Query 038458
Match_columns 347
No_of_seqs 188 out of 966
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 11:16:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038458.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038458hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5260 TRF4 DNA polymerase si 100.0 1.7E-46 3.6E-51 363.4 24.1 269 8-325 51-344 (482)
2 KOG1906 DNA polymerase sigma [ 100.0 8.8E-44 1.9E-48 352.1 24.8 270 12-325 61-343 (514)
3 PTZ00418 Poly(A) polymerase; P 100.0 5.1E-35 1.1E-39 293.1 28.3 286 1-325 53-390 (593)
4 KOG2245 Poly(A) polymerase and 100.0 2.3E-31 5.1E-36 257.4 26.7 283 1-326 16-348 (562)
5 KOG2277 S-M checkpoint control 99.9 6.2E-27 1.3E-31 242.2 19.6 262 14-324 114-431 (596)
6 COG5186 PAP1 Poly(A) polymeras 99.9 2.5E-24 5.5E-29 201.4 22.9 296 1-341 8-356 (552)
7 cd05402 NT_PAP_TUTase Nucleoti 99.9 6.2E-24 1.3E-28 173.8 11.8 107 34-147 1-112 (114)
8 PF04928 PAP_central: Poly(A) 99.9 2.1E-22 4.5E-27 186.0 10.8 227 1-326 5-242 (254)
9 PRK13300 tRNA CCA-pyrophosphor 99.7 1.3E-14 2.9E-19 143.4 22.5 169 18-195 3-189 (447)
10 TIGR03671 cca_archaeal CCA-add 99.7 9.7E-15 2.1E-19 142.3 21.1 233 18-318 2-252 (408)
11 COG1746 CCA1 tRNA nucleotidylt 99.5 1.5E-11 3.2E-16 118.9 22.4 171 13-195 2-191 (443)
12 PF03828 PAP_assoc: Cid1 famil 99.1 1.9E-11 4.1E-16 88.4 1.5 28 206-233 2-30 (60)
13 PF01909 NTP_transf_2: Nucleot 98.3 3.4E-07 7.3E-12 71.4 2.9 42 39-80 1-43 (93)
14 cd05397 NT_Pol-beta-like Nucle 98.3 1E-06 2.2E-11 61.0 4.7 40 37-76 2-42 (49)
15 cd05400 NT_2-5OAS_ClassI-CCAas 97.9 8.4E-05 1.8E-09 62.8 10.1 94 32-134 6-111 (143)
16 PF10421 OAS1_C: 2'-5'-oligoad 97.8 6.3E-05 1.4E-09 66.4 7.8 61 137-199 22-85 (190)
17 cd05403 NT_KNTase_like Nucleot 97.8 2.9E-05 6.2E-10 60.0 4.6 43 38-80 3-47 (93)
18 PF03813 Nrap: Nrap protein; 97.6 0.00049 1.1E-08 75.6 12.2 137 147-324 155-300 (972)
19 PF09249 tRNA_NucTransf2: tRNA 97.5 0.0002 4.4E-09 57.7 5.9 29 284-312 70-98 (114)
20 COG1669 Predicted nucleotidylt 97.5 0.0002 4.3E-09 56.4 5.4 46 35-80 7-53 (97)
21 smart00572 DZF domain in DSRM 97.5 0.0057 1.2E-07 56.3 15.7 200 53-322 4-230 (246)
22 PRK13746 aminoglycoside resist 97.0 0.0022 4.9E-08 59.9 7.1 42 39-80 13-57 (262)
23 COG1708 Predicted nucleotidylt 96.9 0.0017 3.7E-08 52.9 5.3 31 48-78 22-53 (128)
24 KOG3793 Transcription factor N 96.8 0.037 7.9E-07 51.2 13.5 209 7-227 34-274 (362)
25 KOG2054 Nucleolar RNA-associat 96.7 0.013 2.9E-07 62.7 11.0 145 147-332 299-444 (1121)
26 PRK02098 phosphoribosyl-dephos 95.2 0.047 1E-06 49.8 6.2 41 38-79 108-154 (221)
27 TIGR03135 malonate_mdcG holo-A 95.0 0.06 1.3E-06 48.5 6.2 41 38-79 96-142 (202)
28 PF14091 DUF4269: Domain of un 94.5 0.85 1.8E-05 39.1 11.5 105 52-166 16-125 (152)
29 PF07528 DZF: DZF domain; Int 93.5 2.1 4.5E-05 39.8 13.1 153 57-218 2-186 (248)
30 PF03813 Nrap: Nrap protein; 92.4 3.3 7.2E-05 46.0 15.0 145 148-322 675-824 (972)
31 PF14792 DNA_pol_B_palm: DNA p 91.6 0.36 7.8E-06 39.2 4.9 60 37-97 9-73 (112)
32 PF10127 Nuc-transf: Predicted 84.5 0.81 1.8E-05 42.3 2.9 45 35-79 2-48 (247)
33 cd05401 NT_GlnE_GlnD_like Nucl 84.4 4.3 9.4E-05 35.0 7.3 28 52-79 56-83 (172)
34 PF10620 MdcG: Phosphoribosyl- 83.5 1.7 3.6E-05 39.5 4.4 43 37-80 103-151 (213)
35 KOG2534 DNA polymerase IV (fam 79.2 6.8 0.00015 37.5 6.9 60 37-97 156-217 (353)
36 PRK01293 phosphoribosyl-dephos 78.1 5.3 0.00011 36.1 5.7 41 38-79 97-143 (207)
37 COG1665 Predicted nucleotidylt 77.9 5.4 0.00012 37.4 5.7 29 50-78 119-148 (315)
38 PF03445 DUF294: Putative nucl 77.3 9.4 0.0002 32.0 6.7 28 52-79 50-77 (138)
39 PRK00227 glnD PII uridylyl-tra 77.2 7.8 0.00017 41.4 7.5 48 32-79 5-55 (693)
40 PHA02603 nrdC.11 hypothetical 75.6 1.6 3.5E-05 42.1 1.7 25 54-78 6-30 (330)
41 cd00141 NT_POLXc Nucleotidyltr 75.0 46 0.001 31.8 11.6 57 38-96 146-203 (307)
42 COG3541 Predicted nucleotidylt 67.4 2.8 6.2E-05 38.6 1.3 25 55-79 14-38 (248)
43 KOG2054 Nucleolar RNA-associat 66.1 11 0.00024 41.3 5.6 71 149-225 812-885 (1121)
44 PF09970 DUF2204: Nucleotidyl 64.9 19 0.00042 31.6 6.1 80 51-141 16-99 (181)
45 COG2844 GlnD UTP:GlnB (protein 64.2 30 0.00065 37.4 8.2 29 52-80 67-95 (867)
46 PRK01759 glnD PII uridylyl-tra 62.2 30 0.00065 38.0 8.2 28 52-79 57-84 (854)
47 COG2413 Predicted nucleotidylt 60.1 15 0.00034 32.9 4.5 44 34-79 22-65 (228)
48 PRK00275 glnD PII uridylyl-tra 56.1 51 0.0011 36.5 8.7 28 52-79 79-106 (895)
49 PRK05007 PII uridylyl-transfer 55.9 51 0.0011 36.4 8.7 28 52-79 81-108 (884)
50 TIGR01693 UTase_glnD [Protein- 53.7 59 0.0013 35.7 8.7 28 52-79 44-71 (850)
51 PRK04374 PII uridylyl-transfer 53.4 59 0.0013 35.9 8.6 28 52-79 73-100 (869)
52 smart00483 POLXc DNA polymeras 52.8 46 0.001 32.3 7.0 43 37-80 149-192 (334)
53 PRK03059 PII uridylyl-transfer 47.1 1.3E+02 0.0027 33.3 9.9 28 52-79 62-89 (856)
54 cd05398 NT_ClassII-CCAase Nucl 42.3 1.5E+02 0.0032 24.7 7.7 69 50-134 15-85 (139)
55 COG1796 POL4 DNA polymerase IV 40.0 1.9E+02 0.0042 27.9 8.7 89 38-141 166-256 (326)
56 PF12633 Adenyl_cycl_N: Adenyl 38.6 55 0.0012 29.5 4.6 28 52-79 98-125 (204)
57 PRK03381 PII uridylyl-transfer 33.3 1.1E+02 0.0025 33.2 6.9 28 52-79 58-85 (774)
58 PF03296 Pox_polyA_pol: Poxvir 32.8 42 0.00091 28.3 2.7 79 11-95 5-92 (149)
59 PHA02996 poly(A) polymerase la 29.8 44 0.00096 33.1 2.7 113 6-134 117-243 (467)
60 PRK14109 bifunctional glutamin 27.4 76 0.0016 35.7 4.4 28 52-79 724-751 (1007)
61 PF03281 Mab-21: Mab-21 protei 24.1 3E+02 0.0065 25.6 7.3 57 155-215 190-250 (292)
62 PF03710 GlnE: Glutamate-ammon 23.8 72 0.0016 29.4 2.9 29 52-80 128-156 (247)
63 PRK05092 PII uridylyl-transfer 23.5 1E+02 0.0023 34.2 4.6 28 52-79 106-133 (931)
64 smart00545 JmjN Small domain f 21.4 1.2E+02 0.0026 20.0 2.8 31 25-56 5-36 (42)
65 PF02601 Exonuc_VII_L: Exonucl 20.7 1.1E+02 0.0023 29.2 3.5 47 38-84 27-89 (319)
66 PRK00286 xseA exodeoxyribonucl 20.7 1.4E+02 0.0031 29.8 4.6 48 37-84 147-206 (438)
67 PF02375 JmjN: jmjN domain; I 20.6 92 0.002 19.6 2.0 31 25-56 3-34 (34)
No 1
>COG5260 TRF4 DNA polymerase sigma [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.7e-46 Score=363.44 Aligned_cols=269 Identities=25% Similarity=0.360 Sum_probs=217.1
Q ss_pred CchhhhHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHchhCC-ceEEEecccccCCCCCCCCcceeeecCCCcchhhH
Q 038458 8 PGRWLKAEEITAELIARIQPDPFSEERRNAVAAYVRRLIIQCFP-CQVFTFGSVPLKTYLPDRDIDLGAFSDDQTLKDTW 86 (347)
Q Consensus 8 ~~~~~~l~~~i~~f~~~l~Pt~~e~~~R~~vi~~l~~~i~~~~p-~~v~~fGS~~tgl~lp~SDiDl~v~~~~~~~~~~~ 86 (347)
.+.-.-+..++.+|+++|.|+.+|.+.|..++++|+.++++.|| +.+++|||+.|||++|.||||+||..++...+++.
T Consensus 51 ~~~~~~lt~el~~~y~~I~ps~eEl~~R~~~leklr~~lk~~~pda~l~vFGS~~t~L~l~~SDiDl~I~s~~~~~~et~ 130 (482)
T COG5260 51 NEESDELTSELLEFYDYIAPSDEELKRRKALLEKLRTLLKKEFPDADLKVFGSTETGLALPKSDIDLCIISDPRGYKETR 130 (482)
T ss_pred hhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHhCCccceeEecccccccccCcccccEEEecCCccccccc
Confidence 44455678889999999999999999999999999999999999 99999999999999999999999999764333322
Q ss_pred H--HHHHHHHhhccccccccceeeeEEEe-eecceEEEEee--cCeeEEEeecCCCccchhhhHHHHHHHhccChhhHHH
Q 038458 87 A--HLVRDMLENEEKNEHAEFRVKEVQYI-QAEVKIIKCLV--DNFVVDIAFNQLGGLCTLCFLDEVDHLINENHLFKRS 161 (347)
Q Consensus 87 ~--~~l~~~L~~~~~~~~~~~~~~~v~~I-~ArVPIIK~~~--~~i~vDIs~n~~~g~~~s~~l~~i~~~~~~~p~~r~L 161 (347)
- ..+..++.+. ....+.++ +|||||||+++ +|++|||+|||..|+.|+.++ ..|+..+|++|||
T Consensus 131 ~~~~l~~~l~~~~--------~~~~~~~v~tarVPIIKl~d~~s~l~~Disfn~~~~~~~akl~---~~~~~~~P~lrpL 199 (482)
T COG5260 131 NAGSLASHLFKKN--------LAKEVVVVSTARVPIIKLVDPQSGLHCDISFNNTNGIVNAKLI---RSYLKEDPRLRPL 199 (482)
T ss_pred cHHHHHHHHHHhc--------cCeeeEEEEecccceEEEecCccceEEEeecCchhHHHHHHHH---HHHHhcCcccchH
Confidence 1 2233333332 34466778 99999999997 899999999999999997776 7889999999999
Q ss_pred HHHHHHHHHHhhcccC-CCCCCCcHHHHHHHHHHHHHhCcCC------C----------CChHHHHHHHHhccc-cCCCC
Q 038458 162 IILIKAWCYYESRILG-GHHGLISSYALVTLVLYIFHVFNGS------F----------AGPLEVLYRFLEFFS-KFDWD 223 (347)
Q Consensus 162 ~~~lK~Wa~~~~r~ln-~~~GglsSYal~lMvi~fLQ~~~~~------~----------~~p~~lL~~Ff~~Y~-~Fd~~ 223 (347)
+++||||+ ++|.+| ++.|||+||++++||+.|||.+++. . .+.|-||.+||+||| .|+|+
T Consensus 200 vliIKhwl--~~R~ln~~~~GtL~sy~i~cmV~sfLq~~~~~~~~~~~~~~~l~~~~~~~~lgvLf~dFf~~yG~~f~Y~ 277 (482)
T COG5260 200 VLIIKHWL--KRRALNDVATGTLSSYTISCMVLSFLQMHPPFLFFDNGLLSPLKYNKNIDNLGVLFDDFFELYGKSFNYS 277 (482)
T ss_pred HHHHHHHH--HHHhhcccccCcchhhhhHHHHHHHHHhCCccccccccccchhhccccccccchHHHHHHHHhccccChh
Confidence 99999998 677776 6999999999999999999999731 1 333678999999999 99999
Q ss_pred CeeEEeeCCcccCCCCCccCCCCCCCCCcccccHhHHHHHHhhcCCCCCCCCCCCCCccCcceEEeCCC-CCCCCccccc
Q 038458 224 NFCLSLWGPVPISLLPDVTAEPPRKDGGVLLLSKSFLDSCRYAYADFPGGQENQGQPFVSKHFNVIDPL-RVNNNLGRSV 302 (347)
Q Consensus 224 ~~~isi~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~IeDPf-~~~~N~~rsv 302 (347)
..+++++++ . .+++|. . +| +-.+..+..+|||||+ ++++++++.
T Consensus 278 ~~~~si~~g-~------------------~~~~K~-------e-----~g---~~~~~~p~~LsiqdP~td~n~~~~a~- 322 (482)
T COG5260 278 LVVLSINSG-D------------------FYLPKY-------E-----KG---WLKPSKPNSLSIQDPGTDRNNDISAV- 322 (482)
T ss_pred heEEEecCC-c------------------eeeehh-------h-----cc---cccccCCCcEeecCCCCCcccccccc-
Confidence 999999764 1 111110 0 00 1111112579999999 898888886
Q ss_pred CcchHHHHHHHHHHHHHHHHHHh
Q 038458 303 SKGNFFRIRTAFTFRAKGLARLL 325 (347)
Q Consensus 303 ~~~~~~~I~~~F~~a~~~l~~~~ 325 (347)
..++..|+.+|.+|.++|..-+
T Consensus 323 -s~~ik~i~~~F~~aF~lls~~~ 344 (482)
T COG5260 323 -SFNIKDIKAAFIRAFELLSNKL 344 (482)
T ss_pred -cchHHHHHHHHHHHHHHHhhhc
Confidence 4578999999999999988665
No 2
>KOG1906 consensus DNA polymerase sigma [Replication, recombination and repair]
Probab=100.00 E-value=8.8e-44 Score=352.10 Aligned_cols=270 Identities=30% Similarity=0.449 Sum_probs=216.6
Q ss_pred hhHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHchhCC-ceEEEecccccCCCCCCCCcceeeecCCCcchhhHHHHH
Q 038458 12 LKAEEITAELIARIQPDPFSEERRNAVAAYVRRLIIQCFP-CQVFTFGSVPLKTYLPDRDIDLGAFSDDQTLKDTWAHLV 90 (347)
Q Consensus 12 ~~l~~~i~~f~~~l~Pt~~e~~~R~~vi~~l~~~i~~~~p-~~v~~fGS~~tgl~lp~SDiDl~v~~~~~~~~~~~~~~l 90 (347)
..+.++|.+|+++|.||++|.+.|..++++++..|+..|| |.|++|||+.|||+||+|||||++..+....++.....+
T Consensus 61 ~~l~~eI~~fv~~l~pt~~e~~~R~~~~~~i~~~v~~~~~~a~v~~FGS~~tglyLP~sDIDl~v~~~~~~~~e~~~~~~ 140 (514)
T KOG1906|consen 61 ERLRNEILDFVQYLIPTPEEIEVRSELVEKIRDVVKQKWPDASVYVFGSVPTGLYLPDSDIDLVVLSKFLNDKEDRAVKL 140 (514)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhcccceeEEeeeeeccccccccceEEEEecccccCchhhHHHH
Confidence 4578899999999999999999999999999999999999 999999999999999999999999999655566555555
Q ss_pred HHHHhhccccccccceeeeEEEe-eecceEEEEee--cCeeEEEeecCCCccchhhhHHHHHHHhccChhhHHHHHHHHH
Q 038458 91 RDMLENEEKNEHAEFRVKEVQYI-QAEVKIIKCLV--DNFVVDIAFNQLGGLCTLCFLDEVDHLINENHLFKRSIILIKA 167 (347)
Q Consensus 91 ~~~L~~~~~~~~~~~~~~~v~~I-~ArVPIIK~~~--~~i~vDIs~n~~~g~~~s~~l~~i~~~~~~~p~~r~L~~~lK~ 167 (347)
..++.... .. ....|.++ .||||||||++ +||.||||||+.+|++++.++ ..++..+|.+++|++++|+
T Consensus 141 ~l~~~~e~--~~---~~~~v~~v~karvpiik~~d~~s~i~vDISFn~~~G~~aa~~i---~~~~~~~p~~~~lvlvlk~ 212 (514)
T KOG1906|consen 141 ELALELEE--DN---SAFHVKVVQKARVPIIKFKDPVSNIHVDISFNQTNGVKAAKFI---KDFLRDHPFLRSLVLVLKQ 212 (514)
T ss_pred HHHHhhhh--cc---ccceEEEeeeeeeeeEEeecCccceEEEeeecccCchhHHHHH---HHHHhcCccchhHHHHHHH
Confidence 44444321 11 12356778 99999999996 999999999999999998777 6778899999999999998
Q ss_pred HHHHhhcccC-CCCCCCcHHHHHHHHHHHHHhCcCCCCCh-------HHHHHHHHhccc-cCCCCCeeEEeeCCcccCCC
Q 038458 168 WCYYESRILG-GHHGLISSYALVTLVLYIFHVFNGSFAGP-------LEVLYRFLEFFS-KFDWDNFCLSLWGPVPISLL 238 (347)
Q Consensus 168 Wa~~~~r~ln-~~~GglsSYal~lMvi~fLQ~~~~~~~~p-------~~lL~~Ff~~Y~-~Fd~~~~~isi~~~~~~~~~ 238 (347)
|. ..|.+| +++||+|||++++|+++|||.++....++ +-||.+||++|| +|+|++.+|++..+..
T Consensus 213 fl--~~r~ln~v~tGgisSyal~~Lv~~fl~l~~~~~s~~~~~~~~~~vll~~f~e~yG~~f~~~k~~i~~~~~g~---- 286 (514)
T KOG1906|consen 213 FL--YERRLNGVHTGGISSYALELLVLSFLQLHPRSKSGRLAVLKNLGVLLIKFFELYGRNFGYDKLGISLSLGGE---- 286 (514)
T ss_pred HH--HhhcccccccccchHHHHHHHHHHHHhhcccccCCccchhcccchHHHHHHHHhccccCchhhceeccCCcc----
Confidence 84 455555 79999999999999999999998654333 458999999999 9999999998754321
Q ss_pred CCccCCCCCCCCCcccccHhHHHHHHhhcCCCCCCCCCCCCCccCcceEEeCCCCCCCCcccccCcchHHHHHHHHHHHH
Q 038458 239 PDVTAEPPRKDGGVLLLSKSFLDSCRYAYADFPGGQENQGQPFVSKHFNVIDPLRVNNNLGRSVSKGNFFRIRTAFTFRA 318 (347)
Q Consensus 239 ~~~~~~~p~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~IeDPf~~~~N~~rsv~~~~~~~I~~~F~~a~ 318 (347)
. +.++-. ++ ..++.. ....++||||.+|.||+||+- .++..|+.+|..|+
T Consensus 287 --------------~-~~~~~~-----~~-------~~~~~~-~~~~LsieDP~~P~ndigr~s--~~~~~v~~~F~~af 336 (514)
T KOG1906|consen 287 --------------Y-VSKELT-----GF-------FNNSLE-RPGSLSIEDPVDPTNDIGRSS--FNFSQVKGAFAYAF 336 (514)
T ss_pred --------------c-ccHHhh-----hh-------hccccc-CCCccccCCCCCccccccccc--ccHHHHHHHHHHHH
Confidence 1 111100 00 001001 124589999999999999984 67899999999999
Q ss_pred HHHHHHh
Q 038458 319 KGLARLL 325 (347)
Q Consensus 319 ~~l~~~~ 325 (347)
..|..-.
