Query 038464
Match_columns 404
No_of_seqs 157 out of 1884
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 11:20:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038464.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038464hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01640 F_box_assoc_1 F-box 99.9 1.3E-23 2.8E-28 185.7 23.0 222 110-373 1-230 (230)
2 KOG4441 Proteins containing BT 99.9 1.3E-23 2.9E-28 206.4 24.4 241 85-383 303-557 (571)
3 PHA02713 hypothetical protein; 99.9 1.7E-23 3.6E-28 206.6 24.3 258 85-380 274-542 (557)
4 KOG4441 Proteins containing BT 99.8 3.2E-19 6.9E-24 175.6 21.8 214 112-382 282-510 (571)
5 PHA03098 kelch-like protein; P 99.8 2E-18 4.4E-23 171.6 25.2 241 86-382 267-522 (534)
6 PHA02790 Kelch-like protein; P 99.8 2.1E-18 4.6E-23 168.0 22.6 202 111-379 268-478 (480)
7 PHA02713 hypothetical protein; 99.8 1.9E-18 4.1E-23 170.8 22.1 202 125-382 273-500 (557)
8 TIGR03547 muta_rot_YjhT mutatr 99.8 1.9E-17 4.2E-22 155.6 26.6 254 108-383 11-310 (346)
9 PLN02153 epithiospecifier prot 99.8 3.7E-17 8E-22 153.1 25.8 247 91-380 5-293 (341)
10 PRK14131 N-acetylneuraminic ac 99.8 5.4E-17 1.2E-21 153.8 24.5 264 96-382 20-331 (376)
11 PLN02193 nitrile-specifier pro 99.8 2.9E-16 6.4E-21 152.6 26.3 237 93-381 151-420 (470)
12 PHA02790 Kelch-like protein; P 99.8 4.1E-17 8.9E-22 159.0 20.1 185 85-326 289-477 (480)
13 PLN03215 ascorbic acid mannose 99.8 1.7E-16 3.7E-21 145.0 22.2 297 20-379 2-354 (373)
14 TIGR03548 mutarot_permut cycli 99.7 1.5E-15 3.2E-20 141.3 23.0 221 110-382 9-290 (323)
15 PLN02153 epithiospecifier prot 99.7 2.6E-15 5.7E-20 140.6 24.6 208 84-328 51-293 (341)
16 PHA03098 kelch-like protein; P 99.7 1.7E-15 3.8E-20 150.6 21.0 201 85-331 313-523 (534)
17 PRK14131 N-acetylneuraminic ac 99.7 1.6E-14 3.4E-19 137.0 25.8 244 84-377 51-374 (376)
18 TIGR03547 muta_rot_YjhT mutatr 99.7 1.8E-14 4E-19 135.4 25.8 220 84-358 30-329 (346)
19 TIGR03548 mutarot_permut cycli 99.7 7.4E-15 1.6E-19 136.6 21.4 212 94-358 52-311 (323)
20 PLN02193 nitrile-specifier pro 99.6 1.2E-13 2.7E-18 134.4 24.5 201 85-330 195-421 (470)
21 KOG4693 Uncharacterized conser 99.4 5.5E-11 1.2E-15 101.1 18.6 233 86-356 47-308 (392)
22 KOG4693 Uncharacterized conser 99.2 2.8E-09 6E-14 90.9 17.0 212 123-380 43-285 (392)
23 KOG0379 Kelch repeat-containin 99.1 2.2E-08 4.8E-13 97.6 20.5 224 110-381 66-311 (482)
24 KOG0379 Kelch repeat-containin 99.0 1.5E-08 3.2E-13 98.8 18.1 205 85-330 90-312 (482)
25 PF08268 FBA_3: F-box associat 99.0 4.7E-09 1E-13 83.6 11.6 70 262-331 21-93 (129)
26 KOG1230 Protein containing rep 99.0 3.6E-08 7.9E-13 89.1 16.5 209 124-378 98-347 (521)
27 PF12937 F-box-like: F-box-lik 98.8 3.1E-09 6.8E-14 68.1 3.3 40 22-61 1-40 (47)
28 PF07734 FBA_1: F-box associat 98.7 2.5E-07 5.5E-12 76.9 12.8 113 262-379 22-147 (164)
29 PF00646 F-box: F-box domain; 98.7 5.8E-09 1.3E-13 67.3 2.0 45 21-65 2-46 (48)
30 smart00256 FBOX A Receptor for 98.6 4E-08 8.7E-13 61.0 2.8 39 25-63 1-39 (41)
31 KOG0281 Beta-TrCP (transducin 98.4 3.5E-05 7.6E-10 68.5 16.4 40 22-61 75-118 (499)
32 KOG1230 Protein containing rep 98.1 0.00023 5E-09 65.1 16.0 171 178-380 98-289 (521)
33 KOG4152 Host cell transcriptio 98.1 9E-05 1.9E-09 69.4 13.5 232 111-378 39-309 (830)
34 KOG4152 Host cell transcriptio 97.9 0.0002 4.3E-09 67.2 13.2 253 51-357 18-339 (830)
35 COG3055 Uncharacterized protei 97.9 0.00026 5.6E-09 63.7 12.7 193 116-332 48-268 (381)
36 KOG2120 SCF ubiquitin ligase, 97.7 3.5E-05 7.5E-10 67.8 3.4 40 20-59 96-135 (419)
37 PF13964 Kelch_6: Kelch motif 97.6 0.00018 3.8E-09 46.6 5.3 38 107-144 4-48 (50)
38 PF13964 Kelch_6: Kelch motif 97.6 0.00014 3.1E-09 47.0 4.5 44 288-331 5-48 (50)
39 PF01344 Kelch_1: Kelch motif; 97.5 0.00034 7.5E-09 44.4 5.8 43 288-330 5-47 (47)
40 PF07646 Kelch_2: Kelch motif; 97.4 0.00037 8E-09 44.8 4.5 44 287-330 4-49 (49)
41 COG3055 Uncharacterized protei 97.3 0.0078 1.7E-07 54.5 13.8 157 187-382 69-266 (381)
42 PF13418 Kelch_4: Galactose ox 96.9 0.0029 6.3E-08 40.5 5.4 43 288-330 5-48 (49)
43 PF01344 Kelch_1: Kelch motif; 96.8 0.004 8.7E-08 39.4 5.4 40 151-198 4-47 (47)
44 PF07893 DUF1668: Protein of u 96.3 0.11 2.4E-06 48.6 13.8 115 262-382 87-218 (342)
45 PF07893 DUF1668: Protein of u 96.2 1.1 2.5E-05 41.9 19.8 106 83-195 86-216 (342)
46 KOG2997 F-box protein FBX9 [Ge 96.1 0.0032 7E-08 56.0 2.1 43 22-64 107-154 (366)
47 PF13415 Kelch_3: Galactose ox 95.8 0.026 5.6E-07 36.0 4.9 30 123-155 18-47 (49)
48 COG4257 Vgb Streptogramin lyas 95.7 0.2 4.4E-06 44.1 11.4 143 89-282 174-318 (353)
49 KOG0274 Cdc4 and related F-box 95.7 1.4 3.1E-05 43.8 18.6 45 19-63 105-149 (537)
50 PF13415 Kelch_3: Galactose ox 95.6 0.016 3.5E-07 37.1 3.4 38 294-331 1-39 (49)
51 smart00612 Kelch Kelch domain. 95.6 0.017 3.7E-07 36.2 3.5 32 167-199 1-35 (47)
52 PF07250 Glyoxal_oxid_N: Glyox 95.6 0.51 1.1E-05 41.6 13.7 159 178-382 46-209 (243)
53 PF13418 Kelch_4: Galactose ox 95.6 0.022 4.8E-07 36.3 4.0 30 114-143 12-48 (49)
54 PF07250 Glyoxal_oxid_N: Glyox 95.4 0.2 4.4E-06 44.0 10.6 91 85-186 48-148 (243)
55 smart00612 Kelch Kelch domain. 95.3 0.043 9.4E-07 34.3 4.7 30 124-156 15-44 (47)
56 PF07646 Kelch_2: Kelch motif; 95.3 0.055 1.2E-06 34.5 5.0 36 108-143 5-49 (49)
57 PRK11138 outer membrane biogen 93.6 7.1 0.00015 37.4 27.4 214 111-374 117-356 (394)
58 KOG2437 Muskelin [Signal trans 93.3 0.064 1.4E-06 50.9 2.9 114 262-378 289-419 (723)
59 TIGR03300 assembly_YfgL outer 92.8 8.8 0.00019 36.4 27.8 241 83-375 75-342 (377)
60 PRK11138 outer membrane biogen 92.6 9.8 0.00021 36.4 25.6 200 83-301 130-342 (394)
61 PLN02772 guanylate kinase 89.4 1.9 4.2E-05 40.7 8.1 82 288-373 28-110 (398)
62 TIGR01640 F_box_assoc_1 F-box 88.0 15 0.00032 32.0 12.7 113 262-380 71-186 (230)
63 KOG2437 Muskelin [Signal trans 87.8 1.6 3.5E-05 41.9 6.4 163 129-326 234-419 (723)
64 KOG0293 WD40 repeat-containing 87.3 27 0.00058 33.0 15.2 67 292-375 404-474 (519)
65 PF13854 Kelch_5: Kelch motif 85.1 2.4 5.1E-05 25.8 4.3 33 287-319 7-40 (42)
66 PLN02772 guanylate kinase 84.0 6.9 0.00015 37.1 8.7 60 109-174 29-95 (398)
67 smart00284 OLF Olfactomedin-li 83.6 32 0.00069 30.6 12.5 122 262-399 95-234 (255)
68 TIGR03300 assembly_YfgL outer 82.4 45 0.00097 31.5 24.8 215 111-377 62-305 (377)
69 PF13360 PQQ_2: PQQ-like domai 81.8 34 0.00073 29.6 19.0 54 81-137 44-101 (238)
70 PF13360 PQQ_2: PQQ-like domai 78.9 42 0.00091 29.0 19.3 107 262-378 87-200 (238)
71 PF08450 SGL: SMP-30/Gluconola 78.4 46 0.001 29.2 20.4 202 114-379 11-221 (246)
72 KOG0286 G-protein beta subunit 77.4 55 0.0012 29.5 13.8 53 124-188 77-129 (343)
73 KOG2055 WD40 repeat protein [G 77.4 20 0.00043 34.3 9.1 96 261-374 280-377 (514)
74 KOG4341 F-box protein containi 76.9 1.8 3.9E-05 40.8 2.3 35 24-58 74-108 (483)
75 COG4257 Vgb Streptogramin lyas 75.9 60 0.0013 29.2 17.7 219 87-380 87-314 (353)
76 PF09910 DUF2139: Uncharacteri 73.6 69 0.0015 29.1 11.0 103 260-375 77-185 (339)
77 PRK04792 tolB translocation pr 71.0 1.1E+02 0.0023 29.9 19.5 103 262-379 287-390 (448)
78 PF13013 F-box-like_2: F-box-l 70.9 5.1 0.00011 30.4 3.1 30 21-50 21-50 (109)
79 KOG3881 Uncharacterized conser 70.8 95 0.002 29.2 11.8 153 111-271 112-279 (412)
80 PF10282 Lactonase: Lactonase, 64.0 93 0.002 29.1 10.9 118 251-379 203-332 (345)
81 PF12768 Rax2: Cortical protei 62.2 1.2E+02 0.0027 27.4 10.8 104 85-195 18-130 (281)
82 KOG0281 Beta-TrCP (transducin 61.0 1.4E+02 0.0031 27.7 13.8 50 262-319 341-390 (499)
83 KOG3545 Olfactomedin and relat 60.8 1.2E+02 0.0026 26.8 12.7 31 366-398 197-227 (249)
84 PRK04043 tolB translocation pr 59.4 1.7E+02 0.0038 28.2 23.3 194 123-380 212-409 (419)
85 PF05096 Glu_cyclase_2: Glutam 57.6 1.4E+02 0.0031 26.7 13.4 174 167-399 57-241 (264)
86 PF10282 Lactonase: Lactonase, 53.9 1.9E+02 0.0041 27.0 18.2 72 252-327 257-332 (345)
87 PF02191 OLF: Olfactomedin-lik 53.8 1.6E+02 0.0035 26.2 16.7 122 261-399 89-229 (250)
88 PF09372 PRANC: PRANC domain; 53.1 12 0.00027 27.6 2.4 26 20-45 70-95 (97)
89 PRK04043 tolB translocation pr 53.1 2.2E+02 0.0048 27.5 13.8 103 261-378 213-316 (419)
90 PF06433 Me-amine-dh_H: Methyl 52.0 2E+02 0.0044 26.8 11.7 120 251-380 195-330 (342)
91 PF13859 BNR_3: BNR repeat-lik 50.5 64 0.0014 29.8 7.0 66 262-331 150-218 (310)
92 PRK00178 tolB translocation pr 50.5 2.4E+02 0.0052 27.1 19.1 162 162-378 207-370 (430)
93 PF03478 DUF295: Protein of un 50.2 19 0.0004 23.3 2.6 46 323-370 1-54 (54)
94 COG2706 3-carboxymuconate cycl 48.3 2.3E+02 0.005 26.4 17.7 75 114-195 156-232 (346)
95 TIGR02800 propeller_TolB tol-p 48.0 2.5E+02 0.0055 26.7 22.0 104 262-380 259-363 (417)
96 PRK03629 tolB translocation pr 47.9 2.7E+02 0.0058 27.0 19.2 103 262-379 268-371 (429)
97 KOG2502 Tub family proteins [G 46.9 11 0.00024 34.7 1.4 39 20-58 43-89 (355)
98 smart00564 PQQ beta-propeller 46.6 37 0.00081 18.7 3.3 26 111-136 3-28 (33)
99 PF12768 Rax2: Cortical protei 45.7 2.3E+02 0.0051 25.7 12.4 105 261-380 16-130 (281)
100 KOG3926 F-box proteins [Amino 44.0 23 0.0005 31.4 2.9 40 19-58 199-239 (332)
101 PRK05137 tolB translocation pr 43.5 3.1E+02 0.0068 26.5 26.2 63 123-195 225-287 (435)
102 COG4946 Uncharacterized protei 43.4 3.3E+02 0.0071 26.7 17.8 54 262-325 383-437 (668)
103 PF02897 Peptidase_S9_N: Proly 42.6 3.1E+02 0.0067 26.2 16.9 102 261-378 301-411 (414)
104 PF08450 SGL: SMP-30/Gluconola 42.2 2.3E+02 0.0051 24.6 21.7 65 75-142 14-78 (246)
105 PRK13684 Ycf48-like protein; P 42.1 2.9E+02 0.0063 25.7 18.0 28 294-328 270-297 (334)
106 cd00216 PQQ_DH Dehydrogenases 41.5 3.6E+02 0.0078 26.6 14.8 65 211-276 56-137 (488)
107 TIGR03075 PQQ_enz_alc_DH PQQ-d 41.5 3.1E+02 0.0066 27.5 10.8 87 212-300 65-171 (527)
108 TIGR03074 PQQ_membr_DH membran 40.3 4.7E+02 0.01 27.7 12.3 22 211-232 189-210 (764)
109 COG4946 Uncharacterized protei 39.5 3.8E+02 0.0082 26.3 13.6 69 211-282 230-308 (668)
110 PRK04922 tolB translocation pr 39.5 3.6E+02 0.0078 26.0 21.3 103 262-379 273-376 (433)
111 KOG2321 WD40 repeat protein [G 39.4 2.7E+02 0.006 27.9 9.4 78 107-189 180-261 (703)
112 PLN00033 photosystem II stabil 38.8 3.6E+02 0.0079 25.9 18.9 27 294-327 338-364 (398)
113 PRK05137 tolB translocation pr 37.8 3.8E+02 0.0083 25.9 21.9 102 262-378 271-373 (435)
114 PF13570 PQQ_3: PQQ-like domai 37.3 66 0.0014 18.9 3.5 24 110-133 17-40 (40)
115 cd01206 Homer Homer type EVH1 32.5 1.6E+02 0.0034 22.4 5.3 42 123-173 10-52 (111)
116 PF03088 Str_synth: Strictosid 31.6 66 0.0014 23.4 3.3 18 124-141 37-54 (89)
117 KOG2321 WD40 repeat protein [G 31.6 2.9E+02 0.0062 27.7 8.2 15 260-274 154-168 (703)
118 KOG0321 WD40 repeat-containing 30.6 2.3E+02 0.005 28.7 7.5 65 251-319 64-132 (720)
119 PRK04792 tolB translocation pr 29.9 5.3E+02 0.012 25.1 27.3 63 123-195 241-303 (448)
120 PF14870 PSII_BNR: Photosynthe 29.3 4.5E+02 0.0099 24.1 16.6 175 92-328 90-270 (302)
121 PF08268 FBA_3: F-box associat 28.4 1.3E+02 0.0028 23.4 4.8 31 350-380 5-37 (129)
122 KOG1332 Vesicle coat complex C 27.7 4.4E+02 0.0095 23.5 13.2 72 295-380 222-296 (299)
123 KOG4649 PQQ (pyrrolo-quinoline 27.3 4.6E+02 0.01 23.6 18.3 183 116-326 25-224 (354)
124 PF15408 PH_7: Pleckstrin homo 27.0 32 0.00069 24.6 0.9 25 39-63 76-100 (104)
125 KOG2445 Nuclear pore complex c 26.7 5.1E+02 0.011 23.9 11.4 34 365-401 203-236 (361)
126 PF01011 PQQ: PQQ enzyme repea 26.6 1.3E+02 0.0029 17.4 3.5 16 260-275 9-26 (38)
127 PF07762 DUF1618: Protein of u 26.1 3.1E+02 0.0067 21.2 6.7 43 289-331 47-98 (131)
128 KOG0310 Conserved WD40 repeat- 25.8 6.4E+02 0.014 24.7 14.3 89 130-233 8-97 (487)
129 PTZ00421 coronin; Provisional 25.7 6.7E+02 0.015 24.9 22.2 15 362-376 281-295 (493)
130 TIGR03075 PQQ_enz_alc_DH PQQ-d 25.6 6.9E+02 0.015 25.0 12.1 109 251-374 69-192 (527)
131 KOG0289 mRNA splicing factor [ 24.5 6.5E+02 0.014 24.4 11.4 116 70-198 356-473 (506)
132 PTZ00334 trans-sialidase; Prov 24.5 2.7E+02 0.0059 29.3 7.2 66 262-331 288-355 (780)
133 PF03022 MRJP: Major royal jel 23.8 4.9E+02 0.011 23.6 8.3 86 294-382 11-108 (287)
134 TIGR03032 conserved hypothetic 23.0 4E+02 0.0086 24.7 7.2 38 262-304 224-261 (335)
135 COG1520 FOG: WD40-like repeat 22.7 6.4E+02 0.014 23.6 11.1 92 262-374 79-174 (370)
136 KOG0649 WD40 repeat protein [G 22.5 5.6E+02 0.012 22.8 11.2 50 262-319 137-188 (325)
137 KOG2048 WD40 repeat protein [G 22.3 3.5E+02 0.0076 27.6 7.2 35 109-143 482-516 (691)
138 TIGR02658 TTQ_MADH_Hv methylam 21.5 6.9E+02 0.015 23.6 12.2 115 251-375 12-140 (352)
139 PF09910 DUF2139: Uncharacteri 20.8 4.4E+02 0.0096 24.2 6.9 62 261-330 173-244 (339)
140 TIGR03866 PQQ_ABC_repeats PQQ- 20.2 5.9E+02 0.013 22.2 24.0 62 114-188 42-105 (300)
No 1
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=99.92 E-value=1.3e-23 Score=185.70 Aligned_cols=222 Identities=18% Similarity=0.315 Sum_probs=151.9
Q ss_pred EEecCceEEEEeCCCeEEEEcCCCCCeeeCCCCCCCCCCCceeEEEEEecCCCCCceEEEEEecc---cCceEEEEEeCC
Q 038464 110 VAASGGLVCFRTASGKFIVSNPVTGSSRELPPLDADTENQSLHAIVMTTSSKNPSNYKLVLVYGE---LPKLSFKVYNSC 186 (404)
Q Consensus 110 ~~s~~Glv~~~~~~~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~g~~~~~~~~kv~~~~g~---~~~~~~~vy~~~ 186 (404)
+++||||+|+... ..++||||.|++|+.||+++.+....... ...+|+|+.+++|||+.+... .....+++|+++
T Consensus 1 ~~sCnGLlc~~~~-~~~~V~NP~T~~~~~LP~~~~~~~~~~~~-~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys~~ 78 (230)
T TIGR01640 1 VVPCDGLICFSYG-KRLVVWNPSTGQSRWLPTPKSRRSNKESD-TYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYTLG 78 (230)
T ss_pred CcccceEEEEecC-CcEEEECCCCCCEEecCCCCCcccccccc-eEEEeecccCCcEEEEEEEeecCCCCCccEEEEEeC
Confidence 3689999988754 78999999999999999876321111111 346799998899999998643 123589999999
Q ss_pred CCceeecccccccccccccccccCCccccCCeEEEeecCCceeeecccCCCcccccceeeecCCceEEEEeccCCeEEEE
Q 038464 187 LNCWEEETLLLSRKSEQALEVDSIDHHDDEDAVYFLSKAGNVVATNMQRSPSKQYSSVITSKDGEEIVYFLNSCGTIVAC 266 (404)
Q Consensus 187 ~~~W~~~~~~~p~~~~~~~~~~~~~~v~~~G~ly~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~i~~f 266 (404)
+++|+.+.. .+.... . ...+|++||.+||+...... . . ...|++|
T Consensus 79 ~~~Wr~~~~-~~~~~~----~-~~~~v~~~G~lyw~~~~~~~----------~-----------~--------~~~IvsF 123 (230)
T TIGR01640 79 SNSWRTIEC-SPPHHP----L-KSRGVCINGVLYYLAYTLKT----------N-----------P--------DYFIVSF 123 (230)
T ss_pred CCCcccccc-CCCCcc----c-cCCeEEECCEEEEEEEECCC----------C-----------C--------cEEEEEE
Confidence 999999875 222100 0 11378999999999753100 0 0 0159999
Q ss_pred ecCCCceee-ccccCCccc---cccceeEeeCCeEEEEEeeeccceeeEEEEEEeC-CCCCeEEeccCChhHHHHhccCc
Q 038464 267 NLTQKSFTE-YPRLLPVFS---EYSIDVVECRGELLVVVLSEFLESASLRVWRFDQ-DNGFWHQIAAMPPAMSHEFYGKK 341 (404)
Q Consensus 267 D~~~~~w~~-i~~~~p~~~---~~~~~lv~~~g~L~~v~~~~~~~~~~~~vw~l~~-~~~~W~~v~~~~~~~~~~~~~~~ 341 (404)
|+++|+|.. ++ +|... .....|++++|+|+++..... ...++||+|++ +...|+|..+++......+...
