Query 038460
Match_columns 456
No_of_seqs 112 out of 130
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 19:36:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038460.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038460hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tzt_A Glycosyl transferase fa 63.8 3.6 0.00012 39.3 2.8 47 242-290 88-135 (276)
2 1g9r_A Glycosyl transferase; a 37.1 11 0.00038 36.2 1.3 47 242-290 84-130 (311)
3 1o7q_A N-acetyllactosaminide a 11.1 68 0.0023 31.9 0.8 111 147-269 34-154 (289)
4 2lxi_A RNA-binding protein 10; 11.1 2.1E+02 0.0073 21.9 3.6 53 143-205 5-62 (91)
5 2ope_A PILX; type IV pilin, mi 9.2 1.2E+02 0.004 26.9 1.5 11 253-263 85-95 (128)
6 4gox_A Polyketide synthase; ol 7.6 1.6E+02 0.0055 27.0 1.8 24 248-278 143-166 (313)
7 4ayl_A BOGT-metal-independent 7.6 1.1E+02 0.0036 29.9 0.5 65 190-269 36-103 (246)
8 2yuf_A NGFI-A-binding protein 7.4 41 0.0014 30.1 -2.2 32 147-181 55-86 (142)
9 2hgm_A HNRPF protein, heteroge 6.8 8.8E+02 0.03 20.2 5.9 55 143-207 46-104 (126)
10 3u2u_A Glycogenin-1, GN-1, GN1 6.7 3E+02 0.01 26.2 3.3 39 236-275 79-117 (263)
No 1
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0
Probab=63.84 E-value=3.6 Score=39.31 Aligned_cols=47 Identities=15% Similarity=0.236 Sum_probs=38.4
Q ss_pred cceeeecccCC-CCCEEEEEeCceeEecCHHHHHHHHHhcCCCeEEecCC
Q 038460 242 IPKYLVHRLFP-NSKYSIWINAQLQLMVDPLLLIHALVVAEDVDMAIPKH 290 (456)
Q Consensus 242 ipKlLpHrlFP-ny~ySIWIDgkiqL~~DP~~lie~~L~r~~~~~AiskH 290 (456)
+.|++...+|| +++--||+|+-+.+++|+..|.+.=+ ++..+|+..+
T Consensus 88 ~~rl~~~~l~p~~~~kvlylD~D~iv~~di~~L~~~dl--~~~~~aav~d 135 (276)
T 3tzt_A 88 YYRLLAGEFLPENLGEILYLDPDMLVINPLDDLLRTDI--SDYILAAASH 135 (276)
T ss_dssp HHHHTHHHHSCTTCCEEEEECSSEEECSCSHHHHTCCC--TTSSEEEEEC
T ss_pred HHHHHHHHHcccccCeEEEEeCCeeecCCHHHHhhcCC--CCCeEEEEEe
Confidence 45788889999 69999999999999999888887322 4557888766
No 2
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*
Probab=37.10 E-value=11 Score=36.20 Aligned_cols=47 Identities=4% Similarity=0.036 Sum_probs=36.5
Q ss_pred cceeeecccCCCCCEEEEEeCceeEecCHHHHHHHHHhcCCCeEEecCC
Q 038460 242 IPKYLVHRLFPNSKYSIWINAQLQLMVDPLLLIHALVVAEDVDMAIPKH 290 (456)
Q Consensus 242 ipKlLpHrlFPny~ySIWIDgkiqL~~DP~~lie~~L~r~~~~~AiskH 290 (456)
+.|++...+||+++--||+|+-+.+.+|+..|.+.-+ ++..+|+..+
T Consensus 84 y~Rl~l~~ll~~~~kvlyLD~D~iv~~di~eL~~~~l--~~~~~aav~d 130 (311)
T 1g9r_A 84 YARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDL--GDNWLGASID 130 (311)
T ss_dssp GGGGGHHHHCCSCSCEEEECSSEEECSCCHHHHTCCC--TTCSEEEEEC
T ss_pred HHHHHHHHHhhhcCEEEEEcCCeEeccCHHHHhccCC--CCcEEEEEec
Confidence 4567777788999999999999999999888876322 4556776554
No 3
>1o7q_A N-acetyllactosaminide alpha-1,3- galactosyltransferase; 3-galactosyltransferase-UDP complex, glycosyltransferase, glycoprotein, transmembrane; HET: GAL NAG UDP; 1.3A {Bos taurus} SCOP: c.68.1.9 PDB: 1gwv_A* 1gx0_A* 1gww_A* 1k4v_A* 1gx4_A* 2jco_A 1g8o_A* 1fg5_N* 1g93_A* 2wgz_A* 1o7o_A* 2vs4_A* 2jck_A* 2jcl_A 2vfz_A* 2vs3_A* 1vzu_A* 1vzx_A* 1vzt_A* 2jcj_A* ...
