~~ 272 (308)
..-.++..=++.|.+|.+--.+++.|...=+.+|..=...+.+=..+|..+.++|.+|.+.-++|++
T Consensus 203 ~Rh~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~qkkaRK 269 (297)
T KOG0810|consen 203 ERHDEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVKYQKKARK 269 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3345566667788888888888888888888889888888889999999999999999777666543
No 22
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.31 E-value=0.81 Score=41.53 Aligned_cols=87 Identities=16% Similarity=0.216 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHH
Q 038457 208 LEEIQERHDAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNVQSGTTALQNAKKHQKSSRKWMCIAIII 287 (308)
Q Consensus 208 l~~i~~R~~eI~~ie~~I~EL~~lF~dla~LV~~Qge~iD~Ie~Nv~~a~~~v~~g~~~L~kA~~~qkk~rk~~c~~i~i 287 (308)
...+++=+.+|..+.+-..+|..|..+=+.+|..=.+-|++-..||+++..+..+|.+.=+++++. .--.+|+++++
T Consensus 179 ~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~~yq~~~~k~---~~~ll~v~~~v 255 (269)
T KOG0811|consen 179 EQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAAKYQRKARKK---KCILLLVGGPV 255 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc---hhhhhHHHHHH
Confidence 345667789999999999999999999999999999999999999999999999999887765432 24456666666
Q ss_pred HHHHHHHHHH
Q 038457 288 LLIIVAVIVV 297 (308)
Q Consensus 288 viii~~iii~ 297 (308)
++++++++++
T Consensus 256 ~lii~l~i~~ 265 (269)
T KOG0811|consen 256 GLIIGLIIAG 265 (269)
T ss_pred HHHHHHHHHH
Confidence 6666665554
No 23
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.78 E-value=1.2 Score=38.75 Aligned_cols=58 Identities=19% Similarity=0.308 Sum_probs=39.4
Q ss_pred HHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHH
Q 038457 238 LVEAQGEILDNIESQVSNAVTNVQSGTTALQNAKKHQKSSRKWMCIAIIILLIIVAVIV 296 (308)
Q Consensus 238 LV~~Qge~iD~Ie~Nv~~a~~~v~~g~~~L~kA~~~qkk~rk~~c~~i~iviii~~iii 296 (308)
=.+.|-+.|.+=-.-.-.+.+|+.++.+-|..-.+. -...||.|.+|+++++++++++
T Consensus 157 dL~~QRe~L~rar~rL~~td~~lgkS~kiL~tM~RR-~~~nk~~~~aii~~l~~~il~i 214 (220)
T KOG1666|consen 157 DLHGQREQLERARERLRETDANLGKSRKILTTMTRR-LIRNKFTLTAIIALLVLAILLI 214 (220)
T ss_pred HHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 356799999888888888888888888888654332 2335777776655554444333
No 24
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=94.92 E-value=6 Score=41.74 Aligned_cols=56 Identities=18% Similarity=0.127 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhh
Q 038457 218 VKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNVQSGTTALQNAKKHQK 275 (308)
Q Consensus 218 I~~ie~~I~EL~~lF~dla~LV~~Qge~iD~Ie~Nv~~a~~~v~~g~~~L~kA~~~qk 275 (308)
+..+.+.+..+..-+.+++.-+-.+ +...+..-...+..++........++..|+.
T Consensus 359 v~~ik~~l~~~~~~i~~~a~~i~~~--~~~~~s~~~~~~~~~~~~~~~~~~~y~~yR~ 414 (806)
T PF05478_consen 359 VPPIKRDLDSIGKQIRSQAKQIPNQ--IDSNISDILNNTERSSRSFEDEYEKYDSYRW 414 (806)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHH--HHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Confidence 4556666666777777777767666 6666777777777777777777777777733
No 25
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=93.68 E-value=5.2 Score=36.17 Aligned_cols=87 Identities=18% Similarity=0.293 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHH
Q 038457 208 LEEIQERHDAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNVQSGTTALQNAKKHQKSSRKWMCIAIII 287 (308)
Q Consensus 208 l~~i~~R~~eI~~ie~~I~EL~~lF~dla~LV~~Qge~iD~Ie~Nv~~a~~~v~~g~~~L~kA~~~qkk~rk~~c~~i~i 287 (308)
..+|..=++.|.++..-..||..+..+=+.+|.-=..-|+++-.|...|.....+|..+=+++ +|.+.++.+++++
T Consensus 194 ~~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hqrrt----~k~~~~~Llil~v 269 (283)
T COG5325 194 DEEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQRRT----KKCRFYLLLILLV 269 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHHhhh----ccchhhHHHHHHH
Confidence 345777789999999999999999999999999999999999999999999999999887654 4567776666666
Q ss_pred HHHHHHHHHHH
Q 038457 288 LLIIVAVIVVG 298 (308)
Q Consensus 288 viii~~iii~~ 298 (308)
++++++.++.+
T Consensus 270 v~lfv~l~~kl 280 (283)
T COG5325 270 VLLFVSLIKKL 280 (283)
T ss_pred HHHHHHHHHHh
Confidence 66666666543
No 26
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.98 E-value=0.49 Score=43.03 Aligned_cols=55 Identities=24% Similarity=0.349 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 038457 215 HDAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNVQSGTTALQN 269 (308)
Q Consensus 215 ~~eI~~ie~~I~EL~~lF~dla~LV~~Qge~iD~Ie~Nv~~a~~~v~~g~~~L~k 269 (308)
...+..|-..+..|..|-.||+.-|..|.+.||+|+++|+.....|..+++.+++
T Consensus 217 D~NL~qis~~lg~LK~mA~dmg~Eie~Qn~~Ld~I~~k~d~~d~~v~~~n~R~~k 271 (273)
T KOG3065|consen 217 DENLDQLSAILGRLKNMALDMGSEIESQNERLDRIEDKVDRLDLRVDKANKRAKK 271 (273)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHhhhhHHHHHHHHHHh
Confidence 4558888888999999999999999999999999999999999999998887754
No 27
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=92.33 E-value=3.8 Score=36.81 Aligned_cols=83 Identities=20% Similarity=0.322 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhHHHHH----HHhhHHHHHHHHHHHHHHHHHHHHHhhcccchHH
Q 038457 208 LEEIQERHDAVK-EIEKKLLDLQQIYMDMAVLVEAQGEILDN----IESQVSNAVTNVQSGTTALQNAKKHQKSSRKWMC 282 (308)
Q Consensus 208 l~~i~~R~~eI~-~ie~~I~EL~~lF~dla~LV~~Qge~iD~----Ie~Nv~~a~~~v~~g~~~L~kA~~~qkk~rk~~c 282 (308)
+..+-.+|+.++ +|...|..|..-.++-+... +..|.. ++.-...+..+...-..+=.+..+|.+++.+|+.
T Consensus 154 ~e~~l~~~~~~QE~L~~em~~La~~LK~~s~~~---~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~~~~~~~~ 230 (251)
T PF09753_consen 154 LEKILQHHRNLQEDLTEEMLSLARQLKENSLAF---SQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSSKSWGCWT 230 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHH
Confidence 344445666665 67777777777776654443 233332 3333344444444444555555666555555544
Q ss_pred HHHHHHHHHHH
Q 038457 283 IAIIILLIIVA 293 (308)
Q Consensus 283 ~~i~iviii~~ 293 (308)
|+++++++++|
T Consensus 231 ~~~i~~v~~~F 241 (251)
T PF09753_consen 231 WLMIFVVIIVF 241 (251)
T ss_pred HHHHHHHHHHH
Confidence 44444433333
No 28
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=88.99 E-value=7.6 Score=28.75 Aligned_cols=24 Identities=25% Similarity=0.495 Sum_probs=13.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHH
Q 038457 205 LNTLEEIQERHDAVKEIEKKLLDL 228 (308)
Q Consensus 205 ~~~l~~i~~R~~eI~~ie~~I~EL 228 (308)
...+..+-+|.+.+..|+..-.+|
T Consensus 20 ~~Ni~~ll~Rge~L~~L~~kt~~L 43 (89)
T PF00957_consen 20 RENIDKLLERGEKLEELEDKTEEL 43 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCchHHHHHHHHHHH
Confidence 345555666666666665544443
No 29
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=88.65 E-value=8.5 Score=28.85 Aligned_cols=42 Identities=10% Similarity=0.208 Sum_probs=21.5
Q ss_pred HhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcccchHH
Q 038457 241 AQGEILDNIESQVSNAVTNVQSGTTALQNAKKHQKSSRKWMC 282 (308)
Q Consensus 241 ~Qge~iD~Ie~Nv~~a~~~v~~g~~~L~kA~~~qkk~rk~~c 282 (308)
+|.+.|....+-...-..-...+.+-+.+..+..+.-+.+++
T Consensus 33 ~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~D~~li~ 74 (92)
T PF03908_consen 33 ESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKTDRILIF 74 (92)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 444555555555555555566666666655444333333333
No 30
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=83.31 E-value=3.1 Score=27.87 Aligned_cols=34 Identities=21% Similarity=0.369 Sum_probs=21.9
Q ss_pred HHHHhhcccchHHHHHHHHHHHHHHHHHHHhccc
Q 038457 270 AKKHQKSSRKWMCIAIIILLIIVAVIVVGVIKPW 303 (308)
Q Consensus 270 A~~~qkk~rk~~c~~i~iviii~~iii~~i~~~~ 303 (308)
+-+.=++++.-+..+++++++++++++.|++.|+
T Consensus 8 ~~~~f~~nk~a~~gl~il~~~vl~ai~~p~~~p~ 41 (56)
T PF12911_consen 8 AWRRFRRNKLAVIGLIILLILVLLAIFAPFISPY 41 (56)
T ss_pred HHHHHHhCchHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3333345555556666667777777888888776
No 31
>PRK10884 SH3 domain-containing protein; Provisional
Probab=82.75 E-value=32 Score=30.03 Aligned_cols=40 Identities=8% Similarity=0.149 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 038457 230 QIYMDMAVLVEAQGEILDNIESQVSNAVTNVQSGTTALQN 269 (308)
Q Consensus 230 ~lF~dla~LV~~Qge~iD~Ie~Nv~~a~~~v~~g~~~L~k 269 (308)
+.-.+|..-+.+-...+..++..-.......+.+..++..
T Consensus 118 ~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~ 157 (206)
T PRK10884 118 QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDA 157 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555555665666666666666656555543
No 32
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.74 E-value=2.5 Score=36.31 Aligned_cols=55 Identities=13% Similarity=0.167 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 038457 216 DAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNVQSGTTALQNAKKH 273 (308)
Q Consensus 216 ~eI~~ie~~I~EL~~lF~dla~LV~~Qge~iD~Ie~Nv~~a~~~v~~g~~~L~kA~~~ 273 (308)
..|.++...+.|+..++.+=-..|-+.||-| |-=|+.|..-..++...-+.+++.
T Consensus 125 d~lskvkaqv~evk~vM~eNIekvldRGeki---ELLVdKTenl~~~s~~fr~q~r~~ 179 (217)
T KOG0859|consen 125 SKLAKVKAQVTEVKGVMMENIEKVLDRGEKI---ELLVDKTENLRSKSFDFRTQGRKL 179 (217)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccCeE---EeeechhhhhhhhhHHHHHHHHHH
Confidence 3466777888999988888888888888743 333444433333333333333333
No 33
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.42 E-value=7.7 Score=30.50 Aligned_cols=15 Identities=33% Similarity=0.629 Sum_probs=5.6
Q ss_pred chHHHHHHHHHHHHH
Q 038457 279 KWMCIAIIILLIIVA 293 (308)
Q Consensus 279 k~~c~~i~iviii~~ 293 (308)
-++|++++++++|++
T Consensus 96 ~il~~v~~i~l~iii 110 (116)
T KOG0860|consen 96 IILGLVIIILLVVII 110 (116)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 34
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=79.83 E-value=1.1 Score=33.00 Aligned_cols=34 Identities=26% Similarity=0.570 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Q 038457 261 QSGTTALQNAKKHQKSSRKWMCIAIIILLIIVAV 294 (308)
Q Consensus 261 ~~g~~~L~kA~~~qkk~rk~~c~~i~iviii~~i 294 (308)
.....+...|+++-+++|+|..+.++++++++++
T Consensus 47 ~~~~Gd~~~A~~aS~~Ak~~~~ia~~~g~~~~i~ 80 (82)
T PF04505_consen 47 RYAAGDYEGARRASRKAKKWSIIAIIIGIVIIIL 80 (82)
T ss_pred HHHCCCHHHHHHHHHHhHHHHHHHHHHHHHHHhe
Confidence 3345567788888888888887776666555543
No 35
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=79.36 E-value=2.8 Score=30.83 Aligned_cols=9 Identities=11% Similarity=-0.101 Sum_probs=3.9
Q ss_pred HHHhccccC
Q 038457 297 VGVIKPWKS 305 (308)
Q Consensus 297 ~~i~~~~~~ 305 (308)
++++..+.+
T Consensus 40 lImlfqsSS 48 (85)
T PF10717_consen 40 LIMLFQSSS 48 (85)
T ss_pred HHHHHhccC
Confidence 334445443
No 36
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.90 E-value=53 Score=30.16 Aligned_cols=234 Identities=14% Similarity=0.261 Sum_probs=131.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh---cCChhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHhhc
Q 038457 38 MEGFNKQIQEIEKQVDKLSALLKKLKDANEESKS---VTKASEMKAIKKRMEKDVDEVGKIARNVKAKIEAINRENLANR 114 (308)
Q Consensus 38 ~~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~---~~~~~~~~~l~~~i~~~~~~i~~~~~~ik~~l~~l~~~~~~~~ 114 (308)
..+.-..+..++..|. .+.+....|-.... ..+..+.+.+..+|..+.....+.++.++........+-.-..
T Consensus 63 ~~ev~~~l~rvrrk~~----eLgk~~~Khl~PsF~Dk~ede~~IE~ltq~Itqll~~cqk~iq~~~a~~n~~~~~e~~~~ 138 (305)
T KOG0809|consen 63 AEEVDYYLSRVRRKID----ELGKAHAKHLRPSFSDKREDEHEIEELTQEITQLLQKCQKLIQRLSASLNQLSPSERLLR 138 (305)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHH
Confidence 3334444455555554 45566666654431 2223345567777777777777777777777642222110000
Q ss_pred cCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhhccCCCCChHHHHHHHhcCCchHH
Q 038457 115 QKPGCEKGTSVDRSRMNVTNALTKRFKELMTEFQTLRQRIQ---EEYREVVERRVITVTGTRPDEETIDHLIETGNSEQI 191 (308)
Q Consensus 115 ~~~~~~~~~~~~r~r~~~~~~L~~~f~~~~~~f~~~q~~~~---~~~k~~~~r~~~~v~~~~~~~e~i~~~~~~~~~~~~ 191 (308)
....+.--.+...++.+|...=..|-.--..-. ..|...... .+..| +++.+. .. ..+.
T Consensus 139 --------~n~~~~la~~LQ~~s~~fR~~Qs~YLK~l~~~ee~~~~~e~~~~~---~~~~~--dd~d~~---~~--~~qe 200 (305)
T KOG0809|consen 139 --------KNAQGYLALQLQTLSREFRGLQSKYLKRLRNREENSQEYEDSLDN---TVDLP--DDEDFS---DR--TFQE 200 (305)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhcccchhhhccc---cccCc--chhhhh---hh--hHHH
Confidence 012334455666777777777777754211111 122222211 11111 122221 11 1111
Q ss_pred HHHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 038457 192 FQKAIQEQGRGQVLNTLEEIQERHDAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNVQSGTTALQNAK 271 (308)
Q Consensus 192 ~q~~l~~~~~~q~~~~l~~i~~R~~eI~~ie~~I~EL~~lF~dla~LV~~Qge~iD~Ie~Nv~~a~~~v~~g~~~L~kA~ 271 (308)
.|.++..+....+..-..++..=.+.|..|..-..||..|..|=++.|.-=.-.|+++-..|+.|...+.+|...=
T Consensus 201 ~ql~~~e~~~~~~~erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KAe~yQ---- 276 (305)
T KOG0809|consen 201 QQLMLFENNEEVVREREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKAERYQ---- 276 (305)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHHHHHH----
Confidence 1111122222333455567888889999999999999999999999999888899999999999999999998655
Q ss_pred HHhhcccchHHHHHHHHHHHHHHHHH
Q 038457 272 KHQKSSRKWMCIAIIILLIIVAVIVV 297 (308)
Q Consensus 272 ~~qkk~rk~~c~~i~iviii~~iii~ 297 (308)
+.-++-+-.++..++|+++++++|+.
T Consensus 277 k~~~k~~~i~~L~l~ii~llvllilk 302 (305)
T KOG0809|consen 277 KRNKKMKVILMLTLLIIALLVLLILK 302 (305)
T ss_pred hcCCceEehHHHHHHHHHHHHHHHhh
Confidence 44556665444444444444444543
No 37
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=77.85 E-value=49 Score=29.19 Aligned_cols=48 Identities=10% Similarity=0.169 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHH
Q 038457 252 QVSNAVTNVQSGTTALQNAKKHQKSSRKWMCIAIIILLIIVAVIVVGV 299 (308)
Q Consensus 252 Nv~~a~~~v~~g~~~L~kA~~~qkk~rk~~c~~i~iviii~~iii~~i 299 (308)
++....+..++..+++++|.+.-+++-+++|.++.+++.|++++++++
T Consensus 121 ei~k~r~e~~~ml~evK~~~E~y~k~~k~~~~gi~aml~Vf~LF~lvm 168 (230)
T PF03904_consen 121 EIKKVREENKSMLQEVKQSHEKYQKRQKSMYKGIGAMLFVFMLFALVM 168 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 344455556666777777776666667888887776666555555544
No 38
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=76.95 E-value=24 Score=25.09 Aligned_cols=43 Identities=23% Similarity=0.378 Sum_probs=21.7
Q ss_pred hhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHH
Q 038457 242 QGEILDNIESQVSNAVTNVQSGTTALQNAKKHQKSSRKWMCIAIIIL 288 (308)
Q Consensus 242 Qge~iD~Ie~Nv~~a~~~v~~g~~~L~kA~~~qkk~rk~~c~~i~iv 288 (308)
-.+-++.+|.+-.............|.+= +.+.+|.+-+++..