T Consensus 124 Dl~~E~f~~~i~--~P~~~~~~~~~~~L~~~~G~L~~v~~~~~--~~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~- 198 (230)
T TIGR01640 124 DVSSERFKEFIP--LPCGNSDSVDYLSLINYKGKLAVLKQKKD--TNNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDD- 198 (230)
T ss_pred EcccceEeeeee--cCccccccccceEEEEECCEEEEEEecCC--CCcEEEEEECCCCCCceeEEEEEcCcchhhhhhh-
Confidence 999999995 64 34321 123579999999999876431 24599999986 4567999998874322223221
Q ss_pred ceEEEEecCCEEEEEEecCCCceEEEEECCCC
Q 038464 342 VDINCVAAGHQIFICFNSAELFSYVLCDLVTN 373 (404)
Q Consensus 342 ~~~~~~~~~~~i~v~~~~~~~~~~~~yd~~~~ 373 (404)
..+.++..++.|+++........++.||++++
T Consensus 199 ~~~~~~~~~g~I~~~~~~~~~~~~~~y~~~~~ 230 (230)
T TIGR01640 199 NFLSGFTDKGEIVLCCEDENPFYIFYYNVGEN 230 (230)
T ss_pred eeEeEEeeCCEEEEEeCCCCceEEEEEeccCC
Confidence 34566778899987655321234999999875
No 2
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.92 E-value=1.3e-23 Score=206.39 Aligned_cols=241 Identities=17% Similarity=0.210 Sum_probs=186.5
Q ss_pred eeeeecCCCceeeccCCCCCCCeeEEEecCceEEEEeC-C------CeEEEEcCCCCCeeeCCCCCCCCCCCceeEEEEE
Q 038464 85 SIVFDSAEKTWKELNFPNSSPDSIPVAASGGLVCFRTA-S------GKFIVSNPVTGSSRELPPLDADTENQSLHAIVMT 157 (404)
Q Consensus 85 ~~~~d~~~~~w~~l~~p~~~~~~~~~~s~~Glv~~~~~-~------~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~ 157 (404)
.-.|||.+++|..+..++.++....+++.+|.||+.|+ . +.+++|||.+++|..+|+|. .+|..++++.+
T Consensus 303 ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~---~~R~~~~v~~l 379 (571)
T KOG4441|consen 303 VECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMN---TKRSDFGVAVL 379 (571)
T ss_pred eEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCcc---CccccceeEEE
Confidence 34899999999999877766666678899999999987 2 46899999999999999999 56667777776
Q ss_pred ecCCCCCceEEEEEecccC---ceEEEEEeCCCCceeeccccccc-ccccccccccCCccccCCeEEEeecCCceeeecc
Q 038464 158 TSSKNPSNYKLVLVYGELP---KLSFKVYNSCLNCWEEETLLLSR-KSEQALEVDSIDHHDDEDAVYFLSKAGNVVATNM 233 (404)
Q Consensus 158 g~~~~~~~~kv~~~~g~~~---~~~~~vy~~~~~~W~~~~~~~p~-~~~~~~~~~~~~~v~~~G~ly~~~~~~~~~~~~~ 233 (404)
.++||++||... ...+|.||+.+++|..+++ ++. +..+ +.+.++|.+|.+||..+...
T Consensus 380 -------~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~-m~~~r~~~-------gv~~~~g~iYi~GG~~~~~~--- 441 (571)
T KOG4441|consen 380 -------DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-MLTRRSGH-------GVAVLGGKLYIIGGGDGSSN--- 441 (571)
T ss_pred -------CCEEEEEeccccccccccEEEecCCCCcccccCC-CCcceeee-------EEEEECCEEEEEcCcCCCcc---
Confidence 589999998642 3579999999999999998 554 2222 56899999999998543210
Q ss_pred cCCCcccccceeeecCCceEEEEeccCCeEEEEecCCCceeeccccCCccccccceeEeeCCeEEEEEeeeccceeeEEE
Q 038464 234 QRSPSKQYSSVITSKDGEEIVYFLNSCGTIVACNLTQKSFTEYPRLLPVFSEYSIDVVECRGELLVVVLSEFLESASLRV 313 (404)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~y~~~~~~~i~~fD~~~~~w~~i~~~~p~~~~~~~~lv~~~g~L~~v~~~~~~~~~~~~v 313 (404)
.-+.+.+||+.+++|+.++ +|+... ..+.++..+|+||++||.+. ....-.|
T Consensus 442 -------------------------~l~sve~YDP~t~~W~~~~-~M~~~R-~~~g~a~~~~~iYvvGG~~~-~~~~~~V 493 (571)
T KOG4441|consen 442 -------------------------CLNSVECYDPETNTWTLIA-PMNTRR-SGFGVAVLNGKIYVVGGFDG-TSALSSV 493 (571)
T ss_pred -------------------------ccceEEEEcCCCCceeecC-Cccccc-ccceEEEECCEEEEECCccC-CCccceE
Confidence 0137999999999999985 455433 34678999999999999763 2222336
Q ss_pred EEEeCCCCCeEEeccCChhHHHHhccCcceEEEEecCCEEEEEEecC---CCceEEEEECCCCceEECCCCCC
Q 038464 314 WRFDQDNGFWHQIAAMPPAMSHEFYGKKVDINCVAAGHQIFICFNSA---ELFSYVLCDLVTNEWVELPKCSM 383 (404)
Q Consensus 314 w~l~~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~---~~~~~~~yd~~~~~w~~~~~~~~ 383 (404)
-.+|+.+++|+.++.|+. .+....++..++.+|+..+.. ....+.+||+.+++|+..+. |.
T Consensus 494 E~ydp~~~~W~~v~~m~~--------~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~~~-~~ 557 (571)
T KOG4441|consen 494 ERYDPETNQWTMVAPMTS--------PRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDTWTEVTE-PE 557 (571)
T ss_pred EEEcCCCCceeEcccCcc--------ccccccEEEECCEEEEEecccCccccceeEEcCCCCCceeeCCC-cc
Confidence 667999999999998873 333455677899999765432 24689999999999999988 63
No 3
>PHA02713 hypothetical protein; Provisional
Probab=99.92 E-value=1.7e-23 Score=206.58 Aligned_cols=258 Identities=11% Similarity=0.150 Sum_probs=179.1
Q ss_pred eeeeecCCCceeeccCCCCCCCeeEEEecCceEEEEeCC-------CeEEEEcCCCCCeeeCCCCCCCCCCCceeEEEEE
Q 038464 85 SIVFDSAEKTWKELNFPNSSPDSIPVAASGGLVCFRTAS-------GKFIVSNPVTGSSRELPPLDADTENQSLHAIVMT 157 (404)
Q Consensus 85 ~~~~d~~~~~w~~l~~p~~~~~~~~~~s~~Glv~~~~~~-------~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~ 157 (404)
...||+.+++|..++..+.+...+.+++.+|.||+.|+. +.+++|||.+++|..+|+|+. .+..++++.+
T Consensus 274 v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~---~R~~~~~~~~ 350 (557)
T PHA02713 274 ILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIK---NRCRFSLAVI 350 (557)
T ss_pred EEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcc---hhhceeEEEE
Confidence 458999999999987766555555678889999998872 358899999999999999993 4555666665
Q ss_pred ecCCCCCceEEEEEecccC---ceEEEEEeCCCCceeecccccccccccccccccCCccccCCeEEEeecCCceeeeccc
Q 038464 158 TSSKNPSNYKLVLVYGELP---KLSFKVYNSCLNCWEEETLLLSRKSEQALEVDSIDHHDDEDAVYFLSKAGNVVATNMQ 234 (404)
Q Consensus 158 g~~~~~~~~kv~~~~g~~~---~~~~~vy~~~~~~W~~~~~~~p~~~~~~~~~~~~~~v~~~G~ly~~~~~~~~~~~~~~ 234 (404)
+.+||++||... ...+++||+.+++|+.+++ +|..... ...+.++|++|++||..+...+...
T Consensus 351 -------~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~-mp~~r~~------~~~~~~~g~IYviGG~~~~~~~~~~ 416 (557)
T PHA02713 351 -------DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPD-MPIALSS------YGMCVLDQYIYIIGGRTEHIDYTSV 416 (557)
T ss_pred -------CCEEEEECCcCCCCCCceEEEEECCCCeEEECCC-CCccccc------ccEEEECCEEEEEeCCCcccccccc
Confidence 478999998532 3579999999999999998 6652221 1457889999999985321000000
Q ss_pred CCCcccccceeeecCCceEEEEeccCCeEEEEecCCCceeeccccCCccccccceeEeeCCeEEEEEeeeccceeeEEEE
Q 038464 235 RSPSKQYSSVITSKDGEEIVYFLNSCGTIVACNLTQKSFTEYPRLLPVFSEYSIDVVECRGELLVVVLSEFLESASLRVW 314 (404)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~y~~~~~~~i~~fD~~~~~w~~i~~~~p~~~~~~~~lv~~~g~L~~v~~~~~~~~~~~~vw 314 (404)
..+.. +...++. ...+.+.+||+++++|+.++ +++... ..+.++..+|+||++||........-.|.
T Consensus 417 ----~~~~~-~~~~~~~------~~~~~ve~YDP~td~W~~v~-~m~~~r-~~~~~~~~~~~IYv~GG~~~~~~~~~~ve 483 (557)
T PHA02713 417 ----HHMNS-IDMEEDT------HSSNKVIRYDTVNNIWETLP-NFWTGT-IRPGVVSHKDDIYVVCDIKDEKNVKTCIF 483 (557)
T ss_pred ----ccccc-ccccccc------cccceEEEECCCCCeEeecC-CCCccc-ccCcEEEECCEEEEEeCCCCCCccceeEE
Confidence 00000 0000000 00236999999999999885 455433 34678899999999998642111112367
Q ss_pred EEeCCC-CCeEEeccCChhHHHHhccCcceEEEEecCCEEEEEEecCCCceEEEEECCCCceEECCC
Q 038464 315 RFDQDN-GFWHQIAAMPPAMSHEFYGKKVDINCVAAGHQIFICFNSAELFSYVLCDLVTNEWVELPK 380 (404)
Q Consensus 315 ~l~~~~-~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~yd~~~~~w~~~~~ 380 (404)
++|+++ ++|+.+.+||.. +....++..+++||+.++-.+...+.+||+.+++|+.+.+
T Consensus 484 ~Ydp~~~~~W~~~~~m~~~--------r~~~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~ 542 (557)
T PHA02713 484 RYNTNTYNGWELITTTESR--------LSALHTILHDNTIMMLHCYESYMLQDTFNVYTYEWNHICH 542 (557)
T ss_pred EecCCCCCCeeEccccCcc--------cccceeEEECCEEEEEeeecceeehhhcCcccccccchhh
Confidence 779988 799999999842 2234566789999986543333478999999999988765
No 4
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.84 E-value=3.2e-19 Score=175.58 Aligned_cols=214 Identities=15% Similarity=0.170 Sum_probs=158.9
Q ss_pred ecCceEEEEeC-------CCeEEEEcCCCCCeeeCCCCCCCCCCCceeEEEEEecCCCCCceEEEEEeccc-C---ceEE
Q 038464 112 ASGGLVCFRTA-------SGKFIVSNPVTGSSRELPPLDADTENQSLHAIVMTTSSKNPSNYKLVLVYGEL-P---KLSF 180 (404)
Q Consensus 112 s~~Glv~~~~~-------~~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~g~~~~~~~~kv~~~~g~~-~---~~~~ 180 (404)
+..+.+++.++ ...+..+||.+++|..+++|+. ++..++++.+ +.+||++||.. . -..+
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~---~r~~~~~~~~-------~~~lYv~GG~~~~~~~l~~v 351 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPS---PRCRVGVAVL-------NGKLYVVGGYDSGSDRLSSV 351 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCc---ccccccEEEE-------CCEEEEEccccCCCcccceE
Confidence 45566666665 2457899999999999999994 4445666666 36899999875 2 2579
Q ss_pred EEEeCCCCceeeccccccc-ccccccccccCCccccCCeEEEeecCCceeeecccCCCcccccceeeecCCceEEEEecc
Q 038464 181 KVYNSCLNCWEEETLLLSR-KSEQALEVDSIDHHDDEDAVYFLSKAGNVVATNMQRSPSKQYSSVITSKDGEEIVYFLNS 259 (404)
Q Consensus 181 ~vy~~~~~~W~~~~~~~p~-~~~~~~~~~~~~~v~~~G~ly~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~ 259 (404)
++||+.++.|+.+++ |.. +... +.+.++|.+|.+||..+...
T Consensus 352 e~YD~~~~~W~~~a~-M~~~R~~~-------~v~~l~g~iYavGG~dg~~~----------------------------- 394 (571)
T KOG4441|consen 352 ERYDPRTNQWTPVAP-MNTKRSDF-------GVAVLDGKLYAVGGFDGEKS----------------------------- 394 (571)
T ss_pred EEecCCCCceeccCC-ccCccccc-------eeEEECCEEEEEeccccccc-----------------------------
Confidence 999999999999988 554 3222 56899999999999753211
Q ss_pred CCeEEEEecCCCceeeccccCCccccccceeEeeCCeEEEEEeeeccceeeEEEEEEeCCCCCeEEeccCChhHHHHhcc
Q 038464 260 CGTIVACNLTQKSFTEYPRLLPVFSEYSIDVVECRGELLVVVLSEFLESASLRVWRFDQDNGFWHQIAAMPPAMSHEFYG 339 (404)
Q Consensus 260 ~~~i~~fD~~~~~w~~i~~~~p~~~~~~~~lv~~~g~L~~v~~~~~~~~~~~~vw~l~~~~~~W~~v~~~~~~~~~~~~~ 339 (404)
.+.+.+||+.+++|+.++ +++. ....+..+..+|+||++||........-.|-.+|+.+++|+.+++|+.
T Consensus 395 l~svE~YDp~~~~W~~va-~m~~-~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~-------- 464 (571)
T KOG4441|consen 395 LNSVECYDPVTNKWTPVA-PMLT-RRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNT-------- 464 (571)
T ss_pred cccEEEecCCCCcccccC-CCCc-ceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccc--------
Confidence 137999999999999985 3544 224578899999999999975322233446666999999999999983
Q ss_pred CcceEEEEecCCEEEEEEecCC---CceEEEEECCCCceEECCCCC
Q 038464 340 KKVDINCVAAGHQIFICFNSAE---LFSYVLCDLVTNEWVELPKCS 382 (404)
Q Consensus 340 ~~~~~~~~~~~~~i~v~~~~~~---~~~~~~yd~~~~~w~~~~~~~ 382 (404)
.+..+.++..++.||++++..+ ...+..||+++++|+.+..+.
T Consensus 465 ~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~ 510 (571)
T KOG4441|consen 465 RRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMT 510 (571)
T ss_pred ccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCc
Confidence 3334456678999997643322 356899999999999997665
No 5
>PHA03098 kelch-like protein; Provisional
Probab=99.83 E-value=2e-18 Score=171.57 Aligned_cols=241 Identities=12% Similarity=0.147 Sum_probs=167.3
Q ss_pred eeeecCCCceeeccCCCCCCCeeEEEecCceEEEEeC-------CCeEEEEcCCCCCeeeCCCCCCCCCCCceeEEEEEe
Q 038464 86 IVFDSAEKTWKELNFPNSSPDSIPVAASGGLVCFRTA-------SGKFIVSNPVTGSSRELPPLDADTENQSLHAIVMTT 158 (404)
Q Consensus 86 ~~~d~~~~~w~~l~~p~~~~~~~~~~s~~Glv~~~~~-------~~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~g 158 (404)
..|++..++|..++..+... .+..++.++.+++.++ .+.++.|||.+++|..+|+|+. .+..++++.+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~---~R~~~~~~~~- 341 (534)
T PHA03098 267 ITNYSPLSEINTIIDIHYVY-CFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIY---PRKNPGVTVF- 341 (534)
T ss_pred eecchhhhhcccccCccccc-cceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCc---ccccceEEEE-
Confidence 35677777888775443222 2346677888888876 2368999999999999999984 3444555555
Q ss_pred cCCCCCceEEEEEecccC---ceEEEEEeCCCCceeecccccccccccccccccCCccccCCeEEEeecCCceeeecccC
Q 038464 159 SSKNPSNYKLVLVYGELP---KLSFKVYNSCLNCWEEETLLLSRKSEQALEVDSIDHHDDEDAVYFLSKAGNVVATNMQR 235 (404)
Q Consensus 159 ~~~~~~~~kv~~~~g~~~---~~~~~vy~~~~~~W~~~~~~~p~~~~~~~~~~~~~~v~~~G~ly~~~~~~~~~~~~~~~ 235 (404)
+.+|+++||... ...+++||+.+++|+..+. +|..... ...+.++|.+|++||....