Probab=11.12 E-value=68 Score=31.87 Aligned_cols=111 Identities=10% Similarity=0.117 Sum_probs=57.4
Q ss_pred CCCChhhHHHhhcCCcEEEEEEeeCCCC-CCCCC-----C--CCCCCCCCceEEEEEeehhhhhhhhhcccccccccCCc
Q 038460 147 FPISNSDRIEMENCNGVVVVSAIFDDHD-KIRQP-----K--GLGSKTLDNVCFFMFIDDVTLKGFRYHQLIPRKVLDYK 218 (456)
Q Consensus 147 F~i~~~d~~~m~~c~kvVVyTAIFG~YD-~L~~P-----~--~i~~~s~~~VCF~mFtD~~tl~~l~~~~~ip~~~~~~~ 218 (456)
|+.+=-+..|-...-+|.+.---+|.|- ...+. + .+-. -.|-|+.|||+.. .+|.. +-+.
T Consensus 34 f~~~~l~~~~~~~n~tIGl~vfa~GkY~~~fl~~Fl~SAEk~Fm~g---~~v~YYVFTD~~~--------~~p~v-~l~~ 101 (289)
T 1o7q_A 34 YNRAVLDNYYAKQKITVGLTVFAVGRYIEHYLEEFLTSANKHFMVG---HPVIFYIMVDDVS--------RMPLI-ELGP 101 (289)
T ss_dssp BCHHHHHHHHHHHTCCEEEEEEECTTHHHHHHHHHHHHHHHHBSTT---SCEEEEEEESCGG--------GCCCC-CCCT
T ss_pred CCHHHHHHHHHhhCCeEEEEEEEecccHHHHHHHHHHHHHHhccCC---CeEEEEEEeCChh--------hCCcc-ccCC
Confidence 4443344444444446666666667774 11111 0 1211 2588999999753 22311 0011
Q ss_pred ccceEEEEecccCCCC--CCccccccceeeecccCCCCCEEEEEeCceeEecC
Q 038460 219 IGAWRIVKVSRKNLYS--NPAKNVVIPKYLVHRLFPNSKYSIWINAQLQLMVD 269 (456)
Q Consensus 219 ~g~WrIV~V~~~nly~--D~rrngKipKlLpHrlFPny~ySIWIDgkiqL~~D 269 (456)
.-.=+|+.|..+.... ..+|..-+-+...-+++-+++|-+..|+++.+..+
T Consensus 102 ~r~~~V~~i~~~~~W~d~sm~Rm~~i~~~~~~~~~~evDYLf~~dvd~~F~~~ 154 (289)
T 1o7q_A 102 LRSFKVFKIKPEKRWQDISMMRMKTIGEHIVAHIQHEVDFLFCMDVDQVFQDK 154 (289)
T ss_dssp TEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHTHHHHCSEEEEECSSEEECSC
T ss_pred CCeEEEEEeccccCCchhHHHHHHHHHHHHHHHHhhcCCEEEEeeCCcEeecc
Confidence 1112345554222222 33344333333334568999999999999999876
No 4
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=11.12 E-value=2.1e+02 Score=21.90 Aligned_cols=53 Identities=9% Similarity=0.119 Sum_probs=30.4
Q ss_pred cccC--CCCChhhHHH-hhcCCcEEEEEEeeC-CCCCCCCCCCCCCCCCCceEEEEEeehhhh-hhhh
Q 038460 143 FFKK--FPISNSDRIE-MENCNGVVVVSAIFD-DHDKIRQPKGLGSKTLDNVCFFMFIDDVTL-KGFR 205 (456)
Q Consensus 143 F~~~--F~i~~~d~~~-m~~c~kvVVyTAIFG-~YD~L~~P~~i~~~s~~~VCF~mFtD~~tl-~~l~ 205 (456)
|++| ++++++|... ++++ | .-..++-+..-.....+.++|+-|.+.+.. ++++
T Consensus 5 ~v~nLp~~~te~~l~~~F~~~----------G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~ 62 (91)
T 2lxi_A 5 MLRMLPQAATEDDIRGQLQSH----------GVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWME 62 (91)
T ss_dssp EEETCCSSCCHHHHHHHHHHH----------TCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHHh----------CCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHH
Confidence 5666 6888888776 4444 3 233343333221123467999999995544 3343
No 5
>2ope_A PILX; type IV pilin, minor pilin, bacterial pathogenesis, adhesion, aggregation, filament, cell adhesion; 2.40A {Neisseria meningitidis} PDB: 2opd_A
Probab=9.16 E-value=1.2e+02 Score=26.94 Aligned_cols=11 Identities=27% Similarity=0.727 Sum_probs=9.7
Q ss_pred CCCEEEEEeCc
Q 038460 253 NSKYSIWINAQ 263 (456)
Q Consensus 253 ny~ySIWIDgk 263 (456)
.|.||+|+|+.
