Query 038460
Match_columns 456
No_of_seqs 112 out of 130
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 11:17:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038460.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038460hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04765 DUF616: Protein of un 100.0 3E-113 6E-118 851.0 27.5 294 106-406 1-305 (305)
2 cd04194 GT8_A4GalT_like A4GalT 79.4 2.2 4.7E-05 40.9 3.8 94 189-290 30-130 (248)
3 PF03407 Nucleotid_trans: Nucl 69.0 12 0.00026 35.0 5.8 111 244-396 57-171 (212)
4 cd00505 Glyco_transf_8 Members 61.8 18 0.00038 34.9 5.7 159 189-383 30-200 (246)
5 PF01501 Glyco_transf_8: Glyco 61.8 5.9 0.00013 36.6 2.3 50 239-290 84-133 (250)
6 cd06429 GT8_like_1 GT8_like_1 44.7 33 0.00072 34.3 4.6 96 189-290 29-148 (257)
7 PF15240 Pro-rich: Proline-ric 32.0 26 0.00057 33.9 1.6 19 21-39 1-19 (179)
8 PF03452 Anp1: Anp1; InterPro 30.8 47 0.001 34.0 3.2 47 244-293 133-179 (269)
9 cd06431 GT8_LARGE_C LARGE cata 24.9 67 0.0015 32.4 3.1 98 188-290 29-135 (280)
10 PF03314 DUF273: Protein of un 23.0 1.1E+02 0.0023 30.8 4.0 63 247-316 35-97 (222)
11 KOG0400 40S ribosomal protein 20.7 96 0.0021 29.2 2.9 51 282-351 8-59 (151)
No 1
>PF04765 DUF616: Protein of unknown function (DUF616); InterPro: IPR006852 The entry represents a protein of unknown function. The function of is unknown although a number of the members are thought to be glycosyltransferases.
Probab=100.00 E-value=3e-113 Score=851.03 Aligned_cols=294 Identities=51% Similarity=0.852 Sum_probs=283.9
Q ss_pred ceeEeecC-------CCCccCccchhhhhhhccccCCceeecccccc--CCCCChhhHHHhhcCCcEEEEEEeeCCCCCC
Q 038460 106 NLRYMMED-------GDTFGGTFSTNRRLSYFNHSNESEELPCGFFK--KFPISNSDRIEMENCNGVVVVSAIFDDHDKI 176 (456)
Q Consensus 106 ~l~y~~~~-------~~~FgG~~s~~~R~~sf~~~~~s~~vhCGF~~--~F~i~~~d~~~m~~c~kvVVyTAIFG~YD~L 176 (456)
||+|+.++ +++|||||||+||++||++ +++|+|||||++ ||||+|.|+.+|++| +|||||||||+||+|
T Consensus 1 nl~y~~~~~~~~~~~~~~f~g~~s~~~R~~sf~~-~~~~~v~Cgf~~~~gf~i~~~d~~~m~~c-~vvV~saIFG~yD~l 78 (305)
T PF04765_consen 1 NLTYIEEENKPESGRGPSFGGNQSLEERESSFDI-QEDMTVHCGFVKNTGFDISESDRRYMEKC-RVVVYSAIFGNYDKL 78 (305)
T ss_pred CCcccccccccccCCCCCcCCcCCHHHHHHhcCC-CCCceeccccccCCCCCCCHHHHHHHhcC-CEEEEEEecCCCccc
Confidence 67888765 5999999999999999995 788999999999 899999999999999 599999999999999
Q ss_pred CCCCCCCCCCCCceEEEEEeehhhhhhhhhcccccccccCCcccceEEEEecccCC-CCCCccccccceeeecccCCCCC