T Consensus 342 ------~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~-lp~~r~~------~~~~~~~~~iYv~GG~~~~------- 401 (534)
T PHA03098 342 ------NNRIYVIGGIYNSISLNTVESWKPGESKWREEPP-LIFPRYN------PCVVNVNNLIYVIGGISKN------- 401 (534)
T ss_pred ------CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCC-cCcCCcc------ceEEEECCEEEEECCcCCC-------
Confidence 467999988632 3579999999999999887 6642111 1357789999999884210
Q ss_pred CCcccccceeeecCCceEEEEeccCCeEEEEecCCCceeeccccCCccccccceeEeeCCeEEEEEeeeccce--eeEEE
Q 038464 236 SPSKQYSSVITSKDGEEIVYFLNSCGTIVACNLTQKSFTEYPRLLPVFSEYSIDVVECRGELLVVVLSEFLES--ASLRV 313 (404)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~y~~~~~~~i~~fD~~~~~w~~i~~~~p~~~~~~~~lv~~~g~L~~v~~~~~~~~--~~~~v 313 (404)
. . ..+.+..||+.+++|+.++ ++|... ..+..+..+|+||++||...... ..-.+
T Consensus 402 ---~-----------~-------~~~~v~~yd~~t~~W~~~~-~~p~~r-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v 458 (534)
T PHA03098 402 ---D-----------E-------LLKTVECFSLNTNKWSKGS-PLPISH-YGGCAIYHDGKIYVIGGISYIDNIKVYNIV 458 (534)
T ss_pred ---C-----------c-------ccceEEEEeCCCCeeeecC-CCCccc-cCceEEEECCEEEEECCccCCCCCcccceE
Confidence 0 0 0136899999999999885 355433 23556778999999998642111 12338
Q ss_pred EEEeCCCCCeEEeccCChhHHHHhccCcceEEEEecCCEEEEEEecCC---CceEEEEECCCCceEECCCCC
Q 038464 314 WRFDQDNGFWHQIAAMPPAMSHEFYGKKVDINCVAAGHQIFICFNSAE---LFSYVLCDLVTNEWVELPKCS 382 (404)
Q Consensus 314 w~l~~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~~---~~~~~~yd~~~~~w~~~~~~~ 382 (404)
+.+|+.+++|+++..++.+ +....++..++.|||+++... ...+.+||+++++|+.++..|
T Consensus 459 ~~yd~~~~~W~~~~~~~~~--------r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p 522 (534)
T PHA03098 459 ESYNPVTNKWTELSSLNFP--------RINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCKFP 522 (534)
T ss_pred EEecCCCCceeeCCCCCcc--------cccceEEEECCEEEEEcCCcCCcccceeEEEeCCCCEEEecCCCc
Confidence 8889999999999988732 111223445889987643211 357899999999999998877
No 6
>PHA02790 Kelch-like protein; Provisional
Probab=99.82 E-value=2.1e-18 Score=168.03 Aligned_cols=202 Identities=12% Similarity=0.093 Sum_probs=146.8
Q ss_pred EecCceEEEEeC------CCeEEEEcCCCCCeeeCCCCCCCCCCCceeEEEEEecCCCCCceEEEEEecccCceEEEEEe
Q 038464 111 AASGGLVCFRTA------SGKFIVSNPVTGSSRELPPLDADTENQSLHAIVMTTSSKNPSNYKLVLVYGELPKLSFKVYN 184 (404)
Q Consensus 111 ~s~~Glv~~~~~------~~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~g~~~~~~~~kv~~~~g~~~~~~~~vy~ 184 (404)
+..++.+++.|+ .+.++.|||.+++|..+|+|+. .+..++.+.+ +.+||++||......++.||
T Consensus 268 ~~~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~---~r~~~~~v~~-------~~~iYviGG~~~~~sve~yd 337 (480)
T PHA02790 268 THVGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNS---PRLYASGVPA-------NNKLYVVGGLPNPTSVERWF 337 (480)
T ss_pred EEECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCc---hhhcceEEEE-------CCEEEEECCcCCCCceEEEE
Confidence 446788888876 2467899999999999999984 4444555444 47899998864446799999
Q ss_pred CCCCceeecccccccccccccccccCCccccCCeEEEeecCCceeeecccCCCcccccceeeecCCceEEEEeccCCeEE
Q 038464 185 SCLNCWEEETLLLSRKSEQALEVDSIDHHDDEDAVYFLSKAGNVVATNMQRSPSKQYSSVITSKDGEEIVYFLNSCGTIV 264 (404)
Q Consensus 185 ~~~~~W~~~~~~~p~~~~~~~~~~~~~~v~~~G~ly~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~i~ 264 (404)
+.+++|..+++ +|..... ...+.++|+||++||.... ...+.
T Consensus 338 p~~n~W~~~~~-l~~~r~~------~~~~~~~g~IYviGG~~~~-------------------------------~~~ve 379 (480)
T PHA02790 338 HGDAAWVNMPS-LLKPRCN------PAVASINNVIYVIGGHSET-------------------------------DTTTE 379 (480)
T ss_pred CCCCeEEECCC-CCCCCcc------cEEEEECCEEEEecCcCCC-------------------------------CccEE
Confidence 99999999988 7652111 1457899999999884210 02588
Q ss_pred EEecCCCceeeccccCCccccccceeEeeCCeEEEEEeeeccceeeEEEEEEeCCCCCeEEeccCChhHHHHhccCcceE
Q 038464 265 ACNLTQKSFTEYPRLLPVFSEYSIDVVECRGELLVVVLSEFLESASLRVWRFDQDNGFWHQIAAMPPAMSHEFYGKKVDI 344 (404)
Q Consensus 265 ~fD~~~~~w~~i~~~~p~~~~~~~~lv~~~g~L~~v~~~~~~~~~~~~vw~l~~~~~~W~~v~~~~~~~~~~~~~~~~~~ 344 (404)
+||+++++|+.++ ++|... ..+..+..+|+||++|+. .++ +++.+++|+.+.+|+.+ +...
T Consensus 380 ~ydp~~~~W~~~~-~m~~~r-~~~~~~~~~~~IYv~GG~-------~e~--ydp~~~~W~~~~~m~~~--------r~~~ 440 (480)
T PHA02790 380 YLLPNHDQWQFGP-STYYPH-YKSCALVFGRRLFLVGRN-------AEF--YCESSNTWTLIDDPIYP--------RDNP 440 (480)
T ss_pred EEeCCCCEEEeCC-CCCCcc-ccceEEEECCEEEEECCc-------eEE--ecCCCCcEeEcCCCCCC--------cccc
Confidence 8999999999985 344332 235677899999999863 234 47778899999999732 2233
Q ss_pred EEEecCCEEEEEEecC---CCceEEEEECCCCceEECC
Q 038464 345 NCVAAGHQIFICFNSA---ELFSYVLCDLVTNEWVELP 379 (404)
Q Consensus 345 ~~~~~~~~i~v~~~~~---~~~~~~~yd~~~~~w~~~~ 379 (404)
.++..+|+||++++.. ....+.+||+++++|+...
T Consensus 441 ~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W~~~~ 478 (480)
T PHA02790 441 ELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYSWNIWD 478 (480)
T ss_pred EEEEECCEEEEECCcCCCcccceEEEEECCCCeEEecC
Confidence 4567799999875421 1257899999999998654
No 7
>PHA02713 hypothetical protein; Provisional
Probab=99.82 E-value=1.9e-18 Score=170.78 Aligned_cols=202 Identities=12% Similarity=0.111 Sum_probs=145.9
Q ss_pred eEEEEcCCCCCeeeCCCCCCCCCCCceeEEEEEecCCCCCceEEEEEeccc-C---ceEEEEEeCCCCceeecccccccc
Q 038464 125 KFIVSNPVTGSSRELPPLDADTENQSLHAIVMTTSSKNPSNYKLVLVYGEL-P---KLSFKVYNSCLNCWEEETLLLSRK 200 (404)
Q Consensus 125 ~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~g~~~~~~~~kv~~~~g~~-~---~~~~~vy~~~~~~W~~~~~~~p~~ 200 (404)
.+..|||.+++|..+++|+. .+..++++.+ +.+||++||.. . ...++.||+.++.|..+++ +|..
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~---~r~~~~~a~l-------~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~-m~~~ 341 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPN---HIINYASAIV-------DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPP-MIKN 341 (557)
T ss_pred CEEEEeCCCCeEEECCCCCc---cccceEEEEE-------CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCC-Ccch
Confidence 57899999999999999984 3444555555 46799998852 1 2579999999999999988 6642
Q ss_pred cccccccccCCccccCCeEEEeecCCceeeecccCCCcccccceeeecCCceEEEEeccCCeEEEEecCCCceeeccccC
Q 038464 201 SEQALEVDSIDHHDDEDAVYFLSKAGNVVATNMQRSPSKQYSSVITSKDGEEIVYFLNSCGTIVACNLTQKSFTEYPRLL 280 (404)
Q Consensus 201 ~~~~~~~~~~~~v~~~G~ly~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~i~~fD~~~~~w~~i~~~~ 280 (404)
... ...+.++|++|++||..+.. ..+.+.+||+.+++|+.++ ++
T Consensus 342 R~~------~~~~~~~g~IYviGG~~~~~-----------------------------~~~sve~Ydp~~~~W~~~~-~m 385 (557)
T PHA02713 342 RCR------FSLAVIDDTIYAIGGQNGTN-----------------------------VERTIECYTMGDDKWKMLP-DM 385 (557)
T ss_pred hhc------eeEEEECCEEEEECCcCCCC-----------------------------CCceEEEEECCCCeEEECC-CC
Confidence 111 14578999999999853100 0126999999999999985 46
Q ss_pred CccccccceeEeeCCeEEEEEeeeccc-----------------eeeEEEEEEeCCCCCeEEeccCChhHHHHhccCcce
Q 038464 281 PVFSEYSIDVVECRGELLVVVLSEFLE-----------------SASLRVWRFDQDNGFWHQIAAMPPAMSHEFYGKKVD 343 (404)
Q Consensus 281 p~~~~~~~~lv~~~g~L~~v~~~~~~~-----------------~~~~~vw~l~~~~~~W~~v~~~~~~~~~~~~~~~~~ 343 (404)
|... ..+..+.++|+||++||..... ...-.|..+|+.+++|+.+..|+.. +..
T Consensus 386 p~~r-~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~--------r~~ 456 (557)
T PHA02713 386 PIAL-SSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTG--------TIR 456 (557)
T ss_pred Cccc-ccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcc--------ccc
Confidence 6543 3456788999999999864110 0123578889999999999999742 222
Q ss_pred EEEEecCCEEEEEEecCC----CceEEEEECCC-CceEECCCCC
Q 038464 344 INCVAAGHQIFICFNSAE----LFSYVLCDLVT-NEWVELPKCS 382 (404)
Q Consensus 344 ~~~~~~~~~i~v~~~~~~----~~~~~~yd~~~-~~w~~~~~~~ 382 (404)
..++..+++||++++..+ ...+.+||+++ ++|+.++++|
T Consensus 457 ~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~ 500 (557)
T PHA02713 457 PGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTE 500 (557)
T ss_pred CcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccC
Confidence 345677899998753211 13568999999 8999999887
No 8
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.81 E-value=1.9e-17 Score=155.57 Aligned_cols=254 Identities=11% Similarity=0.093 Sum_probs=153.0
Q ss_pred eEEEecCceEEEEeC--CCeEEEEcC--CCCCeeeCCCCCCCCCCCceeEEEEEecCCCCCceEEEEEecccC-------
Q 038464 108 IPVAASGGLVCFRTA--SGKFIVSNP--VTGSSRELPPLDADTENQSLHAIVMTTSSKNPSNYKLVLVYGELP------- 176 (404)
Q Consensus 108 ~~~~s~~Glv~~~~~--~~~~~v~NP--~t~~w~~lP~~~~~~~~~~~~~~~~~g~~~~~~~~kv~~~~g~~~------- 176 (404)
...++.++.|++.++ .+.++++|+ .+++|..+|+|+.. .+..++++.+ +.+||++||...
T Consensus 11 ~~~~~~~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~--~R~~~~~~~~-------~~~iYv~GG~~~~~~~~~~ 81 (346)
T TIGR03547 11 GTGAIIGDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGG--PRNQAVAAAI-------DGKLYVFGGIGKANSEGSP 81 (346)
T ss_pred ceEEEECCEEEEEccccCCeeEEEECCCCCCCceECCCCCCC--CcccceEEEE-------CCEEEEEeCCCCCCCCCcc
Confidence 345677889999876 467888885 67899999999731 3344555555 468999997521
Q ss_pred --ceEEEEEeCCCCceeecccccccccccccccccCCcc-ccCCeEEEeecCCce---------eeecccCCCcccccce
Q 038464 177 --KLSFKVYNSCLNCWEEETLLLSRKSEQALEVDSIDHH-DDEDAVYFLSKAGNV---------VATNMQRSPSKQYSSV 244 (404)
Q Consensus 177 --~~~~~vy~~~~~~W~~~~~~~p~~~~~~~~~~~~~~v-~~~G~ly~~~~~~~~---------~~~~~~~~~~~~~~~~ 244 (404)
...+++||+.+++|+.++..+|+.... ...+ .++|+||++||.... ..+|.....+. ..
T Consensus 82 ~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~------~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~---~~ 152 (346)
T TIGR03547 82 QVFDDVYRYDPKKNSWQKLDTRSPVGLLG------ASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKD---KL 152 (346)
T ss_pred eecccEEEEECCCCEEecCCCCCCCcccc------eeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhh---hh
Confidence 246999999999999987424442111 0123 589999999985321 00110000000 00
Q ss_pred eeecCCce-EEEEeccCCeEEEEecCCCceeeccccCCccccccceeEeeCCeEEEEEeeeccceeeEEE--EEEeCCCC
Q 038464 245 ITSKDGEE-IVYFLNSCGTIVACNLTQKSFTEYPRLLPVFSEYSIDVVECRGELLVVVLSEFLESASLRV--WRFDQDNG 321 (404)
Q Consensus 245 ~~~~~~~~-~~y~~~~~~~i~~fD~~~~~w~~i~~~~p~~~~~~~~lv~~~g~L~~v~~~~~~~~~~~~v--w~l~~~~~ 321 (404)
+....+.. .-| ...+.+.+||+++++|+.++ ++|......+.++..+|+||++++.........++ +.++++++
T Consensus 153 ~~~~~~~~~~~~--~~~~~v~~YDp~t~~W~~~~-~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~ 229 (346)
T TIGR03547 153 IAAYFSQPPEDY--FWNKNVLSYDPSTNQWRNLG-ENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKL 229 (346)
T ss_pred HHHHhCCChhHc--CccceEEEEECCCCceeECc-cCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCc
Confidence 00000000 000 00147999999999999985 45532223456788899999999864222223344 44555777
Q ss_pred CeEEeccCChhHHHHhccCcceEEEEecCCEEEEEEecCC--------------------CceEEEEECCCCceEECCCC
Q 038464 322 FWHQIAAMPPAMSHEFYGKKVDINCVAAGHQIFICFNSAE--------------------LFSYVLCDLVTNEWVELPKC 381 (404)
Q Consensus 322 ~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~~--------------------~~~~~~yd~~~~~w~~~~~~ 381 (404)
+|+++..||.+-.. .........++..+++|||+..... ...+.+||+++++|+.++++
T Consensus 230 ~W~~~~~m~~~r~~-~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~l 308 (346)
T TIGR03547 230 EWNKLPPLPPPKSS-SQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKL 308 (346)
T ss_pred eeeecCCCCCCCCC-ccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCC
Confidence 99999999742100 0000012234457899998654210 02578999999999999988
Q ss_pred CC
Q 038464 382 SM 383 (404)
Q Consensus 382 ~~ 383 (404)
|.
T Consensus 309 p~ 310 (346)
T TIGR03547 309 PQ 310 (346)
T ss_pred CC
Confidence 73
No 9
>PLN02153 epithiospecifier protein
Probab=99.80 E-value=3.7e-17 Score=153.13 Aligned_cols=247 Identities=17% Similarity=0.122 Sum_probs=157.5
Q ss_pred CCCceeeccC----CCCCCCeeEEEecCceEEEEeC--------CCeEEEEcCCCCCeeeCCCCCC-CCCCCceeEEEEE
Q 038464 91 AEKTWKELNF----PNSSPDSIPVAASGGLVCFRTA--------SGKFIVSNPVTGSSRELPPLDA-DTENQSLHAIVMT 157 (404)
Q Consensus 91 ~~~~w~~l~~----p~~~~~~~~~~s~~Glv~~~~~--------~~~~~v~NP~t~~w~~lP~~~~-~~~~~~~~~~~~~ 157 (404)
...+|.+++. .+.++..+.+++.++.|++.++ .+.+++||+.+++|..++++.. ++.....++++.+
T Consensus 5 ~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~ 84 (341)
T PLN02153 5 LQGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV 84 (341)
T ss_pred cCCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE
Confidence 3456887755 2334444557777889998876 1468999999999999988752 2211223444444
Q ss_pred ecCCCCCceEEEEEecccC---ceEEEEEeCCCCceeeccccc-----cc-ccccccccccCCccccCCeEEEeecCCce
Q 038464 158 TSSKNPSNYKLVLVYGELP---KLSFKVYNSCLNCWEEETLLL-----SR-KSEQALEVDSIDHHDDEDAVYFLSKAGNV 228 (404)
Q Consensus 158 g~~~~~~~~kv~~~~g~~~---~~~~~vy~~~~~~W~~~~~~~-----p~-~~~~~~~~~~~~~v~~~G~ly~~~~~~~~ 228 (404)
+.+||++||... ...+++||+.+++|+.++. + |. +..+ ..+..++++|++||...-
T Consensus 85 -------~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~-~~~~~~p~~R~~~-------~~~~~~~~iyv~GG~~~~ 149 (341)
T PLN02153 85 -------GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTK-LDEEGGPEARTFH-------SMASDENHVYVFGGVSKG 149 (341)
T ss_pred -------CCEEEEECCCCCCCccCcEEEEECCCCEEEEecc-CCCCCCCCCceee-------EEEEECCEEEEECCccCC
Confidence 367999987522 2479999999999998876 4 22 1111 347789999999885310
Q ss_pred eeecccCCCcccccceeeecCCceEEEEeccCCeEEEEecCCCceeeccccC-CccccccceeEeeCCeEEEEEeeecc-
Q 038464 229 VATNMQRSPSKQYSSVITSKDGEEIVYFLNSCGTIVACNLTQKSFTEYPRLL-PVFSEYSIDVVECRGELLVVVLSEFL- 306 (404)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~i~~fD~~~~~w~~i~~~~-p~~~~~~~~lv~~~g~L~~v~~~~~~- 306 (404)
.. ... ....+.+..||+++++|..++..- +......+.++..+|+||++++....
T Consensus 150 ~~----------~~~-------------~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~ 206 (341)
T PLN02153 150 GL----------MKT-------------PERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSI 206 (341)
T ss_pred Cc----------cCC-------------CcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEecccccc
Confidence 00 000 000125889999999999885421 11111235667889999999875310
Q ss_pred ------ceeeEEEEEEeCCCCCeEEeccCChhHHHHhccCcceEEEEecCCEEEEEEecC------------CCceEEEE
Q 038464 307 ------ESASLRVWRFDQDNGFWHQIAAMPPAMSHEFYGKKVDINCVAAGHQIFICFNSA------------ELFSYVLC 368 (404)
Q Consensus 307 ------~~~~~~vw~l~~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~------------~~~~~~~y 368 (404)
....-+|+.+|..+++|+++..++.. ...+....++..+++|||+.... ....+++|
T Consensus 207 ~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~-----P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~ 281 (341)
T PLN02153 207 LPGGKSDYESNAVQFFDPASGKWTEVETTGAK-----PSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYAL 281 (341)
T ss_pred ccCCccceecCceEEEEcCCCcEEeccccCCC-----CCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEE
Confidence 11123588889988999998754210 01122334556688998764421 01378999
Q ss_pred ECCCCceEECCC
Q 038464 369 DLVTNEWVELPK 380 (404)
Q Consensus 369 d~~~~~w~~~~~ 380 (404)
|+++++|+.++.
T Consensus 282 d~~~~~W~~~~~ 293 (341)
T PLN02153 282 DTETLVWEKLGE 293 (341)
T ss_pred EcCccEEEeccC
Confidence 999999998863
No 10
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.78 E-value=5.4e-17 Score=153.80 Aligned_cols=264 Identities=11% Similarity=0.068 Sum_probs=154.8
Q ss_pred eeccCCCCCCCeeEEEecCceEEEEeC--CCeEEEEcCC--CCCeeeCCCCCCCCCCCceeEEEEEecCCCCCceEEEEE
Q 038464 96 KELNFPNSSPDSIPVAASGGLVCFRTA--SGKFIVSNPV--TGSSRELPPLDADTENQSLHAIVMTTSSKNPSNYKLVLV 171 (404)
Q Consensus 96 ~~l~~p~~~~~~~~~~s~~Glv~~~~~--~~~~~v~NP~--t~~w~~lP~~~~~~~~~~~~~~~~~g~~~~~~~~kv~~~ 171 (404)
..||..|.+......++.++.|++.++ ...++++|+. +++|..+++++.. .+..++++.+ +.+||++
T Consensus 20 ~~l~~lP~~~~~~~~~~~~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~--~r~~~~~v~~-------~~~IYV~ 90 (376)
T PRK14131 20 EQLPDLPVPFKNGTGAIDNNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGG--PREQAVAAFI-------DGKLYVF 90 (376)
T ss_pred ccCCCCCcCccCCeEEEECCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCC--CcccceEEEE-------CCEEEEE
Confidence 344444434333346778889998766 4568888876 4789999988732 3334444444 3679999
Q ss_pred ecccC---------ceEEEEEeCCCCceeecccccccccccccccccCCccc-cCCeEEEeecCCceee----ecccC--
Q 038464 172 YGELP---------KLSFKVYNSCLNCWEEETLLLSRKSEQALEVDSIDHHD-DEDAVYFLSKAGNVVA----TNMQR-- 235 (404)
Q Consensus 172 ~g~~~---------~~~~~vy~~~~~~W~~~~~~~p~~~~~~~~~~~~~~v~-~~G~ly~~~~~~~~~~----~~~~~-- 235 (404)
||... ...+++||+.+++|+.++...|+.... ...+. .+|+||++||...... .|...
T Consensus 91 GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~------~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~ 164 (376)
T PRK14131 91 GGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAG------HVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAG 164 (376)
T ss_pred cCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccc------eEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcc
Confidence 87532 146999999999999987523332111 02233 7999999998532100 00000
Q ss_pred CCcccccceeeecCCceEEEEec------cCCeEEEEecCCCceeeccccCCccccccceeEeeCCeEEEEEeeecccee
Q 038464 236 SPSKQYSSVITSKDGEEIVYFLN------SCGTIVACNLTQKSFTEYPRLLPVFSEYSIDVVECRGELLVVVLSEFLESA 309 (404)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~y~~~------~~~~i~~fD~~~~~w~~i~~~~p~~~~~~~~lv~~~g~L~~v~~~~~~~~~ 309 (404)
..... ...+ . ..|+.. ..+.+.+||++++.|+.+. ++|......+.++..+++||++++.......