T Consensus 337 ~~l~~~~ 343 (514)
T KOG1906|consen 337 KVLTNAV 343 (514)
T ss_pred HHHhhhh
Confidence 9987443
No 3
>PTZ00418 Poly(A) polymerase; Provisional
Probab=100.00 E-value=5.1e-35 Score=293.07 Aligned_cols=286 Identities=18% Similarity=0.293 Sum_probs=223.8
Q ss_pred CCCCCCCCchhhhHH----HHHHHHHHH--hCCChHHHHHHHHHHHHHHHHHchh---------C--------CceEEEe
Q 038458 1 SVIRPLDPGRWLKAE----EITAELIAR--IQPDPFSEERRNAVAAYVRRLIIQC---------F--------PCQVFTF 57 (347)
Q Consensus 1 ~~~~~~~~~~~~~l~----~~i~~f~~~--l~Pt~~e~~~R~~vi~~l~~~i~~~---------~--------p~~v~~f 57 (347)
||+.||+-+....-| .++.+++.. +-|++||.+.|+.+++.|++++++. . +++|++|
T Consensus 53 Gvt~Pis~~~Pt~~d~~~s~~L~~~L~~~~~fes~ee~~kR~~vL~~L~~iv~~wv~~vs~~k~~~~~~~~~~~g~I~tf 132 (593)
T PTZ00418 53 GVTDPISLNGPTEEDLKLSNELINLLKSYNLYETEEGKKKRERVLGSLNKLVREFVVEASIEQGINEEEASQISGKLFTF 132 (593)
T ss_pred CCCCCccCCCCChHHHhhhHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHhcCCeEEEEe
Confidence 789999987775543 444455543 5689999999999999999999763 1 2899999
Q ss_pred cccccCCCCCCCCcceeeecCCCcchhhHHHHHHHHHhhccccccccceeeeEEEe-eecceEEEEeecCeeEEEeecCC
Q 038458 58 GSVPLKTYLPDRDIDLGAFSDDQTLKDTWAHLVRDMLENEEKNEHAEFRVKEVQYI-QAEVKIIKCLVDNFVVDIAFNQL 136 (347)
Q Consensus 58 GS~~tgl~lp~SDiDl~v~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~I-~ArVPIIK~~~~~i~vDIs~n~~ 136 (347)
||+..|.+.|+||||+++++|....++.|+..+.++|++.. .+++++.+ .|+||||||...||+||+.|...
T Consensus 133 GSYrLGV~~pgSDID~L~V~P~~vtredFF~~f~~~L~~~~-------~V~eL~~V~~A~VPiIk~~~~GI~iDL~fa~l 205 (593)
T PTZ00418 133 GSYRLGVVAPGSDIDTLCLAPRHITRESFFSDFYAKLQQDP-------NITKLQPVPDAYTPVIKFVYDGIDIDLLFANL 205 (593)
T ss_pred ccccccCCCCCCcccEEEECCCCCCHHHHHHHHHHHHhcCC-------CcceeeccCccccCeEEEEECCEEEeeeeccc
Confidence 99999999999999999999987778899999999998754 57888888 99999999999999999999622
Q ss_pred Cc---------c-----------------chhhhHHHHHHHhccChhhHHHHHHHHHHHHHhhcccC-CCCCCCcHHHHH
Q 038458 137 GG---------L-----------------CTLCFLDEVDHLINENHLFKRSIILIKAWCYYESRILG-GHHGLISSYALV 189 (347)
Q Consensus 137 ~g---------~-----------------~~s~~l~~i~~~~~~~p~~r~L~~~lK~Wa~~~~r~ln-~~~GglsSYal~ 189 (347)
.. + +..+..++|.+.+.....||.++++||.|| ++|++- +..|++|+-+|+
T Consensus 206 ~~~~vp~~~~~l~d~~lL~nlde~s~rSLNG~Rvtd~Il~lVPn~~~Fr~aLR~IKlWA--krRGIYsNv~GflGGV~wA 283 (593)
T PTZ00418 206 PLPTIPDCLNSLDDDYILRNVDEKTVRSLNGCRVADLILASVPNKDYFRTTLRFIKLWA--KRRGIYSNVLGYLGGVSWA 283 (593)
T ss_pred CCCCCCccccccCchhhhhcCCHHHhhhhccHHHHHHHHHHCCChHHHHHHHHHHHHHH--HHhccccccccccchHHHH
Confidence 10 0 112334456677888889999999999999 888886 599999999999
Q ss_pred HHHHHHHHhCcCCCCChHHHHHHHHhccccCCCCCeeEEeeCCcccCCCCCccCCCCCCCCCcccccHhHHHHHHhhc-C
Q 038458 190 TLVLYIFHVFNGSFAGPLEVLYRFLEFFSKFDWDNFCLSLWGPVPISLLPDVTAEPPRKDGGVLLLSKSFLDSCRYAY-A 268 (347)
Q Consensus 190 lMvi~fLQ~~~~~~~~p~~lL~~Ff~~Y~~Fd~~~~~isi~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~~~~~~~~~-~ 268 (347)
+||+..||.+|+ .+|..|+..||.+|++|+|.+ |+.+....+. |+ ..|.+ .+ .
T Consensus 284 ILvARVCQLyPn--a~~s~Lv~~FF~iys~W~Wp~-------PV~L~~i~~~----~~-~~g~~------------~~~V 337 (593)
T PTZ00418 284 ILTARICQLYPN--FAPSQLIHKFFRVYSIWNWKN-------PVLLCKIKEV----PN-IPGLM------------NFKV 337 (593)
T ss_pred HHHHHHHHhCCC--CCHHHHHHHHHHHhhcCCCCC-------CeEccccccc----cc-CCccc------------CCcc
Confidence 999999999986 578899999999999999977 3333221110 00 00100 00 1
Q ss_pred CCCCCCCCCCCCccCcceEEeCCCCCCCCcccccCcchHHHHHHHHHHHHHHHHHHh
Q 038458 269 DFPGGQENQGQPFVSKHFNVIDPLRVNNNLGRSVSKGNFFRIRTAFTFRAKGLARLL 325 (347)
Q Consensus 269 ~~~~~~~~~~~~~~~~~l~IeDPf~~~~N~~rsv~~~~~~~I~~~F~~a~~~l~~~~ 325 (347)
|.++. ........|.|..|..|..|.+++|+..+++.|++||++|++++..+.
T Consensus 338 WdPr~----~~~dr~h~MPIITPayP~mNst~nVt~sT~~vI~~Ef~Ra~~i~~~i~ 390 (593)
T PTZ00418 338 WDPRV----NPQDRAHLMPIITPAFPSMNSTHNVTYTTKRVITEEFKRAHEIIKYIE 390 (593)
T ss_pred cCCCC----CcccccccCCeecCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 11110 011123569999999999999999999999999999999999999875
No 4
>KOG2245 consensus Poly(A) polymerase and related nucleotidyltransferases [RNA processing and modification]
Probab=100.00 E-value=2.3e-31 Score=257.37 Aligned_cols=283 Identities=23% Similarity=0.333 Sum_probs=222.3
Q ss_pred CCCCCCCCchhhhHHHHHH-HHHHHh-----CCChHHHHHHHHHHHHHHHHHchh---------CC--------ceEEEe
Q 038458 1 SVIRPLDPGRWLKAEEITA-ELIARI-----QPDPFSEERRNAVAAYVRRLIIQC---------FP--------CQVFTF 57 (347)
Q Consensus 1 ~~~~~~~~~~~~~l~~~i~-~f~~~l-----~Pt~~e~~~R~~vi~~l~~~i~~~---------~p--------~~v~~f 57 (347)
||+.|||-+.-..-|-.+. ++.+.+ -+++||...|..|+..|+.+++++ .| +++.+|
T Consensus 16 Gvt~PiS~a~p~~~d~~lt~~L~~~L~~~g~fEs~eEt~~R~~VL~~L~~iVk~wVk~vs~~k~~p~~~~~~aggkIftf 95 (562)
T KOG2245|consen 16 GVTQPISTAGPTEADIALTQELIKTLKNEGLFESKEETQRREEVLGKLNQIVKEWVKKVSEQKGLPDGMIENAGGKIFTF 95 (562)
T ss_pred cccCCcccCCCcHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCceEEec
Confidence 7899999888877654443 444444 458899999999999999998765 22 899999
Q ss_pred cccccCCCCCCCCcceeeecCCCcchhhHHHHHHHHHhhccccccccceeeeEEEe-eecceEEEEeecCeeEEEeecCC
Q 038458 58 GSVPLKTYLPDRDIDLGAFSDDQTLKDTWAHLVRDMLENEEKNEHAEFRVKEVQYI-QAEVKIIKCLVDNFVVDIAFNQL 136 (347)
Q Consensus 58 GS~~tgl~lp~SDiDl~v~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~I-~ArVPIIK~~~~~i~vDIs~n~~ 136 (347)
|||..|.+.|+||||-.++.|....++.|+..+.++|+... .++++..+ .|.||||||..+||++|+-|..+
T Consensus 96 GSYRLGVhg~GADIDtLcV~Prhv~R~DFF~sf~~mL~~~~-------eVteL~~V~dAfVPiikfKf~GI~IDllfArL 168 (562)
T KOG2245|consen 96 GSYRLGVHGPGADIDTLCVGPRHVSRSDFFTSFYDMLKERP-------EVTELHAVEDAFVPIIKFKFDGIEIDLLFARL 168 (562)
T ss_pred cceeecccCCCCCcceeeeccccccHHHHHHHHHHHHhcCc-------cccccccccccccceEEEEecCeeeeeeehhc
Confidence 99999999999999999999998888999999999999765 68888888 99999999999999999998654
Q ss_pred C--------ccchhhhH-----------------HHHHHHhccChhhHHHHHHHHHHHHHhhcccC-CCCCCCcHHHHHH
Q 038458 137 G--------GLCTLCFL-----------------DEVDHLINENHLFKRSIILIKAWCYYESRILG-GHHGLISSYALVT 190 (347)
Q Consensus 137 ~--------g~~~s~~l-----------------~~i~~~~~~~p~~r~L~~~lK~Wa~~~~r~ln-~~~GglsSYal~l 190 (347)
. .+.+..++ +.|-+++.....|+..+.+||.|| |+|+.- ...|.+|+-+|++
T Consensus 169 ~l~~VP~dldl~ddslLknlDe~~vrSLNGcRVtdqiL~LVPn~~~F~~tLRaiKlWA--KrrgVYsN~~GF~GGV~wA~ 246 (562)
T KOG2245|consen 169 ALPVVPEDLDLSDDSLLKNLDERCVRSLNGCRVTDQILKLVPNQENFRITLRAIKLWA--KRRGVYSNVMGFLGGVAWAM 246 (562)
T ss_pred ccccCCCcccccchHhhhcccHHHHHHhcCcCHHHHHHHhCCCHHHHHHHHHHHHHHH--HhcccccccccccchHHHHH
Confidence 2 12222222 233345666678899999999999 788874 6899999999999
Q ss_pred HHHHHHHhCcCCCCChHHHHHHHHhccccCCCCCeeEEeeCCcccCCCCCccCCCCCCCCCcccccHhHHHHHHhhcCCC
Q 038458 191 LVLYIFHVFNGSFAGPLEVLYRFLEFFSKFDWDNFCLSLWGPVPISLLPDVTAEPPRKDGGVLLLSKSFLDSCRYAYADF 270 (347)
Q Consensus 191 Mvi~fLQ~~~~~~~~p~~lL~~Ff~~Y~~Fd~~~~~isi~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~~~~~~~~~~~~ 270 (347)
||+..||.+|+. .|..|+..||..|++|+|-+-++ +..+.+ +++ +.-.|+
T Consensus 247 LVARiCQLYPNA--~~s~Lv~kfF~ifs~W~WP~PVl-------L~~ie~----------~~L-----------~~~VWd 296 (562)
T KOG2245|consen 247 LVARICQLYPNA--SPSTLVAKFFRVFSQWNWPNPVL-------LKPIEE----------GNL-----------NLPVWD 296 (562)
T ss_pred HHHHHHccCCCc--chHHHHHHHHHHHhhccCCCceE-------eccccc----------ccc-----------CccccC
Confidence 999999999864 57789999999999999977443 222111 111 000111
Q ss_pred CCCCCCCCCCccCcceEEeCCCCCCCCcccccCcchHHHHHHHHHHHHHHHHHHhc
Q 038458 271 PGGQENQGQPFVSKHFNVIDPLRVNNNLGRSVSKGNFFRIRTAFTFRAKGLARLLD 326 (347)
Q Consensus 271 ~~~~~~~~~~~~~~~l~IeDPf~~~~N~~rsv~~~~~~~I~~~F~~a~~~l~~~~~ 326 (347)
|+. + .......|.|+.|..|..|.+.+|+++|+..|.+||.+|+.++.++..
T Consensus 297 Pr~--n--~~DryHlMPIITPAyP~~nsthNVS~ST~~Vi~~Ef~~g~~I~~~i~~ 348 (562)
T KOG2245|consen 297 PRV--N--PSDRYHLMPIITPAYPQMNSTHNVSRSTLKVITEEFKRGLEICDDIEL 348 (562)
T ss_pred CCC--C--CCCcceecccccCCcccccccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 110 0 111123699999999999999999999999999999999999999984
No 5
>KOG2277 consensus S-M checkpoint control protein CID1 and related nucleotidyltransferases [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=6.2e-27 Score=242.15 Aligned_cols=262 Identities=21% Similarity=0.280 Sum_probs=211.3
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHchhCC---ceEEEecccccCCCCCCCCcceeeecCCCcc------hh
Q 038458 14 AEEITAELIARIQPDPFSEERRNAVAAYVRRLIIQCFP---CQVFTFGSVPLKTYLPDRDIDLGAFSDDQTL------KD 84 (347)
Q Consensus 14 l~~~i~~f~~~l~Pt~~e~~~R~~vi~~l~~~i~~~~p---~~v~~fGS~~tgl~lp~SDiDl~v~~~~~~~------~~ 84 (347)
++..+..+++...+...+...|......++..+...+| ..+..|||+.+|+....+|+|+++....... ..
T Consensus 114 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~gs~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~ 193 (596)
T KOG2277|consen 114 LDPQLNELLESFKLPHSDVKTRKLILDKLRALASLLFPDSILSLYLFGSSDLGLGERSSDLDLCVDFTSSFLSFEKIKGL 193 (596)
T ss_pred hchhhhhhhhccCCCccccchHHHHHHHHHHHHHHhcCCCcceeeccCcccccccccccCcceeecccccccccchhhhH
Confidence 78889999999999999999999999999999999998 3456999999999999999998777765311 12
Q ss_pred hHHHHHHHHHhhccccccccceeeeEEEe-eecceEEEEee--cCeeEEEeecCCCccchhhhHHHHHHHhccChhhHHH
Q 038458 85 TWAHLVRDMLENEEKNEHAEFRVKEVQYI-QAEVKIIKCLV--DNFVVDIAFNQLGGLCTLCFLDEVDHLINENHLFKRS 161 (347)
Q Consensus 85 ~~~~~l~~~L~~~~~~~~~~~~~~~v~~I-~ArVPIIK~~~--~~i~vDIs~n~~~g~~~s~~l~~i~~~~~~~p~~r~L 161 (347)
.....+.+++.... .+- +..++.+ .|||||||+.+ .+++||++++|..++.||.++ ..+...||++++|
T Consensus 194 ~~~~l~~~~~~~~~----~~~-~~~~~~i~~A~vPiik~~~~~~~~~~d~s~~n~~~~~nS~ll---~~~~~~d~r~~~L 265 (596)
T KOG2277|consen 194 EILKLLAKCLASLL----EEG-VREVQQILSARVPIIKFNDSGSGLECDLSVNNSDAILNSQLL---RNYSEIDPRVRPL 265 (596)
T ss_pred HHHHHHHHHHHhcc----ccc-cceeeeeeecCCCEEEecCCCCCCceeeeeccchhhhhhHHH---HHhHhcCCCcchH
Confidence 33445555555432 111 4455556 99999999976 789999999999999999988 5566789999999
Q ss_pred HHHHHHHHHHhhcccC-CCCCCCc-HHHHHHHHHHHHHhCcCCC------------------------------------
Q 038458 162 IILIKAWCYYESRILG-GHHGLIS-SYALVTLVLYIFHVFNGSF------------------------------------ 203 (347)
Q Consensus 162 ~~~lK~Wa~~~~r~ln-~~~Ggls-SYal~lMvi~fLQ~~~~~~------------------------------------ 203 (347)
++.+|+|| +.+++| +..|+++ ||++++||++|||+.++.+
T Consensus 266 ~~~vk~wa--~~~~~~d~~~g~~~s~ysl~lmvi~fLq~~~~~ilp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (596)
T KOG2277|consen 266 VLLVKHWA--KEKGLNDAKPGGLNSSYSLTLMVIHFLQTLSPPILPPLSKLLPESDSNDKPVVKKKVLCSFLRVFQRNPS 343 (596)
T ss_pred hHHHHHHH--HhccCCCCCCCceeccccHHHHHHHHHHhcCCcCCCchhhhchhcccccccchhhhhhhccccccccccc
Confidence 99999998 778887 6999998 6999999999999874210
Q ss_pred -----CChHHHHHHHHhccc-cCCCCCeeEEeeCCcccCCCCCccCCCCCCCCCcccccHhHHHHHHhhcCCCCCCCCCC
Q 038458 204 -----AGPLEVLYRFLEFFS-KFDWDNFCLSLWGPVPISLLPDVTAEPPRKDGGVLLLSKSFLDSCRYAYADFPGGQENQ 277 (347)
Q Consensus 204 -----~~p~~lL~~Ff~~Y~-~Fd~~~~~isi~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (347)
.+.+.|+.+||.||+ .|||.+.+|+++.+..... .
T Consensus 344 ~~~~~~~l~~l~~~f~~yy~~~Fdf~~~~I~~r~~~~l~~---------------------------------------~ 384 (596)
T KOG2277|consen 344 NSQNTGSLGELLLGFFSYYASLFDFRKNAISIRRGRALKR---------------------------------------A 384 (596)
T ss_pred cccccchHHHHHHHHHHHHhhhcccccceeeeeecccccc---------------------------------------c
Confidence 011478899999999 9999999999976432210 0
Q ss_pred CCCccCcceEEeCCCCCCCCcccccCcchHHHHHHHHHHHHHHHHHH
Q 038458 278 GQPFVSKHFNVIDPLRVNNNLGRSVSKGNFFRIRTAFTFRAKGLARL 324 (347)
Q Consensus 278 ~~~~~~~~l~IeDPf~~~~N~~rsv~~~~~~~I~~~F~~a~~~l~~~ 324 (347)
...+..+.++|+|||+..+|.+.+++......|+.+|+.+...|...
