BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038458
(347 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9UTN3|CID14_SCHPO Poly(A) RNA polymerase cid14 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cid14 PE=1 SV=2
Length = 684
Score = 55.5 bits (132), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 97/219 (44%), Gaps = 40/219 (18%)
Query: 22 IARIQPDPFSEERRNAVAAYVRRLIIQCFP-CQVFTFGSVPLKTYLPDRDIDLGAFSDDQ 80
I I P P R + + + + ++Q +P ++ FGS K YLP D+DL S +
Sbjct: 249 IDYITPTPEEHAVRKTLVSRINQAVLQKWPDVSLYVFGSFETKLYLPTSDLDLVIISPEH 308
Query: 81 ----TLKDTW--AHLVRDMLENEEKNEHAEFRVKEVQYI-QAEVKIIKCLVDNFV---VD 130
T KD + AH ++ + EVQ I A V IIK VD VD
Sbjct: 309 HYRGTKKDMFVLAHHLKKLK-----------LASEVQVITTANVPIIK-FVDPLTKVHVD 356
Query: 131 IAFNQLGGLCTLCFLDEVDHLINENHLFKRSIILIKAWCYYESR---ILGGHHGLISSYA 187
I+FNQ GGL T C + V+ + + + +I+IK + + LGG +SSYA
Sbjct: 357 ISFNQPGGLKT-CLV--VNGFMKKYPALRPLVIIIKHFLNMRALNEVFLGG----LSSYA 409
Query: 188 LVTLVLYIFHVFNGSFAGPLE-------VLYRFLEFFSK 219
+V LV+ + G + +L FLE + K
Sbjct: 410 IVCLVVSFLQLHPRLSTGSMREEDNFGVLLLEFLELYGK 448
>sp|G5EFL0|GLD4_CAEEL Poly(A) RNA polymerase gld-4 OS=Caenorhabditis elegans GN=gld-4
PE=1 SV=1
Length = 845
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 80/320 (25%), Positives = 132/320 (41%), Gaps = 73/320 (22%)
Query: 11 WLKAEEITAELIARIQPDPFSEERRNAVAAYVRRLIIQCFPCQVFTFGSVPLKTYLPDRD 70
W+K EI + L ++ F + R + + + ++ I ++ FGS+ +LP D
Sbjct: 90 WIKPNEIESRLRTKV----FEKVRDSVLRRWKQKTI------KISMFGSLRTNLFLPTSD 139
Query: 71 IDLGAFSDDQTLKDTWAHLVRDMLENEEKNEHAEFRVKEVQ-YIQAEVKIIKCLVD---N 126
ID+ DD W D L + A+ + V Y A V I+K +VD
Sbjct: 140 IDVLVECDD------WVGTPGDWLAETARGLEADNIAESVMVYGGAFVPIVK-MVDRDTR 192
Query: 127 FVVDIAFNQLGGLCTLCFLDEVDHLINENHLFKRSIILIKAWCYYESRILGGHHGLISSY 186
+DI+FN + G+ ++ +V E L + ++L+K + +Y + + G +SSY
Sbjct: 193 LSIDISFNTVQGVRAASYIAKVKE---EFPLIEPLVLLLKQFLHYRN-LNQTFTGGLSSY 248
Query: 187 ALVTLVLYIFHVF-----------NGSFAGPLEVLYRFLEFFS-KFDWDNFCLSLWGPVP 234
LV L++ F ++ G G L L RFLE +S +F+++ +S
Sbjct: 249 GLVLLLVNFFQLYALNMRSRTIYDRGVNLGHL--LLRFLELYSLEFNFEEMGIS------ 300
Query: 235 ISLLPDVTAEPPRKDGGVLLLSKSFLDSCRYAYADFPGGQENQGQPFVSKHFNVIDPLRV 294
G + KS RY + Q QP + + DPL
Sbjct: 301 --------------PGQCCYIPKS-ASGARYGHK--------QAQP---GNLALEDPLLT 334
Query: 295 NNNLGRSVSKGNFFRIRTAF 314
N++GRS NF I AF
