Query 038457
Match_columns 308
No_of_seqs 163 out of 1359
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 19:33:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038457.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038457hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dn1_B Syntaxin 1A, syntaxin b 100.0 7.8E-47 2.7E-51 341.0 13.9 267 1-283 1-267 (267)
2 2xhe_B Syntaxin1; exocytosis, 100.0 4.8E-41 1.6E-45 305.6 12.5 242 31-278 36-279 (279)
3 1fio_A SSO1 protein; four heli 100.0 1.9E-32 6.6E-37 236.4 19.9 193 37-243 3-196 (196)
4 3hd7_B Syntaxin-1A; membrane p 100.0 1.3E-29 4.5E-34 197.7 14.3 95 203-297 8-102 (109)
5 1jth_B Syntaxin 1A; coiled-coi 99.9 2.3E-26 7.8E-31 168.4 10.2 76 208-283 2-77 (77)
6 3c98_B Syntaxin-1A; protein co 99.9 3.1E-25 1.1E-29 199.8 15.0 245 31-283 35-279 (279)
7 2nps_B Syntaxin 13, vesicle-as 99.9 2.5E-24 8.4E-29 155.0 10.1 70 212-281 2-71 (71)
8 1sfc_B Protein (syntaxin 1A), 99.9 1.1E-23 3.7E-28 156.3 9.7 76 203-278 8-83 (83)
9 3b5n_B Protein SSO1; snare com 99.9 6.2E-23 2.1E-27 146.8 10.9 68 208-275 2-69 (69)
10 1s94_A S-syntaxin; three helix 99.9 3E-23 1E-27 176.5 9.4 173 1-186 7-180 (180)
11 1n7s_B Syntaxin 1A; neuronal s 99.9 1.4E-21 4.8E-26 139.4 9.1 66 206-271 2-67 (68)
12 1gl2_B Syntaxin 7; membrane pr 99.8 4E-21 1.4E-25 135.7 8.3 63 210-272 3-65 (65)
13 1ez3_A Syntaxin-1A; three heli 99.8 5.5E-18 1.9E-22 135.8 14.4 123 34-161 3-125 (127)
14 2dnx_A Syntaxin-12; snare, HAB 99.0 1E-08 3.6E-13 81.8 15.1 115 37-162 8-122 (130)
15 3hd7_B Syntaxin-1A; membrane p 97.5 0.0035 1.2E-07 48.0 13.8 88 208-299 20-107 (109)
16 3hd7_A Vesicle-associated memb 97.5 0.0023 8E-08 47.3 12.3 43 216-258 5-47 (91)
17 1hs7_A Syntaxin VAM3; UP-and-D 97.3 0.0024 8.3E-08 47.6 10.3 86 46-159 6-92 (97)
18 1n7s_D SNAP-25A; neuronal snar 96.8 0.014 4.7E-07 40.3 9.7 55 215-269 9-63 (66)
19 2nps_D Syntaxin-6; vesicle fus 96.7 0.0072 2.5E-07 43.7 8.0 61 213-273 16-76 (82)
20 1gl2_D Syntaxin 8, vesicle tra 96.6 0.01 3.4E-07 40.9 7.5 56 214-269 7-62 (65)
21 1sfc_D Protein (SNAP-25B), pro 96.5 0.024 8.3E-07 41.4 9.7 55 215-269 28-82 (87)
22 2kog_A Vesicle-associated memb 96.0 0.0015 5.1E-08 50.8 0.7 40 216-255 33-72 (119)
23 1l4a_D S-SNAP25 fusion protein 95.9 0.032 1.1E-06 40.7 7.6 55 215-269 29-83 (87)
24 3b5n_D Protein transport prote 95.8 0.093 3.2E-06 35.9 9.2 54 216-269 10-63 (64)
25 1nhl_A Synaptosomal-associated 95.4 0.13 4.3E-06 33.9 8.3 40 229-268 13-52 (54)
26 1n7s_C SNAP-25A; neuronal snar 94.0 1 3.5E-05 32.0 10.9 51 219-269 26-76 (79)
27 3b5n_C Protein transport prote 93.9 0.6 2.1E-05 32.4 9.0 36 238-273 34-69 (70)
28 1l4a_C S-SNAP25 fusion protein 89.4 0.71 2.4E-05 33.2 5.4 31 237-267 48-78 (83)
29 4dnd_A Syntaxin-10, SYN10; str 83.5 11 0.00037 29.2 9.8 96 40-143 28-124 (130)
30 2nps_B Syntaxin 13, vesicle-as 77.0 15 0.00051 25.1 8.5 63 210-272 7-69 (71)
31 2kog_A Vesicle-associated memb 73.7 3.5 0.00012 31.6 4.1 17 279-295 97-113 (119)
32 1gl2_C VTI1B, vesicle transpor 73.4 18 0.00062 24.3 8.8 44 225-268 18-61 (65)
33 3ghg_A Fibrinogen alpha chain; 72.6 68 0.0023 30.6 13.8 24 131-154 131-154 (562)
34 1deq_A Fibrinogen (alpha chain 71.5 59 0.002 29.7 12.1 24 46-69 63-86 (390)
35 1n7s_B Syntaxin 1A; neuronal s 69.6 23 0.00078 23.9 9.8 50 214-263 17-66 (68)
36 1sfc_A VAMP 2, protein (synapt 67.8 33 0.0011 25.0 8.9 41 216-256 30-70 (96)
37 1jth_B Syntaxin 1A; coiled-coi 65.4 31 0.001 23.8 9.5 64 209-272 10-73 (77)
38 3b5n_B Protein SSO1; snare com 64.4 30 0.001 23.3 9.5 55 211-265 12-66 (69)
39 3n27_A Fusion glycoprotein F0, 64.2 27 0.00093 24.4 6.5 61 211-273 15-75 (80)
40 3hd7_A Vesicle-associated memb 63.7 38 0.0013 24.3 12.3 21 206-226 23-43 (91)
41 1gl2_B Syntaxin 7; membrane pr 61.7 33 0.0011 22.9 8.5 54 211-264 11-64 (65)
42 2nps_A VAMP-4, vesicle-associa 58.1 38 0.0013 23.2 6.7 38 218-255 10-47 (74)
43 1uii_A Geminin; human, DNA rep 49.3 67 0.0023 22.7 8.5 51 190-241 28-78 (83)
44 1sfc_B Protein (syntaxin 1A), 47.5 69 0.0024 22.3 9.5 60 209-268 21-80 (83)
45 2lk9_A Bone marrow stromal ant 46.7 21 0.00072 20.7 3.0 10 283-292 9-18 (35)
46 3c98_B Syntaxin-1A; protein co 46.5 11 0.00039 32.1 2.9 216 37-273 48-276 (279)
47 3t98_B Nucleoporin NUP58/NUP45 46.1 81 0.0028 22.7 10.7 73 36-108 5-79 (93)
48 3ghg_A Fibrinogen alpha chain; 45.1 2.1E+02 0.0073 27.3 13.0 28 81-108 51-78 (562)
49 2wvr_A Geminin; DNA replicatio 44.5 1.3E+02 0.0046 24.8 9.1 62 189-251 96-157 (209)
50 3b5n_A Synaptobrevin homolog 1 44.1 65 0.0022 21.1 8.3 39 217-255 3-41 (61)
51 1l4a_A Synaptobrevin; snare, s 43.7 67 0.0023 22.3 6.1 39 217-255 16-54 (80)
52 2ww9_B Protein transport prote 43.1 12 0.00042 26.4 2.0 29 244-272 13-41 (80)
53 1gl2_A Endobrevin; membrane pr 42.4 73 0.0025 21.1 7.8 40 216-255 9-48 (65)
54 1m1j_A Fibrinogen alpha subuni 41.5 2.3E+02 0.0078 26.6 13.6 30 40-69 55-84 (491)
55 3efg_A Protein SLYX homolog; x 40.8 89 0.003 21.7 6.3 46 217-262 15-60 (78)
56 3uun_A Dystrophin; triple heli 38.2 1.1E+02 0.0037 21.9 11.1 70 37-106 37-108 (119)
57 2c5k_T Syntaxin TLG1, T-snare 38.1 1.1E+02 0.0038 22.0 9.1 84 41-147 8-91 (95)
58 1n7s_A Vesicle-associated memb 36.7 88 0.003 20.5 9.5 40 216-255 4-43 (63)
59 2bez_C E2 glycoprotein; coiled 36.6 1E+02 0.0036 21.3 9.8 64 38-106 11-74 (77)
60 1urq_A M-tomosyn isoform; tran 35.5 97 0.0033 20.6 7.3 38 218-255 6-43 (63)
61 2lf0_A Uncharacterized protein 35.4 1.2E+02 0.0043 22.8 6.6 47 48-94 8-54 (123)
62 3uul_A Utrophin; spectrin repe 33.2 1.3E+02 0.0045 21.4 11.3 72 36-107 36-109 (118)
63 2l9u_A Receptor tyrosine-prote 31.5 33 0.0011 20.0 2.2 24 281-304 8-31 (40)
64 3s4r_A Vimentin; alpha-helix, 30.7 1.5E+02 0.0051 21.2 9.6 29 36-64 16-44 (93)
65 2nps_C Vesicle transport throu 29.7 1.4E+02 0.0048 20.7 11.2 53 218-270 21-73 (81)
66 2ke4_A CDC42-interacting prote 27.7 1.6E+02 0.0055 21.3 6.1 52 39-93 18-72 (98)
67 1wlq_A Geminin; coiled-coil; 2 27.6 1.6E+02 0.0055 20.7 8.5 45 197-241 26-70 (83)
68 2l16_A SEC-independent protein 27.1 32 0.0011 24.1 2.0 7 297-303 18-24 (78)
69 3swy_A Cyclic nucleotide-gated 27.1 1.2E+02 0.004 18.9 4.8 26 130-155 11-36 (46)
70 3gwk_C SAG1039, putative uncha 25.0 1.7E+02 0.006 20.2 12.7 36 73-108 8-43 (98)
71 2l5g_B Putative uncharacterize 25.0 1.2E+02 0.0042 18.4 4.4 28 40-67 6-33 (42)
72 2xhe_B Syntaxin1; exocytosis, 23.1 3.1E+02 0.011 23.4 8.3 62 217-278 211-272 (279)
73 2beq_A E2 glycoprotein; viral 22.4 1.3E+02 0.0045 17.9 4.4 30 220-249 3-32 (38)
74 4ioe_A Secreted protein ESXB; 22.2 1.9E+02 0.0066 19.7 8.8 28 84-111 13-40 (93)
75 3zbh_A ESXA; unknown function, 21.6 2E+02 0.0069 19.7 11.4 35 73-107 9-43 (99)
76 1deq_A Fibrinogen (alpha chain 21.3 4.7E+02 0.016 23.8 14.2 28 81-108 54-81 (390)
77 3swf_A CGMP-gated cation chann 21.1 2.1E+02 0.0072 19.7 5.3 26 130-155 13-38 (74)
78 2pnv_A Small conductance calci 20.5 1.6E+02 0.0054 18.0 4.9 28 206-233 9-40 (43)
No 1
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=100.00 E-value=7.8e-47 Score=340.98 Aligned_cols=267 Identities=24% Similarity=0.427 Sum_probs=194.1
Q ss_pred CcchhhhhhccccCCCCCCCcCcccCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCChhhHHH
Q 038457 1 MNDLLTDSFVSDARGQPSRDNDIEMGTRVPRSSSDMGMEGFNKQIQEIEKQVDKLSALLKKLKDANEESKSVTKASEMKA 80 (308)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~ 80 (308)
|.|+|.+.. ++.. .+...|++. .++++++|+.||+.|++|+..|..|..++.+|+.+|+..++.+++. +.