T Consensus 385 ~~~~~~~~l~i~dp~~~~~n~~~~~~~~~~~~i~~~~~~~~~~~~~~ 431 (596)
T KOG2277|consen 385 KKIKSKKFLCIEDPFEVSHNADAGVTLKVLLLIQDEFQESRRVFKDV 431 (596)
T ss_pred chhhhccceeeccccccccCccccchHHHHHHHHHHHHHHHHHhhhh
Confidence 12223467999999999999999999989999999999999999877
No 6
>COG5186 PAP1 Poly(A) polymerase [RNA processing and modification]
Probab=99.93 E-value=2.5e-24 Score=201.42 Aligned_cols=296 Identities=22% Similarity=0.307 Sum_probs=213.8
Q ss_pred CCCCCCCCchhhhHHHHHH-HHHHHhC-----CChHHHHHHHHHHHHHHHHHchhC---------------C--ceEEEe
Q 038458 1 SVIRPLDPGRWLKAEEITA-ELIARIQ-----PDPFSEERRNAVAAYVRRLIIQCF---------------P--CQVFTF 57 (347)
Q Consensus 1 ~~~~~~~~~~~~~l~~~i~-~f~~~l~-----Pt~~e~~~R~~vi~~l~~~i~~~~---------------p--~~v~~f 57 (347)
|++-|++-..=..-|.++. +++++++ -++.|-+.|.+++..++.+.++.. | .+++.|
T Consensus 8 GiTgP~ST~~aTe~En~Ln~~li~eLk~~g~FE~~~E~~~Rv~VL~~Lq~~~~eFV~~vs~~K~m~dgmar~aGGKIFTy 87 (552)
T COG5186 8 GITGPLSTREATEEENRLNGELIKELKERGFFEDDKEGQTRVRVLGKLQFMVREFVARVSRNKGMGDGMARPAGGKIFTY 87 (552)
T ss_pred cccCCcccccccHHHhhhhHHHHHHHHHcCCcCCchhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCceeeee
Confidence 5677777654444443333 3444443 478889999999999999876541 2 799999
Q ss_pred cccccCCCCCCCCcceeeecCCCcchhhHHHHHHHHHhhccccccccceeeeEEEe-eecceEEEEeecCeeEEEeecCC
Q 038458 58 GSVPLKTYLPDRDIDLGAFSDDQTLKDTWAHLVRDMLENEEKNEHAEFRVKEVQYI-QAEVKIIKCLVDNFVVDIAFNQL 136 (347)
Q Consensus 58 GS~~tgl~lp~SDiDl~v~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~I-~ArVPIIK~~~~~i~vDIs~n~~ 136 (347)
||+..|.+.|+||||-.++.|..-.++.++..+...|+... .++++..+ .|-|||||+...||++|+-|..+
T Consensus 88 GSYRLGVhgpGsDIDtLvvVPkHVsR~dFFt~f~~~Lrer~-------ei~eva~vpDAfVPIIK~KF~GIsIDLifARL 160 (552)
T COG5186 88 GSYRLGVHGPGSDIDTLVVVPKHVSRSDFFTHFYEELRERP-------EIEEVAKVPDAFVPIIKLKFQGISIDLIFARL 160 (552)
T ss_pred cceeeeccCCCCCcceEEEecccccHHHHHHHHHHHhccCc-------chhhhccCCcccceeEEEEecCccceeeeeec
Confidence 99999999999999999999987889999999999998754 46677777 99999999999999999988643
Q ss_pred C------cc-------------------chhhhHHHHHHHhccChhhHHHHHHHHHHHHHhhcccC-CCCCCCcHHHHHH
Q 038458 137 G------GL-------------------CTLCFLDEVDHLINENHLFKRSIILIKAWCYYESRILG-GHHGLISSYALVT 190 (347)
Q Consensus 137 ~------g~-------------------~~s~~l~~i~~~~~~~p~~r~L~~~lK~Wa~~~~r~ln-~~~GglsSYal~l 190 (347)
+ |+ +.++..++|-+++..-..|+..+..||+|| ++|..- .-.|..|+-||.+
T Consensus 161 s~P~Vp~~l~Lsd~nLLk~~dEkcilsLNGtRVTDeiL~LVP~~~vF~~ALRaIK~WA--qRRavYaN~~GfpGGVAwam 238 (552)
T COG5186 161 SIPVVPDGLNLSDDNLLKSMDEKCILSLNGTRVTDEILNLVPSVKVFHSALRAIKYWA--QRRAVYANPYGFPGGVAWAM 238 (552)
T ss_pred cCCcCCCcccccchhhhhcchHHHHHhhcCceehHHHHHhCCchHHHHHHHHHHHHHH--HhhhhhccccCCcchHHHHH
Confidence 2 21 122233334445555567888899999998 666664 4778899999999
Q ss_pred HHHHHHHhCcCCCCChHHHHHHHHhccccCCCCCeeEEeeCCcccCCCCC-ccCCCCCCCCCcccccHhHHHHHHhhcCC
Q 038458 191 LVLYIFHVFNGSFAGPLEVLYRFLEFFSKFDWDNFCLSLWGPVPISLLPD-VTAEPPRKDGGVLLLSKSFLDSCRYAYAD 269 (347)
Q Consensus 191 Mvi~fLQ~~~~~~~~p~~lL~~Ff~~Y~~Fd~~~~~isi~~~~~~~~~~~-~~~~~p~~~~g~~~~~~~~~~~~~~~~~~ 269 (347)
||...||.+|+.. ..-++-.||...++|+|.+-+|- .|+...|= +...-|. .|.
T Consensus 239 ~VARiCQLYPNA~--S~vIv~kFF~ils~WnWPqPviL----kPieDgplqvrvWnPK------------------vYp- 293 (552)
T COG5186 239 CVARICQLYPNAS--SFVIVCKFFEILSSWNWPQPVIL----KPIEDGPLQVRVWNPK------------------VYP- 293 (552)
T ss_pred HHHHHHhhccCcc--hHhHHHHHHHHHHhcCCCCCeEe----eeccCCCeeEEeeCCc------------------cCc-
Confidence 9999999998642 34578899999999999876652 11111100 0000110 010
Q ss_pred CCCCCCCCCCCccCcceEEeCCCCCCCCcccccCcchHHHHHHHHHHHHHHHHHHhcCCC--chHHHHHHHHhh
Q 038458 270 FPGGQENQGQPFVSKHFNVIDPLRVNNNLGRSVSKGNFFRIRTAFTFRAKGLARLLDCPN--EDLYNEVNQFFM 341 (347)
Q Consensus 270 ~~~~~~~~~~~~~~~~l~IeDPf~~~~N~~rsv~~~~~~~I~~~F~~a~~~l~~~~~~~~--~~~~~~~~~f~~ 341 (347)
.....+|.|+.|..|+.=.+.+++.+|-..|-.+|.+|++++.++..-.. .. .-+.++||.
T Consensus 294 ----------sDk~HRMPvITPAYPSMCATHNit~STq~vIl~EfvRa~~I~~di~~n~~~w~~-lFek~DFF~ 356 (552)
T COG5186 294 ----------SDKYHRMPVITPAYPSMCATHNITNSTQHVILMEFVRAHKILSDIERNALDWRR-LFEKSDFFS 356 (552)
T ss_pred ----------ccccccCccccCCchhhhhhccccchhhhhHHHHHHHHHHhhhhHhhccccHHH-HHHhhhHHH
Confidence 01124699999999987777778777888999999999999998873111 11 135677775
No 7
>cd05402 NT_PAP_TUTase Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases. Poly(A) polymerases (PAPs) catalyze mRNA poly(A) tail synthesis, and terminal uridylyl transferases (TUTases) uridylate RNA. PAPs in this subgroup include human PAP alpha, mouse testis-specific cytoplasmic PAP beta, human nuclear PAP gamma, Saccharomyces cerevisiae PAP1, TRF4 and-5, Schizosaccharomyces pombe caffeine-induced death proteins -1, and -14, Caenorhabditis elegans Germ Line Development-2, and Chlamydomonas reinhardtii MUT68. This family also includes human U6 snRNA-specific TUTase1, and Trypanosoma brucei 3'-TUTase-1,-2, and 4. This family belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, coordinate two divalent metal cations involved in a two-metal ion mechanism of nucleotide addition. For the majority of proteins in this family, these carboxyla
Probab=99.91 E-value=6.2e-24 Score=173.84 Aligned_cols=107 Identities=31% Similarity=0.487 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHchhCC-ceEEEecccccCCCCCCCCcceeeecCCC-cchhhHHHHHHHHHhhccccccccceeeeEE
Q 038458 34 RRNAVAAYVRRLIIQCFP-CQVFTFGSVPLKTYLPDRDIDLGAFSDDQ-TLKDTWAHLVRDMLENEEKNEHAEFRVKEVQ 111 (347)
Q Consensus 34 ~R~~vi~~l~~~i~~~~p-~~v~~fGS~~tgl~lp~SDiDl~v~~~~~-~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~ 111 (347)
.|++++++|++++++.+| +++++|||+++|+++|+||||+++..+.. .....+++.+.+.|++.. .+.++.
T Consensus 1 ~r~~i~~~l~~~i~~~~~~~~v~~fGS~~~g~~~~~SDiDl~i~~~~~~~~~~~~l~~l~~~l~~~~-------~~~~~~ 73 (114)
T cd05402 1 KREEVLDRLQELIKEWFPGAKLYPFGSYVTGLGLPGSDIDLCLLGPNHRVDREDFLRKLAKLLKKSG-------EVVEVE 73 (114)
T ss_pred CHHHHHHHHHHHHHHHCCCCEEEEecccccCCCCCCCCeeEEEEeCCCCccHHHHHHHHHHHHHhCC-------CceeeE
Confidence 388999999999999999 99999999999999999999999999974 356678888999998754 245677
Q ss_pred Ee-eecceEEEEeec--CeeEEEeecCCCccchhhhHHH
Q 038458 112 YI-QAEVKIIKCLVD--NFVVDIAFNQLGGLCTLCFLDE 147 (347)
Q Consensus 112 ~I-~ArVPIIK~~~~--~i~vDIs~n~~~g~~~s~~l~~ 147 (347)
.| +|||||||+++. |+.|||||||.+|+.|+.+++.
T Consensus 74 ~i~~ArVPiik~~~~~~~i~~Dis~~~~~g~~~s~li~~ 112 (114)
T cd05402 74 PIINARVPIIKFVDKPTGIEVDISFNNLNGIRNTKLLRA 112 (114)
T ss_pred EeccCCCCEEEEEEcCCCeEEEEEcccchHHHHHHHHHH
Confidence 77 999999999985 9999999999999999988743
No 8
>PF04928 PAP_central: Poly(A) polymerase central domain; InterPro: IPR007012 In eukaryotes, polyadenylation of pre-mRNA plays an essential role in the initiation step of protein synthesis, as well as in the export and stability of mRNAs. Poly(A) polymerase, the enzyme at the heart of the polyadenylation machinery, is a template-independent RNA polymerase which specifically incorporates ATP at the 3' end of mRNA. The crystal structure of bovine poly(A) polymerase bound to an ATP analog at 2.5 A resolutio has been determined []. The structure revealed expected and unexpected similarities to other proteins. As expected, the catalytic domain of poly(A) polymerase shares substantial structural homology with other nucleotidyl transferases such as DNA polymerase beta and kanamycin transferase. The central domain of Poly(A) polymerase shares structural similarity with the allosteric activity domain of ribonucleotide reductase R1, which comprises a four-helix bundle and a three-stranded mixed beta-sheet. Even though the two enzymes bind ATP, the ATP-recognition motifs are different.; GO: 0004652 polynucleotide adenylyltransferase activity, 0006351 transcription, DNA-dependent; PDB: 1Q79_A 1Q78_A 1F5A_A 2O1P_A 2HHP_A 3C66_B 1FA0_A 2Q66_A.
Probab=99.88 E-value=2.1e-22 Score=186.04 Aligned_cols=227 Identities=19% Similarity=0.283 Sum_probs=136.8
Q ss_pred CCCCCCCCchhhh----HHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHchhCCceEEEecccccCCCCCCCCccee
Q 038458 1 SVIRPLDPGRWLK----AEEITAELIARI--QPDPFSEERRNAVAAYVRRLIIQCFPCQVFTFGSVPLKTYLPDRDIDLG 74 (347)
Q Consensus 1 ~~~~~~~~~~~~~----l~~~i~~f~~~l--~Pt~~e~~~R~~vi~~l~~~i~~~~p~~v~~fGS~~tgl~lp~SDiDl~ 74 (347)
||+.||+-+.-.. .++++.+++... -||+||.+.|+.+++.|++++++.... .+
T Consensus 5 Gvt~PIS~~~Pt~~Dl~~s~~L~~~l~~~~~~es~ee~~~R~~vl~~L~~iv~~wv~~----------~~---------- 64 (254)
T PF04928_consen 5 GVTKPISLAPPTEKDLKRSASLEEFLKDYGLFESEEEEQKREEVLRKLQQIVKEWVKQ----------AL---------- 64 (254)
T ss_dssp STT--S------HHHHHHHHHHHHHHHHCT-S--HHHHHHHHHHHHHHHHHHHHHHHH----------SS----------
T ss_pred CCCCCccCCCCChhhHHhHHHHHHHHHHcCCCCChHHHhHHHHHHHHHHHHHHHHHHh----------hh----------
Confidence 7899998765544 466777777765 789999999999999999999875433 00
Q ss_pred eecCCCcchhhHHHHHHHHHhhccccccccceeeeEEEeeecce-EEEEeecCeeEEEeec---CCCccchhhhHHHHHH
Q 038458 75 AFSDDQTLKDTWAHLVRDMLENEEKNEHAEFRVKEVQYIQAEVK-IIKCLVDNFVVDIAFN---QLGGLCTLCFLDEVDH 150 (347)
Q Consensus 75 v~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~I~ArVP-IIK~~~~~i~vDIs~n---~~~g~~~s~~l~~i~~ 150 (347)
.++| .+.+..+.+-.|+... ..+|++. .+++.+
T Consensus 65 ----------------------------------------~~~p~~l~~~~~~~l~~ld~~s~~sLnG~Rv---~~~il~ 101 (254)
T PF04928_consen 65 ----------------------------------------PRVPEDLDLLDDDPLRNLDEASVRSLNGVRV---TDYILR 101 (254)
T ss_dssp ----------------------------------------SSB-TT--TT-GGGGTT--HHHHHHHHHHHH---HHHHHC
T ss_pred ----------------------------------------cCCCcccccCCchhhhCCCHhhccCcccccH---HHHHHH
Confidence 0111 1111111111111111 1233333 444566
Q ss_pred HhccChhhHHHHHHHHHHHHHhhccc-CCCCCCCcHHHHHHHHHHHHHhCcCCCCChHHHHHHHHhccccCCCCCeeEEe
Q 038458 151 LINENHLFKRSIILIKAWCYYESRIL-GGHHGLISSYALVTLVLYIFHVFNGSFAGPLEVLYRFLEFFSKFDWDNFCLSL 229 (347)
Q Consensus 151 ~~~~~p~~r~L~~~lK~Wa~~~~r~l-n~~~GglsSYal~lMvi~fLQ~~~~~~~~p~~lL~~Ff~~Y~~Fd~~~~~isi 229 (347)
.+.....||.++.+||.|| ++|++ ++..|+||+.+|++||+..||.+|.. ++..+|..||.+|++|||.+-
T Consensus 102 ~Vp~~~~Fr~~lR~IK~WA--k~RGIYsn~~GylGGI~waILvArvcql~Pn~--~~~~ll~~FF~~ys~W~W~~P---- 173 (254)
T PF04928_consen 102 LVPNQETFRTALRFIKLWA--KRRGIYSNVFGYLGGIHWAILVARVCQLYPNA--SPSTLLSRFFQIYSQWDWPNP---- 173 (254)
T ss_dssp TSS-HHHHHHHHHHHHHHH--HHTT-B-CCCTSB-HHHHHHHHHHHHHHSTT----HHHHHHHHHHHHHCS-TTS-----
T ss_pred HCCCHHHHHHHHHHHHHHH--HHccccchhhccchHHHHHHHHHHHHHHCccc--cccchHHHHHHHhcCCCCCCc----
Confidence 6777788999999999999 77777 47999999999999999999999863 678899999999999999873
Q ss_pred eCCcccCCCCCccCCCCCCCCCcccccHhHHHHHHhhcCCCCCCCCCCCCCccCcceEEeCCCCCCCCcccccCcchHHH
Q 038458 230 WGPVPISLLPDVTAEPPRKDGGVLLLSKSFLDSCRYAYADFPGGQENQGQPFVSKHFNVIDPLRVNNNLGRSVSKGNFFR 309 (347)
Q Consensus 230 ~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~IeDPf~~~~N~~rsv~~~~~~~ 309 (347)
+.+........ +. ..+.++ .........|.|.+|..|..|++++|++.|++.
T Consensus 174 ---V~l~~~~~~~~-------~~--------------~~w~p~----~~~~~~~~~MpIiTP~yP~~Nst~nVt~st~~~ 225 (254)
T PF04928_consen 174 ---VVLDPIEDGPL-------GF--------------KVWNPR----LYPRDRRHLMPIITPAYPSMNSTYNVTRSTLRI 225 (254)
T ss_dssp ---EESS-----SS-------SC--------------GS--TT----T-HHHHC-SS-EE-SSSS--BTTTT--HHHHHH
T ss_pred ---eeecccccCcc-------cc--------------cCCCCC----CCCCCcccceeEccCCCCccccccccCHHHHHH
Confidence 22221110000 00 000000 001112356999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhc
Q 038458 310 IRTAFTFRAKGLARLLD 326 (347)
Q Consensus 310 I~~~F~~a~~~l~~~~~ 326 (347)
|++||++|++++.++..
T Consensus 226 i~~Ef~ra~~i~~~~~~ 242 (254)
T PF04928_consen 226 IREEFQRAHEILSEILK 242 (254)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 99999999999999874
No 9
>PRK13300 tRNA CCA-pyrophosphorylase; Provisional
Probab=99.66 E-value=1.3e-14 Score=143.37 Aligned_cols=169 Identities=21% Similarity=0.268 Sum_probs=111.3
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHHHchh---CC--ceEEEecccccCCCCC-CCCcceeeecCCCcchhhHHHHHH
Q 038458 18 TAELIARIQPDPFSEERRNAVAAYVRRLIIQC---FP--CQVFTFGSVPLKTYLP-DRDIDLGAFSDDQTLKDTWAHLVR 91 (347)
Q Consensus 18 i~~f~~~l~Pt~~e~~~R~~vi~~l~~~i~~~---~p--~~v~~fGS~~tgl~lp-~SDiDl~v~~~~~~~~~~~~~~l~ 91 (347)
+.+.++.+.||++|.+.-....+.+...|++. .| +++.++||++.|.+++ +|||||.|..+.....+++.....
T Consensus 3 ~~evl~~i~Ps~eE~~~l~~~~~~l~~~L~~~~~~~~~~~~V~l~GS~ArgT~L~GdsDIDIFv~fp~~~~~e~L~~~gl 82 (447)
T PRK13300 3 LEEVLERIKPTEEEREKLKKVAEELIERLEEAIKELGLDAEVELVGSTARGTWLSGDRDIDIFVLFPKDTSREELEEKGL 82 (447)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEeeecCCcccCCCCceeEEEEeCCCCCHHHHHHHHH
Confidence 46678899999988877766666666665554 23 9999999999999999 899999999986444433322222
Q ss_pred HHHhhccccccccceeeeEEEeeecceEEEEeecCeeEEEe--ecCCCc--cch-----hhhHHHHHHHhccChhhHHHH
Q 038458 92 DMLENEEKNEHAEFRVKEVQYIQAEVKIIKCLVDNFVVDIA--FNQLGG--LCT-----LCFLDEVDHLINENHLFKRSI 162 (347)
Q Consensus 92 ~~L~~~~~~~~~~~~~~~v~~I~ArVPIIK~~~~~i~vDIs--~n~~~g--~~~-----s~~l~~i~~~~~~~p~~r~L~ 162 (347)
.+.....+.-...+ .++ -|.-|-++....|++|||- ++-..| +.+ -...+.+...+ +..++..+
T Consensus 83 ~i~~~~~~~~~~~~---~~~--yaeHpyv~~~~~G~~VDiVPcy~v~~~~~~~saVDRtp~H~~fv~~rl--~~~~~d~V 155 (447)
T PRK13300 83 EIGKEVAKELLGDY---EER--YAEHPYVTGEIDGFEVDIVPCYKVESGEEIISAVDRTPFHTKYVKERL--KGKLEDEV 155 (447)
T ss_pred HHHHHHHHhhCCcc---eee--eccCceEEEEECCEEEEEEeeEEccCcCcccccccCchHHHHHHHHhh--hhhHHHHH
Confidence 22221100000011 122 4888999999899999984 222222 222 12233344433 33488899
Q ss_pred HHHHHHHHHhhccc-CC--CCCCCcHHHHHHHHHHH
Q 038458 163 ILIKAWCYYESRIL-GG--HHGLISSYALVTLVLYI 195 (347)
Q Consensus 163 ~~lK~Wa~~~~r~l-n~--~~GglsSYal~lMvi~f 195 (347)
+++|.|. +..+. ++ +++|+|||..=|||++|
T Consensus 156 RLlK~f~--k~~gvYGsE~k~~GFSGYl~ELLv~~y 189 (447)
T PRK13300 156 RLLKQFL--KGIGVYGSELKTRGFSGYLCELLIIHY 189 (447)
T ss_pred HHHHHHH--HhCCccchhhccCCccHHHHHHHHHHh
Confidence 9999995 55554 53 89999999999999994
No 10
>TIGR03671 cca_archaeal CCA-adding enzyme.
Probab=99.66 E-value=9.7e-15 Score=142.35 Aligned_cols=233 Identities=21% Similarity=0.229 Sum_probs=144.1
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHH----HchhCC-ceEEEecccccCCCCC-CCCcceeeecCCCcchhhHHHHHH
Q 038458 18 TAELIARIQPDPFSEERRNAVAAYVRRL----IIQCFP-CQVFTFGSVPLKTYLP-DRDIDLGAFSDDQTLKDTWAHLVR 91 (347)
Q Consensus 18 i~~f~~~l~Pt~~e~~~R~~vi~~l~~~----i~~~~p-~~v~~fGS~~tgl~lp-~SDiDl~v~~~~~~~~~~~~~~l~ 91 (347)
+.+.++.+.||++|.+.-+.+.+.+... +.+..+ +++..|||++-|.+++ +|||||.|..+.....+++.....