T Consensus 165 ~~~~~-~~~i--~----~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~-~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~ 236 (376)
T PRK14131 165 KDKTP-KDKI--N----DAYFDKKPEDYFFNKEVLSYDPSTNQWKNAG-ESPFLGTAGSAVVIKGNKLWLINGEIKPGLR 236 (376)
T ss_pred cchhh-hhhh--H----HHHhcCChhhcCcCceEEEEECCCCeeeECC-cCCCCCCCcceEEEECCEEEEEeeeECCCcC
Confidence 00000 0000 0 000000 0246999999999999985 3553222345677889999999986422223
Q ss_pred eEEEE--EEeCCCCCeEEeccCChhHHHHhccCcceEEEEecCCEEEEEEecCCC--------------------ceEEE
Q 038464 310 SLRVW--RFDQDNGFWHQIAAMPPAMSHEFYGKKVDINCVAAGHQIFICFNSAEL--------------------FSYVL 367 (404)
Q Consensus 310 ~~~vw--~l~~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~~~--------------------~~~~~ 367 (404)
..++| .+++++.+|.++..||..-............++..+++|||+...... ..+.+
T Consensus 237 ~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 316 (376)
T PRK14131 237 TDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEI 316 (376)
T ss_pred ChhheEEEecCCCcceeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehhe
Confidence 34454 556677899999999742110000000112234568889876542110 13578
Q ss_pred EECCCCceEECCCCC
Q 038464 368 CDLVTNEWVELPKCS 382 (404)
Q Consensus 368 yd~~~~~w~~~~~~~ 382 (404)
||+++++|+.++.+|
T Consensus 317 yd~~~~~W~~~~~lp 331 (376)
T PRK14131 317 YALVNGKWQKVGELP 331 (376)
T ss_pred EEecCCcccccCcCC
Confidence 999999999998877
No 11
>PLN02193 nitrile-specifier protein
Probab=99.76 E-value=2.9e-16 Score=152.64 Aligned_cols=237 Identities=16% Similarity=0.125 Sum_probs=158.2
Q ss_pred CceeeccCC---CCCCCeeEEEecCceEEEEeCC--------CeEEEEcCCCCCeeeCCCCC-CCCCCCceeEEEEEecC
Q 038464 93 KTWKELNFP---NSSPDSIPVAASGGLVCFRTAS--------GKFIVSNPVTGSSRELPPLD-ADTENQSLHAIVMTTSS 160 (404)
Q Consensus 93 ~~w~~l~~p---~~~~~~~~~~s~~Glv~~~~~~--------~~~~v~NP~t~~w~~lP~~~-~~~~~~~~~~~~~~g~~ 160 (404)
.+|.++... +.++..+.++..++.|++.++. +.+++||+.+++|..+|++. .+...+..++++.+
T Consensus 151 ~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~--- 227 (470)
T PLN02193 151 GKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSI--- 227 (470)
T ss_pred ceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEE---
Confidence 689987642 3344445567778888887761 35899999999999887753 22222333444444
Q ss_pred CCCCceEEEEEeccc---CceEEEEEeCCCCceeeccccc---cc-ccccccccccCCccccCCeEEEeecCCceeeecc
Q 038464 161 KNPSNYKLVLVYGEL---PKLSFKVYNSCLNCWEEETLLL---SR-KSEQALEVDSIDHHDDEDAVYFLSKAGNVVATNM 233 (404)
Q Consensus 161 ~~~~~~kv~~~~g~~---~~~~~~vy~~~~~~W~~~~~~~---p~-~~~~~~~~~~~~~v~~~G~ly~~~~~~~~~~~~~ 233 (404)
+.+||++||.. ....+++||+.+++|+.++. + |. +..+ ..+..++++|+++|....
T Consensus 228 ----~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~-~~~~P~~R~~h-------~~~~~~~~iYv~GG~~~~----- 290 (470)
T PLN02193 228 ----GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTP-VEEGPTPRSFH-------SMAADEENVYVFGGVSAT----- 290 (470)
T ss_pred ----CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCc-CCCCCCCccce-------EEEEECCEEEEECCCCCC-----
Confidence 35789998753 23579999999999999876 4 22 2122 346789999999885310
Q ss_pred cCCCcccccceeeecCCceEEEEeccCCeEEEEecCCCceeecccc--CCccccccceeEeeCCeEEEEEeeeccceeeE
Q 038464 234 QRSPSKQYSSVITSKDGEEIVYFLNSCGTIVACNLTQKSFTEYPRL--LPVFSEYSIDVVECRGELLVVVLSEFLESASL 311 (404)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~y~~~~~~~i~~fD~~~~~w~~i~~~--~p~~~~~~~~lv~~~g~L~~v~~~~~~~~~~~ 311 (404)
. ..+.+.+||+.+++|+.++.+ +|... ..+.++..+|++|++++... ...-
T Consensus 291 ------~------------------~~~~~~~yd~~t~~W~~~~~~~~~~~~R-~~~~~~~~~gkiyviGG~~g--~~~~ 343 (470)
T PLN02193 291 ------A------------------RLKTLDSYNIVDKKWFHCSTPGDSFSIR-GGAGLEVVQGKVWVVYGFNG--CEVD 343 (470)
T ss_pred ------C------------------CcceEEEEECCCCEEEeCCCCCCCCCCC-CCcEEEEECCcEEEEECCCC--CccC
Confidence 0 012588999999999988542 22212 34567778999999998531 2245
Q ss_pred EEEEEeCCCCCeEEeccCChhHHHHhccCcceEEEEecCCEEEEEEecCC------------CceEEEEECCCCceEECC
Q 038464 312 RVWRFDQDNGFWHQIAAMPPAMSHEFYGKKVDINCVAAGHQIFICFNSAE------------LFSYVLCDLVTNEWVELP 379 (404)
Q Consensus 312 ~vw~l~~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~~------------~~~~~~yd~~~~~w~~~~ 379 (404)
++|.+|..+++|+++..++... ..+....++..+++|||+..... ...+++||+.+++|+.++
T Consensus 344 dv~~yD~~t~~W~~~~~~g~~P-----~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~ 418 (470)
T PLN02193 344 DVHYYDPVQDKWTQVETFGVRP-----SERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLD 418 (470)
T ss_pred ceEEEECCCCEEEEeccCCCCC-----CCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcc
Confidence 6899999999999998763110 11222345566889987643211 135899999999999887
Q ss_pred CC
Q 038464 380 KC 381 (404)
Q Consensus 380 ~~ 381 (404)
.+
T Consensus 419 ~~ 420 (470)
T PLN02193 419 KF 420 (470)
T ss_pred cC
Confidence 54
No 12
>PHA02790 Kelch-like protein; Provisional
Probab=99.76 E-value=4.1e-17 Score=159.01 Aligned_cols=185 Identities=8% Similarity=-0.035 Sum_probs=139.9
Q ss_pred eeeeecCCCceeeccCCCCCCCeeEEEecCceEEEEeC---CCeEEEEcCCCCCeeeCCCCCCCCCCCceeEEEEEecCC
Q 038464 85 SIVFDSAEKTWKELNFPNSSPDSIPVAASGGLVCFRTA---SGKFIVSNPVTGSSRELPPLDADTENQSLHAIVMTTSSK 161 (404)
Q Consensus 85 ~~~~d~~~~~w~~l~~p~~~~~~~~~~s~~Glv~~~~~---~~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~g~~~ 161 (404)
...|||..++|..++.++.++.....++.+|.||+.++ ...+..|||.+++|..+|+|+. .+..++++.+
T Consensus 289 v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~---~r~~~~~~~~---- 361 (480)
T PHA02790 289 AIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLK---PRCNPAVASI---- 361 (480)
T ss_pred EEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCC---CCcccEEEEE----
Confidence 45799999999999877766655667889999999987 3467899999999999999994 4444555555
Q ss_pred CCCceEEEEEecccC-ceEEEEEeCCCCceeecccccccccccccccccCCccccCCeEEEeecCCceeeecccCCCccc
Q 038464 162 NPSNYKLVLVYGELP-KLSFKVYNSCLNCWEEETLLLSRKSEQALEVDSIDHHDDEDAVYFLSKAGNVVATNMQRSPSKQ 240 (404)
Q Consensus 162 ~~~~~kv~~~~g~~~-~~~~~vy~~~~~~W~~~~~~~p~~~~~~~~~~~~~~v~~~G~ly~~~~~~~~~~~~~~~~~~~~ 240 (404)
+.+||++||... ...++.||+.++.|+..++ ++..... ...+.++|++|++||
T Consensus 362 ---~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~-m~~~r~~------~~~~~~~~~IYv~GG---------------- 415 (480)
T PHA02790 362 ---NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPS-TYYPHYK------SCALVFGRRLFLVGR---------------- 415 (480)
T ss_pred ---CCEEEEecCcCCCCccEEEEeCCCCEEEeCCC-CCCcccc------ceEEEECCEEEEECC----------------
Confidence 588999988532 3579999999999999988 5542111 135688999999876
Q ss_pred ccceeeecCCceEEEEeccCCeEEEEecCCCceeeccccCCccccccceeEeeCCeEEEEEeeeccceeeEEEEEEeCCC
Q 038464 241 YSSVITSKDGEEIVYFLNSCGTIVACNLTQKSFTEYPRLLPVFSEYSIDVVECRGELLVVVLSEFLESASLRVWRFDQDN 320 (404)
Q Consensus 241 ~~~~~~~~~~~~~~y~~~~~~~i~~fD~~~~~w~~i~~~~p~~~~~~~~lv~~~g~L~~v~~~~~~~~~~~~vw~l~~~~ 320 (404)
....||+++++|+.++ ++|... ..+.++..+|+||++||.+.. ...-.|..+|+++
T Consensus 416 ---------------------~~e~ydp~~~~W~~~~-~m~~~r-~~~~~~v~~~~IYviGG~~~~-~~~~~ve~Yd~~~ 471 (480)
T PHA02790 416 ---------------------NAEFYCESSNTWTLID-DPIYPR-DNPELIIVDNKLLLIGGFYRG-SYIDTIEVYNNRT 471 (480)
T ss_pred ---------------------ceEEecCCCCcEeEcC-CCCCCc-cccEEEEECCEEEEECCcCCC-cccceEEEEECCC
Confidence 2567999999999985 355432 346788999999999986422 1123467779988
Q ss_pred CCeEEe
Q 038464 321 GFWHQI 326 (404)
Q Consensus 321 ~~W~~v 326 (404)
++|+-.
T Consensus 472 ~~W~~~ 477 (480)
T PHA02790 472 YSWNIW 477 (480)
T ss_pred CeEEec
Confidence 899764
No 13
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=99.76 E-value=1.7e-16 Score=144.97 Aligned_cols=297 Identities=15% Similarity=0.160 Sum_probs=158.6
Q ss_pred CCcccChHHHHHHHHhcCCh-hhhhHhhhcchhhhhccCChhHHHHhhcCCCCCCeEEEEcCC-CCceeeeecCCC----
Q 038464 20 FSMEELNQDLLERVLSWLPT-STFFRLSSVCKRWKSVADSPSFKLACSQIPSRDPWFLMVDHQ-LNHSIVFDSAEK---- 93 (404)
Q Consensus 20 ~~~~~LP~dll~~Il~rLp~-~~l~r~~~Vck~W~~li~~~~F~~~~~~~~~~~p~~~~~~~~-~~~~~~~d~~~~---- 93 (404)
..|++||+|||..|..|||. .++.|+|+|||+||+.+....- + ... +++||+++..-. .......|+...
T Consensus 2 ~~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~~~-~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (373)
T PLN03215 2 ADWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGVGK-K--NPF-RTRPLILFNPINPSETLTDDRSYISRPGA 77 (373)
T ss_pred CChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcccccc-c--CCc-ccccccccCcccCCCCccccccccccccc
Confidence 67999999999999999987 8999999999999999864210 0 001 123554432200 000000111000
Q ss_pred -----ceeeccCCCCCCCeeEEEecCceEEEEeC---CCeEEEEcCCCCCeeeCCCCCCCCCC----CceeEEEEEecC-
Q 038464 94 -----TWKELNFPNSSPDSIPVAASGGLVCFRTA---SGKFIVSNPVTGSSRELPPLDADTEN----QSLHAIVMTTSS- 160 (404)
Q Consensus 94 -----~w~~l~~p~~~~~~~~~~s~~Glv~~~~~---~~~~~v~NP~t~~w~~lP~~~~~~~~----~~~~~~~~~g~~- 160 (404)
..++++.+. +...|++.-... ...+.+.||+++.-..+|+.-..--+ ....+..+.+.+
T Consensus 78 ~ls~~~~~r~~~~~--------~~~~~WLik~~~~~~~~~~~Ll~PLsr~~~~~~~~~lnll~f~v~ei~~~y~l~~~~~ 149 (373)
T PLN03215 78 FLSRAAFFRVTLSS--------SPSKGWLIKSDMDVNSGRFHLLNPLSRLPLRHSSESVDLLEFTVSEIREAYQVLDWAK 149 (373)
T ss_pred eeeeeEEEEeecCC--------CCCCCcEEEEeccccCCccEecCccccCccCCCCccceeeeeEEEEccceEEEEeccc
Confidence 111222111 235677776553 46788999999987666652110000 000011111110
Q ss_pred ----------------C--CCCceEEEEEecccCceEEEEEeCCCCceeecccccccccccccccccCCccccCCeEEEe
Q 038464 161 ----------------K--NPSNYKLVLVYGELPKLSFKVYNSCLNCWEEETLLLSRKSEQALEVDSIDHHDDEDAVYFL 222 (404)
Q Consensus 161 ----------------~--~~~~~kv~~~~g~~~~~~~~vy~~~~~~W~~~~~~~p~~~~~~~~~~~~~~v~~~G~ly~~ 222 (404)
. ...+|-|++++. ...+..++ .++|+.+.. .... . .+.++++|++|.+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~vl~i~~---~g~l~~w~--~~~Wt~l~~-~~~~-~-------~DIi~~kGkfYAv 215 (373)
T PLN03215 150 RRETRPGYQRSALVKVKEGDNHRDGVLGIGR---DGKINYWD--GNVLKALKQ-MGYH-F-------SDIIVHKGQTYAL 215 (373)
T ss_pred ccccccceeEEEEEEeecCCCcceEEEEEee---cCcEeeec--CCeeeEccC-CCce-e-------eEEEEECCEEEEE
Confidence 0 011233444331 12333344 489998864 2211 1 1568999999998
Q ss_pred ecCCceeeecccCCCcccccceeeecCCceEEEEeccCCeEEEEecCCCceeeccccCCccccccceeEeeCCeEEEEEe
Q 038464 223 SKAGNVVATNMQRSPSKQYSSVITSKDGEEIVYFLNSCGTIVACNLTQKSFTEYPRLLPVFSEYSIDVVECRGELLVVVL 302 (404)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~i~~fD~~~~~w~~i~~~~p~~~~~~~~lv~~~g~L~~v~~ 302 (404)
...+...+++.. -.+..+.+ .|... +..........||++.|+|++|..
T Consensus 216 D~~G~l~~i~~~--------------------------l~i~~v~~---~i~~~--~~~g~~~~~~yLVEs~GdLLmV~R 264 (373)
T PLN03215 216 DSIGIVYWINSD--------------------------LEFSRFGT---SLDEN--ITDGCWTGDRRFVECCGELYIVER 264 (373)
T ss_pred cCCCeEEEEecC--------------------------Cceeeecc---eeccc--ccCCcccCceeEEEECCEEEEEEE
Confidence 654433222200 01111110 01100 000111123579999999999987
Q ss_pred eec-------------cceeeEEEEEEeCCCCCeEEeccCChhHHHHhccCcceEEEE------ecCCEEEEEEecCCCc
Q 038464 303 SEF-------------LESASLRVWRFDQDNGFWHQIAAMPPAMSHEFYGKKVDINCV------AAGHQIFICFNSAELF 363 (404)
Q Consensus 303 ~~~-------------~~~~~~~vw~l~~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~------~~~~~i~v~~~~~~~~ 363 (404)
... .....++||++|.+..+|+++.++++... |.+....+.+. ..+|.||+. +..
T Consensus 265 ~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sLgd~aL--FlG~~~s~sv~a~e~pG~k~NcIYFt----dd~ 338 (373)
T PLN03215 265 LPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTLGDNAF--VMATDTCFSVLAHEFYGCLPNSIYFT----EDT 338 (373)
T ss_pred EccCcccccccccccccceeEEEEEEEcCCCCcEEEecccCCeEE--EEECCccEEEecCCCCCccCCEEEEE----CCC
Confidence 421 12367999999998889999999987521 22323222222 136999864 234
Q ss_pred eEEEEECCCCceEECC
Q 038464 364 SYVLCDLVTNEWVELP 379 (404)
Q Consensus 364 ~~~~yd~~~~~w~~~~ 379 (404)
...|||++.++...+.
T Consensus 339 ~~~v~~~~dg~~~~~~ 354 (373)
T PLN03215 339 MPKVFKLDNGNGSSIE 354 (373)
T ss_pred cceEEECCCCCccceE
Confidence 5669999999865443
No 14
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.72 E-value=1.5e-15 Score=141.26 Aligned_cols=221 Identities=11% Similarity=0.031 Sum_probs=142.8
Q ss_pred EEecCceEEEEeC---C-------------CeEEEEc-CCCC-CeeeCCCCCCCCCCCceeEEEEEecCCCCCceEEEEE
Q 038464 110 VAASGGLVCFRTA---S-------------GKFIVSN-PVTG-SSRELPPLDADTENQSLHAIVMTTSSKNPSNYKLVLV 171 (404)
Q Consensus 110 ~~s~~Glv~~~~~---~-------------~~~~v~N-P~t~-~w~~lP~~~~~~~~~~~~~~~~~g~~~~~~~~kv~~~ 171 (404)
.+..++.|++.++ + +.+++++ +..+ +|..+++|+. .+..++.+.+ +-+|+++
T Consensus 9 ~~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~lp~---~r~~~~~~~~-------~~~lyvi 78 (323)
T TIGR03548 9 AGIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQLPY---EAAYGASVSV-------ENGIYYI 78 (323)
T ss_pred eeEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccCCc---cccceEEEEE-------CCEEEEE
Confidence 5566777777776 1 1466664 4433 7999999884 3333444444 3568999
Q ss_pred ecccC---ceEEEEEeCCCCce----eecccccccccccccccccCCccccCCeEEEeecCCceeeecccCCCcccccce
Q 038464 172 YGELP---KLSFKVYNSCLNCW----EEETLLLSRKSEQALEVDSIDHHDDEDAVYFLSKAGNVVATNMQRSPSKQYSSV 244 (404)
Q Consensus 172 ~g~~~---~~~~~vy~~~~~~W----~~~~~~~p~~~~~~~~~~~~~~v~~~G~ly~~~~~~~~~~~~~~~~~~~~~~~~ 244 (404)
||... ...++.||+.++.| +.++. +|..... ...+.++|+||+++|..+..