Sbjct: 335 ANDVGRSTY--NFSSIANAF 352
>sp|P53632|PAP2_YEAST Poly(A) RNA polymerase protein 2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=PAP2 PE=1 SV=1
Length = 584
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/247 (23%), Positives = 94/247 (38%), Gaps = 44/247 (17%)
Query: 11 WLKAEEITAELIARIQPDPFSEERRNAVAAYVRRLIIQCFP-CQVFTFGSVPLKTYLPDR 69
WL E + +A I P E RN + +R + Q +P + FGS YLP
Sbjct: 178 WLTFE--IKDFVAYISPSREEIEIRNQTISTIREAVKQLWPDADLHVFGSYSTDLYLPGS 235
Query: 70 DID------LGAFSDDQTLKDTWAHLVRDMLENEEKNEHAEFRVKEVQYI-QAEVKIIKC 122
DID LG L +HL + L EV+ + +A V IIK
Sbjct: 236 DIDCVVTSELGGKESRNNLYSLASHLKKKNL------------ATEVEVVAKARVPIIKF 283
Query: 123 LV--DNFVVDIAFNQLGGLCTLC----FLDEVDHLINENHLFKRSIILIKAWCYYESRIL 176
+ +D++F + G+ +LD+ L R ++LI + R+
Sbjct: 284 VEPHSGIHIDVSFERTNGIEAAKLIREWLDDTPGL--------RELVLIVKQFLHARRLN 335
Query: 177 GGHHGLISSYALVTLVLYIFHVFNGSFAGPLE-------VLYRFLEFFSK-FDWDNFCLS 228
H G + ++++ LV H+ ++ +L F E + K F +D+ L
Sbjct: 336 NVHTGGLGGFSIICLVFSFLHMHPRIITNEIDPKDNLGVLLIEFFELYGKNFGYDDVALG 395
Query: 229 LWGPVPI 235
P+
Sbjct: 396 SSDGYPV 402
>sp|O13833|CID1_SCHPO Poly(A) RNA polymerase protein cid1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=cid1 PE=1 SV=2
Length = 405
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 82/350 (23%), Positives = 129/350 (36%), Gaps = 65/350 (18%)
Query: 24 RIQPDPFSEERRNAVAAYVRRLIIQCFP-CQVFTFGSVPLKTYLPDRDIDLGAFSDDQTL 82
+I F E+R A +R + + P ++ FGS+ L + D+DL D +
Sbjct: 56 KISDKEFKEKR--AALDTLRLCLKRISPDAELVAFGSLESGLALKNSDMDLCVLMDSRVQ 113
Query: 83 KDTWAHLVRDMLENEEKNEHAEFRVKEVQYIQAEVKIIKCLVD-------NFVVDIAFNQ 135
DT A + L E F K +Q +A + IIK D +F DI FN
Sbjct: 114 SDTIALQFYEELIAEG------FEGKFLQ--RARIPIIKLTSDTKNGFGASFQCDIGFNN 165
Query: 136 LGGLCTLCFLDEVDHLINENHLFKRSIILIKAWCYYESRILGGHHGLISSYALVTLVL-Y 194
+ L L + K ++L+K W +I + G +SSY V +VL Y
Sbjct: 166 RLAIHNTLLLSSYTKL---DARLKPMVLLVKHWAK-RKQINSPYFGTLSSYGYVLMVLYY 221
Query: 195 IFH-----VFNGSFAGPLEVLYRFLEFFSKFDWDNFCLSLWGPVPISLLPDVTAEPPRKD 249
+ H VF PL+ F FD L D+
Sbjct: 222 LIHVIKPPVFPNLLLSPLKQEKIVDGFDVGFD--------------DKLEDIPPSQNYSS 267
Query: 250 GGVLL------LSKSFLDSCRYAYADFPGG---QENQGQPFVSKH-------------FN 287
G LL + F + P G ++ +G ++H
Sbjct: 268 LGSLLHGFFRFYAYKFEPREKVVTFRRPDGYLTKQEKGWTSATEHTGSADQIIKDRYILA 327
Query: 288 VIDPLRVNNNLGRSVSKGNFFRIRTAFTFRAKGL-ARLLDCPNEDLYNEV 336