T Consensus 1 m~drl~~~~-~~~~--~~~~~~~~~-----~~~~~~~m~~F~~~v~~I~~~I~~I~~~v~~l~~l~~~~l~~~~~~--~~ 70 (267)
T 1dn1_B 1 MKDRTQELR-TAKD--SDDDDDVTV-----TVDRDRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPD--EK 70 (267)
T ss_dssp ----------------------------------CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCC--SH
T ss_pred CCchHHHHh-cccC--CCCccceec-----ccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcc--HH
Confidence 889999876 3322 112333333 3566789999999999999999999999999999999887765543 36
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038457 81 IKKRMEKDVDEVGKIARNVKAKIEAINRENLANRQKPGCEKGTSVDRSRMNVTNALTKRFKELMTEFQTLRQRIQEEYRE 160 (308)
Q Consensus 81 l~~~i~~~~~~i~~~~~~ik~~l~~l~~~~~~~~~~~~~~~~~~~~r~r~~~~~~L~~~f~~~~~~f~~~q~~~~~~~k~ 160 (308)
++.+|+.++.+|+++++.|+..|+.|+..+... +++++++++.|+|++|+.+|+++|+++|.+|+.+|..|++.++.
T Consensus 71 ~~~~l~~l~~~i~~~~~~i~~~Lk~l~~~~~~~---~~~~~~~~e~Rirk~q~~~L~~~f~~~m~~yq~~Q~~y~e~~k~ 147 (267)
T 1dn1_B 71 TKEELEELMSDIKKTANKVRSKLKSIEQSIEQE---EGLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKG 147 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999875421 12233467789999999999999999999999999999999999
Q ss_pred HHHHHhhhccCCCCChHHHHHHHhcCCchHHHHHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038457 161 VVERRVITVTGTRPDEETIDHLIETGNSEQIFQKAIQEQGRGQVLNTLEEIQERHDAVKEIEKKLLDLQQIYMDMAVLVE 240 (308)
Q Consensus 161 ~~~r~~~~v~~~~~~~e~i~~~~~~~~~~~~~q~~l~~~~~~q~~~~l~~i~~R~~eI~~ie~~I~EL~~lF~dla~LV~ 240 (308)
++.|+| .+.||++++++++.++++|++..|.+..+.. .++++.++.++++||++|.+||++|.|||+||.|||.||+
T Consensus 148 ~i~Rq~-~i~~~~~tdeeie~~ie~g~~~~f~q~~l~~--~~~~~~~l~~i~~R~~~i~~ie~~i~el~~if~dla~lV~ 224 (267)
T 1dn1_B 148 RIQRQL-EITGRTTTSEELEDMLESGNPAIFASGIIMD--SSISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVE 224 (267)
T ss_dssp HHHHHH-HHTTCCCCHHHHHHHHHTCSSCTTTTTCCCC--SHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHhHh-hccCCCCCHHHHHHHHhCCcHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998864 5678999999999999998875443322221 2345678999999999999999999999999999999999
Q ss_pred HhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHH
Q 038457 241 AQGEILDNIESQVSNAVTNVQSGTTALQNAKKHQKSSRKWMCI 283 (308)
Q Consensus 241 ~Qge~iD~Ie~Nv~~a~~~v~~g~~~L~kA~~~qkk~rk~~c~ 283 (308)
+||++||+||+||+.|.+||+.|..+|.+|.+||+++|||+||
T Consensus 225 ~Qg~~id~Ie~nv~~a~~~v~~~~~~l~kA~~~q~~~rkk~~~ 267 (267)
T 1dn1_B 225 SQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIM 267 (267)
T ss_dssp HHCSGGGCHHHHHHTCCCCCCCCC-------------------
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccC
Confidence 9999999999999999999999999999999999999999986
No 2
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=100.00 E-value=4.8e-41 Score=305.55 Aligned_cols=242 Identities=22% Similarity=0.426 Sum_probs=179.9
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCChhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Q 038457 31 RSSSDMGMEGFNKQIQEIEKQVDKLSALLKKLKDANEESKSVTKASEMKAIKKRMEKDVDEVGKIARNVKAKIEAINREN 110 (308)
Q Consensus 31 ~~~~~~~~~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~ik~~l~~l~~~~ 110 (308)
..++++.|+.|++.|++|+..|..|..++.+|..+|++.+..+.+.+...++.+|+.++..|+++++.|+..|+.|+..+
T Consensus 36 ~~~~~~~~~~F~~~~~~I~~~I~~i~~~l~~L~~l~~~~l~t~~~~~~~~~~~~ie~l~~~i~~~~~~i~~~lk~l~~~~ 115 (279)
T 2xhe_B 36 SAQPEPFMADFFNRVKRIRDNIEDIEQAIEQVAQLHTESLVAVSKEDRDRLNEKLQDTMARISALGNKIRADLKQIEKEN 115 (279)
T ss_dssp ----CCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667899999999999999999999999999999998877666666668999999999999999999999999999876
Q ss_pred HhhccCCCCCCC-ch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCChHHHHHHHhcCCc
Q 038457 111 LANRQKPGCEKG-TS-VDRSRMNVTNALTKRFKELMTEFQTLRQRIQEEYREVVERRVITVTGTRPDEETIDHLIETGNS 188 (308)
Q Consensus 111 ~~~~~~~~~~~~-~~-~~r~r~~~~~~L~~~f~~~~~~f~~~q~~~~~~~k~~~~r~~~~v~~~~~~~e~i~~~~~~~~~ 188 (308)
......++++.+ +. +.|++++++.+|+++|+++|.+|+.+|..|.+.++.++.| ++.+.+|.+++++++.++++|++
T Consensus 116 ~~~~~~~~~~~~~~~~e~r~~k~~~~~L~~~f~~~~~~Fq~~Q~~y~e~~k~~~~R-~~~i~~~~~~~ee~~~~~e~g~~ 194 (279)
T 2xhe_B 116 KRAQQEGTFEDGTVSTDLRIRQSQHSSLSRKFVKVMTRYNDVQAENKRRYGENVAR-QCRVVEPSLSDDAIQKVIEHGTE 194 (279)
T ss_dssp HTTHHHHCCSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT-SCCSSCCCCSSTTHHHHHHHC--
T ss_pred HHhhhcccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCCCHHHHHHHHhCCch
Confidence 543222223222 22 6699999999999999999999999999988888887765 45667788899999999988876
Q ss_pred hHHHHHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHH
Q 038457 189 EQIFQKAIQEQGRGQVLNTLEEIQERHDAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNVQSGTTALQ 268 (308)
Q Consensus 189 ~~~~q~~l~~~~~~q~~~~l~~i~~R~~eI~~ie~~I~EL~~lF~dla~LV~~Qge~iD~Ie~Nv~~a~~~v~~g~~~L~ 268 (308)
..|.+ .. ..+....+.++++||++|.+||++|.|||+||.|||.||++||++||+||+||+.|..||++|+.+|.
T Consensus 195 ~~f~q--~~---~~~~~~~~~~i~eR~~eI~~Ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~~~~~v~~~~~~l~ 269 (279)
T 2xhe_B 195 GIFSG--MR---LEGAEAKLNEIRDRHKDIQQLERSLLELHEMFTDMSTLVASQGEMIDRIEFSVEQSHNYVKKATEQVV 269 (279)
T ss_dssp --------------------CTTTHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSCSSTTCHHHHHHTCCCCC--------
T ss_pred HHHHH--HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54443 11 11234567789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccc
Q 038457 269 NAKKHQKSSR 278 (308)
Q Consensus 269 kA~~~qkk~r 278 (308)
+|.+|||++|
T Consensus 270 kA~~~qk~~R 279 (279)
T 2xhe_B 270 QARHYQESAR 279 (279)
T ss_dssp ----------
T ss_pred HHHHHhHccC
Confidence 9999999876
No 3
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=100.00 E-value=1.9e-32 Score=236.41 Aligned_cols=193 Identities=21% Similarity=0.412 Sum_probs=169.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCChhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHhhccC
Q 038457 37 GMEGFNKQIQEIEKQVDKLSALLKKLKDANEESKSVTKASEMKAIKKRMEKDVDEVGKIARNVKAKIEAINRENLANRQK 116 (308)
Q Consensus 37 ~~~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~ik~~l~~l~~~~~~~~~~ 116 (308)
.|+.|++.|++|+..|..|+.++..|..+|.+.++.+++.+.+.++.+|+.++.+|+++++.|+..|+.|+...