T Consensus 18 ~~~~i~~lE~~~~~~e~~i~~~~~~l~~I----~~n~kW~~r~iiGa 60 (71)
T PF10779_consen 18 HEERIDKLEKRDAANEKDIKNLNKQLEKI----KSNTKWIWRTIIGA 60 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 34445555555555555445555555432 34556766544433
No 39
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=76.54 E-value=29 Score=25.92 Aligned_cols=52 Identities=10% Similarity=0.183 Sum_probs=26.7
Q ss_pred HHHHHhhHHHHHHHHHHHHHHH-------HHHHHHhhcccchHHHHHHHHHHHHHHHHH
Q 038457 246 LDNIESQVSNAVTNVQSGTTAL-------QNAKKHQKSSRKWMCIAIIILLIIVAVIVV 297 (308)
Q Consensus 246 iD~Ie~Nv~~a~~~v~~g~~~L-------~kA~~~qkk~rk~~c~~i~iviii~~iii~ 297 (308)
-++++..++.+.+....+...+ .......-+.++|.-++|.+++-+++.+++
T Consensus 33 r~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~V~e~P~~svgiAagvG~llG~Ll 91 (94)
T PF05957_consen 33 RDRAEEALDDARDRAEDAADQAREQAREAAEQTEDYVRENPWQSVGIAAGVGFLLGLLL 91 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHH
Confidence 3555555555555444333322 222222244578988877777655554443
No 40
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.76 E-value=58 Score=28.49 Aligned_cols=56 Identities=9% Similarity=0.218 Sum_probs=26.6
Q ss_pred HHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH
Q 038457 239 VEAQGEILDNIESQVSNAVTNVQSGTTALQNAKKHQKSSRKWMCIAIIILLIIVAVI 295 (308)
Q Consensus 239 V~~Qge~iD~Ie~Nv~~a~~~v~~g~~~L~kA~~~qkk~rk~~c~~i~iviii~~ii 295 (308)
+.+|+-.|-.+-.-+-....-+.=.+.-+.--.+.-+.- ||+.|+.+|+++|++++
T Consensus 152 l~~Q~~~L~~~~~ki~~~~ntLGlSn~ti~lIeRR~~~D-k~iF~~G~i~~~v~~yl 207 (213)
T KOG3251|consen 152 LVEQRLTLKGTQKKILDILNTLGLSNQTIRLIERRVRED-KIIFYGGVILTLVIMYL 207 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHH
Confidence 456776666666655555555544444443333322222 44444444444444433
No 41
>PF02346 Vac_Fusion: Chordopoxvirus fusion protein; InterPro: IPR003436 This is a family of viral fusion proteins from the Chordopoxvirinae. A 14kDa Vaccinia virus protein has been demonstrated to function as a viral fusion protein mediating cell fusion at endosmomal (low) pH []. The protein, found in the envelope fraction of the virions, is required for fusing the outermost of the two golgi-derived membranes enveloping the virus with the plasma membrane, and its subsequent release extracellularly. The N-terminal proximal region is essential for its fusion ability.; GO: 0019064 viral envelope fusion with host membrane, 0019031 viral envelope
Probab=73.82 E-value=22 Score=24.32 Aligned_cols=44 Identities=16% Similarity=0.343 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHH
Q 038457 217 AVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNV 260 (308)
Q Consensus 217 eI~~ie~~I~EL~~lF~dla~LV~~Qge~iD~Ie~Nv~~a~~~v 260 (308)
+++.++..+..|-..|.....--..+++.+++.|.+++.-..|+
T Consensus 2 ~~k~~~~rl~~Lek~~~~~~~~c~~~~~~i~RLE~H~ETlRk~m 45 (57)
T PF02346_consen 2 RIKDIEERLMVLEKDFRNAIKCCKENSEAIKRLEHHIETLRKYM 45 (57)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 36778888899999999999999999999999999999865554
No 42
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=72.24 E-value=1e+02 Score=30.10 Aligned_cols=120 Identities=13% Similarity=0.273 Sum_probs=59.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHhhHhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038457 82 KKRMEKDVDEVGKIARNVKAKIEAINRENLANRQKPGCEKGTSVDRSRMNVTNALTKRFKELMTEFQTLRQRIQEEYREV 161 (308)
Q Consensus 82 ~~~i~~~~~~i~~~~~~ik~~l~~l~~~~~~~~~~~~~~~~~~~~r~r~~~~~~L~~~f~~~~~~f~~~q~~~~~~~k~~ 161 (308)
+.++......+-..+..++..++.|.+..... + .|....++..+.+.+..+..+....+. |-...+..
T Consensus 208 k~~L~~~sd~Ll~kVdDLQD~VE~LRkDV~~R----g-------vRp~~~qle~v~kdi~~a~~~L~~m~~-~i~~~kp~ 275 (424)
T PF03915_consen 208 KKKLSEESDRLLTKVDDLQDLVEDLRKDVVQR----G-------VRPSPKQLETVAKDISRASKELKKMKE-YIKTEKPI 275 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----C-------CcCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCHH
Confidence 34555555555555666666666666654321 2 244566777777777777777776543 33334444
Q ss_pred HHHHhhhccCCCCChHHHHHHHhcCCchHHHHHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038457 162 VERRVITVTGTRPDEETIDHLIETGNSEQIFQKAIQEQGRGQVLNTLEEIQERHDAVKEIEKKLLDLQQIYMDMAVLVEA 241 (308)
Q Consensus 162 ~~r~~~~v~~~~~~~e~i~~~~~~~~~~~~~q~~l~~~~~~q~~~~l~~i~~R~~eI~~ie~~I~EL~~lF~dla~LV~~ 241 (308)
+++.. +.|++.+++. .+||.. -..-+..|...+.-+.+.|.-+..++.+
T Consensus 276 WkKiW---------E~EL~~V~eE---QqfL~~-------------------QedL~~DL~eDl~k~~etf~lveq~~~~ 324 (424)
T PF03915_consen 276 WKKIW---------ESELQKVCEE---QQFLKL-------------------QEDLLSDLKEDLKKASETFALVEQCTEE 324 (424)
T ss_dssp HHHHH---------HHHHHHHHHH---HHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHCT-
T ss_pred HHHHH---------HHHHHHHHHH---HHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43321 4566665544 223221 0122444445555555566665555555
Q ss_pred hhH
Q 038457 242 QGE 244 (308)
Q Consensus 242 Qge 244 (308)
|+.
T Consensus 325 Q~k 327 (424)
T PF03915_consen 325 QEK 327 (424)
T ss_dssp ---
T ss_pred Hcc
Confidence 544
No 43
>PHA02844 putative transmembrane protein; Provisional
Probab=71.93 E-value=6.5 Score=28.23 Aligned_cols=20 Identities=10% Similarity=0.232 Sum_probs=8.2
Q ss_pred cchHHHHHHHHHHHHHHHHH
Q 038457 278 RKWMCIAIIILLIIVAVIVV 297 (308)
Q Consensus 278 rk~~c~~i~iviii~~iii~ 297 (308)
..|+.++|+++.++++++++
T Consensus 46 ~~~~~~ii~i~~v~~~~~~~ 65 (75)
T PHA02844 46 SSTKIWILTIIFVVFATFLT 65 (75)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 34444444444333333333
No 44
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=71.73 E-value=12 Score=25.77 Aligned_cols=18 Identities=6% Similarity=0.071 Sum_probs=8.8
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 038457 280 WMCIAIIILLIIVAVIVV 297 (308)
Q Consensus 280 ~~c~~i~iviii~~iii~ 297 (308)
..-+++++++++++++++
T Consensus 37 ~~~~i~~~~~i~~l~v~~ 54 (59)
T PF09889_consen 37 KTQYIFFGIFILFLAVWI 54 (59)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555555554444443
No 45
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=70.39 E-value=47 Score=25.59 Aligned_cols=21 Identities=5% Similarity=0.300 Sum_probs=13.6
Q ss_pred ccchHHHHHHHHHHHHHHHHH
Q 038457 277 SRKWMCIAIIILLIIVAVIVV 297 (308)
Q Consensus 277 ~rk~~c~~i~iviii~~iii~ 297 (308)
-++|+-++|...+-+++-+++
T Consensus 81 e~PWq~VGvaAaVGlllGlLl 101 (104)
T COG4575 81 ENPWQGVGVAAAVGLLLGLLL 101 (104)
T ss_pred cCCchHHHHHHHHHHHHHHHH
Confidence 478888887766655554443
No 46
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=70.08 E-value=5.3 Score=29.36 Aligned_cols=20 Identities=25% Similarity=0.576 Sum_probs=10.4
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 038457 280 WMCIAIIILLIIVAVIVVGV 299 (308)
Q Consensus 280 ~~c~~i~iviii~~iii~~i 299 (308)
++.|++.+||||++|+++=.
T Consensus 27 lMtILivLVIIiLlImlfqs 46 (85)
T PF10717_consen 27 LMTILIVLVIIILLIMLFQS 46 (85)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 45555555555555555433
No 47
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=68.85 E-value=48 Score=25.05 Aligned_cols=42 Identities=5% Similarity=0.011 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHH
Q 038457 216 DAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAV 257 (308)
Q Consensus 216 ~eI~~ie~~I~EL~~lF~dla~LV~~Qge~iD~Ie~Nv~~a~ 257 (308)
..|..||..=..+..-+.++-.=++.|..+.+..+.+++.-.
T Consensus 11 ~Ri~rLEendk~i~~~L~~Ik~gq~~qe~v~~kld~tlD~i~ 52 (98)
T PF11166_consen 11 WRIRRLEENDKTIFNKLDEIKDGQHDQELVNQKLDRTLDEIN 52 (98)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhHhhHHHHHHHHHhhHHHHH
Confidence 337777776666666666666667888888888888888743
No 48
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=68.70 E-value=83 Score=27.75 Aligned_cols=52 Identities=6% Similarity=0.170 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 038457 216 DAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNVQSGTTALQNA 270 (308)
Q Consensus 216 ~eI~~ie~~I~EL~~lF~dla~LV~~Qge~iD~Ie~Nv~~a~~~v~~g~~~L~kA 270 (308)
+++..+.+++.+-.--|++ -+.+-.+.+-.-+--++....-......-+++.
T Consensus 158 esll~LArslKtnalAfqs---alkeDnQvl~~~~k~~D~N~~~L~~~Serve~y 209 (244)
T KOG2678|consen 158 ESLLKLARSLKTNALAFQS---ALKEDNQVLGAAEKGIDVNSQGLMDVSERVEKY 209 (244)
T ss_pred HHHHHHHHHHHHhHHHHHH---HHHhhHHHHHHHHHHHhHHHHHHHhhhHHHHHH
Confidence 4455555555555444544 244444555555555555555555555555543
No 49
>PHA02975 hypothetical protein; Provisional
Probab=68.38 E-value=6.1 Score=27.89 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=9.2
Q ss_pred hcccchHHHHHHHHHHHHHHHH
Q 038457 275 KSSRKWMCIAIIILLIIVAVIV 296 (308)
Q Consensus 275 kk~rk~~c~~i~iviii~~iii 296 (308)
+++..|++++++++.+++++++
T Consensus 39 ~~~~~~~~~ii~i~~v~~~~~~ 60 (69)
T PHA02975 39 KKSSLSIILIIFIIFITCIAVF 60 (69)
T ss_pred cCCchHHHHHHHHHHHHHHHHH
Confidence 3444454444443333333333
No 50
>PRK14762 membrane protein; Provisional
Probab=67.60 E-value=10 Score=21.22 Aligned_cols=17 Identities=35% Similarity=0.704 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 038457 283 IAIIILLIIVAVIVVGV 299 (308)
Q Consensus 283 ~~i~iviii~~iii~~i 299 (308)
|++.++.++-+.++.++
T Consensus 6 w~i~iifligllvvtgv 22 (27)
T PRK14762 6 WAVLIIFLIGLLVVTGV 22 (27)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 51
>PRK08307 stage III sporulation protein SpoAB; Provisional
Probab=67.45 E-value=18 Score=30.49 Aligned_cols=31 Identities=19% Similarity=0.323 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhhccc-chHHHHHHHHHHHHHH
Q 038457 264 TTALQNAKKHQKSSR-KWMCIAIIILLIIVAV 294 (308)
Q Consensus 264 ~~~L~kA~~~qkk~r-k~~c~~i~iviii~~i 294 (308)
..++.+|++-++++. -|.|.++++++.++++
T Consensus 138 ~~~~~~a~~~~~k~~Kmy~~LGvl~Gl~lvIl 169 (171)
T PRK08307 138 EREEEEAEEEQKKNEKMYKYLGFLAGLLIVIL 169 (171)
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 344555666655554 4667777766555544
No 52
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=67.09 E-value=2.1e+02 Score=31.69 Aligned_cols=34 Identities=3% Similarity=0.007 Sum_probs=20.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038457 36 MGMEGFNKQIQEIEKQVDKLSALLKKLKDANEES 69 (308)
Q Consensus 36 ~~~~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~ 69 (308)
..+..++.+++.+...+...+....+.++..++.
T Consensus 1422 ~~l~~~~ae~eq~~~~v~ea~~~aseA~~~Aq~~ 1455 (1758)
T KOG0994|consen 1422 TQLRSKLAEAEQTLSMVREAKLSASEAQQSAQRA 1455 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3455666666666666666666666665554443
No 53
>TIGR02833 spore_III_AB stage III sporulation protein AB. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage III sporulation protein AB.
Probab=66.03 E-value=20 Score=30.19 Aligned_cols=30 Identities=27% Similarity=0.488 Sum_probs=17.4
Q ss_pred HHHHHHHHHhhcccc-hHHHHHHHHHHHHHH
Q 038457 265 TALQNAKKHQKSSRK-WMCIAIIILLIIVAV 294 (308)
Q Consensus 265 ~~L~kA~~~qkk~rk-~~c~~i~iviii~~i 294 (308)
.++.+|++-++++.| |.+.++++++.++++
T Consensus 138 ~~~~~a~~~~~k~~Kmy~~LGvl~Gl~lvIl 168 (170)
T TIGR02833 138 RQLTEAEDEQKKNEKMYRYLGVLVGLMIVLL 168 (170)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 445556666555544 667777766555543
No 54
>PHA03054 IMV membrane protein; Provisional
Probab=65.05 E-value=9.5 Score=27.12 Aligned_cols=7 Identities=43% Similarity=1.094 Sum_probs=2.6
Q ss_pred hHHHHHH
Q 038457 280 WMCIAII 286 (308)
Q Consensus 280 ~~c~~i~ 286 (308)
|.++++.
T Consensus 48 ~~~~ii~ 54 (72)
T PHA03054 48 WYWLIII 54 (72)
T ss_pred HHHHHHH
Confidence 4333333
No 55
>PRK10404 hypothetical protein; Provisional
Probab=64.92 E-value=61 Score=24.85 Aligned_cols=50 Identities=14% Similarity=0.194 Sum_probs=25.3
Q ss_pred HHHHHhhHHHHHHHHHH--------HHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHH
Q 038457 246 LDNIESQVSNAVTNVQS--------GTTALQNAKKHQKSSRKWMCIAIIILLIIVAVIV 296 (308)
Q Consensus 246 iD~Ie~Nv~~a~~~v~~--------g~~~L~kA~~~qkk~rk~~c~~i~iviii~~iii 296 (308)
=++++..+..+.+.... +..-...|..|- +-++|.-++|.+++-+++-++
T Consensus 40 R~r~~~~L~~ar~~l~~~~~~~~~~~k~aa~~td~yV-~e~Pw~avGiaagvGlllG~L 97 (101)
T PRK10404 40 KARAEKALDDVKKRVSQASDSYYYRAKQAVYRADDYV-HEKPWQGIGVGAAVGLVLGLL 97 (101)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHH
Confidence 35555555555553333 233333334442 337898887766654444333
No 56
>PHA02819 hypothetical protein; Provisional
Probab=64.79 E-value=9.3 Score=27.16 Aligned_cols=7 Identities=14% Similarity=-0.035 Sum_probs=2.6
Q ss_pred hHHHHHH
Q 038457 280 WMCIAII 286 (308)
Q Consensus 280 ~~c~~i~ 286 (308)
|..+++.
T Consensus 46 ~~~~ii~ 52 (71)
T PHA02819 46 RYYLIIG 52 (71)
T ss_pred HHHHHHH
Confidence 4333333
No 57
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=64.14 E-value=52 Score=23.77 Aligned_cols=68 Identities=12% Similarity=0.203 Sum_probs=42.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCChhhHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 038457 36 MGMEGFNKQIQEIEKQVDKLSALLKKLKDANEESKSVTKASEMKAIKKRMEKDVDEVGKIARNVKAKIE 104 (308)
Q Consensus 36 ~~~~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~ik~~l~ 104 (308)
..+...+.....+...|......++.+....... ....+.+...++.+++.+...-..+...+...-.
T Consensus 34 ~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L-~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~~r~~ 101 (105)
T PF00435_consen 34 EELEEQLKKHKELQEEIESRQERLESLNEQAQQL-IDSGPEDSDEIQEKLEELNQRWEALCELVEERRQ 101 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTTHTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH-HHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777777777666665 3333555556666666555555554444444433
No 58
>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=63.91 E-value=24 Score=29.67 Aligned_cols=30 Identities=17% Similarity=0.356 Sum_probs=15.7
Q ss_pred HHHHHHHHHhhcc-cchHHHHHHHHHHHHHH
Q 038457 265 TALQNAKKHQKSS-RKWMCIAIIILLIIVAV 294 (308)
Q Consensus 265 ~~L~kA~~~qkk~-rk~~c~~i~iviii~~i 294 (308)
.++..|++-.++. |-|.+.++++++.++++
T Consensus 138 ~~~~~a~~~~~~~~Klyr~LGvl~G~~lvIl 168 (170)
T PF09548_consen 138 QQLEEAREEAKKKGKLYRSLGVLGGLFLVIL 168 (170)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 3444454444443 44667776666555443
No 59
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=62.87 E-value=10 Score=28.10 Aligned_cols=7 Identities=14% Similarity=0.159 Sum_probs=2.9
Q ss_pred HHHHHHH
Q 038457 265 TALQNAK 271 (308)
Q Consensus 265 ~~L~kA~ 271 (308)
.+|.+-.
T Consensus 20 DQL~qlV 26 (84)
T PF06143_consen 20 DQLEQLV 26 (84)
T ss_pred HHHHHHH
Confidence 3444433
No 60
>PF00523 Fusion_gly: Fusion glycoprotein F0; InterPro: IPR000776 The fusion glycoproteins from this family are found in ssRNA negative-strand viruses. This protein directs fusion of viral and cellular membranes, resulting in viral penetration, and can direct fusion of infected cells with adjoining cells, resulting in the formation of syncytia. The mature form is a dimer of polypeptides F1 and F2 linked by a disulphide bond [].; GO: 0006948 induction by virus of host cell-cell fusion; PDB: 2FYZ_D 3MAW_B 4DAG_A 1G5G_D 1SVF_A 2B9B_A 1G2C_M 3RRT_A 3RRR_D 3RKI_A ....
