Query 038458
Match_columns 347
No_of_seqs 188 out of 966
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 19:34:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038458.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038458hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fh3_A Poly(A) RNA polymerase 100.0 1.4E-56 4.7E-61 433.4 25.2 282 6-324 8-336 (349)
2 4e8f_A Poly(A) RNA polymerase 100.0 9.3E-57 3.2E-61 441.4 23.8 279 5-324 35-364 (405)
3 3nyb_A Poly(A) RNA polymerase 100.0 4.5E-56 1.5E-60 425.3 25.5 271 8-324 15-299 (323)
4 3hj4_A Minor editosome-associa 100.0 7.8E-54 2.7E-58 412.7 20.6 297 12-323 5-366 (384)
5 2ikf_A RNA uridylyl transferas 100.0 5.7E-54 1.9E-58 415.7 15.9 271 12-322 26-349 (353)
6 2b4v_A RNA editing complex pro 100.0 4.2E-51 1.4E-55 406.0 19.3 281 5-325 11-441 (468)
7 3pq1_A Poly(A) RNA polymerase; 100.0 1.1E-49 3.8E-54 393.4 25.5 237 12-324 132-438 (464)
8 1q79_A Poly(A) polymerase alph 100.0 4.5E-48 1.5E-52 387.8 28.4 283 1-326 21-353 (514)
9 2hhp_A Poly(A) polymerase; tem 100.0 1.3E-47 4.4E-52 385.8 29.1 283 1-326 8-340 (530)
10 1r89_A TRNA nucleotidyltransfe 99.6 2.8E-13 9.7E-18 132.5 23.0 235 14-320 3-248 (437)
11 1px5_A 2'-5'-oligoadenylate sy 99.5 1.1E-12 3.7E-17 126.2 16.8 199 16-219 9-264 (349)
12 4at7_A Interleukin enhancer-bi 98.2 0.00026 9E-09 67.0 20.5 252 9-329 22-308 (364)
13 1no5_A Hypothetical protein HI 98.0 1E-05 3.4E-10 64.9 7.4 43 37-79 12-55 (114)
14 1ylq_A Putative nucleotidyltra 97.9 1.1E-05 3.8E-10 62.7 5.7 42 38-79 3-46 (96)
15 1wot_A Putative minimal nucleo 97.7 2.8E-05 9.6E-10 60.6 4.0 30 50-79 23-53 (98)
16 2rff_A Putative nucleotidyltra 97.6 4.2E-05 1.4E-09 61.1 4.7 46 34-79 11-61 (111)
17 4at7_B NF90, interleukin enhan 97.0 0.025 8.5E-07 54.0 16.3 241 15-329 13-340 (383)
18 4ebj_A Aminoglycoside nucleoti 96.8 0.0013 4.4E-08 59.3 4.9 41 39-79 26-68 (272)
19 1kny_A Kntase, kanamycin nucle 96.4 0.0017 5.8E-08 59.1 3.7 43 37-79 14-59 (253)
20 3jz0_A Lincosamide nucleotidyl 92.5 0.1 3.5E-06 48.2 4.5 53 27-79 16-69 (287)
21 2fmp_A DNA polymerase beta; nu 87.1 6.5 0.00022 36.8 12.1 93 37-137 157-263 (335)
22 2bcq_A DNA polymerase lambda; 84.4 9.6 0.00033 35.6 11.7 60 37-97 154-214 (335)
23 2ihm_A POL MU, DNA polymerase 72.9 3.6 0.00012 39.0 4.9 60 37-97 161-221 (360)
24 1jms_A Terminal deoxynucleotid 63.6 11 0.00037 35.9 6.1 60 37-97 181-243 (381)
25 2pbe_A AAD6, aminoglycoside 6- 60.3 7.2 0.00025 35.8 4.1 43 37-79 8-53 (294)
26 2fcl_A Hypothetical protein TM 54.7 57 0.002 27.1 8.5 56 35-97 15-75 (169)
27 3b0x_A DNA polymerase beta fam 51.4 1.2E+02 0.0041 30.1 11.8 83 38-137 166-250 (575)
28 3er9_B Poly(A) polymerase cata 33.0 15 0.00051 35.0 1.4 85 6-95 129-222 (479)
29 1v4a_A Glutamate-ammonia-ligas 25.3 28 0.00096 33.7 2.0 28 52-79 155-182 (440)
No 1
>4fh3_A Poly(A) RNA polymerase protein CID1; nucleotidyltransferase, poly(U) polymerase, transferase; 2.00A {Schizosaccharomyces pombe} PDB: 4fh5_A* 4fhp_A* 4fhv_A* 4fhw_A* 4fhy_A* 4fhx_A* 4ep7_A*
Probab=100.00 E-value=1.4e-56 Score=433.38 Aligned_cols=282 Identities=22% Similarity=0.299 Sum_probs=219.1
Q ss_pred CCCchhhhHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHchhCC-ceEEEecccccCCCCCCCCcceeeecCCCcchh
Q 038458 6 LDPGRWLKAEEITAELIARIQPDPFSEERRNAVAAYVRRLIIQCFP-CQVFTFGSVPLKTYLPDRDIDLGAFSDDQTLKD 84 (347)
Q Consensus 6 ~~~~~~~~l~~~i~~f~~~l~Pt~~e~~~R~~vi~~l~~~i~~~~p-~~v~~fGS~~tgl~lp~SDiDl~v~~~~~~~~~ 84 (347)
..|.....+++.+.+++++++||++|.+.|+.++++|+++|++.|| ++|++|||++||+++|+||||+||..+.....+
T Consensus 8 ~~p~~~~el~~~~~~l~~~~~pt~~e~~~R~~~~~~l~~~i~~~~p~~~v~~fGS~~~g~~~~~SDiDl~v~~~~~~~~~ 87 (349)
T 4fh3_A 8 KVPNSHKEFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLESGLALKNSDMDLCVLMDSRVQSD 87 (349)
T ss_dssp ----CCHHHHHHHHHHHHHHBCCHHHHHHHHHHHHHHHHHHHTTCTTCEEEEESHHHHTCCBSSCCEEEEEECCTTSCHH
T ss_pred CCchHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEeeccCCCCCCCCCEEEEEecCCCCChH
Confidence 3467778888899999999999999999999999999999999999 999999999999999999999999998754444
Q ss_pred hHHHHHHHHHhhccccccccceeeeEEEe-eecceEEEEee-------cCeeEEEeecCCCccchhhhHHHHHHHhccCh
Q 038458 85 TWAHLVRDMLENEEKNEHAEFRVKEVQYI-QAEVKIIKCLV-------DNFVVDIAFNQLGGLCTLCFLDEVDHLINENH 156 (347)
Q Consensus 85 ~~~~~l~~~L~~~~~~~~~~~~~~~v~~I-~ArVPIIK~~~-------~~i~vDIs~n~~~g~~~s~~l~~i~~~~~~~p 156 (347)
.+...+...+... ..+++.| +||||||||++ +|+.||||+||.+|+.++.++ ..++..+|
T Consensus 88 ~~~~~~~~~~~~~---------~~~~~~i~~ArVPiik~~~~~~~~~~~~~~~Dis~~~~~g~~~t~ll---~~~~~~~~ 155 (349)
T 4fh3_A 88 TIALQFYEELIAE---------GFEGKFLQRARIPIIKLTSDTKNGFGASFQCDIGFNNRLAIHNTLLL---SSYTKLDA 155 (349)
T ss_dssp HHHHHHHHHHHHT---------TEEEEEEEETTEEEEEEEEESSSSSCTTCCEEEEESCHHHHHHHHHH---HHHHHHCT
T ss_pred HHHHHHHHHHHhh---------cccceEeeeeeeeeEEEEecccccccccceeecCcCcchHHHHHHHH---HHHhhcCH
Confidence 4444443333322 1244567 99999999996 479999999999999998887 66788999
Q ss_pred hhHHHHHHHHHHHHHhhcccC-CCCCCCcHHHHHHHHHHHHHhCcC-----C----------------------------
Q 038458 157 LFKRSIILIKAWCYYESRILG-GHHGLISSYALVTLVLYIFHVFNG-----S---------------------------- 202 (347)
Q Consensus 157 ~~r~L~~~lK~Wa~~~~r~ln-~~~GglsSYal~lMvi~fLQ~~~~-----~---------------------------- 202 (347)
++|+|+++||+|| ++|++| ++.||||||+|++|||+|||+... .
T Consensus 156 ~~r~l~~~iK~wa--k~~~l~~~~~G~lssy~l~lmvi~fLQ~~~~pp~lP~l~~~~~~~~~~~~~~~~~f~~~~~~~~~ 233 (349)
T 4fh3_A 156 RLKPMVLLVKHWA--KRKQINSPYFGTLSSYGYVLMVLYYLIHVIKPPVFPNLLLSPLKQEKIVDGFDVGFDDKLEDIPP 233 (349)
T ss_dssp THHHHHHHHHHHH--HHTTCCCGGGTSCCHHHHHHHHHHHHHHTSSSCSSCCSSSCTTCCCCEETTEECCCCCCGGGSCC
T ss_pred HHHHHHHHHHHHH--HHcCCCCcCCCCCChHHHHHHHHHHHHhccCCCcCchhhhccccccccccCcccccccchhhccc
Confidence 9999999999998 788887 699999999999999999996421 0
Q ss_pred ---CCChHHHHHHHHhccc-cCCCCCeeEEeeCCcccCCCCCccCCCCCCCCCcccccHhHHHHHHhhcCCCCCCCCCCC
Q 038458 203 ---FAGPLEVLYRFLEFFS-KFDWDNFCLSLWGPVPISLLPDVTAEPPRKDGGVLLLSKSFLDSCRYAYADFPGGQENQG 278 (347)
Q Consensus 203 ---~~~p~~lL~~Ff~~Y~-~Fd~~~~~isi~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (347)
..+.++||.+||+||| +|||.+.+||++++... ++++... .............
T Consensus 234 ~~n~~slg~LL~~FF~~Y~~~Fd~~~~vIsi~~~~~~-------------------~~k~~k~----~~~~~~~~~~~~~ 290 (349)
T 4fh3_A 234 SQNYSSLGSLLHGFFRFYAYKFEPREKVVTFRRPDGY-------------------LTKQEKG----WTSATEHTGSADQ 290 (349)
T ss_dssp CSCCCCHHHHHHHHHHHHHHTCCTTTBCBCSSSTTCC-------------------CBHHHHT----CC-----------
T ss_pred ccCcccHHHHHHHHHHHhhhccCCCCceEEecCCCCc-------------------cchHHhc----ccccccccCcccc
Confidence 1245899999999999 89999999999765321 1111000 0000000000011
Q ss_pred CCccCcceEEeCCCCCCCCcccccCcchHHHHHHHHHHHHHHHHHH
Q 038458 279 QPFVSKHFNVIDPLRVNNNLGRSVSKGNFFRIRTAFTFRAKGLARL 324 (347)
Q Consensus 279 ~~~~~~~l~IeDPf~~~~N~~rsv~~~~~~~I~~~F~~a~~~l~~~ 324 (347)
.......|+|||||+++||+||+|+..++.+|++||++|+++|.+.
T Consensus 291 ~~~~~~~l~IeDPf~~~~Nvar~Vs~~~~~~I~~eF~~A~~~L~~~ 336 (349)
T 4fh3_A 291 IIKDRYILAIEDPFEISHNVGRTVSSSGLYRIRGEFMAASRLLNSR 336 (349)
T ss_dssp ----CCSSCBBCSSSTTCBGGGGCCHHHHHHHHHHHHHHHHHHHCC
T ss_pred cCCCCceEEEECCCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHhCc
Confidence 1122357999999999999999999999999999999999999754
No 2
>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like nucleotidyl transferase, terminal uridi transferase, UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe 972h-} PDB: 4e7x_A* 4e80_A
Probab=100.00 E-value=9.3e-57 Score=441.40 Aligned_cols=279 Identities=23% Similarity=0.320 Sum_probs=225.0
Q ss_pred CCCCchhhhHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHchhCC-ceEEEecccccCCCCCCCCcceeeecCCCcch
Q 038458 5 PLDPGRWLKAEEITAELIARIQPDPFSEERRNAVAAYVRRLIIQCFP-CQVFTFGSVPLKTYLPDRDIDLGAFSDDQTLK 83 (347)
Q Consensus 5 ~~~~~~~~~l~~~i~~f~~~l~Pt~~e~~~R~~vi~~l~~~i~~~~p-~~v~~fGS~~tgl~lp~SDiDl~v~~~~~~~~ 83 (347)
.+.|+.|+.|+++|.+|+++++||++|.+.|+.++++|++++++.|| ++|++|||+++|+++|+||||++|..+.....
T Consensus 35 ~~~~~~~~~L~~~i~~~~~~i~Pt~eE~~~R~~v~~~l~~~i~~~~p~~~v~~fGS~~~G~~~~~SDiDl~v~~~~~~~~ 114 (405)
T 4e8f_A 35 QKVPNSHKEFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLESGLALKNSDMDLCVLMDSRVQS 114 (405)
T ss_dssp ---CCSCHHHHHHHHHHHHHHBCCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEESHHHHTCCBSSCCEEEEEECCC---C
T ss_pred ccCchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEeeccCCCCCCCCCEEEEEEecCCCCH
Confidence 35789999999999999999999999999999999999999999999 99999999999999999999999999863333
Q ss_pred hhHHHHHHHHHhhccccccccceeeeEEEe-eecceEEEEe-e--c----CeeEEEeecCCCccchhhhHHHHHHHhccC
Q 038458 84 DTWAHLVRDMLENEEKNEHAEFRVKEVQYI-QAEVKIIKCL-V--D----NFVVDIAFNQLGGLCTLCFLDEVDHLINEN 155 (347)
Q Consensus 84 ~~~~~~l~~~L~~~~~~~~~~~~~~~v~~I-~ArVPIIK~~-~--~----~i~vDIs~n~~~g~~~s~~l~~i~~~~~~~ 155 (347)
+.++..+.+.|++. ..++..| +||||||||+ + + |++|||||||..|+.++.++ ..|...+
T Consensus 115 ~~~l~~l~~~L~~~---------~~~v~~i~~ArVPIIK~~~d~~~g~~~gi~~DIs~~n~~g~~~t~ll---~~y~~~~ 182 (405)
T 4e8f_A 115 DTIALQFYEELIAE---------GFEGKFLQRARIPIIKLTSDTKNGFGASFQCDIGFNNRLAIHNTLLL---SSYTKLD 182 (405)
T ss_dssp TTHHHHHHHHHHHT---------TEEEEEEEETTEEEEEEEEESSSSCCTTCCEEEEESCHHHHHHHHHH---HHHHHHC
T ss_pred HHHHHHHHHHHHhc---------CCeeEEeccCCCcEEEEEeccCCCccCceEEEEeecccchHHHHHHH---HHHHhhC
Confidence 45677788888763 1245667 9999999999 5 5 99999999999999998887 5667789
Q ss_pred hhhHHHHHHHHHHHHHhhcccC-CCCCCCcHHHHHHHHHHHH-HhCcCC-------------------------------
Q 038458 156 HLFKRSIILIKAWCYYESRILG-GHHGLISSYALVTLVLYIF-HVFNGS------------------------------- 202 (347)
Q Consensus 156 p~~r~L~~~lK~Wa~~~~r~ln-~~~GglsSYal~lMvi~fL-Q~~~~~------------------------------- 202 (347)
|++|+|+++||+|+ ++|++| ++.||||||+|++||++|| |...+.