T Consensus 3 ~~~~f~~~~~~i~~~i~~i~~~v~~L~~l~~~~l~~~~~~~~~~~~~~i~~l~~~i~~~~~~~~~~lk~l~~~~------ 76 (196)
T 1fio_A 3 DFVGFMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQRDG------ 76 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------
Confidence 58999999999999999999999999999999888777776678999999999999999999999999998752
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCChHHHHHHHhcCCchHHHHHHH
Q 038457 117 PGCEKGTSVDRSRMNVTNALTKRFKELMTEFQTLRQRIQEEYREVVERRVITVTGTRPDEETIDHLIETGNSEQIFQKAI 196 (308)
Q Consensus 117 ~~~~~~~~~~r~r~~~~~~L~~~f~~~~~~f~~~q~~~~~~~k~~~~r~~~~v~~~~~~~e~i~~~~~~~~~~~~~q~~l 196 (308)
.+.|++++++.+|+++|+++|.+|+.+|..|.++||+++.|+|..+ +|++++++++.++++++...+|++.+
T Consensus 77 -------~~~r~~k~~~~~L~~~f~~~~~~fq~~Q~~~~~~~k~~~~rq~~i~-~~~~~~~e~~~~~~~~~~~~~f~~~~ 148 (196)
T 1fio_A 77 -------IHDTNKQAQAENSRQRFLKLIQDYRIVDSNYKEENKEQAKRQYMII-QPEATEDEVEAAISDVGGQQIFSQAL 148 (196)
T ss_dssp -------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CTTCCHHHHHHHTSHHHHHHHHHHHT
T ss_pred -------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCCHHHHHHHHHcCCchhHHHHHH
Confidence 1358999999999999999999999999999999999999887654 57899999988887655556677665
Q ss_pred HH-hhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038457 197 QE-QGRGQVLNTLEEIQERHDAVKEIEKKLLDLQQIYMDMAVLVEAQG 243 (308)
Q Consensus 197 ~~-~~~~q~~~~l~~i~~R~~eI~~ie~~I~EL~~lF~dla~LV~~Qg 243 (308)
+. ++++++...+.++++||++|.+||++|.|||+||.|||+||++||
T Consensus 149 ~~~~~~~~~~~~l~~i~eR~~eI~~IE~sI~EL~qiF~Dla~LV~~QG 196 (196)
T 1fio_A 149 LNANRRGEAKTALAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQ 196 (196)
T ss_dssp C------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCC
T ss_pred HhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44 345566788999999999999999999999999999999999998
No 4
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=99.96 E-value=1.3e-29 Score=197.67 Aligned_cols=95 Identities=34% Similarity=0.520 Sum_probs=85.7
Q ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcccchHH
Q 038457 203 QVLNTLEEIQERHDAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNVQSGTTALQNAKKHQKSSRKWMC 282 (308)
Q Consensus 203 q~~~~l~~i~~R~~eI~~ie~~I~EL~~lF~dla~LV~~Qge~iD~Ie~Nv~~a~~~v~~g~~~L~kA~~~qkk~rk~~c 282 (308)
+++.+++++++||++|.+||++|.|||+||.||+.||++||++||+||+||+.|.+||++|+.+|.+|.+|||++|||+|
T Consensus 8 ~a~~~l~~i~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~rkk~~ 87 (109)
T 3hd7_B 8 ISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKI 87 (109)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcce
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHH
Q 038457 283 IAIIILLIIVAVIVV 297 (308)
Q Consensus 283 ~~i~iviii~~iii~ 297 (308)
|++++++|+++++.+
T Consensus 88 i~l~~~~i~~~i~~~ 102 (109)
T 3hd7_B 88 MIIICCVILGIIIAS 102 (109)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred ehHHHHHHHHHHHHH
Confidence 887776666554443
No 5
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=99.93 E-value=2.3e-26 Score=168.42 Aligned_cols=76 Identities=37% Similarity=0.599 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHH
Q 038457 208 LEEIQERHDAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNVQSGTTALQNAKKHQKSSRKWMCI 283 (308)
Q Consensus 208 l~~i~~R~~eI~~ie~~I~EL~~lF~dla~LV~~Qge~iD~Ie~Nv~~a~~~v~~g~~~L~kA~~~qkk~rk~~c~ 283 (308)
|+++++||++|.+||++|.||++||.|||.||++||++||+||+||+.|..||++|..+|.+|.+|++++|||+||
T Consensus 2 l~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~q~~~rkk~~i 77 (77)
T 1jth_B 2 LSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIM 77 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccC
Confidence 6789999999999999999999999999999999999999999999999999999999999999999999999886
No 6
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=99.93 E-value=3.1e-25 Score=199.84 Aligned_cols=245 Identities=24% Similarity=0.420 Sum_probs=175.1
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCChhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Q 038457 31 RSSSDMGMEGFNKQIQEIEKQVDKLSALLKKLKDANEESKSVTKASEMKAIKKRMEKDVDEVGKIARNVKAKIEAINREN 110 (308)
Q Consensus 31 ~~~~~~~~~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~ik~~l~~l~~~~ 110 (308)
..+.+.+|++||..|++|...|..+...+.+|..++...+..... .......++.++.+++.++..++..++.+....
T Consensus 35 ~~~~~~~m~ef~~~ve~i~~~i~~i~~~v~el~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~i~~~~~~i~~~~ 112 (279)
T 3c98_B 35 TVDRDRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNP--DEKTKEELEELMSDIKKTANKVRSKLKSIEQSI 112 (279)
T ss_dssp ----CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSC--CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345577999999999999999999999999999999887654433 334567889999999999999999998888765
Q ss_pred HhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCChHHHHHHHhcCCchH
Q 038457 111 LANRQKPGCEKGTSVDRSRMNVTNALTKRFKELMTEFQTLRQRIQEEYREVVERRVITVTGTRPDEETIDHLIETGNSEQ 190 (308)
Q Consensus 111 ~~~~~~~~~~~~~~~~r~r~~~~~~L~~~f~~~~~~f~~~q~~~~~~~k~~~~r~~~~v~~~~~~~e~i~~~~~~~~~~~ 190 (308)
..... .++...+.+.+.+++..|...|...+..|...+..|...+++.+.+.. ...++..++.+.......+....
T Consensus 113 ~~~~~---i~~~~~~i~~~~~qtn~La~n~a~~~a~~~~~~~~~~~vva~evr~la-~~~~~~~~~~~~~~~~~~~~~~~ 188 (279)
T 3c98_B 113 EQEEG---LNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQRQL-EITGRTTTSEELEDMLESGNPAI 188 (279)
T ss_dssp HHHHT---TTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHTCCCCHHHHHHHHHSCCTTS
T ss_pred HHhhh---hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhccCccchHHHHHHHhhhhHH
Confidence 43322 234456789999999999999999999999999999888888886543 33445555554433333333222
Q ss_pred HHHHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 038457 191 IFQKAIQEQGRGQVLNTLEEIQERHDAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNVQSGTTALQNA 270 (308)
Q Consensus 191 ~~q~~l~~~~~~q~~~~l~~i~~R~~eI~~ie~~I~EL~~lF~dla~LV~~Qge~iD~Ie~Nv~~a~~~v~~g~~~L~kA 270 (308)
+..... ....+....+.++++|+.++..|+.+|.+|+++|.+|+.+|.+||+++|+|++||+.+.++|+.|..+|.+|
T Consensus 189 ~~~~~~--~~~~~~~~~~~~i~~~~~~i~~I~~~i~ei~~~~~~ia~~v~eQ~~~~~~I~~nv~~~~~~v~~~~~el~~A 266 (279)
T 3c98_B 189 FASGII--MDSSISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKA 266 (279)
T ss_dssp STTTSC--SCSSSTTHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC------
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 211110 111223456788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcccchHHH
Q 038457 271 KKHQKSSRKWMCI 283 (308)
Q Consensus 271 ~~~qkk~rk~~c~ 283 (308)
.+|++++|||+||
T Consensus 267 ~~~q~~~Rkkk~i 279 (279)
T 3c98_B 267 VKYQSKARRKKIM 279 (279)
T ss_dssp -------------
T ss_pred HHHHHHHhCcCcC
Confidence 9999999999885
No 7
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=99.91 E-value=2.5e-24 Score=155.04 Aligned_cols=70 Identities=36% Similarity=0.602 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcccchH
Q 038457 212 QERHDAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNVQSGTTALQNAKKHQKSSRKWM 281 (308)
Q Consensus 212 ~~R~~eI~~ie~~I~EL~~lF~dla~LV~~Qge~iD~Ie~Nv~~a~~~v~~g~~~L~kA~~~qkk~rk~~ 281 (308)
++||++|.+||++|.||++||.|||.||++||++||+||+||+.|..||++|..+|.+|.+|++++|||+
T Consensus 2 ~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~~rk~~ 71 (71)
T 2nps_B 2 SMRETAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYYQKKSRKKM 71 (71)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC---
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 4799999999999999999999999999999999999999999999999999999999999999999985
No 8
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=99.90 E-value=1.1e-23 Score=156.26 Aligned_cols=76 Identities=37% Similarity=0.587 Sum_probs=70.0
Q ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhccc
Q 038457 203 QVLNTLEEIQERHDAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNVQSGTTALQNAKKHQKSSR 278 (308)
Q Consensus 203 q~~~~l~~i~~R~~eI~~ie~~I~EL~~lF~dla~LV~~Qge~iD~Ie~Nv~~a~~~v~~g~~~L~kA~~~qkk~r 278 (308)
+++..+.++++||++|.+||++|.||++||.||+.||++||++||+||+||+.|..||++|..+|.+|.+|++++|
T Consensus 8 ~~~~~l~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~~r 83 (83)
T 1sfc_B 8 ISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKAR 83 (83)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHccC
Confidence 3456789999999999999999999999999999999999999999999999999999999999999999999876
No 9
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=99.89 E-value=6.2e-23 Score=146.81 Aligned_cols=68 Identities=34% Similarity=0.504 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhh
Q 038457 208 LEEIQERHDAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNVQSGTTALQNAKKHQK 275 (308)
Q Consensus 208 l~~i~~R~~eI~~ie~~I~EL~~lF~dla~LV~~Qge~iD~Ie~Nv~~a~~~v~~g~~~L~kA~~~qk 275 (308)
|.++++|+++|.+||++|.||++||.||+.||.+||++||+||+||+.|..||++|..+|.+|.+|||
T Consensus 2 l~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~qr 69 (69)
T 3b5n_B 2 LAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKAVKSAR 69 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 67899999999999999999999999999999999999999999999999999999999999999985
No 10
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=99.89 E-value=3e-23 Score=176.50 Aligned_cols=173 Identities=18% Similarity=0.334 Sum_probs=103.4
Q ss_pred CcchhhhhhccccCCCCCCCcCcccCCCCCCCC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCChhhHH
Q 038457 1 MNDLLTDSFVSDARGQPSRDNDIEMGTRVPRSS-SDMGMEGFNKQIQEIEKQVDKLSALLKKLKDANEESKSVTKASEMK 79 (308)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-~~~~~~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~ 79 (308)
|.|||.+.. +++...+. ..+. ...++ ++++|+.||+.|++|+..|..|..++.+|+.+|..+++.+ ...+
T Consensus 7 mkDRl~eL~-~~~~~~~~-~~~~-----~~~~~~~~~~m~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~--~~~~ 77 (180)
T 1s94_A 7 TKDRLAALK-AAVSDEED-VEEV-----AVQVDSGGGFMEEFFEQVEEIRAMIDKISDNVDAVKKKHSDILSAP--QTDD 77 (180)
T ss_dssp ------------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------
T ss_pred hhHHHHHHh-ccccCCCc-cccc-----cccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CchH
Confidence 889999887 54332110 1111 12344 6789999999999999999999999999999999987653 4566
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038457 80 AIKKRMEKDVDEVGKIARNVKAKIEAINRENLANRQKPGCEKGTSVDRSRMNVTNALTKRFKELMTEFQTLRQRIQEEYR 159 (308)
Q Consensus 80 ~l~~~i~~~~~~i~~~~~~ik~~l~~l~~~~~~~~~~~~~~~~~~~~r~r~~~~~~L~~~f~~~~~~f~~~q~~~~~~~k 159 (308)
.++.+|+.++.+|+++++.|+..|+.|++.+... +++++++++.|+|++|+.+|+++|+++|.+|+.+|..|+++||
T Consensus 78 ~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~~~~~---~~~~~~s~~~Rir~~q~~~L~~kf~~~m~~yq~~q~~y~~~~K 154 (180)
T 1s94_A 78 QMKEELEELMTDIKRTANKVRGKLKTIELNIEQE---EHSNKSSADLRIRKTQYSTISRKFVEVMSDYNTTQIDYRDRCK 154 (180)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---C-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999886543 3455667788999999999999999999999999999999999
Q ss_pred HHHHHHhhhccCCCCChHHHHHHHhcC
Q 038457 160 EVVERRVITVTGTRPDEETIDHLIETG 186 (308)
Q Consensus 160 ~~~~r~~~~v~~~~~~~e~i~~~~~~~ 186 (308)
++++| |+.+.||++|++++++++++|
T Consensus 155 ~~i~R-q~~I~~~~~teeeie~~ie~G 180 (180)
T 1s94_A 155 ARIKR-QMEITGRTTTNEELEDMLESG 180 (180)
T ss_dssp CC-------------------------
T ss_pred HHHHH-HHHHhCCCCCHHHHHHHHhCc
Confidence 99986 457788999999999999875
No 11
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=99.86 E-value=1.4e-21 Score=139.42 Aligned_cols=66 Identities=38% Similarity=0.652 Sum_probs=63.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 038457 206 NTLEEIQERHDAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNVQSGTTALQNAK 271 (308)
Q Consensus 206 ~~l~~i~~R~~eI~~ie~~I~EL~~lF~dla~LV~~Qge~iD~Ie~Nv~~a~~~v~~g~~~L~kA~ 271 (308)
.++.++++||++|.+||++|.||++||.||+.||.+||++||+||+||+.|..||++|+.+|.+|.