+ DP +++N+GR+VS +RIR F ++ L +R P + L+ E
Sbjct: 328 IEDPFEISHNVGRTVSSSGLYRIRGEFMAASRLLNSRSYPIPYDSLFEEA 377
>sp|O42617|PAP_CANAL Poly(A) polymerase PAPalpha OS=Candida albicans (strain SC5314 /
ATCC MYA-2876) GN=PAPALPHA PE=3 SV=1
Length = 558
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/189 (21%), Positives = 74/189 (39%), Gaps = 22/189 (11%)
Query: 53 QVFTFGSVPLKTYLPDRDIDLGAFSDDQTLKDTWAHLVRDMLENEEKNEHA--------- 103
+VFTFGS L Y P DID +D + + D++ + E
Sbjct: 82 KVFTFGSYRLGVYGPGSDIDTLVVVPKHVTRDDFFSVFADIIRKRPELEEIACVPDAYVP 141
Query: 104 ----EFRVKEVQYIQAEVKIIKCLVD------NFVVDIAFNQLGGLCTLCFLDEVDHLIN 153
EF + I A + I + +D N + ++ L L DE+ L+
Sbjct: 142 IIKLEFDGISIDLIMARLNIPRVPLDLTLDDKNLLKNLDEKDLRSLNGTRVTDEILQLVP 201
Query: 154 ENHLFKRSIILIKAWCYYESRILGGHHGLISSYALVTLVLYIFHVFNGSFAGPLEVLYRF 213
+ +FK ++ IK W + + G G A LV I ++ + + ++ +F
Sbjct: 202 KPTVFKHALRCIKLWAQQRA-VYGNIFGFPGGVAWAMLVARICQLYPNAVSSA--IVEKF 258
Query: 214 LEFFSKFDW 222
++K++W
Sbjct: 259 FNIYTKWNW 267
>sp|Q68ED3|PAPD5_MOUSE PAP-associated domain-containing protein 5 OS=Mus musculus GN=Papd5
PE=2 SV=2
Length = 633
Score = 40.8 bits (94), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 60/130 (46%), Gaps = 15/130 (11%)
Query: 15 EEITAELIARIQPDPFSEERRNAVAAYVRRLIIQCFP-CQVFTFGSVPLKTYLPDRDIDL 73
EEI+ + + P P E+ R V + + +I + +P V FGS YLP DIDL
Sbjct: 136 EEIS-DFYEYMSPRPEEEKMRMEVVSRIESVIKELWPSADVQIFGSFKTGLYLPTSDIDL 194
Query: 74 GAFSDDQTLKDTWAHLVRDMLENEEKNEHAEFRVKEVQYI-QAEVKIIKCLVDNFV---V 129
F W +L LE E +H V+ + +A V IIK L D+F V
Sbjct: 195 VVFGK-------WENLPLWTLE-EALRKHKVADEDSVKVLDKATVPIIK-LTDSFTEVKV 245
Query: 130 DIAFNQLGGL 139
DI+FN G+
Sbjct: 246 DISFNVQNGV 255
>sp|Q8NDF8|PAPD5_HUMAN PAP-associated domain-containing protein 5 OS=Homo sapiens GN=PAPD5
PE=1 SV=2
Length = 572
Score = 40.0 bits (92), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 59/130 (45%), Gaps = 15/130 (11%)
Query: 15 EEITAELIARIQPDPFSEERRNAVAAYVRRLIIQCFP-CQVFTFGSVPLKTYLPDRDIDL 73
EEI+ + + P P E+ R V + +I + +P V FGS YLP DIDL
Sbjct: 122 EEIS-DFYEYMSPRPEEEKMRMEVVNRIESVIKELWPSADVQIFGSFKTGLYLPTSDIDL 180
Query: 74 GAFSDDQTLKDTWAHLVRDMLENEEKNEHAEFRVKEVQYI-QAEVKIIKCLVDNFV---V 129
F W +L LE E +H V+ + +A V IIK L D+F V
Sbjct: 181 VVFG-------KWENLPLWTLE-EALRKHKVADEDSVKVLDKATVPIIK-LTDSFTEVKV 231
Query: 130 DIAFNQLGGL 139
DI+FN G+
Sbjct: 232 DISFNVQNGV 241
