BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038460
         (456 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3CTD|A Chain A, Crystal Structure Of A Putative Aaa Family Atpase From
           Prochlorococcus Marinus Subsp. Pastoris
 pdb|3CTD|B Chain B, Crystal Structure Of A Putative Aaa Family Atpase From
           Prochlorococcus Marinus Subsp. Pastoris
          Length = 213

 Score = 31.2 bits (69), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 27/48 (56%)

Query: 135 ESEELPCGFFKKFPISNSDRIEMENCNGVVVVSAIFDDHDKIRQPKGL 182
           E+ E P   F++  IS  + I + + N +VVV +  D  D++  P+GL
Sbjct: 63  EAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFPEGL 110


>pdb|1LKJ|A Chain A, Nmr Structure Of Apo Calmodulin From Yeast Saccharomyces
           Cerevisiae
          Length = 146

 Score = 29.6 bits (65), Expect = 4.1,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 14/89 (15%)

Query: 344 AIILRKHGLSNNLFSCL-LYNELEAFNPRDQLPFAYVRDLMSPKLKLNMFEEEVLEQI-- 400
           A ++R  GLS +      L NE++  +   Q+ F+    LMS +LK N  E+E+LE    
Sbjct: 33  ATVMRSLGLSPSEAEVNDLMNEIDV-DGNHQIEFSEFLALMSRQLKSNDSEQELLEAFKV 91

Query: 401 ----------AAEYRHNLKRVRSSIRDEE 419
                     AAE +H L  +   + D E
Sbjct: 92  FDKNGDGLISAAELKHVLTSIGEKLTDAE 120


>pdb|2LHH|A Chain A, Solution Structure Of Ca2+-Bound Ycam
          Length = 128

 Score = 29.6 bits (65), Expect = 4.1,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 14/89 (15%)

Query: 344 AIILRKHGLSNNLFSCL-LYNELEAFNPRDQLPFAYVRDLMSPKLKLNMFEEEVLEQI-- 400
           A ++R  GLS +      L NE++  +   Q+ F+    LMS +LK N  E+E+LE    
Sbjct: 33  ATVMRSLGLSPSEAEVNDLMNEIDV-DGNHQIEFSEFLALMSRQLKSNDSEQELLEAFKV 91

Query: 401 ----------AAEYRHNLKRVRSSIRDEE 419
                     AAE +H L  +   + D E
Sbjct: 92  FDKNGDGLISAAELKHVLTSIGEKLTDAE 120


>pdb|2LHI|A Chain A, Solution Structure Of Ca2+CNA1 PEPTIDE-Bound Ycam
          Length = 176

 Score = 28.1 bits (61), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 24/94 (25%)

Query: 344 AIILRKHGLS------NNLFSCLLYNELEAFNPRDQLPFAYVRDLMSPKLKLNMFEEEVL 397
           A ++R  GLS      N+L      NE++  +   Q+ F+    LMS +LK N  E+E+L
Sbjct: 34  ATVMRSLGLSPSEAEVNDLM-----NEID-VDGNHQIEFSEFLALMSRQLKSNDSEQELL 87

Query: 398 EQI------------AAEYRHNLKRVRSSIRDEE 419
           E              AAE +H L  +   + D E
Sbjct: 88  EAFKVFDKNGDGLISAAELKHVLTSIGEKLTDAE 121


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.136    0.427 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,086,579
Number of Sequences: 62578
Number of extensions: 594152
Number of successful extensions: 1231
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1230
Number of HSP's gapped (non-prelim): 4
length of query: 456
length of database: 14,973,337
effective HSP length: 102
effective length of query: 354
effective length of database: 8,590,381
effective search space: 3040994874
effective search space used: 3040994874
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)