T Consensus 2 ~~l~~i~eR~~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~ 67 (68)
T 1n7s_B 2 SALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAV 67 (68)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 357899999999999999999999999999999999999999999999999999999999999985
No 12
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=99.84 E-value=4e-21 Score=135.66 Aligned_cols=63 Identities=27% Similarity=0.641 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 038457 210 EIQERHDAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNVQSGTTALQNAKK 272 (308)
Q Consensus 210 ~i~~R~~eI~~ie~~I~EL~~lF~dla~LV~~Qge~iD~Ie~Nv~~a~~~v~~g~~~L~kA~~ 272 (308)
++++|+++|.+||++|.||++||.||+.||++||++||+||+||+.|..||++|..+|.+|.+
T Consensus 3 ~i~eR~~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~k 65 (65)
T 1gl2_B 3 HMHERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSRAAN 65 (65)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 578999999999999999999999999999999999999999999999999999999999864
No 13
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=99.77 E-value=5.5e-18 Score=135.80 Aligned_cols=123 Identities=20% Similarity=0.348 Sum_probs=107.7
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCChhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHhh
Q 038457 34 SDMGMEGFNKQIQEIEKQVDKLSALLKKLKDANEESKSVTKASEMKAIKKRMEKDVDEVGKIARNVKAKIEAINRENLAN 113 (308)
Q Consensus 34 ~~~~~~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~ik~~l~~l~~~~~~~ 113 (308)
++++|+.||+.|++|+..|..|+..+.+|..+|..+++.+++ .+.++.+|+.++.+|+++++.|+..|+.|+..+...
T Consensus 3 ~~~~m~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~--~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~~~~~ 80 (127)
T 1ez3_A 3 RDRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNP--DEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQE 80 (127)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567899999999999999999999999999999998876554 456899999999999999999999999999987642
Q ss_pred ccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038457 114 RQKPGCEKGTSVDRSRMNVTNALTKRFKELMTEFQTLRQRIQEEYREV 161 (308)
Q Consensus 114 ~~~~~~~~~~~~~r~r~~~~~~L~~~f~~~~~~f~~~q~~~~~~~k~~ 161 (308)
+++++++++.|+|++|+.+|+++|+++|.+|+.+|..|++.++.+
T Consensus 81 ---~~~~~~s~~~Rir~~q~~~L~~kf~e~m~~y~~~q~~yre~~k~r 125 (127)
T 1ez3_A 81 ---EGLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGR 125 (127)
T ss_dssp ---HTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred ---cccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667888999999999999999999999999887666665543
No 14
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=1e-08 Score=81.84 Aligned_cols=115 Identities=15% Similarity=0.293 Sum_probs=97.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCChhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHhhccC
Q 038457 37 GMEGFNKQIQEIEKQVDKLSALLKKLKDANEESKSVTKASEMKAIKKRMEKDVDEVGKIARNVKAKIEAINRENLANRQK 116 (308)
Q Consensus 37 ~~~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~ik~~l~~l~~~~~~~~~~ 116 (308)
..++|-..++.|...|..|+.++..|+.+.+.. +++.|..+++++|+.+...++.+++.+...|+.|.....
T Consensus 8 d~~ef~~l~~~is~~I~~In~~vs~l~r~v~~L---GT~kDt~~LR~kl~~~~~~t~~l~k~ts~~lk~L~~~~~----- 79 (130)
T 2dnx_A 8 QLRDFSSIIQTCSGNIQRISQATAQIKNLMSQL---GTKQDSSKLQENLQQLQHSTNQLAKETNELLKELGSLPL----- 79 (130)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC-----
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----
Confidence 456799999999999999999999999888764 456788899999999999999999999999999986410
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038457 117 PGCEKGTSVDRSRMNVTNALTKRFKELMTEFQTLRQRIQEEYREVV 162 (308)
Q Consensus 117 ~~~~~~~~~~r~r~~~~~~L~~~f~~~~~~f~~~q~~~~~~~k~~~ 162 (308)
. ....+.|.++.+...|.++|.+++++|+.+|..+.++.|..+
T Consensus 80 -~--~~~~~~r~~k~q~~KL~~dF~~~L~~FQ~~Qr~~aekek~~~ 122 (130)
T 2dnx_A 80 -P--LSTSEQRQQRLQKERLMNDFSAALNNFQAVQRRVSEKEKESI 122 (130)
T ss_dssp -C--SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -c--cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 0 112467889999999999999999999999988887766554
No 15
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=97.53 E-value=0.0035 Score=47.98 Aligned_cols=88 Identities=17% Similarity=0.312 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHH
Q 038457 208 LEEIQERHDAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNVQSGTTALQNAKKHQKSSRKWMCIAIII 287 (308)
Q Consensus 208 l~~i~~R~~eI~~ie~~I~EL~~lF~dla~LV~~Qge~iD~Ie~Nv~~a~~~v~~g~~~L~kA~~~qkk~rk~~c~~i~i 287 (308)
..++..=++.|.+|..-..+|..|..+=+.+|..=...+++...||+.+...+.+|.+.=+++++ ..+|+++++++
T Consensus 20 ~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~rk----k~~i~l~~~~i 95 (109)
T 3hd7_B 20 HSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARR----KKIMIIICCVI 95 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC----cceehHHHHHH
Confidence 45566667888899999999999999999999999999999999999999999999977555433 45777766666
Q ss_pred HHHHHHHHHHHH
Q 038457 288 LLIIVAVIVVGV 299 (308)
Q Consensus 288 viii~~iii~~i 299 (308)
+++|+.+++.+.
T Consensus 96 ~~~i~~~~~~~~ 107 (109)
T 3hd7_B 96 LGIIIASTIGGI 107 (109)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHhccc
Confidence 666666666543
No 16
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=97.52 E-value=0.0023 Score=47.32 Aligned_cols=43 Identities=7% Similarity=0.103 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHH
Q 038457 216 DAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVT 258 (308)
Q Consensus 216 ~eI~~ie~~I~EL~~lF~dla~LV~~Qge~iD~Ie~Nv~~a~~ 258 (308)
..+.++...+.|+..+..+=-.-|-+.||-||.++.-.+.-..
T Consensus 5 d~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~ 47 (91)
T 3hd7_A 5 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQA 47 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHH
Confidence 4578889999999999999988999999999998877665433
No 17
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=97.33 E-value=0.0024 Score=47.61 Aligned_cols=86 Identities=15% Similarity=0.295 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhcCChhhHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHhhHhhccCCCCCCCch
Q 038457 46 QEIEKQVDKLSALLKKLKDANEESKSVTKASEMKAIKKRME-KDVDEVGKIARNVKAKIEAINRENLANRQKPGCEKGTS 124 (308)
Q Consensus 46 ~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~-~~~~~i~~~~~~ik~~l~~l~~~~~~~~~~~~~~~~~~ 124 (308)
.+...-|..+..+|+.|+.+..+. ++..|..+++..|+ .++..++.+.+.|. .+..+
T Consensus 6 ~d~~~li~t~s~niq~l~k~~~ql---GTkrD~~~LR~~l~~~l~~~~~~L~k~~~-~l~~l------------------ 63 (97)
T 1hs7_A 6 KELSNLIETFAEQSRVLEKECTKI---GSKRDSKELRYKIETELIPNCTSVRDKIE-SNILI------------------ 63 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT---TSSSCCHHHHHHHHHTHHHHHHHHHHHHH-HSTHH------------------
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHh---CCCcchHHHHHHHHHHHHHHHHHHHHHHH-Hhccc------------------
Confidence 344455666666777777766664 45567788999999 99999999998887 11111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038457 125 VDRSRMNVTNALTKRFKELMTEFQTLRQRIQEEYR 159 (308)
Q Consensus 125 ~~r~r~~~~~~L~~~f~~~~~~f~~~q~~~~~~~k 159 (308)
.+...|..+|..+...|+.+|..|.++.+
T Consensus 64 ------~qkeRL~~dF~~l~~~fQ~~qr~y~ek~~ 92 (97)
T 1hs7_A 64 ------HQNGKLSADFKNLKTKYQSLQQSYNQRKS 92 (97)
T ss_dssp ------HHCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------chhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 14667889999999999999988776544
No 18
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=96.82 E-value=0.014 Score=40.34 Aligned_cols=55 Identities=13% Similarity=0.296 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 038457 215 HDAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNVQSGTTALQN 269 (308)
Q Consensus 215 ~~eI~~ie~~I~EL~~lF~dla~LV~~Qge~iD~Ie~Nv~~a~~~v~~g~~~L~k 269 (308)
.+.+..|...+..|+.|-.+|+.-|..|..+||+|+..++.+...+..+.+.+.+
T Consensus 9 D~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~~l~~~~~rl~~ 63 (66)
T 1n7s_D 9 DENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATK 63 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3568899999999999999999999999999999999999999999999887764
No 19
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=96.73 E-value=0.0072 Score=43.74 Aligned_cols=61 Identities=8% Similarity=0.171 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 038457 213 ERHDAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNVQSGTTALQNAKKH 273 (308)
Q Consensus 213 ~R~~eI~~ie~~I~EL~~lF~dla~LV~~Qge~iD~Ie~Nv~~a~~~v~~g~~~L~kA~~~ 273 (308)
+-.+.+..|..+|..|+.|-.+|+.-|.+|..+||.++..++.+...+..+.+.+.+-.+.
T Consensus 16 eQD~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~~ 76 (82)
T 2nps_D 16 MQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSHM 76 (82)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3346689999999999999999999999999999999999999999999999999887664
No 20
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=96.56 E-value=0.01 Score=40.90 Aligned_cols=56 Identities=13% Similarity=0.252 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 038457 214 RHDAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNVQSGTTALQN 269 (308)
Q Consensus 214 R~~eI~~ie~~I~EL~~lF~dla~LV~~Qge~iD~Ie~Nv~~a~~~v~~g~~~L~k 269 (308)
-.+.+..|..++..|++|-.+|+.-|..|..+||+++..++.+...+..+.+.+.+
T Consensus 7 qD~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl~~ 62 (65)
T 1gl2_D 7 QDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTL 62 (65)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34668899999999999999999999999999999999999999999988877654
No 21
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=96.52 E-value=0.024 Score=41.39 Aligned_cols=55 Identities=13% Similarity=0.296 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 038457 215 HDAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNVQSGTTALQN 269 (308)
Q Consensus 215 ~~eI~~ie~~I~EL~~lF~dla~LV~~Qge~iD~Ie~Nv~~a~~~v~~g~~~L~k 269 (308)
.+.+..|...+..|+.|-.+|+.-|..|..+||+|+..++.+...+..+++.+.+
T Consensus 28 D~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~ 82 (87)
T 1sfc_D 28 DENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATK 82 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4568999999999999999999999999999999999999999999999887764
No 22
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=96.00 E-value=0.0015 Score=50.83 Aligned_cols=40 Identities=8% Similarity=0.128 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHH
Q 038457 216 DAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSN 255 (308)
Q Consensus 216 ~eI~~ie~~I~EL~~lF~dla~LV~~Qge~iD~Ie~Nv~~ 255 (308)
..+.++...+.|+..++.+=-.-|.+.||-||.++...+.