T Consensus 183 p~~r~Lv~~lK~wa--k~rgl~~~~~GglsSY~l~lmvi~fLqQ~~~ppvlP~Lq~~~~~~~~~~~g~~~~f~~~l~~~~ 260 (405)
T 4e8f_A 183 ARLKPMVLLVKHWA--KRKQINSPYFGTLSSYGYVLMVLYYLIHVIKPPVFPNLLLSPLKQEKIVDGFDVGFDDKLEDIP 260 (405)
T ss_dssp TTHHHHHHHHHHHH--HHTTCCCTTTTSCCHHHHHHHHHHHHHHTSSSCSSCCSSSCTTCCCCEETTEECCCCCCGGGSC
T ss_pred HHHHHHHHHHHHHH--HHcCCCcCcCCCcChHHHHHHHHHHHHhccCCCcCCchhhcccccccccCCeeeccccchhhhc
Confidence 99999999999998 788887 6999999999999999999 643211
Q ss_pred ----CCChHHHHHHHHhccc-cCCCCCeeEEeeC-CcccCCCCCccCCCCCCCCCcccccHhHHHHHHhhcCCCCC--CC
Q 038458 203 ----FAGPLEVLYRFLEFFS-KFDWDNFCLSLWG-PVPISLLPDVTAEPPRKDGGVLLLSKSFLDSCRYAYADFPG--GQ 274 (347)
Q Consensus 203 ----~~~p~~lL~~Ff~~Y~-~Fd~~~~~isi~~-~~~~~~~~~~~~~~p~~~~g~~~~~~~~~~~~~~~~~~~~~--~~ 274 (347)
..+.|+||.+||+||| +|||++.+||+++ +..+ +|+- .++... ..
T Consensus 261 ~~~n~~slg~LL~~FF~yY~~~Fd~~~~vIsir~~g~~~--------------------~K~~-------k~w~~~~~~~ 313 (405)
T 4e8f_A 261 PSQNYSSLGSLLHGFFRFYAYKFEPREKVVTFRRPDGYL--------------------TKQE-------KGWTSATEHT 313 (405)
T ss_dssp CCSCCCCHHHHHHHHHHHHHHTCCTTTBEECSSSTTCCC--------------------BHHH-------HTCCC-----
T ss_pred cccccccHHHHHHHHHHHHhcccCCCCcEEEEecCCccc--------------------cccc-------cccccccccc
Confidence 1345899999999999 9999999999983 2221 1110 000000 00
Q ss_pred CCCCCC-ccCcceEEeCCCCCCCCcccccCcchHHHHHHHHHHHHHHHHHH
Q 038458 275 ENQGQP-FVSKHFNVIDPLRVNNNLGRSVSKGNFFRIRTAFTFRAKGLARL 324 (347)
Q Consensus 275 ~~~~~~-~~~~~l~IeDPf~~~~N~~rsv~~~~~~~I~~~F~~a~~~l~~~ 324 (347)
...... -....|||||||+++||+||+|+..++.+|++||++|++.|.+.
T Consensus 314 g~~~~~~~~~~~L~IeDPf~~~~Nv~r~vs~~~~~~I~~eF~rA~~iL~~~ 364 (405)
T 4e8f_A 314 GSADQIIKDRYILAIEDPFEISHNVGRTVSSSGLYRIRGEFMAASRLLNSR 364 (405)
T ss_dssp --------CCCSSEEBCSSSTTCBTTTTCCHHHHHHHHHHHHHHHHHHTCS
T ss_pred ccccccccCCceEEEECCCCcccccccCCCHHHHHHHHHHHHHHHHHHhhh
Confidence 000000 12357999999999999999999999999999999999999865
No 3
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.5e-56 Score=425.27 Aligned_cols=271 Identities=21% Similarity=0.297 Sum_probs=226.6
Q ss_pred CchhhhHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHchhCC-ceEEEecccccCCCCCCCCcceeeecCCCcc-hhh
Q 038458 8 PGRWLKAEEITAELIARIQPDPFSEERRNAVAAYVRRLIIQCFP-CQVFTFGSVPLKTYLPDRDIDLGAFSDDQTL-KDT 85 (347)
Q Consensus 8 ~~~~~~l~~~i~~f~~~l~Pt~~e~~~R~~vi~~l~~~i~~~~p-~~v~~fGS~~tgl~lp~SDiDl~v~~~~~~~-~~~ 85 (347)
.+.-+.|+++|.+|+++++||++|.+.|+.++++|++++++.|| ++|.+|||+++|+++|+||||+++..+.... ...
T Consensus 15 ~~~~~~L~~Ei~~f~~~i~Pt~eE~~~R~~~~~~l~~~~~~~~p~~~v~~fGS~~~g~~~~~SDiDl~v~~~~~~~~~~~ 94 (323)
T 3nyb_A 15 KEISDWLTFEIKDFVAYISPSREEIEIRNQTISTIREAVKQLWPDADLHVFGSYSTDLYLPGSDIDCVVTSELGGKESRN 94 (323)
T ss_dssp SSHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHTTCTTCCEEEESTTTTTCCCTTSCEEEEECSSCCGGGHHH
T ss_pred chHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEeCccccCCCCCCCCceEEEecCCCChhHHH
Confidence 45567799999999999999999999999999999999999999 9999999999999999999999999986321 234
Q ss_pred HHHHHHHHHhhccccccccceeeeEEEe-eecceEEEEee--cCeeEEEeecCCCccchhhhHHHHHHHhccChhhHHHH
Q 038458 86 WAHLVRDMLENEEKNEHAEFRVKEVQYI-QAEVKIIKCLV--DNFVVDIAFNQLGGLCTLCFLDEVDHLINENHLFKRSI 162 (347)
Q Consensus 86 ~~~~l~~~L~~~~~~~~~~~~~~~v~~I-~ArVPIIK~~~--~~i~vDIs~n~~~g~~~s~~l~~i~~~~~~~p~~r~L~ 162 (347)
.+..+++.|++.+ .+.+|++| +||||||||++ +|++|||||+|.+|+.++.++ ..++..+|++|+|+
T Consensus 95 ~l~~l~~~L~~~~-------~~~~v~~I~~ArVPIIk~~~~~~gi~vDIs~~~~~g~~~t~li---~~~~~~~~~~r~lv 164 (323)
T 3nyb_A 95 NLYSLASHLKKKN-------LATEVEVVAKARVPIIKFVEPHSGIHIAVSFERTNGIEAAKLI---REWLDDTPGLRELV 164 (323)
T ss_dssp HHHHHHHHHHHTT-------SCSSCEEEESSSCEEEEEEETTTTEEEEEESSCSSTTHHHHHH---HHHHHSCTTHHHHH
T ss_pred HHHHHHHHHhhCC-------CceEEEEEeccCCCEEEEEEcCCCceEEEEecCcHHHHHHHHH---HHHHHhhhhHHHHH
Confidence 6778888888754 35577888 99999999996 899999999999999998877 67788999999999
Q ss_pred HHHHHHHHHhhcccC-CCCCCCcHHHHHHHHHHHHHhCcCC-------CCChHHHHHHHHhccc-cCCCCCeeEEeeCCc
Q 038458 163 ILIKAWCYYESRILG-GHHGLISSYALVTLVLYIFHVFNGS-------FAGPLEVLYRFLEFFS-KFDWDNFCLSLWGPV 233 (347)
Q Consensus 163 ~~lK~Wa~~~~r~ln-~~~GglsSYal~lMvi~fLQ~~~~~-------~~~p~~lL~~Ff~~Y~-~Fd~~~~~isi~~~~ 233 (347)
++||+|+ ++|++| ++.||||||+|++||++|||.+|+. ..+.|+||.+||+||| +|||++.+||++.+.
T Consensus 165 ~~iK~wa--k~r~l~~~~~G~lssy~l~lmvi~fLQ~~p~~~~~~~~~~~~lg~LL~~Ff~~Y~~~Fd~~~~~Isv~~g~ 242 (323)
T 3nyb_A 165 LIVKQFL--HARRLNNVHTGGLGGFSIICLVFSFLHMHPRIITNEIDPKDNLGVLLIEFFELYGKNFGYDDVALGSSDGY 242 (323)
T ss_dssp HHHHHHH--HHTTCSCGGGTCCCHHHHHHHHHHHHHTCHHHHTTCBCGGGCHHHHHHHHHHHHHHTCCTTTEEEEESSSC
T ss_pred HHHHHHH--HHcCCCCccCCCcCHHHHHHHHHHHHHhCCccCcccCCccccHHHHHHHHHHHhccccCCCCcEEEEecCC
Confidence 9999998 788887 6999999999999999999998631 2345899999999999 999999999997432
Q ss_pred ccCCCCCccCCCCCCCCCcccccHhHHHHHHhhcCCCCCCCCCCCCCccCcceEEeCCCCCCCCcccccCcchHHHHHHH
Q 038458 234 PISLLPDVTAEPPRKDGGVLLLSKSFLDSCRYAYADFPGGQENQGQPFVSKHFNVIDPLRVNNNLGRSVSKGNFFRIRTA 313 (347)
Q Consensus 234 ~~~~~~~~~~~~p~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~IeDPf~~~~N~~rsv~~~~~~~I~~~ 313 (347)
+.. +.++ .+... . .......|||||||+++||+||++ .++..|++|
T Consensus 243 ~~~------------------~~k~-------~~~~~-----~--~~~~~~~l~IeDP~~~~~nigr~~--~~~~~I~~~ 288 (323)
T 3nyb_A 243 PVY------------------FPKS-------TWSAI-----Q--PIKNPFSLAIQDPGDESNNISRGS--FNIRDIKKA 288 (323)
T ss_dssp EEE------------------EEGG-------GCGGG-----C--SCSCSSSCCBEETTEEEEETTTTC--TTHHHHHHH
T ss_pred cce------------------eeHH-------hcccc-----c--ccCCCceEEEeCCCCCCcccccch--HHHHHHHHH
Confidence 211 1110 00000 0 001234699999999999999995 468999999
Q ss_pred HHHHHHHHHHH
Q 038458 314 FTFRAKGLARL 324 (347)
Q Consensus 314 F~~a~~~l~~~ 324 (347)
|++|++.|.+-
T Consensus 289 F~~A~~~L~~~ 299 (323)
T 3nyb_A 289 FAGAFDLLTNR 299 (323)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999999865
No 4
>3hj4_A Minor editosome-associated tutase; nucleotidyltransferase, RNA UTP-binding, transferase; 1.56A {Trypanosoma brucei} PDB: 3hiy_A 3hj1_A*
Probab=100.00 E-value=7.8e-54 Score=412.72 Aligned_cols=297 Identities=18% Similarity=0.195 Sum_probs=218.1
Q ss_pred hhHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHchhCC-ceEEEecccccCCCCCCCCcceeeecCCCcc-----hh-
Q 038458 12 LKAEEITAELIARIQPDPFSEERRNAVAAYVRRLIIQCFP-CQVFTFGSVPLKTYLPDRDIDLGAFSDDQTL-----KD- 84 (347)
Q Consensus 12 ~~l~~~i~~f~~~l~Pt~~e~~~R~~vi~~l~~~i~~~~p-~~v~~fGS~~tgl~lp~SDiDl~v~~~~~~~-----~~- 84 (347)
.+|+++|.+|+++++||++|.+.|+.++++|++++++.|| ++|++|||++||+++|+||||+||..++... ..
T Consensus 5 ~~lt~EI~dFy~~i~PT~eE~~~R~~vv~~l~~ii~~~~p~~~v~~FGS~~tgl~lp~SDiDlvI~~~~~~~~~~~~~~~ 84 (384)
T 3hj4_A 5 REFIRGMMAHYRASLPPPEHSVVIHELQKRVLDIGMLAVNKAHVELFGSHVSGFCTPHSDADISLTYRNFSPWLQGMERV 84 (384)
T ss_dssp HHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHHHHHHHHSTTCEEEEESHHHHSCCCTTCCEEEEEECTTCCGGGTTCHHH
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeeeccCCCCCCCCCeeEEEecCCCcccccccchh
Confidence 5789999999999999999999999999999999999999 9999999999999999999999999875321 11
Q ss_pred hH--HHHHHHHHhhccccccccceeeeEEEeeecceEEEEee--cCeeEEEeecCCCccchhhhHHHHHHHhcc-ChhhH
Q 038458 85 TW--AHLVRDMLENEEKNEHAEFRVKEVQYIQAEVKIIKCLV--DNFVVDIAFNQLGGLCTLCFLDEVDHLINE-NHLFK 159 (347)
Q Consensus 85 ~~--~~~l~~~L~~~~~~~~~~~~~~~v~~I~ArVPIIK~~~--~~i~vDIs~n~~~g~~~s~~l~~i~~~~~~-~p~~r 159 (347)
.- ...+.+ +.+... ...++.|.+++||||||||++ +|++|||||||..|+.|+.++ ..+... ++++|
T Consensus 85 ~~~~~lrll~-L~k~~~----~~~ie~V~ii~ARVPIIKf~d~~tgi~~DIS~nn~~gi~ns~ll---~~y~~~~p~rlr 156 (384)
T 3hj4_A 85 DEQNNKRMTR-FGKEAS----AMGMEDVRYIRARIPVVQFTDGVTGIHCDVSIGNIGGVENSKIL---CAIRQVFPDFYG 156 (384)
T ss_dssp HHHHHHHHHH-HHHHHH----HHTCEEEEEECSSSCEEEEECTTTCCEEEEEECCHHHHHHHHHH---HHHHHTSHHHHH
T ss_pred hHHHHHHHHH-HHhhcc----cCCeeEEeecCcccCEEEEEEcCCCeEEEEEecccchHHHHHHH---HHHHhcCcHHHH
Confidence 00 001111 221111 114566776799999999997 899999999999999999887 555667 44799
Q ss_pred HHHHHHHHHHHHhhcccC-CCCCCCcHHHHHHHHHHHHHhCc--CCCC--------------------------------
Q 038458 160 RSIILIKAWCYYESRILG-GHHGLISSYALVTLVLYIFHVFN--GSFA-------------------------------- 204 (347)
Q Consensus 160 ~L~~~lK~Wa~~~~r~ln-~~~GglsSYal~lMvi~fLQ~~~--~~~~-------------------------------- 204 (347)
+|+++||+|+ ++|++| ++.||||||+|++|||+|||+++ |.++
T Consensus 157 ~LvllvK~Wa--k~rgLn~~~~GgLsSYaL~lMVI~fLQ~~~vLP~Lq~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~ 234 (384)
T 3hj4_A 157 AYIHLVKAWG--KAREVIAPERSTFNSFTVTTMALMVLQELGLLPVFSKPTGEFGELTVADAEMLLQEFKLPPIYDSLHD 234 (384)
T ss_dssp HHHHHHHHHH--HHTTSBCGGGTSBCHHHHHHHHHHHHHHHTSSCCCCCCCSTTSCCCHHHHHHHHTTCCCCGGGGGCSS
T ss_pred HHHHHHHHHH--HHcCCCCccCCCccHHHHHHHHHHHHhcCCCCCccccccccCCcccccccHhhhhhhcCCCCcCcCCC
Confidence 9999999998 778887 69999999999999999999864 1100
Q ss_pred ---ChHHH----HHHHHhccccCCCCCeeEEeeCCcccCCCCCccCCCCCCCCCcccc---cHhHHHHHHhhc--CCCCC
Q 038458 205 ---GPLEV----LYRFLEFFSKFDWDNFCLSLWGPVPISLLPDVTAEPPRKDGGVLLL---SKSFLDSCRYAY--ADFPG 272 (347)
Q Consensus 205 ---~p~~l----L~~Ff~~Y~~Fd~~~~~isi~~~~~~~~~~~~~~~~p~~~~g~~~~---~~~~~~~~~~~~--~~~~~ 272 (347)
+.|+| |.+||+||++|||++.+|||+.|+...++++.... +. -+.+- .|+|-....+.- +..+.