Probab=62.50 E-value=12 Score=37.13 Aligned_cols=34 Identities=18% Similarity=0.256 Sum_probs=17.1
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 038457 245 ILDNIESQVSNAVTNVQSGTTALQNAKKHQKSSRK 279 (308)
Q Consensus 245 ~iD~Ie~Nv~~a~~~v~~g~~~L~kA~~~qkk~rk 279 (308)
.+| |..++.++...++++...|.++.+.-.+.++
T Consensus 433 PlD-IS~eL~~vn~sL~~A~~~L~~Sn~iL~~v~~ 466 (490)
T PF00523_consen 433 PLD-ISSELGQVNNSLNNAKDLLDKSNQILDSVNP 466 (490)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTTT-
T ss_pred ccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344 5555555555555555555555555444443
No 61
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=62.31 E-value=8.3 Score=33.51 Aligned_cols=18 Identities=22% Similarity=0.748 Sum_probs=10.0
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 038457 280 WMCIAIIILLIIVAVIVV 297 (308)
Q Consensus 280 ~~c~~i~iviii~~iii~ 297 (308)
++|++|++|+++|+.+++
T Consensus 131 LIClIIIAVLfLICT~Lf 148 (227)
T PF05399_consen 131 LICLIIIAVLFLICTLLF 148 (227)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456666655555555443
No 62
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=61.35 E-value=20 Score=24.59 Aligned_cols=13 Identities=23% Similarity=0.348 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHh
Q 038457 262 SGTTALQNAKKHQ 274 (308)
Q Consensus 262 ~g~~~L~kA~~~q 274 (308)
.|..-|..-=++|
T Consensus 10 TA~~FL~RvGr~q 22 (60)
T PF06072_consen 10 TATEFLRRVGRQQ 22 (60)
T ss_pred cHHHHHHHHhHHH
Confidence 3444454444444
No 63
>PRK10132 hypothetical protein; Provisional
Probab=60.59 E-value=78 Score=24.61 Aligned_cols=21 Identities=14% Similarity=0.256 Sum_probs=13.6
Q ss_pred cccchHHHHHHHHHHHHHHHH
Q 038457 276 SSRKWMCIAIIILLIIVAVIV 296 (308)
Q Consensus 276 k~rk~~c~~i~iviii~~iii 296 (308)
..++|.-++|.+++-+++-++
T Consensus 83 ~~~Pw~svgiaagvG~llG~L 103 (108)
T PRK10132 83 RERPWCSVGTAAAVGIFIGAL 103 (108)
T ss_pred HhCcHHHHHHHHHHHHHHHHH
Confidence 347898888776655554444
No 64
>PRK10884 SH3 domain-containing protein; Provisional
Probab=59.96 E-value=1.2e+02 Score=26.48 Aligned_cols=52 Identities=12% Similarity=0.208 Sum_probs=24.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHH-HHHHHHHHHHHHHHHHhccc
Q 038457 250 ESQVSNAVTNVQSGTTALQNAKKHQKSSRKWMCI-AIIILLIIVAVIVVGVIKPW 303 (308)
Q Consensus 250 e~Nv~~a~~~v~~g~~~L~kA~~~qkk~rk~~c~-~i~iviii~~iii~~i~~~~ 303 (308)
...+..+...++....++..-.+ ... +.|+.+ +.++++-+++.+|+|-+.|.
T Consensus 145 ~~~l~~~~~~~~~l~~~~~~~~~-~~~-~~wf~~Gg~v~~~GlllGlilp~l~pr 197 (206)
T PRK10884 145 KNQLIVAQKKVDAANLQLDDKQR-TII-MQWFMYGGGVAGIGLLLGLLLPHLIPR 197 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHH-HHHHHHchHHHHHHHHHHHHhcccccc
Confidence 34444455555555555543222 122 244443 33344445555566655553
No 65
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=59.70 E-value=15 Score=26.52 Aligned_cols=21 Identities=29% Similarity=0.482 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 038457 281 MCIAIIILLIIVAVIVVGVIK 301 (308)
Q Consensus 281 ~c~~i~iviii~~iii~~i~~ 301 (308)
+++++++++++++++++.++.
T Consensus 2 ii~~~~~g~~~ll~~v~~~~~ 22 (75)
T PF14575_consen 2 IIASIIVGVLLLLVLVIIVIV 22 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred EEehHHHHHHHHHHhheeEEE
Confidence 444444444444444433333
No 66
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=58.90 E-value=61 Score=22.85 Aligned_cols=48 Identities=17% Similarity=0.214 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHH
Q 038457 216 DAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNVQSG 263 (308)
Q Consensus 216 ~eI~~ie~~I~EL~~lF~dla~LV~~Qge~iD~Ie~Nv~~a~~~v~~g 263 (308)
..|..||..+.=.-....+|+..|..|...||+.+..+..-...+...
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346677777777777777888888888888888888887776666554
No 67
>PRK04325 hypothetical protein; Provisional
Probab=58.75 E-value=66 Score=23.14 Aligned_cols=45 Identities=18% Similarity=0.243 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHH
Q 038457 218 VKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNVQS 262 (308)
Q Consensus 218 I~~ie~~I~EL~~lF~dla~LV~~Qge~iD~Ie~Nv~~a~~~v~~ 262 (308)
|..||..+.=.-+...+|+..|..|+..|++....+..-.+.+..
T Consensus 11 i~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 11 ITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777888888888888888888999999998888877776665544
No 68
>PF14992 TMCO5: TMCO5 family
Probab=57.91 E-value=1.5e+02 Score=27.10 Aligned_cols=54 Identities=17% Similarity=0.238 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHH
Q 038457 208 LEEIQERHDAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNVQ 261 (308)
Q Consensus 208 l~~i~~R~~eI~~ie~~I~EL~~lF~dla~LV~~Qge~iD~Ie~Nv~~a~~~v~ 261 (308)
...+..-..+|.+++.+...++++=.|=+.-+..=.+.|.+||...+...-+.+
T Consensus 122 ~~~~~~qE~ei~kve~d~~~v~~l~eDq~~~i~klkE~L~rmE~ekE~~lLe~e 175 (280)
T PF14992_consen 122 LESCASQEKEIAKVEDDYQQVHQLCEDQANEIKKLKEKLRRMEEEKEMLLLEKE 175 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677888888888888888888888888777788888886666555444
No 69
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=57.91 E-value=78 Score=23.76 Aligned_cols=61 Identities=11% Similarity=0.238 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCChhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhH
Q 038457 41 FNKQIQEIEKQVDKLSALLKKLKDANEESKSVTKASEMKAIKKRMEKDVDEVGKIARNVKAKIEAINRENL 111 (308)
Q Consensus 41 f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~ik~~l~~l~~~~~ 111 (308)
|+.-.+++...|..+.........+..... -...+..+..++...+..+...|..|++.+.
T Consensus 3 F~~v~~ev~~sl~~l~~~~~~~~~~~~~~~----------~~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~ 63 (97)
T PF09177_consen 3 FFVVKDEVQSSLDRLESLYRRWQRLRSDTS----------SSEELKWLKRELRNALQSIEWDLEDLEEAVR 63 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHCC-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcccCC----------CcHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777778888888777777666654443211 1245556666777777777777777777654
No 70
>PRK13865 type IV secretion system protein VirB8; Provisional
Probab=57.50 E-value=38 Score=30.08 Aligned_cols=25 Identities=8% Similarity=0.135 Sum_probs=12.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcccc
Q 038457 280 WMCIAIIILLIIVAVIVVGVIKPWK 304 (308)
Q Consensus 280 ~~c~~i~iviii~~iii~~i~~~~~ 304 (308)
|++.++.+++.++.++.+..+.|.|
T Consensus 41 w~va~~~~~~~~~~~~Av~~l~PLK 65 (229)
T PRK13865 41 AAVAGIAVAGNVAQAFAIATMVPLE 65 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccC
Confidence 5544444444444445455555543
No 71
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=57.20 E-value=1.9e+02 Score=27.95 Aligned_cols=32 Identities=13% Similarity=-0.028 Sum_probs=22.6
Q ss_pred HHhhHHHHHHHhhHHHHHHHHHHHH-HHHHHHH
Q 038457 240 EAQGEILDNIESQVSNAVTNVQSGT-TALQNAK 271 (308)
Q Consensus 240 ~~Qge~iD~Ie~Nv~~a~~~v~~g~-~~L~kA~ 271 (308)
++=-|-.-.|.++++..+..+.+=. ..+.++.
T Consensus 294 Yqs~eRaRdi~E~~Es~qtRisklE~~~~Qq~~ 326 (395)
T PF10267_consen 294 YQSYERARDIWEVMESCQTRISKLEQQQQQQVV 326 (395)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3455678889999999999888766 3444443
No 72
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=56.05 E-value=55 Score=21.44 Aligned_cols=55 Identities=15% Similarity=0.201 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 038457 220 EIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNVQSGTTALQNAKKHQ 274 (308)
Q Consensus 220 ~ie~~I~EL~~lF~dla~LV~~Qge~iD~Ie~Nv~~a~~~v~~g~~~L~kA~~~q 274 (308)
.-.+.+..|.....++..|..+=|.+|..=..-++....++..+...+..|.+.-
T Consensus 3 e~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~l 57 (60)
T cd00193 3 ERDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKRL 57 (60)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788888888888888888888888887888888888888888888876653
No 73
>PHA02414 hypothetical protein
Probab=55.98 E-value=88 Score=23.77 Aligned_cols=49 Identities=22% Similarity=0.271 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 038457 217 AVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNVQSGTTALQN 269 (308)
Q Consensus 217 eI~~ie~~I~EL~~lF~dla~LV~~Qge~iD~Ie~Nv~~a~~~v~~g~~~L~k 269 (308)
+-..|+..+.||++|...|..=+.-|.|---.|-|.++.- +.+...|..
T Consensus 30 dn~eL~~av~ELRdivvslDKd~Av~sEKqshi~yQi~~L----ee~i~aL~~ 78 (111)
T PHA02414 30 DNKELEVAVAELRDIVVSLDKDVAVNSEKQSHIYYQIERL----EEKISALAE 78 (111)
T ss_pred chHHHHHHHHHHHHHHHHhhhHhhhhHHHhhHHHHHHHHH----HHHHHHHHh
Confidence 4677888999999999888888887888777777777764 444445543
No 74
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=55.75 E-value=19 Score=26.36 Aligned_cols=15 Identities=27% Similarity=0.308 Sum_probs=10.2
Q ss_pred HHHHHHhhHHHHHHH
Q 038457 245 ILDNIESQVSNAVTN 259 (308)
Q Consensus 245 ~iD~Ie~Nv~~a~~~ 259 (308)
.++.||.+.....-.
T Consensus 10 ~L~eiEr~L~~~DP~ 24 (82)
T PF11239_consen 10 RLEEIERQLRADDPR 24 (82)
T ss_pred HHHHHHHHHHhcCcH
Confidence 788888887654333
No 75
>PF12669 P12: Virus attachment protein p12 family
Probab=55.70 E-value=10 Score=26.00 Aligned_cols=11 Identities=36% Similarity=0.395 Sum_probs=6.4
Q ss_pred HHHHhccccCC
Q 038457 296 VVGVIKPWKSG 306 (308)
Q Consensus 296 i~~i~~~~~~~ 306 (308)
+.-+++.++.|
T Consensus 17 ~r~~~k~~K~G 27 (58)
T PF12669_consen 17 IRKFIKDKKKG 27 (58)
T ss_pred HHHHHHHhhcC
Confidence 35556666665
No 76
>PF06789 UPF0258: Uncharacterised protein family (UPF0258); InterPro: IPR009626 This is a group of proteins of unknown function.
Probab=54.71 E-value=2.8 Score=34.43 Aligned_cols=14 Identities=21% Similarity=0.285 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHhhc
Q 038457 263 GTTALQNAKKHQKS 276 (308)
Q Consensus 263 g~~~L~kA~~~qkk 276 (308)
|..-|.|=.+.+.|
T Consensus 115 GyDsLLKkKEae~k 128 (159)
T PF06789_consen 115 GYDSLLKKKEAELK 128 (159)
T ss_pred chHHHHHHHHHHHH
Confidence 44445444443333
No 77
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=54.12 E-value=82 Score=22.84 Aligned_cols=51 Identities=8% Similarity=0.258 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhcCChhhHHHHHHHHHhhHHHHHHHHHH
Q 038457 46 QEIEKQVDKLSALLKKLKDANEESKSVTKASEMKAIKKRMEKDVDEVGKIARN 98 (308)
Q Consensus 46 ~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~ 98 (308)
-.|+.+|..+.+++..|+.......... ....++..+++.+...+..+...
T Consensus 7 l~Ir~dIk~vd~KVdaLq~~V~~l~~~~--~~v~~l~~klDa~~~~l~~l~~~ 57 (75)
T PF05531_consen 7 LVIRQDIKAVDDKVDALQTQVDDLESNL--PDVTELNKKLDAQSAQLTTLNTK 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHHHHHHHH
Confidence 3566677777777776666655433211 23345777888777666655543
No 78
>PHA02675 ORF104 fusion protein; Provisional
Probab=52.87 E-value=91 Score=23.00 Aligned_cols=39 Identities=21% Similarity=0.372 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHH
Q 038457 221 IEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTN 259 (308)
Q Consensus 221 ie~~I~EL~~lF~dla~LV~~Qge~iD~Ie~Nv~~a~~~ 259 (308)
||..+..|-+.|+.+..-...=++.|+|.|.+.+.-..+
T Consensus 35 le~RL~~L~k~~~~i~~cC~~~~~~L~RLE~H~ETLRk~ 73 (90)
T PHA02675 35 VEERLVSLLDSYKTITDCCRETGARLDRLERHLETLREA 73 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566788888888889999999999998875443
No 79
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.54 E-value=41 Score=30.70 Aligned_cols=37 Identities=19% Similarity=0.349 Sum_probs=29.5
Q ss_pred HHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 038457 233 MDMAVLVEAQGEILDNIESQVSNAVTNVQSGTTALQN 269 (308)
Q Consensus 233 ~dla~LV~~Qge~iD~Ie~Nv~~a~~~v~~g~~~L~k 269 (308)
.--..+..+||+.|++||.|++........|.++|..
T Consensus 96 ~~Tl~~L~~Q~eQL~rte~~lD~i~~d~~~~er~l~~ 132 (273)
T KOG3065|consen 96 SRTLVMLSEQGEQLERTEKNLDDIKVDLKRAERNLTE 132 (273)
T ss_pred HHHHHHHHHhHHHHHhHHhhhhhhHHHHHHHHHHHHH
Confidence 3444567789999999999999988888877777753
No 80
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=50.61 E-value=2.4e+02 Score=27.22 Aligned_cols=34 Identities=21% Similarity=0.507 Sum_probs=28.2
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038457 34 SDMGMEGFNKQIQEIEKQVDKLSALLKKLKDANE 67 (308)
Q Consensus 34 ~~~~~~~f~~~v~~I~~~I~~i~~~i~~L~~l~~ 67 (308)
....+..++.++.+|+.....+...++.|+....
T Consensus 210 ~~~~l~~~~~el~eik~~~~~L~~~~e~Lk~~~~ 243 (395)
T PF10267_consen 210 QNLGLQKILEELREIKESQSRLEESIEKLKEQYQ 243 (395)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457788999999999999999999999986443
No 81
>PHA02819 hypothetical protein; Provisional
Probab=48.44 E-value=21 Score=25.43 Aligned_cols=28 Identities=18% Similarity=0.219 Sum_probs=19.5
Q ss_pred HHhhcccchHHHHHHHHHHHHHHHHHHH
Q 038457 272 KHQKSSRKWMCIAIIILLIIVAVIVVGV 299 (308)
Q Consensus 272 ~~qkk~rk~~c~~i~iviii~~iii~~i 299 (308)
.+.++++++.-+.+++++++++++++.+
T Consensus 35 s~~~~~~~~~~~~~~ii~l~~~~~~~~~ 62 (71)
T PHA02819 35 NYNKKTKKSFLRYYLIIGLVTIVFVIIF 62 (71)
T ss_pred CCcccccCChhHHHHHHHHHHHHHHHHH
Confidence 3556667888888888887666655543
No 82
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=47.97 E-value=14 Score=28.36 Aligned_cols=24 Identities=17% Similarity=0.196 Sum_probs=9.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccc
Q 038457 280 WMCIAIIILLIIVAVIVVGVIKPW 303 (308)
Q Consensus 280 ~~c~~i~iviii~~iii~~i~~~~ 303 (308)
+-++++.++.++++++++.++..|
T Consensus 61 ~~iili~lls~v~IlVily~IyYF 84 (101)
T PF06024_consen 61 GNIILISLLSFVCILVILYAIYYF 84 (101)
T ss_pred ccchHHHHHHHHHHHHHHhhheEE
Confidence 333333333344444444444333
No 83
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.41 E-value=62 Score=28.32 Aligned_cols=24 Identities=8% Similarity=0.178 Sum_probs=16.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhh
Q 038457 87 KDVDEVGKIARNVKAKIEAINREN 110 (308)
Q Consensus 87 ~~~~~i~~~~~~ik~~l~~l~~~~ 110 (308)
.+..+|.+....+...|.+|+-+.
T Consensus 36 ~~l~~i~~~leEa~ell~qMdlEv 59 (220)
T KOG1666|consen 36 QLLSEIDSKLEEANELLDQMDLEV 59 (220)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHH
Confidence 345566777777777788887764
No 84
>PRK10573 type IV pilin biogenesis protein; Provisional
Probab=47.28 E-value=2.1e+02 Score=27.31 Aligned_cols=39 Identities=15% Similarity=0.262 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHH
Q 038457 221 IEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTN 259 (308)
Q Consensus 221 ie~~I~EL~~lF~dla~LV~~Qge~iD~Ie~Nv~~a~~~ 259 (308)
+...+.+...+|-++-.-...-||.--+++.-...+.++
T Consensus 111 ls~al~~~~~~fp~~~~~li~~GE~sG~L~~~l~~la~~ 149 (399)
T PRK10573 111 FSEALLQWPQVFPPLYQALIATGELTGKLDECCFQLARQ 149 (399)
T ss_pred HHHHHHhCcCcCCHHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 455555555556555444445666666666655555554
No 85
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=46.89 E-value=25 Score=28.00 Aligned_cols=20 Identities=5% Similarity=0.095 Sum_probs=8.6
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 038457 280 WMCIAIIILLIIVAVIVVGV 299 (308)
Q Consensus 280 ~~c~~i~iviii~~iii~~i 299 (308)
++|+++++++|.++++++++
T Consensus 68 ~Ii~gv~aGvIg~Illi~y~ 87 (122)
T PF01102_consen 68 GIIFGVMAGVIGIILLISYC 87 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred ehhHHHHHHHHHHHHHHHHH
Confidence 34555554444433333333
No 86
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=46.65 E-value=1.1 Score=32.95 Aligned_cols=13 Identities=23% Similarity=0.759 Sum_probs=1.2
Q ss_pred hhcccchHHHHHH
Q 038457 274 QKSSRKWMCIAII 286 (308)
Q Consensus 274 qkk~rk~~c~~i~ 286 (308)
.++.|.|++++|-
T Consensus 61 ~rkKrrwlwLlik 73 (81)
T PF14812_consen 61 PRKKRRWLWLLIK 73 (81)
T ss_dssp ----------TTT
T ss_pred ccccchhHHHHHH
Confidence 3444556554433
No 87
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=46.35 E-value=20 Score=23.79 Aligned_cols=21 Identities=24% Similarity=0.657 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHhcccc
Q 038457 284 AIIILLIIVAVIVVGVIKPWK 304 (308)
Q Consensus 284 ~i~iviii~~iii~~i~~~~~ 304 (308)
.++.++++++++++.++.|+-
T Consensus 18 a~~gl~il~~~vl~ai~~p~~ 38 (56)
T PF12911_consen 18 AVIGLIILLILVLLAIFAPFI 38 (56)
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 455555666666666777763
No 88
>PF00523 Fusion_gly: Fusion glycoprotein F0; InterPro: IPR000776 The fusion glycoproteins from this family are found in ssRNA negative-strand viruses. This protein directs fusion of viral and cellular membranes, resulting in viral penetration, and can direct fusion of infected cells with adjoining cells, resulting in the formation of syncytia. The mature form is a dimer of polypeptides F1 and F2 linked by a disulphide bond [].; GO: 0006948 induction by virus of host cell-cell fusion; PDB: 2FYZ_D 3MAW_B 4DAG_A 1G5G_D 1SVF_A 2B9B_A 1G2C_M 3RRT_A 3RRR_D 3RKI_A ....