Q 038460 177 RQPKGLGSKTLDNVCFFMFIDDVTLKGFRYHQLIPRKVLDYKIGAWRIVKVSRKNL-YSNPAKNVVIPKYLVHRLFPNSK 255 (456)
Q Consensus 177 ~~P~~i~~~s~~~VCF~mFtD~~tl~~l~~~~~ip~~~~~~~~g~WrIV~V~~~nl-y~D~rrngKipKlLpHrlFPny~ 255 (456)
+||++|++.++++|||+||||++|+++|+++|.++ ++++++|+||||+|+ ++ |+|+|||||+||+|||||||||+
T Consensus 79 ~qP~~i~~~s~~~vcf~mF~D~~t~~~l~~~~~~~--~~~~~ig~WrIv~v~--~lp~~d~rr~~r~~K~lpHrlfp~y~ 154 (305)
T PF04765_consen 79 RQPKNISEYSKKNVCFFMFVDEETLKSLESEGHIP--DENKKIGIWRIVVVK--NLPYDDPRRNGRIPKLLPHRLFPNYD 154 (305)
T ss_pred cCchhhCHHHhcCccEEEEEehhhHHHHHhcCCcc--ccccccCceEEEEec--CCCCcchhhcCcccceeccccCCCCc
Confidence 99999999999999999999999999999999886 578899999999997 88 99999999999999999999999
Q ss_pred EEEEEeCceeEecCHHHHHHHHHhcCCCeEEecCCCCCCChHHHHHHHHHhhccCChHHHHHHHHHHHHCCCCCCCCCC-
Q 038460 256 YSIWINAQLQLMVDPLLLIHALVVAEDVDMAIPKHPFFIHTMEEAMATARWKKWWDVESLQRQMETYCKNGLQPWSSNK- 334 (456)
Q Consensus 256 ySIWIDgkiqL~~DP~~lie~~L~r~~~~~AiskHp~R~ciYEEA~a~~~~~Ky~d~~~I~~Qm~~Yr~eGlp~~s~~K- 334 (456)
|||||||||+|++||++|||++||+++++|||++||.|+||||||+||++++|| +++.|++||++|++||||+|++.|
T Consensus 155 ySIWID~ki~L~~Dp~~lie~~l~~~~~~~Ai~~H~~R~cvyeEa~a~~~~~k~-~~~~I~~Qm~~Y~~eGlp~~s~~k~ 233 (305)
T PF04765_consen 155 YSIWIDGKIQLIVDPLLLIERFLWRKNADIAISKHPERNCVYEEAEACKRLGKY-DPERIDEQMEFYKQEGLPPWSPAKL 233 (305)
T ss_pred eEEEEeeeEEEecCHHHHHHHHHhcCCCcEEEeCCCCcccHHHHHHHHHHhcCC-ChHHHHHHHHHHHHcCCCccccccc
Confidence 999999999999999999999999999999999999999999999999999997 579999999999999999998888
Q ss_pred CCCCCCCcceEEEccCCCcchhhHHHHHHHHhhCCCCCCcchHHHHhHhCCCccccccchHHHHHHHHHhcc
Q 038460 335 PYPTDVPNTAIILRKHGLSNNLFSCLLYNELEAFNPRDQLPFAYVRDLMSPKLKLNMFEEEVLEQIAAEYRH 406 (456)
Q Consensus 335 p~~sglpE~~vIiR~H~p~snlfmclWfnEv~rft~RDQLSF~YVlwk~~~~~~lnMF~~~~~~~~~~~~~H 406 (456)
|+++|||||+||||+|+|++|+|||+|||||++||+||||||+||+||++++++||||+||+|++++++|+|
T Consensus 234 ~l~s~v~E~~iIiR~H~~~~nlf~clWfnEv~rfs~RDQLSF~Yv~wk~~~~~~~~mf~~~~~~~~~~~~~h 305 (305)
T PF04765_consen 234 PLPSDVPEGNIIIRKHNPMSNLFMCLWFNEVERFSPRDQLSFPYVLWKLGPKFKLNMFKDCERRQLVVLYRH 305 (305)
T ss_pred ccccCCccceEEEecCCchhHHHHHHHHHHHhcCCCcccchHHHHHHHhCCcccchhhhHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999
No 2
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune sys
Probab=79.37 E-value=2.2 Score=40.88 Aligned_cols=94 Identities=14% Similarity=0.194 Sum_probs=57.9
Q ss_pred ceEEEEEeehhhhhhhhhcccccccccCCcccceEEEEecccCC-CCCCc-cccc-----cceeeecccCCCCCEEEEEe