>sp|Q9WVP6|PAPOB_MOUSE Poly(A) polymerase beta OS=Mus musculus GN=Papolb PE=1 SV=2
Length = 641
Score = 38.9 bits (89), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 66/263 (25%), Positives = 109/263 (41%), Gaps = 64/263 (24%)
Query: 16 EITAELIARIQP-DPFSEE----RR--------NAVAAYVRRL---------IIQCFPCQ 53
E+T +LI +QP F EE RR N V ++R + +I+ +
Sbjct: 37 ELTQKLIETLQPFGVFEEEEELQRRILILQKLNNLVKEWIREISESRNLPQAVIENVGGK 96
Query: 54 VFTFGSVPLKTYLPDRDIDLGAFSDDQTLKDTWAHLVRDMLENEEKNEHAEFRVKEVQYI 113
+FTFGS L + DID + ++ + D L+ +E+ VK+++ +
Sbjct: 97 IFTFGSYRLGVHTKGADIDALCVAPRHVDRNDFFTSFYDKLKLQEE-------VKDLRAV 149
Query: 114 -QAEVKIIKCLVDNFVVDIAFNQLG-----------------GLCTLCF--------LDE 147
+A V +IK D +DI F +L L C DE
Sbjct: 150 EEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIRCIRSLNGCRVTDE 209
Query: 148 VDHLINENHLFKRSIILIKAW--CY-YESRILGGHHGLISSYALVTLVLYIFHVFNGSFA 204
+ HL+ F+ ++ IK W C+ S ILG G+ S+A+ LV ++ + A
Sbjct: 210 ILHLVPNIDSFRLTLRAIKLWAKCHNIYSNILGFLGGV--SWAM--LVARTCQLYPNAIA 265
Query: 205 GPLEVLYRFLEFFSKFDWDNFCL 227
L + +F FS+++W N L
Sbjct: 266 STL--VRKFFLVFSEWEWPNPVL 286
>sp|P48561|TRF5_YEAST Poly(A) RNA polymerase protein 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TRF5 PE=1 SV=2
Length = 642
Score = 37.0 bits (84), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 52/235 (22%), Positives = 98/235 (41%), Gaps = 32/235 (13%)
Query: 11 WLKAEEITAELIARIQPDPFSEERRNAVAAYVRRLIIQCFP-CQVFTFGSVPLKTYLPDR 69
WL +E + + I P + RN +RR + + + + FGS YLP
Sbjct: 175 WLTSE--IKDFVHYISPSKNEIKCRNRTIDKLRRAVKELWSDADLHVFGSFATDLYLPGS 232
Query: 70 DID--LGAFSDDQTLKDTWAHLVRDMLENEEKNEHAEFRVKEVQYIQAEVKIIKCL--VD 125
DID + + + D+ ++ L R + KN+ R++ + ++ V IIK +
Sbjct: 233 DIDCVVNSRNRDKEDRNYIYELARHL-----KNKGLAIRMEVI--VKTRVPIIKFIEPQS 285
Query: 126 NFVVDIAFNQLGGLCTLCFLDEVDHLINE---NHLFKRSIILIKAWCYYESRILGGHHGL 182
+D++F + GL E LI E + R ++LI + R+ H G
Sbjct: 286 QLHIDVSFERTNGL-------EAAKLIREWLRDSPGLRELVLIIKQFLHSRRLNNVHTGG 338
Query: 183 ISSYALVTLVLYIFHVFNGSFAGPLEV-------LYRFLEFFSK-FDWDNFCLSL 229
+ + ++ LV ++ + ++V L F E + K F +D+ +S+
Sbjct: 339 LGGFTVICLVYSFLNMHPRIKSNDIDVLDNLGVLLIDFFELYGKNFGYDDVAISI 393
>sp|Q9VYS4|GLD2B_DROME Poly(A) RNA polymerase gld-2 homolog B OS=Drosophila melanogaster
GN=wisp PE=1 SV=1
Length = 1373
Score = 37.0 bits (84), Expect = 0.22, Method: Composition-based stats.