T Consensus 235 N~~sLgeL~~~lL~~Ff~yY~~Fdf~~~vISi~~p~~~~~~~~~~~~-~~---~~~~~~~~~~~w~~~~~~~~~~~~~~~ 310 (384)
T 3hj4_A 235 DDEKLGEAVFFCLQRFAEYYAKYDFSAGTVSLIHPRRHRTVYERVVR-RH---LELLGSRKRLEWEKHIAEHKEDGPLDE 310 (384)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCCTTTBCBCSSSTTCBHHHHHHHHH-HH---HHHHHHHHHHHHHHHHHHSGGGCSCCH
T ss_pred CcccHHHHHHHHHHHHHHHheecCCCCCEEEecCCcccccccchhhh-hh---hhhccchhhhhhhhhhhccccCCCCCC
Confidence 12677 99999999999999999999988665443222100 00 00001 112322221111 00000
Q ss_pred ------CCCCCCCCccCcceEEeCCCCCCCCcccccCcchHHHHHHHHHHHHHHHHH
Q 038458 273 ------GQENQGQPFVSKHFNVIDPLRVNNNLGRSVSKGNFFRIRTAFTFRAKGLAR 323 (347)
Q Consensus 273 ------~~~~~~~~~~~~~l~IeDPf~~~~N~~rsv~~~~~~~I~~~F~~a~~~l~~ 323 (347)
++....+.-....++||| |+..|||||.|.-.....|++||++|+++++.
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (384)
T 3hj4_A 311 NDFSASMQNETTQRPSNSPYVVED-FVNYVNCGRRVQASRVRHIQQEFNRLREMLID 366 (384)
T ss_dssp HHHHHHHHHHHHTSCSSSSCCBBC-TTTCCBTTTTSCGGGHHHHHHHHHHHHHHHTT
T ss_pred CccccccCccccccccccceeeee-eccccccceecCccchhHHHHHHHHHHHHHhc
Confidence 000001111234679999 99999999999998999999999999998863
No 5
>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase, UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A* 2q0g_A*
Probab=100.00 E-value=5.7e-54 Score=415.67 Aligned_cols=271 Identities=18% Similarity=0.219 Sum_probs=213.9
Q ss_pred hhHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHchhCC-ceEEEecccc-cCCCCCCCCcceeeecCCCc--------
Q 038458 12 LKAEEITAELIARIQPDPFSEERRNAVAAYVRRLIIQCFP-CQVFTFGSVP-LKTYLPDRDIDLGAFSDDQT-------- 81 (347)
Q Consensus 12 ~~l~~~i~~f~~~l~Pt~~e~~~R~~vi~~l~~~i~~~~p-~~v~~fGS~~-tgl~lp~SDiDl~v~~~~~~-------- 81 (347)
..+++++.+++....|+.+|.+.|+.++++|++++++.|| ++|++|||++ ||+++|+||||+++..+...
T Consensus 26 ~~l~~~l~~~~~~~~~~~~e~~~r~~~~~~l~~~i~~~~p~~~v~~FGS~~vtGl~lp~SDIDl~v~~~~~~~~~~~~~~ 105 (353)
T 2ikf_A 26 AVVGRSLVNSFKQFVSKDLHTRHVDATYRLVLDCVAAVDPLMRLYTFGSTVVYGVHEKGSDVDFVVLNKTDVEDGKGGDA 105 (353)
T ss_dssp HHHHHHHHHHTTTTCC-----CCHHHHHHHHHHHHHHHCTTCEEEEESHHHHHSSCCTTCCEEEEEECHHHHHSTTCCCC
T ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHCCCcEEEEecCccccCCCCCCcceeEEEeecccccccccccc
Confidence 4578999999999999999999999999999999999999 9999999997 99999999999999876310
Q ss_pred -------chhhHHHHHHHHHhhccccccccceeeeEEEe-eecceEEEEee-cCeeEEEeecCCCccchhhhHHHHHHHh
Q 038458 82 -------LKDTWAHLVRDMLENEEKNEHAEFRVKEVQYI-QAEVKIIKCLV-DNFVVDIAFNQLGGLCTLCFLDEVDHLI 152 (347)
Q Consensus 82 -------~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~I-~ArVPIIK~~~-~~i~vDIs~n~~~g~~~s~~l~~i~~~~ 152 (347)
....++..+++.|++.. .+.+|+.| +||||||||++ +|++|||||+|..|+.++.++ ..++
T Consensus 106 ~~~~~~~~~~~~l~~l~~~L~~~~-------~~~~v~~i~~ArVPIiK~~~~~~i~~Dis~~n~~g~~~t~ll---~~~~ 175 (353)
T 2ikf_A 106 ATQVAKGLQADILAKLARVIRQKH-------LSWNVEEVRRTRVPVVRVKGGGAVDFDITAYRRNGVRNSALL---RAYF 175 (353)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHC-------TTSEEEEECSSSSCEEEEECSSSCEEEEEESCCHHHHHHHHH---HHHH
T ss_pred hhhhhhhhHHHHHHHHHHHHHhcC-------CCCceEEecccceeEEEEEcCCCcEEEEEecCccHHHHHHHH---HHHH
Confidence 01345667777777643 23567777 99999999998 899999999999999998888 5667
Q ss_pred ccChhhHHHHHHHHHHHHHhhcccC-CCC-CCCcHHHHHHHHHHHHHhCc--CC--------------------------
Q 038458 153 NENHLFKRSIILIKAWCYYESRILG-GHH-GLISSYALVTLVLYIFHVFN--GS-------------------------- 202 (347)
Q Consensus 153 ~~~p~~r~L~~~lK~Wa~~~~r~ln-~~~-GglsSYal~lMvi~fLQ~~~--~~-------------------------- 202 (347)
..+|++|+|+++||+|| ++|++| ++. ||||||+|++||++|||+.. +.
T Consensus 176 ~~~p~~r~l~~~iK~wa--~~r~l~~~~~gG~lssy~l~lmvi~~LQ~~~~~P~lp~l~~~~~~~~~~~~~~~~~~~~~~ 253 (353)
T 2ikf_A 176 EQNPPCRWLSMSIKRWS--KQTGLNASVIGGSITSYGFNLMVVYYLLQRNHLQFVPPSTIDVSRVEPLPPHLPLEEPADE 253 (353)
T ss_dssp HHSTTHHHHHHHHHHHH--HHTTCBTTSTTCCBCHHHHHHHHHHHHHHTTSSCCCCGGGCCGGGSCSSCCCCCCCCCTTT
T ss_pred HhCccHHHHHHHHHHHH--HHcCCCCCCCCCCchHHHHHHHHHHHHHhcCCCCCcCccccChhhccCCCcCCccccCCCC
Confidence 89999999999999998 788887 688 99999999999999998641 11
Q ss_pred CCChHHHHHHHHhccc-cCCCCCeeEEeeCCcccCCCCCccCCCCCCCCCcccccHh---HHHHHHhhcCCCCCCCCCCC
Q 038458 203 FAGPLEVLYRFLEFFS-KFDWDNFCLSLWGPVPISLLPDVTAEPPRKDGGVLLLSKS---FLDSCRYAYADFPGGQENQG 278 (347)
Q Consensus 203 ~~~p~~lL~~Ff~~Y~-~Fd~~~~~isi~~~~~~~~~~~~~~~~p~~~~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 278 (347)
..+.++||.+||+||| +|||++.+||++.|..+ +++ |.... ..+. ...
T Consensus 254 ~~slg~LL~~Ff~~Y~~~fd~~~~vIsi~~~~~~--------------------~k~~~~w~~~~-~~~~-------~~~ 305 (353)
T 2ikf_A 254 GLELGTQVLDFLHFFLHEFDSDKQVISLNRPGIT--------------------TKEELDWTKSA-EDFA-------RMN 305 (353)
T ss_dssp THHHHHHHHHHHHHHHHTSCTTTEEECSSSSSCE--------------------EHHHHTCSHHH-HTTC-------EET
T ss_pred cccHHHHHHHHHHHhccccCcCceEEEcCCCcce--------------------echhhcccccc-cccc-------ccc
Confidence 1233889999999999 99999999999754322 111 10000 0000 000
Q ss_pred CCccCcceEEeCCCCCCCCcccccCcchHHHHHHHHHHHHHHHH
Q 038458 279 QPFVSKHFNVIDPLRVNNNLGRSVSKGNFFRIRTAFTFRAKGLA 322 (347)
Q Consensus 279 ~~~~~~~l~IeDPf~~~~N~~rsv~~~~~~~I~~~F~~a~~~l~ 322 (347)
.......|||||||+++||+||+|+..++.+|+++|++|++++-
T Consensus 306 ~~~~~~~l~IeDP~~~~~N~~r~v~~~~~~~i~~~f~~A~~~~~ 349 (353)
T 2ikf_A 306 GEKVHYQWCIEDPYELNLNVGRNVTPLKRDFLRRHLEKARDTAL 349 (353)
T ss_dssp TEECCCSSEEBCSSSTTCBTTTTCCHHHHHHHHHHHHHHHTTTT
T ss_pred CCCCcceEEEECCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 01123579999999999999999999999999999999998763
No 6
>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl transferase, editosome, transferase/RNA binding protein complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4 d.218.1.10 PDB: 2b51_A* 2b56_A*
Probab=100.00 E-value=4.2e-51 Score=405.96 Aligned_cols=281 Identities=19% Similarity=0.246 Sum_probs=221.0
Q ss_pred CCCCchhhhHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHchhCC-ceEEEeccc-ccCCCCCCCCcceeeecCCCcc
Q 038458 5 PLDPGRWLKAEEITAELIARIQPDPFSEERRNAVAAYVRRLIIQCFP-CQVFTFGSV-PLKTYLPDRDIDLGAFSDDQTL 82 (347)
Q Consensus 5 ~~~~~~~~~l~~~i~~f~~~l~Pt~~e~~~R~~vi~~l~~~i~~~~p-~~v~~fGS~-~tgl~lp~SDiDl~v~~~~~~~ 82 (347)
+-+|+.|..+.+.|.+....-.+++++.+.|..++++|+.++++.|| ++|++|||+ .+|+++|+||||+|+..++...
T Consensus 11 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~~l~~~v~~~~p~a~v~~FGS~v~~Gl~lp~SDiDl~~~~~~~~~ 90 (468)
T 2b4v_A 11 NPSPDHYAVWGKAIMAENNRRVGPEHMFRTAIRAQQQLQGLADKWTPDAKVYCCGSMVTYGQMERGSDLDLACMFDDPYP 90 (468)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHBCCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEETHHHHHSSCBTTCCEEEEEECSSSSC
T ss_pred CCChHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeeCchhcCCCCCCCceeEEEecCCCCc
Confidence 45688999999999999999999999999999999999999999999 999999999 6999999999999999885221
Q ss_pred --hhhH--HHHHHHHHhhccccccccceeeeEEEe-eecceEEEEe----e-----------------------------
Q 038458 83 --KDTW--AHLVRDMLENEEKNEHAEFRVKEVQYI-QAEVKIIKCL----V----------------------------- 124 (347)
Q Consensus 83 --~~~~--~~~l~~~L~~~~~~~~~~~~~~~v~~I-~ArVPIIK~~----~----------------------------- 124 (347)
..+. ..++...|++.. ..+.+.+++.| +||||||||+ +
T Consensus 91 ~~~~~~~~~~~l~~~L~~~~----~~~~~~~v~~I~~ArVPIIK~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~ 166 (468)
T 2b4v_A 91 SHEVQAKRTDKLRTVIKRYV----PHYLRNNLLGLTEARTPVVKLRFANDEKVARARYTPLSEEEDRKARTALLDVRNQC 166 (468)
T ss_dssp CHHHHHHHHHHHHHHHHTTS----CHHHHTTEEEECSSSSCEEEECCCCHHHHHHHHHSCCCHHHHHHHTEEEEEEESCC
T ss_pred cchhhHHHHHHHHHHHHHhc----cccccceeEeccCCCcceEEEEeccccccccccccccccccccccccccccccccc
Confidence 1111 234777777641 01124578888 9999999997 0
Q ss_pred ----------------------------------------------------------------------------cCee
Q 038458 125 ----------------------------------------------------------------------------DNFV 128 (347)
Q Consensus 125 ----------------------------------------------------------------------------~~i~ 128 (347)
+|++
T Consensus 167 ~~~~~~~~~~~~~~~~n~~~~~~~~~~~~c~~~v~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ld~rf~~~~~gi~ 246 (468)
T 2b4v_A 167 VGDNDVEYIAEKMGRDNVEGIRVDRTTYGCRIAIQCTSKEQMIEAIGFFPDGKIMTRGMREDYTRDVLDVRFVPEMFMYR 246 (468)
T ss_dssp CCHHHHHHHHHHHCGGGEEEEEEEECSSEEEEEEEESSHHHHHHHHTCCCCSSSSCGGGGGGEEEEESCTTSCCGGGSSC
T ss_pred cccccccchhhhcccccccccccccccccccceeecccccchhhhhcccccccccccccccccccccccccccccccceE
Confidence 2688
Q ss_pred EEEeecCCCccchhhhHHHHHHHhccChh-hHHHHHHHHHHHHHhhcccC-CCCCCCcHHHHHHHHHHHHHhCc------
Q 038458 129 VDIAFNQLGGLCTLCFLDEVDHLINENHL-FKRSIILIKAWCYYESRILG-GHHGLISSYALVTLVLYIFHVFN------ 200 (347)
Q Consensus 129 vDIs~n~~~g~~~s~~l~~i~~~~~~~p~-~r~L~~~lK~Wa~~~~r~ln-~~~GglsSYal~lMvi~fLQ~~~------ 200 (347)
|||||| ..|+.||.++ ..|...+|+ +|+|+++||+|| ++|++| ++.||||||+|++|||+|||+..