T Consensus 33 d~l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~ 72 (119)
T 2kog_A 33 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADA 72 (119)
T ss_dssp SHHHHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 3477788888889888888888899999999988876654
No 23
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=95.92 E-value=0.032 Score=40.72 Aligned_cols=55 Identities=15% Similarity=0.312 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 038457 215 HDAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNVQSGTTALQN 269 (308)
Q Consensus 215 ~~eI~~ie~~I~EL~~lF~dla~LV~~Qge~iD~Ie~Nv~~a~~~v~~g~~~L~k 269 (308)
.+.+..|...+..|+.|=.+|+.-|..|.++||+|+..++.+...+..+++.+.+
T Consensus 29 D~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~k 83 (87)
T 1l4a_D 29 ENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKATK 83 (87)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4668899999999999999999999999999999999999999999999887765
No 24
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=95.83 E-value=0.093 Score=35.92 Aligned_cols=54 Identities=19% Similarity=0.270 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 038457 216 DAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNVQSGTTALQN 269 (308)
Q Consensus 216 ~eI~~ie~~I~EL~~lF~dla~LV~~Qge~iD~Ie~Nv~~a~~~v~~g~~~L~k 269 (308)
+.+..|...+.-|+.|=.+|+.-|..|-++||+|+..++.+...+..+++.|.+
T Consensus 10 ~nLd~l~~~~~rlk~ma~~mg~Eid~QN~~ldrI~~k~d~~d~ri~~~~~Rl~~ 63 (64)
T 3b5n_D 10 RNLDQIQQVSNRLKKMALTTGKELDSQQKRLNNIEESTDDLDINLHMNTNRLAG 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 558888999999999999999999999999999999999999999998887753
No 25
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=95.40 E-value=0.13 Score=33.95 Aligned_cols=40 Identities=18% Similarity=0.280 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHH
Q 038457 229 QQIYMDMAVLVEAQGEILDNIESQVSNAVTNVQSGTTALQ 268 (308)
Q Consensus 229 ~~lF~dla~LV~~Qge~iD~Ie~Nv~~a~~~v~~g~~~L~ 268 (308)
.++=..-...+..|||.|++|+.+++....++..|.+.|.
T Consensus 13 e~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~l~~a~k~L~ 52 (54)
T 1nhl_A 13 QDAGIKTITMLDEQKEQLNRIEEGLDQINKDMRETEKTLT 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHhhHHHHHhHHHHHHhHHHHHHHHHh
Confidence 3333444456788999999999999999999999998874
No 26
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=94.04 E-value=1 Score=31.96 Aligned_cols=51 Identities=16% Similarity=0.332 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 038457 219 KEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNVQSGTTALQN 269 (308)
Q Consensus 219 ~~ie~~I~EL~~lF~dla~LV~~Qge~iD~Ie~Nv~~a~~~v~~g~~~L~k 269 (308)
++-.+-+.|-.++=..-....+.|||.|++|+.++..+..++..|.+.|..
T Consensus 26 ~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~l~~a~k~L~~ 76 (79)
T 1n7s_C 26 RRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKEAEKNLKD 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhHHHHHHHHHhh
Confidence 333344445555555666678899999999999999999999999988853
No 27
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=93.86 E-value=0.6 Score=32.41 Aligned_cols=36 Identities=19% Similarity=0.255 Sum_probs=31.1
Q ss_pred HHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 038457 238 LVEAQGEILDNIESQVSNAVTNVQSGTTALQNAKKH 273 (308)
Q Consensus 238 LV~~Qge~iD~Ie~Nv~~a~~~v~~g~~~L~kA~~~ 273 (308)
+...|||.|++||.|++.+..+...|.++|..=..+
T Consensus 34 ~L~~QgEqL~rtE~~ld~i~~~~k~aek~l~~Lk~~ 69 (70)
T 3b5n_C 34 MLGHQSEQLNNVEGNLDLMKVQNKVADEKVAELKKL 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 466899999999999999999999999988765544
No 28
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=89.42 E-value=0.71 Score=33.17 Aligned_cols=31 Identities=29% Similarity=0.512 Sum_probs=25.6
Q ss_pred HHHHHhhHHHHHHHhhHHHHHHHHHHHHHHH
Q 038457 237 VLVEAQGEILDNIESQVSNAVTNVQSGTTAL 267 (308)
Q Consensus 237 ~LV~~Qge~iD~Ie~Nv~~a~~~v~~g~~~L 267 (308)
.+...|||.|+|||.+++....+...|.+.|
T Consensus 48 ~~L~~QgEQL~rie~~ld~I~~dl~~Aek~L 78 (83)
T 1l4a_C 48 VMLDEQGEQLDRIEEGLDQINQDMKDAEKNL 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSGGGCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999999888877776554
No 29
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=83.45 E-value=11 Score=29.24 Aligned_cols=96 Identities=16% Similarity=0.213 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCChhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHhhccCCC-
Q 038457 40 GFNKQIQEIEKQVDKLSALLKKLKDANEESKSVTKASEMKAIKKRMEKDVDEVGKIARNVKAKIEAINRENLANRQKPG- 118 (308)
Q Consensus 40 ~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~ik~~l~~l~~~~~~~~~~~~- 118 (308)
=||.-.+++...|..++.....-..+....... + +.++..+..++...+..+...|.+|++.+.-..+.|.
T Consensus 28 PF~~Vk~EVq~sl~~l~~l~~~w~~l~~~~~~~-s-------~~E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~np~k 99 (130)
T 4dnd_A 28 PFFVVRGEVQKAVNTARGLYQRWCELLQESAAV-G-------REELDWTTNELRNGLRSIEWDLEDLEETIGIVEANPGK 99 (130)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHC-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCc-c-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHh
Confidence 488888899988888887776654443321111 1 1344455556666666666666666665432211110
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHH
Q 038457 119 CEKGTSVDRSRMNVTNALTKRFKEL 143 (308)
Q Consensus 119 ~~~~~~~~r~r~~~~~~L~~~f~~~ 143 (308)
.+-+..+..-|+..+..+...+.++
T Consensus 100 F~l~~~Ei~~Rr~fV~~~r~~I~~m 124 (130)
T 4dnd_A 100 FKLPAGDLQERKVFVERMREAVQEM 124 (130)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 0112234555666666665555443
No 30
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=76.98 E-value=15 Score=25.06 Aligned_cols=63 Identities=17% Similarity=0.267 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 038457 210 EIQERHDAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNVQSGTTALQNAKK 272 (308)
Q Consensus 210 ~i~~R~~eI~~ie~~I~EL~~lF~dla~LV~~Qge~iD~Ie~Nv~~a~~~v~~g~~~L~kA~~ 272 (308)
++..=++.|..|..-..+|+.|..+=+.+|..=..-+++...||..+...+.+|.+.-+++++
T Consensus 7 ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~~rk 69 (71)
T 2nps_B 7 AIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYYQKKSRK 69 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 455556778888888999999999999999999999999999999999999999887765543
No 31
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=73.75 E-value=3.5 Score=31.62 Aligned_cols=17 Identities=41% Similarity=0.475 Sum_probs=6.4
Q ss_pred chHHHHHHHHHHHHHHH
Q 038457 279 KWMCIAIIILLIIVAVI 295 (308)
Q Consensus 279 k~~c~~i~iviii~~ii 295 (308)
|+++++++++++++++|
T Consensus 97 K~~iii~~iv~iii~iI 113 (119)
T 2kog_A 97 KMMIILGVICAIILIII 113 (119)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 44443333333333333
No 32
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=73.38 E-value=18 Score=24.29 Aligned_cols=44 Identities=18% Similarity=0.231 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHH
Q 038457 225 LLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNVQSGTTALQ 268 (308)
Q Consensus 225 I~EL~~lF~dla~LV~~Qge~iD~Ie~Nv~~a~~~v~~g~~~L~ 268 (308)
+.|--++=.....-...|+|.|.+....+..+..++..+.+.|.
T Consensus 18 ~~ETE~iG~~~l~~L~~QREql~~t~~~l~~~d~~l~~s~k~L~ 61 (65)
T 1gl2_C 18 ATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILR 61 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhHHHhHHHhHHhHHHHHHHHHH
Confidence 33444444444455778999999999999999999999988775
No 33
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=72.62 E-value=68 Score=30.63 Aligned_cols=24 Identities=17% Similarity=0.297 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 038457 131 NVTNALTKRFKELMTEFQTLRQRI 154 (308)
Q Consensus 131 ~~~~~L~~~f~~~~~~f~~~q~~~ 154 (308)
.+...|...+.+...+.++++..+
T Consensus 131 snIrvLQsnLedq~~kIQRLEvDI 154 (562)
T 3ghg_A 131 QHIQLLQKNVRAQLVDMKRLEVDI 154 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566666666666666665444
No 34
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=71.45 E-value=59 Score=29.73 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Q 038457 46 QEIEKQVDKLSALLKKLKDANEES 69 (308)
Q Consensus 46 ~~I~~~I~~i~~~i~~L~~l~~~~ 69 (308)
..+...|..|+..|..+.+.++..
T Consensus 63 r~~~~rIe~L~~~L~~~s~s~~~~ 86 (390)
T 1deq_A 63 QDFTSRINKLRDSLFNYQKNSKDS 86 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHH
Confidence 567777888888888887777654
No 35
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=69.55 E-value=23 Score=23.87 Aligned_cols=50 Identities=10% Similarity=0.263 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHH
Q 038457 214 RHDAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNVQSG 263 (308)
Q Consensus 214 R~~eI~~ie~~I~EL~~lF~dla~LV~~Qge~iD~Ie~Nv~~a~~~v~~g 263 (308)
=++.|..|..-..+|..|..+=+.+|..=...++.-..||+.+...+.+|
T Consensus 17 Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA 66 (68)
T 1n7s_B 17 LENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKA 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555555555555555555555555555444
No 36
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=67.77 E-value=33 Score=24.98 Aligned_cols=41 Identities=7% Similarity=0.115 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHH
Q 038457 216 DAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNA 256 (308)
Q Consensus 216 ~eI~~ie~~I~EL~~lF~dla~LV~~Qge~iD~Ie~Nv~~a 256 (308)
..|.++...+.|+..++.+=-.-|.+.||-||.++.-.+.-
T Consensus 30 d~l~~vq~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~L 70 (96)
T 1sfc_A 30 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADAL 70 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 45888889999999999999999999999999987766553
No 37
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=65.35 E-value=31 Score=23.81 Aligned_cols=64 Identities=13% Similarity=0.269 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 038457 209 EEIQERHDAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNVQSGTTALQNAKK 272 (308)
Q Consensus 209 ~~i~~R~~eI~~ie~~I~EL~~lF~dla~LV~~Qge~iD~Ie~Nv~~a~~~v~~g~~~L~kA~~ 272 (308)
.++..=++.|..|..-..+|..|..+=+.+|..=...++.-..||+.+...+.+|.+.-+++++
T Consensus 10 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~q~~~rk 73 (77)
T 1jth_B 10 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARR 73 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3455556778888888889999999989999888888999999999999999999887766554
No 38
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=64.35 E-value=30 Score=23.35 Aligned_cols=55 Identities=9% Similarity=0.238 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHH
Q 038457 211 IQERHDAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNVQSGTT 265 (308)
Q Consensus 211 i~~R~~eI~~ie~~I~EL~~lF~dla~LV~~Qge~iD~Ie~Nv~~a~~~v~~g~~ 265 (308)
+..=++.|..|..-..+|..|..+=+.+|..=...++.-..||+.+...+.+|.+
T Consensus 12 i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~ 66 (69)
T 3b5n_B 12 LLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKAVK 66 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555666666666666666666666666666666666666666666654
No 39
>3n27_A Fusion glycoprotein F0, linker, fusion glycoprote; fusion protein, chimera protein, fusion inhibitor, antivirus viral protein; HET: CIT; 1.80A {Hendravirus}
Probab=64.18 E-value=27 Score=24.45 Aligned_cols=61 Identities=11% Similarity=0.256 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 038457 211 IQERHDAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNVQSGTTALQNAKKH 273 (308)
Q Consensus 211 i~~R~~eI~~ie~~I~EL~~lF~dla~LV~~Qge~iD~Ie~Nv~~a~~~v~~g~~~L~kA~~~ 273 (308)
++.-++.|.+|......+.-..+-+..-|..+|.+ .|--|...|....+.....|.|++..