T Consensus 79 GG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~-lp~~~~~------~~~~~~~~~iYv~GG~~~~~--------------- 136 (323)
T TIGR03548 79 GGSNSSERFSSVYRITLDESKEELICETIGN-LPFTFEN------GSACYKDGTLYVGGGNRNGK--------------- 136 (323)
T ss_pred cCCCCCCCceeEEEEEEcCCceeeeeeEcCC-CCcCccC------ceEEEECCEEEEEeCcCCCc---------------
Confidence 87532 35799999999998 55555 5542111 14577899999998842100
Q ss_pred eeecCCceEEEEeccCCeEEEEecCCCceeeccccCCccccccceeEeeCCeEEEEEeeeccceeeEEEEEEeCCCCCeE
Q 038464 245 ITSKDGEEIVYFLNSCGTIVACNLTQKSFTEYPRLLPVFSEYSIDVVECRGELLVVVLSEFLESASLRVWRFDQDNGFWH 324 (404)
Q Consensus 245 ~~~~~~~~~~y~~~~~~~i~~fD~~~~~w~~i~~~~p~~~~~~~~lv~~~g~L~~v~~~~~~~~~~~~vw~l~~~~~~W~ 324 (404)
..+.+.+||+++++|+.++ ++|......+.++..+++||++++.+. ....+++.+|+.+++|+
T Consensus 137 --------------~~~~v~~yd~~~~~W~~~~-~~p~~~r~~~~~~~~~~~iYv~GG~~~--~~~~~~~~yd~~~~~W~ 199 (323)
T TIGR03548 137 --------------PSNKSYLFNLETQEWFELP-DFPGEPRVQPVCVKLQNELYVFGGGSN--IAYTDGYKYSPKKNQWQ 199 (323)
T ss_pred --------------cCceEEEEcCCCCCeeECC-CCCCCCCCcceEEEECCEEEEEcCCCC--ccccceEEEecCCCeeE
Confidence 0136899999999999985 344322234556788999999998642 22346788999889999
Q ss_pred EeccCChh-HHHHhccCcceEEEEecCCEEEEEEecCC-----------------------------------CceEEEE
Q 038464 325 QIAAMPPA-MSHEFYGKKVDINCVAAGHQIFICFNSAE-----------------------------------LFSYVLC 368 (404)
Q Consensus 325 ~v~~~~~~-~~~~~~~~~~~~~~~~~~~~i~v~~~~~~-----------------------------------~~~~~~y 368 (404)
++..|+.. ... .......++..++.|||+..... ...+.+|
T Consensus 200 ~~~~~~~~~~p~---~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~y 276 (323)
T TIGR03548 200 KVADPTTDSEPI---SLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIY 276 (323)
T ss_pred ECCCCCCCCCce---eccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEE
Confidence 99887421 100 00111223345788887543211 1469999
Q ss_pred ECCCCceEECCCCC
Q 038464 369 DLVTNEWVELPKCS 382 (404)
Q Consensus 369 d~~~~~w~~~~~~~ 382 (404)
|+.+++|+.++.+|
T Consensus 277 d~~~~~W~~~~~~p 290 (323)
T TIGR03548 277 NVRTGKWKSIGNSP 290 (323)
T ss_pred ECCCCeeeEccccc
Confidence 99999999998765
No 15
>PLN02153 epithiospecifier protein
Probab=99.72 E-value=2.6e-15 Score=140.65 Aligned_cols=208 Identities=13% Similarity=0.155 Sum_probs=137.1
Q ss_pred ceeeeecCCCceeeccCCC-CCC---CeeEEEecCceEEEEeC------CCeEEEEcCCCCCeeeCCCCCC--CCCCCce
Q 038464 84 HSIVFDSAEKTWKELNFPN-SSP---DSIPVAASGGLVCFRTA------SGKFIVSNPVTGSSRELPPLDA--DTENQSL 151 (404)
Q Consensus 84 ~~~~~d~~~~~w~~l~~p~-~~~---~~~~~~s~~Glv~~~~~------~~~~~v~NP~t~~w~~lP~~~~--~~~~~~~ 151 (404)
....||+.+++|..++... .+. ....+++.++.|++.++ .+.+++|||.+++|..++++.. .+..+..
T Consensus 51 ~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~ 130 (341)
T PLN02153 51 DLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTF 130 (341)
T ss_pred cEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCcee
Confidence 3568999999999876432 221 13446778899998876 2478999999999999988731 0134445
Q ss_pred eEEEEEecCCCCCceEEEEEecccC---------ceEEEEEeCCCCceeecccccc---c-ccccccccccCCccccCCe
Q 038464 152 HAIVMTTSSKNPSNYKLVLVYGELP---------KLSFKVYNSCLNCWEEETLLLS---R-KSEQALEVDSIDHHDDEDA 218 (404)
Q Consensus 152 ~~~~~~g~~~~~~~~kv~~~~g~~~---------~~~~~vy~~~~~~W~~~~~~~p---~-~~~~~~~~~~~~~v~~~G~ 218 (404)
++++.. +.|||++||... ...+++||+++++|+.++. +. . +..+ ..+.++|+
T Consensus 131 ~~~~~~-------~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~-~~~~~~~r~~~-------~~~~~~~~ 195 (341)
T PLN02153 131 HSMASD-------ENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPD-PGENFEKRGGA-------GFAVVQGK 195 (341)
T ss_pred eEEEEE-------CCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCC-CCCCCCCCCcc-------eEEEECCe
Confidence 555444 467999987521 1368999999999999876 22 1 1111 34678999
Q ss_pred EEEeecCCceeeecccCCCcccccceeeecCCceEEEEeccCCeEEEEecCCCceeeccc--cCCccccccceeEeeCCe
Q 038464 219 VYFLSKAGNVVATNMQRSPSKQYSSVITSKDGEEIVYFLNSCGTIVACNLTQKSFTEYPR--LLPVFSEYSIDVVECRGE 296 (404)
Q Consensus 219 ly~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~i~~fD~~~~~w~~i~~--~~p~~~~~~~~lv~~~g~ 296 (404)
+|+++|...-... +|. .-+ ..+.+..||+++++|+.+.. .+|... ..+..+..+++
T Consensus 196 iyv~GG~~~~~~~-----------------gG~-~~~---~~~~v~~yd~~~~~W~~~~~~g~~P~~r-~~~~~~~~~~~ 253 (341)
T PLN02153 196 IWVVYGFATSILP-----------------GGK-SDY---ESNAVQFFDPASGKWTEVETTGAKPSAR-SVFAHAVVGKY 253 (341)
T ss_pred EEEEecccccccc-----------------CCc-cce---ecCceEEEEcCCCcEEeccccCCCCCCc-ceeeeEEECCE
Confidence 9999874210000 000 000 01368999999999998853 134322 23556788999
Q ss_pred EEEEEeeecc--------ceeeEEEEEEeCCCCCeEEecc
Q 038464 297 LLVVVLSEFL--------ESASLRVWRFDQDNGFWHQIAA 328 (404)
Q Consensus 297 L~~v~~~~~~--------~~~~~~vw~l~~~~~~W~~v~~ 328 (404)
||++++.... ....-+||.+|.++++|+++..
T Consensus 254 iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~ 293 (341)
T PLN02153 254 IIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGE 293 (341)
T ss_pred EEEECcccCCccccccccccccccEEEEEcCccEEEeccC
Confidence 9999985210 1123479999999999999864
No 16
>PHA03098 kelch-like protein; Provisional
Probab=99.69 E-value=1.7e-15 Score=150.64 Aligned_cols=201 Identities=13% Similarity=0.144 Sum_probs=145.2
Q ss_pred eeeeecCCCceeeccCCCCCCCeeEEEecCceEEEEeC------CCeEEEEcCCCCCeeeCCCCCCCCCCCceeEEEEEe
Q 038464 85 SIVFDSAEKTWKELNFPNSSPDSIPVAASGGLVCFRTA------SGKFIVSNPVTGSSRELPPLDADTENQSLHAIVMTT 158 (404)
Q Consensus 85 ~~~~d~~~~~w~~l~~p~~~~~~~~~~s~~Glv~~~~~------~~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~g 158 (404)
...||+.+++|..++..+.++....+++.+|.+++.++ .+.+.+|||.+++|..+++++. .+..++++.+
T Consensus 313 v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~---~r~~~~~~~~- 388 (534)
T PHA03098 313 VVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIF---PRYNPCVVNV- 388 (534)
T ss_pred EEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCc---CCccceEEEE-
Confidence 46899999999998876655555667788999999887 2468899999999999999984 3444555444
Q ss_pred cCCCCCceEEEEEeccc----CceEEEEEeCCCCceeecccccccccccccccccCCccccCCeEEEeecCCceeeeccc
Q 038464 159 SSKNPSNYKLVLVYGEL----PKLSFKVYNSCLNCWEEETLLLSRKSEQALEVDSIDHHDDEDAVYFLSKAGNVVATNMQ 234 (404)
Q Consensus 159 ~~~~~~~~kv~~~~g~~----~~~~~~vy~~~~~~W~~~~~~~p~~~~~~~~~~~~~~v~~~G~ly~~~~~~~~~~~~~~ 234 (404)
+.+|+++||.. ....+++||+.+++|+.++. +|..... ...+..+|.+|++||..+...
T Consensus 389 ------~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~-~p~~r~~------~~~~~~~~~iyv~GG~~~~~~---- 451 (534)
T PHA03098 389 ------NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSP-LPISHYG------GCAIYHDGKIYVIGGISYIDN---- 451 (534)
T ss_pred ------CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCC-CCccccC------ceEEEECCEEEEECCccCCCC----
Confidence 46899998742 12579999999999999887 6642111 135778999999987531000
Q ss_pred CCCcccccceeeecCCceEEEEeccCCeEEEEecCCCceeeccccCCccccccceeEeeCCeEEEEEeeeccceeeEEEE
Q 038464 235 RSPSKQYSSVITSKDGEEIVYFLNSCGTIVACNLTQKSFTEYPRLLPVFSEYSIDVVECRGELLVVVLSEFLESASLRVW 314 (404)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~y~~~~~~~i~~fD~~~~~w~~i~~~~p~~~~~~~~lv~~~g~L~~v~~~~~~~~~~~~vw 314 (404)
.. ..+.+..||+++++|+.++. +|... ..+.++..+|+||++||.... ...-.|+
T Consensus 452 ---~~-------------------~~~~v~~yd~~~~~W~~~~~-~~~~r-~~~~~~~~~~~iyv~GG~~~~-~~~~~v~ 506 (534)
T PHA03098 452 ---IK-------------------VYNIVESYNPVTNKWTELSS-LNFPR-INASLCIFNNKIYVVGGDKYE-YYINEIE 506 (534)
T ss_pred ---Cc-------------------ccceEEEecCCCCceeeCCC-CCccc-ccceEEEECCEEEEEcCCcCC-cccceeE
Confidence 00 01258999999999999853 44322 235667789999999986422 2234588
Q ss_pred EEeCCCCCeEEeccCCh
Q 038464 315 RFDQDNGFWHQIAAMPP 331 (404)
Q Consensus 315 ~l~~~~~~W~~v~~~~~ 331 (404)
.+|..+++|+.+..+|.
T Consensus 507 ~yd~~~~~W~~~~~~p~ 523 (534)
T PHA03098 507 VYDDKTNTWTLFCKFPK 523 (534)
T ss_pred EEeCCCCEEEecCCCcc
Confidence 88999999999998874
No 17
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.69 E-value=1.6e-14 Score=137.00 Aligned_cols=244 Identities=13% Similarity=0.077 Sum_probs=154.1
Q ss_pred ceeeeecC--CCceeeccCCC-CCCCeeEEEecCceEEEEeCC------------CeEEEEcCCCCCeeeCCCCCCCCCC
Q 038464 84 HSIVFDSA--EKTWKELNFPN-SSPDSIPVAASGGLVCFRTAS------------GKFIVSNPVTGSSRELPPLDADTEN 148 (404)
Q Consensus 84 ~~~~~d~~--~~~w~~l~~p~-~~~~~~~~~s~~Glv~~~~~~------------~~~~v~NP~t~~w~~lP~~~~~~~~ 148 (404)
....||.. +++|..++..+ .++....+++.+|.||+.++. +.+++|||.+++|..++++. + ..
T Consensus 51 ~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~-p-~~ 128 (376)
T PRK14131 51 SWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRS-P-VG 128 (376)
T ss_pred eEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCC-C-Cc
Confidence 35577764 46899887543 344445577889999998761 35889999999999998632 1 22
Q ss_pred CceeEEEEEecCCCCCceEEEEEecccC-------------------------------------ceEEEEEeCCCCcee
Q 038464 149 QSLHAIVMTTSSKNPSNYKLVLVYGELP-------------------------------------KLSFKVYNSCLNCWE 191 (404)
Q Consensus 149 ~~~~~~~~~g~~~~~~~~kv~~~~g~~~-------------------------------------~~~~~vy~~~~~~W~ 191 (404)
+..++.+... +.+||++||... ...+++||+.++.|+
T Consensus 129 ~~~~~~~~~~------~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~ 202 (376)
T PRK14131 129 LAGHVAVSLH------NGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWK 202 (376)
T ss_pred ccceEEEEee------CCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeee
Confidence 3233333312 578999987521 146999999999999
Q ss_pred eccccccc-ccccccccccCCccccCCeEEEeecCCceeeecccCCCcccccceeeecCCceEEEEeccCCeEEEEecCC
Q 038464 192 EETLLLSR-KSEQALEVDSIDHHDDEDAVYFLSKAGNVVATNMQRSPSKQYSSVITSKDGEEIVYFLNSCGTIVACNLTQ 270 (404)
Q Consensus 192 ~~~~~~p~-~~~~~~~~~~~~~v~~~G~ly~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~i~~fD~~~ 270 (404)
.++. +|. ...+ ...+.++++||+++|...- . ... . .-....||+++
T Consensus 203 ~~~~-~p~~~~~~------~a~v~~~~~iYv~GG~~~~----------~-~~~-~--------------~~~~~~~~~~~ 249 (376)
T PRK14131 203 NAGE-SPFLGTAG------SAVVIKGNKLWLINGEIKP----------G-LRT-D--------------AVKQGKFTGNN 249 (376)
T ss_pred ECCc-CCCCCCCc------ceEEEECCEEEEEeeeECC----------C-cCC-h--------------hheEEEecCCC
Confidence 9887 664 2111 1357789999999984210 0 000 0 00345678899
Q ss_pred CceeeccccCCcccc-------ccceeEeeCCeEEEEEeeeccc----------------eeeEEEEEEeCCCCCeEEec
Q 038464 271 KSFTEYPRLLPVFSE-------YSIDVVECRGELLVVVLSEFLE----------------SASLRVWRFDQDNGFWHQIA 327 (404)
Q Consensus 271 ~~w~~i~~~~p~~~~-------~~~~lv~~~g~L~~v~~~~~~~----------------~~~~~vw~l~~~~~~W~~v~ 327 (404)
++|..++ ++|.... ..+..+..+|+||++|+..... .....+-.++.++++|+++.
T Consensus 250 ~~W~~~~-~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~ 328 (376)
T PRK14131 250 LKWQKLP-DLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVG 328 (376)
T ss_pred cceeecC-CCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccC
Confidence 9999885 3443211 0122466899999999853110 00112334466667999999
Q ss_pred cCChhHHHHhccCcceEEEEecCCEEEEEEecC----CCceEEEEECCCCceEE
Q 038464 328 AMPPAMSHEFYGKKVDINCVAAGHQIFICFNSA----ELFSYVLCDLVTNEWVE 377 (404)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~----~~~~~~~yd~~~~~w~~ 377 (404)
.||.+. ....++..++.|||+.+.. ....+.+|+.+++.+..
T Consensus 329 ~lp~~r--------~~~~av~~~~~iyv~GG~~~~~~~~~~v~~~~~~~~~~~~ 374 (376)
T PRK14131 329 ELPQGL--------AYGVSVSWNNGVLLIGGETAGGKAVSDVTLLSWDGKKLTV 374 (376)
T ss_pred cCCCCc--------cceEEEEeCCEEEEEcCCCCCCcEeeeEEEEEEcCCEEEE
Confidence 998431 1234567799999875432 12478889988887753
No 18
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.69 E-value=1.8e-14 Score=135.38 Aligned_cols=220 Identities=14% Similarity=0.102 Sum_probs=141.5
Q ss_pred ceeeeec--CCCceeeccCCC-CCCCeeEEEecCceEEEEeCC------------CeEEEEcCCCCCeeeCCC-CCCCCC
Q 038464 84 HSIVFDS--AEKTWKELNFPN-SSPDSIPVAASGGLVCFRTAS------------GKFIVSNPVTGSSRELPP-LDADTE 147 (404)
Q Consensus 84 ~~~~~d~--~~~~w~~l~~p~-~~~~~~~~~s~~Glv~~~~~~------------~~~~v~NP~t~~w~~lP~-~~~~~~ 147 (404)
....||+ ..++|..++..+ .++....+++.+|.||+.++. +.+++|||.+++|..++. ++ .
T Consensus 30 ~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p---~ 106 (346)
T TIGR03547 30 SWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSP---V 106 (346)
T ss_pred eeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCC---C
Confidence 3556774 567899988755 345555678889999998862 358899999999999974 33 2
Q ss_pred CCceeEEE-EEecCCCCCceEEEEEecccC-------------------------------------ceEEEEEeCCCCc
Q 038464 148 NQSLHAIV-MTTSSKNPSNYKLVLVYGELP-------------------------------------KLSFKVYNSCLNC 189 (404)
Q Consensus 148 ~~~~~~~~-~~g~~~~~~~~kv~~~~g~~~-------------------------------------~~~~~vy~~~~~~ 189 (404)
.+..++.+ .+ +.|||++||... ...+++||+.+++
T Consensus 107 ~~~~~~~~~~~-------~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~ 179 (346)
T TIGR03547 107 GLLGASGFSLH-------NGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQ 179 (346)
T ss_pred cccceeEEEEe-------CCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCc
Confidence 33223222 23 578999987521 1579999999999
Q ss_pred eeecccccccccccccccccCCccccCCeEEEeecCCceeeecccCCCcccccceeeecCCceEEEEeccCCeEEE--Ee
Q 038464 190 WEEETLLLSRKSEQALEVDSIDHHDDEDAVYFLSKAGNVVATNMQRSPSKQYSSVITSKDGEEIVYFLNSCGTIVA--CN 267 (404)
Q Consensus 190 W~~~~~~~p~~~~~~~~~~~~~~v~~~G~ly~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~i~~--fD 267 (404)
|+.++. +|..+.. ....+.++|+||+++|...- . .. ...+.. ||
T Consensus 180 W~~~~~-~p~~~r~-----~~~~~~~~~~iyv~GG~~~~----------~-~~-----------------~~~~~~y~~~ 225 (346)
T TIGR03547 180 WRNLGE-NPFLGTA-----GSAIVHKGNKLLLINGEIKP----------G-LR-----------------TAEVKQYLFT 225 (346)
T ss_pred eeECcc-CCCCcCC-----CceEEEECCEEEEEeeeeCC----------C-cc-----------------chheEEEEec
Confidence 999988 6642111 11346789999999884210 0 00 012433 45
Q ss_pred cCCCceeeccccCCccc----c--ccceeEeeCCeEEEEEeeeccc------------------eeeEEEEEEeCCCCCe
Q 038464 268 LTQKSFTEYPRLLPVFS----E--YSIDVVECRGELLVVVLSEFLE------------------SASLRVWRFDQDNGFW 323 (404)
Q Consensus 268 ~~~~~w~~i~~~~p~~~----~--~~~~lv~~~g~L~~v~~~~~~~------------------~~~~~vw~l~~~~~~W 323 (404)
++++.|..++ ++|... . ..+..+..+|+||++++..... ...+++| +.++++|
T Consensus 226 ~~~~~W~~~~-~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~y--d~~~~~W 302 (346)
T TIGR03547 226 GGKLEWNKLP-PLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVY--ALDNGKW 302 (346)
T ss_pred CCCceeeecC-CCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEE--EecCCcc
Confidence 5778999885 354321 0 1233677899999999863100 1234555 5556699
Q ss_pred EEeccCChhHHHHhccCcceEEEEecCCEEEEEEe
Q 038464 324 HQIAAMPPAMSHEFYGKKVDINCVAAGHQIFICFN 358 (404)
Q Consensus 324 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~ 358 (404)
+++..||.. +....++..+++|||+..
T Consensus 303 ~~~~~lp~~--------~~~~~~~~~~~~iyv~GG 329 (346)
T TIGR03547 303 SKVGKLPQG--------LAYGVSVSWNNGVLLIGG 329 (346)
T ss_pred cccCCCCCC--------ceeeEEEEcCCEEEEEec
Confidence 999999842 122334567999998654
No 19
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.68 E-value=7.4e-15 Score=136.62 Aligned_cols=212 Identities=9% Similarity=0.035 Sum_probs=140.2
Q ss_pred ceeeccCCCCCCCeeEEEecCceEEEEeC------CCeEEEEcCCCCCe----eeCCCCCCCCCCCceeEEEEEecCCCC
Q 038464 94 TWKELNFPNSSPDSIPVAASGGLVCFRTA------SGKFIVSNPVTGSS----RELPPLDADTENQSLHAIVMTTSSKNP 163 (404)
Q Consensus 94 ~w~~l~~p~~~~~~~~~~s~~Glv~~~~~------~~~~~v~NP~t~~w----~~lP~~~~~~~~~~~~~~~~~g~~~~~ 163 (404)
+|..++..+.++.....++.++.|++.++ .+.++.+|+.+++| ..+|+++. .+..++++.+
T Consensus 52 ~W~~~~~lp~~r~~~~~~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~---~~~~~~~~~~------ 122 (323)
T TIGR03548 52 KWVKDGQLPYEAAYGASVSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPF---TFENGSACYK------ 122 (323)
T ss_pred eEEEcccCCccccceEEEEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCc---CccCceEEEE------
Confidence 68887765555544456677888888876 25788999999987 78898884 3334555554
Q ss_pred CceEEEEEeccc---CceEEEEEeCCCCceeecccccccccccccccccCCccccCCeEEEeecCCceeeecccCCCccc
Q 038464 164 SNYKLVLVYGEL---PKLSFKVYNSCLNCWEEETLLLSRKSEQALEVDSIDHHDDEDAVYFLSKAGNVVATNMQRSPSKQ 240 (404)
Q Consensus 164 ~~~kv~~~~g~~---~~~~~~vy~~~~~~W~~~~~~~p~~~~~~~~~~~~~~v~~~G~ly~~~~~~~~~~~~~~~~~~~~ 240 (404)
+.+||++||.. ....+++||+.+++|+.++. +|..+... ...+.++++||++||.....