Probab=45.99 E-value=17 Score=36.05 Aligned_cols=27 Identities=15% Similarity=0.254 Sum_probs=17.1
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 038457 244 EILDNIESQVSNAVTNVQSGTTALQNA 270 (308)
Q Consensus 244 e~iD~Ie~Nv~~a~~~v~~g~~~L~kA 270 (308)
.-|+++...+++|+++++++++-|.+.
T Consensus 438 ~eL~~vn~sL~~A~~~L~~Sn~iL~~v 464 (490)
T PF00523_consen 438 SELGQVNNSLNNAKDLLDKSNQILDSV 464 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345556666667777777777766644
No 89
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=44.81 E-value=66 Score=23.64 Aligned_cols=23 Identities=13% Similarity=0.232 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhh
Q 038457 88 DVDEVGKIARNVKAKIEAINREN 110 (308)
Q Consensus 88 ~~~~i~~~~~~ik~~l~~l~~~~ 110 (308)
...++..+...|+.....+...+
T Consensus 43 ~~~el~~l~~~i~~~~~~~~~~l 65 (103)
T PF00804_consen 43 LKRELDELTDEIKQLFQKIKKRL 65 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555554443
No 90
>PRK00295 hypothetical protein; Provisional
Probab=44.72 E-value=1.1e+02 Score=21.57 Aligned_cols=45 Identities=11% Similarity=0.217 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHH
Q 038457 218 VKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNVQS 262 (308)
Q Consensus 218 I~~ie~~I~EL~~lF~dla~LV~~Qge~iD~Ie~Nv~~a~~~v~~ 262 (308)
|..||..+.-.-+...+|+..|..|...||.....+..-...+..
T Consensus 7 i~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 7 VTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777888888888888888888999999998888887776665544
No 91
>PF11598 COMP: Cartilage oligomeric matrix protein; InterPro: IPR024665 Thrombospondins are adhesive glycoproteins that mediate cell-to-cell and cell-to-matrix interactions. Cartilage oligomeric matrix protein may play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as collagen and fibronectin [, ]. Thrombospondin 3 and 4 and cartilage oligomeric matrix proteins contain a five-stranded coiled-coil domain represented by this entry. This domain has a binding site between two internal rings formed by Leu37 and Thr40 [].; PDB: 1MZ9_D 1FBM_A 1VDF_E.
Probab=44.72 E-value=55 Score=21.26 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 038457 220 EIEKKLLDLQQIYMDMAVLVEAQG 243 (308)
Q Consensus 220 ~ie~~I~EL~~lF~dla~LV~~Qg 243 (308)
.|-.++.++++++.+|-.++.+|=
T Consensus 5 ~l~~ql~~l~~~l~elk~~l~~Q~ 28 (45)
T PF11598_consen 5 QLIKQLSELNQMLQELKELLRQQI 28 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455778888888888888887764
No 92
>PHA02650 hypothetical protein; Provisional
Probab=44.49 E-value=25 Score=25.62 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=14.2
Q ss_pred cccchHHHHHHHHHHHHHHHHH
Q 038457 276 SSRKWMCIAIIILLIIVAVIVV 297 (308)
Q Consensus 276 k~rk~~c~~i~iviii~~iii~ 297 (308)
++++|.-+.+++++++++++++
T Consensus 42 ~~~~~~~~~~~ii~i~~v~i~~ 63 (81)
T PHA02650 42 KSVSWFNGQNFIFLIFSLIIVA 63 (81)
T ss_pred cccCCchHHHHHHHHHHHHHHH
Confidence 4567788887777655555544
No 93
>PHA02844 putative transmembrane protein; Provisional
Probab=44.38 E-value=26 Score=25.20 Aligned_cols=28 Identities=25% Similarity=0.132 Sum_probs=18.0
Q ss_pred HhhcccchHHHHHHHHHHHHHHHHHHHh
Q 038457 273 HQKSSRKWMCIAIIILLIIVAVIVVGVI 300 (308)
Q Consensus 273 ~qkk~rk~~c~~i~iviii~~iii~~i~ 300 (308)
+.++++++.-+.+++++++++++++.++
T Consensus 38 ~~~~~~~~~~~~~~ii~i~~v~~~~~~~ 65 (75)
T PHA02844 38 VNKNNVCSSSTKIWILTIIFVVFATFLT 65 (75)
T ss_pred ccccccCChhHHHHHHHHHHHHHHHHHH
Confidence 4455667888888887666555555443
No 94
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=43.42 E-value=1.4e+02 Score=22.38 Aligned_cols=21 Identities=14% Similarity=0.381 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 038457 90 DEVGKIARNVKAKIEAINREN 110 (308)
Q Consensus 90 ~~i~~~~~~ik~~l~~l~~~~ 110 (308)
.++....+.++..|+.++...
T Consensus 35 ~e~~~~~~eL~~~l~~ie~~L 55 (97)
T PF09177_consen 35 EELKWLKRELRNALQSIEWDL 55 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555443
No 95
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=42.76 E-value=2.3e+02 Score=24.74 Aligned_cols=28 Identities=14% Similarity=0.522 Sum_probs=19.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhccccC
Q 038457 278 RKWMCIAIIILLIIVAVIVVGVIKPWKS 305 (308)
Q Consensus 278 rk~~c~~i~iviii~~iii~~i~~~~~~ 305 (308)
.-|--|+++++=|++|+++.+++=||+.
T Consensus 151 STwgT~~lmgvNvllFl~~~~~~EPwkR 178 (207)
T PF05546_consen 151 STWGTWGLMGVNVLLFLVAQLLVEPWKR 178 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCHHHH
Confidence 3466677777777777777777779864
No 96
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=42.61 E-value=46 Score=20.51 Aligned_cols=14 Identities=29% Similarity=0.942 Sum_probs=6.9
Q ss_pred cchHHHHHHHHHHH
Q 038457 278 RKWMCIAIIILLII 291 (308)
Q Consensus 278 rk~~c~~i~iviii 291 (308)
|+|+...+..++++
T Consensus 14 r~Wi~F~l~mi~vF 27 (38)
T PF09125_consen 14 RGWIAFALAMILVF 27 (38)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHH
Confidence 45666554444333
No 97
>PF06789 UPF0258: Uncharacterised protein family (UPF0258); InterPro: IPR009626 This is a group of proteins of unknown function.
Probab=41.39 E-value=16 Score=30.11 Aligned_cols=30 Identities=20% Similarity=0.350 Sum_probs=12.5
Q ss_pred HHHHhhcccchHHHHHHHHHHHHHHHHHHH
Q 038457 270 AKKHQKSSRKWMCIAIIILLIIVAVIVVGV 299 (308)
Q Consensus 270 A~~~qkk~rk~~c~~i~iviii~~iii~~i 299 (308)
|...+.|.-|..+++++++++++++|++||
T Consensus 125 ae~kr~K~Cki~~Li~~~vc~~ilVivVpi 154 (159)
T PF06789_consen 125 AELKRSKVCKIFALIVLAVCAVILVIVVPI 154 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheEEEEEEE
Confidence 333445544444444444433444444433
No 98
>COG4640 Predicted membrane protein [Function unknown]
Probab=41.27 E-value=44 Score=31.97 Aligned_cols=22 Identities=18% Similarity=0.128 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHhccc
Q 038457 282 CIAIIILLIIVAVIVVGVIKPW 303 (308)
Q Consensus 282 c~~i~iviii~~iii~~i~~~~ 303 (308)
.|-++++++|++++++...+.|
T Consensus 54 ~was~a~~lIlii~~~~fgk~f 75 (465)
T COG4640 54 PWASGAFILILIIILFFFGKNF 75 (465)
T ss_pred hhHHHHHHHHHHHHHHHHhhcc
Confidence 3333333334443444344444
No 99
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.11 E-value=1.9e+02 Score=25.80 Aligned_cols=20 Identities=25% Similarity=0.375 Sum_probs=12.0
Q ss_pred HHHHhhHHHHHHHhhHHHHH
Q 038457 238 LVEAQGEILDNIESQVSNAV 257 (308)
Q Consensus 238 LV~~Qge~iD~Ie~Nv~~a~ 257 (308)
|+.+|.+.+|.|+.-|....
T Consensus 146 m~~eQDe~Ld~ls~ti~rlk 165 (235)
T KOG3202|consen 146 MLQEQDEGLDGLSATVQRLK 165 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666655443
No 100
>PHA03240 envelope glycoprotein M; Provisional
Probab=40.98 E-value=27 Score=30.51 Aligned_cols=21 Identities=19% Similarity=0.384 Sum_probs=12.8
Q ss_pred chHHHHHHHHHHHHHHHHHHH
Q 038457 279 KWMCIAIIILLIIVAVIVVGV 299 (308)
Q Consensus 279 k~~c~~i~iviii~~iii~~i 299 (308)
-=..|+|++++||++||++..
T Consensus 211 aH~~WIiilIIiIiIIIL~cf 231 (258)
T PHA03240 211 AHIAWIFIAIIIIIVIILFFF 231 (258)
T ss_pred chHhHHHHHHHHHHHHHHHHH
Confidence 457777777666555555543
No 101
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=40.52 E-value=1.3e+02 Score=21.35 Aligned_cols=12 Identities=42% Similarity=0.476 Sum_probs=7.0
Q ss_pred HHHHHHhhHHHH
Q 038457 245 ILDNIESQVSNA 256 (308)
Q Consensus 245 ~iD~Ie~Nv~~a 256 (308)
-+|.||.-|+.+
T Consensus 20 rLd~iEeKVEf~ 31 (70)
T TIGR01149 20 RLDEIEEKVEFV 31 (70)
T ss_pred HHHHHHHHHHHH
Confidence 456666665554
No 102
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=40.39 E-value=39 Score=23.20 Aligned_cols=11 Identities=27% Similarity=0.386 Sum_probs=4.6
Q ss_pred HHHHHHHHHHh
Q 038457 264 TTALQNAKKHQ 274 (308)
Q Consensus 264 ~~~L~kA~~~q 274 (308)
.+-|.|-++.+
T Consensus 30 ~eil~ker~R~ 40 (64)
T COG4068 30 GEILNKERKRQ 40 (64)
T ss_pred HHHHHHHHHHH
Confidence 33454444433
No 103
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=40.19 E-value=3.6e+02 Score=26.26 Aligned_cols=27 Identities=11% Similarity=0.169 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038457 126 DRSRMNVTNALTKRFKELMTEFQTLRQ 152 (308)
Q Consensus 126 ~r~r~~~~~~L~~~f~~~~~~f~~~q~ 152 (308)
..+......-|..++..+...|--+++
T Consensus 298 L~lQedL~~DL~dDL~ka~eTf~lVeq 324 (426)
T smart00806 298 LTLQEDLIADLKEDLEKAEETFDLVEQ 324 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666777888888899999988764
No 104
>PF08412 Ion_trans_N: Ion transport protein N-terminal; InterPro: IPR013621 This domain is found to the N terminus of IPR005821 from INTERPRO in voltage- and cyclic nucleotide-gated K/Na ion channels.
Probab=39.66 E-value=89 Score=22.74 Aligned_cols=24 Identities=13% Similarity=0.290 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccc
Q 038457 281 MCIAIIILLIIVAVIVVGVIKPWK 304 (308)
Q Consensus 281 ~c~~i~iviii~~iii~~i~~~~~ 304 (308)
.|=+++++++++.++++|+...|-
T Consensus 48 ~WD~~m~~~~~~~~~~iP~~isF~ 71 (77)
T PF08412_consen 48 YWDLIMLILLLYNLIIIPFRISFF 71 (77)
T ss_pred HHHHHHHHHHHHHHHHHhhhheEe
Confidence 444555666666677788777663
No 105
>PRK00736 hypothetical protein; Provisional
Probab=39.42 E-value=1.4e+02 Score=21.10 Aligned_cols=45 Identities=9% Similarity=0.214 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHH
Q 038457 218 VKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNVQS 262 (308)
Q Consensus 218 I~~ie~~I~EL~~lF~dla~LV~~Qge~iD~Ie~Nv~~a~~~v~~ 262 (308)
|..||..+.-.-....+|+..|..|...||....-+..-.+.+..
T Consensus 7 i~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 7 LTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777788888888888998888888777776665543
No 106
>TIGR00847 ccoS cytochrome oxidase maturation protein, cbb3-type. CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus.
Probab=39.40 E-value=44 Score=22.30 Aligned_cols=25 Identities=36% Similarity=0.376 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCC
Q 038457 282 CIAIIILLIIVAVIVVGVIKPWKSG 306 (308)
Q Consensus 282 c~~i~iviii~~iii~~i~~~~~~~ 306 (308)
.++|.+.+++.++.++..+-..++|
T Consensus 5 ~~LIpiSl~l~~~~l~~f~Wavk~G 29 (51)
T TIGR00847 5 TILIPISLLLGGVGLVAFLWSLKSG 29 (51)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccC
Confidence 3444445455554555455555666
No 107
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=39.28 E-value=3.2e+02 Score=25.32 Aligned_cols=28 Identities=14% Similarity=0.265 Sum_probs=16.3
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhh
Q 038457 83 KRMEKDVDEVGKIARNVKAKIEAINREN 110 (308)
Q Consensus 83 ~~i~~~~~~i~~~~~~ik~~l~~l~~~~ 110 (308)
.+++.+-..|-+....+...|+.|.++.
T Consensus 230 ~QM~s~~~nIe~~~~~~~~~Ldklh~ei 257 (384)
T KOG0972|consen 230 EQMNSMHKNIEQKVGNVGPYLDKLHKEI 257 (384)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHH
Confidence 4455555566666666666666665554
No 108
>PF07438 DUF1514: Protein of unknown function (DUF1514); InterPro: IPR009999 This entry is represented by Bacteriophage phi PVL, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Staphylococcus aureus and related bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=38.91 E-value=29 Score=24.26 Aligned_cols=16 Identities=38% Similarity=0.478 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 038457 282 CIAIIILLIIVAVIVV 297 (308)
Q Consensus 282 c~~i~iviii~~iii~ 297 (308)
|+++.|++-|++.|.+
T Consensus 2 WIiiSIvLai~lLI~l 17 (66)
T PF07438_consen 2 WIIISIVLAIALLISL 17 (66)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 3333343333333333
No 109
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=38.73 E-value=1.9e+02 Score=26.06 Aligned_cols=24 Identities=4% Similarity=0.336 Sum_probs=12.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHH
Q 038457 78 MKAIKKRMEKDVDEVGKIARNVKA 101 (308)
Q Consensus 78 ~~~l~~~i~~~~~~i~~~~~~ik~ 101 (308)
...|+..++.+..++.++.++=+.
T Consensus 70 v~~LrG~~E~~~~~l~~~~~rq~~ 93 (263)
T PRK10803 70 IDSLRGQIQENQYQLNQVVERQKQ 93 (263)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHH
Confidence 344566666666555555444333
No 110
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=37.91 E-value=1.3e+02 Score=20.52 Aligned_cols=51 Identities=12% Similarity=0.145 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 038457 221 IEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNVQSGTTALQNAK 271 (308)
Q Consensus 221 ie~~I~EL~~lF~dla~LV~~Qge~iD~Ie~Nv~~a~~~v~~g~~~L~kA~ 271 (308)
-...+.|.-++=.+...-...|++.|.++...+..+..++..+..-|.+-.
T Consensus 13 s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I~ 63 (66)
T PF12352_consen 13 SHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRIS 63 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 334444555555555566778999999999999999999999998887643
No 111
>COG3736 VirB8 Type IV secretory pathway, component VirB8 [Intracellular trafficking and secretion]
Probab=37.78 E-value=90 Score=27.91 Aligned_cols=23 Identities=30% Similarity=0.716 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcc
Q 038457 280 WMCIAIIILLIIVAVIVVGVIKP 302 (308)
Q Consensus 280 ~~c~~i~iviii~~iii~~i~~~ 302 (308)
|+.|+++.++.+++++.+.++.|
T Consensus 44 ~~va~~~~~l~v~~~~~Ia~llP 66 (239)
T COG3736 44 WRVAILFTLLAVAAVIAIAILLP 66 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Confidence 44444454445555555555555
No 112
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=37.64 E-value=34 Score=29.86 Aligned_cols=22 Identities=18% Similarity=0.454 Sum_probs=10.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHh
Q 038457 278 RKWMCIAIIILLIIVAVIVVGVI 300 (308)
Q Consensus 278 rk~~c~~i~iviii~~iii~~i~ 300 (308)
.|..++ ||+++|.+||+|.-+|
T Consensus 126 ~K~amL-IClIIIAVLfLICT~L 147 (227)
T PF05399_consen 126 NKMAML-ICLIIIAVLFLICTLL 147 (227)
T ss_pred cchhHH-HHHHHHHHHHHHHHHH
Confidence 445554 4444444444444444
No 113
>PF03597 CcoS: Cytochrome oxidase maturation protein cbb3-type; InterPro: IPR004714 Cytochrome cbb3 oxidases are found almost exclusively in Proteobacteria, and represent a distinctive class of proton-pumping respiratory haem-copper oxidases (HCO) that lack many of the key structural features that contribute to the reaction cycle of the intensely studied mitochondrial cytochrome c oxidase (CcO). Expression of cytochrome cbb3 oxidase allows human pathogens to colonise anoxic tissues and agronomically important diazotrophs to sustain nitrogen fixation []. Genes encoding a cytochrome cbb3 oxidase were initially designated fixNOQP (ccoNOQP), the ccoNOQP operon is always found close to a second gene cluster, known as fixGHIS (ccoGHIS) whose expression is necessary for the assembly of a functional cbb3 oxidase. On the basis of their derived amino acid sequences each of the four proteins encoded by the ccoGHIS operon are thought to be membrane-bound. It has been suggested that they may function in concert as a multi-subunit complex, possibly playing a role in the uptake and metabolism of copper required for the assembly of the binuclear centre of cytochrome cbb3 oxidase.