T Consensus 247 ~DISfn-~~gi~nS~ll---~~y~~~dpr~~r~Lvl~vK~Wa--k~r~Ln~~~~G~LsSYal~lMVI~fLQ~~~~lP~v~ 320 (468)
T 2b4v_A 247 WDISFV-GYGVKNSYLI---RHYLHNGPVAARHTAMAVKAWG--KATNVGAGSGAMLTSYAVTVMFIYYLLVTRQVLWVD 320 (468)
T ss_dssp EEEESC-SHHHHHHHHH---HHHHHHSCTTHHHHHHHHHHHH--HTCC-----CCSSCHHHHHHHHHHHHHHTTSSCCCC
T ss_pred EEEecc-hhHHHHHHHH---HHHHhhChHHHHHHHHHHHHHH--HHcCCCCccCCCccHHHHHHHHHHHHHhcCcCCCCC
Confidence 999998 9999999888 666779999 999999999998 889998 69999999999999999999752
Q ss_pred C-------------CC--------CChHHHHHHHHhccc-cCCCCCeeEEeeCCcccCCCCCccCCCCCCCCCcccccHh
Q 038458 201 G-------------SF--------AGPLEVLYRFLEFFS-KFDWDNFCLSLWGPVPISLLPDVTAEPPRKDGGVLLLSKS 258 (347)
Q Consensus 201 ~-------------~~--------~~p~~lL~~Ff~~Y~-~Fd~~~~~isi~~~~~~~~~~~~~~~~p~~~~g~~~~~~~ 258 (347)
+ .. .+.++||.+||+||| +|||++.+||++.+..+ +++
T Consensus 321 P~vlP~lq~l~~~~~~~p~~~~n~~sLg~LL~~FF~yYg~~Fd~~~~vISir~g~~~--------------------~K~ 380 (468)
T 2b4v_A 321 PWSLPHPAHLPRYPDFSPLYDCDPTELGRLLHGFFIFYAHHFDYEREVVSLNRNRRS--------------------YRS 380 (468)
T ss_dssp GGGSCCGGGSCSSCCCCCCCCCCHHHHHHHHHHHHHHHHHSSCTTTEEBCSSSSSCE--------------------EHH
T ss_pred cccccchhhcccccCCCcccccCccCHHHHHHHHHHHHccccCCCCcEEEecCCcce--------------------ecc
Confidence 0 00 134889999999999 99999999999754322 221
Q ss_pred HHHHHHhhcCCCCCCCCCCCCCccCcceEEeCCCCC----CCCcccccCcchHHHHHHHHHHHHHHHHHHh
Q 038458 259 FLDSCRYAYADFPGGQENQGQPFVSKHFNVIDPLRV----NNNLGRSVSKGNFFRIRTAFTFRAKGLARLL 325 (347)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~IeDPf~~----~~N~~rsv~~~~~~~I~~~F~~a~~~l~~~~ 325 (347)
- .++.. .. ++... ....|||||||++ +||+||+|+..++.+|++||++|++.|.+..
T Consensus 381 ~-------~~w~~-~~-n~~~~-~~~~L~IeDPfd~~~~~~~Nvgr~v~~~~~~~I~~eF~~A~~~L~~~~ 441 (468)
T 2b4v_A 381 D-------IGWNF-PQ-NKKGT-FSYNFCIEDPYEDVGTGGLNLVRHLHPAKFQLVKQEFLRAAQCMERFL 441 (468)
T ss_dssp H-------HTCCC-GG-GEETT-EECSSCBBCSSTTTTTTCCBTTTTCCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred c-------ccccc-cc-cccCC-CcceEEEECCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 0 00000 00 00000 1136999999999 9999999998899999999999999998754
No 7
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=100.00 E-value=1.1e-49 Score=393.43 Aligned_cols=237 Identities=16% Similarity=0.180 Sum_probs=193.1
Q ss_pred hhHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHchhCC-ceEEEecccccCCCCCCCCcceeeecCCCcc--------
Q 038458 12 LKAEEITAELIARIQPDPFSEERRNAVAAYVRRLIIQCFP-CQVFTFGSVPLKTYLPDRDIDLGAFSDDQTL-------- 82 (347)
Q Consensus 12 ~~l~~~i~~f~~~l~Pt~~e~~~R~~vi~~l~~~i~~~~p-~~v~~fGS~~tgl~lp~SDiDl~v~~~~~~~-------- 82 (347)
+.++++|.+|+++++||++|.+.|..++++|++++++.|| |+|.||||++|||++|+||||+|+..++...
T Consensus 132 ~sl~~EI~~f~~~i~PT~eE~~~R~~vv~~le~ii~~~fP~a~V~~FGS~~tGL~lp~SDIDlvl~~~~~~~~~~~~~~g 211 (464)
T 3pq1_A 132 ESIDDQLNTLLKEFQLTEENTKLRYLTCSLIEDMAAAYFPDCIVRPFGSSVNTFGKLGCDLDMFLDLDETRNLSAHKISG 211 (464)
T ss_dssp SSHHHHHHHHHHHHBCCHHHHHHHHHHHHHHHHHHTTTSTTCEEEEEGGGTSSCCBTTCCEEEEEECC-----CCSCEEC
T ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEeCCCccCCCCCCCCeEEEEecCCccccccccccc
Confidence 4589999999999999999999999999999999999999 9999999999999999999999998764210
Q ss_pred -----------------hhhHHHHHHHHHhhccccccccceeeeEEEe-eecceEEEEee--cCeeEEEeecCCCccchh
Q 038458 83 -----------------KDTWAHLVRDMLENEEKNEHAEFRVKEVQYI-QAEVKIIKCLV--DNFVVDIAFNQLGGLCTL 142 (347)
Q Consensus 83 -----------------~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~I-~ArVPIIK~~~--~~i~vDIs~n~~~g~~~s 142 (347)
....+..+++.|++.. ..+.+|+.| +||||||||++ +|++|||||||..|+.|+
T Consensus 212 ~~~le~~~k~l~seR~~~~~iL~~la~~L~~~~------~~~~~v~~I~~ARVPIIKf~~~~tgi~~DIS~nn~~gi~ns 285 (464)
T 3pq1_A 212 NFLMEFQVKNVPSERIATQKILSVLGECLDHFG------PGCVGVQKILNARCPLVRFSHQASGFQCALTTNNRIALTSS 285 (464)
T ss_dssp C---EECCCCCSCHHHHHHHHHHHHHHHHHHSS------TTEEEEEEECSSSSCEEEEEETTTCCEEEEECSCTTHHHHH
T ss_pred chhhhhhhccchhhHHHHHHHHHHHHHHHHhcC------CCCceeEEecCCCCCEEEEEEcCCCeEEEEecCCCcHHHHH
Confidence 0123344555555421 035678888 99999999998 799999999999999999
Q ss_pred hhHHHHHHHhccChhhHHHHHHHHHHHHHhhcccC-CCCCC-CcHHHHHHHHHHHHHhCcCC------------------
Q 038458 143 CFLDEVDHLINENHLFKRSIILIKAWCYYESRILG-GHHGL-ISSYALVTLVLYIFHVFNGS------------------ 202 (347)
Q Consensus 143 ~~l~~i~~~~~~~p~~r~L~~~lK~Wa~~~~r~ln-~~~Gg-lsSYal~lMvi~fLQ~~~~~------------------ 202 (347)
.++ ..|...+|++|+|+++||+|+ ++|++| ++.|| ||||+|++|||+|||++.+.
T Consensus 286 ~ll---~~y~~~dprlr~Lvl~vK~Wa--k~r~Ln~~~~Gg~LsSYsL~lMVI~fLQ~~~ppvLP~Lq~l~~~~~~~~~~ 360 (464)
T 3pq1_A 286 ELL---YIYGALDSRVRALVFSVRCWA--RAHSLTSSIPGAWITNFSLTMMVIFFLQRRSPPILPTLDSLKTLADAEDKC 360 (464)
T ss_dssp HHH---HHHHTTCHHHHHHHHHHHHHH--HHTTSSCC--CCSCCHHHHHHHHHHHHHSCC-------CCSHHHHTTC---
T ss_pred HHH---HHHHHhCccHHHHHHHHHHHH--HHhCCCccccCCCcCcHHHHHHHHHHHHccCCCcCCChHHhccccCcccce
Confidence 887 667789999999999999998 788887 68998 99999999999999987421
Q ss_pred ---------------------CCChHHHHHHHHhccccCCCCCeeEEeeCCcccCCCCCccCCCCCCCCCcccccHhHHH
Q 038458 203 ---------------------FAGPLEVLYRFLEFFSKFDWDNFCLSLWGPVPISLLPDVTAEPPRKDGGVLLLSKSFLD 261 (347)
Q Consensus 203 ---------------------~~~p~~lL~~Ff~~Y~~Fd~~~~~isi~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~~~ 261 (347)
..+.++||.+||+|||+|||++.+|||
T Consensus 361 ~vdg~~~~F~~dl~~l~~~~N~~slgeLL~gFF~yYa~FDf~~~vIsI-------------------------------- 408 (464)
T 3pq1_A 361 VIEGNNCTFVRDLSRIKPSQNTETLELLLKEFFEYFGNFAXXXXXXXX-------------------------------- 408 (464)
T ss_dssp ------------------CCCCCCHHHHHHHHHHHGGGCCCCCCCCCC--------------------------------
T ss_pred eeccccccccccHhhcCCCCCcCCHHHHHHHHHHHHHhCCCccccccc--------------------------------
Confidence 023389999999999999998877653
Q ss_pred HHHhhcCCCCCCCCCCCCCccCcceEEeCCCCCCCCcccccCcchHHHHHHHHHHHHHHHHHH
Q 038458 262 SCRYAYADFPGGQENQGQPFVSKHFNVIDPLRVNNNLGRSVSKGNFFRIRTAFTFRAKGLARL 324 (347)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~l~IeDPf~~~~N~~rsv~~~~~~~I~~~F~~a~~~l~~~ 324 (347)
.+|++|+|+...+.+++.++++|+.+|.+-
T Consensus 409 ---------------------------------~~Nvs~nV~~~~~~r~~~~~r~a~~il~~~ 438 (464)
T 3pq1_A 409 ---------------------------------XXXXXXXVSQSQLQKFVDLARESAWILQQE 438 (464)
T ss_dssp ---------------------------------C-------CHHHHHHHHHHHHHHHHHHHCC
T ss_pred ---------------------------------ccccccccCHHHHHHHHHHHHHHHHHHhhc
Confidence 389999999999999999999999999843
No 8
>1q79_A Poly(A) polymerase alpha; mRNA processing, nucleotidyl transferase, transferase; HET: 3AT; 2.15A {Bos taurus} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1q78_A* 1f5a_A*
Probab=100.00 E-value=4.5e-48 Score=387.81 Aligned_cols=283 Identities=20% Similarity=0.226 Sum_probs=224.6
Q ss_pred CCCCCCCCchhhh----HHHHHHHHHHH--hCCChHHHHHHHHHHHHHHHHHchh----------------CC-ceEEEe
Q 038458 1 SVIRPLDPGRWLK----AEEITAELIAR--IQPDPFSEERRNAVAAYVRRLIIQC----------------FP-CQVFTF 57 (347)
Q Consensus 1 ~~~~~~~~~~~~~----l~~~i~~f~~~--l~Pt~~e~~~R~~vi~~l~~~i~~~----------------~p-~~v~~f 57 (347)
||+.||+.+.... +..++.+++.. +.||+||.+.|++++++|+++++++ .+ ++|++|
T Consensus 21 g~~~pis~~~p~~~d~~~t~~L~~~l~~~~~~ps~ee~~~R~~vl~~L~~lv~~wv~~v~~~~~~~~~~~~~~~~~v~~F 100 (514)
T 1q79_A 21 GITSPISLAAPKETDALLTQKLVETLKPFGVFEEEEELQRRILILGKLNNLVKEWIREISESKNLPQSVIENVGGKIFTF 100 (514)
T ss_dssp SSSCCSCCCCCCHHHHHHHHHHHHHHGGGTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHTTCBCEEEEE
T ss_pred CCCCCCcCCCCCHHHHHhHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhcccCCceEEEe
Confidence 6899999876443 34556666665 7899999999999999999999853 13 999999
Q ss_pred cccccCCCCCCCCcceeeecCCCcchhhHHHHHHHHHhhccccccccceeeeEEEe-eecceEEEEeecCeeEEEeecCC
Q 038458 58 GSVPLKTYLPDRDIDLGAFSDDQTLKDTWAHLVRDMLENEEKNEHAEFRVKEVQYI-QAEVKIIKCLVDNFVVDIAFNQL 136 (347)
Q Consensus 58 GS~~tgl~lp~SDiDl~v~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~I-~ArVPIIK~~~~~i~vDIs~n~~ 136 (347)
||+++|+++|+||||++++.+....++.++..+.++|++.. .+++++.| +|+||||||+.+|++|||+|++.
T Consensus 101 GS~~lG~~~p~SDID~~~v~p~~~~~~dff~~l~~~L~~~~-------~v~~v~~I~~A~VPIIK~~~~gi~vDL~f~~~ 173 (514)
T 1q79_A 101 GSYRLGVHTKGADIDALCVAPRHVDRSDFFTSFYDKLKLQE-------EVKDLRAVEEAFVPVIKLCFDGIEIDILFARL 173 (514)
T ss_dssp HHHHHTCCCTTCCEEEEEEECTTSCHHHHTTHHHHHHHTCT-------TEEEEEEETTSSSCEEEEEETTEEEEEEEEEC
T ss_pred eeeccCCCCCCCceeEEEecCCcCCHHHHHHHHHHHHhcCc-------cCceEEEecCCcccEEEEEECCeeEEEEEecC
Confidence 99999999999999999999975556778888888888743 47889999 99999999999999999999875
Q ss_pred Ccc--------c-----------------hhhhHHHHHHHhccChhhHHHHHHHHHHHHHhhcccC-CCCCCCcHHHHHH
Q 038458 137 GGL--------C-----------------TLCFLDEVDHLINENHLFKRSIILIKAWCYYESRILG-GHHGLISSYALVT 190 (347)
Q Consensus 137 ~g~--------~-----------------~s~~l~~i~~~~~~~p~~r~L~~~lK~Wa~~~~r~ln-~~~GglsSYal~l 190 (347)
.+. . ..+..+++.++++.++.+|.++++||+|| ++|++| ++.||||||+|++
T Consensus 174 ~~~~~p~~l~l~~~~~L~~ld~~~~~slng~r~~d~I~~~vp~~~~fr~llr~IK~Wa--k~Rgi~~~~~G~lgg~s~~l 251 (514)
T 1q79_A 174 ALQTIPEDLDLRDDSLLKNLDIRAIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWA--KRHNIYSNILGFLGGVSWAM 251 (514)
T ss_dssp SCSSBCTTCCTTCGGGGTTCCHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHH--HHTTCBCTTTTSBCHHHHHH
T ss_pred CcccCcccccCCchhhhcccchhhhhhhhhHHHHHHHHHHccCcHHHHHHHHHHHHHH--HHcCCCccccCCccHHHHHH
Confidence 431 1 11234566778888999999999999998 789998 5899999999999
Q ss_pred HHHHHHHhCcCCCCChHHHHHHHHhccccCCCCCeeEEeeCCcccCCCCCccCCCCCCCCCcccccHhHHHHHHhhcCCC
Q 038458 191 LVLYIFHVFNGSFAGPLEVLYRFLEFFSKFDWDNFCLSLWGPVPISLLPDVTAEPPRKDGGVLLLSKSFLDSCRYAYADF 270 (347)
Q Consensus 191 Mvi~fLQ~~~~~~~~p~~lL~~Ff~~Y~~Fd~~~~~isi~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~~~~~~~~~~~~ 270 (347)
||+++||.+|. .++++||.+||+|||+|||.+.++ + ....+ |.+-. -.+.