T Consensus 123 -~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~-~p~~~r~~-----~~~~~~~~~iYv~GG~~~~~----------- 184 (323)
T TIGR03548 123 -DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPD-FPGEPRVQ-----PVCVKLQNELYVFGGGSNIA----------- 184 (323)
T ss_pred -CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCC-CCCCCCCc-----ceEEEECCEEEEEcCCCCcc-----------
Confidence 46899998752 23579999999999999987 55321110 12467899999998853100
Q ss_pred ccceeeecCCceEEEEeccCCeEEEEecCCCceeecccc----CCccccccceeEeeCCeEEEEEeeeccce--------
Q 038464 241 YSSVITSKDGEEIVYFLNSCGTIVACNLTQKSFTEYPRL----LPVFSEYSIDVVECRGELLVVVLSEFLES-------- 308 (404)
Q Consensus 241 ~~~~~~~~~~~~~~y~~~~~~~i~~fD~~~~~w~~i~~~----~p~~~~~~~~lv~~~g~L~~v~~~~~~~~-------- 308 (404)
...+.+||+++++|+.++.. .|........++..+++||++|+.+....
T Consensus 185 -------------------~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~ 245 (323)
T TIGR03548 185 -------------------YTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLA 245 (323)
T ss_pred -------------------ccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhh
Confidence 01468999999999988531 22221112334556899999998642100
Q ss_pred -----------------------eeEEEEEEeCCCCCeEEeccCChhHHHHhccCcceEEEEecCCEEEEEEe
Q 038464 309 -----------------------ASLRVWRFDQDNGFWHQIAAMPPAMSHEFYGKKVDINCVAAGHQIFICFN 358 (404)
Q Consensus 309 -----------------------~~~~vw~l~~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~ 358 (404)
..-.|+.+|..+++|+.+..+|.. .+....++..++.||++..
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~-------~r~~~~~~~~~~~iyv~GG 311 (323)
T TIGR03548 246 TMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPFF-------ARCGAALLLTGNNIFSING 311 (323)
T ss_pred hccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEccccccc-------ccCchheEEECCEEEEEec
Confidence 012488889988899999988632 1112234567889987643
No 20
>PLN02193 nitrile-specifier protein
Probab=99.63 E-value=1.2e-13 Score=134.36 Aligned_cols=201 Identities=11% Similarity=0.140 Sum_probs=139.0
Q ss_pred eeeeecCCCceeeccCC---CC-CCCeeEEEecCceEEEEeC------CCeEEEEcCCCCCeeeCCCCCCCCCCCceeEE
Q 038464 85 SIVFDSAEKTWKELNFP---NS-SPDSIPVAASGGLVCFRTA------SGKFIVSNPVTGSSRELPPLDADTENQSLHAI 154 (404)
Q Consensus 85 ~~~~d~~~~~w~~l~~p---~~-~~~~~~~~s~~Glv~~~~~------~~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~ 154 (404)
...||+.+++|..++.. +. .+....+++.++.|++.++ .+.+++|||.+++|..++++...+..+..+++
T Consensus 195 v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~ 274 (470)
T PLN02193 195 LYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSM 274 (470)
T ss_pred EEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEE
Confidence 56899999999977542 11 1223446778899998876 25789999999999999988422234555655
Q ss_pred EEEecCCCCCceEEEEEecccC---ceEEEEEeCCCCceeecccc--ccc-ccccccccccCCccccCCeEEEeecCCce
Q 038464 155 VMTTSSKNPSNYKLVLVYGELP---KLSFKVYNSCLNCWEEETLL--LSR-KSEQALEVDSIDHHDDEDAVYFLSKAGNV 228 (404)
Q Consensus 155 ~~~g~~~~~~~~kv~~~~g~~~---~~~~~vy~~~~~~W~~~~~~--~p~-~~~~~~~~~~~~~v~~~G~ly~~~~~~~~ 228 (404)
+.. +.+||++||... ...+++||+.+++|+.++.. .+. +..+ ..+.++|++|+++|..+-
T Consensus 275 ~~~-------~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~-------~~~~~~gkiyviGG~~g~ 340 (470)
T PLN02193 275 AAD-------EENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGA-------GLEVVQGKVWVVYGFNGC 340 (470)
T ss_pred EEE-------CCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCc-------EEEEECCcEEEEECCCCC
Confidence 554 467999987532 35789999999999988641 111 1111 346789999999874210
Q ss_pred eeecccCCCcccccceeeecCCceEEEEeccCCeEEEEecCCCceeecccc--CCccccccceeEeeCCeEEEEEeeecc
Q 038464 229 VATNMQRSPSKQYSSVITSKDGEEIVYFLNSCGTIVACNLTQKSFTEYPRL--LPVFSEYSIDVVECRGELLVVVLSEFL 306 (404)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~i~~fD~~~~~w~~i~~~--~p~~~~~~~~lv~~~g~L~~v~~~~~~ 306 (404)
. .+.+..||+++++|+.++.. .|... ..+..+..+++||++++....
T Consensus 341 -----------~-------------------~~dv~~yD~~t~~W~~~~~~g~~P~~R-~~~~~~~~~~~iyv~GG~~~~ 389 (470)
T PLN02193 341 -----------E-------------------VDDVHYYDPVQDKWTQVETFGVRPSER-SVFASAAVGKHIVIFGGEIAM 389 (470)
T ss_pred -----------c-------------------cCceEEEECCCCEEEEeccCCCCCCCc-ceeEEEEECCEEEEECCccCC
Confidence 0 12689999999999988531 23222 235667889999999986321
Q ss_pred --------ceeeEEEEEEeCCCCCeEEeccCC
Q 038464 307 --------ESASLRVWRFDQDNGFWHQIAAMP 330 (404)
Q Consensus 307 --------~~~~~~vw~l~~~~~~W~~v~~~~ 330 (404)
....-++|.+|..+++|+++..++
T Consensus 390 ~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~ 421 (470)
T PLN02193 390 DPLAHVGPGQLTDGTFALDTETLQWERLDKFG 421 (470)
T ss_pred ccccccCccceeccEEEEEcCcCEEEEcccCC
Confidence 112236999999999999998765
No 21
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.39 E-value=5.5e-11 Score=101.12 Aligned_cols=233 Identities=13% Similarity=0.169 Sum_probs=146.5
Q ss_pred eeeecCCCceeeccCCC-----------CC--CCeeEEEecCceEEEEeCC-------CeEEEEcCCCCCeeeCCCCCCC
Q 038464 86 IVFDSAEKTWKELNFPN-----------SS--PDSIPVAASGGLVCFRTAS-------GKFIVSNPVTGSSRELPPLDAD 145 (404)
Q Consensus 86 ~~~d~~~~~w~~l~~p~-----------~~--~~~~~~~s~~Glv~~~~~~-------~~~~v~NP~t~~w~~lP~~~~~ 145 (404)
.+++..+-+|.++|.-. .+ +....+....+.+++-++. +.++.|||.|++|....--..-
T Consensus 47 H~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~v 126 (392)
T KOG4693|consen 47 HVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFV 126 (392)
T ss_pred EEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEEEEcCccCcccccceeeeeccccccccccceeeec
Confidence 36677777898887511 11 1223466677888887762 3578999999999865444333
Q ss_pred CCCCceeEEEEEecCCCCCceEEEEEecccC-----ceEEEEEeCCCCceeecccc-cccccccccccccCCccccCCeE
Q 038464 146 TENQSLHAIVMTTSSKNPSNYKLVLVYGELP-----KLSFKVYNSCLNCWEEETLL-LSRKSEQALEVDSIDHHDDEDAV 219 (404)
Q Consensus 146 ~~~~~~~~~~~~g~~~~~~~~kv~~~~g~~~-----~~~~~vy~~~~~~W~~~~~~-~p~~~~~~~~~~~~~~v~~~G~l 219 (404)
+..+..|..++.| -..+++||... ...++++|..|-.|+.+... -|.+-.+ |+ .++.++|.+
T Consensus 127 PgaRDGHsAcV~g-------n~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRD---FH--~a~~~~~~M 194 (392)
T KOG4693|consen 127 PGARDGHSACVWG-------NQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWRD---FH--TASVIDGMM 194 (392)
T ss_pred CCccCCceeeEEC-------cEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchhhh---hh--hhhhccceE
Confidence 3455556555554 44667776421 24699999999999998763 2322111 11 356788999
Q ss_pred EEeecCCceeeecccCCCcccccceeeecCCceEEEEeccCCeEEEEecCCCceeeccc-c-CCccccccceeEeeCCeE
Q 038464 220 YFLSKAGNVVATNMQRSPSKQYSSVITSKDGEEIVYFLNSCGTIVACNLTQKSFTEYPR-L-LPVFSEYSIDVVECRGEL 297 (404)
Q Consensus 220 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~i~~fD~~~~~w~~i~~-~-~p~~~~~~~~lv~~~g~L 297 (404)
|+++|.++ ....|++. .-.| .+.|..+|++++.|..-+. . .|. +..++....++|++
T Consensus 195 YiFGGR~D---------~~gpfHs~-------~e~Y----c~~i~~ld~~T~aW~r~p~~~~~P~-GRRSHS~fvYng~~ 253 (392)
T KOG4693|consen 195 YIFGGRSD---------ESGPFHSI-------HEQY----CDTIMALDLATGAWTRTPENTMKPG-GRRSHSTFVYNGKM 253 (392)
T ss_pred EEeccccc---------cCCCccch-------hhhh----cceeEEEeccccccccCCCCCcCCC-cccccceEEEcceE
Confidence 99998643 11233321 1111 2479999999999996532 1 233 33467788999999
Q ss_pred EEEEeee-ccceeeEEEEEEeCCCCCeEEeccCChhHHHHhccCcceEEEEecCCEEEEE
Q 038464 298 LVVVLSE-FLESASLRVWRFDQDNGFWHQIAAMPPAMSHEFYGKKVDINCVAAGHQIFIC 356 (404)
Q Consensus 298 ~~v~~~~-~~~~~~~~vw~l~~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 356 (404)
|+++++. ......-++|.+|+.+..|.++..-..-. . ..+++. ++..++++|+.
T Consensus 254 Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P--~--aRRRqC-~~v~g~kv~LF 308 (392)
T KOG4693|consen 254 YMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKYP--S--ARRRQC-SVVSGGKVYLF 308 (392)
T ss_pred EEecccchhhhhhhcceeecccccchheeeeccCCCC--C--ccccee-EEEECCEEEEe
Confidence 9999975 22345567999999988999986433110 0 112222 33457788754
No 22
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.17 E-value=2.8e-09 Score=90.90 Aligned_cols=212 Identities=11% Similarity=0.080 Sum_probs=135.7
Q ss_pred CCeEEEEcCCCCCeeeCCCCCCC----------CCCCceeEEEEEecCCCCCceEEEEEecccC----ceEEEEEeCCCC
Q 038464 123 SGKFIVSNPVTGSSRELPPLDAD----------TENQSLHAIVMTTSSKNPSNYKLVLVYGELP----KLSFKVYNSCLN 188 (404)
Q Consensus 123 ~~~~~v~NP~t~~w~~lP~~~~~----------~~~~~~~~~~~~g~~~~~~~~kv~~~~g~~~----~~~~~vy~~~~~ 188 (404)
+-.+.++|..+-.|..+||-... +..+..|.++.. ..|+++-||.+. -+....||++++
T Consensus 43 piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y-------~d~~yvWGGRND~egaCN~Ly~fDp~t~ 115 (392)
T KOG4693|consen 43 PIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEY-------QDKAYVWGGRNDDEGACNLLYEFDPETN 115 (392)
T ss_pred cceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEE-------cceEEEEcCccCcccccceeeeeccccc
Confidence 45789999999999999983210 011222333333 467888877643 257899999999
Q ss_pred ceeecccc--ccc-ccccccccccCCccccCCeEEEeecCCceeeecccCCCcccccceeeecCCceEEEEeccCCeEEE
Q 038464 189 CWEEETLL--LSR-KSEQALEVDSIDHHDDEDAVYFLSKAGNVVATNMQRSPSKQYSSVITSKDGEEIVYFLNSCGTIVA 265 (404)
Q Consensus 189 ~W~~~~~~--~p~-~~~~~~~~~~~~~v~~~G~ly~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~i~~ 265 (404)
.|+..... +|. +..| .+++.++.+|+++|... ....| +..+..
T Consensus 116 ~W~~p~v~G~vPgaRDGH-------sAcV~gn~MyiFGGye~---------~a~~F------------------S~d~h~ 161 (392)
T KOG4693|consen 116 VWKKPEVEGFVPGARDGH-------SACVWGNQMYIFGGYEE---------DAQRF------------------SQDTHV 161 (392)
T ss_pred cccccceeeecCCccCCc-------eeeEECcEEEEecChHH---------HHHhh------------------hcccee
Confidence 99987642 554 3233 34678888999988531 00112 236899
Q ss_pred EecCCCceeecccc-CCccccccceeEeeCCeEEEEEeeecc--------ceeeEEEEEEeCCCCCeEEeccCChhHHHH
Q 038464 266 CNLTQKSFTEYPRL-LPVFSEYSIDVVECRGELLVVVLSEFL--------ESASLRVWRFDQDNGFWHQIAAMPPAMSHE 336 (404)
Q Consensus 266 fD~~~~~w~~i~~~-~p~~~~~~~~lv~~~g~L~~v~~~~~~--------~~~~~~vw~l~~~~~~W~~v~~~~~~~~~~ 336 (404)
+|+++.+|+.+... .|+.-...+..+..+|..|++++..+. ....-+|-.||..++.|.+-..-+ +
T Consensus 162 ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~--~--- 236 (392)
T KOG4693|consen 162 LDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENT--M--- 236 (392)
T ss_pred EeccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCC--c---
Confidence 99999999998543 233211123446678999999986321 122344666777777999874332 1
Q ss_pred hccCcceEEEEecCCEEEEEEec-C----CCceEEEEECCCCceEECCC
Q 038464 337 FYGKKVDINCVAAGHQIFICFNS-A----ELFSYVLCDLVTNEWVELPK 380 (404)
Q Consensus 337 ~~~~~~~~~~~~~~~~i~v~~~~-~----~~~~~~~yd~~~~~w~~~~~ 380 (404)
..+.+++...++.++++|+...- + ..+.+.++|+++..|+.|..
T Consensus 237 ~P~GRRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~ 285 (392)
T KOG4693|consen 237 KPGGRRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISV 285 (392)
T ss_pred CCCcccccceEEEcceEEEecccchhhhhhhcceeecccccchheeeec
Confidence 11344455666788899865321 1 23678999999999998754
No 23
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.06 E-value=2.2e-08 Score=97.59 Aligned_cols=224 Identities=12% Similarity=0.076 Sum_probs=147.1
Q ss_pred EEecCceEEEEeC------CC--eEEEEcCCCCCeeeCCCCCCCCCCCceeEEEEEecCCCCCceEEEEEecccC----c
Q 038464 110 VAASGGLVCFRTA------SG--KFIVSNPVTGSSRELPPLDADTENQSLHAIVMTTSSKNPSNYKLVLVYGELP----K 177 (404)
Q Consensus 110 ~~s~~Glv~~~~~------~~--~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~g~~~~~~~~kv~~~~g~~~----~ 177 (404)
....+.-+++.++ .. +++++|..+..|...+.-...+..+..+.++.++ -+++.+||... .
T Consensus 66 ~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~-------~~l~lfGG~~~~~~~~ 138 (482)
T KOG0379|consen 66 AVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVG-------DKLYLFGGTDKKYRNL 138 (482)
T ss_pred eeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEEC-------CeEEEEccccCCCCCh
Confidence 3344666666554 22 4999999999998776655333344455555553 67888887631 2
Q ss_pred eEEEEEeCCCCceeecccc--ccc-ccccccccccCCccccCCeEEEeecCCceeeecccCCCcccccceeeecCCceEE
Q 038464 178 LSFKVYNSCLNCWEEETLL--LSR-KSEQALEVDSIDHHDDEDAVYFLSKAGNVVATNMQRSPSKQYSSVITSKDGEEIV 254 (404)
Q Consensus 178 ~~~~vy~~~~~~W~~~~~~--~p~-~~~~~~~~~~~~~v~~~G~ly~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (404)
..++.||..++.|+..... .|. +..| ..+..+.++|+.||.+..-.
T Consensus 139 ~~l~~~d~~t~~W~~l~~~~~~P~~r~~H-------s~~~~g~~l~vfGG~~~~~~------------------------ 187 (482)
T KOG0379|consen 139 NELHSLDLSTRTWSLLSPTGDPPPPRAGH-------SATVVGTKLVVFGGIGGTGD------------------------ 187 (482)
T ss_pred hheEeccCCCCcEEEecCcCCCCCCcccc-------eEEEECCEEEEECCccCccc------------------------
Confidence 5899999999999988752 122 2222 34667788999988643110
Q ss_pred EEeccCCeEEEEecCCCceeecccc--CCccccccceeEeeCCeEEEEEeeeccceeeEEEEEEeCCCCCeEEeccCChh
Q 038464 255 YFLNSCGTIVACNLTQKSFTEYPRL--LPVFSEYSIDVVECRGELLVVVLSEFLESASLRVWRFDQDNGFWHQIAAMPPA 332 (404)
Q Consensus 255 y~~~~~~~i~~fD~~~~~w~~i~~~--~p~~~~~~~~lv~~~g~L~~v~~~~~~~~~~~~vw~l~~~~~~W~~v~~~~~~ 332 (404)
..+.+..||+++.+|..+... .|... +.+.++..++++++++|........-++|.||..+.+|.++...+.-
T Consensus 188 ----~~ndl~i~d~~~~~W~~~~~~g~~P~pR-~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~ 262 (482)
T KOG0379|consen 188 ----SLNDLHIYDLETSTWSELDTQGEAPSPR-YGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDL 262 (482)
T ss_pred ----ceeeeeeeccccccceecccCCCCCCCC-CCceEEEECCeEEEEeccccCCceecceEeeecccceeeeccccCCC
Confidence 123699999999999987432 23322 45778899999999998753445667899999988899976544321
Q ss_pred HHHHhccCcceEEEEecCCEEEEEEecCC-----CceEEEEECCCCceEECCCC
Q 038464 333 MSHEFYGKKVDINCVAAGHQIFICFNSAE-----LFSYVLCDLVTNEWVELPKC 381 (404)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~i~v~~~~~~-----~~~~~~yd~~~~~w~~~~~~ 381 (404)
...+..+..+..++.++|...... ...+..||+.+..|.++...
T Consensus 263 -----p~~R~~h~~~~~~~~~~l~gG~~~~~~~~l~~~~~l~~~~~~w~~~~~~ 311 (482)
T KOG0379|consen 263 -----PSPRSGHSLTVSGDHLLLFGGGTDPKQEPLGDLYGLDLETLVWSKVESV 311 (482)
T ss_pred -----CCCcceeeeEEECCEEEEEcCCcccccccccccccccccccceeeeecc
Confidence 122222333455777766543322 35678899999999887654
No 24
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.03 E-value=1.5e-08 Score=98.84 Aligned_cols=205 Identities=13% Similarity=0.116 Sum_probs=140.0
Q ss_pred eeeeecCCCceeeccC---CCCCCCeeEEEecCceEEEEeCC-------CeEEEEcCCCCCeeeCCCCCCCCCCCceeEE
Q 038464 85 SIVFDSAEKTWKELNF---PNSSPDSIPVAASGGLVCFRTAS-------GKFIVSNPVTGSSRELPPLDADTENQSLHAI 154 (404)
Q Consensus 85 ~~~~d~~~~~w~~l~~---p~~~~~~~~~~s~~Glv~~~~~~-------~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~ 154 (404)
.+.+|..+..|..... .+.++....+++.+..+++.++. .+++.+|+.|++|..+.+...++..+..|++
T Consensus 90 l~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~ 169 (482)
T KOG0379|consen 90 LYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSA 169 (482)
T ss_pred eEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccceE
Confidence 5677888888875432 12233445566777777777762 3899999999999998887764456667777
Q ss_pred EEEecCCCCCceEEEEEeccc----CceEEEEEeCCCCceeecccccccccccccccccCCccccCCeEEEeecCC-cee
Q 038464 155 VMTTSSKNPSNYKLVLVYGEL----PKLSFKVYNSCLNCWEEETLLLSRKSEQALEVDSIDHHDDEDAVYFLSKAG-NVV 229 (404)
Q Consensus 155 ~~~g~~~~~~~~kv~~~~g~~----~~~~~~vy~~~~~~W~~~~~~~p~~~~~~~~~~~~~~v~~~G~ly~~~~~~-~~~ 229 (404)
+..| -||+++||.. ..+.+++||.++..|..+... ...|. |..+...+..++.+++++|.. +-.