T Consensus 15 Iq~TN~AV~eL~~a~~~t~iAIqaIQd~IN~~~~~--dis~~l~~a~~~l~~sk~~~~~~~~~ 75 (80)
T 3n27_A 15 IESTNEAVVKLQETAEKTVYVLTALQDYSGGSGGI--DISIELNKAKSDLEESKEWIRRSNQK 75 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSCC-----CH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc--chhhhHhHHHhhHHHHHHHHHHHHHH
Confidence 56667777777777777777777666667777765 57778889999999999999888653
No 40
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=63.66 E-value=38 Score=24.29 Aligned_cols=21 Identities=14% Similarity=0.378 Sum_probs=10.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 038457 206 NTLEEIQERHDAVKEIEKKLL 226 (308)
Q Consensus 206 ~~l~~i~~R~~eI~~ie~~I~ 226 (308)
..++.+-+|.+.+..|...-.
T Consensus 23 ~NI~kvL~RgekL~~L~~kt~ 43 (91)
T 3hd7_A 23 VNVDKVLERDQKLSELDDRAD 43 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHH
Confidence 344555555555555444333
No 41
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=61.67 E-value=33 Score=22.87 Aligned_cols=54 Identities=13% Similarity=0.244 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHH
Q 038457 211 IQERHDAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNVQSGT 264 (308)
Q Consensus 211 i~~R~~eI~~ie~~I~EL~~lF~dla~LV~~Qge~iD~Ie~Nv~~a~~~v~~g~ 264 (308)
+..=++.|..|..-..+|..|..+=+.+|..=..-+++-..||..+...+.+|.
T Consensus 11 i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~ 64 (65)
T 1gl2_B 11 IRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSRAA 64 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 333345555555556666666666666666666666666666666666665553
No 42
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=58.08 E-value=38 Score=23.18 Aligned_cols=38 Identities=16% Similarity=0.359 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHH
Q 038457 218 VKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSN 255 (308)
Q Consensus 218 I~~ie~~I~EL~~lF~dla~LV~~Qge~iD~Ie~Nv~~ 255 (308)
|.++...+.|+..+..+=-.-|.+.||-||.+..-.+.
T Consensus 10 l~~vq~el~ev~~iM~~NI~~vL~RgekLd~L~~ks~~ 47 (74)
T 2nps_A 10 IKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSES 47 (74)
T ss_dssp SHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 66777788888888888888888999999988766555
No 43
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=49.31 E-value=67 Score=22.70 Aligned_cols=51 Identities=18% Similarity=0.368 Sum_probs=38.6
Q ss_pred HHHHHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038457 190 QIFQKAIQEQGRGQVLNTLEEIQERHDAVKEIEKKLLDLQQIYMDMAVLVEA 241 (308)
Q Consensus 190 ~~~q~~l~~~~~~q~~~~l~~i~~R~~eI~~ie~~I~EL~~lF~dla~LV~~ 241 (308)
.+.+ .+.+.++..+..+|.+-+.=|..|..++.-|..|..+..++..|+..
T Consensus 28 ~YWk-~lAE~RR~AL~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae~ 78 (83)
T 1uii_A 28 QYWK-EVAEKRRKALYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEH 78 (83)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3443 34555555556778888888889999999999999999998888764
No 44
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=47.48 E-value=69 Score=22.34 Aligned_cols=60 Identities=12% Similarity=0.240 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHH
Q 038457 209 EEIQERHDAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNVQSGTTALQ 268 (308)
Q Consensus 209 ~~i~~R~~eI~~ie~~I~EL~~lF~dla~LV~~Qge~iD~Ie~Nv~~a~~~v~~g~~~L~ 268 (308)
.++..=++.|..|..-..+|..|..+=+.+|..=..-++....||+.+...+.+|.+.-+
T Consensus 21 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk 80 (83)
T 1sfc_B 21 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQS 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 445555677888888888888888888888888888888888888888888888876543
No 45
>2lk9_A Bone marrow stromal antigen 2; membrane, micelle, antiviral protein-immune system complex; NMR {Homo sapiens}
Probab=46.72 E-value=21 Score=20.68 Aligned_cols=10 Identities=70% Similarity=1.125 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 038457 283 IAIIILLIIV 292 (308)
Q Consensus 283 ~~i~iviii~ 292 (308)
.+++++++|+
T Consensus 9 ~Gvl~LLviV 18 (35)
T 2lk9_A 9 IGILVLLIIV 18 (35)
T ss_dssp HHHHHHHHHH
T ss_pred ccHHHHHHHH
Confidence 3444433333
No 46
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=46.45 E-value=11 Score=32.06 Aligned_cols=216 Identities=11% Similarity=0.177 Sum_probs=104.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCChhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHhhccC
Q 038457 37 GMEGFNKQIQEIEKQVDKLSALLKKLKDANEESKSVTKASEMKAIKKRMEKDVDEVGKIARNVKAKIEAINRENLANRQK 116 (308)
Q Consensus 37 ~~~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~ik~~l~~l~~~~~~~~~~ 116 (308)
.....-..++.|...+..+......+....... .........+...+..+...+......+....+....... .
T Consensus 48 ~ve~i~~~i~~i~~~v~el~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~i~~~~~~i~~~~~~~~~i~~----~ 121 (279)
T 3c98_B 48 QVEEIRGFIDKIAENVEEVKRKHSAILASPNPD--EKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNR----S 121 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCC--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC----C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc----c
Confidence 345667777888888888877766553322211 1112334455666777777777777777665554433210 0
Q ss_pred CCCC--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------hhccCCCCChHHHHHHHh
Q 038457 117 PGCE--KGTSVDRSRMNVTNALTKRFKELMTEFQTLRQRIQEEYREVVERRV----------ITVTGTRPDEETIDHLIE 184 (308)
Q Consensus 117 ~~~~--~~~~~~r~r~~~~~~L~~~f~~~~~~f~~~q~~~~~~~k~~~~r~~----------~~v~~~~~~~e~i~~~~~ 184 (308)
...- .......+. .-......+|...-..|..+. +...+....+-. ..+.+ .+......+..
T Consensus 122 ~~~i~~~~~qtn~La-~n~a~~~a~~~~~~~~~~~vv---a~evr~la~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 195 (279)
T 3c98_B 122 SADLRIRKTQHSTLS-RKFVEVMSEYNATQSDYRERC---KGRIQRQLEITGRTTTSEELEDMLESG--NPAIFASGIIM 195 (279)
T ss_dssp SHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHTCCCCHHHHHHHHHSC--CTTSSTTTSCS
T ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccCccchHHHHHHHhh--hhHHHHHHHHH
Confidence 0000 000111222 223456677888888887543 222222222110 00111 00001111111
Q ss_pred cCC-chHHHHHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHH
Q 038457 185 TGN-SEQIFQKAIQEQGRGQVLNTLEEIQERHDAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNVQSG 263 (308)
Q Consensus 185 ~~~-~~~~~q~~l~~~~~~q~~~~l~~i~~R~~eI~~ie~~I~EL~~lF~dla~LV~~Qge~iD~Ie~Nv~~a~~~v~~g 263 (308)
... ...... .+......+..=...|..|...+.+|..+..+-+..+.+=...++.+..+|..+...+.+|
T Consensus 196 ~~~~~~~~~~---------~i~~~~~~i~~I~~~i~ei~~~~~~ia~~v~eQ~~~~~~I~~nv~~~~~~v~~~~~el~~A 266 (279)
T 3c98_B 196 DSSISKQALS---------EIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKA 266 (279)
T ss_dssp CSSSTTHHHH---------HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC------
T ss_pred HHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 111110 1112233455556778888888899999999999988888888999999999999999999
Q ss_pred HHHHHHHHHH
Q 038457 264 TTALQNAKKH 273 (308)
Q Consensus 264 ~~~L~kA~~~ 273 (308)
...-.++++.
T Consensus 267 ~~~q~~~Rkk 276 (279)
T 3c98_B 267 VKYQSKARRK 276 (279)
T ss_dssp ----------
T ss_pred HHHHHHHhCc
Confidence 9888777654
No 47
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=46.07 E-value=81 Score=22.75 Aligned_cols=73 Identities=8% Similarity=0.199 Sum_probs=41.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--hcCChhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 038457 36 MGMEGFNKQIQEIEKQVDKLSALLKKLKDANEESK--SVTKASEMKAIKKRMEKDVDEVGKIARNVKAKIEAINR 108 (308)
Q Consensus 36 ~~~~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~--~~~~~~~~~~l~~~i~~~~~~i~~~~~~ik~~l~~l~~ 108 (308)
.+.+=|...|++....+...+..|.+++..-.... ...+|.+....=.++++.--........+...++.++.
T Consensus 5 ~P~~yF~~lv~~fe~rL~~Yr~~IeelE~~L~s~s~~~~~Tpq~L~~~l~~~h~~FiaLAa~l~~lH~~V~~~Ke 79 (93)
T 3t98_B 5 APADYFRVLVQQFEVQLQQYRQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKE 79 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566778899999999999999999987654321 12334443332233333333333334444444444444
No 48
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=45.09 E-value=2.1e+02 Score=27.30 Aligned_cols=28 Identities=7% Similarity=0.138 Sum_probs=16.8
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 038457 81 IKKRMEKDVDEVGKIARNVKAKIEAINR 108 (308)
Q Consensus 81 l~~~i~~~~~~i~~~~~~ik~~l~~l~~ 108 (308)
|+..|...-.+++..+.++++.++++++
T Consensus 51 LQglLdkqErDltkrINELKnqLEdlsK 78 (562)
T 3ghg_A 51 MKGLIDEVNQDFTNRINKLKNSLFEYQK 78 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred hhhhHHhhcCcHHHHHHHHHHHHHHHHh
Confidence 4455555555666666666666666644
No 49
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=44.49 E-value=1.3e+02 Score=24.83 Aligned_cols=62 Identities=18% Similarity=0.328 Sum_probs=33.8
Q ss_pred hHHHHHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Q 038457 189 EQIFQKAIQEQGRGQVLNTLEEIQERHDAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIES 251 (308)
Q Consensus 189 ~~~~q~~l~~~~~~q~~~~l~~i~~R~~eI~~ie~~I~EL~~lF~dla~LV~~Qge~iD~Ie~ 251 (308)
..+++. +.+.++..+..+|.+-+.=|..|..++.-|..|.++-.+|..|+..=.-|.+-|+.