Probab=37.53 E-value=47 Score=21.54 Aligned_cols=24 Identities=29% Similarity=0.353 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHhccccCC
Q 038457 283 IAIIILLIIVAVIVVGVIKPWKSG 306 (308)
Q Consensus 283 ~~i~iviii~~iii~~i~~~~~~~ 306 (308)
+.|.+.+++.++.++..+-..++|
T Consensus 5 ~lip~sl~l~~~~l~~f~Wavk~G 28 (45)
T PF03597_consen 5 ILIPVSLILGLIALAAFLWAVKSG 28 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccC
Confidence 344444444444444444455655
No 114
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=37.44 E-value=47 Score=27.26 Aligned_cols=24 Identities=8% Similarity=-0.100 Sum_probs=10.7
Q ss_pred hhcccchHHHHHHHHHHHHHHHHH
Q 038457 274 QKSSRKWMCIAIIILLIIVAVIVV 297 (308)
Q Consensus 274 qkk~rk~~c~~i~iviii~~iii~ 297 (308)
.+++..|.++++++++|+++++++
T Consensus 113 ~~~~~~~~i~~~i~g~ll~i~~gi 136 (145)
T PF10661_consen 113 TKKPISPTILLSIGGILLAICGGI 136 (145)
T ss_pred hccchhHHHHHHHHHHHHHHHHHH
Confidence 344444555554444444433333
No 115
>PF15106 TMEM156: TMEM156 protein family
Probab=37.36 E-value=37 Score=29.59 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=12.1
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHhc
Q 038457 276 SSRKWMCIAIIILLIIVAVIVVGVIK 301 (308)
Q Consensus 276 k~rk~~c~~i~iviii~~iii~~i~~ 301 (308)
.+-|..| .+++++|+++.|+++|.+
T Consensus 172 CsmKITW-YvLVllVfiflii~iI~K 196 (226)
T PF15106_consen 172 CSMKITW-YVLVLLVFIFLIILIIYK 196 (226)
T ss_pred eehhhHH-HHHHHHHHHHHHHHHHHH
Confidence 3334444 444555555555555544
No 116
>KOG1693 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.15 E-value=1.6e+02 Score=25.58 Aligned_cols=18 Identities=17% Similarity=0.556 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 038457 212 QERHDAVKEIEKKLLDLQ 229 (308)
Q Consensus 212 ~~R~~eI~~ie~~I~EL~ 229 (308)
..|....-..|.++.+++
T Consensus 127 ~~~~~~~~~mena~~~I~ 144 (209)
T KOG1693|consen 127 SNRDTALTQMENAIVEIH 144 (209)
T ss_pred cccchHHHHHHHHHHHHH
Confidence 344555556666666655
No 117
>PRK02793 phi X174 lysis protein; Provisional
Probab=37.10 E-value=1.5e+02 Score=21.08 Aligned_cols=47 Identities=13% Similarity=0.186 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHH
Q 038457 216 DAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNVQS 262 (308)
Q Consensus 216 ~eI~~ie~~I~EL~~lF~dla~LV~~Qge~iD~Ie~Nv~~a~~~v~~ 262 (308)
..|..||..+.=.-+...+|+..|..|...||+....+..-.+.+..
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34666777777777777778888888888888888777766555543
No 118
>PF10027 DUF2269: Predicted integral membrane protein (DUF2269); InterPro: IPR018729 Members of this family of bacterial hypothetical integral membrane proteins have no known function.
Probab=36.84 E-value=43 Score=27.27 Aligned_cols=32 Identities=28% Similarity=0.653 Sum_probs=25.0
Q ss_pred HHHhhcccchHHHHHHHHHHHHHHHHHHHhcc
Q 038457 271 KKHQKSSRKWMCIAIIILLIIVAVIVVGVIKP 302 (308)
Q Consensus 271 ~~~qkk~rk~~c~~i~iviii~~iii~~i~~~ 302 (308)
.+|++..|+|..+..+..++.++++.+-|+||
T Consensus 119 ~~y~~~~~~~~~~g~~~~~~~~~i~~LMV~KP 150 (150)
T PF10027_consen 119 PEYKRLFRRWFILGWIAFLLLVVIVVLMVFKP 150 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 46777778888888887777777777877776
No 119
>PHA03395 p10 fibrous body protein; Provisional
Probab=36.48 E-value=1.8e+02 Score=21.69 Aligned_cols=48 Identities=13% Similarity=0.345 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhcCChhhHHHHHHHHHhhHHHHHHHH
Q 038457 47 EIEKQVDKLSALLKKLKDANEESKSVTKASEMKAIKKRMEKDVDEVGKIA 96 (308)
Q Consensus 47 ~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~ 96 (308)
-|+.+|..+..++..|+........ +..+..++..+++.....+..+.
T Consensus 8 ~Ir~dIkavd~KVdalQ~~V~~l~~--nlpdv~~l~~kLdaq~~~Ltti~ 55 (87)
T PHA03395 8 LIRQDIKAVSDKVDALQAAVDDVRA--NLPDVTEINEKLDAQSASLDTIS 55 (87)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHh--cCCcHHHHHHHHHhHHHHHHHHH
Confidence 3555555555565555544443321 22345567788888776664433
No 120
>COG2966 Uncharacterized conserved protein [Function unknown]
Probab=35.50 E-value=58 Score=29.32 Aligned_cols=47 Identities=13% Similarity=0.270 Sum_probs=28.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Q 038457 247 DNIESQVSNAVTNVQSGTTALQNAKKHQKSSRKWMCIAIIILLIIVA 293 (308)
Q Consensus 247 D~Ie~Nv~~a~~~v~~g~~~L~kA~~~qkk~rk~~c~~i~iviii~~ 293 (308)
++|-..|++=..+++.|.+.|.+=.+...+.++|++.+...+....+
T Consensus 93 ~~i~~~v~~~~~~~e~a~~~l~~i~~~~~~y~~~l~~~~~g~~~~~f 139 (250)
T COG2966 93 NRISRAVEHGRLDLEEAHKKLDEIQKQPLRYSRWLVLLMAGLAAAAF 139 (250)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHhhhCccccccHHHHHHHHHHHHHH
Confidence 33444445555567888888887766666777887655544444333
No 121
>PF15102 TMEM154: TMEM154 protein family
Probab=35.46 E-value=14 Score=30.30 Aligned_cols=7 Identities=29% Similarity=0.206 Sum_probs=3.0
Q ss_pred hHHHHHH
Q 038457 280 WMCIAII 286 (308)
Q Consensus 280 ~~c~~i~ 286 (308)
.++++|.
T Consensus 58 iLmIlIP 64 (146)
T PF15102_consen 58 ILMILIP 64 (146)
T ss_pred EEEEeHH
Confidence 3444444
No 122
>PHA03054 IMV membrane protein; Provisional
Probab=35.11 E-value=51 Score=23.48 Aligned_cols=24 Identities=8% Similarity=0.211 Sum_probs=16.1
Q ss_pred cccchHHHHHHHHHHHHHHHHHHH
Q 038457 276 SSRKWMCIAIIILLIIVAVIVVGV 299 (308)
Q Consensus 276 k~rk~~c~~i~iviii~~iii~~i 299 (308)
+++++.-+.+++++++++++++.+
T Consensus 41 ~~~~~~~~~~~ii~l~~v~~~~l~ 64 (72)
T PHA03054 41 NNTGCWGWYWLIIIFFIVLILLLL 64 (72)
T ss_pred cccCCchHHHHHHHHHHHHHHHHH
Confidence 456788888888876666555443
No 123
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=35.07 E-value=1.4e+02 Score=19.99 Aligned_cols=52 Identities=17% Similarity=0.292 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 038457 223 KKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNVQSGTTALQNAKKHQ 274 (308)
Q Consensus 223 ~~I~EL~~lF~dla~LV~~Qge~iD~Ie~Nv~~a~~~v~~g~~~L~kA~~~q 274 (308)
..|.+|+.-..+|..+..+=|..|+.=..-++....+|+.+...+.++.+.-
T Consensus 4 ~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l 55 (63)
T PF05739_consen 4 EELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKL 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555555555555555555555554443
No 124
>PTZ00208 65 kDa invariant surface glycoprotein; Provisional
Probab=34.85 E-value=38 Score=32.45 Aligned_cols=18 Identities=39% Similarity=0.488 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 038457 46 QEIEKQVDKLSALLKKLK 63 (308)
Q Consensus 46 ~~I~~~I~~i~~~i~~L~ 63 (308)
..|..++..|..-+..|.
T Consensus 69 ~~i~~~~dri~~wLe~l~ 86 (436)
T PTZ00208 69 GYIEFELDRLDYWLEKLN 86 (436)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 344445555555555554
No 125
>PRK13872 conjugal transfer protein TrbF; Provisional
Probab=34.56 E-value=1.1e+02 Score=27.01 Aligned_cols=6 Identities=0% Similarity=-0.307 Sum_probs=2.3
Q ss_pred HHHhcc
Q 038457 297 VGVIKP 302 (308)
Q Consensus 297 ~~i~~~ 302 (308)
+..+.|
T Consensus 59 v~~l~p 64 (228)
T PRK13872 59 LVWQSA 64 (228)
T ss_pred HHHhhc
Confidence 333334
No 126
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=34.33 E-value=3.4e+02 Score=25.40 Aligned_cols=18 Identities=11% Similarity=-0.029 Sum_probs=9.2
Q ss_pred CchHHHHHHHHHHHHHHH
Q 038457 35 DMGMEGFNKQIQEIEKQV 52 (308)
Q Consensus 35 ~~~~~~f~~~v~~I~~~I 52 (308)
..+...|.+.+++.-..+
T Consensus 231 re~~d~W~~~ae~~~~e~ 248 (320)
T TIGR01834 231 KALYDLWVIAAEEAYAEV 248 (320)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555666555544433
No 127
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=34.21 E-value=84 Score=23.30 Aligned_cols=16 Identities=13% Similarity=0.758 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 038457 281 MCIAIIILLIIVAVIV 296 (308)
Q Consensus 281 ~c~~i~iviii~~iii 296 (308)
+||+++++++++++++
T Consensus 40 ic~~lVfVii~lFi~l 55 (84)
T PF06143_consen 40 ICCFLVFVIIVLFILL 55 (84)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444333333333333
No 128
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=34.02 E-value=4.1e+02 Score=25.03 Aligned_cols=22 Identities=14% Similarity=0.321 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 038457 48 IEKQVDKLSALLKKLKDANEES 69 (308)
Q Consensus 48 I~~~I~~i~~~i~~L~~l~~~~ 69 (308)
|..+...+.+.-.+|++.|+..
T Consensus 2 ~~eEW~eL~~efq~Lqethr~Y 23 (330)
T PF07851_consen 2 CEEEWEELQKEFQELQETHRSY 23 (330)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666666543
No 129
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=33.72 E-value=1.7e+02 Score=28.24 Aligned_cols=16 Identities=19% Similarity=0.453 Sum_probs=6.8
Q ss_pred cchHHHHHHHHHHHHH
Q 038457 278 RKWMCIAIIILLIIVA 293 (308)
Q Consensus 278 rk~~c~~i~iviii~~ 293 (308)
|++..++++++.++++
T Consensus 185 Rw~~~~~lL~l~l~ic 200 (406)
T PF04906_consen 185 RWLAYLGLLILDLVIC 200 (406)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444333333
No 130
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=33.67 E-value=2.1e+02 Score=21.64 Aligned_cols=64 Identities=11% Similarity=0.254 Sum_probs=38.8
Q ss_pred hhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 038457 206 NTLEEIQERHDAVK-EIEKKLLDLQQIYMDMAVLVEA-QGEILDNIESQVSNAVTNVQSGTTALQN 269 (308)
Q Consensus 206 ~~l~~i~~R~~eI~-~ie~~I~EL~~lF~dla~LV~~-Qge~iD~Ie~Nv~~a~~~v~~g~~~L~k 269 (308)
..+..+......+. +.+.--.++..-|..|...+.+ ...+++.|+..-.........-...+..
T Consensus 21 ~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~ 86 (127)
T smart00502 21 DALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESLTQ 86 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444554444432 3444456677788888888875 4568888888776665555554444443
No 131
>PF10749 DUF2534: Protein of unknown function (DUF2534); InterPro: IPR019685 This entry represents proteins with unknown function, and appear to be restricted to Enterobacteriaceae.
Probab=33.42 E-value=54 Score=24.10 Aligned_cols=7 Identities=14% Similarity=0.496 Sum_probs=2.8
Q ss_pred ccchHHH
Q 038457 277 SRKWMCI 283 (308)
Q Consensus 277 ~rk~~c~ 283 (308)
.||.+++
T Consensus 12 ~kkFl~~ 18 (85)
T PF10749_consen 12 GKKFLLA 18 (85)
T ss_pred hhHHHHH
Confidence 3444433
No 132
>COG3197 FixS Uncharacterized protein, possibly involved in nitrogen fixation [Inorganic ion transport and metabolism]
Probab=33.19 E-value=39 Score=23.14 Aligned_cols=24 Identities=29% Similarity=0.275 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHhccccCC
Q 038457 283 IAIIILLIIVAVIVVGVIKPWKSG 306 (308)
Q Consensus 283 ~~i~iviii~~iii~~i~~~~~~~ 306 (308)
+++.+.++.+++++...+-..++|
T Consensus 6 ~Lipvsi~l~~v~l~~flWavksg 29 (58)
T COG3197 6 ILIPVSILLGAVGLGAFLWAVKSG 29 (58)
T ss_pred eHHHHHHHHHHHHHHHHHHhcccC
Confidence 445555555555555555566666
No 133
>PF10814 DUF2562: Protein of unknown function (DUF2562); InterPro: IPR024245 This protein of unknown function appears to be found predominantly in Mycobacterium spp.
Probab=33.09 E-value=2e+02 Score=22.94 Aligned_cols=40 Identities=18% Similarity=0.305 Sum_probs=23.1
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHhhccc-chHHHHHHHH
Q 038457 249 IESQVSNAVTNVQSGTTALQNAKKHQKSSR-KWMCIAIIIL 288 (308)
Q Consensus 249 Ie~Nv~~a~~~v~~g~~~L~kA~~~qkk~r-k~~c~~i~iv 288 (308)
|-.-...|++-|..==.-|.+|++.+++.| .|++.++.++
T Consensus 60 la~elaAAqevV~~LP~alq~aR~~~rr~rRplliagv~~~ 100 (133)
T PF10814_consen 60 LAQELAAAQEVVANLPQALQGARRRRRRRRRPLLIAGVAVA 100 (133)
T ss_pred HhhHHHHHHHHHhhhHHHHHHHHHhccccccchHHHHHHHH
Confidence 333445566666655667778877766644 4655554333
No 134
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=32.98 E-value=71 Score=21.24 Aligned_cols=17 Identities=18% Similarity=0.436 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHhc
Q 038457 285 IIILLIIVAVIVVGVIK 301 (308)
Q Consensus 285 i~iviii~~iii~~i~~ 301 (308)
++++++++.+.+.-+++
T Consensus 9 i~iv~~lLg~~I~~~~K 25 (50)
T PF12606_consen 9 IFIVMGLLGLSICTTLK 25 (50)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 33333333333333444
No 135
>PRK02119 hypothetical protein; Provisional
Probab=32.28 E-value=1.9e+02 Score=20.68 Aligned_cols=47 Identities=13% Similarity=0.258 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHH
Q 038457 216 DAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNVQS 262 (308)
Q Consensus 216 ~eI~~ie~~I~EL~~lF~dla~LV~~Qge~iD~Ie~Nv~~a~~~v~~ 262 (308)
..|..||..+.=.-+...+|+..|..|...||.....+..-...+..
T Consensus 9 ~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 9 NRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44677777777777778888888888998888888877776555543
No 136
>PRK04406 hypothetical protein; Provisional
Probab=32.18 E-value=1.9e+02 Score=20.78 Aligned_cols=46 Identities=15% Similarity=0.260 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHH
Q 038457 216 DAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNVQ 261 (308)
Q Consensus 216 ~eI~~ie~~I~EL~~lF~dla~LV~~Qge~iD~Ie~Nv~~a~~~v~ 261 (308)
..|..||..+.=.-....+|+..|..|...||.....+..-.+.+.
T Consensus 11 ~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~ 56 (75)
T PRK04406 11 ERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVK 56 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466677777777777777778888888888888877776655553
No 137
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=31.99 E-value=5.7e+02 Score=26.15 Aligned_cols=38 Identities=24% Similarity=0.316 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Q 038457 214 RHDAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIES 251 (308)
Q Consensus 214 R~~eI~~ie~~I~EL~~lF~dla~LV~~Qge~iD~Ie~ 251 (308)
+....++.-+.+..||+.|.+|-..|.+=|...-.|.+
T Consensus 545 kDe~~rkaYK~La~lh~~c~~Li~~v~~tG~~~rEird 582 (594)
T PF05667_consen 545 KDEAARKAYKLLASLHENCSQLIETVEETGTISREIRD 582 (594)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 45668899999999999999999999999988666543
No 138
>COG5278 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=31.29 E-value=3.6e+02 Score=23.56 Aligned_cols=11 Identities=18% Similarity=0.428 Sum_probs=4.9
Q ss_pred HHHHHHHHHHH
Q 038457 213 ERHDAVKEIEK 223 (308)
Q Consensus 213 ~R~~eI~~ie~ 223 (308)
++++-+..++.
T Consensus 105 ~~~~~l~~l~~ 115 (207)
T COG5278 105 ELLESLDDLEP 115 (207)
T ss_pred HHHHHHHHHHH
Confidence 34444444444
No 139
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=31.03 E-value=1.6e+02 Score=19.45 Aligned_cols=57 Identities=19% Similarity=0.260 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 038457 217 AVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNVQSGTTALQNAKKH 273 (308)
Q Consensus 217 eI~~ie~~I~EL~~lF~dla~LV~~Qge~iD~Ie~Nv~~a~~~v~~g~~~L~kA~~~ 273 (308)
.+.+-...+..|+....++..+..+=|.+|+.=...++....++..+...+.+|.+.
T Consensus 6 ~~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~~~ 62 (66)
T smart00397 6 MEEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANKR 62 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 345555666677777777777766666666666666777777777777777666544
No 140
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=30.88 E-value=4.9e+02 Score=25.04 Aligned_cols=19 Identities=11% Similarity=0.296 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 038457 89 VDEVGKIARNVKAKIEAIN 107 (308)
Q Consensus 89 ~~~i~~~~~~ik~~l~~l~ 107 (308)
+.++.+...++.++|+.++
T Consensus 100 iaqlqkkL~~y~~rLkeie 118 (455)
T KOG3850|consen 100 IAQLQKKLEQYHRRLKEIE 118 (455)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3445555566677777776
No 141
>PF03653 UPF0093: Uncharacterised protein family (UPF0093); InterPro: IPR005265 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are predicted to be integral membrane proteins (with several transmembrane segments). There is some indirect indication of a link between this protein and the function or assembly of cytochromes: in Escherichia coli, strains overproducing this protein turn pink, perhaps because of an excess of accumulated haems [].