Q 038460 189 NVCFFMFIDDVTLKGFRYHQLIPRKVLDYKIGAWRIVKVSRKNL-YSNPA-KNVV-----IPKYLVHRLFPNSKYSIWIN 261 (456)
Q Consensus 189 ~VCF~mFtD~~tl~~l~~~~~ip~~~~~~~~g~WrIV~V~~~nl-y~D~r-rngK-----ipKlLpHrlFPny~ySIWID 261 (456)
.++|++++|+.+...++.=..+- .. ....-+++.++ .. +.+.. ...+ +.|++...+||+++.-||+|
T Consensus 30 ~~~~~il~~~is~~~~~~L~~~~---~~-~~~~i~~~~i~--~~~~~~~~~~~~~~~~~~y~rl~l~~ll~~~~rvlylD 103 (248)
T cd04194 30 DYDFYILNDDISEENKKKLKELL---KK-YNSSIEFIKID--NDDFKFFPATTDHISYATYYRLLIPDLLPDYDKVLYLD 103 (248)
T ss_pred ceEEEEEeCCCCHHHHHHHHHHH---Hh-cCCeEEEEEcC--HHHHhcCCcccccccHHHHHHHHHHHHhcccCEEEEEe
Confidence 58899899864443322211110 00 01233555554 22 22211 2222 33788899999999999999
Q ss_pred CceeEecCHHHHHHHHHhcCCCeEEecCC
Q 038460 262 AQLQLMVDPLLLIHALVVAEDVDMAIPKH 290 (456)
Q Consensus 262 gkiqL~~DP~~lie~~L~r~~~~~AiskH 290 (456)
+-+.+.+|+..|.+.-+ ++..+|+..|
T Consensus 104 ~D~lv~~di~~L~~~~~--~~~~~aa~~d 130 (248)
T cd04194 104 ADIIVLGDLSELFDIDL--GDNLLAAVRD 130 (248)
T ss_pred CCEEecCCHHHHhcCCc--CCCEEEEEec
Confidence 99999999888887433 5667887766
No 3
>PF03407 Nucleotid_trans: Nucleotide-diphospho-sugar transferase; InterPro: IPR005069 Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases [].
Probab=69.00 E-value=12 Score=34.99 Aligned_cols=111 Identities=14% Similarity=0.115 Sum_probs=70.7
Q ss_pred eeeecccCCCCCEEEEEeCceeEecCHHHHHHHHHhcCCCeEEecCCCCCCChHHHHHHHHHhhccCChHHHHHHHHHHH
Q 038460 244 KYLVHRLFPNSKYSIWINAQLQLMVDPLLLIHALVVAEDVDMAIPKHPFFIHTMEEAMATARWKKWWDVESLQRQMETYC 323 (456)
Q Consensus 244 KlLpHrlFPny~ySIWIDgkiqL~~DP~~lie~~L~r~~~~~AiskHp~R~ciYEEA~a~~~~~Ky~d~~~I~~Qm~~Yr 323 (456)
+++...|=-++. -+++|+-+.+..||..+++ ..+.++.++.-....
T Consensus 57 ~~~~~~L~~G~~-vl~~D~Dvv~~~dp~~~~~----~~~~Di~~~~d~~~~----------------------------- 102 (212)
T PF03407_consen 57 KVLLDLLELGYD-VLFSDADVVWLRDPLPYFE----NPDADILFSSDGWDG----------------------------- 102 (212)
T ss_pred HHHHHHHHcCCc-eEEecCCEEEecCcHHhhc----cCCCceEEecCCCcc-----------------------------
Confidence 444333333444 5689999999999999882 156677775531110
Q ss_pred HCCCCCCCCCCCCCCCCCcceEEEccCCCcchhhHHHHHHHHhhCCC-CCCcchHHHHhHhC---CCccccccchHH
Q 038460 324 KNGLQPWSSNKPYPTDVPNTAIILRKHGLSNNLFSCLLYNELEAFNP-RDQLPFAYVRDLMS---PKLKLNMFEEEV 396 (456)
Q Consensus 324 ~eGlp~~s~~Kp~~sglpE~~vIiR~H~p~snlfmclWfnEv~rft~-RDQLSF~YVlwk~~---~~~~lnMF~~~~ 396 (456)
.+... ..+.+-++++.=+.|+.+..|++.|-....+.+. .||-.|..++.... ..+++...+...