Identities = 58/259 (22%), Positives = 97/259 (37%), Gaps = 75/259 (28%)
Query: 108 KEVQYIQAEVKII--KCLVDNFVVDIAFNQLGGLCTLCFLDEVDHLINENHLFKRSIILI 165
++ I+A V I+ K + + VD+ FN G+ L + + + ++++
Sbjct: 1079 QDFNLIEARVPILRFKDISNGIEVDLNFNNCVGIKNTYLLQLYAQM---DWRTRPLVVIV 1135
Query: 166 KAWCYYESRILGGHHGLISSYALVTLVL-YIFHV------------------------FN 200
K W Y I ISSY+LV +VL Y+ H +
Sbjct: 1136 KLWAQYHD-INDAKRMTISSYSLVLMVLHYLQHACVPHVLPCLHSLYPEKFQLGQQDCLD 1194
Query: 201 GSFAGPLEV------------LYRFLEFFSKFDWDNFCLSLWGPVPISLLPDVTAEPPRK 248
P+E L F +++S FD+ NF +S+ +
Sbjct: 1195 LDLIEPIEPYQALNTQTLGEHLLGFFKYYSTFDFRNFAISI------------------R 1236
Query: 249 DGGVLLLSKSFLDSCRYAYADFPGGQENQGQPFVSKHFNVIDPLRVNNNLGRSVSKG-NF 307
GGVL +S +CR A + + + K N+ +P ++N RSV G F
Sbjct: 1237 TGGVLPVS-----TCRMA-------KSPKNDVYQWKELNIEEPFDLSNT-ARSVYDGPTF 1283
Query: 308 FRIRTAFTFRAKGLARLLD 326
R++ F A+ L LD
Sbjct: 1284 ERVKAVFLISARRLDHTLD 1302
>sp|Q9UW26|PAPA_CANAL Poly(A) polymerase PAPa OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=PAPA PE=3 SV=1
Length = 555
Score = 36.6 bits (83), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 40/189 (21%), Positives = 73/189 (38%), Gaps = 22/189 (11%)
Query: 53 QVFTFGSVPLKTYLPDRDIDLGAFSDDQTLKDTWAHLVRDMLENEEKNEH---------- 102
++FTFGS L Y P DID ++ + + ++L+ + E
Sbjct: 82 KIFTFGSYRLGVYGPGSDIDTLVVVPKHVSRNDFFEVFYELLKGRSELEEIAPVPDAFVP 141
Query: 103 ---AEFRVKEVQYIQAEVKIIKCLVD------NFVVDIAFNQLGGLCTLCFLDEVDHLIN 153
EF + I A + I + D N + +I L L DE+ L+
Sbjct: 142 IIKIEFAGISIDLIFARLDIPRVPRDLTLDDKNLLKNIDEKDLRALNGTRVTDEILQLVP 201
Query: 154 ENHLFKRSIILIKAWCYYESRILGGHHGLISSYALVTLVLYIFHVFNGSFAGPLEVLYRF 213
+ +FK ++ IK W + + G G A LV I ++ + + ++ +F
Sbjct: 202 KPTVFKHALRCIKMWAQQRA-VYGNIFGFPGGVAWAMLVARICQLYPNAVSAV--IVEKF 258
Query: 214 LEFFSKFDW 222
+S++ W
Sbjct: 259 FHIYSQWAW 267
>sp|Q9BWT3|PAPOG_HUMAN Poly(A) polymerase gamma OS=Homo sapiens GN=PAPOLG PE=1 SV=2
Length = 736
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 40/208 (19%), Positives = 79/208 (37%), Gaps = 36/208 (17%)
Query: 46 IIQCFPCQVFTFGSVPLKTYLPDRDIDLGAFSDDQTLKDTWAHLVRDMLENEEKNEHAEF 105
++ ++FTFGS L + DID + + + + L++++
Sbjct: 88 VVATVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVERSDFFQSFFEKLKHQDG------ 141