T Consensus 252 LVa~~~Ql~P~--~s~~~LL~~FF~~y~~~dw~~pV~-l------~~~~~----------~~l~~-----------~~w~ 301 (514)
T 1q79_A 252 LVARTCQLYPN--AIASTLVHKFFLVFSKWEWPNPVL-L------KQPEE----------CNLNL-----------PVWD 301 (514)
T ss_dssp HHHHHHHHSTT--CCHHHHHHHHHHHHHSCCTTSCBC-S------SCCCC----------CSSCC-----------CCCC
T ss_pred HHHHHHHhCCC--CCHHHHHHHHHHHHhcCCCCCCeE-e------cccCC----------CCCCC-----------cccC
Confidence 99999999875 478999999999999999987332 2 11100 10000 0000
Q ss_pred CCCCCCCCCCccCcceEEeCCCCCCCCcccccCcchHHHHHHHHHHHHHHHHHHhc
Q 038458 271 PGGQENQGQPFVSKHFNVIDPLRVNNNLGRSVSKGNFFRIRTAFTFRAKGLARLLD 326 (347)
Q Consensus 271 ~~~~~~~~~~~~~~~l~IeDPf~~~~N~~rsv~~~~~~~I~~~F~~a~~~l~~~~~ 326 (347)
++. ........|+|+||++|.+|+|++|++.++..|++||++|+++|.+++.
T Consensus 302 p~~----~~~dr~~~m~IidP~~P~~N~~~nVs~st~~~I~~Ef~rA~~il~~i~~ 353 (514)
T 1q79_A 302 PRV----NPSDRYHLMPIITPAYPQQNSTYNVSVSTRMVMVEEFKQGLAITDEILL 353 (514)
T ss_dssp TTT----CGGGGGCSSCBBCSSSSCCBTTTTCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred Ccc----CCcCcccceeEeCCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 000 0001124599999999999999999999999999999999999998874
No 9
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A*
Probab=100.00 E-value=1.3e-47 Score=385.76 Aligned_cols=283 Identities=18% Similarity=0.232 Sum_probs=227.8
Q ss_pred CCCCCCCCchhhh----HHHHHHHHHHH--hCCChHHHHHHHHHHHHHHHHHchhC-----------------CceEEEe
Q 038458 1 SVIRPLDPGRWLK----AEEITAELIAR--IQPDPFSEERRNAVAAYVRRLIIQCF-----------------PCQVFTF 57 (347)
Q Consensus 1 ~~~~~~~~~~~~~----l~~~i~~f~~~--l~Pt~~e~~~R~~vi~~l~~~i~~~~-----------------p~~v~~f 57 (347)
||+.||+.+.+.. +..++.+++.. +.||+||.+.|+.++++|+++++++. +++|++|
T Consensus 8 g~t~pis~~~p~~~d~~~~~~L~~~l~~~~~~ps~ee~~~R~~vl~~L~~lv~~w~~~v~~~~~~~~~~~~~~~~~V~~F 87 (530)
T 2hhp_A 8 GITGPVSTVGATAAENKLNDSLIQELKKEGSFETEQETANRVQVLKILQELAQRFVYEVSKKKNMSDGMARDAGGKIFTY 87 (530)
T ss_dssp CSSCCSCCCCCCHHHHHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHTBCEEEEE
T ss_pred ccCCCCcCCCCChHHhhhhHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhccccCceEEEe
Confidence 7999999888776 46667777777 89999999999999999999998731 3899999
Q ss_pred cccccCCCCCCCCcceeeecCCCcchhhHHHHHHHHHhhccccccccceeeeEEEe-eecceEEEEeecCeeEEEeecCC
Q 038458 58 GSVPLKTYLPDRDIDLGAFSDDQTLKDTWAHLVRDMLENEEKNEHAEFRVKEVQYI-QAEVKIIKCLVDNFVVDIAFNQL 136 (347)
Q Consensus 58 GS~~tgl~lp~SDiDl~v~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~I-~ArVPIIK~~~~~i~vDIs~n~~ 136 (347)
||+++|+++|+||||++++.+....++.++..+.++|++.. .+++++.| +|+||||||+.+|++|||+|++.
T Consensus 88 GSy~lG~~~p~SDID~~v~~p~~~~~~dff~~l~~~L~~~~-------~v~~v~~I~~A~VPIIK~~~~gi~vDL~f~~~ 160 (530)
T 2hhp_A 88 GSYRLGVHGPGSDIDTLVVVPKHVTREDFFTVFDSLLRERK-------ELDEIAPVPDAFVPIIKIKFSGISIDLICARL 160 (530)
T ss_dssp HHHHHTCCCTTCCEEEEEEECTTCCHHHHHHHHHHHHHTCT-------TEEEEEEETTSSSCEEEEEETTEEEEEEEEEC
T ss_pred cccccCCCCCCCceeEEEecCCcCCHHHHHHHHHHHHhcCC-------CCceEEEecCCcccEEEEEECCEeeEEEEecc
Confidence 99999999999999999999975556778888888888643 57889999 99999999999999999999875
Q ss_pred Cc--------cc-----------------hhhhHHHHHHHhccChhhHHHHHHHHHHHHHhhcccC-CCCCCCcHHHHHH
Q 038458 137 GG--------LC-----------------TLCFLDEVDHLINENHLFKRSIILIKAWCYYESRILG-GHHGLISSYALVT 190 (347)
Q Consensus 137 ~g--------~~-----------------~s~~l~~i~~~~~~~p~~r~L~~~lK~Wa~~~~r~ln-~~~GglsSYal~l 190 (347)
++ +. ..+..+.+.++++.++.+|.++++||+|| ++|++| ++.||+|||+|++
T Consensus 161 ~~~~ip~~l~l~~~~~L~~ld~~~~~slng~r~~d~I~~~vp~~~~fr~ll~~IK~Wa--k~Rgl~~~~~G~lgg~~~~~ 238 (530)
T 2hhp_A 161 DQPQVPLSLTLSDKNLLRNLDEKDLRALNGTRVTDEILELVPKPNVFRIALRAIKLWA--QRRAVYANIFGFPGGVAWAM 238 (530)
T ss_dssp SSSCBCTTCCSCCGGGGTTCCHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHH--HHTTCCCGGGTSCCHHHHHH
T ss_pred ccccCCcccCCCchhhhhccchhhhhccchHHHHHHHHHHccCcHHHHHHHHHHHHHH--HHcCCCcccccCCcHHHHHH
Confidence 31 11 12234566788889999999999999998 789998 5899999999999
Q ss_pred HHHHHHHhCcCCCCChHHHHHHHHhccccCCCCCeeEEeeCCcccCCCCCccCCCCCCCCCcccccHhHHHHHHhhcCCC
Q 038458 191 LVLYIFHVFNGSFAGPLEVLYRFLEFFSKFDWDNFCLSLWGPVPISLLPDVTAEPPRKDGGVLLLSKSFLDSCRYAYADF 270 (347)
Q Consensus 191 Mvi~fLQ~~~~~~~~p~~lL~~Ff~~Y~~Fd~~~~~isi~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~~~~~~~~~~~~ 270 (347)
||+++||.+|. .++++||.+||+|||+|||.+ .|.+..+ . .|.+-. -.+.
T Consensus 239 LVa~~lQl~P~--~s~~~LL~~FF~~y~~~dw~~-pV~l~~~------~----------~g~~~~-----------~~w~ 288 (530)
T 2hhp_A 239 LVARICQLYPN--ACSAVILNRFFIILSEWNWPQ-PVILKPI------E----------DGPLQV-----------RVWN 288 (530)
T ss_dssp HHHHHHHHSTT--CCHHHHHHHHHHHHHHCCTTS-CEESSCC------C----------CCSSCS-----------CCCC
T ss_pred HHHHHHhcCCC--CCHHHHHHHHHHHHhcCCCCC-ceEeccc------C----------CCCccc-----------cccC
Confidence 99999999875 478999999999999999986 3333211 0 010000 0000
Q ss_pred CCCCCCCCCCccCcceEEeCCCCCCCCcccccCcchHHHHHHHHHHHHHHHHHHhc
Q 038458 271 PGGQENQGQPFVSKHFNVIDPLRVNNNLGRSVSKGNFFRIRTAFTFRAKGLARLLD 326 (347)
Q Consensus 271 ~~~~~~~~~~~~~~~l~IeDPf~~~~N~~rsv~~~~~~~I~~~F~~a~~~l~~~~~ 326 (347)
++. ........|+|+||++|.+|+|++|++.++..|++||++|+++|.+++.
T Consensus 289 p~~----~~~d~~~~m~Ii~P~~P~~N~a~nVs~st~~~I~~Ef~rA~~ll~~i~~ 340 (530)
T 2hhp_A 289 PKI----YAQDRSHRMPVITPAYPSMCATHNITESTKKVILQEFVRGVQITNDIFS 340 (530)
T ss_dssp TTT----CHHHHTCSSCEECSSSSCCBTTTTCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccc----CCCCCccceeEECCCCCCCccCccCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 000 0000124699999999999999999999999999999999999998863
No 10
>1r89_A TRNA nucleotidyltransferase; CCA adding enzyme, incoming nucleotide, nucleotidyltransfera superfamily; HET: CTP; 1.80A {Archaeoglobus fulgidus} SCOP: a.160.1.3 d.218.1.7 d.58.16.2 PDB: 1r8a_A 1r8b_A* 1r8c_A* 1sz1_A* 1tfw_A* 1tfy_A* 1uet_A 1ueu_A* 1uev_A* 2dr5_A 2dr7_A 2dr8_A* 2dr9_A 2dra_A* 2drb_A 2dvi_A* 2zh1_A 2zh2_A 2zh3_A 2zh4_A ...
Probab=99.57 E-value=2.8e-13 Score=132.52 Aligned_cols=235 Identities=16% Similarity=0.172 Sum_probs=152.7
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHchhCCceEEEecccccCCCCCC-CCcceeeecCCCcchhhHHHHHHH
Q 038458 14 AEEITAELIARIQPDPFSEERRNAVAAYVRRLIIQCFPCQVFTFGSVPLKTYLPD-RDIDLGAFSDDQTLKDTWAHLVRD 92 (347)
Q Consensus 14 l~~~i~~f~~~l~Pt~~e~~~R~~vi~~l~~~i~~~~p~~v~~fGS~~tgl~lp~-SDiDl~v~~~~~~~~~~~~~~l~~ 92 (347)
+|+.+.+|++.|.|+++|.+.=....+.|...|++ +++++..-||++.|++|++ |||||.+..+.....+++...-..
T Consensus 3 ~~~~~~~~l~~i~P~~~E~~~~~~~~~~I~~~L~~-~~~~v~~~GS~AkgT~Lrg~sDIDIfv~f~~~~~~e~l~~~~l~ 81 (437)
T 1r89_A 3 VEEILEKALELVIPDEEEVRKGREAEEELRRRLDE-LGVEYVFVGSYARNTWLKGSLEIDVFLLFPEEFSKEELRERGLE 81 (437)
T ss_dssp HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHH-HTCCEEEEHHHHHTCCCTTCCEEEEEEEECTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHh-CCCeEEEeccccCCCcCCCCCCceEEEEcCCCCCHHHHHHHHHH
Confidence 57889999999999999998888888998888887 6789999999999999975 999999999864333433222222
Q ss_pred HHhhccccccccceeeeEEEe-eecceEEEEeecCeeEEEe--ecCCCc--cchh-hhHHHHHHHhccChh-hHHHHHHH
Q 038458 93 MLENEEKNEHAEFRVKEVQYI-QAEVKIIKCLVDNFVVDIA--FNQLGG--LCTL-CFLDEVDHLINENHL-FKRSIILI 165 (347)
Q Consensus 93 ~L~~~~~~~~~~~~~~~v~~I-~ArVPIIK~~~~~i~vDIs--~n~~~g--~~~s-~~l~~i~~~~~~~p~-~r~L~~~l 165 (347)
+.+... ++.. + .|.-|=|....+|+++||- +.-..| +.++ .....-..++..... ++.+++++
T Consensus 82 ~~~e~l---------~~~~-~~ya~hpyV~~~f~g~~vDVVP~y~v~~g~~~~tavDrtp~H~~fv~~r~~~~~~~VRLL 151 (437)
T 1r89_A 82 IGKAVL---------DSYE-IRYAEHPYVHGVVKGVEVDVVPCYKLKEPKNIKSAVDRTPFHHKWLEGRIKGKENEVRLL 151 (437)
T ss_dssp HHHHHS---------SSEE-EEESSSEEEEEEETTEEEEEEEEECCSSSSCCCSHHHHHHHHHHHHTTTSTTCHHHHHHH
T ss_pred HHHHHH---------HHhh-hhccCCceEEEEecceEEEEEEEEEccCCccccccccCcHHHHHHHHhhhhhhhhHHHHH
Confidence 333211 0111 2 5667777777789999984 332222 3222 111111233433211 78999999
Q ss_pred HHHHHHhhccc-CC--CCCCCcHHHHHHHHHHHHHhCcCCCCChHHHHHHHHhccccCCCCCeeEEeeCCcccCCCCCcc
Q 038458 166 KAWCYYESRIL-GG--HHGLISSYALVTLVLYIFHVFNGSFAGPLEVLYRFLEFFSKFDWDNFCLSLWGPVPISLLPDVT 242 (347)
Q Consensus 166 K~Wa~~~~r~l-n~--~~GglsSYal~lMvi~fLQ~~~~~~~~p~~lL~~Ff~~Y~~Fd~~~~~isi~~~~~~~~~~~~~ 242 (347)
|+|. +..+. ++ ..+|+|||++=||+++| . +=..+|..+.+|-. ...|.+. .
T Consensus 152 K~f~--k~~~~ygse~k~~gfSsYllELLv~~y-----G---~f~~vl~~~~~w~~-----~~~Id~~-----~------ 205 (437)
T 1r89_A 152 KGFL--KANGIYGAEYKVRGFSGYLCELLIVFY-----G---SFLETVKNARRWTR-----RTVIDVA-----K------ 205 (437)
T ss_dssp HHHH--HHTTCBCCSTTTCCBCHHHHHHHHHHH-----S---SHHHHHHHHTTCCT-----TEEEEGG-----G------
T ss_pred HHHH--HhCCcCCCcccCCCCCHHHHHHHHHHH-----c---CHHHHHHHHHHhCC-----CeEEecC-----C------
Confidence 9995 55443 43 67899999999999993 1 11234444433221 1122111 0
Q ss_pred CCCCCCCCCcccccHhHHHHHHhhcCCCCCCCCCCCCCccCcceEEeCCCCCCCCcccccCcchHHHHHHHHHHHHHH
Q 038458 243 AEPPRKDGGVLLLSKSFLDSCRYAYADFPGGQENQGQPFVSKHFNVIDPLRVNNNLGRSVSKGNFFRIRTAFTFRAKG 320 (347)
Q Consensus 243 ~~~p~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~IeDPf~~~~N~~rsv~~~~~~~I~~~F~~a~~~ 320 (347)
++ ..+ ..++.|.||.+|++|||.+++..++..+..+-+...+.