T Consensus 103 ---~~~~~-----~~~~~n~G~~~~r~t~~~~~~~~~w~~~~~~~~~~~DQ~~~n~~l~~~~~~~~~~~~~~L~~~~ 171 (212)
T PF03407_consen 103 ---TNSDR-----NGNLVNTGFYYFRPTPRTIAFLEDWLERMAESPGCWDQQAFNELLREQAARYGGLRVRFLPPSL 171 (212)
T ss_pred ---cchhh-----cCCccccceEEEecCHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHhcccCCcCcEEEEeCHHH
Confidence 00000 0122245566655688888899999999999954 79999999998865 344554444433
No 4
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.
Probab=61.78 E-value=18 Score=34.93 Aligned_cols=159 Identities=15% Similarity=0.135 Sum_probs=90.1
Q ss_pred ceEEEEEeehhhhhhhhhcccccccccCCcccceEEEEecccC-C-CC---CCccccccceeeecccCCCCCEEEEEeCc
Q 038460 189 NVCFFMFIDDVTLKGFRYHQLIPRKVLDYKIGAWRIVKVSRKN-L-YS---NPAKNVVIPKYLVHRLFPNSKYSIWINAQ 263 (456)
Q Consensus 189 ~VCF~mFtD~~tl~~l~~~~~ip~~~~~~~~g~WrIV~V~~~n-l-y~---D~rrngKipKlLpHrlFPny~ySIWIDgk 263 (456)
.+.|+.++|+.+....+.-..+- .. .....+++.++... . +. ......-+.|++..++||+++--||+|+-
T Consensus 30 ~~~~~il~~~is~~~~~~L~~~~---~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~y~RL~i~~llp~~~kvlYLD~D 105 (246)
T cd00505 30 PLRFHVLTNPLSDTFKAALDNLR---KL-YNFNYELIPVDILDSVDSEHLKRPIKIVTLTKLHLPNLVPDYDKILYVDAD 105 (246)
T ss_pred CeEEEEEEccccHHHHHHHHHHH---hc-cCceEEEEeccccCcchhhhhcCccccceeHHHHHHHHhhccCeEEEEcCC
Confidence 57899998875543222211110 00 11234555554111 0 11 22344456799999999999999999999
Q ss_pred eeEecCHHHHHHHHHhcCCCeEEecCCCCCCChHHHHHHHHHhhccCChHHHHHHHHHH-HHCCCCCCCCCCCCCCCCCc
Q 038460 264 LQLMVDPLLLIHALVVAEDVDMAIPKHPFFIHTMEEAMATARWKKWWDVESLQRQMETY-CKNGLQPWSSNKPYPTDVPN 342 (456)
Q Consensus 264 iqL~~DP~~lie~~L~r~~~~~AiskHp~R~ciYEEA~a~~~~~Ky~d~~~I~~Qm~~Y-r~eGlp~~s~~Kp~~sglpE 342 (456)
+.+.+|+..|.+--+ ++..+|+..-.. - ....+ .| +..|++. .. ..+-
T Consensus 106 ~iv~~di~~L~~~~l--~~~~~aav~d~~----~------~~~~~------------~~~~~~~~~~---~~----~yfN 154 (246)
T cd00505 106 ILVLTDIDELWDTPL--GGQELAAAPDPG----D------RREGK------------YYRQKRSHLA---GP----DYFN 154 (246)
T ss_pred eeeccCHHHHhhccC--CCCeEEEccCch----h------hhccc------------hhhcccCCCC---CC----Ccee
Confidence 999999888887555 556788764321 0 00001 01 1223431 11 1234
Q ss_pred ceEEE------ccCCCcchhhHHHHHHHHhhCCCCCCcchHHHHhHh
Q 038460 343 TAIIL------RKHGLSNNLFSCLLYNELEAFNPRDQLPFAYVRDLM 383 (456)
Q Consensus 343 ~~vIi------R~H~p~snlfmclWfnEv~rft~RDQLSF~YVlwk~ 383 (456)
++|++ |++... ......|.+...+..--||=.++.+....