Probab=30.78 E-value=44 Score=27.41 Aligned_cols=26 Identities=23% Similarity=0.540 Sum_probs=17.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhccc
Q 038457 278 RKWMCIAIIILLIIVAVIVVGVIKPW 303 (308)
Q Consensus 278 rk~~c~~i~iviii~~iii~~i~~~~ 303 (308)
+.+.++--+..+++++++++.++|||
T Consensus 122 ~~~r~~nei~~ll~i~Iv~lvv~KPF 147 (147)
T PF03653_consen 122 KFFRIFNEIPTLLLIAIVILVVVKPF 147 (147)
T ss_pred HHHHHHhHHHHHHHHHHHHHheeCCC
Confidence 34455555556666667778888887
No 142
>PF00517 GP41: Retroviral envelope protein; InterPro: IPR000328 This entry represents envelope proteins from a variety of retroviruses. It includes the GP41 subunit of the envelope protein complex from Human immunodeficiency virus (HIV) and Simian-Human immunodeficiency virus (SIV), which mediate membrane fusion during viral entry []. It has a core composed of a six-helix bundle and is folded by its trimeric N- and C-terminal heptad-repeats (NHR and CHR) []. Derivatives of this protein prevent HIV-1 from entering cell lines and primary human CD4+ cells in vitro [], making it an attractive subject of gene therapy studies against HIV and related retroviruses. The entry also represents envelop proteins from Bovine immunodeficiency virus, Feline immunodeficiency virus and Equine infectious anemia virus (EIAV) [, ], as well as the Gp36 protein from Mouse mammary tumor virus (MMTV) and Human endogenous retrovirus (HERV).; GO: 0005198 structural molecule activity, 0019031 viral envelope; PDB: 2EZO_B 2EZQ_B 2EZR_A 2JNR_B 1F23_D 2EZP_A 1JEK_A 2Q7C_A 2Q5U_A 2Q3I_A ....
Probab=30.36 E-value=1.6e+02 Score=25.53 Aligned_cols=15 Identities=7% Similarity=0.253 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHH
Q 038457 214 RHDAVKEIEKKLLDL 228 (308)
Q Consensus 214 R~~eI~~ie~~I~EL 228 (308)
-++++.+++..|.++
T Consensus 106 W~~~i~~~~~~i~~l 120 (204)
T PF00517_consen 106 WEKEISNYTGNIYNL 120 (204)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHhcccHHHHHHH
Confidence 455555555554443
No 143
>PF00482 T2SF: Type II secretion system (T2SS), protein F; InterPro: IPR018076 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) [], have been found to be evolutionary related. These are proteins of about 400 amino acids that are highly hydrophobic and which are thought to be integral protein of the inner membrane. Proteins with this domain form a platform for the type II secretion machinery, as well as the type IV pili and the archaeal flagellae [].; PDB: 2VMA_A 3C1Q_A 2VMB_B 2WHN_B.
Probab=30.32 E-value=1.8e+02 Score=21.48 Aligned_cols=6 Identities=33% Similarity=0.468 Sum_probs=2.2
Q ss_pred HHHHHH
Q 038457 221 IEKKLL 226 (308)
Q Consensus 221 ie~~I~ 226 (308)
++..+.
T Consensus 48 ~~~al~ 53 (124)
T PF00482_consen 48 LEEALE 53 (124)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 333333
No 144
>PHA02673 ORF109 EEV glycoprotein; Provisional
Probab=30.32 E-value=56 Score=27.19 Aligned_cols=13 Identities=31% Similarity=0.567 Sum_probs=6.8
Q ss_pred HHHHHhhcccchH
Q 038457 269 NAKKHQKSSRKWM 281 (308)
Q Consensus 269 kA~~~qkk~rk~~ 281 (308)
...+.||..||++
T Consensus 20 as~~r~k~~~R~i 32 (161)
T PHA02673 20 ASVKRQKAIRRYI 32 (161)
T ss_pred hHHHHHHHHHHHH
Confidence 3445556556653
No 145
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=29.95 E-value=65 Score=22.28 Aligned_cols=24 Identities=17% Similarity=0.289 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHhccccCC
Q 038457 283 IAIIILLIIVAVIVVGVIKPWKSG 306 (308)
Q Consensus 283 ~~i~iviii~~iii~~i~~~~~~~ 306 (308)
++.+.++++++.++..++.|.+.|
T Consensus 13 ~~t~~~~l~fiavi~~ayr~~~K~ 36 (60)
T COG4736 13 WGTIAFTLFFIAVIYFAYRPGKKG 36 (60)
T ss_pred HHHHHHHHHHHHHHHHHhcccchh
Confidence 445555555666666677776554
No 146
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=28.78 E-value=1.4e+02 Score=20.60 Aligned_cols=8 Identities=38% Similarity=0.646 Sum_probs=3.0
Q ss_pred hcccchHH
Q 038457 275 KSSRKWMC 282 (308)
Q Consensus 275 kk~rk~~c 282 (308)
++-|..++
T Consensus 38 ~R~r~~~~ 45 (64)
T COG4068 38 KRQRNFMI 45 (64)
T ss_pred HHHHHHHH
Confidence 33333333
No 147
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=28.59 E-value=3.3e+02 Score=22.64 Aligned_cols=18 Identities=11% Similarity=0.388 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 038457 210 EIQERHDAVKEIEKKLLD 227 (308)
Q Consensus 210 ~i~~R~~eI~~ie~~I~E 227 (308)
-++.|+..++.+-..++.
T Consensus 56 ~lr~Rydrlr~va~rvQ~ 73 (156)
T PF08372_consen 56 SLRMRYDRLRSVAGRVQN 73 (156)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 467788888877766543
No 148
>TIGR00701 conserved hypothetical integral membrane protein. It appears this conserved hypothetical integral membrane protein is found only in gram negative bacteria. Completed genomes that include a member of this family include Rickettsia prowazekii, Synechocystis sp. PCC6803, and Helicobacter pylori. These proteins have 3 (Helicobacter pylori) to 5 (Synechocystis sp. PCC 6803) GES predicted transmembrane regions. Most members have 4 GES predicted transmembrane regions.
Probab=28.51 E-value=45 Score=27.25 Aligned_cols=27 Identities=15% Similarity=0.445 Sum_probs=19.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhcccc
Q 038457 278 RKWMCIAIIILLIIVAVIVVGVIKPWK 304 (308)
Q Consensus 278 rk~~c~~i~iviii~~iii~~i~~~~~ 304 (308)
+.+.+.--+..+++++++++.|+|||.
T Consensus 116 ~~~r~~ne~p~llli~iV~lvV~KPf~ 142 (142)
T TIGR00701 116 KFYRIVNEAPTILMVIIVILVVVKPFD 142 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHheeeCCCC
Confidence 345566666777777777888899983
No 149
>PRK00523 hypothetical protein; Provisional
Probab=28.44 E-value=85 Score=22.53 Aligned_cols=18 Identities=33% Similarity=0.399 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 038457 282 CIAIIILLIIVAVIVVGV 299 (308)
Q Consensus 282 c~~i~iviii~~iii~~i 299 (308)
+.+++|+++|+++++..+
T Consensus 3 ~~~l~I~l~i~~li~G~~ 20 (72)
T PRK00523 3 AIGLALGLGIPLLIVGGI 20 (72)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 345555555555444434
No 150
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.85 E-value=43 Score=31.59 Aligned_cols=22 Identities=14% Similarity=0.615 Sum_probs=12.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHH
Q 038457 278 RKWMCIAIIILLIIVAVIVVGV 299 (308)
Q Consensus 278 rk~~c~~i~iviii~~iii~~i 299 (308)
..|+.++++++++++.++++|+
T Consensus 188 ~~~~vl~~~fvl~tlaivLFPL 209 (372)
T KOG2927|consen 188 LMWQVLGVLFVLVTLAIVLFPL 209 (372)
T ss_pred hhHHHHHHHHHHHHHHHHhccc
Confidence 3455555555666666666655
No 151
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=27.06 E-value=5.5e+02 Score=24.41 Aligned_cols=16 Identities=6% Similarity=0.216 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHHHHHH
Q 038457 37 GMEGFNKQIQEIEKQV 52 (308)
Q Consensus 37 ~~~~f~~~v~~I~~~I 52 (308)
....|-.+|+.+-..+
T Consensus 192 d~~eWklEvERV~PqL 207 (359)
T PF10498_consen 192 DPAEWKLEVERVLPQL 207 (359)
T ss_pred CHHHHHHHHHHHhhhh
Confidence 4567777777766655
No 152
>PF13198 DUF4014: Protein of unknown function (DUF4014)
Probab=27.06 E-value=58 Score=23.23 Aligned_cols=8 Identities=38% Similarity=0.476 Sum_probs=4.7
Q ss_pred HHhhcccc
Q 038457 272 KHQKSSRK 279 (308)
Q Consensus 272 ~~qkk~rk 279 (308)
+|-+++|+
T Consensus 8 ~Y~rrSr~ 15 (72)
T PF13198_consen 8 EYPRRSRK 15 (72)
T ss_pred HccchhHH
Confidence 45566665
No 153
>TIGR02120 GspF general secretion pathway protein F. This membrane protein is a component of the terminal branch complex of the general secretion pathway (GSP), also known as the"Type II" secretion pathway. The GSP transports proteins (generally virulence-associated cell wall hydrolases) across the outer membrase of the bacterial cell. Transport across the inner membrane is often, but not exclusively handled by the Sec system. This model was constructed from the broader subfamily model, pfam00482 which includes components of pilin complexes (PilC) as well as other related genes. GspF is nearly always gene clustered with other GSP subunits. Some genes from Xylella and Xanthomonas strains score below the trusted cutoff due to excessive divergence from the family such that a sequence from Deinococcus which does not appear to be GspF scores higher.
Probab=26.79 E-value=5.5e+02 Score=24.31 Aligned_cols=42 Identities=10% Similarity=0.156 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHH
Q 038457 221 IEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNVQS 262 (308)
Q Consensus 221 ie~~I~EL~~lF~dla~LV~~Qge~iD~Ie~Nv~~a~~~v~~ 262 (308)
+...+......|-++-.-...-||.=-+++.......++.+.
T Consensus 113 ls~al~~~~~~fp~~~~~~i~~GE~sG~L~~~L~~~a~~~~~ 154 (399)
T TIGR02120 113 LADALAQHPRDFPPLYRALVAAGEASGALDAVLERLADYLEE 154 (399)
T ss_pred HHHHHHhCcccCCHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Confidence 445555555566666655556677666777777776666654
No 154
>PTZ00478 Sec superfamily; Provisional
Probab=26.48 E-value=2.1e+02 Score=21.10 Aligned_cols=27 Identities=11% Similarity=0.120 Sum_probs=20.3
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 038457 247 DNIESQVSNAVTNVQSGTTALQNAKKH 273 (308)
Q Consensus 247 D~Ie~Nv~~a~~~v~~g~~~L~kA~~~ 273 (308)
|.+++-++...+.+..+..-+++..+-
T Consensus 14 ~~~~~v~~~~~eF~kds~r~vkrctKP 40 (81)
T PTZ00478 14 NPVGYVVSGVQEFANDSRRLIRKCTKP 40 (81)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 447777888888888888888776544
No 155
>PF01601 Corona_S2: Coronavirus S2 glycoprotein; InterPro: IPR002552 The type I glycoprotein S of Coronavirus, trimers of which constitute the typical viral spikes, is assembled into virions through noncovalent interactions with the M protein. The spike glycoprotein is translated as a large polypeptide that is subsequently cleaved to S1 IPR002551 from INTERPRO and S2 []. Both chimeric S proteins appeared to cause cell fusion when expressed individually, suggesting that they were biologically fully active []. The spike is a type I membrane glycoprotein that possesses a conserved transmembrane anchor and an unusual cysteine-rich (cys) domain that bridges the putative junction of the anchor and the cytoplasmic tail [].; GO: 0006944 cellular membrane fusion, 0046813 virion attachment, binding of host cell surface receptor, 0016021 integral to membrane, 0019031 viral envelope; PDB: 2BEQ_B 2FXP_A 1ZVB_A 1WNC_D 1ZV8_H 1ZV7_B 1WYY_B 1ZVA_A 2BEZ_F 1WDG_A ....
Probab=26.15 E-value=3.7e+02 Score=27.42 Aligned_cols=66 Identities=12% Similarity=0.363 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCChhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 038457 39 EGFNKQIQEIEKQVDKLSALLKKLKDANEESKSVTKASEMKAIKKRMEKDVDEVGKIARNVKAKIEAINRE 109 (308)
Q Consensus 39 ~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~ik~~l~~l~~~ 109 (308)
..|.+....|...+......+.+++.-.++.. ..+..|-.+|...-..|+..+.+|-.+|+.++..
T Consensus 255 ~sFN~Ai~~I~~g~~t~~~Al~KiQ~VVN~q~-----~aL~~L~~qL~nnF~AISssI~dIy~RLd~leAd 320 (610)
T PF01601_consen 255 NSFNKAIGNIQLGFTTTASALNKIQDVVNQQG-----QALNQLTSQLSNNFGAISSSIQDIYNRLDQLEAD 320 (610)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhc
Confidence 46888999999999999999999887776532 2233444555555556677777777778777765
No 156
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=26.10 E-value=6.2e+02 Score=24.62 Aligned_cols=29 Identities=14% Similarity=0.357 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038457 207 TLEEIQERHDAVKEIEKKLLDLQQIYMDM 235 (308)
Q Consensus 207 ~l~~i~~R~~eI~~ie~~I~EL~~lF~dl 235 (308)
.+..+-.....+.+|++...-..++|..+
T Consensus 364 ~~~~~~~~~~~l~~L~Re~~~~r~~ye~l 392 (458)
T COG3206 364 RLSKLPKLQVQLRELEREAEAARSLYETL 392 (458)
T ss_pred HHhhchHhhhHHHHHHHHHHHHHHHHHHH
Confidence 34444555566666777777777777654
No 157
>TIGR02120 GspF general secretion pathway protein F. This membrane protein is a component of the terminal branch complex of the general secretion pathway (GSP), also known as the"Type II" secretion pathway. The GSP transports proteins (generally virulence-associated cell wall hydrolases) across the outer membrase of the bacterial cell. Transport across the inner membrane is often, but not exclusively handled by the Sec system. This model was constructed from the broader subfamily model, pfam00482 which includes components of pilin complexes (PilC) as well as other related genes. GspF is nearly always gene clustered with other GSP subunits. Some genes from Xylella and Xanthomonas strains score below the trusted cutoff due to excessive divergence from the family such that a sequence from Deinococcus which does not appear to be GspF scores higher.
Probab=26.03 E-value=3.2e+02 Score=25.98 Aligned_cols=31 Identities=23% Similarity=0.344 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhHHHHHHHHH
Q 038457 231 IYMDMAVLVEAQGEILDNIESQVSNAVTNVQ 261 (308)
Q Consensus 231 lF~dla~LV~~Qge~iD~Ie~Nv~~a~~~v~ 261 (308)
+|-++..-...-||.-.+++.-...+.++.+
T Consensus 325 ~fp~~~~~mi~~GE~sG~L~~~L~~~a~~~~ 355 (399)
T TIGR02120 325 LFPPLLVHMIASGEKSGQLETMLERAADNQE 355 (399)
T ss_pred CCCHHHHHHHHHHhhhccHHHHHHHHHHHHH
Confidence 5555655566677777777777766665544
No 158
>PF12166 DUF3595: Protein of unknown function (DUF3595); InterPro: IPR021999 This family of proteins is functionally uncharacterised.This family of proteins is found in eukaryotes. Proteins in this family are typically between 578 and 2525 amino acids in length.
Probab=25.83 E-value=53 Score=31.69 Aligned_cols=22 Identities=14% Similarity=0.309 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhc
Q 038457 280 WMCIAIIILLIIVAVIVVGVIK 301 (308)
Q Consensus 280 ~~c~~i~iviii~~iii~~i~~ 301 (308)
+++.+++++++++++|.+|++.
T Consensus 63 K~~~G~~~~~~li~iiw~PLll 84 (422)
T PF12166_consen 63 KYLMGGLLLLLLIIIIWFPLLL 84 (422)
T ss_pred EeeehHHHHHHHHHHHHHHHHH
Confidence 3566677777777777777754
No 159
>PRK14861 tatA twin arginine translocase protein A; Provisional
Probab=25.72 E-value=49 Score=22.94 Aligned_cols=6 Identities=17% Similarity=0.440 Sum_probs=2.6
Q ss_pred HHHhcc
Q 038457 297 VGVIKP 302 (308)
Q Consensus 297 ~~i~~~ 302 (308)
+.++.|
T Consensus 18 llvfGp 23 (61)
T PRK14861 18 LIIFGP 23 (61)
T ss_pred HHhcCc
Confidence 334444
No 160
>PF09164 VitD-bind_III: Vitamin D binding protein, domain III; InterPro: IPR015247 This domain is predominantly found in Vitamin D binding proteins, and adopts a multihelical structure. It is required for formation of an actin 'clamp', allowing the protein to bind to actin []. ; PDB: 1MA9_A 1KW2_A 1KXP_D 1J7E_A 1J78_A 1LOT_A.
Probab=25.71 E-value=1.4e+02 Score=21.08 Aligned_cols=28 Identities=18% Similarity=0.356 Sum_probs=16.4
Q ss_pred HHHHHHHHHhhhccCCCCChHHHHHHHhc
Q 038457 157 EYREVVERRVITVTGTRPDEETIDHLIET 185 (308)
Q Consensus 157 ~~k~~~~r~~~~v~~~~~~~e~i~~~~~~ 185 (308)
+||+++..++.. .-|++++.++.++++.
T Consensus 13 EyKKrL~e~l~~-k~P~at~~~l~~lve~ 40 (68)
T PF09164_consen 13 EYKKRLAERLRA-KLPDATPTELKELVEK 40 (68)
T ss_dssp HHHHHHHHHHHH-H-TTS-HHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HCCCCCHHHHHHHHHH
Confidence 355555433221 1289999999998875
No 161
>PRK09400 secE preprotein translocase subunit SecE; Reviewed
Probab=25.63 E-value=2.3e+02 Score=19.56 Aligned_cols=22 Identities=18% Similarity=0.111 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 038457 252 QVSNAVTNVQSGTTALQNAKKH 273 (308)
Q Consensus 252 Nv~~a~~~v~~g~~~L~kA~~~ 273 (308)
..+...+.+.+...-++.|.+-
T Consensus 6 ~~e~~~~f~~d~~rvl~~~~KP 27 (61)
T PRK09400 6 LQENVKNFLEDYKRVLKVARKP 27 (61)
T ss_pred HHHhHHHHHHHHHHHHHHhcCC
Confidence 4555666666777777666543
No 162
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=25.40 E-value=89 Score=23.76 Aligned_cols=16 Identities=31% Similarity=0.548 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHhc
Q 038457 286 IILLIIVAVIVVGVIK 301 (308)
Q Consensus 286 ~iviii~~iii~~i~~ 301 (308)
.++.|++++|+++|.+
T Consensus 20 A~L~i~~FiILLIi~~ 35 (121)
T PF10669_consen 20 AFLFIVVFIILLIITK 35 (121)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444433
No 163
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=25.31 E-value=1.1e+02 Score=25.78 Aligned_cols=31 Identities=10% Similarity=0.262 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccchHHHH
Q 038457 254 SNAVTNVQSGTTALQNAKKHQKSSRKWMCIA 284 (308)
Q Consensus 254 ~~a~~~v~~g~~~L~kA~~~qkk~rk~~c~~ 284 (308)
..-.-..++|.++|++-.+......+|..++
T Consensus 78 ~~~~~~~~ea~~~L~~I~~~~~~y~~~~~~l 108 (193)
T PF06738_consen 78 VAGQLSLEEAIERLDEIDREPPRYPPWLVIL 108 (193)
T ss_pred hcCCCCHHHHHHHHHHHhhCCCCCCHHHHHH
Confidence 3344456778888877766554555664433
No 164
>PF13937 DUF4212: Domain of unknown function (DUF4212)
Probab=25.07 E-value=91 Score=22.94 Aligned_cols=19 Identities=16% Similarity=0.251 Sum_probs=12.7
Q ss_pred HHHHHhhcccchHHHHHHH
Q 038457 269 NAKKHQKSSRKWMCIAIII 287 (308)
Q Consensus 269 kA~~~qkk~rk~~c~~i~i 287 (308)
++..|-+++++++.+++.+
T Consensus 2 ~~~~yWr~n~rl~~~lL~i 20 (81)
T PF13937_consen 2 PARAYWRKNLRLIAILLAI 20 (81)
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 5778888888766544443
No 165
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=24.98 E-value=1e+02 Score=22.22 Aligned_cols=19 Identities=5% Similarity=0.202 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 038457 218 VKEIEKKLLDLQQIYMDMA 236 (308)
Q Consensus 218 I~~ie~~I~EL~~lF~dla 236 (308)
..+|++...-=.++|..|.