T Consensus 206 --------~~--------------------------~~~-~~PlvViDPvDp~rNVAa~~s~~~~~~~~~~a~~~l~~ 248 (437)
T 1r89_A 206 --------GE--------------------------VRK-GEEFFVVDPVDEKRNVAANLSLDNLARFVHLCREFMEA 248 (437)
T ss_dssp --------TE--------------------------EEE-CSSCEEEETTEEEEETTTTCCHHHHHHHHHHHHHHHHS
T ss_pred --------Cc--------------------------ccC-CCCEEEECCCCCCCchhhcCCHHHHHHHHHHHHHHHhC
Confidence 00 001 24689999999999999999988887777766655443
No 11
>1px5_A 2'-5'-oligoadenylate synthetase 1; 5-stranded antiparalel beta sheet, four helix bundle, transferase; HET: YCM; 1.74A {Sus scrofa} SCOP: a.160.1.2 d.218.1.6
Probab=99.46 E-value=1.1e-12 Score=126.23 Aligned_cols=199 Identities=21% Similarity=0.277 Sum_probs=112.3
Q ss_pred HHHHHHH-HHhCCChHHHHHHHHHHHHHHHHHchh-C-----C---ceEEEecccccCCCCC-CCCcceeeecCCCcch-
Q 038458 16 EITAELI-ARIQPDPFSEERRNAVAAYVRRLIIQC-F-----P---CQVFTFGSVPLKTYLP-DRDIDLGAFSDDQTLK- 83 (347)
Q Consensus 16 ~~i~~f~-~~l~Pt~~e~~~R~~vi~~l~~~i~~~-~-----p---~~v~~fGS~~tgl~lp-~SDiDl~v~~~~~~~~- 83 (347)
.++.+|+ +.|+|++++...-...++.|...|++. + | .++...||++.|++++ .|||||+|..+.....
T Consensus 9 ~~l~~fi~~~l~p~~~~~~~i~~~~~~I~~~L~~~~~~~~~~~~~v~~v~~~GSyargT~lrg~sDiDlvV~l~~~~~~~ 88 (349)
T 1px5_A 9 RDLDKFIEDHLLPNTXFRTQVKEAIDIVXRFLKERCFQGTADPVRVSKVVKGGSSGKGTTLRGRSDADLVVFLTKLTSFE 88 (349)
T ss_dssp GGHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEEEEEC--------CEEEEEEEEEESCSCTT
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhhhcccccCCcceEEEEEecCcCCCcccCCCCceeEEEEECCCCchh
Confidence 4577888 899999988877777888888888764 2 2 4778899999999997 5999999999863211
Q ss_pred ------hhHHHHHHHHHhhccccccccceeeeEEEe--eecceE-EEEee------cCeeEEEee--cCCCcc------c
Q 038458 84 ------DTWAHLVRDMLENEEKNEHAEFRVKEVQYI--QAEVKI-IKCLV------DNFVVDIAF--NQLGGL------C 140 (347)
Q Consensus 84 ------~~~~~~l~~~L~~~~~~~~~~~~~~~v~~I--~ArVPI-IK~~~------~~i~vDIs~--n~~~g~------~ 140 (347)
..+++.+.+.|+...... .+.+ +.++. .-+.|- +.+.. .++++||-- ++.+.+ .
T Consensus 89 ~~~~~~~~~l~~i~~~L~~~~~~~--~~~~-~~ev~~~~~~~p~~v~~~~~~~~~~~~~~vDVvPa~~~l~~~~~~~~~~ 165 (349)
T 1px5_A 89 DQLRRRGEFIQEIRRQLEACQREQ--KFKV-TFEVQSPRRENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPN 165 (349)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHC--CCSS-EEEECCC------CCEEEEEETTTTEEEEEEEEEEECSSCSCCTTSCCC
T ss_pred hHHhhHHHHHHHHHHHHHHhhhhh--cccc-ceeEecccccCCceEEEEEEccCcCCceEEEEEEehhhhcccccccCCC
Confidence 234455555565421111 1111 12221 113452 45543 468899643 432211 0
Q ss_pred hh--------------------hhHHHHHHHh-ccChhhHHHHHHHHHHHHHhhcccCCCCCCCcHHHHHHHHHHHHHhC
Q 038458 141 TL--------------------CFLDEVDHLI-NENHLFKRSIILIKAWCYYESRILGGHHGLISSYALVTLVLYIFHVF 199 (347)
Q Consensus 141 ~s--------------------~~l~~i~~~~-~~~p~~r~L~~~lK~Wa~~~~r~ln~~~GglsSYal~lMvi~fLQ~~ 199 (347)
.. .+...=..++ .....++.|++++|+|. +........++++||+|-+|+++.....
T Consensus 166 ~~~y~~li~~~~~~~~~g~~~~~~~~~h~~~v~~~~~~~k~lIRLlK~W~--~~~~~~~~~~~~ssy~lELL~~~a~e~~ 243 (349)
T 1px5_A 166 PEIYVQLIKECKSRGKEGEFSTCFTELQRDFLRNRPTKLKSLIRLVKHWY--QTCKKTHGNKLPPQYALELLTVYAWEQG 243 (349)
T ss_dssp HHHHHHHHHHHHHHTCTTTTGGGGHHHHHHHHHSSCHHHHHHHHHHHHHH--HHHHTTCSSCCCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhccccccCccchhcCHHHHHHHHHhCcHHHHHHHHHHHHHH--HHhhhcccCCCCChHHHHHHHHHHHHhC
Confidence 00 1111001122 23457899999999995 3333222457899999999999988764
Q ss_pred cCC-CCChHHHHHHHHhcccc
Q 038458 200 NGS-FAGPLEVLYRFLEFFSK 219 (347)
Q Consensus 200 ~~~-~~~p~~lL~~Ff~~Y~~ 219 (347)
... -.+..+-+..+|++-.+
T Consensus 244 ~~~~~~~~~~~f~~vle~l~~ 264 (349)
T 1px5_A 244 SRKTDFSTAQGFQTVLELVLK 264 (349)
T ss_dssp TCCSSCCHHHHHHHHHHHHHT
T ss_pred CCccCCCHHHHHHHHHHHHHh
Confidence 322 12345667777776654
No 12
>4at7_A Interleukin enhancer-binding factor 2; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_A* 4at9_A* 4atb_A*
Probab=98.16 E-value=0.00026 Score=67.01 Aligned_cols=252 Identities=14% Similarity=0.111 Sum_probs=155.5
Q ss_pred chhhhHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHchhC--C-------ceEEEecccccCCCCCC-CCcceeeecC
Q 038458 9 GRWLKAEEITAELIARIQPDPFSEERRNAVAAYVRRLIIQCF--P-------CQVFTFGSVPLKTYLPD-RDIDLGAFSD 78 (347)
Q Consensus 9 ~~~~~l~~~i~~f~~~l~Pt~~e~~~R~~vi~~l~~~i~~~~--p-------~~v~~fGS~~tgl~lp~-SDiDl~v~~~ 78 (347)
.+-..+.+.|.+=-+.|.||++|...=..++++|+.++.... | ..|...||++.|+.+.+ -|+|+||++.
T Consensus 22 ~~d~~~~~~llkr~~~l~Ps~eEq~~v~~lv~kI~~~ld~liv~pg~~e~~L~~V~rVGs~aKgtll~G~~~~dlVvl~k 101 (364)
T 4at7_A 22 PDETSFSEALLKRNQDLAPNSAEQASILSLVTKINNVIDNLIVAPGTFEVQIEEVRQVGSYKKGTMTTGHNVADLVVILK 101 (364)
T ss_dssp CCCHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSCEEEEEEEHHHHHTCCCTTCCEEEEEEEES
T ss_pred CChHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHHHHHHhhhcCCCccccccceeEEeccccCCceecCCCceeEEEEec
Confidence 366788999999999999999999988889999998887642 2 58999999999999975 6789999998
Q ss_pred CCcchh---hHHHHHHHHHhhccccccccceee--eEEEeeecceEEEEee-----------cCeeEE--EeecCCCccc
Q 038458 79 DQTLKD---TWAHLVRDMLENEEKNEHAEFRVK--EVQYIQAEVKIIKCLV-----------DNFVVD--IAFNQLGGLC 140 (347)
Q Consensus 79 ~~~~~~---~~~~~l~~~L~~~~~~~~~~~~~~--~v~~I~ArVPIIK~~~-----------~~i~vD--Is~n~~~g~~ 140 (347)
.....+ .+.++|.+-|+.....+....... .+.+.++. +.+++.. ...+.| .+.....+++
T Consensus 102 ~lPT~e~v~~L~~kV~e~L~~q~~~e~~~~~~~e~~~~I~~~~-~~v~i~It~tsp~lrk~dp~~~Ld~~~cl~aLaalR 180 (364)
T 4at7_A 102 ILPTLEAVAALGNKVVESLRAQDPSEVLTMLTNETGFEISSSD-ATVKILITTVPPNLRKLDPELHLDIKVLQSALAAIR 180 (364)
T ss_dssp SCCBHHHHHHHHHHHHHHHHHHCTTSCCEEEEETTEEEEECSS-CEEEEEEEECHHHHHTCCTTTBCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhhhhccccceeeccCcceEEEecCC-CcEEEEEEeCChhhccCChhHhcCHHHHHHHHHHhh
Confidence 754443 234555555554322111110111 11111222 2233332 111221 2222333444
Q ss_pred hhhhHHHHHHHhccChhhHHHHHHHHHHHHHhhcccCCCCCCCcHHHHHHHHHHHHHhCcC-CCCChHHHHHHHHhcccc
Q 038458 141 TLCFLDEVDHLINENHLFKRSIILIKAWCYYESRILGGHHGLISSYALVTLVLYIFHVFNG-SFAGPLEVLYRFLEFFSK 219 (347)
Q Consensus 141 ~s~~l~~i~~~~~~~p~~r~L~~~lK~Wa~~~~r~ln~~~GglsSYal~lMvi~fLQ~~~~-~~~~p~~lL~~Ff~~Y~~ 219 (347)
.++|.+ .. ..+..++.++.++|.. .+|. +..+.|+.|++-+++.+-+-..+. ...++++.+.++|+.-+.
T Consensus 181 hAkWfq---~n-a~~s~v~~lIRIlkDl---c~R~--~~w~pL~~waLELL~~~Ai~s~~~~~~l~~~~afRRVLElLAs 251 (364)
T 4at7_A 181 HARWFE---EN-ASQSTVKVLIRLLKDL---RIRF--PGFEPLTPWILDLLGHYAVMNNPTRQPLALNVAYRRCLQILAA 251 (364)
T ss_dssp HHHHHH---HH-CCCHHHHHHHHHHHHH---HHHC--GGGTTCCHHHHHHHHHHHHHSSTTSSCCCHHHHHHHHHHHHHT
T ss_pred hhHHHH---hh-ccccccceeehhhHHH---HHhc--CCcCCCCHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHh
Confidence 444442 22 2346677899999974 3443 223579999999999988876432 235678889998875430
Q ss_pred CCCCCeeEEeeCCcccCCCCCccCCCCCCCCCcccccHhHHHHHHhhcCCCCCCCCCCCCCccCcceEEeCCCCC-CCCc
Q 038458 220 FDWDNFCLSLWGPVPISLLPDVTAEPPRKDGGVLLLSKSFLDSCRYAYADFPGGQENQGQPFVSKHFNVIDPLRV-NNNL 298 (347)
Q Consensus 220 Fd~~~~~isi~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~IeDPf~~-~~N~ 298 (347)
| +++ ++.-.|.||-+. +.|+
T Consensus 252 -------------------------------G-ill---------------------------p~~~Gi~DPCE~~~~~v 272 (364)
T 4at7_A 252 -------------------------------G-LFL---------------------------PGSVGITDPCESGNFRV 272 (364)
T ss_dssp -------------------------------T-TTS---------------------------TTBCCCBCTTSSSCCBG
T ss_pred -------------------------------C-ccc---------------------------CCCCCCcCCCCCCCcch
Confidence 1 000 011237899997 5677
Q ss_pred ccccCcchHHHHHHHHHHHHHHH-----HHHhcCCC
Q 038458 299 GRSVSKGNFFRIRTAFTFRAKGL-----ARLLDCPN 329 (347)
Q Consensus 299 ~rsv~~~~~~~I~~~F~~a~~~l-----~~~~~~~~ 329 (347)
...++....+.|...-+.+.+.+ .++|+++.
T Consensus 273 ~~~lt~qq~e~it~sAQ~~LRllafgq~~kVLG~e~ 308 (364)
T 4at7_A 273 HTVMTLEQQDMVCYTAQTLVRILSHGGFRKILGQEG 308 (364)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHTTCHHHHHTSSS
T ss_pred hccCCHHHHHHHHHHHHHHHHHHHhcCcceecccCC
Confidence 77777655567777777666665 36666543
No 13
>1no5_A Hypothetical protein HI0073; structural genomics, nucleotidyl transferase structure 2 function project, S2F, unknown function; 1.80A {Haemophilus influenzae} SCOP: d.218.1.5
Probab=98.05 E-value=1e-05 Score=64.90 Aligned_cols=43 Identities=28% Similarity=0.386 Sum_probs=36.9
Q ss_pred HHHHHHHHHHchhCC-ceEEEecccccCCCCCCCCcceeeecCC
Q 038458 37 AVAAYVRRLIIQCFP-CQVFTFGSVPLKTYLPDRDIDLGAFSDD 79 (347)
Q Consensus 37 ~vi~~l~~~i~~~~p-~~v~~fGS~~tgl~lp~SDiDl~v~~~~ 79 (347)
..++.++..+++.++ ..+.+|||++.|-+.|+||||++|..+.
T Consensus 12 ~~~~~i~~~l~~~~~v~~v~LFGS~ArG~~~~~SDIDl~V~~~~ 55 (114)
T 1no5_A 12 EELAIVKTILQQLVPDYTVWAFGSRVKGKAKKYSDLDLAIISEE 55 (114)
T ss_dssp HHHHHHHHHHHHHCTTSEEEEEGGGTTTCCCTTCCEEEEEECSS
T ss_pred HHHHHHHHHHHHhCCCCEEEEEeccCCCCCCCCCCeEEEEEeCC
Confidence 345567777777777 8999999999999999999999999875
No 14
>1ylq_A Putative nucleotidyltransferase, hypothetical Pro AF0614; structural genomics, PSI, protein ST initiative; 2.02A {Archaeoglobus fulgidus} SCOP: d.218.1.5
Probab=97.95 E-value=1.1e-05 Score=62.68 Aligned_cols=42 Identities=21% Similarity=0.330 Sum_probs=37.5
Q ss_pred HHHHHHHHHchhCC-ceEEEecccccCCCCCC-CCcceeeecCC
Q 038458 38 VAAYVRRLIIQCFP-CQVFTFGSVPLKTYLPD-RDIDLGAFSDD 79 (347)
Q Consensus 38 vi~~l~~~i~~~~p-~~v~~fGS~~tgl~lp~-SDiDl~v~~~~ 79 (347)
+++.+...+++.+| ..+.+|||++.|-+.|+ ||||++|..+.
T Consensus 3 ~l~~i~~~l~~~~~~~~v~LFGS~ArG~~~~~~SDiDllV~~~~ 46 (96)
T 1ylq_A 3 HMKEIKEITKKDVQDAEIYLYGSVVEGDYSIGLSDIDVAIVSDV 46 (96)
T ss_dssp HHHHHHHHHHHHCTTCEEEEESHHHHCCSSSCCCSEEEEEECGG
T ss_pred HHHHHHHHHHHHcCCcEEEEEEEEEeCCCCCCCCceEEEEEeCC
Confidence 46778888888888 89999999999999999 99999998874
No 15
>1wot_A Putative minimal nucleotidyltransferase; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.218.1.5
Probab=97.68 E-value=2.8e-05 Score=60.59 Aligned_cols=30 Identities=30% Similarity=0.311 Sum_probs=27.4
Q ss_pred CC-ceEEEecccccCCCCCCCCcceeeecCC
Q 038458 50 FP-CQVFTFGSVPLKTYLPDRDIDLGAFSDD 79 (347)
Q Consensus 50 ~p-~~v~~fGS~~tgl~lp~SDiDl~v~~~~ 79 (347)
++ ..+..|||++.|-+.|+||||++|....