T Consensus 155 sGVmlinl~~~r~~~~~-~~~~~~~~~~~~~~~~~DQd~LN~~~~~~ 200 (246)
T cd00505 155 SGVFVVNLSKERRNQLL-KVALEKWLQSLSSLSGGDQDLLNTFFKQV 200 (246)
T ss_pred eeeEEEechHHHHHHHH-HHHHHHHHhhcccCccCCcHHHHHHHhcC
Confidence 56666 333222 22334555556678899999999998765
No 5
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 8 GT8 from CAZY comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase (2.4.1.44 from EC), lipopolysaccharide glucosyltransferase 1 (2.4.1.58 from EC), glycogenin glucosyltransferase (2.4.1.186 from EC), inositol 1-alpha-galactosyltransferase (2.4.1.123 from EC). These enzymes have a distant similarity to family GT_24. ; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 1LL0_D 1ZCV_A 3USR_A 3V90_A 1ZCU_A 1ZCT_A 3V91_A 1ZCY_A 1ZDG_A 1ZDF_A ....
Probab=61.78 E-value=5.9 Score=36.58 Aligned_cols=50 Identities=12% Similarity=0.204 Sum_probs=36.1
Q ss_pred ccccceeeecccCCCCCEEEEEeCceeEecCHHHHHHHHHhcCCCeEEecCC
Q 038460 239 NVVIPKYLVHRLFPNSKYSIWINAQLQLMVDPLLLIHALVVAEDVDMAIPKH 290 (456)
Q Consensus 239 ngKipKlLpHrlFPny~ySIWIDgkiqL~~DP~~lie~~L~r~~~~~AiskH 290 (456)
..-+-|++.+.+||+++--||+|+-+.+++|+..|.+.-+ ++..+|+...
T Consensus 84 ~~~~~rl~i~~ll~~~drilyLD~D~lv~~dl~~lf~~~~--~~~~~~a~~~ 133 (250)
T PF01501_consen 84 PATFARLFIPDLLPDYDRILYLDADTLVLGDLDELFDLDL--QGKYLAAVED 133 (250)
T ss_dssp GGGGGGGGHHHHSTTSSEEEEE-TTEEESS-SHHHHC-----TTSSEEEEE-
T ss_pred HHHHHHhhhHHHHhhcCeEEEEcCCeeeecChhhhhcccc--hhhhcccccc
Confidence 3344689999999999999999999999999888887544 4556666555
No 6
>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=44.70 E-value=33 Score=34.29 Aligned_cols=96 Identities=15% Similarity=0.225 Sum_probs=59.2
Q ss_pred ceEEEEEeehhhhhhhhhcccccccccCCcccceEEEEecccCCCCC----C---------------ccccc-----cce
Q 038460 189 NVCFFMFIDDVTLKGFRYHQLIPRKVLDYKIGAWRIVKVSRKNLYSN----P---------------AKNVV-----IPK 244 (456)
Q Consensus 189 ~VCF~mFtD~~tl~~l~~~~~ip~~~~~~~~g~WrIV~V~~~nly~D----~---------------rrngK-----ipK 244 (456)
++.|..|||..+.+.++.--... ....-..+++.++.+.+... + .+... +.+
T Consensus 29 ~~~fhvvtd~~s~~~~~~~~~~~----~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~y~R 104 (257)
T cd06429 29 NLVFHIVTDNQNYGAMRSWFDLN----PLKIATVKVLNFDDFKLLGKVKVDSLMQLESEADTSNLKQRKPEYISLLNFAR 104 (257)
T ss_pred ceEEEEecCccCHHHHHHHHHhc----CCCCceEEEEEeCcHHhhcccccchhhhhhccccccccccCCccccCHHHHHH
Confidence 68999999988766655532110 11134566777751111111 1 11111 345
Q ss_pred eeecccCCCCCEEEEEeCceeEecCHHHHHHHHHhcCCCeEEecCC
Q 038460 245 YLVHRLFPNSKYSIWINAQLQLMVDPLLLIHALVVAEDVDMAIPKH 290 (456)
Q Consensus 245 lLpHrlFPny~ySIWIDgkiqL~~DP~~lie~~L~r~~~~~AiskH 290 (456)
++.-.+||+.+--||+|+-+-+.+|..+|.+.=+ ++..+|+...
