BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038464
         (404 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2J9H|A Chain A, Crystal Structure Of Human Glutathione-S-Transferase P1-1
           Cys-Free Mutant In Complex With S-Hexylglutathione At
           2.4 A Resolution
 pdb|2J9H|B Chain B, Crystal Structure Of Human Glutathione-S-Transferase P1-1
           Cys-Free Mutant In Complex With S-Hexylglutathione At
           2.4 A Resolution
          Length = 209

 Score = 29.3 bits (64), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 44/101 (43%), Gaps = 7/101 (6%)

Query: 127 IVSNPVTGSSRELPPLDADTENQSLHAIVMTTSSKNPSNYKLVLVYGELPK-----LSFK 181
           +V  PV G S  L  L AD + QS    V+T  +    + K   +YG+LPK     L+  
Sbjct: 5   VVYFPVRGRSAALRMLLAD-QGQSWKEEVVTVETWQEGSLKASALYGQLPKFQDGDLTLY 63

Query: 182 VYNSCLNCWEEETLLLSRKSEQALEVDSI-DHHDDEDAVYF 221
             N+ L        L  +  ++A  VD + D  +D  A Y 
Sbjct: 64  QSNTILRHLGRTLGLYGKDQQEAALVDMVNDGVEDLRAKYI 104


>pdb|2HRV|A Chain A, 2a Cysteine Proteinase From Human Rhinovirus 2
 pdb|2HRV|B Chain B, 2a Cysteine Proteinase From Human Rhinovirus 2
          Length = 142

 Score = 28.9 bits (63), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 224 KAGNVVATNMQRSPSKQYSSVITSKDGEEIVYFLNSCGT--IVACNLTQKSF 273
             GN++  N+    S+ + S++ S   + I+Y  N+ G   I +C+ TQ ++
Sbjct: 8   HVGNLIYRNLHLFNSEMHESILVSYSSDLIIYRTNTVGDDYIPSCDCTQATY 59


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.132    0.407 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,080,396
Number of Sequences: 62578
Number of extensions: 420136
Number of successful extensions: 815
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 815
Number of HSP's gapped (non-prelim): 5
length of query: 404
length of database: 14,973,337
effective HSP length: 101
effective length of query: 303
effective length of database: 8,652,959
effective search space: 2621846577
effective search space used: 2621846577
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)