T Consensus 23 ~~v~~v~LFGS~arG~~~~~SDiDl~V~~~~ 53 (98)
T 1wot_A 23 HGAVRVRVFGSVARGEAREDSDLDLLVAFEE 53 (98)
T ss_dssp HTCSSCEECSHHHHTCCCTTCCCEEEECCCS
T ss_pred cCCcEEEEEccccCCCCCCCCCEEEEEEeCC
Confidence 46 8999999999999999999999998764
No 16
>2rff_A Putative nucleotidyltransferase; NP_343093.1, nucleotidyltransferase domain, structural genomics; HET: MSE; 1.40A {Sulfolobus solfataricus P2}
Probab=97.65 E-value=4.2e-05 Score=61.08 Aligned_cols=46 Identities=24% Similarity=0.399 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHc---hhCC--ceEEEecccccCCCCCCCCcceeeecCC
Q 038458 34 RRNAVAAYVRRLII---QCFP--CQVFTFGSVPLKTYLPDRDIDLGAFSDD 79 (347)
Q Consensus 34 ~R~~vi~~l~~~i~---~~~p--~~v~~fGS~~tgl~lp~SDiDl~v~~~~ 79 (347)
.+..+++.+++.+. +.+| ..+..|||++.|-+.|+||||++|....
T Consensus 11 ~~~~i~~~l~~~~~~l~~~~~~v~~v~LFGS~ArG~~~~~SDIDl~V~~~~ 61 (111)
T 2rff_A 11 SQIRMLKLAKEIVEEVASSFPNLEEVYIFGSRARGDYLDTSDIDILFVFKG 61 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTEEEEEEESHHHHSCCCTTCCEEEEEEESS
T ss_pred CHHHHHHHHHHHHHHHHHHcCCccEEEEEeeeecCCCCCCCCEEEEEEecC
Confidence 34455555555554 3464 8999999999999999999999999875
No 17
>4at7_B NF90, interleukin enhancer-binding factor 3; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_B* 4at9_B* 4atb_B*
Probab=97.00 E-value=0.025 Score=53.96 Aligned_cols=241 Identities=15% Similarity=0.163 Sum_probs=137.5
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHchhC--------------------------------------C----c
Q 038458 15 EEITAELIARIQPDPFSEERRNAVAAYVRRLIIQCF--------------------------------------P----C 52 (347)
Q Consensus 15 ~~~i~~f~~~l~Pt~~e~~~R~~vi~~l~~~i~~~~--------------------------------------p----~ 52 (347)
++-+..=...|-|+++|.+.-+.++..+++.++..- + .
T Consensus 13 dRhvmaKH~~IyP~~eel~avq~~Vs~~EraLK~VSD~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~L~ 92 (383)
T 4at7_B 13 DRHVMAKHSSVYPTQEELEAVQNMVSHTERALKAVSDWIDEQEKGNSELSEAENMDTPPDDESKEGAGEQKAEHMTRTLR 92 (383)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------------------------CCEE
T ss_pred chhhhhhhcccCCCHHHHHHHHHHHHHHHHHHHHHhHHHhhhhccCccccccccccCCccccccccccccccCCccceee
Confidence 555667778899999999999999999888876320 1 4
Q ss_pred eEEEecccccCCCCC-CCCcceeeecCCCcchhhHHHHHHHHHhhcccc-ccccceeee-----EEEe-eecceEEEEee
Q 038458 53 QVFTFGSVPLKTYLP-DRDIDLGAFSDDQTLKDTWAHLVRDMLENEEKN-EHAEFRVKE-----VQYI-QAEVKIIKCLV 124 (347)
Q Consensus 53 ~v~~fGS~~tgl~lp-~SDiDl~v~~~~~~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~-----v~~I-~ArVPIIK~~~ 124 (347)
-|.-.|+++-|+-+. +-++|+||++..... .++++.+.+.|...-+. ....+.+.. --.| ++.-|-
T Consensus 93 GVMRVG~laKGlLLkGd~~veLVvlck~kPT-~~ll~~va~~L~~qL~~~t~~~y~v~~~~~ea~i~i~~~~~p~----- 166 (383)
T 4at7_B 93 GVMRVGLVAKGLLLKGDLDLELVLLCKEKPT-TALLDKVADNLAIQLTTVTEDKYEILQSVDDAAIVIKNTKEPP----- 166 (383)
T ss_dssp EEEECHHHHHTCCCTTCCEEEEEEEESSCCB-HHHHHHHHHHHHHHHTTTCCCCCEEEEEGGGTEEEEECSSSSC-----
T ss_pred eeeEeceecccceECCCCceeEEEEeCCCCc-HHHHHHHHHHHHHHHhhccCCceEEeecCCcceEEEecCCCCC-----
Confidence 577799999999994 688999999986433 33445555444321110 000121211 0011 222232
Q ss_pred cCeeEEEeecCC---------------------Cccchh---hhHHHHH--HHhcc----ChhhHHHHHHHHHHHHHhhc
Q 038458 125 DNFVVDIAFNQL---------------------GGLCTL---CFLDEVD--HLINE----NHLFKRSIILIKAWCYYESR 174 (347)
Q Consensus 125 ~~i~vDIs~n~~---------------------~g~~~s---~~l~~i~--~~~~~----~p~~r~L~~~lK~Wa~~~~r 174 (347)
+.|=|++..+ .-+... .-+..++ +|++. -+....++.++|..+ +|
T Consensus 167 --~~v~I~lTSp~~re~~~~~~~~~~~~~~dp~d~Ld~~~cl~aLAalRhAkWFqara~~l~s~~ilIRilkdlc---~R 241 (383)
T 4at7_B 167 --LSLTIHLTSPVVREEMEKVLAGETLSVNDPPDVLDRQKCLAALASLRHAKWFQARANGLKSCVIVIRVLRDLC---TR 241 (383)
T ss_dssp --CEEEEEEECHHHHHHHHHHHTTCCCCCCCCTTBCCHHHHHHHHHHHHHHHHCCCCCTTSTTHHHHHHHHHHHH---HH
T ss_pred --eEEEEEECCcccccchhhcccccccccCChhhcCCHHHHHHHHHHhhhhHHHHHhcccCCCceEEeehhhHHH---Hh
Confidence 3333433221 001100 0011111 22322 234567788888642 33
Q ss_pred ccCCCCCCCcHHHHHHHHHHHHHhCcCCCCChHHHHHHHHhccccCCCCCeeEEeeCCcccCCCCCccCCCCCCCCCccc
Q 038458 175 ILGGHHGLISSYALVTLVLYIFHVFNGSFAGPLEVLYRFLEFFSKFDWDNFCLSLWGPVPISLLPDVTAEPPRKDGGVLL 254 (347)
Q Consensus 175 ~ln~~~GglsSYal~lMvi~fLQ~~~~~~~~p~~lL~~Ff~~Y~~Fd~~~~~isi~~~~~~~~~~~~~~~~p~~~~g~~~ 254 (347)
.. ..+.|+.|++=+++.+-+-. .....+|++.|.++|+.-+.. .+
T Consensus 242 ~~--~~~pL~~waLELL~~~ai~s-~~~~l~~~~afRRVLEllasG-------------------------------~l- 286 (383)
T 4at7_B 242 VP--TWGPLRGWPLELLCEKSIGT-ANRPMGAGEALRRVLECLASG-------------------------------IV- 286 (383)
T ss_dssp CG--GGGGGTTHHHHHHHHHHHHT-SSSCCCHHHHHHHHHHHHHTT-------------------------------TT-
T ss_pred cC--CcCCCcHhHHHHHHHHHhhC-CCCCCCHHHHHHHHHHHHhcC-------------------------------cc-
Confidence 22 23568888888888888864 334456788888888754411 00
Q ss_pred ccHhHHHHHHhhcCCCCCCCCCCCCCccCcceEEeCCCC--CCCCcccccCcchHHHHHHHHHHHHHHHH-----HHhcC
Q 038458 255 LSKSFLDSCRYAYADFPGGQENQGQPFVSKHFNVIDPLR--VNNNLGRSVSKGNFFRIRTAFTFRAKGLA-----RLLDC 327 (347)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~IeDPf~--~~~N~~rsv~~~~~~~I~~~F~~a~~~l~-----~~~~~ 327 (347)
+ +..-.|.||.+ +.+|++ +++...-+.|...-+.+.+.+. ++|++
T Consensus 287 L---------------------------p~~pgI~DPcEk~pt~~~~-~lt~qq~e~it~sAQ~~LR~~afgq~~kVLGm 338 (383)
T 4at7_B 287 M---------------------------PDGSGIYDPCEKEATDAIG-HLDRQQREDITQSAQHALRLAAFGQLHKVLGM 338 (383)
T ss_dssp S---------------------------TTSCCCBCTTCSSCCBTTT-TCCHHHHHHHHHHHHHHHHHHHTTCHHHHTTC
T ss_pred c---------------------------CCCCCccCCCCCCCccccc-cCCHHHHHHHHHHHHHHHHHHhhCCcceeccC
Confidence 0 01124889999 777777 5565556777777776666543 67765
Q ss_pred CC
Q 038458 328 PN 329 (347)
Q Consensus 328 ~~ 329 (347)
+.
T Consensus 339 e~ 340 (383)
T 4at7_B 339 DP 340 (383)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 18
>4ebj_A Aminoglycoside nucleotidyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 1.60A {Pseudomonas aeruginosa} PDB: 4ebk_A*
Probab=96.75 E-value=0.0013 Score=59.33 Aligned_cols=41 Identities=15% Similarity=0.088 Sum_probs=33.5
Q ss_pred HHHHHHHHchhCC--ceEEEecccccCCCCCCCCcceeeecCC
Q 038458 39 AAYVRRLIIQCFP--CQVFTFGSVPLKTYLPDRDIDLGAFSDD 79 (347)
Q Consensus 39 i~~l~~~i~~~~p--~~v~~fGS~~tgl~lp~SDiDl~v~~~~ 79 (347)
++.+.+.+++.++ ..|..|||++.|-+.++||||++|+...
T Consensus 26 L~~ive~L~~~~~~i~~I~LFGS~ARG~~~~~SDIDilVv~~~ 68 (272)
T 4ebj_A 26 IARWVDRLREEYADAVAILLKGSYARGDAATWSDIDFDVLVST 68 (272)
T ss_dssp HHHHHHHHHHHCTTEEEEEEEHHHHHTCCCTTCCEEEEEEESS
T ss_pred HHHHHHHHHHhcCCceEEEEEeceeCCCCCCCCceEEEEEecC
Confidence 4444444555576 7899999999999999999999999876
No 19
>1kny_A Kntase, kanamycin nucleotidyltransferase; antibiotic resistance, plasmid; HET: APC KAN; 2.50A {Staphylococcus aureus} SCOP: a.24.16.1 d.218.1.1 PDB: 1kan_A
Probab=96.44 E-value=0.0017 Score=59.08 Aligned_cols=43 Identities=16% Similarity=0.237 Sum_probs=35.3
Q ss_pred HHHHHHHHHHchhCC---ceEEEecccccCCCCCCCCcceeeecCC
Q 038458 37 AVAAYVRRLIIQCFP---CQVFTFGSVPLKTYLPDRDIDLGAFSDD 79 (347)
Q Consensus 37 ~vi~~l~~~i~~~~p---~~v~~fGS~~tgl~lp~SDiDl~v~~~~ 79 (347)
.+++.+...+.+.++ ..+..|||.+.|-+.|+||||+.|....
T Consensus 14 ~~~~~~~~~l~~~~~~~~~~~~lfGS~arg~~~~~SDiD~~v~~~~ 59 (253)
T 1kny_A 14 KIVHEIKERILDKYGDDVKAIGVYGSLGRQTDGPYSDIEMMCVMST 59 (253)
T ss_dssp HHHHHHHHHHHHHHGGGEEEEEEEHHHHHTCCCTTCCEEEEEEESS
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEEccccCCCCCCCCCeeEEEEecC
Confidence 455555666666666 7899999999999999999999998875
No 20
>3jz0_A Lincosamide nucleotidyltransferase; alpha-beta structure, transferase-antibiotic CO; HET: APC CLY; 2.00A {Enterococcus faecium} PDB: 3jyy_A*
Probab=92.53 E-value=0.1 Score=48.22 Aligned_cols=53 Identities=17% Similarity=0.118 Sum_probs=39.4
Q ss_pred CChHHHHHHHHHHHHHHHHHchhCC-ceEEEecccccCCCCCCCCcceeeecCC
Q 038458 27 PDPFSEERRNAVAAYVRRLIIQCFP-CQVFTFGSVPLKTYLPDRDIDLGAFSDD 79 (347)
Q Consensus 27 Pt~~e~~~R~~vi~~l~~~i~~~~p-~~v~~fGS~~tgl~lp~SDiDl~v~~~~ 79 (347)
|.-......++.++.|.+.+++.-. ..|.++||.++|-.-..||+|++++..+
T Consensus 16 ~~~~~m~~~~e~l~~I~~~~~~d~~i~av~l~GS~~~~~~D~~SD~Di~~vV~~ 69 (287)
T 3jz0_A 16 PRGSHMLKQKELIANVKNLTESDERITACMMYGSFTKGEGDQYSDIEFYIFLKH 69 (287)
T ss_dssp ------CHHHHHHHHHHHHHHHCTTEEEEEECSGGGTTCCCTTCCEEEEEEECG
T ss_pred CCCCCccCHHHHHHHHHHHHhcCCCEEEEEEECCccCCCCCCccceeEEEEEcC
Confidence 4333334445778888888876555 8899999999999999999999999875
No 21
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=87.06 E-value=6.5 Score=36.77 Aligned_cols=93 Identities=12% Similarity=0.023 Sum_probs=56.9
Q ss_pred HHHHHHHHHHchhCC-ceEEEecccccCCCCCCCCcceeeecCCCcchh----hHHHHHHHHHhhccccccccceeeeEE
Q 038458 37 AVAAYVRRLIIQCFP-CQVFTFGSVPLKTYLPDRDIDLGAFSDDQTLKD----TWAHLVRDMLENEEKNEHAEFRVKEVQ 111 (347)
Q Consensus 37 ~vi~~l~~~i~~~~p-~~v~~fGS~~tgl~lp~SDiDl~v~~~~~~~~~----~~~~~l~~~L~~~~~~~~~~~~~~~v~ 111 (347)
.+.+.|...++..-| +++.+-||+.=|-.+ .+|||+++..++..... .+...+.+.|...+ .+..+.