T Consensus 2 ~~~vl~~i~Ps~eE~~~~~~~~~~l~~~l~~~~~e~~~~~~v~~~GS~ArgT~L~G~sDIDIfi~f~~~~~~e~l~~~gl 81 (408)
T TIGR03671 2 LEEVLERIKPTEEEREKLKKVADELIARLEEIIEELGVDAEVVLVGSYARGTWLKGDRDIDIFILFPKDTSREELEEYGL 81 (408)
T ss_pred hHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcceEEEEeeEecCCccCCCCceeEEEEeCCCCCHHHHHHHHH
Confidence 3566788999998887776555555444 444444 9999999999999999 999999999986434433322211
Q ss_pred HHHhhccccccccceeeeEEEeeecceEEEEeecCeeEEEe--ecCCCc--cch-----hhhHHHHHHHhccChhhHHHH
Q 038458 92 DMLENEEKNEHAEFRVKEVQYIQAEVKIIKCLVDNFVVDIA--FNQLGG--LCT-----LCFLDEVDHLINENHLFKRSI 162 (347)
Q Consensus 92 ~~L~~~~~~~~~~~~~~~v~~I~ArVPIIK~~~~~i~vDIs--~n~~~g--~~~-----s~~l~~i~~~~~~~p~~r~L~ 162 (347)
.+.....+. +. +...-.|.-|-++....|++|||- +.-..| +.+ -...+.+...+. ..++..+
T Consensus 82 ~i~~~~~~~-~~-----~~~~~yaeHpYv~~~~~G~~VDiVPcy~v~~g~~~~taVDRtp~H~~fv~~rl~--~~~~d~V 153 (408)
T TIGR03671 82 EIGHEVLKR-GG-----NYEERYAEHPYVSGEIEGFEVDVVPCYKVESGEEIISAVDRTPFHTRYVLERLD--GKLRDDV 153 (408)
T ss_pred HHHHHHHhh-CC-----CHhheeccCceEEEEEccEEEEEEeeEEccCcCeeeccccCchHHHHHHHHhhh--hhHHHHH
Confidence 211111000 00 011126888888888889999984 322222 211 122333344333 3478899
Q ss_pred HHHHHHHHHhhccc-CC--CCCCCcHHHHHHHHHHHHHhCcCCCCChHHHHHHHHhccccCCCCCeeEEeeCCcccCCCC
Q 038458 163 ILIKAWCYYESRIL-GG--HHGLISSYALVTLVLYIFHVFNGSFAGPLEVLYRFLEFFSKFDWDNFCLSLWGPVPISLLP 239 (347)
Q Consensus 163 ~~lK~Wa~~~~r~l-n~--~~GglsSYal~lMvi~fLQ~~~~~~~~p~~lL~~Ff~~Y~~Fd~~~~~isi~~~~~~~~~~ 239 (347)
+++|.|. +.-+. ++ +++|+|||..=|||++| .+. ..++..+-+ | . ..+.+. +.
T Consensus 154 RLlK~f~--k~igvYGsE~~~~GFSGYl~ELLv~~y-----G~F---~~~l~~a~~----w--k-~~~~id-~~------ 209 (408)
T TIGR03671 154 RLLKQFL--KGIGVYGSELKTRGFSGYLCELLVIHY-----GSF---ENVLKAASK----W--K-PGVVID-IE------ 209 (408)
T ss_pred HHHHHHH--HhCCccchhhccCCccHHHHHHHHHHh-----CCH---HHHHHHHHh----c--C-CCeEEe-cC------
Confidence 9999996 55444 53 89999999999999994 111 223333222 2 1 111110 00
Q ss_pred CccCCCCCCCCCcccccHhHHHHHHhhcCCCCCCCCCCCCCccCcceEEeCCCCCCCCcccccCcchHHHHHHHHHHHH
Q 038458 240 DVTAEPPRKDGGVLLLSKSFLDSCRYAYADFPGGQENQGQPFVSKHFNVIDPLRVNNNLGRSVSKGNFFRIRTAFTFRA 318 (347)
Q Consensus 240 ~~~~~~p~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~IeDPf~~~~N~~rsv~~~~~~~I~~~F~~a~ 318 (347)
. .+ ...| ..+|.|.||-||.+|+|.++|..++..+..+-+.+.
T Consensus 210 -------~--~~--------------------------~~~f-~~PlvViDPvDp~RNVAaalS~~~~~~fv~aar~fl 252 (408)
T TIGR03671 210 -------E--HG--------------------------TKKF-DDPLVVIDPVDPKRNVAAALSLENLARFILAARMFL 252 (408)
T ss_pred -------c--cc--------------------------cccC-CCCEEEeCCCCCcchHHHHcCHHHHHHHHHHHHHHH
Confidence 0 00 0112 257999999999999999999888877776666554
No 11
>COG1746 CCA1 tRNA nucleotidyltransferase (CCA-adding enzyme) [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=1.5e-11 Score=118.86 Aligned_cols=171 Identities=20% Similarity=0.224 Sum_probs=113.6
Q ss_pred hHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHchhC---C--ceEEEecccccCCCCC-CCCcceeeecCCCcchhhH
Q 038458 13 KAEEITAELIARIQPDPFSEERRNAVAAYVRRLIIQCF---P--CQVFTFGSVPLKTYLP-DRDIDLGAFSDDQTLKDTW 86 (347)
Q Consensus 13 ~l~~~i~~f~~~l~Pt~~e~~~R~~vi~~l~~~i~~~~---p--~~v~~fGS~~tgl~lp-~SDiDl~v~~~~~~~~~~~ 86 (347)
.+++.+.+.++.+.||++|.+.=..+.+.|+..+.+.. + +.+...||++-|++|+ +.|||+-|..|....+++.
T Consensus 2 ~~~~~l~evl~~i~P~~eE~~~~~~~~e~l~~~~~~~~~e~~~~aev~lVGS~AkgTwL~gd~DIDvFi~Fp~d~~~eel 81 (443)
T COG1746 2 TLEEVLEEVLKRIKPTEEERKKLKEVAEELRERINEIIEELGIDAEVVLVGSYAKGTWLRGDHDIDVFIAFPKDTSEEEL 81 (443)
T ss_pred chHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcceEEEEeecccCcccCCCcceeEEEECCCCCCHHHH
Confidence 46788899999999999998877777666666665543 2 9999999999999999 8999999999975444444
Q ss_pred HHHHHHHHhhccccccccceeeeEEEe-eecceEEEEeecCeeEEEe--ecCC------Cccchh-hhHHHHHHHhccCh
Q 038458 87 AHLVRDMLENEEKNEHAEFRVKEVQYI-QAEVKIIKCLVDNFVVDIA--FNQL------GGLCTL-CFLDEVDHLINENH 156 (347)
Q Consensus 87 ~~~l~~~L~~~~~~~~~~~~~~~v~~I-~ArVPIIK~~~~~i~vDIs--~n~~------~g~~~s-~~l~~i~~~~~~~p 156 (347)
-..-..+........ +. -+ -|.=|-+.-...|++|||- ++-. .++.-| ...+++...+..
T Consensus 82 ~~~GL~ig~~~l~~~--~~------~~~YAeHPYV~g~v~G~eVDvVPCy~v~~~~~~~sAVDRTplHt~yv~e~L~~-- 151 (443)
T COG1746 82 EEKGLEIGREVLKRG--NY------EERYAEHPYVTGEVDGYEVDVVPCYKVEDGEKIISAVDRTPLHTRYVEEHLKG-- 151 (443)
T ss_pred HHHHHHHHHHHhcCC--ch------hhhhccCCeeEEEEccEEEEEEecccccCcccccccccCcchhHHHHHHHhcc--
Confidence 322222222111000 11 13 6888999999999999985 2222 222211 112233333322
Q ss_pred hhHHHHHHHHHHHHHhhccc-CC--CCCCCcHHHHHHHHHHH
Q 038458 157 LFKRSIILIKAWCYYESRIL-GG--HHGLISSYALVTLVLYI 195 (347)
Q Consensus 157 ~~r~L~~~lK~Wa~~~~r~l-n~--~~GglsSYal~lMvi~f 195 (347)
+-+.=++++|.+ +|.-+. ++ .++|+|+|.-=||||+|
T Consensus 152 ~~~deVrLLK~F--lK~iGvYGaE~rt~GFSGYL~ELLII~y 191 (443)
T COG1746 152 RQKDEVRLLKQF--LKGIGVYGAELRTQGFSGYLCELLIIHY 191 (443)
T ss_pred cchhHHHHHHHH--HhccCccceeeeeccchHHHHHHHHhhh
Confidence 233457889965 465444 53 89999999999999984
No 12
>PF03828 PAP_assoc: Cid1 family poly A polymerase; InterPro: IPR002058 These PAP/25A associated domains are found in uncharacterised eukaryotic proteins, a number of which are described as 'topoisomerase 1-related' though they appear to have little or no homology to topoisomerase 1. The signatures that define this group of sequences often occur towards the C terminus after the PAP/25A core domain IPR001201 from INTERPRO.; PDB: 2B4V_A 2B56_A 2B51_A 4EP7_B 2NOM_B 2Q0G_B 2Q0D_B 2Q0C_A 2Q0F_A 2Q0E_A ....
Probab=99.12 E-value=1.9e-11 Score=88.40 Aligned_cols=28 Identities=32% Similarity=0.584 Sum_probs=24.4
Q ss_pred hHHHHHHHHhccc-cCCCCCeeEEeeCCc
Q 038458 206 PLEVLYRFLEFFS-KFDWDNFCLSLWGPV 233 (347)
Q Consensus 206 p~~lL~~Ff~~Y~-~Fd~~~~~isi~~~~ 233 (347)
.|+||.+||+||| +|||++.+|||+.+.
T Consensus 2 lg~Ll~~Ff~~Y~~~Fd~~~~~Isi~~g~ 30 (60)
T PF03828_consen 2 LGELLLGFFEYYGRKFDYENNVISIRNGG 30 (60)
T ss_dssp HHHHHHHHHHHHHHTS-TTTEEEESSSSS
T ss_pred HHHHHHHHHHHhCCcCCCCceEEEecCCc
Confidence 5899999999999 999999999998643
No 13
>PF01909 NTP_transf_2: Nucleotidyltransferase domain A subset of this Pfam family; InterPro: IPR002934 A small region that overlaps with a nuclear localization signal and binds to the RNA primer contains three aspartates that are essential for catalysis. Sequence and secondary structure comparisons of regions surrounding these aspartates with sequences of other polymerases revealed a significant homology to the palm structure of DNA polymerase beta, terminal deoxynucleotidyltransferase and DNA polymerase IV of Saccharomyces cerevisiae, all members of the family X of polymerases. This homology extends as far as cca: tRNA nucleotidyltransferase and streptomycin adenylyltransferase, an antibiotic resistance factor [, ]. Proteins containing this domain include kanamycin nucleotidyltransferase (KNTase) which is a plasmid-coded enzyme responsible for some types of bacterial resistance to aminoglycosides. KNTase inactivates antibiotics by catalysing the addition of a nucleotidyl group onto the drug. In experiments, Mn2+ strongly stimulated this reaction due to a 50-fold lower Ki for 8-azido-ATP in the presence of Mn2+. Mutations of the highly conserved Asp residues 113, 115, and 167, critical for metal binding in the catalytic domain of bovine poly(A) polymerase, led to a strong reduction of cross-linking efficiency, and Mn2+ no longer stimulated the reaction. Mutations in the region of the "helical turn motif" (a domain binding the triphosphate moiety of the nucleotide) and in the suspected nucleotide-binding helix of bovine poly(A) polymerase impaired ATP binding and catalysis. The results indicate that ATP is bound in part by the helical turn motif and in part by a region that may be a structural analogue of the fingers domain found in many polymerases.; GO: 0016779 nucleotidyltransferase activity; PDB: 4EBK_B 4EBJ_A 1KNY_A 2B4V_A 2B56_A 2B51_A 1NO5_B 1Q79_A 1Q78_A 1F5A_A ....
Probab=98.32 E-value=3.4e-07 Score=71.40 Aligned_cols=42 Identities=29% Similarity=0.475 Sum_probs=38.1
Q ss_pred HHHHHHHHchhCC-ceEEEecccccCCCCCCCCcceeeecCCC
Q 038458 39 AAYVRRLIIQCFP-CQVFTFGSVPLKTYLPDRDIDLGAFSDDQ 80 (347)
Q Consensus 39 i~~l~~~i~~~~p-~~v~~fGS~~tgl~lp~SDiDl~v~~~~~ 80 (347)
++++.+.+++.++ ..+.+|||+++|.+.|+||||++|..+..
T Consensus 1 i~~i~~~l~~~~~~~~v~lfGS~a~g~~~~~SDIDl~i~~~~~ 43 (93)
T PF01909_consen 1 IEEIKEILKELFGVAEVYLFGSYARGDATPDSDIDLLIILDEP 43 (93)
T ss_dssp HHHHHHHHHHHHTTEEEEEEHHHHHTSSCTTSCEEEEEEESST
T ss_pred CHHHHHHHHHHCCCCEEEEECCcccCcCCCCCCEEEEEEeCCc
Confidence 4677788888888 99999999999999999999999999974
No 14
>cd05397 NT_Pol-beta-like Nucleotidyltransferase (NT) domain of DNA polymerase beta and similar proteins. This superfamily includes the NT domains of DNA polymerase beta and other family X DNA polymerases, as well as the NT domains of Class I and Class II CCA-adding enzymes, RelA- and SpoT-like ppGpp synthetases and hydrolases, 2'5'-oligoadenylate (2-5A)synthetases, Escherichia coli adenylyltransferase (GlnE), Escherichia coli uridylyl transferase (GlnD), poly (A) polymerases, terminal uridylyl transferases, and Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins. The Escherichia coli CCA-adding enzyme belongs to this superfamily but is not included as this enzyme lacks the N-terminal helix conserved in the remainder of the superfamily. In the majority of the Pol beta-like superfamily NTs, two carboxylates, Dx[D/E], together with a third more distal carboxylate coordinate two divalent metal cations that are essential for catalysis. These divalent metal ions are
Probab=98.31 E-value=1e-06 Score=60.97 Aligned_cols=40 Identities=18% Similarity=0.350 Sum_probs=35.6
Q ss_pred HHHHHHHHHHchhCC-ceEEEecccccCCCCCCCCcceeee
Q 038458 37 AVAAYVRRLIIQCFP-CQVFTFGSVPLKTYLPDRDIDLGAF 76 (347)
Q Consensus 37 ~vi~~l~~~i~~~~p-~~v~~fGS~~tgl~lp~SDiDl~v~ 76 (347)
++++.+++.+++..+ ..+..|||++.|.+.|.||||+++.
T Consensus 2 ~~l~~i~~~l~~~~~~~~v~lfGS~arg~~~~~SDIDi~v~ 42 (49)
T cd05397 2 ELLDIIKERLKKLVPGYEIVVYGSLVRGLLKKSSDIDLACV 42 (49)
T ss_pred HHHHHHHHHHHhhcCCcEEEEECCcCCCCCCCCCCEEEEEE
Confidence 467778888888777 9999999999999999999999986
No 15
>cd05400 NT_2-5OAS_ClassI-CCAase Nucleotidyltransferase (NT) domain of 2'5'-oligoadenylate (2-5A)synthetase (2-5OAS) and class I CCA-adding enzyme. In vertebrates, 2-5OASs are induced by interferon during the innate immune response to protect against RNA virus infections. In the presence of an RNA activator, 2-5OASs catalyze the oligomerization of ATP into 2-5A. 2-5A activates endoribonuclease L, which leads to degradation of the viral RNA. 2-5OASs are also implicated in cell growth control, differentiation, and apoptosis. This family includes human OAS1, -2, -3, and OASL. CCA-adding enzymes add the sequence [cytidine(C)-cytidine-adenosine (A)], one nucleotide at a time, onto the 3' end of tRNA, in a template-independent reaction. This class I group includes the archaeal Sulfolobus shibatae and Archeoglobus fulgidus CCA-adding enzymes. It belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more dis
Probab=97.94 E-value=8.4e-05 Score=62.80 Aligned_cols=94 Identities=23% Similarity=0.279 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHchhC-C-ceEEEecccccCCCCC-CCCcceeeecCCCcc-----hhhHHHHHHHHHhhccccccc
Q 038458 32 EERRNAVAAYVRRLIIQCF-P-CQVFTFGSVPLKTYLP-DRDIDLGAFSDDQTL-----KDTWAHLVRDMLENEEKNEHA 103 (347)
Q Consensus 32 ~~~R~~vi~~l~~~i~~~~-p-~~v~~fGS~~tgl~lp-~SDiDl~v~~~~~~~-----~~~~~~~l~~~L~~~~~~~~~ 103 (347)
......+.+.|++.....- + ..+.+|||++.|.+++ .||||+++..+.... ...++..+.+.|+.....
T Consensus 6 ~~~~~~i~~~L~~~~~~~~~~~~~~~~~GS~a~~T~i~~~sDiD~~v~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~--- 82 (143)
T cd05400 6 KERYREIREALKESLSELAGRVAEVFLQGSYARGTALRGDSDIDLVVVLPDDTSFAEYGPAELLDELGEALKEYYGA--- 82 (143)
T ss_pred HHHHHHHHHHHHHhcccccccccEEEEEcceeCCCCCCCCCceeEEEEEcCcccccccCHHHHHHHHHHHHHHhcCc---
Confidence 3444556666666554332 3 8999999999999988 899999999986422 234566677777654210
Q ss_pred cceeeeEEEeeecceEEEEee--cCeeEEE--eec
Q 038458 104 EFRVKEVQYIQAEVKIIKCLV--DNFVVDI--AFN 134 (347)
Q Consensus 104 ~~~~~~v~~I~ArVPIIK~~~--~~i~vDI--s~n 134 (347)
-..+..+=|-|.+.. .++++|| ++.
T Consensus 83 ------~~~~~~~~~~v~v~~~~~~~~vDvvP~~~ 111 (143)
T cd05400 83 ------NEEVKAQHRSVTVKFKGQGFHVDVVPAFE 111 (143)
T ss_pred ------ccccccCceEEEEEEcCCCeEEEEEEEee
Confidence 012234445666665 3899999 553
No 16
>PF10421 OAS1_C: 2'-5'-oligoadenylate synthetase 1, domain 2, C-terminus ; InterPro: IPR018952 This is the largely alpha-helical, C-terminal half of 2'-5'-oligoadenylate synthetase 1, being described as domain 2 of the enzyme and homologous to a tandem ubiquitin repeat. It carries the region of enzymic activity between residues 320 and 344 at the extreme C-terminal end []. Oligoadenylate synthetases are antiviral enzymes that counteract viral attack by degrading viral RNA. The enzyme uses ATP in 2'-specific nucleotidyl transfer reactions to synthesise 2'.5'-oligoadenylates, which activate latent ribonuclease, resulting in degradation of viral RNA and inhibition of virus replication []. This domain is often associated with IPR002934 from INTERPRO. ; PDB: 1PX5_B.
Probab=97.84 E-value=6.3e-05 Score=66.40 Aligned_cols=61 Identities=26% Similarity=0.408 Sum_probs=41.7
Q ss_pred CccchhhhHHHHHHHhccCh-hhHHHHHHHHHHHHHhhcccC--CCCCCCcHHHHHHHHHHHHHhC
Q 038458 137 GGLCTLCFLDEVDHLINENH-LFKRSIILIKAWCYYESRILG--GHHGLISSYALVTLVLYIFHVF 199 (347)
Q Consensus 137 ~g~~~s~~l~~i~~~~~~~p-~~r~L~~~lK~Wa~~~~r~ln--~~~GglsSYal~lMvi~fLQ~~ 199 (347)
.|-.+.+|.++=..++...| .++.|+++||+|. ++..-. ...+-.+||+|-||+|+.-.+-
T Consensus 22 ~gefS~cftelQ~~Fvk~rP~klK~LIrLVKhWy--~~~~~~~~~~~~lPpsYaLELLtIyAWE~g 85 (190)
T PF10421_consen 22 PGEFSACFTELQRNFVKHRPTKLKNLIRLVKHWY--QQCKKKKCGGGSLPPSYALELLTIYAWEQG 85 (190)
T ss_dssp TTTTGGGGHHHHHHHHHTS-HHHHHHHHHHHHHH--HHHHCC--HTT-S--HHHHHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--HHHHhhccCCCCCcHHHHHHHHHHHHHHhc
Confidence 45566677776666666655 8999999999996 333323 3445578999999999998764
No 17
>cd05403 NT_KNTase_like Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins. S. aureus KNTase is a plasmid encoded enzyme which confers resistance to a wide range of aminoglycoside antibiotics which have a 4'- or 4''-hydroxyl group in the equatorial position, such as kanamycin A. This enzyme transfers a nucleoside monophosphate group from a nucleotide (ATP,GTP, or UTP) to the 4'-hydroxyl group of kanamycin A. This enzyme is a homodimer, having two NT active sites. The nucleotide and antibiotic binding sites of each active site include residues from each monomer. Included in this subgroup is Escherichia coli AadA5 which confers resistance to the antibiotic spectinomycin and is a putative aminoglycoside-3'-adenylyltransferase. It is part of the aadA5 cassette of a class 1 integron. This subgroup also includes Haemophilus influenzae HI0073 which forms a 2:2 heterotetramer with an unrelated protein HI0074. Structurally HI0074 is
Probab=97.80 E-value=2.9e-05 Score=60.03 Aligned_cols=43 Identities=28% Similarity=0.388 Sum_probs=34.9
Q ss_pred HHHHHHHHHchhCC--ceEEEecccccCCCCCCCCcceeeecCCC
Q 038458 38 VAAYVRRLIIQCFP--CQVFTFGSVPLKTYLPDRDIDLGAFSDDQ 80 (347)
Q Consensus 38 vi~~l~~~i~~~~p--~~v~~fGS~~tgl~lp~SDiDl~v~~~~~ 80 (347)
.++.+...+++..+ ..+..|||.+.|-+.++||||++++....