T Consensus 6 ~l~L~R~~~~~~~~Y~~Ll 24 (82)
T PF13807_consen 6 YLRLQRDVEIKRELYETLL 24 (82)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3355555555556666653
No 166
>TIGR02302 aProt_lowcomp conserved hypothetical protein TIGR02302. Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model.
Probab=24.81 E-value=6.3e+02 Score=27.12 Aligned_cols=21 Identities=19% Similarity=0.319 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHhhHHHHH
Q 038457 228 LQQIYMDMAVLVEAQGEILDN 248 (308)
Q Consensus 228 L~~lF~dla~LV~~Qge~iD~ 248 (308)
..+-..+|+.++-+|..+.|.
T Consensus 621 ~~q~m~~L~e~lr~QQ~L~D~ 641 (851)
T TIGR02302 621 MEQQMNKLGELMRKQQQLRDE 641 (851)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666667777664
No 167
>PF06388 DUF1075: Protein of unknown function (DUF1075); InterPro: IPR009432 This family consists of several eukaryotic proteins of unknown function.
Probab=24.76 E-value=1.2e+02 Score=25.03 Aligned_cols=25 Identities=28% Similarity=0.305 Sum_probs=14.9
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHh
Q 038457 276 SSRKWMCIAIIILLIIVAVIVVGVI 300 (308)
Q Consensus 276 k~rk~~c~~i~iviii~~iii~~i~ 300 (308)
|.|-+.|++.+++.||.+++.+.-.
T Consensus 90 k~RIkv~~~Mi~lTiiGc~~mv~sG 114 (146)
T PF06388_consen 90 KARIKVCYIMIALTIIGCIAMVISG 114 (146)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667766666666666555333
No 168
>PRK13673 hypothetical protein; Provisional
Probab=24.65 E-value=82 Score=24.95 Aligned_cols=19 Identities=16% Similarity=-0.017 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 038457 214 RHDAVKEIEKKLLDLQQIY 232 (308)
Q Consensus 214 R~~eI~~ie~~I~EL~~lF 232 (308)
|-=-+.-|-..+.-+...|
T Consensus 38 RLfyil~iiTG~~l~~~~~ 56 (118)
T PRK13673 38 RLFYILIIITGFWLLIRSF 56 (118)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334455555555555544
No 169
>COG1459 PulF Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=24.45 E-value=1.6e+02 Score=28.48 Aligned_cols=41 Identities=20% Similarity=0.349 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHH
Q 038457 221 IEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNVQ 261 (308)
Q Consensus 221 ie~~I~EL~~lF~dla~LV~~Qge~iD~Ie~Nv~~a~~~v~ 261 (308)
+-+.+......|-++-.....-||.--+++.=.+...+|.+
T Consensus 110 ls~al~~~~~~F~~~~~~~v~~gE~~G~L~~~l~~la~y~e 150 (397)
T COG1459 110 LSEALAQLPGVFPDLYVAMVAAGERSGNLDEVLQRLAKYLE 150 (397)
T ss_pred HHHHHHhCcccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 33444445555555555555666666666666655555554
No 170
>PF11337 DUF3139: Protein of unknown function (DUF3139); InterPro: IPR021486 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=24.36 E-value=64 Score=23.68 Aligned_cols=18 Identities=17% Similarity=0.488 Sum_probs=8.2
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 038457 280 WMCIAIIILLIIVAVIVV 297 (308)
Q Consensus 280 ~~c~~i~iviii~~iii~ 297 (308)
+.+++++++++++++.++
T Consensus 8 ~iii~li~i~li~~~~~~ 25 (85)
T PF11337_consen 8 LIIIILIVISLIIGIYYF 25 (85)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 344455555444443333
No 171
>smart00150 SPEC Spectrin repeats.
Probab=24.21 E-value=2.6e+02 Score=19.73 Aligned_cols=54 Identities=15% Similarity=0.229 Sum_probs=33.7
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCChhhHHHHHHHHHhh
Q 038457 34 SDMGMEGFNKQIQEIEKQVDKLSALLKKLKDANEESKSVTKASEMKAIKKRMEKD 88 (308)
Q Consensus 34 ~~~~~~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~~ 88 (308)
........+...+.+..+|......+..+..+-....... +.+...+..+++.+
T Consensus 29 d~~~~~~~~~~~~~~~~e~~~~~~~v~~~~~~~~~L~~~~-~~~~~~i~~~~~~l 82 (101)
T smart00150 29 DLESVEALLKKHEALEAELEAHEERVEALNELGEQLIEEG-HPDAEEIEERLEEL 82 (101)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHH
Confidence 3456777778888888888888888888877766554332 23333344444433
No 172
>PF10864 DUF2663: Protein of unknown function (DUF2663); InterPro: IPR020210 This entry represents a group of uncharacterised transmembrane proteins.
Probab=24.21 E-value=1.4e+02 Score=24.11 Aligned_cols=32 Identities=13% Similarity=0.294 Sum_probs=17.2
Q ss_pred HHHHHHhhcccchHHHHHHHHHHHHHHHHHHH
Q 038457 268 QNAKKHQKSSRKWMCIAIIILLIIVAVIVVGV 299 (308)
Q Consensus 268 ~kA~~~qkk~rk~~c~~i~iviii~~iii~~i 299 (308)
+|..++.++.++|.+..++.+.+.++.+..++
T Consensus 11 ~K~e~l~k~~~~~~~~~l~~~~~~~~y~~~~~ 42 (130)
T PF10864_consen 11 EKWERLKKQHLFWQWLFLFSLFLFFIYFYIKV 42 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666655555444444444333
No 173
>COG3462 Predicted membrane protein [Function unknown]
Probab=24.11 E-value=1.1e+02 Score=23.83 Aligned_cols=21 Identities=19% Similarity=0.456 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHhccccCC
Q 038457 286 IILLIIVAVIVVGVIKPWKSG 306 (308)
Q Consensus 286 ~iviii~~iii~~i~~~~~~~ 306 (308)
+++++++++.+..++..+..|
T Consensus 58 ~vvli~lvvfm~~~~g~~r~~ 78 (117)
T COG3462 58 AVVLIFLVVFMFYILGAVRRG 78 (117)
T ss_pred HHHHHHHHHHHHHHHHHhccc
Confidence 344444444445555555444
No 174
>COG1315 Uncharacterized conserved protein [Function unknown]
Probab=23.93 E-value=5.1e+02 Score=25.93 Aligned_cols=74 Identities=15% Similarity=0.190 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------hhhcCChhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhH
Q 038457 39 EGFNKQIQEIEKQVDKLSALLKKLKDANEE-------SKSVTKASEMKAIKKRMEKDVDEVGKIARNVKAKIEAINRENL 111 (308)
Q Consensus 39 ~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~-------~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~ik~~l~~l~~~~~ 111 (308)
++|++..+.....+...+++++.|..+-.. ..--.-+.+...+...++...-+....+.+++..|+.++....
T Consensus 406 pe~~~~l~~lt~~~~~~ee~l~~Lt~~l~~l~~~~i~~~~~~l~~dk~~~~~~vnn~ki~l~~~ieki~~~l~~lqe~le 485 (543)
T COG1315 406 PEIVERLKELTEEISLHEERLKKLTKLLVALVKVKIESKKNILPPDKESLLTAVNNTKITLRNSIEKIKAELEGLQEELE 485 (543)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHh
Confidence 355555555555555555444444333221 1111122233355667777767777888899999998888754
Q ss_pred h
Q 038457 112 A 112 (308)
Q Consensus 112 ~ 112 (308)
.
T Consensus 486 ~ 486 (543)
T COG1315 486 V 486 (543)
T ss_pred h
Confidence 3
No 175
>PHA03046 Hypothetical protein; Provisional
Probab=23.81 E-value=3.9e+02 Score=21.54 Aligned_cols=43 Identities=14% Similarity=0.246 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHH
Q 038457 216 DAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVT 258 (308)
Q Consensus 216 ~eI~~ie~~I~EL~~lF~dla~LV~~Qge~iD~Ie~Nv~~a~~ 258 (308)
-+|+.+.-.+.-|-.+|+....-...-+..|+|+|.+.+....
T Consensus 84 ~~iKd~vlRL~vlEK~~~~~i~~c~~~~~~i~RLE~H~ETlRk 126 (142)
T PHA03046 84 MDIKDFVLRLLVLEKLFQLSIKRCKSLNNIIKRLENHTETVRK 126 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577777778888888998888888889999999999887443
No 176
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=23.65 E-value=8.1e+02 Score=25.14 Aligned_cols=43 Identities=9% Similarity=0.293 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhcCChhhHHHHHHHHHhhHHHHHH
Q 038457 52 VDKLSALLKKLKDANEESKSVTKASEMKAIKKRMEKDVDEVGK 94 (308)
Q Consensus 52 I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~~~~~i~~ 94 (308)
+..+...-.+|..+..+....+.+++...+..+++.+...+.+
T Consensus 397 ~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~ 439 (650)
T TIGR03185 397 LKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFR 439 (650)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHH
Confidence 3333444444455555544445545555555555544444333
No 177
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.62 E-value=5.9e+02 Score=23.52 Aligned_cols=57 Identities=7% Similarity=0.128 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHH
Q 038457 209 EEIQERHDAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNVQSGTTALQ 268 (308)
Q Consensus 209 ~~i~~R~~eI~~ie~~I~EL~~lF~dla~LV~~Qge~iD~Ie~Nv~~a~~~v~~g~~~L~ 268 (308)
..|+.+-.| |=.=..+|..|..+=..+|.-=...+|.++-||+.|..-.-+--..+.
T Consensus 230 q~IEstIsE---lG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ellKy~e~vS 286 (311)
T KOG0812|consen 230 QNIESTISE---LGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHSELLKYFERVS 286 (311)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHhc
Confidence 344444444 444455666666666667777777888888888888887765555554
No 178
>PF10496 Syntaxin-18_N: SNARE-complex protein Syntaxin-18 N-terminus ; InterPro: IPR019529 This is the conserved N-terminal of Syntaxin-18. Syntaxin-18 is found in the SNARE complex of the endoplasmic reticulum and functions in the trafficking between the ER intermediate compartment and the cis-Golgi vesicle. In particular, the N-terminal region is important for the formation of ER aggregates []. More specifically, syntaxin-18 is involved in endoplasmic reticulum-mediated phagocytosis, presumably by regulating the specific and direct fusion of the ER with the plasma or phagosomal membranes [].
Probab=23.49 E-value=1.7e+02 Score=21.32 Aligned_cols=34 Identities=21% Similarity=0.267 Sum_probs=29.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 038457 35 DMGMEGFNKQIQEIEKQVDKLSALLKKLKDANEE 68 (308)
Q Consensus 35 ~~~~~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~ 68 (308)
...-..|+.++.+|...|..|...|.+++.-+-.
T Consensus 35 ~~~~d~F~keA~~i~~~I~~L~~fL~~iR~~YL~ 68 (87)
T PF10496_consen 35 TKPKDEFLKEAYRILSHITSLRKFLKSIRKAYLS 68 (87)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3556799999999999999999999999877754
No 179
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=23.39 E-value=2.7e+02 Score=19.60 Aligned_cols=29 Identities=24% Similarity=0.489 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038457 212 QERHDAVKEIEKKLLDLQQIYMDMAVLVE 240 (308)
Q Consensus 212 ~~R~~eI~~ie~~I~EL~~lF~dla~LV~ 240 (308)
.+|...|..++..|.|..++..+|..-|.
T Consensus 21 ~~r~~~i~~~e~~l~ea~~~l~qMe~E~~ 49 (79)
T PF05008_consen 21 EQRKSLIREIERDLDEAEELLKQMELEVR 49 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999876665
No 180
>COG1459 PulF Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=23.35 E-value=4.1e+02 Score=25.62 Aligned_cols=40 Identities=10% Similarity=0.026 Sum_probs=25.6
Q ss_pred HHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 038457 235 MAVLVEAQGEILDNIESQVSNAVTNVQSGTTALQNAKKHQ 274 (308)
Q Consensus 235 la~LV~~Qge~iD~Ie~Nv~~a~~~v~~g~~~L~kA~~~q 274 (308)
++......+...+....+.-.+.+....=..-|.+..+|.
T Consensus 110 ls~al~~~~~~F~~~~~~~v~~gE~~G~L~~~l~~la~y~ 149 (397)
T COG1459 110 LSEALAQLPGVFPDLYVAMVAAGERSGNLDEVLQRLAKYL 149 (397)
T ss_pred HHHHHHhCcccCCHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 4445566777888888888888777654444444444444
No 181
>PRK14857 tatA twin arginine translocase protein A; Provisional
Probab=23.25 E-value=54 Score=24.63 Aligned_cols=6 Identities=33% Similarity=0.169 Sum_probs=2.6
Q ss_pred HHhccc
Q 038457 298 GVIKPW 303 (308)
Q Consensus 298 ~i~~~~ 303 (308)
.|++|.
T Consensus 20 lvfGP~ 25 (90)
T PRK14857 20 LVFGPK 25 (90)
T ss_pred HHcCch
Confidence 344443
No 182
>PF09371 Tex_N: Tex-like protein N-terminal domain; InterPro: IPR018974 This presumed domain is found at the N terminus of Q45388 from SWISSPROT. This protein defines a novel family of prokaryotic transcriptional accessory factors []. ; PDB: 2OCE_A 3BZK_A 3BZC_A.
Probab=22.75 E-value=5e+02 Score=22.34 Aligned_cols=71 Identities=27% Similarity=0.437 Sum_probs=41.1
Q ss_pred HHhcCCchHHHHHHHHHhhhhhH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHH
Q 038457 182 LIETGNSEQIFQKAIQEQGRGQV-LNTLEEIQERHDAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNV 260 (308)
Q Consensus 182 ~~~~~~~~~~~q~~l~~~~~~q~-~~~l~~i~~R~~eI~~ie~~I~EL~~lF~dla~LV~~Qge~iD~Ie~Nv~~a~~~v 260 (308)
+++.|++-.|....=.+. .+-+ ...+..+.+|+..+.+|++.-.++-. .+.+||-+-+.+...+..|.+-.
T Consensus 18 Ll~eG~TvPFIARYRKe~-TG~Lde~~lR~i~~~~~~~~~L~~Rk~~il~-------~i~eqgkLt~eL~~~I~~a~tl~ 89 (193)
T PF09371_consen 18 LLDEGNTVPFIARYRKEM-TGGLDEVQLREIQDRYEYLRELEKRKESILK-------SIEEQGKLTPELKQAIENATTLQ 89 (193)
T ss_dssp HHHTT--HHHHHHH-HHH-HTS--HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHTT---HHHHHHHHH--SHH
T ss_pred HHhCCCCcchhhhhhhhh-hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHcccCCHHHHHHHHhcCCHH
Confidence 567777666665431111 1111 24577788888888888887776654 46679999888888888876543
No 183
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=22.56 E-value=81 Score=28.38 Aligned_cols=25 Identities=16% Similarity=0.228 Sum_probs=9.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhcc
Q 038457 278 RKWMCIAIIILLIIVAVIVVGVIKP 302 (308)
Q Consensus 278 rk~~c~~i~iviii~~iii~~i~~~ 302 (308)
||+.++++++.++++++.+...+..
T Consensus 195 RkR~i~f~llgllfliiaigltvGT 219 (256)
T PF09788_consen 195 RKRAIIFFLLGLLFLIIAIGLTVGT 219 (256)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4444333333333333333333333
No 184
>PTZ00370 STEVOR; Provisional
Probab=22.54 E-value=63 Score=29.64 Aligned_cols=29 Identities=17% Similarity=0.202 Sum_probs=10.8
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 038457 80 AIKKRMEKDVDEVGKIARNVKAKIEAINR 108 (308)
Q Consensus 80 ~l~~~i~~~~~~i~~~~~~ik~~l~~l~~ 108 (308)
++++-++.+-.+.-+...++.+..+++++
T Consensus 58 emK~i~d~~n~eaikkyqqT~~~f~e~~e 86 (296)
T PTZ00370 58 ELKEIIDKMNEEAIKKYQQTHDPYEQLKE 86 (296)
T ss_pred HHHHHHHHHhHHHhhhhhhhcchHHHHHH
Confidence 33333333333333333333333444333
No 185
>COG2443 Sss1 Preprotein translocase subunit Sss1 [Intracellular trafficking and secretion]
Probab=22.53 E-value=2.8e+02 Score=19.48 Aligned_cols=25 Identities=12% Similarity=0.070 Sum_probs=16.8
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHH
Q 038457 249 IESQVSNAVTNVQSGTTALQNAKKH 273 (308)
Q Consensus 249 Ie~Nv~~a~~~v~~g~~~L~kA~~~ 273 (308)
++.-.+...++.++...-|+.|++-
T Consensus 4 ~~~~~e~~~~~lke~~rvl~~arKP 28 (65)
T COG2443 4 MMDKPEELREFLKEYRRVLKVARKP 28 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4555666777777777777776543
No 186
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.28 E-value=2.2e+02 Score=24.71 Aligned_cols=10 Identities=40% Similarity=0.856 Sum_probs=5.6
Q ss_pred hhHHHHHHHh
Q 038457 242 QGEILDNIES 251 (308)
Q Consensus 242 Qge~iD~Ie~ 251 (308)
-|-|+++||.