T Consensus 157 ~ia~~i~~~l~~~~~~~~v~i~GS~RRgket-~gDiDilit~~~~~~~~~~~~~l~~~v~~~l~~~~-------~v~~~l 228 (335)
T 2fmp_A 157 QMQDIVLNEVKKVDSEYIATVCGSFRRGAES-SGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVH-------FITDTL 228 (335)
T ss_dssp HHHHHHHHHHHHHCTTCEEEECHHHHTTCSE-ESSEEEEEECTTBCSSCBCSSCHHHHHHHHHHHTT-------SEEEEE
T ss_pred HHHHHHHHHHHhcCCCcEEEeccccccccCc-cCCeEEEEECCCccccccchhhhHHHHHHHHHhCC-------cceeee
Confidence 344555556666667 999999999999887 67999999988532211 34555555666543 233322
Q ss_pred Ee-eecceEE-EEee-------cCeeEEEeecCCC
Q 038458 112 YI-QAEVKII-KCLV-------DNFVVDIAFNQLG 137 (347)
Q Consensus 112 ~I-~ArVPII-K~~~-------~~i~vDIs~n~~~ 137 (347)
.. ..|.=++ ++.. .++.|||-+-...
T Consensus 229 ~~g~~k~~~v~~l~~~~~~~~~~~~rVDl~~vp~~ 263 (335)
T 2fmp_A 229 SKGETKFMGVCQLPSKNDEKEYPHRRIDIRLIPKD 263 (335)
T ss_dssp EECSSEEEEEECCCCCTTCCCCCCEEEEEEECCGG
T ss_pred ecCCceEEEEEEeCCcccccCCCceEEEEEEECHH
Confidence 22 3333222 2222 1799999886543
No 22
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=84.37 E-value=9.6 Score=35.64 Aligned_cols=60 Identities=15% Similarity=0.032 Sum_probs=43.2
Q ss_pred HHHHHHHHHHchhCC-ceEEEecccccCCCCCCCCcceeeecCCCcchhhHHHHHHHHHhhc
Q 038458 37 AVAAYVRRLIIQCFP-CQVFTFGSVPLKTYLPDRDIDLGAFSDDQTLKDTWAHLVRDMLENE 97 (347)
Q Consensus 37 ~vi~~l~~~i~~~~p-~~v~~fGS~~tgl~lp~SDiDl~v~~~~~~~~~~~~~~l~~~L~~~ 97 (347)
.+.+.|...++..-| +.+.+-||+.=|-.+ .+|||+++..++......++..+.+.|...
T Consensus 154 ~ia~~i~~~l~~~~~~~~v~i~GS~RRgket-~gDiDilit~~~~~~~~~ll~~v~~~l~~~ 214 (335)
T 2bcq_A 154 EIEQTVQKAAQAFNSGLLCVACGSYRRGKAT-CGDVDVLITHPDGRSHRGIFSRLLDSLRQE 214 (335)
T ss_dssp HHHHHHHHHHHTTCTTCEEEECHHHHTTCSE-ESSEEEEEECTTSSTTTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCcEEEEccccccCCCC-CCCeEEEEecCCchhhhhHHHHHHHHHHhC
Confidence 445566666666667 999999999999887 679999999887443334455555566554
No 23
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=72.87 E-value=3.6 Score=38.97 Aligned_cols=60 Identities=15% Similarity=0.157 Sum_probs=43.9
Q ss_pred HHHHHHHHHHchhCC-ceEEEecccccCCCCCCCCcceeeecCCCcchhhHHHHHHHHHhhc
Q 038458 37 AVAAYVRRLIIQCFP-CQVFTFGSVPLKTYLPDRDIDLGAFSDDQTLKDTWAHLVRDMLENE 97 (347)
Q Consensus 37 ~vi~~l~~~i~~~~p-~~v~~fGS~~tgl~lp~SDiDl~v~~~~~~~~~~~~~~l~~~L~~~ 97 (347)
.+.+.|...++..-| +++.+-||+.=|-.+ .+|||++|..++......++..+...|...
T Consensus 161 ~i~~~i~~~l~~~~~~~~v~i~GSyRRgket-~gDvDilit~~~~~~~~~ll~~v~~~L~~~ 221 (360)
T 2ihm_A 161 ALQQLIEAAVRQTLPGATVTLTGGFRRGKLQ-GHDVDFLITHPEEGQEVGLLPKVMSCLQSQ 221 (360)
T ss_dssp HHHHHHHHHHHTTCTTCEEEECHHHHTTCSE-ESEEEEEEECSSTTTTTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCcEEEEccccccCCCc-cCCeEEEEecCChhhhhhHHHHHHHHHHhC
Confidence 445556666666677 999999999999887 679999999987543444555666666554
No 24
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=63.59 E-value=11 Score=35.91 Aligned_cols=60 Identities=22% Similarity=0.303 Sum_probs=41.3
Q ss_pred HHHHHHHHHHchhCC-ceEEEecccccCCCCCCCCcceeeecCCCcchhh--HHHHHHHHHhhc
Q 038458 37 AVAAYVRRLIIQCFP-CQVFTFGSVPLKTYLPDRDIDLGAFSDDQTLKDT--WAHLVRDMLENE 97 (347)
Q Consensus 37 ~vi~~l~~~i~~~~p-~~v~~fGS~~tgl~lp~SDiDl~v~~~~~~~~~~--~~~~l~~~L~~~ 97 (347)
.+.+.|...++..-| +.+.+-||+.=|-.+ .+|||++|..++...... ++..+.+.|...
T Consensus 181 ~ia~~i~~~l~~~~~~~~v~i~GSyRRgket-~gDvDilit~~~~~~~~~~~ll~~vv~~L~~~ 243 (381)
T 1jms_A 181 AVSMLVKEAVVTFLPDALVTMTGGFRRGKMT-GHDVDFLITSPEATEDEEQQLLHKVTDFWKQQ 243 (381)
T ss_dssp HHHHHHHHHHHHHCTTCEEEECHHHHTTCSC-BSSEEEEEECTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCcEEEEccccccCCCC-cCCeEEEEeCCCccccchhhHHHHHHHHHHhC
Confidence 344555556666667 999999999999887 569999999987432222 444555555543
No 25
>2pbe_A AAD6, aminoglycoside 6-adenylyltransferase; NYSGXRC, aminoglycoside 6-adenyltransferase, PSI-2, structural genomics; 2.65A {Bacillus subtilis} SCOP: a.160.1.5 d.218.1.13
Probab=60.35 E-value=7.2 Score=35.77 Aligned_cols=43 Identities=16% Similarity=0.025 Sum_probs=25.5
Q ss_pred HHHHHHHHHHchhCC-ceEEEecccccCC--CCCCCCcceeeecCC
Q 038458 37 AVAAYVRRLIIQCFP-CQVFTFGSVPLKT--YLPDRDIDLGAFSDD 79 (347)
Q Consensus 37 ~vi~~l~~~i~~~~p-~~v~~fGS~~tgl--~lp~SDiDl~v~~~~ 79 (347)
.+++.|....+.--. .-|.+-||.+++- .-.-||+|++++..+
T Consensus 8 em~~~i~~~a~~d~rI~Av~l~GSr~n~~~~~D~fSDyDi~~vv~d 53 (294)
T 2pbe_A 8 EMMDIFLDFALNDERIRLVTLEGSRTNRNIPPDNFQDYDISYFVTD 53 (294)
T ss_dssp HHHHHHHHHHHHCTTEEEEEEC------------CCCEEEEEEESC
T ss_pred HHHHHHHHHHcCCcCEEEEEEecCCCCCCCCCCCcccceEEEEEcC
Confidence 466776666655444 7789999999955 788899999999986
No 26
>2fcl_A Hypothetical protein TM1012; putative nucleotidyltransferase, structural genomics, joint for structural genomics, JCSG; HET: MLY; 1.20A {Thermotoga maritima} SCOP: d.218.1.11 PDB: 2ewr_A
Probab=54.72 E-value=57 Score=27.06 Aligned_cols=56 Identities=14% Similarity=0.112 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHchhC--CceEEEecccc---cCCCCCCCCcceeeecCCCcchhhHHHHHHHHHhhc
Q 038458 35 RNAVAAYVRRLIIQCF--PCQVFTFGSVP---LKTYLPDRDIDLGAFSDDQTLKDTWAHLVRDMLENE 97 (347)
Q Consensus 35 R~~vi~~l~~~i~~~~--p~~v~~fGS~~---tgl~lp~SDiDl~v~~~~~~~~~~~~~~l~~~L~~~ 97 (347)
|+.+.+.++.+...+- ++.-.+-||++ -|.-.+.-|||+.+... -...+.++|+..
T Consensus 15 ~~~~~~~L~~i~~~L~~~~V~~~l~Gs~Al~~~G~~~~~~DIDi~i~~~-------da~~~~~~L~~~ 75 (169)
T 2fcl_A 15 RPEYLRVLRXIYDRLXNEXVNWVVTGSLSFALQGVPVEVHDIDIQTDEE-------GAYEIERIFSEF 75 (169)
T ss_dssp CHHHHHHHHHHHHHHTTSSCCEEEEHHHHHHHTTCCCCCCSEEEEECHH-------HHHHHHHHTGGG
T ss_pred cHHHHHHHHHHHHHHHhcCCCEEEeHHHHHHHcCCCCCCCccEEEeccc-------CHHHHHHHHHHH
Confidence 4445555555554443 38888999986 48888999999999322 244566666654
No 27
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=51.42 E-value=1.2e+02 Score=30.11 Aligned_cols=83 Identities=17% Similarity=0.046 Sum_probs=50.3
Q ss_pred HHHHHHHHHchhCC-ceEEEecccccCCCCCCCCcceeeecCCCcchhhHHHHHHHHHhhccccccccceeeeEEEe-ee
Q 038458 38 VAAYVRRLIIQCFP-CQVFTFGSVPLKTYLPDRDIDLGAFSDDQTLKDTWAHLVRDMLENEEKNEHAEFRVKEVQYI-QA 115 (347)
Q Consensus 38 vi~~l~~~i~~~~p-~~v~~fGS~~tgl~lp~SDiDl~v~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~I-~A 115 (347)
+.+.|...++..-| .++.+-||+.=|-.+ .+|||+++..++. . .+.+.+...+ .+..+..- ..
T Consensus 166 ~~~~i~~~l~~~~~~~~~~~~Gs~RRgke~-~gDiD~li~~~~~---~----~v~~~l~~~~-------~~~~~~~~g~~ 230 (575)
T 3b0x_A 166 LARSLLEAIRALPGVERAELCGSARRYKDT-VGDLDFLVASREG---E----RAVEGFVRLP-------QVKEVYAKGKE 230 (575)
T ss_dssp HHHHHHHHHHTSTTCCEEEECHHHHTTCSE-ESSEEEEEECSSH---H----HHHHHHHTST-------TEEEEEEECSS
T ss_pred HHHHHHHHHHhCCCCcEEEEccccccCCCc-cCCeEEEEeCCCH---H----HHHHHHHhCc-------chhhHhhcCCC
Confidence 44555556655556 899999999999877 4599999999862 1 2334444432 23332111 22
Q ss_pred cceEEEEeecCeeEEEeecCCC
Q 038458 116 EVKIIKCLVDNFVVDIAFNQLG 137 (347)
Q Consensus 116 rVPIIK~~~~~i~vDIs~n~~~ 137 (347)
++-+ + ...|+.|||-+-...
T Consensus 231 k~~~-~-~~~~~rvDl~~~~~~ 250 (575)
T 3b0x_A 231 RATV-F-LKNGLQVDLRVVPPE 250 (575)
T ss_dssp EEEE-E-ETTSCEEEEEEECGG
T ss_pred ceEE-E-ccCCcEEEEEEECHH
Confidence 2222 1 127899999986543
No 28
>3er9_B Poly(A) polymerase catalytic subunit; polyadenylate polymerase, translocation, single tranded RNA polymerase, RNA protein complex, processivity, heterodimer; HET: 3AT; 2.06A {Vaccinia virus WR} SCOP: e.69.1.1 PDB: 3er8_C* 3erc_C* 3owg_A 2ga9_D* 2gaf_D
Probab=33.00 E-value=15 Score=35.04 Aligned_cols=85 Identities=14% Similarity=0.096 Sum_probs=45.8
Q ss_pred CCCchhhhHHHHHHHHHHHhCCChHHHHHHHH---HHHHHHHHHchhCC---ceEEEecccccCCCCC---CCCcceeee
Q 038458 6 LDPGRWLKAEEITAELIARIQPDPFSEERRNA---VAAYVRRLIIQCFP---CQVFTFGSVPLKTYLP---DRDIDLGAF 76 (347)
Q Consensus 6 ~~~~~~~~l~~~i~~f~~~l~Pt~~e~~~R~~---vi~~l~~~i~~~~p---~~v~~fGS~~tgl~lp---~SDiDl~v~ 76 (347)
.|.+..+++-.++..-|+-.+|++.+.-.|.. ++..+.+++++.+. -.+..|||+..-+--| -+|||+.=.
T Consensus 129 ~d~~s~~~la~~iL~synv~~~~~~~vmgRh~VSdLV~~V~klmeEyLrrhNk~CicYGSySlhlLNp~I~YgDIDilqT 208 (479)
T 3er9_B 129 YNVTSMEELARDMLNSMNVAVIDKAKVMGRHNVSSLVKNVNKLMEEYLRRHNKSCICYGSYSLYLINPNIRYGDIDILQT 208 (479)
T ss_dssp -CGGGGHHHHHHHHHHHCCCC-----------CCTTHHHHHHHHHHHHHHCTTTEEEESHHHHHTTCTTCCCCSCEEEES
T ss_pred echHHHHHHHHHHHHhcccccCCcccccccccccHHHHHHHHHHHHHHHhcCCCeEEeeceeeeecCCCcccCCcceeee
Confidence 45555566666666666667777645556643 35555555555433 7788999998877655 499998744
Q ss_pred cCCCcchhhHHHHHHHHHh
Q 038458 77 SDDQTLKDTWAHLVRDMLE 95 (347)
Q Consensus 77 ~~~~~~~~~~~~~l~~~L~ 95 (347)
.. .+++-.++-++.
T Consensus 209 Na-----r~fLInlafLI~ 222 (479)
T 3er9_B 209 NS-----RTFLIDLAFLIK 222 (479)
T ss_dssp SH-----HHHHHHHHHHHH
T ss_pred cc-----HHHHHHHHHHHh
Confidence 33 345444444443
No 29
>1v4a_A Glutamate-ammonia-ligase adenylyltransferase; main alpha helix, DNA polymerase beta motif; 2.00A {Escherichia coli} SCOP: a.24.16.4 d.218.1.9
Probab=25.33 E-value=28 Score=33.67 Aligned_cols=28 Identities=18% Similarity=0.053 Sum_probs=25.5
Q ss_pred ceEEEecccccCCCCCCCCcceeeecCC
Q 038458 52 CQVFTFGSVPLKTYLPDRDIDLGAFSDD 79 (347)
Q Consensus 52 ~~v~~fGS~~tgl~lp~SDiDl~v~~~~ 79 (347)
..|..+||+.-|=-.+.||||++++.++
T Consensus 155 ~aviamGk~Gr~EL~~~SDiDli~l~~~ 182 (440)
T 1v4a_A 155 LLILGMGKLGGGELNFSSDIDLIFAWPE 182 (440)
T ss_dssp CEEEECHHHHTTCCCSSCCEEEEEEECC
T ss_pred EEEEEeccccccCcCCCCCcceEEEeCC
Confidence 5788999999999999999999999874
Done!