T Consensus 105 l~ip~llp~~~kvlYLD~Dviv~~dl~eL~~~dl--~~~~~aav~d 148 (257)
T cd06429 105 FYLPELFPKLEKVIYLDDDVVVQKDLTELWNTDL--GGGVAGAVET 148 (257)
T ss_pred HHHHHHhhhhCeEEEEeCCEEEeCCHHHHhhCCC--CCCEEEEEhh
Confidence 5666778999999999999999999888887533 4556666544
No 7
>PF15240 Pro-rich: Proline-rich
Probab=32.01 E-value=26 Score=33.93 Aligned_cols=19 Identities=53% Similarity=0.543 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHhhCC
Q 038460 21 SLLYLFSVMFLALYNALSP 39 (456)
Q Consensus 21 ~l~~~~~~~~l~~~~~~~~ 39 (456)
|||+||||+.|||--|=+.
T Consensus 1 MLlVLLSvALLALSSAQ~~ 19 (179)
T PF15240_consen 1 MLLVLLSVALLALSSAQST 19 (179)
T ss_pred ChhHHHHHHHHHhhhcccc
Confidence 6899999999998666553
No 8
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=30.75 E-value=47 Score=33.99 Aligned_cols=47 Identities=26% Similarity=0.413 Sum_probs=37.1
Q ss_pred eeeecccCCCCCEEEEEeCceeEecCHHHHHHHHHhcCCCeEEecCCCCC
Q 038460 244 KYLVHRLFPNSKYSIWINAQLQLMVDPLLLIHALVVAEDVDMAIPKHPFF 293 (456)
Q Consensus 244 KlLpHrlFPny~ySIWIDgkiqL~~DP~~lie~~L~r~~~~~AiskHp~R 293 (456)
-+|.|-|=|..++-+|+|+-|. .-|-.||+.++. .+.++-+++=..+
T Consensus 133 ~LL~~aL~p~~swVlWlDaDIv--~~P~~lI~dli~-~~kdIivPn~~~~ 179 (269)
T PF03452_consen 133 FLLSSALGPWHSWVLWLDADIV--ETPPTLIQDLIA-HDKDIIVPNCWRR 179 (269)
T ss_pred HHHHhhcCCcccEEEEEecCcc--cCChHHHHHHHh-CCCCEEccceeec
Confidence 3677788899999999999887 788899999874 5668877654333
No 9
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis. The catalytic domain of LARGE is a putative glycosyltransferase. Mutations of LARGE in mouse and human cause dystroglycanopathies, a disease associated with hypoglycosylation of the membrane protein alpha-dystroglycan (alpha-DG) and consequent loss of extracellular ligand binding. LARGE needs to both physically interact with alpha-dystroglycan and function as a glycosyltransferase in order to stimulate alpha-dystroglycan hyperglycosylation. LARGE localizes to the Golgi apparatus and contains three conserved DxD motifs. While two of the motifs are indispensible for glycosylation function, one is important for localization of th eenzyme. LARGE was originally named because it covers approximately large trunck of genomic DNA, more than 600bp long. The predicted protein structure contains an N-terminal cytoplasmic domain, a transmembrane region, a coiled-coil
Probab=24.93 E-value=67 Score=32.44 Aligned_cols=98 Identities=8% Similarity=0.104 Sum_probs=59.5
Q ss_pred CceEEEEEeehhhhhhhhhcc-cccccccCCcccceEEEEecc--cCC--CCCCcccccc--ceeeecccCC-CCCEEEE
Q 038460 188 DNVCFFMFIDDVTLKGFRYHQ-LIPRKVLDYKIGAWRIVKVSR--KNL--YSNPAKNVVI--PKYLVHRLFP-NSKYSIW 259 (456)
Q Consensus 188 ~~VCF~mFtD~~tl~~l~~~~-~ip~~~~~~~~g~WrIV~V~~--~nl--y~D~rrngKi--pKlLpHrlFP-ny~ySIW 259 (456)
..+.|+.++|+.+.+.++.-. ... .....+..+.++. ..+ .....-.+.+ .+++.+.+|| +++--||
T Consensus 29 ~~~~fhii~d~~s~~~~~~l~~~~~-----~~~~~i~f~~i~~~~~~~~~~~~~~~s~~y~y~RL~ip~llp~~~dkvLY 103 (280)
T cd06431 29 NPLHFHLITDEIARRILATLFQTWM-----VPAVEVSFYNAEELKSRVSWIPNKHYSGIYGLMKLVLTEALPSDLEKVIV 103 (280)
T ss_pred CCEEEEEEECCcCHHHHHHHHHhcc-----ccCcEEEEEEhHHhhhhhccCcccchhhHHHHHHHHHHHhchhhcCEEEE
Confidence 458999999976654433321 111 1123455666630 011 0111222222 4788999999 6999999
Q ss_pred EeCceeEecCHHHHHHHHH-hcCCCeEEecCC
Q 038460 260 INAQLQLMVDPLLLIHALV-VAEDVDMAIPKH 290 (456)
Q Consensus 260 IDgkiqL~~DP~~lie~~L-~r~~~~~AiskH 290 (456)
+|+-+-+.+|+.+|.+-+. ..++.-+|+..+
T Consensus 104 LD~Diiv~~di~eL~~~~~~~~~~~~~a~v~~ 135 (280)
T cd06431 104 LDTDITFATDIAELWKIFHKFTGQQVLGLVEN 135 (280)
T ss_pred EcCCEEEcCCHHHHHHHhhhcCCCcEEEEecc
Confidence 9999999999999887641 224446676654
No 10
>PF03314 DUF273: Protein of unknown function, DUF273; InterPro: IPR004988 This is a family of proteins of unknown function.