Query: 106 RVKEVQYIQ-AEVKIIKCLVDNFVVDIAFNQLG-----------------GLCTLCF--- 144
++ ++ ++ A V +IK D +D+ F +L L C
Sbjct: 142 -IRNLRAVEDAFVPVIKFEFDGIEIDLVFARLAIQTISDNLDLRDDSRLRSLDIRCIRSL 200
Query: 145 -----LDEVDHLINENHLFKRSIILIKAWCYYESRILGGHHGLISSYALVTLVLYIFHVF 199
DE+ HL+ F+ ++ +K W I G + + LV ++
Sbjct: 201 NGCRVTDEILHLVPNKETFRLTLRAVKLWAKRRG-IYSNMLGFLGGVSWAMLVARTCQLY 259
Query: 200 NGSFAGPLEVLYRFLEFFSKFDWDNFCL 227
+ A L +++F FSK++W N L
Sbjct: 260 PNAAASTL--VHKFFLVFSKWEWPNPVL 285
>sp|Q6PCL9|PAPOG_MOUSE Poly(A) polymerase gamma OS=Mus musculus GN=Papolg PE=1 SV=1
Length = 739
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 40/208 (19%), Positives = 79/208 (37%), Gaps = 36/208 (17%)
Query: 46 IIQCFPCQVFTFGSVPLKTYLPDRDIDLGAFSDDQTLKDTWAHLVRDMLENEEKNEHAEF 105
++ ++FTFGS L + DID + + + + L++++
Sbjct: 88 VVATVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVERSDFFQSFFEKLKHQDG------ 141
Query: 106 RVKEVQYIQ-AEVKIIKCLVDNFVVDIAFNQLG-----------------GLCTLCF--- 144
++ ++ ++ A V +IK D +D+ F +L L C
Sbjct: 142 -IRNLRAVEDAFVPVIKFEFDGIEIDLVFARLAIQTISDNLDLRDDSRLRSLDIRCIRSL 200
Query: 145 -----LDEVDHLINENHLFKRSIILIKAWCYYESRILGGHHGLISSYALVTLVLYIFHVF 199
DE+ HL+ F+ ++ +K W I G + + LV ++
Sbjct: 201 NGCRVTDEILHLVPNKETFRLTLRAVKLWAKRRG-IYSNMLGFLGGVSWAMLVARTCQLY 259
Query: 200 NGSFAGPLEVLYRFLEFFSKFDWDNFCL 227
+ A L +++F FSK++W N L
Sbjct: 260 PNAAASTL--VHKFFLVFSKWEWPNPVL 285
>sp|A8HVS4|HTPG_AZOC5 Chaperone protein HtpG OS=Azorhizobium caulinodans (strain ATCC
43989 / DSM 5975 / ORS 571) GN=htpG PE=3 SV=1
Length = 635
Score = 33.5 bits (75), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 232 PVPISLLPDVTAEPPRKDGGVLLLSKSFLDSCRYAYADFPGGQENQ-GQPFVSKHFNV 288
PVPI ++ + AEP GV L +KS D YADF Q QP ++ HF
Sbjct: 212 PVPIYIVEKLDAEPEEIADGVALWTKSKSDISAEDYADFYRSVAGQFDQPALTVHFRA 269
>sp|Q10295|PAP_SCHPO Poly(A) polymerase pla1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=pla1 PE=2 SV=1
Length = 566
Score = 33.5 bits (75), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 52/251 (20%), Positives = 90/251 (35%), Gaps = 56/251 (22%)
Query: 15 EEITAELIARIQPDPFSEERRNAVAAYVRRLIIQCFPCQVFTFGSVPLKTYLPDRDIDLG 74
++IT E + ++ ++A ++ + ++FT+GS L Y P DID