T Consensus 3 ~~~~i~~~l~~~~~~i~~i~LfGS~arg~~~~~SDiDl~vi~~~~ 47 (93)
T cd05403 3 ILEEILEILRELLGGVEKVYLFGSYARGDARPDSDIDLLVIFDDP 47 (93)
T ss_pred hHHHHHHHHHHHhCCccEEEEEeeeecCCCCCCCCeeEEEEeCCC
Confidence 34555555655553 89999999999999999999999999864
No 18
>PF03813 Nrap: Nrap protein; InterPro: IPR005554 Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localized in the nucleolus []. Nrap is a large nucleolar protein (of more than 1000 amino acids). Nrap appears to be associated with ribosome biogenesis by interacting with pre-rRNA primary transcript [].
Probab=97.61 E-value=0.00049 Score=75.58 Aligned_cols=137 Identities=15% Similarity=0.190 Sum_probs=101.2
Q ss_pred HHHHHhccChhhHHHHHHHHHHHHHhhcccCCCC--CCCcHHHHHHHHHHHHHh------Cc-CCCCChHHHHHHHHhcc
Q 038458 147 EVDHLINENHLFKRSIILIKAWCYYESRILGGHH--GLISSYALVTLVLYIFHV------FN-GSFAGPLEVLYRFLEFF 217 (347)
Q Consensus 147 ~i~~~~~~~p~~r~L~~~lK~Wa~~~~r~ln~~~--GglsSYal~lMvi~fLQ~------~~-~~~~~p~~lL~~Ff~~Y 217 (347)
.+.+.....|.++..++++|.|+ .+|+++... ||+|++-+++++++.+|. .. ....+.-|++..+++|-
T Consensus 155 ~l~~~~~~~p~f~dA~iLlkvWl--~QRg~~~~~~~~Gf~~f~~s~lla~Ll~~g~~~~~~~l~~~mSsyQlFr~~l~fL 232 (972)
T PF03813_consen 155 YLHEASKSSPAFRDACILLKVWL--RQRGFGSGISQGGFGGFEWSMLLAYLLQGGGRNGKKKLSKSMSSYQLFRAVLQFL 232 (972)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH--hcCCCCcccCCCCcchHHHHHHHHHHHcCCCccCCcccCCCCCHHHHHHHHHHHH
Confidence 34456667899999999999998 899998655 999999999988888887 21 11245578999999999
Q ss_pred ccCCCCCeeEEeeCCcccCCCCCccCCCCCCCCCcccccHhHHHHHHhhcCCCCCCCCCCCCCccCcceEEeCCCCCCCC
Q 038458 218 SKFDWDNFCLSLWGPVPISLLPDVTAEPPRKDGGVLLLSKSFLDSCRYAYADFPGGQENQGQPFVSKHFNVIDPLRVNNN 297 (347)
Q Consensus 218 ~~Fd~~~~~isi~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~IeDPf~~~~N 297 (347)
+.-||.+.++.+..... . .+ ...++. .....+.-||--. .|
T Consensus 233 A~~d~~~~~l~~~~~~~--~-------~~--------~~~~~~---------------------~~~~~vf~D~sg~-~N 273 (972)
T PF03813_consen 233 ATTDLSKKPLFFKSSSD--S-------TE--------SLEEFH---------------------SAFDPVFVDPSGG-LN 273 (972)
T ss_pred hccccccCceEEecCCC--c-------cc--------hhhhhh---------------------ccCCeEEEeCCCC-EE
Confidence 99999888887653210 0 00 000000 0123567788776 89
Q ss_pred cccccCcchHHHHHHHHHHHHHHHHHH
Q 038458 298 LGRSVSKGNFFRIRTAFTFRAKGLARL 324 (347)
Q Consensus 298 ~~rsv~~~~~~~I~~~F~~a~~~l~~~ 324 (347)
++..++..+++.++.+-+.+.+.|.+.
T Consensus 274 l~~~ms~~s~~~L~~eA~~tl~lL~~~ 300 (972)
T PF03813_consen 274 LLAKMSPSSYEELQHEAKLTLELLDDS 300 (972)
T ss_pred EEEcCCHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999888887654
No 19
>PF09249 tRNA_NucTransf2: tRNA nucleotidyltransferase, second domain; InterPro: IPR015329 This domain adopts a structure consisting of a five helical bundle core. It is predominantly found in Archaeal tRNA nucleotidyltransferases, following the catalytic nucleotidyltransferase domain []. ; GO: 0004810 tRNA adenylyltransferase activity, 0016437 tRNA cytidylyltransferase activity; PDB: 3OUY_B 2ZHB_A 2ZH1_A 2ZH2_A 1UET_A 2ZH7_A 1R8B_A 2DR5_A 1TFW_C 3OVA_A ....
Probab=97.53 E-value=0.0002 Score=57.72 Aligned_cols=29 Identities=28% Similarity=0.381 Sum_probs=22.3
Q ss_pred cceEEeCCCCCCCCcccccCcchHHHHHH
Q 038458 284 KHFNVIDPLRVNNNLGRSVSKGNFFRIRT 312 (347)
Q Consensus 284 ~~l~IeDPf~~~~N~~rsv~~~~~~~I~~ 312 (347)
.+|.|.||-||++|+|.+||..++.++..
T Consensus 70 ~PlvviDPvDp~RNVAAalS~~~~~~fv~ 98 (114)
T PF09249_consen 70 DPLVVIDPVDPNRNVAAALSLENLAEFVH 98 (114)
T ss_dssp SS-EEEETTEEEEETTTTS-HHHHHHHHH
T ss_pred CCeEEcCCCCCCchHhHhcCHHHHHHHHH
Confidence 57999999999999999999777654443
No 20
>COG1669 Predicted nucleotidyltransferases [General function prediction only]
Probab=97.51 E-value=0.0002 Score=56.38 Aligned_cols=46 Identities=20% Similarity=0.208 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHchhCC-ceEEEecccccCCCCCCCCcceeeecCCC
Q 038458 35 RNAVAAYVRRLIIQCFP-CQVFTFGSVPLKTYLPDRDIDLGAFSDDQ 80 (347)
Q Consensus 35 R~~vi~~l~~~i~~~~p-~~v~~fGS~~tgl~lp~SDiDl~v~~~~~ 80 (347)
.+.+++.+...+++.++ +++-+|||++-|=..|+||||+.|.....
T Consensus 7 ~~~~lr~~~~~l~~k~gv~~~~vFGS~aRgE~~~~SDIDILVef~~~ 53 (97)
T COG1669 7 LKKILRKIKPELKEKYGVKRVAVFGSYARGEQKPDSDIDILVEFEPG 53 (97)
T ss_pred HHHHHHHHHHHHHHHhCCceEEEeeeeecCCCCCCCCceeEEeecCC
Confidence 44558888888988898 99999999999999999999999999863
No 21
>smart00572 DZF domain in DSRM or ZnF_C2H2 domain containing proteins.
Probab=97.50 E-value=0.0057 Score=56.31 Aligned_cols=200 Identities=14% Similarity=0.115 Sum_probs=116.8
Q ss_pred eEEEecccccCCCCC-CCCcceeeecCCCcchhhHHHHHHHHHhhccccccccceeeeEEEeeecceEEEEee--c--Ce
Q 038458 53 QVFTFGSVPLKTYLP-DRDIDLGAFSDDQTLKDTWAHLVRDMLENEEKNEHAEFRVKEVQYIQAEVKIIKCLV--D--NF 127 (347)
Q Consensus 53 ~v~~fGS~~tgl~lp-~SDiDl~v~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~I~ArVPIIK~~~--~--~i 127 (347)
.|.-.||++.|+-+. +-++|+|+++......+ ..+.+...+...-+....+ .. .+.+..+.+|.+++.. + ..
T Consensus 4 gV~rVG~~aKG~ll~Gd~~~~lVv~c~~~PT~~-ll~~v~~~l~e~l~~~~~~-e~-~~~~~~~~~~~~~~~i~ltSp~~ 80 (246)
T smart00572 4 GVMRVGSFAKGTLLKGDNVAELVLLCKEKPTSE-LVARLARKLPEQLKAVTED-EA-LIIVTSTKEPTMEVGILITSPLA 80 (246)
T ss_pred ceEEeeeeccCceecCCCceeEEEEecCCCcHH-HHHHHHHHHHHHHhhcCcc-cc-eeeeeccCCCceeEEEEEecccc
Confidence 477889999999997 46789999998743333 3344433332211100000 01 1112267778887774 2 22
Q ss_pred eEEEeec----CCCcc---------------chhhhHHHHHHHhccChhhHHHHHHHHHHHHHhhcccCCCCCCCcHHHH
Q 038458 128 VVDIAFN----QLGGL---------------CTLCFLDEVDHLINENHLFKRSIILIKAWCYYESRILGGHHGLISSYAL 188 (347)
Q Consensus 128 ~vDIs~n----~~~g~---------------~~s~~l~~i~~~~~~~p~~r~L~~~lK~Wa~~~~r~ln~~~GglsSYal 188 (347)
..++... |.... ...+..++++.....-..++.++.++|-|+ +|. +..+-|+||++
T Consensus 81 r~~~~~~~~~~~~~~~~p~~~ld~~~cl~aLAalRhakWFq~~a~~l~s~~iviRilKd~~---~R~--~~~~pL~~w~i 155 (246)
T smart00572 81 RVELLITTVPENLRKLDPEDHLDRKKCLSALASLRHAKWFQARASGLQSCVIVIRVLRDLC---NRV--PTWQPLSGWPL 155 (246)
T ss_pred cccccccccCcccccCCccccCCHHHHHHHHHHHHHhHHHHHhccCCcchhhHHHHHHHHH---Hhc--ccccccccccH
Confidence 3333321 11111 011111222333333346889999999986 331 12234999999
Q ss_pred HHHHHHHHHhCcCCCCChHHHHHHHHhccc--cCCCCCeeEEeeCCcccCCCCCccCCCCCCCCCcccccHhHHHHHHhh
Q 038458 189 VTLVLYIFHVFNGSFAGPLEVLYRFLEFFS--KFDWDNFCLSLWGPVPISLLPDVTAEPPRKDGGVLLLSKSFLDSCRYA 266 (347)
Q Consensus 189 ~lMvi~fLQ~~~~~~~~p~~lL~~Ff~~Y~--~Fd~~~~~isi~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~~~~~~~~ 266 (347)
=+++-+.+-. .....+|++.|.+||++-+ .| |
T Consensus 156 ELl~~~~i~~-~~~~l~~~~a~RR~fe~lAsG~l-~-------------------------------------------- 189 (246)
T smart00572 156 ELLVEKAIGS-ARQPLGLGDAFRRVFECLASGIL-L-------------------------------------------- 189 (246)
T ss_pred HHHHHHHhcc-CCCCCCHHHHHHHHHHHHHhccC-c--------------------------------------------
Confidence 9888766642 2344678999999998866 22 1
Q ss_pred cCCCCCCCCCCCCCccCcceEEeCCCCC-CCCcccccCcchHHHHHHHHHHHHHHHH
Q 038458 267 YADFPGGQENQGQPFVSKHFNVIDPLRV-NNNLGRSVSKGNFFRIRTAFTFRAKGLA 322 (347)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~l~IeDPf~~-~~N~~rsv~~~~~~~I~~~F~~a~~~l~ 322 (347)
+ ....|.||-+. .+|+++..+...-+.|..+-+.|.+.+.
T Consensus 190 ---------------p-~~~gI~DPce~~~~nv~~~lT~qqrd~It~sAQ~alRl~A 230 (246)
T smart00572 190 ---------------P-GSPGLTDPCEKDNTDALTALTLQQREDVTASAQTALRLLA 230 (246)
T ss_pred ---------------C-CCCCCcCCCCCCcccHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 0 11358999996 8999999887777777777776666543
No 22
>PRK13746 aminoglycoside resistance protein; Provisional
Probab=96.96 E-value=0.0022 Score=59.89 Aligned_cols=42 Identities=19% Similarity=0.141 Sum_probs=34.7
Q ss_pred HHHHHHHHchhCC---ceEEEecccccCCCCCCCCcceeeecCCC
Q 038458 39 AAYVRRLIIQCFP---CQVFTFGSVPLKTYLPDRDIDLGAFSDDQ 80 (347)
Q Consensus 39 i~~l~~~i~~~~p---~~v~~fGS~~tgl~lp~SDiDl~v~~~~~ 80 (347)
++.++.++++..+ ..|+.|||.+.|-+-|.||||+.|+....
T Consensus 13 l~~~~~~l~~~l~~~l~~vyLfGS~~~G~~~p~SDIDllvvv~~~ 57 (262)
T PRK13746 13 LSEACAVIERHLEPTLLAIHLYGSAVDGGLKPHSDIDLLVTVAVP 57 (262)
T ss_pred HHHHHHHHHHhCcccEEEEEEECCcccCCCCCCCceeEEEEeCCC
Confidence 3445566766666 47999999999999999999999999874
No 23
>COG1708 Predicted nucleotidyltransferases [General function prediction only]
Probab=96.90 E-value=0.0017 Score=52.92 Aligned_cols=31 Identities=29% Similarity=0.405 Sum_probs=27.6
Q ss_pred hhCC-ceEEEecccccCCCCCCCCcceeeecC
Q 038458 48 QCFP-CQVFTFGSVPLKTYLPDRDIDLGAFSD 78 (347)
Q Consensus 48 ~~~p-~~v~~fGS~~tgl~lp~SDiDl~v~~~ 78 (347)
...+ ..+++|||++.|-+.+.||||+++..+
T Consensus 22 ~~~~~~~v~LfGS~arG~~~~~SDiDv~vv~~ 53 (128)
T COG1708 22 KLGGDLLIYLFGSYARGDFVKESDIDLLVVSD 53 (128)
T ss_pred hcCCCeEEEEEccCcccccccCCCeeEEEEcC
Confidence 3344 999999999999999999999999984
No 24
>KOG3793 consensus Transcription factor NFAT, subunit NF45 [Transcription]
Probab=96.82 E-value=0.037 Score=51.19 Aligned_cols=209 Identities=17% Similarity=0.186 Sum_probs=121.3
Q ss_pred CCchhhhHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHchhC-C-------ceEEEecccccCCCCCCCCc-ceeeec
Q 038458 7 DPGRWLKAEEITAELIARIQPDPFSEERRNAVAAYVRRLIIQCF-P-------CQVFTFGSVPLKTYLPDRDI-DLGAFS 77 (347)
Q Consensus 7 ~~~~~~~l~~~i~~f~~~l~Pt~~e~~~R~~vi~~l~~~i~~~~-p-------~~v~~fGS~~tgl~lp~SDi-Dl~v~~ 77 (347)
-+..-.++++++.+=-+-+.|+++|...-...+.+++.++.+.. | ..|.-.|||.+|..+-++|. |+||+.
T Consensus 34 k~a~D~~f~~alLkRnqdL~P~~~~q~~I~~~vtKV~~vLdn~~~~~L~~~~ieevrqVGSF~k~T~~tg~~~advVViL 113 (362)
T KOG3793|consen 34 KPAPDTSFSEALLKRNQDLAPNSAEQASILSLVTKVNNVLDNLVAPGLFEVQIEEVRQVGSFKKGTMTTGHNVADLVVIL 113 (362)
T ss_pred CCCcchHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHHhhccCCceEeehhhhhhccceeccccccCCcccceEEEe
Confidence 34556788999999999999999988877778888888776652 2 56777899999999888775 777777
Q ss_pred CCCcchhh---HHHHHHHHHhhccccc-------cccceeeeEEEeeecceEEEEee--------cCeeEEEee--cCCC
Q 038458 78 DDQTLKDT---WAHLVRDMLENEEKNE-------HAEFRVKEVQYIQAEVKIIKCLV--------DNFVVDIAF--NQLG 137 (347)
Q Consensus 78 ~~~~~~~~---~~~~l~~~L~~~~~~~-------~~~~~~~~v~~I~ArVPIIK~~~--------~~i~vDIs~--n~~~ 137 (347)
..-...+. +-+++.+-|+.....+ ...+.+. -.+|+|-|+--+. ..++.|+-. .+..
T Consensus 114 kTLPt~EaV~aLg~Kv~e~lka~d~~Evltvl~~e~G~~I~---s~~~~VRiLIt~iP~n~~KLEP~lHLD~K~M~~~l~ 190 (362)
T KOG3793|consen 114 KTLPTLEAVAALGNKVVESLRAQDPSEVLTVLTNETGFEIS---SSDATVRILITTVPPNLRKLEPELHLDIKVMQSALA 190 (362)
T ss_pred ecCCcHHHHHHHHHHHHHHhhhcChHHHHHHHhhccceeee---cccceEEEEEeecCchhcccChhhhhhHHHHHHHHH
Confidence 65333332 2233333333221110 0112222 2278888876653 246777654 2344
Q ss_pred ccchhhhHHHHHHHhccChhhHHHHHHHHHHHHHhhcccCCCCCCCcHHHHHHHHHHHHHhCcCCCCChH-HHHHHHHhc
Q 038458 138 GLCTLCFLDEVDHLINENHLFKRSIILIKAWCYYESRILGGHHGLISSYALVTLVLYIFHVFNGSFAGPL-EVLYRFLEF 216 (347)
Q Consensus 138 g~~~s~~l~~i~~~~~~~p~~r~L~~~lK~Wa~~~~r~ln~~~GglsSYal~lMvi~fLQ~~~~~~~~p~-~lL~~Ff~~ 216 (347)
+++...|.++. .....++-|+.++|-- ..| ..+ ..-||-+.|-++.-+-+.+.|.+..-++ -.+.+||+.
T Consensus 191 a~RH~~WFee~----A~~s~~~~lir~LKDl---r~r-~~~-F~PLs~W~ldll~h~avmNnp~RQ~l~ln~Afrr~~qi 261 (362)
T KOG3793|consen 191 AIRHARWFEEN----ASQSTVKVLIRLLKDL---RIR-FPG-FEPLTPWILDLLGHYAVMNNPTRQPLALNVAYRRCLQI 261 (362)
T ss_pred HHhhhhhhhhh----hhHHHHHHHHHHHHHH---Hhh-cCC-CCCchHHHHHHHHHHHHHcCCccccchhhHHHHHHHHH
Confidence 55555555433 2234577888888842 333 221 1235655555443333333333322222 347778888
Q ss_pred cc--cCCCCCeeE
Q 038458 217 FS--KFDWDNFCL 227 (347)
Q Consensus 217 Y~--~Fd~~~~~i 227 (347)
.+ .|--...||
T Consensus 262 laAG~FlPgS~gi 274 (362)
T KOG3793|consen 262 LAAGLFLPGSVGI 274 (362)
T ss_pred HHhcccCCCCCCc
Confidence 76 665544443
No 25
>KOG2054 consensus Nucleolar RNA-associated protein (NRAP) [Function unknown]
Probab=96.68 E-value=0.013 Score=62.74 Aligned_cols=145 Identities=19% Similarity=0.242 Sum_probs=99.1
Q ss_pred HHHHHhccChhhHHHHHHHHHHHHHhhcccCCCCCCCcHHHHHHHHHHHHHhCc-CCCCChHHHHHHHHhccccCCCCCe
Q 038458 147 EVDHLINENHLFKRSIILIKAWCYYESRILGGHHGLISSYALVTLVLYIFHVFN-GSFAGPLEVLYRFLEFFSKFDWDNF 225 (347)
Q Consensus 147 ~i~~~~~~~p~~r~L~~~lK~Wa~~~~r~ln~~~GglsSYal~lMvi~fLQ~~~-~~~~~p~~lL~~Ff~~Y~~Fd~~~~ 225 (347)
.+.+-....+.++..+.++|.|+ .+|-++-..||+|.+-++.+|++.+.... ....+..+++..-++|.++.|++..
T Consensus 299 ~L~K~~s~~~~f~da~~Llk~Wl--rqRs~~~~~~gfg~f~~s~lvv~L~s~~ki~~~~S~yqvfR~vl~flat~dlt~~ 376 (1121)
T KOG2054|consen 299 LLSKTLSSAKGFKDALALLKVWL--RQRSLDIGQGGFGGFLLSALVVYLVSTRKIHTTLSAYQVFRSVLQFLATTDLTVN 376 (1121)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHH--HhhhhhcccCcchHHHHHHHHHHHHhcCchhhcchHHHHHHHHHHHHhhhhhhcc
Confidence 34445566788999999999997 88877668899999999988887665431 1123457889999999999999999
Q ss_pred eEEeeCCcccCCCCCccCCCCCCCCCcccccHhHHHHHHhhcCCCCCCCCCCCCCccCcceEEeCCCCCCCCcccccCcc
Q 038458 226 CLSLWGPVPISLLPDVTAEPPRKDGGVLLLSKSFLDSCRYAYADFPGGQENQGQPFVSKHFNVIDPLRVNNNLGRSVSKG 305 (347)
Q Consensus 226 ~isi~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~IeDPf~~~~N~~rsv~~~ 305 (347)
+|+... -+ .+.+.. ..|. ++ ..++..| +....|++-++...