T Consensus 138 k~vM~eNIek 147 (217)
T KOG0859|consen 138 KGVMMENIEK 147 (217)
T ss_pred HHHHHHHHHH
Confidence 4556665553
No 187
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=22.27 E-value=3.1e+02 Score=19.87 Aligned_cols=60 Identities=8% Similarity=0.203 Sum_probs=35.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCChhhHHHHHHHHHhhHHHHHH
Q 038457 35 DMGMEGFNKQIQEIEKQVDKLSALLKKLKDANEESKSVTKASEMKAIKKRMEKDVDEVGK 94 (308)
Q Consensus 35 ~~~~~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~~~~~i~~ 94 (308)
.++-...-..+..++.++..++-...+|....+..-...+....+.+...|+.+...+..
T Consensus 9 ~~p~~~Ls~vl~~LqDE~~hm~~e~~~L~~~~~~~d~s~~~~~R~~L~~~l~~lv~~mE~ 68 (79)
T PF06657_consen 9 QSPGEALSEVLKALQDEFGHMKMEHQELQDEYKQMDPSLGRRKRRDLEQELEELVKRMEA 68 (79)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHHHH
Confidence 344556667778888888888888888877676654443333333444444444443333
No 188
>PF03935 SKN1: Beta-glucan synthesis-associated protein (SKN1); InterPro: IPR005629 This family consists of the beta-glucan synthesis-associated proteins KRE6 and SKN1. Beta1,6-Glucan is a key component of the yeast cell wall, interconnecting cell wall proteins, beta1,3-glucan, and chitin. It has been postulated that the synthesis of beta1,6-glucan begins in the endoplasmic reticulum with the formation of protein-bound primer structures and that these primer structures are extended in the Golgi complex by two putative glucosyltransferases that are functionally redundant, Kre6 and Skn1. This is followed by maturation steps at the cell surface and by coupling to other cell wall macromolecules [].
Probab=22.13 E-value=74 Score=31.62 Aligned_cols=24 Identities=13% Similarity=0.209 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccc
Q 038457 280 WMCIAIIILLIIVAVIVVGVIKPW 303 (308)
Q Consensus 280 ~~c~~i~iviii~~iii~~i~~~~ 303 (308)
..|++++++.+++|||+.||+-.+
T Consensus 45 lg~LilL~lGLL~LFigyPIlt~~ 68 (504)
T PF03935_consen 45 LGGLILLILGLLMLFIGYPILTFF 68 (504)
T ss_pred HHHHHHHHHHHHHHHHHhhheeEE
Confidence 367777788888888888887654
No 189
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=22.08 E-value=4.8e+02 Score=22.69 Aligned_cols=62 Identities=21% Similarity=0.352 Sum_probs=28.9
Q ss_pred chHHHHHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 038457 188 SEQIFQKAIQEQGRGQVLNTLEEIQERHDAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIE 250 (308)
Q Consensus 188 ~~~~~q~~l~~~~~~q~~~~l~~i~~R~~eI~~ie~~I~EL~~lF~dla~LV~~Qge~iD~Ie 250 (308)
+..++.. +.+.++..+..+|.+-+.=|.+|..++..|..|.+--.+|..|+..=..|.+-|+
T Consensus 105 se~YWk~-lAE~RR~AL~eaL~ENe~Lh~~ie~~~eEi~~lk~en~~L~elae~~~~la~~ie 166 (200)
T PF07412_consen 105 SENYWKE-LAEERRKALEEALEENEKLHKEIEQKDEEIAKLKEENEELKELAEHVQYLAEVIE 166 (200)
T ss_dssp CHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445443 4444554445556555555555555555555444444444444333333333333
No 190
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=22.08 E-value=7.5e+02 Score=24.16 Aligned_cols=60 Identities=17% Similarity=0.295 Sum_probs=38.5
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038457 81 IKKRMEKDVDEVGKIARNVKAKIEAINRENLANRQKPGCEKGTSVDRSRMNVTNALTKRFKELMTEFQTLR 151 (308)
Q Consensus 81 l~~~i~~~~~~i~~~~~~ik~~l~~l~~~~~~~~~~~~~~~~~~~~r~r~~~~~~L~~~f~~~~~~f~~~q 151 (308)
=+.+|+...+.+-..+-.++..++.|.+.... .|..| ...+..++.+++..+..+.+.++
T Consensus 211 ~k~kL~~~Sd~lltkVDDLQD~vE~LRkDV~~----RgVRp-------~~~qLe~v~kdi~~a~keL~~m~ 270 (426)
T smart00806 211 SKKKLSEDSDSLLTKVDDLQDIIEALRKDVAQ----RGVRP-------SKKQLETVQKELETARKELKKME 270 (426)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCCCC-------CHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666677777777777776542 12222 34566777788888888777764
No 191
>PF13131 DUF3951: Protein of unknown function (DUF3951)
Probab=22.06 E-value=1.4e+02 Score=19.91 Aligned_cols=16 Identities=25% Similarity=0.501 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 038457 282 CIAIIILLIIVAVIVV 297 (308)
Q Consensus 282 c~~i~iviii~~iii~ 297 (308)
.++++.+.+++++++.
T Consensus 5 tiG~~~~~~~I~~lIg 20 (53)
T PF13131_consen 5 TIGIILFTIFIFFLIG 20 (53)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 192
>PF04888 SseC: Secretion system effector C (SseC) like family ; InterPro: IPR006972 SseC is a secreted protein that forms a complex together with SecB and SecD on the surface of Salmonella typhimurium. All these proteins are secreted by the type III secretion system []. Many mucosal pathogens use type III secretion systems for the injection of effector proteins into target cells. SecB, SseC and SecD are inserted into the target cell membrane. where they form a small pore or translocon [, ]. In addition to SseC, this family includes the bacterial secreted proteins PopB, PepB, YopB and EspD which are thought to be directly involved in pore formation, and type III secretion system translocon.; GO: 0009405 pathogenesis
Probab=22.06 E-value=2.6e+02 Score=25.54 Aligned_cols=41 Identities=15% Similarity=0.108 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc--cchHHHHHHHHHHHHHH
Q 038457 254 SNAVTNVQSGTTALQNAKKHQKSS--RKWMCIAIIILLIIVAV 294 (308)
Q Consensus 254 ~~a~~~v~~g~~~L~kA~~~qkk~--rk~~c~~i~iviii~~i 294 (308)
....++-++-.+..++|.+-+|.. .|.+-|++.++.+|..+
T Consensus 33 ~~~~e~~~~~~e~~~kaeeaqK~Gi~~kIf~wi~~avsvv~~~ 75 (306)
T PF04888_consen 33 KKAEEKAEEIEEAQEKAEEAQKAGIFSKIFGWIGTAVSVVAGA 75 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 444455555555556666655552 24344444444444444
No 193
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=21.95 E-value=4.6e+02 Score=21.64 Aligned_cols=68 Identities=16% Similarity=0.301 Sum_probs=40.4
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCChhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 038457 34 SDMGMEGFNKQIQEIEKQVDKLSALLKKLKDANEESKSVTKASEMKAIKKRMEKDVDEVGKIARNVKAKIEAINR 108 (308)
Q Consensus 34 ~~~~~~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~ik~~l~~l~~ 108 (308)
++..+..+-..+.+++..+..+...+..|..-.....+.++.. ++...+..+..+ ...+..+|..+..
T Consensus 70 s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~---el~~~i~~l~~e----~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 70 SPEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNE---ELREEIEELEEE----IEELEEKLEKLRS 137 (169)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH---HHHHHHHHHHHH----HHHHHHHHHHHHh
Confidence 3445777777888888888888888888766555544444332 344444444333 3444445555443
No 194
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=21.87 E-value=1.8e+02 Score=21.24 Aligned_cols=29 Identities=14% Similarity=0.407 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038457 211 IQERHDAVKEIEKKLLDLQQIYMDMAVLV 239 (308)
Q Consensus 211 i~~R~~eI~~ie~~I~EL~~lF~dla~LV 239 (308)
++++..+|..++..+.-..++..++..+|
T Consensus 54 ~eeq~~~i~~Le~~i~~k~~~L~~~~~~~ 82 (83)
T PF07544_consen 54 VEEQEEEIEELEEQIRKKREVLQKFKERV 82 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45566778888888888888887776655
No 195
>COG1314 SecG Preprotein translocase subunit SecG [Intracellular trafficking and secretion]
Probab=21.57 E-value=1.1e+02 Score=22.67 Aligned_cols=14 Identities=7% Similarity=0.394 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHhcc
Q 038457 289 LIIVAVIVVGVIKP 302 (308)
Q Consensus 289 iii~~iii~~i~~~ 302 (308)
+++.+++++.|+.+
T Consensus 10 i~~a~~LI~~VLlQ 23 (86)
T COG1314 10 IVVALALIILVLLQ 23 (86)
T ss_pred HHHHHHHHHheeee
Confidence 33334444444443
No 196
>PHA02849 putative transmembrane protein; Provisional
Probab=21.54 E-value=1.1e+02 Score=22.25 Aligned_cols=24 Identities=17% Similarity=0.376 Sum_probs=10.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccc
Q 038457 280 WMCIAIIILLIIVAVIVVGVIKPW 303 (308)
Q Consensus 280 ~~c~~i~iviii~~iii~~i~~~~ 303 (308)
.+.+.++++.|++++.++.-+..|
T Consensus 17 v~vi~v~v~vI~i~~flLlyLvkw 40 (82)
T PHA02849 17 VTVILVFVLVISFLAFMLLYLIKW 40 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444333333
No 197
>PF09712 PHA_synth_III_E: Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E)
Probab=21.53 E-value=4.2e+02 Score=24.36 Aligned_cols=18 Identities=6% Similarity=-0.125 Sum_probs=8.6
Q ss_pred chHHHHHHHHHHHHHHHH
Q 038457 36 MGMEGFNKQIQEIEKQVD 53 (308)
Q Consensus 36 ~~~~~f~~~v~~I~~~I~ 53 (308)
.+...|.+.+++.=..+.
T Consensus 215 e~~d~Wi~~ae~~~~~~~ 232 (293)
T PF09712_consen 215 EFYDIWIDAAEEAYEELF 232 (293)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344445555555444433
No 198
>PRK09458 pspB phage shock protein B; Provisional
Probab=21.49 E-value=99 Score=22.40 Aligned_cols=16 Identities=25% Similarity=0.351 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 038457 284 AIIILLIIVAVIVVGV 299 (308)
Q Consensus 284 ~i~iviii~~iii~~i 299 (308)
++++-+||++++|.|+
T Consensus 5 fl~~PliiF~ifVaPi 20 (75)
T PRK09458 5 FLAIPLTIFVLFVAPI 20 (75)
T ss_pred HHHHhHHHHHHHHHHH
Confidence 3445555666666655
No 199
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=21.39 E-value=3.1e+02 Score=24.00 Aligned_cols=40 Identities=18% Similarity=0.290 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhH---HHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 038457 232 YMDMAVLVEAQGE---ILDNIESQVSNAVTNVQSGTTALQNAK 271 (308)
Q Consensus 232 F~dla~LV~~Qge---~iD~Ie~Nv~~a~~~v~~g~~~L~kA~ 271 (308)
|+.|-.|+.+|++ .++..|.+|+.-...+++-.++|+.|.
T Consensus 59 f~~llkla~eq~k~e~~m~~Lea~VEkrD~~IQqLqk~LK~aE 101 (272)
T KOG4552|consen 59 FKTLLKLAPEQQKREQLMRTLEAHVEKRDEVIQQLQKNLKSAE 101 (272)
T ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
No 200
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=21.13 E-value=3.9e+02 Score=20.56 Aligned_cols=41 Identities=17% Similarity=0.216 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHH
Q 038457 217 AVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAV 257 (308)
Q Consensus 217 eI~~ie~~I~EL~~lF~dla~LV~~Qge~iD~Ie~Nv~~a~ 257 (308)
.|..+.+.+.-..+-...+..-+..||+.|+.|..-.....
T Consensus 54 qI~kL~e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~in 94 (102)
T PF01519_consen 54 QINKLTEKVDKQGEQIKELQVEQKAQGKTLQLILKTLQSIN 94 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555555556688888888876655443
No 201
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=21.08 E-value=1.7e+02 Score=18.88 Aligned_cols=14 Identities=14% Similarity=0.589 Sum_probs=6.0
Q ss_pred hHHHHHHHHHHHHH
Q 038457 280 WMCIAIIILLIIVA 293 (308)
Q Consensus 280 ~~c~~i~iviii~~ 293 (308)
|+.+++.+|+|+.+
T Consensus 4 wlt~iFsvvIil~I 17 (49)
T PF11044_consen 4 WLTTIFSVVIILGI 17 (49)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444443333
No 202
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=21.02 E-value=1.6e+02 Score=22.47 Aligned_cols=31 Identities=26% Similarity=0.392 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Q 038457 262 SGTTALQNAKKHQKSSRKWMCIAIIILLIIVA 293 (308)
Q Consensus 262 ~g~~~L~kA~~~qkk~rk~~c~~i~iviii~~ 293 (308)
.|..-|..+..|..+ .+|.=++|+++.+|++
T Consensus 32 ~G~~YL~~~y~y~~s-h~WRN~GIli~f~i~f 62 (103)
T PF06422_consen 32 SGDDYLEESYGYSYS-HRWRNFGILIAFWIFF 62 (103)
T ss_pred eHHHHHhhhcccccc-chhhhHHHHHHHHHHH
Confidence 466677777777554 4454444444433333
No 203
>PRK14710 hypothetical protein; Provisional
Probab=20.96 E-value=1.2e+02 Score=21.62 Aligned_cols=14 Identities=43% Similarity=0.541 Sum_probs=6.1
Q ss_pred hHHHHHHHHHHHHH
Q 038457 280 WMCIAIIILLIIVA 293 (308)
Q Consensus 280 ~~c~~i~iviii~~ 293 (308)
+|.+.|+.++|+++
T Consensus 10 km~ififaiii~v~ 23 (86)
T PRK14710 10 KMIIFIFAIIIIVV 23 (86)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444333
No 204
>PHA02657 hypothetical protein; Provisional
Probab=20.82 E-value=1.1e+02 Score=22.62 Aligned_cols=24 Identities=13% Similarity=0.477 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccc
Q 038457 280 WMCIAIIILLIIVAVIVVGVIKPW 303 (308)
Q Consensus 280 ~~c~~i~iviii~~iii~~i~~~~ 303 (308)
.+.+.++++.|.+++.++.-+..|
T Consensus 27 imVitvfv~vI~il~flLLYLvkW 50 (95)
T PHA02657 27 ILVFTIFIFVVCILIYLLIYLVDW 50 (95)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555554444444
No 205
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=20.78 E-value=1.1e+02 Score=22.12 Aligned_cols=15 Identities=20% Similarity=0.538 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHH
Q 038457 285 IIILLIIVAVIVVGV 299 (308)
Q Consensus 285 i~iviii~~iii~~i 299 (308)
+++.++|++++|.|+
T Consensus 6 l~~plivf~ifVap~ 20 (75)
T PF06667_consen 6 LFVPLIVFMIFVAPI 20 (75)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444443
No 206
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=20.73 E-value=4.9e+02 Score=21.56 Aligned_cols=59 Identities=10% Similarity=0.133 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-HHHHHhhHHHHHHHHHHHHHHHHH
Q 038457 211 IQERHDAVKEIEKKLLDLQQIYMDMAVLVEAQGEI-LDNIESQVSNAVTNVQSGTTALQN 269 (308)
Q Consensus 211 i~~R~~eI~~ie~~I~EL~~lF~dla~LV~~Qge~-iD~Ie~Nv~~a~~~v~~g~~~L~k 269 (308)
++.=.+.|+.|......|.+=|.-+...-.++-+. ++.++.+|..-..-++.+.+.+.-
T Consensus 81 lerLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~~~veel~eqV~el~~i~emv~~d~~~ 140 (157)
T COG3352 81 LERLEENIKDLVSLYELVSRDFNPFMSKTPQESRGIVEELEEQVNELKMIVEMVIKDLRE 140 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 33333444444455555555566666667777776 899999998888777777666543
No 207
>PF12022 DUF3510: Domain of unknown function (DUF3510); InterPro: IPR024603 The COG complex comprises eight proteins (COG1-8) and plays critical roles in Golgi structure and function []. This uncharacterised domain is found in the C-terminal of COG complex subunit 2 proteins.
Probab=20.50 E-value=3.5e+02 Score=21.35 Aligned_cols=32 Identities=25% Similarity=0.286 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 038457 37 GMEGFNKQIQEIEKQVDKLSALLKKLKDANEE 68 (308)
Q Consensus 37 ~~~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~ 68 (308)
....|+..+.++-..+.+..+.+.+|++..+.
T Consensus 71 v~~~y~~~~~evL~sv~KtEeSL~rlkk~~~~ 102 (125)
T PF12022_consen 71 VTERYYEIASEVLTSVRKTEESLKRLKKRRKR 102 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 44577778888888888888888888877553
No 208
>PF00429 TLV_coat: ENV polyprotein (coat polyprotein); InterPro: IPR018154 Enveloped viruses such as Human immunodeficiency virus 1, influenza virus, and Ebola virus sp. express a surface glycoprotein that mediates both cell attachment and fusion of viral and cellular membranes. The ENV polyprotein (coat polyprotein) usually contains two coat proteins which differ depending on the source. The structure of a number of the ENV polyprotein domains have been determined: The crystal structure of an extraviral segment of the Moloney murine leukemia virus (MoMuLV) transmembrane (TM) subunit has been determined to 1.7-A resolution. This segment contains a trimeric coiled coil, with a hydrophobic cluster at its base and a strand that packs in an antiparallel orientation against the coiled coil. This structure serves as a model for a wide range of viral fusion proteins; key residues in this structure are conserved among C- and D-type retroviruses and the filovirus ebola []. An essential step in retrovirus infection is the binding of the virus to its receptor on a target cell. The structure of the receptor-binding domain of the envelope glycoprotein from Friend murine leukemia virus (F-MuLV) has been determined determined to 2.0-A resolution. The core of the domain is an antiparallel beta sandwich, with two interstrand loops forming a helical subdomain atop the sandwich. The residues in the helical region, but not in the beta sandwich, are highly variable among mammalian C-type retroviruses with distinct tropisms, indicating that the helical subdomain determines the receptor specificity of the virus []. ; PDB: 1LCS_B 1MOF_A 1XNL_A 2XZ3_A 1AOL_A 1Y4M_C.
Probab=20.38 E-value=2.6e+02 Score=28.35 Aligned_cols=35 Identities=20% Similarity=0.514 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhHH
Q 038457 211 IQERHDAVKEIEKKLLDLQQIYMD----MAVLVEAQGEI 245 (308)
Q Consensus 211 i~~R~~eI~~ie~~I~EL~~lF~d----la~LV~~Qge~ 245 (308)
+++=.+.|..++.++.-|+++..+ |..|..+||-+
T Consensus 437 ~~~~~~~i~~l~~~~~sl~~~v~qnr~~lD~l~a~~Gg~ 475 (561)
T PF00429_consen 437 LQALEDSISALQEQLTSLAEVVLQNRRALDLLTAEQGGL 475 (561)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhhhcCCc
Confidence 333345566666666665554321 33344556544
Done!