Sbjct: 55 QQITTEFVKKV-----------SLAKHMNEKMANEAGGKIFTYGSYRLGVYGPGSDIDTL 103
Query: 75 AFSDDQTLKDTWAHLVRDML-ENEEKNEHAEFRVKEVQYIQAEVKIIKCLVDNFVVDIAF 133
+D + + ML E EE + A A V IIK +D+ F
Sbjct: 104 VVVPKHVSRDNFFQDLEPMLREREEVTDLAAVP-------DAYVPIIKFKFLGISIDLIF 156
Query: 134 -----------------NQLGGLCTLCFL--------DEVDHLINENHLFKRSIILIKAW 168
N L G+ C L D++ L+ +FK ++ IK W
Sbjct: 157 ARLSVPRVPRDLELSDNNLLKGVEERCVLSLNGTRVTDQILQLVPNRAVFKHALRAIKFW 216
Query: 169 CYYESRILGGHHGLISSYALVTLVLYIFHVFNGSFAGPLEVLYRFLEFFSKFDWDNFCLS 228
+ I G A +V I ++ + + ++ +F +++W
Sbjct: 217 AQRRA-IYANVVGFPGGVAWAMMVARICQLYPNAVSS--VIVAKFFRILHQWNW------ 267
Query: 229 LWGPVPISLLP 239
P PI L P
Sbjct: 268 ---PQPILLKP 275
>sp|O74518|CID12_SCHPO Poly(A) RNA polymerase cid12 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cid12 PE=1 SV=1
Length = 336
Score = 33.1 bits (74), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 63/292 (21%), Positives = 117/292 (40%), Gaps = 61/292 (20%)
Query: 38 VAAYVRRLIIQCFPCQVFTFGSVPLKTYLPDRDIDLGAFSD--DQTLKDTWAHLVRDMLE 95
+ ++R +++ ++ +GS+ + T L D+D+ S + K ++R L
Sbjct: 48 LQTHIREVVLDA---ELQVYGSMYIGTTLSISDVDVSLKSPRVGELEKRRVTMVLRKYL- 103
Query: 96 NEEKNEHAEFRVKEVQYIQAEVKIIKCLVDNFVVDIAFNQLGGLCTLCFLDEVDHLINEN 155
+ + + H+ RV + + V VD+ F G C E+ NE
Sbjct: 104 DADADFHSSARVPRINLVD---------VSGIGVDLTF----GNDKACRTAELQKAYNEE 150
Query: 156 H-LFKRSIILIKAWCYYESRILGGHHGLIS----SYALVTLVLYIFHVFN-GSFAGPLEV 209
H +F R ++L+K W + E + HHG I+ SY L+ + FH S P+
Sbjct: 151 HPIFGRLLMLLKHWLF-ERDLENVHHGGIASCALSYMLIGWLEMRFHKKGIDSEVQPIRA 209
Query: 210 LYRFLEFFSKFDWDNFCLSLWGPVPISLLPDVTAEPPRKDGGVLLLSKSFLDSCRYAYAD 269
L + +F +W + L + P+ ++P L K +L
Sbjct: 210 LLQKFFYFWGVEW-TYELFVLRPLTGQIVPK--------------LQKGWL--------- 245
Query: 270 FPGGQENQGQPFVSKHFNVIDPLRVNNNLGRSVSKGNFFRIRTAFTFRAKGL 321
N+ QP + ++ DP+ NN++G+ + + I+ AF A L
Sbjct: 246 ------NEVQPNL---LSIEDPIDRNNDIGKQSFQISM--IKAAFVASANEL 286
>sp|P46834|GNTK_BACLI Gluconokinase OS=Bacillus licheniformis GN=gntK PE=3 SV=1
Length = 513
Score = 33.1 bits (74), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 23/46 (50%)
Query: 100 NEHAEFRVKEVQYIQAEVKIIKCLVDNFVVDIAFNQLGGLCTLCFL 145
NEH E VK +YI + I K L D +VVD + G+ L L
Sbjct: 142 NEHPEIAVKAKKYIGIKEYIFKKLFDQYVVDYSLASAMGMMNLKTL 187