T Consensus 96 e~YWk~-lAE~RR~AL~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la~vi~~ 157 (209)
T 2wvr_A 96 SQYWKE-VAEKRRKALYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIER 157 (209)
T ss_dssp TTHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344443 44445544456666666666666666666666655555555555544444444443
No 50
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=44.06 E-value=65 Score=21.05 Aligned_cols=39 Identities=28% Similarity=0.332 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHH
Q 038457 217 AVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSN 255 (308)
Q Consensus 217 eI~~ie~~I~EL~~lF~dla~LV~~Qge~iD~Ie~Nv~~ 255 (308)
.|.++...+.|+..+..+=-.-|.+.|+-||.+..--+.
T Consensus 3 ~l~~vq~~l~evk~iM~~NI~~vl~RgekLd~L~~ks~~ 41 (61)
T 3b5n_A 3 RTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADN 41 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 367888899999999998888899999999988766554
No 51
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=43.67 E-value=67 Score=22.32 Aligned_cols=39 Identities=5% Similarity=0.121 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHH
Q 038457 217 AVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSN 255 (308)
Q Consensus 217 eI~~ie~~I~EL~~lF~dla~LV~~Qge~iD~Ie~Nv~~ 255 (308)
.|.++...+.|+..++.+=-.-|.+.||-||.++.-.+.
T Consensus 16 ~l~~vq~el~ev~~iM~~NI~~vLeRGekLd~L~~kt~~ 54 (80)
T 1l4a_A 16 RLQQTQAQVEEVVDIMRVNVDKVLERDSKISELDDRADA 54 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 477788888888888888888899999999988776554
No 52
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=43.12 E-value=12 Score=26.41 Aligned_cols=29 Identities=31% Similarity=0.371 Sum_probs=16.5
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 038457 244 EILDNIESQVSNAVTNVQSGTTALQNAKK 272 (308)
Q Consensus 244 e~iD~Ie~Nv~~a~~~v~~g~~~L~kA~~ 272 (308)
.|-|.++.-++...+.+..+..-|++|.+
T Consensus 13 ~~~d~~~~~~e~~~~f~kd~~rvlk~~~K 41 (80)
T 2ww9_B 13 QSNNQVEKLVEAPVEFVREGTQFLAKCKK 41 (80)
T ss_dssp --------CCHHHHHHHHHHHHHHHSCCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 35677888888888888888888876644
No 53
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=42.39 E-value=73 Score=21.13 Aligned_cols=40 Identities=20% Similarity=0.396 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHH
Q 038457 216 DAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSN 255 (308)
Q Consensus 216 ~eI~~ie~~I~EL~~lF~dla~LV~~Qge~iD~Ie~Nv~~ 255 (308)
..|.++...+.|+..++.+=-.-|.+.|+-||.+..-.+.
T Consensus 9 d~l~~vq~~l~evk~iM~~NI~~vL~RgekLd~L~~ks~~ 48 (65)
T 1gl2_A 9 DRVRNLQSEVEGVKNIMTQNVERILARGENLDHLRNKTED 48 (65)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3477888889999999988888889999999988765544
No 54
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=41.53 E-value=2.3e+02 Score=26.60 Aligned_cols=30 Identities=13% Similarity=0.203 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038457 40 GFNKQIQEIEKQVDKLSALLKKLKDANEES 69 (308)
Q Consensus 40 ~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~ 69 (308)
.....=..+...|.+|+..|..+.+.++..
T Consensus 55 lL~kqerdv~~rI~kLkn~L~~~s~s~~~s 84 (491)
T 1m1j_A 55 IIDDTDQNYSQRIDNIRQQLADSQNKYKTS 84 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHhhcchH
Confidence 344455678888888999998888887754
No 55
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=40.84 E-value=89 Score=21.70 Aligned_cols=46 Identities=9% Similarity=0.079 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHH
Q 038457 217 AVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNVQS 262 (308)
Q Consensus 217 eI~~ie~~I~EL~~lF~dla~LV~~Qge~iD~Ie~Nv~~a~~~v~~ 262 (308)
.|..||..+.=.-+...+|+..|..|...||+...-+..-...+..
T Consensus 15 Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~ 60 (78)
T 3efg_A 15 RLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGK 60 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777777777778888888998898888887776665543
No 56
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=38.19 E-value=1.1e+02 Score=21.89 Aligned_cols=70 Identities=4% Similarity=-0.048 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc--CChhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 038457 37 GMEGFNKQIQEIEKQVDKLSALLKKLKDANEESKSV--TKASEMKAIKKRMEKDVDEVGKIARNVKAKIEAI 106 (308)
Q Consensus 37 ~~~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~--~~~~~~~~l~~~i~~~~~~i~~~~~~ik~~l~~l 106 (308)
.+...+.....+..+|..-...+..+...-...+.. ..+.+...++.+++.+...-..+...+..+-..|
T Consensus 37 ~v~~~l~~h~~l~~ei~~~~~~v~~~~~~g~~L~~~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~R~~~L 108 (119)
T 3uun_A 37 VVKDQFHTHEGYMMDLTAHQGRVGNILQLGSKLIGTGKLSEDEETEVQEQMNLLNSRWECLRVASMEKQSNL 108 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555544443321 1222333444444444444444444433333333
No 57
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=38.13 E-value=1.1e+02 Score=22.03 Aligned_cols=84 Identities=10% Similarity=0.294 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCChhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHhhccCCCCC
Q 038457 41 FNKQIQEIEKQVDKLSALLKKLKDANEESKSVTKASEMKAIKKRMEKDVDEVGKIARNVKAKIEAINRENLANRQKPGCE 120 (308)
Q Consensus 41 f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~ik~~l~~l~~~~~~~~~~~~~~ 120 (308)
|+.-.+++...|..+...+.. +. ..+++ ..+..+.....++......+...|.-+++.
T Consensus 8 F~~V~~D~~~ql~~l~~~~~~----~~---~~~~~----~~~~El~~~l~el~e~l~DL~~SI~i~e~~----------- 65 (95)
T 2c5k_T 8 FQQVVKDTKEQLNRINNYITR----HN---TAGDD----DQEEEIQDILKDVEETIVDLDRSIIVMKRD----------- 65 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----TC---CC--C----TTHHHHHHHHHHHHHHHHHHHHHHHHHHTS-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHH----cc---CCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----------
Confidence 778888888888888887554 11 11222 222334444444444445555555443321
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHH
Q 038457 121 KGTSVDRSRMNVTNALTKRFKELMTEF 147 (308)
Q Consensus 121 ~~~~~~r~r~~~~~~L~~~f~~~~~~f 147 (308)
...+..-|+..+..+.+.+..+-..+
T Consensus 66 -~~~EI~~Rk~~v~~l~~~i~~lk~~~ 91 (95)
T 2c5k_T 66 -ENEDVSGREAQVKNIKQQLDALKLRF 91 (95)
T ss_dssp -TTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12345567888888877766655544
No 58
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=36.72 E-value=88 Score=20.47 Aligned_cols=40 Identities=8% Similarity=0.128 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHH
Q 038457 216 DAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSN 255 (308)
Q Consensus 216 ~eI~~ie~~I~EL~~lF~dla~LV~~Qge~iD~Ie~Nv~~ 255 (308)
..|.++...+.|+..++.+=-.-|.+.|+-||.++.-.+.
T Consensus 4 d~l~~v~~~l~ev~~iM~~NI~~vl~RGekLd~L~~ks~~ 43 (63)
T 1n7s_A 4 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADA 43 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 3478888999999999999999999999999988766554
No 59
>2bez_C E2 glycoprotein; coiled coil, membrane fusion, severe acute respiratory syndrome, viral protein; 1.6A {Sars coronavirus} SCOP: h.3.3.1 PDB: 1zv8_A 1zvb_A
Probab=36.62 E-value=1e+02 Score=21.29 Aligned_cols=64 Identities=17% Similarity=0.429 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCChhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 038457 38 MEGFNKQIQEIEKQVDKLSALLKKLKDANEESKSVTKASEMKAIKKRMEKDVDEVGKIARNVKAKIEAI 106 (308)
Q Consensus 38 ~~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~ik~~l~~l 106 (308)
-..|......|...+......+.+++.-.+.-.. .+..+-.+|...-..|+..+..|-.+|+.+
T Consensus 11 A~sFN~A~~~i~~g~~tts~AL~kiQdVVN~q~~-----aL~~L~~qL~~NFgAISssi~dIy~RLd~l 74 (77)
T 2bez_C 11 ANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQ-----ALNTLVKQLSSNFGAISSVLNDILSRLDKV 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhhhHHHHHHHHHHHHHHhh
Confidence 3568888899999999999888888866654221 122233333333344444444454444444
No 60
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=35.47 E-value=97 Score=20.56 Aligned_cols=38 Identities=8% Similarity=0.228 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHH
Q 038457 218 VKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSN 255 (308)
Q Consensus 218 I~~ie~~I~EL~~lF~dla~LV~~Qge~iD~Ie~Nv~~ 255 (308)
|..+...+.++..++.+--.-|.+.|+-|+.++.-.+.
T Consensus 6 i~~v~~qv~ev~~iM~~ni~kvlERGekL~~L~dkT~~ 43 (63)
T 1urq_A 6 IEGVKGAASGVVGELARARLALDERGQKLSDLEERTAA 43 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677788888888888888888999988888876666
No 61
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=35.38 E-value=1.2e+02 Score=22.79 Aligned_cols=47 Identities=15% Similarity=0.261 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhcCChhhHHHHHHHHHhhHHHHHH
Q 038457 48 IEKQVDKLSALLKKLKDANEESKSVTKASEMKAIKKRMEKDVDEVGK 94 (308)
Q Consensus 48 I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~~~~~i~~ 94 (308)
.+.+|..++..++.++..........+..-...+..+++.++.+|.+
T Consensus 8 ~K~Eiq~L~drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~~ 54 (123)
T 2lf0_A 8 EKNEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIAR 54 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 35667777778877776555555555554444455555555544443
No 62
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=33.22 E-value=1.3e+02 Score=21.43 Aligned_cols=72 Identities=6% Similarity=-0.017 Sum_probs=41.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc--CChhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 038457 36 MGMEGFNKQIQEIEKQVDKLSALLKKLKDANEESKSV--TKASEMKAIKKRMEKDVDEVGKIARNVKAKIEAIN 107 (308)
Q Consensus 36 ~~~~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~--~~~~~~~~l~~~i~~~~~~i~~~~~~ik~~l~~l~ 107 (308)
..+..-+.....+..+|..-...+..+...-...... ..+.+...++.+++.+...-..+...+..+-..|+
T Consensus 36 ~~v~~~l~~h~~l~~ei~~~~~~v~~v~~~g~~L~~~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~R~~~L~ 109 (118)
T 3uul_A 36 EDVKEQFATHETFMMELSAHQSSVGSVLQAGNQLMTQGTLSDEEEFEIQEQMTLLNARWEALRVESMERQSRLH 109 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777777777777777776665554322 22333445666666555555555554444444443
No 63
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=31.49 E-value=33 Score=20.03 Aligned_cols=24 Identities=21% Similarity=0.598 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccc
Q 038457 281 MCIAIIILLIIVAVIVVGVIKPWK 304 (308)
Q Consensus 281 ~c~~i~iviii~~iii~~i~~~~~ 304 (308)
+..-.++.+++++.++..-+..|+
T Consensus 8 malt~i~gl~vif~~lg~tflywr 31 (40)
T 2l9u_A 8 MALTVIAGLVVIFMMLGGTFLYWR 31 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCceeEEEc
Confidence 344455556666666665666664
No 64
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=30.69 E-value=1.5e+02 Score=21.23 Aligned_cols=29 Identities=24% Similarity=0.257 Sum_probs=21.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038457 36 MGMEGFNKQIQEIEKQVDKLSALLKKLKD 64 (308)
Q Consensus 36 ~~~~~f~~~v~~I~~~I~~i~~~i~~L~~ 64 (308)
+-+..|.+.|..+...-..+...+..+..