Probab=22.99 E-value=1.1e+02 Score=30.82 Aligned_cols=63 Identities=19% Similarity=0.261 Sum_probs=46.1
Q ss_pred ecccCCCCCEEEEEeCceeEecCHHHHHHHHHhcCCCeEEecCCCCCCChHHHHHHHHHhhccCChHHHH
Q 038460 247 VHRLFPNSKYSIWINAQLQLMVDPLLLIHALVVAEDVDMAIPKHPFFIHTMEEAMATARWKKWWDVESLQ 316 (456)
Q Consensus 247 pHrlFPny~ySIWIDgkiqL~~DP~~lie~~L~r~~~~~AiskHp~R~ciYEEA~a~~~~~Ky~d~~~I~ 316 (456)
.++++|++++-+++||-+-+ ++|...||.|+ .++.++-...- ..=.|+.|..-+-| +.+.+++
T Consensus 35 va~~L~~~~~vlflDaDigV-vNp~~~iEefi-d~~~Di~fydR----~~n~Ei~agsYlvk-NT~~~~~ 97 (222)
T PF03314_consen 35 VAKILPEYDWVLFLDADIGV-VNPNRRIEEFI-DEGYDIIFYDR----FFNWEIAAGSYLVK-NTEYSRD 97 (222)
T ss_pred HHHHhccCCEEEEEcCCcee-ecCcccHHHhc-CCCCcEEEEec----ccchhhhhccceee-CCHHHHH
Confidence 46678999999999999876 78999999998 46677766432 22367777666666 5555544
No 11
>KOG0400 consensus 40S ribosomal protein S13 [Translation, ribosomal structure and biogenesis]
Probab=20.66 E-value=96 Score=29.16 Aligned_cols=51 Identities=25% Similarity=0.525 Sum_probs=37.6
Q ss_pred CCeEEecCCCCCCChHHHHHHHHHhhccCChHHHHHHHHHHHHCCCCCCCCCCCCCCCCCcceEEEc-cCC
Q 038460 282 DVDMAIPKHPFFIHTMEEAMATARWKKWWDVESLQRQMETYCKNGLQPWSSNKPYPTDVPNTAIILR-KHG 351 (456)
Q Consensus 282 ~~~~AiskHp~R~ciYEEA~a~~~~~Ky~d~~~I~~Qm~~Yr~eGlp~~s~~Kp~~sglpE~~vIiR-~H~ 351 (456)
+-.++-+.-|+|..+ =.|-|- +.+.|++|+-++-+.||+| | .-++|+| +|.
T Consensus 8 GKGis~SAlPY~r~~-------PtWlK~-~~ddvkeqI~K~akKGltp--------s---qIGviLRDshG 59 (151)
T KOG0400|consen 8 GKGISGSALPYRRSV-------PTWLKL-TADDVKEQIYKLAKKGLTP--------S---QIGVILRDSHG 59 (151)
T ss_pred CcccccCccccccCC-------cHHHhc-CHHHHHHHHHHHHHcCCCh--------h---HceeeeecccC
Confidence 345777888888876 123343 5899999999999999996 2 3479998 554
Done!