>sp|Q6PB75|PAPD7_MOUSE DNA polymerase sigma OS=Mus musculus GN=Papd7 PE=2 SV=1
Length = 542
Score = 32.7 bits (73), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 69/182 (37%), Gaps = 24/182 (13%)
Query: 25 IQPDPFSEERRNAVAAYVRRLIIQCFP-CQVFTFGSVPLKTYLPDRDIDLGAFSDDQTLK 83
+ P P R V + ++ +P V FGS YLP DIDL F
Sbjct: 1 MSPCPEEAAMRREVVKRIETVVKDLWPTADVQIFGSFSTGLYLPTSDIDLVVFGK----- 55
Query: 84 DTWAHLVRDMLENEEKNEHAEFRVKEVQYIQAEVKIIKCLVDN---FVVDIAFNQLGGLC 140
W +LE + + +A V IIK L D VDI+FN G+
Sbjct: 56 --WERPPLQLLEQALRKHNVAEPCSIKVLDKATVPIIK-LTDQETEVKVDISFNMETGVR 112
Query: 141 TLCFLDEVDHLINENHLFKRS----IILIKAWCYYESRILGGHHGLISSYALVTLVLYIF 196
F+ +N++ K S +IL+ + + G ISSY+L+ + +
Sbjct: 113 AAEFI--------KNYMKKYSLLPYLILVLKQFLLQRDLNEVFTGGISSYSLILMAISFL 164
Query: 197 HV 198
+
Sbjct: 165 QL 166
>sp|Q5XG87|PAPD7_HUMAN DNA polymerase sigma OS=Homo sapiens GN=PAPD7 PE=1 SV=2
Length = 542
Score = 32.7 bits (73), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 68/177 (38%), Gaps = 24/177 (13%)
Query: 25 IQPDPFSEERRNAVAAYVRRLIIQCFP-CQVFTFGSVPLKTYLPDRDIDLGAFSDDQTLK 83
+ P P R V + ++ +P V FGS YLP DIDL F
Sbjct: 1 MSPCPEEAAMRREVVKRIETVVKDLWPTADVQIFGSFSTGLYLPTSDIDLVVFGK----- 55
Query: 84 DTWAHLVRDMLENEEKNEHAEFRVKEVQYIQAEVKIIKCLVDN---FVVDIAFNQLGGLC 140
W +LE + + +A V IIK L D VDI+FN G+
Sbjct: 56 --WERPPLQLLEQALRKHNVAEPCSIKVLDKATVPIIK-LTDQETEVKVDISFNMETGVR 112
Query: 141 TLCFLDEVDHLINENHLFKRS----IILIKAWCYYESRILGGHHGLISSYALVTLVL 193
F+ +N++ K S +IL+ + + G ISSY+L+ + +
Sbjct: 113 AAEFI--------KNYMKKYSLLPYLILVLKQFLLQRDLNEVFTGGISSYSLILMAI 161
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.143 0.449
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 134,405,416
Number of Sequences: 539616
Number of extensions: 5793180
Number of successful extensions: 16196
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 16178
Number of HSP's gapped (non-prelim): 28
length of query: 347
length of database: 191,569,459
effective HSP length: 118
effective length of query: 229
effective length of database: 127,894,771
effective search space: 29287902559
effective search space used: 29287902559
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (28.5 bits)