T Consensus 16 dRlAsyIdKVR~LEqqN~~Le~~i~~l~~ 44 (93)
T 3s4r_A 16 DRFANLIDKVRFLEQQNKILLAELEQLKG 44 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35667888888888888888777766653
No 65
>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=29.69 E-value=1.4e+02 Score=20.69 Aligned_cols=53 Identities=11% Similarity=0.123 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 038457 218 VKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNVQSGTTALQNA 270 (308)
Q Consensus 218 I~~ie~~I~EL~~lF~dla~LV~~Qge~iD~Ie~Nv~~a~~~v~~g~~~L~kA 270 (308)
|..-..-+.|--++=.+...=...|.|.|.+....+..+..++..+.+.|..=
T Consensus 21 L~~s~r~~~ETE~iG~~il~~L~~QRE~l~~~~~~l~~~d~~l~~s~k~l~~M 73 (81)
T 2nps_C 21 LEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDANLGKSSRILTGM 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHhHHHHHHHHHHHH
Confidence 33333444444444455555567899999999999999999999999888653
No 66
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=27.72 E-value=1.6e+02 Score=21.33 Aligned_cols=52 Identities=10% Similarity=0.270 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh---hcCChhhHHHHHHHHHhhHHHHH
Q 038457 39 EGFNKQIQEIEKQVDKLSALLKKLKDANEESK---SVTKASEMKAIKKRMEKDVDEVG 93 (308)
Q Consensus 39 ~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~---~~~~~~~~~~l~~~i~~~~~~i~ 93 (308)
......+++++.+|.+-...-+-|.+++.-+. ..+++. .+..+|+.....+.
T Consensus 18 kkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~---s~~~~L~e~~~kid 72 (98)
T 2ke4_A 18 KRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPA---SLEPQIAETLSNIE 72 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGG---GSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHH---HHHHHHHHHHHHHH
Confidence 35778888888888888777666666665443 333443 23445554444333
No 67
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=27.61 E-value=1.6e+02 Score=20.70 Aligned_cols=45 Identities=22% Similarity=0.360 Sum_probs=23.5
Q ss_pred HHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038457 197 QEQGRGQVLNTLEEIQERHDAVKEIEKKLLDLQQIYMDMAVLVEA 241 (308)
Q Consensus 197 ~~~~~~q~~~~l~~i~~R~~eI~~ie~~I~EL~~lF~dla~LV~~ 241 (308)
.+.++..+..+|.+-+.=|+.|..+...|..|.+.-.+|..|-..
T Consensus 26 AE~Rr~AL~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~ 70 (83)
T 1wlq_A 26 AEQRRKALYEALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEH 70 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333443334555555555555665555555555555555555443
No 68
>2l16_A SEC-independent protein translocase protein tatad; membrane protein, protein transport; NMR {Bacillus subtilis}
Probab=27.10 E-value=32 Score=24.11 Aligned_cols=7 Identities=14% Similarity=0.220 Sum_probs=3.3
Q ss_pred HHHhccc
Q 038457 297 VGVIKPW 303 (308)
Q Consensus 297 ~~i~~~~ 303 (308)
+.+++|.
T Consensus 18 LlvfGpk 24 (78)
T 2l16_A 18 LIIFGPS 24 (78)
T ss_dssp HHHSCTT
T ss_pred hheeCcc
Confidence 3355554
No 69
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=27.06 E-value=1.2e+02 Score=18.91 Aligned_cols=26 Identities=19% Similarity=0.475 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038457 130 MNVTNALTKRFKELMTEFQTLRQRIQ 155 (308)
Q Consensus 130 ~~~~~~L~~~f~~~~~~f~~~q~~~~ 155 (308)
.+....|..+|..++.+|...|.+.+
T Consensus 11 e~~ld~LqTr~ArLlae~~ssq~KlK 36 (46)
T 3swy_A 11 GSSLDTLQTRFARLLAEYNATQMKMK 36 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566788999999999999875443
No 70
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=25.00 E-value=1.7e+02 Score=20.21 Aligned_cols=36 Identities=8% Similarity=0.214 Sum_probs=20.9
Q ss_pred CChhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 038457 73 TKASEMKAIKKRMEKDVDEVGKIARNVKAKIEAINR 108 (308)
Q Consensus 73 ~~~~~~~~l~~~i~~~~~~i~~~~~~ik~~l~~l~~ 108 (308)
++|+.....-..+.....++......++..+..|..
T Consensus 8 V~~e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~l~~ 43 (98)
T 3gwk_C 8 LTPEELRSSAQKYTAGSQQVTEVLNLLTQEQAVIDE 43 (98)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 566655555555555555666666666665555543
No 71
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=24.96 E-value=1.2e+02 Score=18.41 Aligned_cols=28 Identities=11% Similarity=0.386 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038457 40 GFNKQIQEIEKQVDKLSALLKKLKDANE 67 (308)
Q Consensus 40 ~f~~~v~~I~~~I~~i~~~i~~L~~l~~ 67 (308)
+.+..++.|..+|......|.+++...+
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKlk 33 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQQ 33 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777777765544
No 72
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=23.11 E-value=3.1e+02 Score=23.39 Aligned_cols=62 Identities=8% Similarity=0.229 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhccc
Q 038457 217 AVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQVSNAVTNVQSGTTALQNAKKHQKSSR 278 (308)
Q Consensus 217 eI~~ie~~I~EL~~lF~dla~LV~~Qge~iD~Ie~Nv~~a~~~v~~g~~~L~kA~~~qkk~r 278 (308)
+|..=+..|.+|..-..+|+.|..+=+.||..=..-|+....||+.+..++.+|...=+++.
T Consensus 211 ~i~eR~~eI~~Ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~~~~~v~~~~~~l~kA~ 272 (279)
T 2xhe_B 211 EIRDRHKDIQQLERSLLELHEMFTDMSTLVASQGEMIDRIEFSVEQSHNYVKKATEQVVQAR 272 (279)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSCSSTTCHHHHHHTCCCCC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555677888888888888888888888877777788888888888888887777655554
No 73
>2beq_A E2 glycoprotein; viral protein, coiled coil, membrane fusion, viral entry, envelope protein, signal, transmembrane, virulence; 1.6A {Sars coronavirus PUMC03} SCOP: h.3.3.1
Probab=22.38 E-value=1.3e+02 Score=17.87 Aligned_cols=30 Identities=13% Similarity=0.265 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 038457 220 EIEKKLLDLQQIYMDMAVLVEAQGEILDNI 249 (308)
Q Consensus 220 ~ie~~I~EL~~lF~dla~LV~~Qge~iD~I 249 (308)
.+.+++..++.-+..+-..|..||..+...
T Consensus 3 q~~~g~~tv~~AL~KiQ~VVN~q~~aL~~L 32 (38)
T 2beq_A 3 QIQESLTTTSTALGKLQDVVNQNAQALNTL 32 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 455666777777777777888888877654
No 74
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=22.17 E-value=1.9e+02 Score=19.67 Aligned_cols=28 Identities=11% Similarity=0.195 Sum_probs=15.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhhH
Q 038457 84 RMEKDVDEVGKIARNVKAKIEAINRENL 111 (308)
Q Consensus 84 ~i~~~~~~i~~~~~~ik~~l~~l~~~~~ 111 (308)
.|......+......|...+..|.....
T Consensus 13 ~l~~~A~~~~~~~~~i~~~l~~L~~~~~ 40 (93)
T 4ioe_A 13 ELERIAGNFKNAAGEAQSQINRLEGDIN 40 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555566666666655544
No 75
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=21.59 E-value=2e+02 Score=19.70 Aligned_cols=35 Identities=6% Similarity=0.254 Sum_probs=19.0
Q ss_pred CChhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 038457 73 TKASEMKAIKKRMEKDVDEVGKIARNVKAKIEAIN 107 (308)
Q Consensus 73 ~~~~~~~~l~~~i~~~~~~i~~~~~~ik~~l~~l~ 107 (308)
++|+.....-..+.....++......++..+..|.
T Consensus 9 v~~~~l~~~A~~~~~~~~~i~~~l~~L~~~v~~L~ 43 (99)
T 3zbh_A 9 LTPEELRGVARQYNVESSNVTELIARLDQMSHTLQ 43 (99)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45655555555555555555555555555555543
No 76
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=21.27 E-value=4.7e+02 Score=23.82 Aligned_cols=28 Identities=4% Similarity=0.112 Sum_probs=14.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 038457 81 IKKRMEKDVDEVGKIARNVKAKIEAINR 108 (308)
Q Consensus 81 l~~~i~~~~~~i~~~~~~ik~~l~~l~~ 108 (308)
|+.-|+.....++..+..+++.|..+.+
T Consensus 54 Lqg~Ldk~er~~~~rIe~L~~~L~~~s~ 81 (390)
T 1deq_A 54 MKGLIDEVDQDFTSRINKLRDSLFNYQK 81 (390)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 4444444444555555555555555444
No 77
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=21.05 E-value=2.1e+02 Score=19.67 Aligned_cols=26 Identities=19% Similarity=0.600 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038457 130 MNVTNALTKRFKELMTEFQTLRQRIQ 155 (308)
Q Consensus 130 ~~~~~~L~~~f~~~~~~f~~~q~~~~ 155 (308)
.+.+..|..+|..++.+|...|.+.+
T Consensus 13 E~sld~LQTrfARLLaEy~ssQ~KLK 38 (74)
T 3swf_A 13 ESSVDLLQTRFARILAEYESMQQKLK 38 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567888999999999999876544
No 78
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=20.52 E-value=1.6e+02 Score=18.03 Aligned_cols=28 Identities=21% Similarity=0.368 Sum_probs=19.3
Q ss_pred hhHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 038457 206 NTLEEIQERHDA----VKEIEKKLLDLQQIYM 233 (308)
Q Consensus 206 ~~l~~i~~R~~e----I~~ie~~I~EL~~lF~ 233 (308)
+...++.+|+++ |-.||..+..|..-|.
T Consensus 9 dlvsel~~r~e~LE~Ri~~LE~KLd~L~~~l~ 40 (43)
T 2pnv_A 9 DMISDLNERSEDFEKRIVTLETKLETLIGSIH 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677755 6678888888877765
Done!