T Consensus 85 gYtlsvwmdS~ 95 (128)
T 2ope_A 85 GYTLSVWMNSV 95 (128)
T ss_dssp SCCCEEEEETT
T ss_pred CeeEEEEEccC
Confidence 68999999985
No 6
>4gox_A Polyketide synthase; olefin synthase, hydrocarbon, sulfotran PAPS, PAP, 3'phosphoadenosine-5'phosphosulfate, transferase; HET: A3P; 2.15A {Synechococcus SP}
Probab=7.61 E-value=1.6e+02 Score=27.04 Aligned_cols=24 Identities=29% Similarity=0.622 Sum_probs=19.6
Q ss_pred cccCCCCCEEEEEeCceeEecCHHHHHHHHH
Q 038460 248 HRLFPNSKYSIWINAQLQLMVDPLLLIHALV 278 (456)
Q Consensus 248 HrlFPny~ySIWIDgkiqL~~DP~~lie~~L 278 (456)
+++||++++ |-|+.||..++.++.
T Consensus 143 ~~~fP~ak~-------I~~~RdP~d~~~S~~ 166 (313)
T 4gox_A 143 EILFDQAKY-------IHLVRHPYAVIESFT 166 (313)
T ss_dssp HHHBSSEEE-------EEEECCHHHHHHHHH
T ss_pred HHHCCCCEE-------EEEEeChHHHHHHHH
Confidence 567998876 567899999999876
No 7
>4ayl_A BOGT-metal-independent glycosyltransferase; histo-blood group enzyme; HET: EPE; 1.92A {Bacteroides ovatus} PDB: 4ayj_A*
Probab=7.60 E-value=1.1e+02 Score=29.85 Aligned_cols=65 Identities=18% Similarity=0.356 Sum_probs=40.1
Q ss_pred eEEEEEeehhhhhhhhhcccccccccCCcccceEEEEecccCC-CCCC--ccccccceeeecccCCCCCEEEEEeCceeE
Q 038460 190 VCFFMFIDDVTLKGFRYHQLIPRKVLDYKIGAWRIVKVSRKNL-YSNP--AKNVVIPKYLVHRLFPNSKYSIWINAQLQL 266 (456)
Q Consensus 190 VCF~mFtD~~tl~~l~~~~~ip~~~~~~~~g~WrIV~V~~~nl-y~D~--rrngKipKlLpHrlFPny~ySIWIDgkiqL 266 (456)
|-|+.|||+.. .+|. ++.++|+++..+.. ..|. +|..-+-+. -.++--+++|-+-.|+++.+
T Consensus 36 V~yYVFTD~~~--------~vp~------~~~~~v~~~~~~~~~Wqd~sm~Rm~~i~~~-~~~~~~evDyLf~~dvd~~F 100 (246)
T 4ayl_A 36 IEYYVFTDSPK--------LYDE------ENNKHIHRIKQKNLGWPDNTLKRFHIFLRI-KEQLERETDYLFFFNANLLF 100 (246)
T ss_dssp EEEEEEESCSC--------CTTT------TTCTTEEEEECCCCCTTHHHHTHHHHHHTT-HHHHHHHCSEEEEECTTEEE
T ss_pred eEEEEEeCChh--------hCCc------CCCceEEEEeCCcCCCcccchHHHHHHHHH-HHHHHhhCCEEEEEeCCcee
Confidence 88999999753 2332 22334444431233 4433 344444343 45666679999999999999
Q ss_pred ecC
Q 038460 267 MVD 269 (456)
Q Consensus 267 ~~D 269 (456)
..+
T Consensus 101 ~~~ 103 (246)
T 4ayl_A 101 TSP 103 (246)
T ss_dssp CSC
T ss_pred ecc
Confidence 876
No 8
>2yuf_A NGFI-A-binding protein 1; transcriptional repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=7.35 E-value=41 Score=30.15 Aligned_cols=32 Identities=25% Similarity=0.359 Sum_probs=26.6
Q ss_pred CCCChhhHHHhhcCCcEEEEEEeeCCCCCCCCCCC
Q 038460 147 FPISNSDRIEMENCNGVVVVSAIFDDHDKIRQPKG 181 (456)
Q Consensus 147 F~i~~~d~~~m~~c~kvVVyTAIFG~YD~L~~P~~ 181 (456)
|.|++.|-..|+.-+| ||||+|-.|.-+.|..