T Consensus 170 ~~~g-------~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~-g~~P~---pR~gH~~~~~~~~~~v~gG~~~~~~ 238 (482)
T KOG0379|consen 170 TVVG-------TKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQ-GEAPS---PRYGHAMVVVGNKLLVFGGGDDGDV 238 (482)
T ss_pred EEEC-------CEEEEECCccCcccceeeeeeeccccccceecccC-CCCCC---CCCCceEEEECCeEEEEeccccCCc
Confidence 6664 6788888752 246899999999999998762 11111 122224578888888887754 111
Q ss_pred eecccCCCcccccceeeecCCceEEEEeccCCeEEEEecCCCceeeccc--cCCccccccceeEeeCCeEEEEEeeeccc
Q 038464 230 ATNMQRSPSKQYSSVITSKDGEEIVYFLNSCGTIVACNLTQKSFTEYPR--LLPVFSEYSIDVVECRGELLVVVLSEFLE 307 (404)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~i~~fD~~~~~w~~i~~--~~p~~~~~~~~lv~~~g~L~~v~~~~~~~ 307 (404)
. .+.+..||+.+.+|..+.. ..|..+ ..+.++..+.+++++++.....
T Consensus 239 ~-----------------------------l~D~~~ldl~~~~W~~~~~~g~~p~~R-~~h~~~~~~~~~~l~gG~~~~~ 288 (482)
T KOG0379|consen 239 Y-----------------------------LNDVHILDLSTWEWKLLPTGGDLPSPR-SGHSLTVSGDHLLLFGGGTDPK 288 (482)
T ss_pred e-----------------------------ecceEeeecccceeeeccccCCCCCCc-ceeeeEEECCEEEEEcCCcccc
Confidence 1 1258899999999996531 223322 3456777788999998865322
Q ss_pred e-eeEEEEEEeCCCCCeEEeccCC
Q 038464 308 S-ASLRVWRFDQDNGFWHQIAAMP 330 (404)
Q Consensus 308 ~-~~~~vw~l~~~~~~W~~v~~~~ 330 (404)
. ..-++|.|+.++..|.++....
T Consensus 289 ~~~l~~~~~l~~~~~~w~~~~~~~ 312 (482)
T KOG0379|consen 289 QEPLGDLYGLDLETLVWSKVESVG 312 (482)
T ss_pred cccccccccccccccceeeeeccc
Confidence 2 4567899999888999998777
No 25
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.02 E-value=4.7e-09 Score=83.60 Aligned_cols=70 Identities=23% Similarity=0.451 Sum_probs=52.5
Q ss_pred eEEEEecCCCceeecccc-CCccccccceeEeeCCeEEEEEeeeccceeeEEEEEEeC-CCCCeEEecc-CCh
Q 038464 262 TIVACNLTQKSFTEYPRL-LPVFSEYSIDVVECRGELLVVVLSEFLESASLRVWRFDQ-DNGFWHQIAA-MPP 331 (404)
Q Consensus 262 ~i~~fD~~~~~w~~i~~~-~p~~~~~~~~lv~~~g~L~~v~~~~~~~~~~~~vw~l~~-~~~~W~~v~~-~~~ 331 (404)
.|++||+++|+|+.++.| .+........|++++|+|+++..........++||.|++ ++.+|++... +|.
T Consensus 21 ~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~k~~Wsk~~~~lp~ 93 (129)
T PF08268_consen 21 VIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYEKQEWSKKHIVLPP 93 (129)
T ss_pred EEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeeccccceEEEEEEECCh
Confidence 799999999999998654 112222356899999999998865422245799999998 5678999865 554
No 26
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=98.97 E-value=3.6e-08 Score=89.14 Aligned_cols=209 Identities=12% Similarity=0.161 Sum_probs=131.1
Q ss_pred CeEEEEcCCCCCeeeCCCCCCCCCCCceeEEEEEecCCCCCceEEEEEeccc---------CceEEEEEeCCCCceeecc
Q 038464 124 GKFIVSNPVTGSSRELPPLDADTENQSLHAIVMTTSSKNPSNYKLVLVYGEL---------PKLSFKVYNSCLNCWEEET 194 (404)
Q Consensus 124 ~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~g~~~~~~~~kv~~~~g~~---------~~~~~~vy~~~~~~W~~~~ 194 (404)
+.++.||..+.+|+.+-.+..| .+|..|.++++. +..++.+||+. +.....+|+..++.|..+.
T Consensus 98 ndLy~Yn~k~~eWkk~~spn~P-~pRsshq~va~~------s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~ 170 (521)
T KOG1230|consen 98 NDLYSYNTKKNEWKKVVSPNAP-PPRSSHQAVAVP------SNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLE 170 (521)
T ss_pred eeeeEEeccccceeEeccCCCc-CCCccceeEEec------cCeEEEeccccCCcchhhhhhhhheeeeeeccchheeec
Confidence 4789999999999977544432 245555555543 23567777752 1246999999999999997
Q ss_pred cc-ccc-ccccccccccCCccccCCeEEEeecCCceeeecccCCCcccccceeeecCCceEEEEeccCCeEEEEecCCCc
Q 038464 195 LL-LSR-KSEQALEVDSIDHHDDEDAVYFLSKAGNVVATNMQRSPSKQYSSVITSKDGEEIVYFLNSCGTIVACNLTQKS 272 (404)
Q Consensus 195 ~~-~p~-~~~~~~~~~~~~~v~~~G~ly~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~i~~fD~~~~~ 272 (404)
.. -|. +.+| .+|.....+.++||-- |.. ++..|+ +.+.+||+.+=+
T Consensus 171 ~~g~PS~RSGH-------RMvawK~~lilFGGFh-----d~n----------------r~y~Yy----NDvy~FdLdtyk 218 (521)
T KOG1230|consen 171 FGGGPSPRSGH-------RMVAWKRQLILFGGFH-----DSN----------------RDYIYY----NDVYAFDLDTYK 218 (521)
T ss_pred cCCCCCCCccc-------eeEEeeeeEEEEccee-----cCC----------------CceEEe----eeeEEEecccee
Confidence 53 222 2233 3466677776777631 111 233343 479999999999
Q ss_pred eeeccccC--CccccccceeEee-CCeEEEEEeee--------ccceeeEEEEEEeCCC-----CCeEEeccCChhHHHH
Q 038464 273 FTEYPRLL--PVFSEYSIDVVEC-RGELLVVVLSE--------FLESASLRVWRFDQDN-----GFWHQIAAMPPAMSHE 336 (404)
Q Consensus 273 w~~i~~~~--p~~~~~~~~lv~~-~g~L~~v~~~~--------~~~~~~~~vw~l~~~~-----~~W~~v~~~~~~~~~~ 336 (404)
|..+...= |..+ ..+++... .|.+++.||+. +.+..+-+.|.|+++. ..|+++.......
T Consensus 219 W~Klepsga~PtpR-SGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kP--- 294 (521)
T KOG1230|consen 219 WSKLEPSGAGPTPR-SGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKP--- 294 (521)
T ss_pred eeeccCCCCCCCCC-CcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCC---
Confidence 99884311 2222 23566666 99999999873 1235678899998854 6799997665321
Q ss_pred hccCcceEEEE-ecCCEEEEEEec--C-----------CCceEEEEECCCCceEEC
Q 038464 337 FYGKKVDINCV-AAGHQIFICFNS--A-----------ELFSYVLCDLVTNEWVEL 378 (404)
Q Consensus 337 ~~~~~~~~~~~-~~~~~i~v~~~~--~-----------~~~~~~~yd~~~~~w~~~ 378 (404)
.-+..+.|+ +..++.+++ ++ + ..+.++.||+..++|...
T Consensus 295 --spRsgfsv~va~n~kal~F-GGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~ 347 (521)
T KOG1230|consen 295 --SPRSGFSVAVAKNHKALFF-GGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEG 347 (521)
T ss_pred --CCCCceeEEEecCCceEEe-cceecccccchhhhhhhhhhhhheecccchhhHh
Confidence 112233343 344455432 22 0 024678999999999764
No 27
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.82 E-value=3.1e-09 Score=68.13 Aligned_cols=40 Identities=33% Similarity=0.766 Sum_probs=35.2
Q ss_pred cccChHHHHHHHHhcCChhhhhHhhhcchhhhhccCChhH
Q 038464 22 MEELNQDLLERVLSWLPTSTFFRLSSVCKRWKSVADSPSF 61 (404)
Q Consensus 22 ~~~LP~dll~~Il~rLp~~~l~r~~~Vck~W~~li~~~~F 61 (404)
|..||+|++.+||+.|+..++.+++.|||.|++++.++.+
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~l 40 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSL 40 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhh
Confidence 6789999999999999999999999999999999987743
No 28
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=98.73 E-value=2.5e-07 Score=76.93 Aligned_cols=113 Identities=12% Similarity=0.331 Sum_probs=69.3
Q ss_pred eEEEEecCCCce-eeccccCCcccc---ccceeEe-eCCeEEEEEeeeccceeeEEEEEEeC---CCCCeEEeccCChhH
Q 038464 262 TIVACNLTQKSF-TEYPRLLPVFSE---YSIDVVE-CRGELLVVVLSEFLESASLRVWRFDQ---DNGFWHQIAAMPPAM 333 (404)
Q Consensus 262 ~i~~fD~~~~~w-~~i~~~~p~~~~---~~~~lv~-~~g~L~~v~~~~~~~~~~~~vw~l~~---~~~~W~~v~~~~~~~ 333 (404)
.|++||+.+|++ ..++ +|.... ....|.. .+|+|+++.... ....++||.|++ ...+|+|+..++...
T Consensus 22 ~IlsFDl~~E~F~~~~~--lP~~~~~~~~~~~L~~v~~~~L~~~~~~~--~~~~~~IWvm~~~~~~~~SWtK~~~i~~~~ 97 (164)
T PF07734_consen 22 FILSFDLSTEKFGRSLP--LPFCNDDDDDSVSLSVVRGDCLCVLYQCD--ETSKIEIWVMKKYGYGKESWTKLFTIDLPP 97 (164)
T ss_pred EEEEEeccccccCCEEC--CCCccCccCCEEEEEEecCCEEEEEEecc--CCccEEEEEEeeeccCcceEEEEEEEecCC
Confidence 599999999999 6664 444322 2345644 478999986422 245699999995 367999998887432
Q ss_pred HHHhccC-cceEEEEecCCEEEEEEecCCC----ceEEEEECCCCceEECC
Q 038464 334 SHEFYGK-KVDINCVAAGHQIFICFNSAEL----FSYVLCDLVTNEWVELP 379 (404)
Q Consensus 334 ~~~~~~~-~~~~~~~~~~~~i~v~~~~~~~----~~~~~yd~~~~~w~~~~ 379 (404)
...+... .........++++.+++..... ..+.+|+ +.+..+++.
T Consensus 98 ~~~~~~~~~~~~~~i~~~~~vlv~~~~~~~~~~~~~i~i~g-~~~~~~~~~ 147 (164)
T PF07734_consen 98 LPSLFFHFRNPSFFIDEEKKVLVCCDKETQREEKNKIYIVG-EDGKFIEVD 147 (164)
T ss_pred CCCcccccccceEEEeCCCeEEEEEcCCCCccceeEEEEEc-CCCEEEEcc
Confidence 2221110 0112223456777776654222 5677887 666676665
No 29
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.72 E-value=5.8e-09 Score=67.34 Aligned_cols=45 Identities=36% Similarity=0.689 Sum_probs=38.1
Q ss_pred CcccChHHHHHHHHhcCChhhhhHhhhcchhhhhccCChhHHHHh
Q 038464 21 SMEELNQDLLERVLSWLPTSTFFRLSSVCKRWKSVADSPSFKLAC 65 (404)
Q Consensus 21 ~~~~LP~dll~~Il~rLp~~~l~r~~~Vck~W~~li~~~~F~~~~ 65 (404)
+|..||+|++.+||.+|+..++.+++.|||.|++++.++.+...+
T Consensus 2 ~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~ 46 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKI 46 (48)
T ss_dssp HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHH
T ss_pred CHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHH
Confidence 478899999999999999999999999999999999988776543
No 30
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.58 E-value=4e-08 Score=60.99 Aligned_cols=39 Identities=41% Similarity=0.773 Sum_probs=36.1
Q ss_pred ChHHHHHHHHhcCChhhhhHhhhcchhhhhccCChhHHH
Q 038464 25 LNQDLLERVLSWLPTSTFFRLSSVCKRWKSVADSPSFKL 63 (404)
Q Consensus 25 LP~dll~~Il~rLp~~~l~r~~~Vck~W~~li~~~~F~~ 63 (404)
||+|++.+|+++|+..++.++++|||+|+.++.++.+.+
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~ 39 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF 39 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 799999999999999999999999999999998876644
No 31
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=98.36 E-value=3.5e-05 Score=68.54 Aligned_cols=40 Identities=28% Similarity=0.535 Sum_probs=36.7
Q ss_pred cccCh----HHHHHHHHhcCChhhhhHhhhcchhhhhccCChhH
Q 038464 22 MEELN----QDLLERVLSWLPTSTFFRLSSVCKRWKSVADSPSF 61 (404)
Q Consensus 22 ~~~LP----~dll~~Il~rLp~~~l~r~~~Vck~W~~li~~~~F 61 (404)
+..|| +++.++||+.|...+|..+..|||+|+.+++++..
T Consensus 75 i~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~ 118 (499)
T KOG0281|consen 75 ITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGML 118 (499)
T ss_pred HHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchH
Confidence 45699 99999999999999999999999999999998744
No 32
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=98.08 E-value=0.00023 Score=65.13 Aligned_cols=171 Identities=12% Similarity=0.073 Sum_probs=102.5
Q ss_pred eEEEEEeCCCCceeecccccccccccccccccCCccccCCeEEEeecCCceeeecccCCCcccccceeeecCCceEEEEe
Q 038464 178 LSFKVYNSCLNCWEEETLLLSRKSEQALEVDSIDHHDDEDAVYFLSKAGNVVATNMQRSPSKQYSSVITSKDGEEIVYFL 257 (404)
Q Consensus 178 ~~~~vy~~~~~~W~~~~~~~p~~~~~~~~~~~~~~v~~~G~ly~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ 257 (404)
+.+.+|+..++.|+.+.++-+..+.. .++.+|.-.|.+|..||.-. .+. + .+ +|
T Consensus 98 ndLy~Yn~k~~eWkk~~spn~P~pRs----shq~va~~s~~l~~fGGEfa----SPn--q-------------~q-F~-- 151 (521)
T KOG1230|consen 98 NDLYSYNTKKNEWKKVVSPNAPPPRS----SHQAVAVPSNILWLFGGEFA----SPN--Q-------------EQ-FH-- 151 (521)
T ss_pred eeeeEEeccccceeEeccCCCcCCCc----cceeEEeccCeEEEeccccC----Ccc--h-------------hh-hh--
Confidence 56899999999999987641111111 12234555578877776421 000 0 00 11
Q ss_pred ccCCeEEEEecCCCceeeccccC-CccccccceeEeeCCeEEEEEeeeccc---eeeEEEEEEeCCCCCeEEeccCChhH
Q 038464 258 NSCGTIVACNLTQKSFTEYPRLL-PVFSEYSIDVVECRGELLVVVLSEFLE---SASLRVWRFDQDNGFWHQIAAMPPAM 333 (404)
Q Consensus 258 ~~~~~i~~fD~~~~~w~~i~~~~-p~~~~~~~~lv~~~g~L~~v~~~~~~~---~~~~~vw~l~~~~~~W~~v~~~~~~~ 333 (404)
+-..+..||+.+++|.++...- |..+ ..+.++.+..+|+++||-++.. ...-+||.++.++-+|+++.. +.-
T Consensus 152 -HYkD~W~fd~~trkweql~~~g~PS~R-SGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klep-sga- 227 (521)
T KOG1230|consen 152 -HYKDLWLFDLKTRKWEQLEFGGGPSPR-SGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEP-SGA- 227 (521)
T ss_pred -hhhheeeeeeccchheeeccCCCCCCC-ccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccC-CCC-
Confidence 1236888999999999984321 2212 3478999999999999865332 245679999999999999986 321
Q ss_pred HHHhccCcceEEEEecCCEEEEEEe-cC-----------CCceEEEEECCCC-----ceEECCC
Q 038464 334 SHEFYGKKVDINCVAAGHQIFICFN-SA-----------ELFSYVLCDLVTN-----EWVELPK 380 (404)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~i~v~~~-~~-----------~~~~~~~yd~~~~-----~w~~~~~ 380 (404)
.. .........+...+.|||+.+ +. ....++..+++.+ +|.++.+
T Consensus 228 ~P--tpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp 289 (521)
T KOG1230|consen 228 GP--TPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKP 289 (521)
T ss_pred CC--CCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccC
Confidence 00 012222334455777876532 10 1245677777772 4666655
No 33
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=98.08 E-value=9e-05 Score=69.41 Aligned_cols=232 Identities=15% Similarity=0.185 Sum_probs=114.8
Q ss_pred EecCceEEEEeC-----CCeEEEEcCCCCCeeeCCCCCCCCCCCceeEEEEEecCCCCCceEEEEEecc--cCceEEEEE
Q 038464 111 AASGGLVCFRTA-----SGKFIVSNPVTGSSRELPPLDADTENQSLHAIVMTTSSKNPSNYKLVLVYGE--LPKLSFKVY 183 (404)
Q Consensus 111 ~s~~Glv~~~~~-----~~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~g~~~~~~~~kv~~~~g~--~~~~~~~vy 183 (404)
.+..-|+.+.++ ..++.+||..|++|.. |...- . ...+++.+|+- .+.-||+++||. ....+=+.|
T Consensus 39 VaikELiviFGGGNEGiiDELHvYNTatnqWf~-PavrG---D-iPpgcAA~Gfv--cdGtrilvFGGMvEYGkYsNdLY 111 (830)
T KOG4152|consen 39 VAIKELIVIFGGGNEGIIDELHVYNTATNQWFA-PAVRG---D-IPPGCAAFGFV--CDGTRILVFGGMVEYGKYSNDLY 111 (830)
T ss_pred eeeeeeEEEecCCcccchhhhhhhccccceeec-chhcC---C-CCCchhhcceE--ecCceEEEEccEeeeccccchHH
Confidence 334455555554 4578999999999973 33220 0 00112233322 235789999875 234566777
Q ss_pred eCCCCce--eecccccccccccccccccCCccccCCeEEEeecCCceeeecccCCCcccccceeeecCCceEEEEeccC-
Q 038464 184 NSCLNCW--EEETLLLSRKSEQALEVDSIDHHDDEDAVYFLSKAGNVVATNMQRSPSKQYSSVITSKDGEEIVYFLNSC- 260 (404)
Q Consensus 184 ~~~~~~W--~~~~~~~p~~~~~~~~~~~~~~v~~~G~ly~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~- 260 (404)
.+....| +.+...-|....-.||.-+..-....++.|++||-.+- .-|+.+. -..|-. -+|.+...
T Consensus 112 ELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNd-seDpknN-vPrYLn---------DlY~leL~~ 180 (830)
T KOG4152|consen 112 ELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLAND-SEDPKNN-VPRYLN---------DLYILELRP 180 (830)
T ss_pred HhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEecccccc-ccCcccc-cchhhc---------ceEEEEecc
Confidence 7777665 44443211100001121111114566889999874321 0011110 011211 13333211
Q ss_pred -CeEEEEecCCCceeeccccCCccccccceeEee------CCeEEEEEeeeccceeeEEEEEEeCCCCCeEEec-----c
Q 038464 261 -GTIVACNLTQKSFTEYPRLLPVFSEYSIDVVEC------RGELLVVVLSEFLESASLRVWRFDQDNGFWHQIA-----A 328 (404)
Q Consensus 261 -~~i~~fD~~~~~w~~i~~~~p~~~~~~~~lv~~------~g~L~~v~~~~~~~~~~~~vw~l~~~~~~W~~v~-----~ 328 (404)
..++..|.-. . ....|..++ ++..|.+ ..++++.++.. +...=++|.||.++..|.+.. .
