BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038460
(456 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q39238|TSL_ARATH Serine/threonine-protein kinase TOUSLED OS=Arabidopsis thaliana
GN=TOUSLED PE=1 SV=1
Length = 688
Score = 38.9 bits (89), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 56/106 (52%), Gaps = 15/106 (14%)
Query: 363 NELEAFNPRDQLPFAYVR---------DLMSPKLKLNMFEEEVLE--QIAAEYRH---NL 408
++L+A + +D P +R DL S + K+ M EEE+ + Q ++EY H NL
Sbjct: 174 SQLDASDQKDFRPDGQLRNGECSLQDEDLKSLRAKIAMLEEELRKSRQDSSEYHHLVRNL 233
Query: 409 KRVRSSIRDEESYTTQRTKRARSDLIVNSSCCSRCQNYLSEVWDEA 454
+ ++D+E Q+T + SDL+++ S R Q ++V +E+
Sbjct: 234 ENEVKDLKDQEQQGKQKTTKVISDLLISVSKTER-QEARTKVRNES 278
>sp|P34731|FAS1_CANAX Fatty acid synthase subunit beta OS=Candida albicans GN=FAS1 PE=3
SV=1
Length = 2037
Score = 34.7 bits (78), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 107 LRYMMEDGDTFGGTFSTNRRLSYFNHSNESEELPCGFFKKFPISNSDRIEMENCNGVVVV 166
LR + E + GT S L FN NE E+ FF+KFP + I E+C+ +++
Sbjct: 938 LRRVEERFTSSAGTVSL---LQNFNQLNEPEQFTADFFEKFPQAGKQLISEEDCDYFLML 994
Query: 167 SA 168
+A
Sbjct: 995 AA 996
>sp|Q81DW0|RACA_BACCR Chromosome-anchoring protein RacA OS=Bacillus cereus (strain ATCC
14579 / DSM 31) GN=racA PE=3 SV=1
Length = 180
Score = 32.7 bits (73), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 245 YLVHRLFPNSKYSIWINAQLQLMVDPLLLIHALVVAEDVDMAIPKHPFFIHTMEEAMATA 304
++ +L + K + I QL L ++ H + EDVD + H F I + + +T
Sbjct: 7 FIAKKLGVSPKAVVRIAQQLNLTIEKNKYGHFIFTQEDVDQMLEHHRFQIEQSQNSQSTQ 66
Query: 305 RWKKWWDVESLQRQMETYCKN 325
+ +VE L+ Q+ T +N
Sbjct: 67 KA-SSNEVEELKTQVNTIVQN 86
>sp|B7H546|RACA_BACC4 Chromosome-anchoring protein RacA OS=Bacillus cereus (strain B4264)
GN=racA PE=3 SV=1
Length = 180
Score = 32.7 bits (73), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 245 YLVHRLFPNSKYSIWINAQLQLMVDPLLLIHALVVAEDVDMAIPKHPFFIHTMEEAMATA 304
++ +L + K + I QL L ++ H + EDVD + H F I + + +T
Sbjct: 7 FIAKKLGVSPKAVVRIAQQLNLTIEKNKYGHFIFTQEDVDQMLEHHRFQIEQSQNSQSTQ 66
Query: 305 RWKKWWDVESLQRQMETYCKN 325
+ +VE L+ Q+ T +N
Sbjct: 67 KA-SSNEVEELKTQVNTIVQN 86
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 175,333,270
Number of Sequences: 539616
Number of extensions: 7527969
Number of successful extensions: 15182
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 15181
Number of HSP's gapped (non-prelim): 4
length of query: 456
length of database: 191,569,459
effective HSP length: 121
effective length of query: 335
effective length of database: 126,275,923
effective search space: 42302434205
effective search space used: 42302434205
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 63 (28.9 bits)