T Consensus 55 ~~m~~~dp~r~~EiRK---YSaIYGRFDsKRr~~K 86 (142)
T 2yuf_A 55 FEMNDDDPHKEEEIRK---YSAIYGRFDSKRKDGK 86 (142)
T ss_dssp HHSCSSCHHHHHHHHH---HCCSSSCSCCCTTCCC
T ss_pred HcCCCCChHHHHHHHH---HHHHHcccccccCCCC
Confidence 7888888888876544 8999999999998863
No 9
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=6.75 E-value=8.8e+02 Score=20.18 Aligned_cols=55 Identities=13% Similarity=0.211 Sum_probs=31.9
Q ss_pred cccC--CCCChhhHHH-hhcCCcEEEEEEeeCCCCCCCCCCCCCCCCCCceEEEEEeehhhh-hhhhhc
Q 038460 143 FFKK--FPISNSDRIE-MENCNGVVVVSAIFDDHDKIRQPKGLGSKTLDNVCFFMFIDDVTL-KGFRYH 207 (456)
Q Consensus 143 F~~~--F~i~~~d~~~-m~~c~kvVVyTAIFG~YD~L~~P~~i~~~s~~~VCF~mFtD~~tl-~~l~~~ 207 (456)
|+.+ |++++.|+.. .++| +|+...+..- +|.--. .+.++|+-|.+.+.. ++++.+
T Consensus 46 fVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~-~d~~Gr--------srGfaFV~F~~~e~A~~Al~~~ 104 (126)
T 2hgm_A 46 RLRGLPFGCTKEEIVQFFSGL-EIVPNGITLP-VDPEGK--------ITGEAFVQFASQELAEKALGKH 104 (126)
T ss_dssp EEECCCTTCCHHHHHHHTTTS-CEEEEEEECC-CCSSSS--------SCSEEEEEESSTTHHHHHHTTT
T ss_pred EEeCCCCCCCHHHHHHHHhcC-CceeeEEEEE-ECCCCC--------CceEEEEEECCHHHHHHHHHHC
Confidence 5566 7999988655 7888 7663222221 221122 246899999986544 344433
No 10
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A
Probab=6.73 E-value=3e+02 Score=26.17 Aligned_cols=39 Identities=15% Similarity=0.213 Sum_probs=30.3
Q ss_pred CccccccceeeecccCCCCCEEEEEeCceeEecCHHHHHH
Q 038460 236 PAKNVVIPKYLVHRLFPNSKYSIWINAQLQLMVDPLLLIH 275 (456)
Q Consensus 236 ~rrngKipKlLpHrlFPny~ySIWIDgkiqL~~DP~~lie 275 (456)
++...-+-|++.-++. +|+--||+|+-+.+.+|+..|.+
T Consensus 79 p~~~~~~~kl~~~~l~-~~~~vlylD~D~~v~~~~~~Lf~ 117 (263)
T 3u2u_A 79 PELGVTLTKLHCWSLT-QYSKCVFMDADTLVLANIDDLFD 117 (263)
T ss_dssp TTGGGGGGGGGGGGCT-TCSEEEEECTTEEECSCCGGGGG
T ss_pred cchhHHhHHHHhcccc-CcceEEEEcCCEeeccCHHHHhC
Confidence 3334567788888875 69999999999999999655543
Done!