T Consensus 377 ~~~l~~-~~-~s~~~~---------------~~f~----e~-----------------~~~~f~D-~s~~~NLc~~mt~s 417 (1121)
T KOG2054|consen 377 GISLVP-SS-PSLPAL---------------ADFH----EG-----------------QLVTFID-SSGHLNLCANMTAS 417 (1121)
T ss_pred ceEecc-CC-CCchhh---------------hhhh----hc-----------------ceeeEec-cCCcchhhhhccHH
Confidence 988642 11 111100 0010 00 0123333 23458899999888
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCchH
Q 038458 306 NFFRIRTAFTFRAKGLARLLDCPNEDL 332 (347)
Q Consensus 306 ~~~~I~~~F~~a~~~l~~~~~~~~~~~ 332 (347)
++++++++.+.+++.|.+.-..+.+.|
T Consensus 418 ~y~~~q~ea~ltl~lL~~~~~~~F~~I 444 (1121)
T KOG2054|consen 418 TYEQVQEEARLTLMLLDSRADDGFSLI 444 (1121)
T ss_pred HHHHHHHHHHHHHHHHhhhhhcCccee
Confidence 999999999999999986654444433
No 26
>PRK02098 phosphoribosyl-dephospho-CoA transferase; Provisional
Probab=95.20 E-value=0.047 Score=49.81 Aligned_cols=41 Identities=17% Similarity=0.061 Sum_probs=32.5
Q ss_pred HHHHHHHHHchhCCceEEEecccc----cCC--CCCCCCcceeeecCC
Q 038458 38 VAAYVRRLIIQCFPCQVFTFGSVP----LKT--YLPDRDIDLGAFSDD 79 (347)
Q Consensus 38 vi~~l~~~i~~~~p~~v~~fGS~~----tgl--~lp~SDiDl~v~~~~ 79 (347)
.++.|...... ++..+.+|||.+ ||+ -.++||||+.+-.++
T Consensus 108 ~l~~l~~~~~~-~g~~~gv~GS~a~qlaTG~~~l~~~SDLDLLi~~~~ 154 (221)
T PRK02098 108 TLRALLALAAA-HGVDCRVFGSLAWQALTGLPYLSASSDLDLLWPLPA 154 (221)
T ss_pred HHHHHHHHHHh-CCCcEEEeeehHHHHhhCCcccCCCCCeeEEEecCC
Confidence 33444444433 778999999999 999 789999999998875
No 27
>TIGR03135 malonate_mdcG holo-ACP synthase, malonate decarboxylase-specific. Malonate decarboxylase, like citrate lyase, has a unique acyl carrier protein subunit with a prosthetic group derived from, and distinct from, coenzyme A. Members of this protein family are the phosphoribosyl-dephospho-CoA transferase specific to the malonate decarboxylase system. This enzyme can also be designated holo-ACP synthase (2.7.7.61). The corresponding component of the citrate lyase system, CitX, shows little or no sequence similarity to this family.
Probab=94.99 E-value=0.06 Score=48.49 Aligned_cols=41 Identities=15% Similarity=0.067 Sum_probs=32.2
Q ss_pred HHHHHHHHHchhCCceEEEeccc----ccCC--CCCCCCcceeeecCC
Q 038458 38 VAAYVRRLIIQCFPCQVFTFGSV----PLKT--YLPDRDIDLGAFSDD 79 (347)
Q Consensus 38 vi~~l~~~i~~~~p~~v~~fGS~----~tgl--~lp~SDiDl~v~~~~ 79 (347)
.++.+..... .++...-+|||. +||+ -.++||||+.+..++
T Consensus 96 ~l~~l~~~~~-~~~~~~gv~GS~~~qlaTg~~~~~~~SDLDLLi~~~~ 142 (202)
T TIGR03135 96 ALRALDALLD-ALGVPWGVYGSAGWQLLTGLPYLHASSDLDLLLRAPS 142 (202)
T ss_pred HHHHHHHHHH-hCCCcEEEecchHHHHhcCCcccCCCCCeeEEEcCCC
Confidence 3444444333 377899999999 9999 789999999999885
No 28
>PF14091 DUF4269: Domain of unknown function (DUF4269)
Probab=94.48 E-value=0.85 Score=39.06 Aligned_cols=105 Identities=18% Similarity=0.312 Sum_probs=61.5
Q ss_pred ceEEEecccccCCCCCCCCcceeeecCCCcchhhHHHHHHHHHhhccccccccceeeeEEEe-eecceEEEEeecCeeEE
Q 038458 52 CQVFTFGSVPLKTYLPDRDIDLGAFSDDQTLKDTWAHLVRDMLENEEKNEHAEFRVKEVQYI-QAEVKIIKCLVDNFVVD 130 (347)
Q Consensus 52 ~~v~~fGS~~tgl~lp~SDiDl~v~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~I-~ArVPIIK~~~~~i~vD 130 (347)
..-..-|...-|+..|+|||||++..++ .+.+.+.+.+...+.. .|.++. ..| +-..=+..|...|..+-
T Consensus 16 ~~PiL~GTiPi~Idi~~SDLDIic~~~d---~~~F~~~l~~~f~~~~-----~f~~~~-~~i~~~~~~~~~F~~~~~~~E 86 (152)
T PF14091_consen 16 YDPILVGTIPIGIDIPGSDLDIICEVPD---PEAFEQLLQSLFGQFE-----GFTIKE-KTIRGEPSIVANFRYEGFPFE 86 (152)
T ss_pred CCCEEecccccccCCCCCCccEEEEeCC---HHHHHHHHHHHhccCC-----Cceeee-ceeCCceeEEEEEEECCceEE
Confidence 4566789999999999999999999996 3445555554444322 233332 122 22333445556888888
Q ss_pred EeecCCC-ccchhhhHH--HHHHHhccC-hhhHHHHHHHH
Q 038458 131 IAFNQLG-GLCTLCFLD--EVDHLINEN-HLFKRSIILIK 166 (347)
Q Consensus 131 Is~n~~~-g~~~s~~l~--~i~~~~~~~-p~~r~L~~~lK 166 (347)
|--.+.. .-.| .+.+ .-.+.+... |.+|.=++-+|
T Consensus 87 iF~Q~~Pv~~Qn-ayrHm~iE~rLL~~~g~~~r~~Ii~LK 125 (152)
T PF14091_consen 87 IFGQPIPVEEQN-AYRHMLIEHRLLELHGPSFREEIIELK 125 (152)
T ss_pred EeecCCChhhHH-HHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 8553221 1122 1221 112344444 88888777777
No 29
>PF07528 DZF: DZF domain; InterPro: IPR006561 This domain is found in proteins containing the double-stranded RNA-binding motif, DSRM (IPR001159 from INTERPRO), or the zinc finger domain C2H2 (IPR007087 from INTERPRO). This domain is found exclusively in the metazoa.
Probab=93.46 E-value=2.1 Score=39.82 Aligned_cols=153 Identities=18% Similarity=0.165 Sum_probs=80.1
Q ss_pred ecccccCCCCCC-CCcceeeecCCCcchhhHHHHHHHHHhhcccccccc---ceeeeEEEe-eecceEEEEee--c--Ce
Q 038458 57 FGSVPLKTYLPD-RDIDLGAFSDDQTLKDTWAHLVRDMLENEEKNEHAE---FRVKEVQYI-QAEVKIIKCLV--D--NF 127 (347)
Q Consensus 57 fGS~~tgl~lp~-SDiDl~v~~~~~~~~~~~~~~l~~~L~~~~~~~~~~---~~~~~v~~I-~ArVPIIK~~~--~--~i 127 (347)
.||++.|+.+.+ -++|+||++..... .+.++.+.+.|...-+....+ ..++-..++ +.+.|.+.... + .+
T Consensus 2 VG~~aKGllL~Gd~~~eLVVlck~kPT-~~lL~~v~~~L~~~L~~~~~~ev~~~~e~~~~~~~~~~~~~~~~~~lts~~~ 80 (248)
T PF07528_consen 2 VGSFAKGLLLKGDNDVELVVLCKEKPT-KELLNRVAEKLPEQLKKVTPEEVTNSVEAAIIIDSCKEPKLEVGIDLTSPVM 80 (248)
T ss_pred cceecCCceecCCceEeEEEEcCCCCc-HHHHHHHHHHHHHHHhhhCccccccchhhhhhhcccccccceeeEEecCCce
Confidence 499999999974 57899999986433 334444444443321111111 001111112 34445555442 2 23
Q ss_pred eEEEeec----CC------------------CccchhhhHHHHHHHhccChhhHHHHHHHHHHHHHhhcccCCCCCCCcH
Q 038458 128 VVDIAFN----QL------------------GGLCTLCFLDEVDHLINENHLFKRSIILIKAWCYYESRILGGHHGLISS 185 (347)
Q Consensus 128 ~vDIs~n----~~------------------~g~~~s~~l~~i~~~~~~~p~~r~L~~~lK~Wa~~~~r~ln~~~GglsS 185 (347)
.+.+.+. +. ..++.+ ++++..+..-+..+.++.++|.. .+|. +..+.|++
T Consensus 81 r~~~~~~~~~~~~~~~dp~~~Ld~~~cl~aLaalRha---kWFq~~a~~l~s~~~viRIlrDl---~~R~--p~w~~L~~ 152 (248)
T PF07528_consen 81 RVRVLITTIPENLSKLDPEDHLDRKKCLSALAALRHA---KWFQARANGLQSCVIVIRILRDL---RQRV--PTWQPLSS 152 (248)
T ss_pred EEEEeccccCccccccChhhcCCHHHHHHHHHHHHHh---HHHHHHhccCCCcceehhhHHHH---HHhC--CCCCCCCh
Confidence 3333321 11 111112 22333444445677888888853 3453 34667899
Q ss_pred HHHHHHHHHHHHhCc-CCCCChHHHHHHHHhccc
Q 038458 186 YALVTLVLYIFHVFN-GSFAGPLEVLYRFLEFFS 218 (347)
Q Consensus 186 Yal~lMvi~fLQ~~~-~~~~~p~~lL~~Ff~~Y~ 218 (347)
+++=+++-+-+-..+ ....+|++.+.++|+.-+
T Consensus 153 W~leLL~~~~i~~~~~~~~l~~g~a~RRvle~la 186 (248)
T PF07528_consen 153 WALELLVEKAISNNSSRQPLSPGDAFRRVLECLA 186 (248)
T ss_pred hHHHHHHHHHeeeCCCCCCCChHHHHHHHHHHHh
Confidence 998887776666332 223467888888887543
No 30
>PF03813 Nrap: Nrap protein; InterPro: IPR005554 Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localized in the nucleolus []. Nrap is a large nucleolar protein (of more than 1000 amino acids). Nrap appears to be associated with ribosome biogenesis by interacting with pre-rRNA primary transcript [].
Probab=92.37 E-value=3.3 Score=45.98 Aligned_cols=145 Identities=21% Similarity=0.221 Sum_probs=88.8
Q ss_pred HHHHhccChhhHHHHHHHHHHHHHhhcccCCCCCCCcHHHHHHHHHHHHHhCcCCC---CChHHHHHHHHhccccCCCCC
Q 038458 148 VDHLINENHLFKRSIILIKAWCYYESRILGGHHGLISSYALVTLVLYIFHVFNGSF---AGPLEVLYRFLEFFSKFDWDN 224 (347)
Q Consensus 148 i~~~~~~~p~~r~L~~~lK~Wa~~~~r~ln~~~GglsSYal~lMvi~fLQ~~~~~~---~~p~~lL~~Ff~~Y~~Fd~~~ 224 (347)
+.....++|.+.+.+.++|+|. .++.+ .|.++.=++=|||++..-... +. .+|.--+++|+++-++|||..
T Consensus 675 i~~l~~~~p~fs~tvRL~KrW~--~shlL---s~~i~~E~vELlva~vfl~~~-p~~~P~S~~~GFlRfL~lLs~~dW~~ 748 (972)
T PF03813_consen 675 IHGLHTRFPSFSPTVRLAKRWL--SSHLL---SGHISEEAVELLVASVFLSPA-PWSPPSSPQTGFLRFLHLLSTWDWRE 748 (972)
T ss_pred HHHHHhhCCchhHHHHHHHHHH--HhccC---cccCCHHHHHHHHHHHhcCCC-CCCCCCCHhHHHHHHHHHHHhCCCCc
Confidence 4456678999999999999996 67776 567899999999888775432 22 233445778888888999987
Q ss_pred eeEEeeCCcccCCCCCccCCCCCCCCCcccccHhHHHHHHhhcCCCCCCCCCCCCCccCcceEEeCCCCCCCCccc--cc
Q 038458 225 FCLSLWGPVPISLLPDVTAEPPRKDGGVLLLSKSFLDSCRYAYADFPGGQENQGQPFVSKHFNVIDPLRVNNNLGR--SV 302 (347)
Q Consensus 225 ~~isi~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~IeDPf~~~~N~~r--sv 302 (347)
.-+=+.- +++ ++.+-.......|..... .........|+|-.|.|+..-.-. +-
T Consensus 749 ~PLiVd~------------------~~~--l~~~~~~~i~~~f~~~R~----~dp~~~~p~~~IaT~~D~~g~~wT~~~P 804 (972)
T PF03813_consen 749 EPLIVDF------------------NNE--LTEEDRAEIETNFDAWRK----IDPAMNLPAMFIATPYDPEGSLWTRNGP 804 (972)
T ss_pred CCEEEEC------------------CCC--CCHHHHHHHHHHHHHhhc----cCccccCCcEEEEeCCCCCCCEeECCCC
Confidence 6443310 011 121111122222211100 001112346999999998554322 33
Q ss_pred CcchHHHHHHHHHHHHHHHH
Q 038458 303 SKGNFFRIRTAFTFRAKGLA 322 (347)
Q Consensus 303 ~~~~~~~I~~~F~~a~~~l~ 322 (347)
++..+.||..--+.|.+.+.
T Consensus 805 s~~v~~Rl~~LAk~sl~~l~ 824 (972)
T PF03813_consen 805 SKVVAKRLTALAKASLKLLE 824 (972)
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 44557888887777777776
No 31
>PF14792 DNA_pol_B_palm: DNA polymerase beta palm ; PDB: 1RZT_A 3PML_A 2PFN_A 3HX0_K 3HWT_A 2GWS_E 2BCQ_A 3UPQ_A 2BCS_A 3UQ2_A ....
Probab=91.59 E-value=0.36 Score=39.23 Aligned_cols=60 Identities=18% Similarity=0.147 Sum_probs=43.0
Q ss_pred HHHHHHHHHHchhCC-ceEEEecccccCCCCCCCCcceeeecCCCcch----hhHHHHHHHHHhhc
Q 038458 37 AVAAYVRRLIIQCFP-CQVFTFGSVPLKTYLPDRDIDLGAFSDDQTLK----DTWAHLVRDMLENE 97 (347)
Q Consensus 37 ~vi~~l~~~i~~~~p-~~v~~fGS~~tgl~lp~SDiDl~v~~~~~~~~----~~~~~~l~~~L~~~ 97 (347)
.+-+.|++.++++-| +.+.+-|||.=|-.+.+ |||+.+..++.... ..++..+...|++.
T Consensus 9 ~i~~~V~~~~~~i~p~~~v~i~GSyRRGK~~~g-DiDiLIt~~~~~~~~~~~~~~l~~lv~~L~~~ 73 (112)
T PF14792_consen 9 EIEEIVKEALEKIDPGLEVEICGSYRRGKETSG-DIDILITHPDPSSVSKKLEGLLEKLVKRLEEK 73 (112)
T ss_dssp HHHHHHHHHHHCCSTT-EEEEEHHHHTT-SEES-SEEEEEEETTCSTTTCSTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCcEEEEccccccCCCcCC-CeEEEEeCCCcCcchhhHHHHHHHHHHHHHhC
Confidence 345556667777788 99999999999988755 99999999985432 34666666666653
No 32
>PF10127 Nuc-transf: Predicted nucleotidyltransferase; InterPro: IPR018775 Proteins in this entry are predicted to catalyse the transfer of nucleotide residues from nucleoside diphosphates or triphosphates into dimer or polymer forms.
Probab=84.47 E-value=0.81 Score=42.28 Aligned_cols=45 Identities=16% Similarity=0.120 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHchh-CC-ceEEEecccccCCCCCCCCcceeeecCC
Q 038458 35 RNAVAAYVRRLIIQC-FP-CQVFTFGSVPLKTYLPDRDIDLGAFSDD 79 (347)
Q Consensus 35 R~~vi~~l~~~i~~~-~p-~~v~~fGS~~tgl~lp~SDiDl~v~~~~ 79 (347)
|..|.+.++.+-++. .. .-....||.+-|+..|+||.|+-.+.-.
T Consensus 2 ~~~i~~~l~~ie~~~~~~il~~~~sGS~a~G~~s~dSD~D~r~vy~~ 48 (247)
T PF10127_consen 2 RETIQEKLNEIEKEHNVKILYACESGSRAYGFASPDSDYDVRGVYIP 48 (247)
T ss_pred chHHHHHHHHHHHhcCCcEEEEecccccccCCCCCCcCcccchhccC
Confidence 455667777766553 22 6777889999999999999999887764
No 33
>cd05401 NT_GlnE_GlnD_like Nucleotidyltransferase (NT) domain of Escherichia coli adenylyltransferase (GlnE), Escherichia coli uridylyl transferase (GlnD), and similar proteins. Escherichia coli GlnD and -E participate in the Glutamine synthetase (GS)/Glutamate synthase (GOGAT) pathway for the assimilation of ammonium nitrogen. In nitrogen sufficiency, GlnE adenylates GS, reducing GS activity; when nitrogen is limiting, GlnE deadenylates GS-AMP, restoring GS activity. When nitrogen is limiting, GlnD uridylylates the nitrogen regulatory protein PII to PII-UTP, and in nitrogen sufficiency, it removes the modifying groups. The activity of Escherichia coli GlnE is modulated by PII-proteins. PII-UMP promotes GlnE deadenylation activity, and PII promotes GlnE adenylation activity. Escherichia coli GlnE has two separate NT domains. The N-terminal NT domain catalyzes the deadenylylation of GS, and the C-terminal NT domain the adenylylation reaction. The majority of proteins in this family conta
Probab=84.42 E-value=4.3 Score=35.03 Aligned_cols=28 Identities=29% Similarity=0.339 Sum_probs=26.7
Q ss_pred ceEEEecccccCCCCCCCCcceeeecCC
Q 038458 52 CQVFTFGSVPLKTYLPDRDIDLGAFSDD 79 (347)
Q Consensus 52 ~~v~~fGS~~tgl~lp~SDiDl~v~~~~ 79 (347)
..+..+||+..|=-.+.||+|+.++.++
T Consensus 56 ~~~la~Gs~GR~E~~~~SD~D~~~v~~~ 83 (172)
T cd05401 56 FALLALGSYGRGELNPSSDQDLLLLYDD 83 (172)
T ss_pred EEEEEeCCcccCCcCCCcCcceEEEeCC
Confidence 7899999999999999999999999986
No 34
>PF10620 MdcG: Phosphoribosyl-dephospho-CoA transferase MdcG; InterPro: IPR017557 Malonate decarboxylase, like citrate lyase, has a unique acyl carrier protein subunit with a prosthetic group derived from, and distinct from, coenzyme A. Members of this protein family are the phosphoribosyl-dephospho-CoA transferase specific to the malonate decarboxylase system. This enzyme can also be designated holo-ACP synthase (2.7.7.61 from EC). The corresponding component of the citrate lyase system, CitX, shows little or no sequence similarity to this family.; GO: 0016779 nucleotidyltransferase activity
Probab=83.51 E-value=1.7 Score=39.50 Aligned_cols=43 Identities=19% Similarity=0.193 Sum_probs=33.2
Q ss_pred HHHHHHHHHHchhCCceEEEecccc----cCC--CCCCCCcceeeecCCC
Q 038458 37 AVAAYVRRLIIQCFPCQVFTFGSVP----LKT--YLPDRDIDLGAFSDDQ 80 (347)
Q Consensus 37 ~vi~~l~~~i~~~~p~~v~~fGS~~----tgl--~lp~SDiDl~v~~~~~ 80 (347)
..+..++... ...+...-+|||.. ||+ -.++|||||.+..++.
T Consensus 103 ~~l~~l~~~~-~~~~~~~gv~GS~g~qlaTGl~~l~~~SDLDLli~~~~~ 151 (213)
T PF10620_consen 103 PALQALRALL-DALGLRWGVYGSLGFQLATGLPYLHADSDLDLLIRPPSP 151 (213)
T ss_pred HHHHHHHHHH-HHcCCCEEEehhHHHHHHhCccccCCCCCceEEEeCCCh
Confidence 4566666666 56789999999975 565 3479999999999874
No 35
>KOG2534 consensus DNA polymerase IV (family X) [Replication, recombination and repair]
Probab=79.17 E-value=6.8 Score=37.53 Aligned_cols=60 Identities=20% Similarity=0.151 Sum_probs=43.9
Q ss_pred HHHHHHHHHHchhCC-ceEEEecccccCCCCCCCCcceeeecCCCcc-hhhHHHHHHHHHhhc
Q 038458 37 AVAAYVRRLIIQCFP-CQVFTFGSVPLKTYLPDRDIDLGAFSDDQTL-KDTWAHLVRDMLENE 97 (347)
Q Consensus 37 ~vi~~l~~~i~~~~p-~~v~~fGS~~tgl~lp~SDiDl~v~~~~~~~-~~~~~~~l~~~L~~~ 97 (347)
.+.+.|++.+....| +.|.+-|||.-|-. ...|||+.+..|.... .......+...+++.
T Consensus 156 ~i~~~V~~av~~~~p~~~vt~~GsfRRGk~-~ggDvD~LithP~~~s~~~~~~~~l~~~le~~ 217 (353)
T KOG2534|consen 156 AIQQTVQEAVWAFDPEAFVTVTGSFRRGKK-MGGDVDFLITHPGSTSTEAKLLQLLMILLEKK 217 (353)
T ss_pred HHHHHHHHHHhhcCCCcEEEEeccccCCcc-cCCCeeEEEeCCCCCchhhhHHHHHHHHHHhc
Confidence 455666667777778 99999999999954 5889999999997443 334555666666654
No 36
>PRK01293 phosphoribosyl-dephospho-CoA transferase; Provisional
Probab=78.14 E-value=5.3 Score=36.12 Aligned_cols=41 Identities=17% Similarity=0.042 Sum_probs=29.6
Q ss_pred HHHHHHHHHchhCCceEEEecccc----cCC--CCCCCCcceeeecCC
Q 038458 38 VAAYVRRLIIQCFPCQVFTFGSVP----LKT--YLPDRDIDLGAFSDD 79 (347)
Q Consensus 38 vi~~l~~~i~~~~p~~v~~fGS~~----tgl--~lp~SDiDl~v~~~~ 79 (347)
.+..++..... ++...-+|||.. ||+ ..++||||+++..+.
T Consensus 97 al~~l~~~~~~-~~~~wgv~GS~g~qlaTGl~~l~~~SDLDLlir~~~ 143 (207)
T PRK01293 97 ALQALAALLDA-LGLAWGVTGSAGFELATGIPVLHADSDLDLLIRAPQ 143 (207)
T ss_pred HHHHHHHHHHh-CCCceeeehhHHHHHhhCCccccCCCCccEeecCCC
Confidence 34444444433 578899999976 665 347999999998875
No 37
>COG1665 Predicted nucleotidyltransferase [General function prediction only]
Probab=77.93 E-value=5.4 Score=37.40 Aligned_cols=29 Identities=28% Similarity=0.408 Sum_probs=25.9
Q ss_pred CC-ceEEEecccccCCCCCCCCcceeeecC
Q 038458 50 FP-CQVFTFGSVPLKTYLPDRDIDLGAFSD 78 (347)
Q Consensus 50 ~p-~~v~~fGS~~tgl~lp~SDiDl~v~~~ 78 (347)
.| -++=+-||...||+-.+||||++|.++
T Consensus 119 Vp~~~mGVTGSiL~gl~~~nSDIDfVVYG~ 148 (315)
T COG1665 119 VPVNSMGVTGSILLGLYDENSDIDFVVYGQ 148 (315)
T ss_pred CchhhccccccccccccCCCCCceEEEEcH
Confidence 45 677788999999999999999999994
No 38
>PF03445 DUF294: Putative nucleotidyltransferase DUF294; InterPro: IPR005105 This domain is found associated with an N-terminal cyclic nucleotide-binding domain (IPR000595 from INTERPRO) and two CBS domains (IPR000644 from INTERPRO). This domain, normally represents the C-terminal region, is uncharacterised; however, it seems to be similar to the nucleotidyltransferase domain (IPR002934 from INTERPRO), conserving the DXD motif, which strongly suggests that proteins containing this domain are also nucleotidyltransferases.; GO: 0008773 [protein-PII] uridylyltransferase activity
Probab=77.31 E-value=9.4 Score=32.01 Aligned_cols=28 Identities=18% Similarity=0.094 Sum_probs=27.1
Q ss_pred ceEEEecccccCCCCCCCCcceeeecCC
Q 038458 52 CQVFTFGSVPLKTYLPDRDIDLGAFSDD 79 (347)
Q Consensus 52 ~~v~~fGS~~tgl~lp~SDiDl~v~~~~ 79 (347)
..+..+||..=+=.+|.||+|..++..+
T Consensus 50 ~a~lalGS~GR~E~~~~sDqD~alv~~d 77 (138)
T PF03445_consen 50 FAWLALGSYGRREQTLYSDQDNALVFED 77 (138)
T ss_pred EEEEEECcccccCCCcCccccceeeecC
Confidence 8899999999999999999999999997
No 39
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=77.18 E-value=7.8 Score=41.40 Aligned_cols=48 Identities=21% Similarity=0.250 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHchh-CC--ceEEEecccccCCCCCCCCcceeeecCC
Q 038458 32 EERRNAVAAYVRRLIIQC-FP--CQVFTFGSVPLKTYLPDRDIDLGAFSDD 79 (347)
Q Consensus 32 ~~~R~~vi~~l~~~i~~~-~p--~~v~~fGS~~tgl~lp~SDiDl~v~~~~ 79 (347)
.+.|+.+.+.-..+++.. +| ..+...|+|.-|=-.|.|||||.++.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~aLvAvGGYGR~EL~P~SDIDLLiL~~~ 55 (693)
T PRK00227 5 AQLREDAEASALALLGSLQLPPGTALAATGSLARREMTPYSDLDLILLHPP 55 (693)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCeEEEEeccccccCcCCCcCceEEEEeCC
Confidence 456777777777777654 44 7999999999999999999999999985
No 40
>PHA02603 nrdC.11 hypothetical protein; Provisional
Probab=75.56 E-value=1.6 Score=42.14 Aligned_cols=25 Identities=28% Similarity=0.238 Sum_probs=21.3
Q ss_pred EEEecccccCCCCCCCCcceeeecC
Q 038458 54 VFTFGSVPLKTYLPDRDIDLGAFSD 78 (347)
Q Consensus 54 v~~fGS~~tgl~lp~SDiDl~v~~~ 78 (347)
...+||.+-|+.+|+||+|+-=+.-
T Consensus 6 ~~~~GShaYG~~tp~SD~D~rGV~l 30 (330)
T PHA02603 6 KGLFGSHLYGTSTPESDVDYKGIFL 30 (330)
T ss_pred EEecccceeCCCCCCcccccceeec
Confidence 5679999999999999999865554
No 41
>cd00141 NT_POLXc Nucleotidyltransferase (NT) domain of family X DNA Polymerases. X family polymerases fill in short gaps during DNA repair. They are relatively inaccurate enzymes and play roles in base excision repair, in non-homologous end joining (NHEJ) which acts mainly to repair damage due to ionizing radiation, and in V(D)J recombination. This family includes eukaryotic Pol beta, Pol lambda, Pol mu, and terminal deoxyribonucleotidyl transferase (TdT). Pol beta and Pol lambda are primarily DNA template-dependent polymerases. TdT is a DNA template-independent polymerase. Pol mu has both template dependent and template independent activities. This subgroup belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, coordinate two divalent metal cations involved in a two-metal ion mechanism of nucleotide addition. These three carboxylate residues are fairly well conserved in this
Probab=74.98 E-value=46 Score=31.83 Aligned_cols=57 Identities=25% Similarity=0.152 Sum_probs=37.6
Q ss_pred HHHHHHHHHchhCC-ceEEEecccccCCCCCCCCcceeeecCCCcchhhHHHHHHHHHhh
Q 038458 38 VAAYVRRLIIQCFP-CQVFTFGSVPLKTYLPDRDIDLGAFSDDQTLKDTWAHLVRDMLEN 96 (347)
Q Consensus 38 vi~~l~~~i~~~~p-~~v~~fGS~~tgl~lp~SDiDl~v~~~~~~~~~~~~~~l~~~L~~ 96 (347)
+.+.|...++..-| ++|.+-||+.=|..+ .+|||+++..++... ......+...|..
T Consensus 146 ~a~~i~~~l~~~~~~~~v~i~GS~RRg~et-~gDiDilv~~~~~~~-~~~~~~v~~~l~~ 203 (307)
T cd00141 146 IAEIIKEALREVDPVLQVEIAGSYRRGKET-VGDIDILVTHPDATS-RGLLEKVVDALVE 203 (307)
T ss_pred HHHHHHHHHHhCCCceEEEEcccccCCCCc-cCCEEEEEecCCccc-cccHHHHHHHHHh
Confidence 34555555655556 999999999988876 579999999886322 2223344444443
No 42
>COG3541 Predicted nucleotidyltransferase [General function prediction only]
Probab=67.42 E-value=2.8 Score=38.58 Aligned_cols=25 Identities=24% Similarity=0.030 Sum_probs=20.9
Q ss_pred EEecccccCCCCCCCCcceeeecCC
Q 038458 55 FTFGSVPLKTYLPDRDIDLGAFSDD 79 (347)
Q Consensus 55 ~~fGS~~tgl~lp~SDiDl~v~~~~ 79 (347)
..=||.+-|+.-|+||+|+--+.-.
T Consensus 14 ~esGS~~yGf~spdSDyDvR~V~i~ 38 (248)
T COG3541 14 GESGSHLYGFPSPDSDYDVRGVHIL 38 (248)
T ss_pred EcccccccCCCCCCCccceeeEEeC
Confidence 3349999999999999999777654
No 43
>KOG2054 consensus Nucleolar RNA-associated protein (NRAP) [Function unknown]
Probab=66.06 E-value=11 Score=41.34 Aligned_cols=71 Identities=25% Similarity=0.415 Sum_probs=51.7
Q ss_pred HHHhccChhhHHHHHHHHHHHHHhhcccCCCCCCCcHHHHHHHHHHHHHhCcCCCCChHH---HHHHHHhccccCCCCCe
Q 038458 149 DHLINENHLFKRSIILIKAWCYYESRILGGHHGLISSYALVTLVLYIFHVFNGSFAGPLE---VLYRFLEFFSKFDWDNF 225 (347)
Q Consensus 149 ~~~~~~~p~~r~L~~~lK~Wa~~~~r~ln~~~GglsSYal~lMvi~fLQ~~~~~~~~p~~---lL~~Ff~~Y~~Fd~~~~ 225 (347)
....+.+|.+-+.+.+.|+|. .++.+. ||+.=-++=|+|++..+... +...|+. =+.+|+++-++|||...
T Consensus 812 ~~l~qsh~~ys~vvrLaKrWl--~shLL~---~h~~De~iELLva~lf~~p~-p~~~psS~~~gFlRfL~llS~~dW~~~ 885 (1121)
T KOG2054|consen 812 QSLSQSHPFYSSVVRLAKRWL--GSHLLS---GHHLDEAIELLVAALFLKPG-PLVPPSSPENGFLRFLSLLSTWDWKFD 885 (1121)
T ss_pred HHHhhcccchhHHHHHHHHHH--HHHhhc---cchHHHHHHHHHHHHhcCcc-CCCCCCCcchhHHHHHHHHhcCcccCC
Confidence 445667899999999999996 566654 66667788888888777643 2233332 47778888889999765
No 44
>PF09970 DUF2204: Nucleotidyl transferase of unknown function (DUF2204); InterPro: IPR018700 This family of hypothetical prokaryotic proteins has no known function.
Probab=64.87 E-value=19 Score=31.64 Aligned_cols=80 Identities=14% Similarity=0.211 Sum_probs=46.0
Q ss_pred CceEEEeccccc----CCCCCCCCcceeeecCCCcchhhHHHHHHHHHhhccccccccceeeeEEEeeecceEEEEeecC
Q 038458 51 PCQVFTFGSVPL----KTYLPDRDIDLGAFSDDQTLKDTWAHLVRDMLENEEKNEHAEFRVKEVQYIQAEVKIIKCLVDN 126 (347)
Q Consensus 51 p~~v~~fGS~~t----gl~lp~SDiDl~v~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~I~ArVPIIK~~~~~ 126 (347)
+..+.+.|+++. |.--.+.|||+.+..++....... +.++.+..+... .... ....-.++++...+
T Consensus 16 gv~~~ivGG~av~l~~g~~r~T~DIDlfi~~~~~~~~~~~---~~~~a~~~g~~~----~~~~---~~~~~~~~~~~~~~ 85 (181)
T PF09970_consen 16 GVEYVIVGGAAVNLAYGRRRTTKDIDLFIENPSPNLEADA---LREVAEENGWDL----GWTD---FGTPRYVVKVGGED 85 (181)
T ss_pred CCeEEEECHHHHHHHhCCCCCCCCeEEEeCCCchHHHHHH---HHHHHHHcCCCc----Cccc---cCCCceEEEeCCCC
Confidence 468889999874 555678999999987753222222 233333322100 1111 12333445555688
Q ss_pred eeEEEeecCCCccch
Q 038458 127 FVVDIAFNQLGGLCT 141 (347)
Q Consensus 127 i~vDIs~n~~~g~~~ 141 (347)
+.+|+ +.|..|+.-
T Consensus 86 v~IDl-~~ni~~~~v 99 (181)
T PF09970_consen 86 VRIDL-LENIGDFYV 99 (181)
T ss_pred eEEEc-hhccCCccc
Confidence 99999 767666654
No 45
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=64.25 E-value=30 Score=37.44 Aligned_cols=29 Identities=24% Similarity=0.243 Sum_probs=26.9
Q ss_pred ceEEEecccccCCCCCCCCcceeeecCCC
Q 038458 52 CQVFTFGSVPLKTYLPDRDIDLGAFSDDQ 80 (347)
Q Consensus 52 ~~v~~fGS~~tgl~lp~SDiDl~v~~~~~ 80 (347)
..+...|.|.-|--.|.||||+.++.+..
T Consensus 67 ~aLvAVGGyGRgEL~P~SDiDlL~L~p~~ 95 (867)
T COG2844 67 LALVAVGGYGRGELHPLSDIDLLLLSPQK 95 (867)
T ss_pred eEEEEeccccccccCCCccceEEEecCCC
Confidence 67899999999999999999999999963
No 46
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=62.23 E-value=30 Score=38.01 Aligned_cols=28 Identities=14% Similarity=0.342 Sum_probs=26.2
Q ss_pred ceEEEecccccCCCCCCCCcceeeecCC
Q 038458 52 CQVFTFGSVPLKTYLPDRDIDLGAFSDD 79 (347)
Q Consensus 52 ~~v~~fGS~~tgl~lp~SDiDl~v~~~~ 79 (347)
..+...|+|.=|=--|.|||||.++.++
T Consensus 57 iaLvAvGGYGR~eL~P~SDIDlliL~~~ 84 (854)
T PRK01759 57 LALIAVGGYGRREMFPLSDLDILILTEQ 84 (854)
T ss_pred eEEEEeCCcccccCCCcccceEEEEeCC
Confidence 5889999999999999999999999985
No 47
>COG2413 Predicted nucleotidyltransferase [General function prediction only]
Probab=60.12 E-value=15 Score=32.92 Aligned_cols=44 Identities=20% Similarity=0.288 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHchhCCceEEEecccccCCCCCCCCcceeeecCC
Q 038458 34 RRNAVAAYVRRLIIQCFPCQVFTFGSVPLKTYLPDRDIDLGAFSDD 79 (347)
Q Consensus 34 ~R~~vi~~l~~~i~~~~p~~v~~fGS~~tgl~lp~SDiDl~v~~~~ 79 (347)
+|+.+.+-++.+. .++..-..|||-+-|=--|+||+|+.|..+-
T Consensus 22 kRe~A~~i~e~l~--~f~ie~~v~gSvarGDV~p~SDvDV~I~~~v 65 (228)
T COG2413 22 KREKARKIMEGLS--DFGIEAVVYGSVARGDVRPGSDVDVAIPEPV 65 (228)
T ss_pred HHHHHHHHHHHHH--HhcchhEEEeeeeccCcCCCCCceEEEecCC
Confidence 3444444444333 2445678899999998889999999999863
No 48
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=56.06 E-value=51 Score=36.50 Aligned_cols=28 Identities=25% Similarity=0.266 Sum_probs=26.3
Q ss_pred ceEEEecccccCCCCCCCCcceeeecCC
Q 038458 52 CQVFTFGSVPLKTYLPDRDIDLGAFSDD 79 (347)
Q Consensus 52 ~~v~~fGS~~tgl~lp~SDiDl~v~~~~ 79 (347)
..|...|++.-|=-.|.|||||.++.++
T Consensus 79 ~alvAvGgyGR~EL~p~SDiDll~l~~~ 106 (895)
T PRK00275 79 IALVAVGGYGRGELHPYSDIDLLILLDS 106 (895)
T ss_pred EEEEEcCCccccCcCCCCCceEEEEecC
Confidence 5899999999999999999999999985
No 49
>PRK05007 PII uridylyl-transferase; Provisional
Probab=55.88 E-value=51 Score=36.40 Aligned_cols=28 Identities=25% Similarity=0.239 Sum_probs=26.4
Q ss_pred ceEEEecccccCCCCCCCCcceeeecCC
Q 038458 52 CQVFTFGSVPLKTYLPDRDIDLGAFSDD 79 (347)
Q Consensus 52 ~~v~~fGS~~tgl~lp~SDiDl~v~~~~ 79 (347)
..+...|+|.-|=-.|.|||||.++.++
T Consensus 81 ~alvAvGgyGR~EL~p~SDiDll~l~~~ 108 (884)
T PRK05007 81 LALVAVGGYGRGELHPLSDIDLLILSRK 108 (884)
T ss_pred eEEEecCCCCCcccCCcccceEEEEeCC
Confidence 5899999999999999999999999985
No 50
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=53.68 E-value=59 Score=35.69 Aligned_cols=28 Identities=25% Similarity=0.274 Sum_probs=26.4
Q ss_pred ceEEEecccccCCCCCCCCcceeeecCC
Q 038458 52 CQVFTFGSVPLKTYLPDRDIDLGAFSDD 79 (347)
Q Consensus 52 ~~v~~fGS~~tgl~lp~SDiDl~v~~~~ 79 (347)
..+...||+.-|=-.|.||||+.++.++
T Consensus 44 ~aliA~GgyGR~El~p~SDiDll~l~~~ 71 (850)
T TIGR01693 44 IALVAVGGYGRGELAPYSDIDLLFLHDG 71 (850)
T ss_pred eEEEEeCCccccCcCCCCCCeEEEEeCC
Confidence 6899999999999999999999999985
No 51
>PRK04374 PII uridylyl-transferase; Provisional
Probab=53.41 E-value=59 Score=35.86 Aligned_cols=28 Identities=18% Similarity=0.339 Sum_probs=26.2
Q ss_pred ceEEEecccccCCCCCCCCcceeeecCC
Q 038458 52 CQVFTFGSVPLKTYLPDRDIDLGAFSDD 79 (347)
Q Consensus 52 ~~v~~fGS~~tgl~lp~SDiDl~v~~~~ 79 (347)
..|...|++.-|=-.|.|||||.++.++
T Consensus 73 ~alvAvGgYGR~EL~p~SDIDLliL~~~ 100 (869)
T PRK04374 73 LSLHAVGGYGRGELFPRSDVDLLVLGET 100 (869)
T ss_pred EEEEEcCCccccccCCcccceEEEEecC
Confidence 4899999999999999999999999985
No 52
>smart00483 POLXc DNA polymerase X family. includes vertebrate polymerase beta and terminal deoxynucleotidyltransferases
Probab=52.77 E-value=46 Score=32.26 Aligned_cols=43 Identities=26% Similarity=0.233 Sum_probs=34.4
Q ss_pred HHHHHHHHHHchhCC-ceEEEecccccCCCCCCCCcceeeecCCC
Q 038458 37 AVAAYVRRLIIQCFP-CQVFTFGSVPLKTYLPDRDIDLGAFSDDQ 80 (347)
Q Consensus 37 ~vi~~l~~~i~~~~p-~~v~~fGS~~tgl~lp~SDiDl~v~~~~~ 80 (347)
.+.+.|...++...| +.|.+-||+.=|..+ .+|||+++..++.
T Consensus 149 ~i~~~i~~~l~~~~~~~~v~i~GSyRRgket-~gDIDili~~~~~ 192 (334)
T smart00483 149 AVEYIVKRAVRKILPDAIVTLTGSFRRGKET-GHDVDFLITSPHP 192 (334)
T ss_pred HHHHHHHHHHHhhCCCcEEEEecccccCCCc-CCCeeEEEecCCc
Confidence 455566666666667 999999999999876 5799999999873
No 53
>PRK03059 PII uridylyl-transferase; Provisional
Probab=47.11 E-value=1.3e+02 Score=33.25 Aligned_cols=28 Identities=21% Similarity=0.317 Sum_probs=26.2
Q ss_pred ceEEEecccccCCCCCCCCcceeeecCC
Q 038458 52 CQVFTFGSVPLKTYLPDRDIDLGAFSDD 79 (347)
Q Consensus 52 ~~v~~fGS~~tgl~lp~SDiDl~v~~~~ 79 (347)
..+...|++.-|=-.|.|||||.++.++
T Consensus 62 ~alvAvGgyGR~EL~p~SDiDll~l~~~ 89 (856)
T PRK03059 62 AALVAVGGYGRGELFPYSDVDLLVLLPD 89 (856)
T ss_pred eEEEEcCCCCCcccCCCCCCEEEEEecC
Confidence 6899999999999999999999999974
No 54
>cd05398 NT_ClassII-CCAase Nucleotidyltransferase (NT) domain of ClassII CCA-adding enzymes. CCA-adding enzymes add the sequence [cytidine(C)-cytidine-adenosine (A)], one nucleotide at a time, onto the 3' end of tRNA, in a template-independent reaction. This Class II group is comprised mainly of eubacterial and eukaryotic enzymes and includes Bacillus stearothermophilus CCAase, Escherichia coli poly(A) polymerase I, human mitochondrial CCAase, and Saccharomyces cerevisiae CCAase (CCA1). CCA-adding enzymes have a single catalytic pocket, which recognizes both ATP and CTP substrates. Included in this subgroup are CC- and A-adding enzymes from various ancient species of bacteria such as Aquifex aeolicus; these enzymes collaborate to add CCA to tRNAs. This family belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, coordinate two divalent metal cations involved in a two-metal io
Probab=42.26 E-value=1.5e+02 Score=24.71 Aligned_cols=69 Identities=16% Similarity=0.275 Sum_probs=41.9
Q ss_pred CCceEEEecccccCC--CCCCCCcceeeecCCCcchhhHHHHHHHHHhhccccccccceeeeEEEeeecceEEEEeecCe
Q 038458 50 FPCQVFTFGSVPLKT--YLPDRDIDLGAFSDDQTLKDTWAHLVRDMLENEEKNEHAEFRVKEVQYIQAEVKIIKCLVDNF 127 (347)
Q Consensus 50 ~p~~v~~fGS~~tgl--~lp~SDiDl~v~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~I~ArVPIIK~~~~~i 127 (347)
.+.++++.|-++=.+ ..|..|||+++.... ..+. .++.+... .+ +.....+-+.+++...|.
T Consensus 15 ~g~~~ylVGG~VRD~Llg~~~~DiDi~v~~~~----~~~~---~~l~~~~~--------~~-~v~~~~~f~t~~v~~~~~ 78 (139)
T cd05398 15 LGYEAYLVGGAVRDLLLGRPPKDIDIATDADG----PEFA---EALFKKIG--------GR-VVGLGEEFGTATVVINGL 78 (139)
T ss_pred cCceEEEECChHHHHHcCCCCCCceEEEeCCC----HHHH---HHHHHhcC--------Cc-EEecCCcccEEEEEECCE
Confidence 468899999888544 447899999998752 1122 22232211 00 001134666677777789
Q ss_pred eEEEeec
Q 038458 128 VVDIAFN 134 (347)
Q Consensus 128 ~vDIs~n 134 (347)
.+||+.-
T Consensus 79 ~~di~~~ 85 (139)
T cd05398 79 TIDVATL 85 (139)
T ss_pred EEEEccc
Confidence 9999863
No 55
>COG1796 POL4 DNA polymerase IV (family X) [DNA replication, recombination, and repair]
Probab=40.01 E-value=1.9e+02 Score=27.91 Aligned_cols=89 Identities=19% Similarity=0.182 Sum_probs=55.2
Q ss_pred HHHHHHHHHchhCC-ceEEEecccccCCCCCCCCcceeeecCCCcchhhHHHHHHHHHhhccccccccceeeeEEEe-ee
Q 038458 38 VAAYVRRLIIQCFP-CQVFTFGSVPLKTYLPDRDIDLGAFSDDQTLKDTWAHLVRDMLENEEKNEHAEFRVKEVQYI-QA 115 (347)
Q Consensus 38 vi~~l~~~i~~~~p-~~v~~fGS~~tgl~lp~SDiDl~v~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~I-~A 115 (347)
+-..+...+.+.-+ .++..-||..-|-.+ .+|||+++....... .+.+.++. . .+..+..- .-
T Consensus 166 ia~ei~~yl~~~~~~~~~~~aGs~RR~ret-v~DiD~~~s~~~~~~------v~~~~~~~-~-------~~~~vi~~G~~ 230 (326)
T COG1796 166 IAQEIEGYLEELTPIIQASIAGSLRRGRET-VGDIDILISTSHPES------VLEELLEM-P-------NVQEVIAKGET 230 (326)
T ss_pred HHHHHHHHHHhccchheeeeccchhhcccc-ccceeeEeccCCcHH------HHHHHhcC-C-------CcceeeecCCc
Confidence 34455555555566 788888999888776 689999999886321 22222222 1 13333223 56
Q ss_pred cceEEEEeecCeeEEEeecCCCccch
Q 038458 116 EVKIIKCLVDNFVVDIAFNQLGGLCT 141 (347)
Q Consensus 116 rVPIIK~~~~~i~vDIs~n~~~g~~~ 141 (347)
+|-.+.-.+.|++||+-+-......+
T Consensus 231 k~s~~~~~~~~~svD~r~v~~e~fGa 256 (326)
T COG1796 231 KVSMLLILDEGTSVDFRVVPPEAFGA 256 (326)
T ss_pred eeeEEEEecCCCeeEEEEcCHHHhhh
Confidence 66666666799999998865544433
No 56
>PF12633 Adenyl_cycl_N: Adenylate cyclase NT domain; InterPro: IPR024685 Adenylate cyclase is the enzyme responsible for the synthesis of cAMP from ATP. On the basis of sequence similarity, it has been proposed that there are three different classes of adenylate cyclases [, ]. Class I cyclases are found in enterobacteria and related Gram-negative bacteria. This entry represents the N-terminal domain of class-I adenylate cyclases.
Probab=38.60 E-value=55 Score=29.54 Aligned_cols=28 Identities=18% Similarity=0.259 Sum_probs=25.8
Q ss_pred ceEEEecccccCCCCCCCCcceeeecCC
Q 038458 52 CQVFTFGSVPLKTYLPDRDIDLGAFSDD 79 (347)
Q Consensus 52 ~~v~~fGS~~tgl~lp~SDiDl~v~~~~ 79 (347)
--|+.-||..|=--.+.||+|+=|+...
T Consensus 98 ~GlY~MGS~gSi~Qs~~SDlDiWvCh~~ 125 (204)
T PF12633_consen 98 LGLYSMGSTGSIGQSSSSDLDIWVCHDS 125 (204)
T ss_pred EEEEecCCCccccCCCCCCCeEEEEcCC
Confidence 6789999999999999999999999886
No 57
>PRK03381 PII uridylyl-transferase; Provisional
Probab=33.33 E-value=1.1e+02 Score=33.20 Aligned_cols=28 Identities=25% Similarity=0.440 Sum_probs=26.3
Q ss_pred ceEEEecccccCCCCCCCCcceeeecCC
Q 038458 52 CQVFTFGSVPLKTYLPDRDIDLGAFSDD 79 (347)
Q Consensus 52 ~~v~~fGS~~tgl~lp~SDiDl~v~~~~ 79 (347)
..+..-|++.-|=-.|.|||||.++.++
T Consensus 58 ~alvAvg~~gr~el~p~SD~Dll~l~~~ 85 (774)
T PRK03381 58 VALVAVGGLGRRELLPYSDLDLVLLHDG 85 (774)
T ss_pred eEEEEeCCcCCcCcCCCCCCeEEEEeCC
Confidence 6899999999999999999999999984
No 58
>PF03296 Pox_polyA_pol: Poxvirus poly(A) polymerase nucleotidyltransferase domain; InterPro: IPR024231 Poly(A) polymerase (2.7.7.19 from EC) catalyses template-independent extension of the 3'-end of a DNA or RNA strand by one nucleotide at a time. The Poxvirus enzyme creates the 3'(poly)A tail of mRNAs, and is a heterodimer of a catalytic and a regulatory subunit. This entry represents the nucleotidyltransferase domain of the catalytic subunit [].; PDB: 3ERC_C 3ER8_D 3OWG_A 2GA9_D 2GAF_D 3ER9_B.
Probab=32.84 E-value=42 Score=28.29 Aligned_cols=79 Identities=16% Similarity=0.154 Sum_probs=37.9
Q ss_pred hhhHHHHHHHHHHHhCCChHHHHHHHH---HHHHHHHHHchhCC---ceEEEecccccCCCCC---CCCcceeeecCCCc
Q 038458 11 WLKAEEITAELIARIQPDPFSEERRNA---VAAYVRRLIIQCFP---CQVFTFGSVPLKTYLP---DRDIDLGAFSDDQT 81 (347)
Q Consensus 11 ~~~l~~~i~~f~~~l~Pt~~e~~~R~~---vi~~l~~~i~~~~p---~~v~~fGS~~tgl~lp---~SDiDl~v~~~~~~ 81 (347)
..++-.++..-++-..|+. +...|.. .+..+.+++++.+. -+...|||+..-+--| -+|||+.=...
T Consensus 5 ~~~ia~~~l~s~~v~~~~~-~~~grh~vS~lV~~V~klmeEyLrrhNk~CicYGSyslhllN~~I~YgDIDilqTNa--- 80 (149)
T PF03296_consen 5 MEKIASDYLNSYNVANPSG-KVMGRHNVSDLVENVNKLMEEYLRRHNKSCICYGSYSLHLLNPNIKYGDIDILQTNA--- 80 (149)
T ss_dssp GHHHHHHHHHHH--S--------------THHHHHHHHHHHHHHH-TTTEEEESHHHHHTTSTTS--SS-EEEESTH---
T ss_pred HHHHHHHHHHHhcccccCc-cccccccCcHHHHHHHHHHHHHHHhhCCCeEEeeeeeEEecCCCcccCcchhhhccc---
Confidence 3444455555555666665 3444543 35555555544433 6788999998777655 48999874433
Q ss_pred chhhHHHHHHHHHh
Q 038458 82 LKDTWAHLVRDMLE 95 (347)
Q Consensus 82 ~~~~~~~~l~~~L~ 95 (347)
.+++-.++-++.
T Consensus 81 --r~flI~laflI~ 92 (149)
T PF03296_consen 81 --RTFLINLAFLIK 92 (149)
T ss_dssp --HHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHh
Confidence 345444554444
No 59
>PHA02996 poly(A) polymerase large subunit; Provisional
Probab=29.77 E-value=44 Score=33.08 Aligned_cols=113 Identities=15% Similarity=0.100 Sum_probs=66.2
Q ss_pred CCCchhhhHHHHHHHHHHHhCCChHHHHHHH---HHHHHHHHHHchhCC---ceEEEecccccCCCCC---CCCcceeee
Q 038458 6 LDPGRWLKAEEITAELIARIQPDPFSEERRN---AVAAYVRRLIIQCFP---CQVFTFGSVPLKTYLP---DRDIDLGAF 76 (347)
Q Consensus 6 ~~~~~~~~l~~~i~~f~~~l~Pt~~e~~~R~---~vi~~l~~~i~~~~p---~~v~~fGS~~tgl~lp---~SDiDl~v~ 76 (347)
.|.+...++-+++.+-|+-..|++ ...-|. .++..+.+++++.+. -.+..|||+..-+--| -+|||+.=.
T Consensus 117 ~d~~sm~~la~~~L~synv~~~~~-kvmgrh~VSdLV~~V~klmeEyLrrhNk~CicYGSySlhllNp~I~YgDIDilqT 195 (467)
T PHA02996 117 YDYSSMEKLARDALNSYNVAVISE-KVMGRHNVSDLVGNVNKLMEEYLRRHNKSCICYGSYSLHLLNPEIEYGDIDILQT 195 (467)
T ss_pred cchHHHHHHHHHHHHhccccCCCc-cccccccccHHHHHHHHHHHHHHHhcCCceEEeeceeeeecCCccccCCcceeee
Confidence 344555566667777777777775 322232 356666666655543 7788999999887665 489998755
Q ss_pred cCCCcchhhHHHHHHHHHhhccccccccceeeeEEEeeecceEEEEe----e-cCeeEEEeec
Q 038458 77 SDDQTLKDTWAHLVRDMLENEEKNEHAEFRVKEVQYIQAEVKIIKCL----V-DNFVVDIAFN 134 (347)
Q Consensus 77 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~I~ArVPIIK~~----~-~~i~vDIs~n 134 (347)
.. .+++-.++-++.-- ..-.++--|||-+|=- + .|.++==|||
T Consensus 196 Na-----r~fLInlaflI~fi----------tG~~v~LlkVPyLknyivlkdee~~hIiDsfn 243 (467)
T PHA02996 196 NS-----RTFLINLAFLIKFI----------TGRNVVLLKVPYLKNYMVLKDEEDNHIIDSFN 243 (467)
T ss_pred cc-----HHHHHHHHHHHhhh----------cCceEEEEEcccccceEEEEecCCCEEEEecc
Confidence 44 34544444444321 1112335689988733 2 4444433665
No 60
>PRK14109 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase; Provisional
Probab=27.43 E-value=76 Score=35.66 Aligned_cols=28 Identities=14% Similarity=0.089 Sum_probs=26.1
Q ss_pred ceEEEecccccCCCCCCCCcceeeecCC
Q 038458 52 CQVFTFGSVPLKTYLPDRDIDLGAFSDD 79 (347)
Q Consensus 52 ~~v~~fGS~~tgl~lp~SDiDl~v~~~~ 79 (347)
..|..+|++.-+=-.|.||||++++..+
T Consensus 724 ~avia~Gk~Gr~EL~~~SDlDl~fl~~~ 751 (1007)
T PRK14109 724 IAVIGMGRLGGRELGYGSDADVMFVHEP 751 (1007)
T ss_pred EEEEEeccccccccCCCCCCcEEEEeCC
Confidence 5899999999999999999999999974
No 61
>PF03281 Mab-21: Mab-21 protein
Probab=24.14 E-value=3e+02 Score=25.64 Aligned_cols=57 Identities=26% Similarity=0.303 Sum_probs=38.2
Q ss_pred ChhhHHHHHHHHHHHHHhhcccCCCCCCCcHHHHHHHHHHHHHhCcCCC----CChHHHHHHHHh
Q 038458 155 NHLFKRSIILIKAWCYYESRILGGHHGLISSYALVTLVLYIFHVFNGSF----AGPLEVLYRFLE 215 (347)
Q Consensus 155 ~p~~r~L~~~lK~Wa~~~~r~ln~~~GglsSYal~lMvi~fLQ~~~~~~----~~p~~lL~~Ff~ 215 (347)
....+..+.++|... +... ...++|+||.|-.++++-|..+|... ...++.|.+.+.
T Consensus 190 ~~~~~~~l~llk~l~--~~~~--~~~~~l~syhLkt~ll~~~~~~p~~~~W~~~~l~~~l~~~l~ 250 (292)
T PF03281_consen 190 NGCRKKCLRLLKALR--DRHL--TNLSGLSSYHLKTVLLWLCEKHPSSSDWSEENLGERLLDLLD 250 (292)
T ss_pred cccHHHHHHHHHHHH--Hhcc--ccCCCccHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Confidence 455677778888432 2222 46778999999999999999987652 223455555554
No 62
>PF03710 GlnE: Glutamate-ammonia ligase adenylyltransferase; InterPro: IPR005190 This is a conserved repeated domain found in GlnE proteins. These proteins adenylate and deadenylate glutamine synthases: ATP + {L-Glutamate:ammonia ligase (ADP-forming)} = Diphosphate + Adenylyl-{L-Glutamate:Ammonia ligase (ADP-forming)}. The domain is related to the nucleotidyltransferase domain IPR002934 from INTERPRO.; GO: 0008882 [glutamate-ammonia-ligase] adenylyltransferase activity; PDB: 1V4A_A 3K7D_A.
Probab=23.78 E-value=72 Score=29.42 Aligned_cols=29 Identities=24% Similarity=0.216 Sum_probs=17.3
Q ss_pred ceEEEecccccCCCCCCCCcceeeecCCC
Q 038458 52 CQVFTFGSVPLKTYLPDRDIDLGAFSDDQ 80 (347)
Q Consensus 52 ~~v~~fGS~~tgl~lp~SDiDl~v~~~~~ 80 (347)
..|...|-...+=-...||||++.+.+..
T Consensus 128 ~~ViamGKlGg~ELny~SDiDLifvy~~~ 156 (247)
T PF03710_consen 128 FAVIAMGKLGGRELNYSSDIDLIFVYDPD 156 (247)
T ss_dssp EEEEE-HHHHTT---TT--EEEEEEE---
T ss_pred eEEEEeccccccccCCccCCceEEEeccc
Confidence 47778888888888899999999999974
No 63
>PRK05092 PII uridylyl-transferase; Provisional
Probab=23.54 E-value=1e+02 Score=34.19 Aligned_cols=28 Identities=25% Similarity=0.224 Sum_probs=26.2
Q ss_pred ceEEEecccccCCCCCCCCcceeeecCC
Q 038458 52 CQVFTFGSVPLKTYLPDRDIDLGAFSDD 79 (347)
Q Consensus 52 ~~v~~fGS~~tgl~lp~SDiDl~v~~~~ 79 (347)
..|...|++.-|=-.|.|||||.++.++
T Consensus 106 ~alvA~GgyGr~EL~p~SDiDLl~l~~~ 133 (931)
T PRK05092 106 LAVLAVGGYGRGELAPGSDIDLLFLLPY 133 (931)
T ss_pred eEEEEecCcCCcccCCCCCceEEEEeCC
Confidence 5799999999999999999999999985
No 64
>smart00545 JmjN Small domain found in the jumonji family of transcription factors. To date, this domain always co-occurs with the JmjC domain (although the reverse is not true).
Probab=21.39 E-value=1.2e+02 Score=20.03 Aligned_cols=31 Identities=16% Similarity=0.184 Sum_probs=22.0
Q ss_pred hCCChHHHHHHHHHHHHHHHHHchhCC-ceEEE
Q 038458 25 IQPDPFSEERRNAVAAYVRRLIIQCFP-CQVFT 56 (347)
Q Consensus 25 l~Pt~~e~~~R~~vi~~l~~~i~~~~p-~~v~~ 56 (347)
..||.+|.+--...++.++.. -..++ |+|.|
T Consensus 5 f~Pt~eEF~Dp~~yi~~i~~~-~~~yGi~KIvP 36 (42)
T smart00545 5 FYPTMEEFKDPLAYISKIRPQ-AEKYGICKVVP 36 (42)
T ss_pred EcCCHHHHHCHHHHHHHHHHH-HhhCCEEEEEC
Confidence 468988887666777777774 44577 77765
No 65
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=20.75 E-value=1.1e+02 Score=29.22 Aligned_cols=47 Identities=9% Similarity=0.020 Sum_probs=34.6
Q ss_pred HHHHHHHHHchhCC-ceEEEecccccCCCCCC---------------CCcceeeecCCCcchh
Q 038458 38 VAAYVRRLIIQCFP-CQVFTFGSVPLKTYLPD---------------RDIDLGAFSDDQTLKD 84 (347)
Q Consensus 38 vi~~l~~~i~~~~p-~~v~~fGS~~tgl~lp~---------------SDiDl~v~~~~~~~~~ 84 (347)
.+..+.+.+++.+| +.+..|.+.+-|=.-+. -+.|++|+..+-.+.+
T Consensus 27 a~~D~~~~~~~r~~~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~e 89 (319)
T PF02601_consen 27 AIQDFLRTLKRRNPIVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGSIE 89 (319)
T ss_pred HHHHHHHHHHHhCCCcEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCCCChH
Confidence 45556666777888 99999999988876553 1689999998754443
No 66
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=20.69 E-value=1.4e+02 Score=29.85 Aligned_cols=48 Identities=13% Similarity=0.130 Sum_probs=35.9
Q ss_pred HHHHHHHHHHchhCC-ceEEEecccccCCCCC-----------CCCcceeeecCCCcchh
Q 038458 37 AVAAYVRRLIIQCFP-CQVFTFGSVPLKTYLP-----------DRDIDLGAFSDDQTLKD 84 (347)
Q Consensus 37 ~vi~~l~~~i~~~~p-~~v~~fGS~~tgl~lp-----------~SDiDl~v~~~~~~~~~ 84 (347)
.++..+.+.+++.|| +.+..|...+-|=.-+ ..+.|++|+..+-.+.+
T Consensus 147 Aa~~D~~~~~~~r~p~~~~~~~~~~vQG~~A~~~i~~al~~~~~~~~Dviii~RGGGS~e 206 (438)
T PRK00286 147 AAIRDILTVLRRRFPLVEVIIYPTLVQGEGAAASIVAAIERANARGEDVLIVARGGGSLE 206 (438)
T ss_pred HHHHHHHHHHHhcCCCCeEEEecCcCcCccHHHHHHHHHHHhcCCCCCEEEEecCCCCHH
Confidence 567777888888899 9999999988776433 23479999998744433
No 67
>PF02375 JmjN: jmjN domain; InterPro: IPR003349 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with JmjC (see IPR003347 from INTERPRO).; PDB: 2XML_A 2W2I_C 3DXT_A 3DXU_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=20.64 E-value=92 Score=19.62 Aligned_cols=31 Identities=6% Similarity=0.009 Sum_probs=16.3
Q ss_pred hCCChHHHHHHHHHHHHHHHHHchhCC-ceEEE
Q 038458 25 IQPDPFSEERRNAVAAYVRRLIIQCFP-CQVFT 56 (347)
Q Consensus 25 l~Pt~~e~~~R~~vi~~l~~~i~~~~p-~~v~~ 56 (347)
..||.+|.+--..-++.++..-. .++ |+|.|
T Consensus 3 f~Pt~eEF~dp~~yi~~i~~~g~-~~Gi~KIvP 34 (34)
T PF02375_consen 3 FYPTMEEFKDPIKYISSIEPEGE-KYGICKIVP 34 (34)
T ss_dssp E---HHHHS-HHHHHHHHHHTTG-GGSEEEE--
T ss_pred ccCCHHHHhCHHHHHHHHHHHHH-HCCEEEecC
Confidence 35888888766666777666433 466 77654
Done!