T Consensus 181 Gsgvv~W~ip~-t----~Gv~P~pRE-SHTAViY~eKDs~~skmvvyGGM~--G~RLgDLW~Ldl~Tl~W~kp~~~G~~P 252 (830)
T KOG4152|consen 181 GSGVVAWDIPI-T----YGVLPPPRE-SHTAVIYTEKDSKKSKMVVYGGMS--GCRLGDLWTLDLDTLTWNKPSLSGVAP 252 (830)
T ss_pred CCceEEEeccc-c----cCCCCCCcc-cceeEEEEeccCCcceEEEEcccc--cccccceeEEecceeecccccccCCCC
Confidence 2333333211 0 122343332 2333333 23677766542 244556999999999999853 3
Q ss_pred CChhHHHHhccCcceEEEEecCCEEEEEEe------cC-----------CCceEEEEECCCCceEEC
Q 038464 329 MPPAMSHEFYGKKVDINCVAAGHQIFICFN------SA-----------ELFSYVLCDLVTNEWVEL 378 (404)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~------~~-----------~~~~~~~yd~~~~~w~~~ 378 (404)
||..++ ..+.+||++||+.. .. ....+.++|+++.+|+.+
T Consensus 253 lPRSLH----------sa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl 309 (830)
T KOG4152|consen 253 LPRSLH----------SATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETL 309 (830)
T ss_pred CCcccc----------cceeecceeEEecceeeeeccccccccccceeeeccceeeeeecchheeee
Confidence 442221 24456777776321 00 124677899999999764
No 34
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=97.94 E-value=0.0002 Score=67.18 Aligned_cols=253 Identities=13% Similarity=0.156 Sum_probs=129.1
Q ss_pred hhhhccCC--hh--HHHHhhcCCCCCCeEEEEcCCC----CceeeeecCCCceee------ccCCCCCCCeeEEEecCce
Q 038464 51 RWKSVADS--PS--FKLACSQIPSRDPWFLMVDHQL----NHSIVFDSAEKTWKE------LNFPNSSPDSIPVAASGGL 116 (404)
Q Consensus 51 ~W~~li~~--~~--F~~~~~~~~~~~p~~~~~~~~~----~~~~~~d~~~~~w~~------l~~p~~~~~~~~~~s~~Gl 116 (404)
+||.+.+. |. -++-|+...- .-++++|...+ .+..+|+...++|+. +|.+... +-..+.+..
T Consensus 18 rWrrV~~~tGPvPrpRHGHRAVai-kELiviFGGGNEGiiDELHvYNTatnqWf~PavrGDiPpgcAA---~GfvcdGtr 93 (830)
T KOG4152|consen 18 RWRRVQQSTGPVPRPRHGHRAVAI-KELIVIFGGGNEGIIDELHVYNTATNQWFAPAVRGDIPPGCAA---FGFVCDGTR 93 (830)
T ss_pred ceEEEecccCCCCCccccchheee-eeeEEEecCCcccchhhhhhhccccceeecchhcCCCCCchhh---cceEecCce
Confidence 57777653 32 2222332222 23455565443 356789999999982 2222221 112233334
Q ss_pred EEEEeC-------CCeEEEEcCCCCCeeeCCCC----CCCCCCCceeEEEEEecCCCCCceEEEEEeccc-----C----
Q 038464 117 VCFRTA-------SGKFIVSNPVTGSSRELPPL----DADTENQSLHAIVMTTSSKNPSNYKLVLVYGEL-----P---- 176 (404)
Q Consensus 117 v~~~~~-------~~~~~v~NP~t~~w~~lP~~----~~~~~~~~~~~~~~~g~~~~~~~~kv~~~~g~~-----~---- 176 (404)
+++.++ +++++-.-...-+|++|-+- ..++..|..|.+.+.| -|.|.+||-. +
T Consensus 94 ilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~g-------nKcYlFGGLaNdseDpknNv 166 (830)
T KOG4152|consen 94 ILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVG-------NKCYLFGGLANDSEDPKNNV 166 (830)
T ss_pred EEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEec-------cEeEEeccccccccCccccc
Confidence 554443 45555445555578776432 2344556677777764 6788888631 1
Q ss_pred -c--eEEEEEeCCCC----ceeecccc--cccccccccccccCCcccc-----CCeEEEeecCCceeeecccCCCccccc
Q 038464 177 -K--LSFKVYNSCLN----CWEEETLL--LSRKSEQALEVDSIDHHDD-----EDAVYFLSKAGNVVATNMQRSPSKQYS 242 (404)
Q Consensus 177 -~--~~~~vy~~~~~----~W~~~~~~--~p~~~~~~~~~~~~~~v~~-----~G~ly~~~~~~~~~~~~~~~~~~~~~~ 242 (404)
+ +...+..+..+ .|...-.. +|...+. |.+.+++ .-++|+.||..+
T Consensus 167 PrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRES-----HTAViY~eKDs~~skmvvyGGM~G--------------- 226 (830)
T KOG4152|consen 167 PRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRES-----HTAVIYTEKDSKKSKMVVYGGMSG--------------- 226 (830)
T ss_pred chhhcceEEEEeccCCceEEEecccccCCCCCCccc-----ceeEEEEeccCCcceEEEEccccc---------------
Confidence 1 23444444332 47755331 2321111 1122221 223555554321
Q ss_pred ceeeecCCceEEEEeccCCeEEEEecCCCceeecc----ccCCccccccceeEeeCCeEEEEEeee------------c-
Q 038464 243 SVITSKDGEEIVYFLNSCGTIVACNLTQKSFTEYP----RLLPVFSEYSIDVVECRGELLVVVLSE------------F- 305 (404)
Q Consensus 243 ~~~~~~~~~~~~y~~~~~~~i~~fD~~~~~w~~i~----~~~p~~~~~~~~lv~~~g~L~~v~~~~------------~- 305 (404)
.+.+.+.-+|+++-.|.+.. .|+|... +.....++++|++++.- +
T Consensus 227 ---------------~RLgDLW~Ldl~Tl~W~kp~~~G~~PlPRSL---Hsa~~IGnKMyvfGGWVPl~~~~~~~~~hek 288 (830)
T KOG4152|consen 227 ---------------CRLGDLWTLDLDTLTWNKPSLSGVAPLPRSL---HSATTIGNKMYVFGGWVPLVMDDVKVATHEK 288 (830)
T ss_pred ---------------ccccceeEEecceeecccccccCCCCCCccc---ccceeecceeEEecceeeeeccccccccccc
Confidence 01236888999999999752 2455543 33456688999988741 0
Q ss_pred --cceeeEEEEEEeCCCCCeEEec--cCChhHHHHhccCcceEEEEecCCEEEEEE
Q 038464 306 --LESASLRVWRFDQDNGFWHQIA--AMPPAMSHEFYGKKVDINCVAAGHQIFICF 357 (404)
Q Consensus 306 --~~~~~~~vw~l~~~~~~W~~v~--~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~ 357 (404)
.-...+..|.+|+. .|+.+- .+.+.- ..+.+-..-+++.|.++||+-
T Consensus 289 EWkCTssl~clNldt~--~W~tl~~d~~ed~t---iPR~RAGHCAvAigtRlYiWS 339 (830)
T KOG4152|consen 289 EWKCTSSLACLNLDTM--AWETLLMDTLEDNT---IPRARAGHCAVAIGTRLYIWS 339 (830)
T ss_pred eeeeccceeeeeecch--heeeeeeccccccc---cccccccceeEEeccEEEEEe
Confidence 01245666666654 798764 222111 112222233457899999864
No 35
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.90 E-value=0.00026 Score=63.75 Aligned_cols=193 Identities=12% Similarity=0.126 Sum_probs=107.6
Q ss_pred eEEEEeC--CCeEEEEcCC--CCCeeeCCCCCCCCCCCceeEEEEEecCCCCCceEEEEEecc--c-C-----ceEEEEE
Q 038464 116 LVCFRTA--SGKFIVSNPV--TGSSRELPPLDADTENQSLHAIVMTTSSKNPSNYKLVLVYGE--L-P-----KLSFKVY 183 (404)
Q Consensus 116 lv~~~~~--~~~~~v~NP~--t~~w~~lP~~~~~~~~~~~~~~~~~g~~~~~~~~kv~~~~g~--~-~-----~~~~~vy 183 (404)
-+|+..+ -...++.|.. .+.|..+...+-. +|.....+++ +.|+++++|. . . .+.+..|
T Consensus 48 ~~YVGLGs~G~afy~ldL~~~~k~W~~~a~FpG~--~rnqa~~a~~-------~~kLyvFgG~Gk~~~~~~~~~nd~Y~y 118 (381)
T COG3055 48 TVYVGLGSAGTAFYVLDLKKPGKGWTKIADFPGG--ARNQAVAAVI-------GGKLYVFGGYGKSVSSSPQVFNDAYRY 118 (381)
T ss_pred eEEEEeccCCccceehhhhcCCCCceEcccCCCc--ccccchheee-------CCeEEEeeccccCCCCCceEeeeeEEe
Confidence 4454443 2345565555 4679988887742 2222222333 5788888753 1 1 2579999
Q ss_pred eCCCCceeecccccccc-cccccccccCCccccCC-eEEEeecCCc----eeeecccCCCc--ccccceeeecCCceEEE
Q 038464 184 NSCLNCWEEETLLLSRK-SEQALEVDSIDHHDDED-AVYFLSKAGN----VVATNMQRSPS--KQYSSVITSKDGEEIVY 255 (404)
Q Consensus 184 ~~~~~~W~~~~~~~p~~-~~~~~~~~~~~~v~~~G-~ly~~~~~~~----~~~~~~~~~~~--~~~~~~~~~~~~~~~~y 255 (404)
|+.+++|..+....|+- ..+ ..+.+++ .+|+.+|... -.-+|...... ..+... -..|
T Consensus 119 ~p~~nsW~kl~t~sP~gl~G~-------~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i-------~~~y 184 (381)
T COG3055 119 DPSTNSWHKLDTRSPTGLVGA-------STFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKI-------IAHY 184 (381)
T ss_pred cCCCChhheeccccccccccc-------eeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHH-------HHHH
Confidence 99999999998755552 121 2355666 8999887421 00111110000 001000 0111
Q ss_pred Eec------cCCeEEEEecCCCceeeccccCCccccccceeEeeCCeEEEEEeeeccceeeEEEEEEe--CCCCCeEEec
Q 038464 256 FLN------SCGTIVACNLTQKSFTEYPRLLPVFSEYSIDVVECRGELLVVVLSEFLESASLRVWRFD--QDNGFWHQIA 327 (404)
Q Consensus 256 ~~~------~~~~i~~fD~~~~~w~~i~~~~p~~~~~~~~lv~~~g~L~~v~~~~~~~~~~~~vw~l~--~~~~~W~~v~ 327 (404)
|-. ....+++||++++.|+.+.. .|-.......++.-+++|.+|.+.-......-++++.+ ....+|.++.
T Consensus 185 f~~~~~dy~~n~ev~sy~p~~n~W~~~G~-~pf~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~ 263 (381)
T COG3055 185 FDKKAEDYFFNKEVLSYDPSTNQWRNLGE-NPFYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLS 263 (381)
T ss_pred hCCCHHHhcccccccccccccchhhhcCc-CcccCccCcceeecCCeEEEEcceecCCccccceeEEEeccCceeeeecc
Confidence 110 12479999999999998742 34333223344556778988887543333444455544 4666899998
Q ss_pred cCChh
Q 038464 328 AMPPA 332 (404)
Q Consensus 328 ~~~~~ 332 (404)
.+|..
T Consensus 264 ~lp~~ 268 (381)
T COG3055 264 DLPAP 268 (381)
T ss_pred CCCCC
Confidence 88754
No 36
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=3.5e-05 Score=67.84 Aligned_cols=40 Identities=28% Similarity=0.510 Sum_probs=37.2
Q ss_pred CCcccChHHHHHHHHhcCChhhhhHhhhcchhhhhccCCh
Q 038464 20 FSMEELNQDLLERVLSWLPTSTFFRLSSVCKRWKSVADSP 59 (404)
Q Consensus 20 ~~~~~LP~dll~~Il~rLp~~~l~r~~~Vck~W~~li~~~ 59 (404)
-.|..|||+|++.||+.|+.+++.+++.|||+|+.+.++.
T Consensus 96 v~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de 135 (419)
T KOG2120|consen 96 VSWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDE 135 (419)
T ss_pred CCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccc
Confidence 4499999999999999999999999999999999998764
No 37
>PF13964 Kelch_6: Kelch motif
Probab=97.60 E-value=0.00018 Score=46.55 Aligned_cols=38 Identities=21% Similarity=0.330 Sum_probs=31.9
Q ss_pred eeEEEecCceEEEEeC-------CCeEEEEcCCCCCeeeCCCCCC
Q 038464 107 SIPVAASGGLVCFRTA-------SGKFIVSNPVTGSSRELPPLDA 144 (404)
Q Consensus 107 ~~~~~s~~Glv~~~~~-------~~~~~v~NP~t~~w~~lP~~~~ 144 (404)
...+++.+|.||+.++ .+.+++|||.|++|..+|+|+.
T Consensus 4 ~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~ 48 (50)
T PF13964_consen 4 GHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPT 48 (50)
T ss_pred cCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCC
Confidence 3457788889998886 3578999999999999999984
No 38
>PF13964 Kelch_6: Kelch motif
Probab=97.56 E-value=0.00014 Score=46.95 Aligned_cols=44 Identities=25% Similarity=0.338 Sum_probs=36.6
Q ss_pred ceeEeeCCeEEEEEeeeccceeeEEEEEEeCCCCCeEEeccCCh
Q 038464 288 IDVVECRGELLVVVLSEFLESASLRVWRFDQDNGFWHQIAAMPP 331 (404)
Q Consensus 288 ~~lv~~~g~L~~v~~~~~~~~~~~~vw~l~~~~~~W~~v~~~~~ 331 (404)
+.++..+|+||++||........-+||++|.++++|+++.+||.
T Consensus 5 ~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~ 48 (50)
T PF13964_consen 5 HSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPT 48 (50)
T ss_pred CEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCC
Confidence 56788999999999976434556779999999999999999983
No 39
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=97.52 E-value=0.00034 Score=44.45 Aligned_cols=43 Identities=16% Similarity=0.260 Sum_probs=36.4
Q ss_pred ceeEeeCCeEEEEEeeeccceeeEEEEEEeCCCCCeEEeccCC
Q 038464 288 IDVVECRGELLVVVLSEFLESASLRVWRFDQDNGFWHQIAAMP 330 (404)
Q Consensus 288 ~~lv~~~g~L~~v~~~~~~~~~~~~vw~l~~~~~~W~~v~~~~ 330 (404)
+.++..+++||++||........-.++.+|..+++|+++.+||
T Consensus 5 ~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 5 HAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp EEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred CEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 5678899999999998653556777999999999999999886
No 40
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=97.37 E-value=0.00037 Score=44.80 Aligned_cols=44 Identities=25% Similarity=0.383 Sum_probs=36.4
Q ss_pred cceeEeeCCeEEEEEee--eccceeeEEEEEEeCCCCCeEEeccCC
Q 038464 287 SIDVVECRGELLVVVLS--EFLESASLRVWRFDQDNGFWHQIAAMP 330 (404)
Q Consensus 287 ~~~lv~~~g~L~~v~~~--~~~~~~~~~vw~l~~~~~~W~~v~~~~ 330 (404)
.+..+..+++||++++. +.......++|.+|.++.+|+++..||
T Consensus 4 ~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 4 GHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred ceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 35567889999999998 334567788999999999999998875
No 41
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.33 E-value=0.0078 Score=54.50 Aligned_cols=157 Identities=13% Similarity=0.167 Sum_probs=93.8
Q ss_pred CCceeecccccccccccccccccCCccccCCeEEEeecCCceeeecccCCCcccccceeeecCCceEEEEeccCCeEEEE
Q 038464 187 LNCWEEETLLLSRKSEQALEVDSIDHHDDEDAVYFLSKAGNVVATNMQRSPSKQYSSVITSKDGEEIVYFLNSCGTIVAC 266 (404)
Q Consensus 187 ~~~W~~~~~~~p~~~~~~~~~~~~~~v~~~G~ly~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~i~~f 266 (404)
...|+.++. +|..... ....+.++|+||+.++.+.-.. .+.. + .+.+..|
T Consensus 69 ~k~W~~~a~-FpG~~rn-----qa~~a~~~~kLyvFgG~Gk~~~-----------~~~~-~------------~nd~Y~y 118 (381)
T COG3055 69 GKGWTKIAD-FPGGARN-----QAVAAVIGGKLYVFGGYGKSVS-----------SSPQ-V------------FNDAYRY 118 (381)
T ss_pred CCCceEccc-CCCcccc-----cchheeeCCeEEEeeccccCCC-----------CCce-E------------eeeeEEe
Confidence 367999998 8763222 1135789999999998753211 0000 0 1368999
Q ss_pred ecCCCceeeccccCCccccccceeEeeCC-eEEEEEeeec-----------------------------c----ceeeEE
Q 038464 267 NLTQKSFTEYPRLLPVFSEYSIDVVECRG-ELLVVVLSEF-----------------------------L----ESASLR 312 (404)
Q Consensus 267 D~~~~~w~~i~~~~p~~~~~~~~lv~~~g-~L~~v~~~~~-----------------------------~----~~~~~~ 312 (404)
|+.+++|..+....|... ....-+..++ ++++.++... . -...-+
T Consensus 119 ~p~~nsW~kl~t~sP~gl-~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~e 197 (381)
T COG3055 119 DPSTNSWHKLDTRSPTGL-VGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKE 197 (381)
T ss_pred cCCCChhheecccccccc-ccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhccccc
Confidence 999999999977666542 2333345566 8998887510 0 011234
Q ss_pred EEEEeCCCCCeEEeccCChhHHHHhccCcceEEEEecCCEEEEEEecC-----CCceEEEEECCC--CceEECCCCC
Q 038464 313 VWRFDQDNGFWHQIAAMPPAMSHEFYGKKVDINCVAAGHQIFICFNSA-----ELFSYVLCDLVT--NEWVELPKCS 382 (404)
Q Consensus 313 vw~l~~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~-----~~~~~~~yd~~~--~~w~~~~~~~ 382 (404)
||.+++..+.|.-....|- .+.. ...++..+|.+.++ .+. ....+..+|... -+|.+++.+|
T Consensus 198 v~sy~p~~n~W~~~G~~pf------~~~a-Gsa~~~~~n~~~lI-nGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp 266 (381)
T COG3055 198 VLSYDPSTNQWRNLGENPF------YGNA-GSAVVIKGNKLTLI-NGEIKPGLRTAEVKQADFGGDNLKWLKLSDLP 266 (381)
T ss_pred ccccccccchhhhcCcCcc------cCcc-CcceeecCCeEEEE-cceecCCccccceeEEEeccCceeeeeccCCC
Confidence 6777777778888877762 1211 12233456655321 221 223555667664 5799998877
No 42
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=96.92 E-value=0.0029 Score=40.52 Aligned_cols=43 Identities=21% Similarity=0.389 Sum_probs=26.4
Q ss_pred ceeEee-CCeEEEEEeeeccceeeEEEEEEeCCCCCeEEeccCC
Q 038464 288 IDVVEC-RGELLVVVLSEFLESASLRVWRFDQDNGFWHQIAAMP 330 (404)
Q Consensus 288 ~~lv~~-~g~L~~v~~~~~~~~~~~~vw~l~~~~~~W~~v~~~~ 330 (404)
+..+.. +++|+++||........-++|.+|..+++|+++..+|
T Consensus 5 h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 5 HSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp -EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS-
T ss_pred EEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCC
Confidence 344555 6899999998644456667999999999999998887
No 43
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=96.83 E-value=0.004 Score=39.40 Aligned_cols=40 Identities=30% Similarity=0.370 Sum_probs=30.6
Q ss_pred eeEEEEEecCCCCCceEEEEEecccC----ceEEEEEeCCCCceeecccccc
Q 038464 151 LHAIVMTTSSKNPSNYKLVLVYGELP----KLSFKVYNSCLNCWEEETLLLS 198 (404)
Q Consensus 151 ~~~~~~~g~~~~~~~~kv~~~~g~~~----~~~~~vy~~~~~~W~~~~~~~p 198 (404)
.++++.+ +.+||++||... ...+++||+.+++|+.+++ ||
T Consensus 4 ~~~~~~~-------~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~-mp 47 (47)
T PF01344_consen 4 GHAAVVV-------GNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPP-MP 47 (47)
T ss_dssp SEEEEEE-------TTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEE-ES
T ss_pred cCEEEEE-------CCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCC-CC
Confidence 4555555 578999997632 3689999999999999887 44
No 44
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=96.34 E-value=0.11 Score=48.62 Aligned_cols=115 Identities=16% Similarity=0.208 Sum_probs=66.5
Q ss_pred eEEEEecCCCceeeccccCCccccccceeEeeCCeEEEEEeeeccce------eeEEEEEEeC--------CCCCeEEec
Q 038464 262 TIVACNLTQKSFTEYPRLLPVFSEYSIDVVECRGELLVVVLSEFLES------ASLRVWRFDQ--------DNGFWHQIA 327 (404)
Q Consensus 262 ~i~~fD~~~~~w~~i~~~~p~~~~~~~~lv~~~g~L~~v~~~~~~~~------~~~~vw~l~~--------~~~~W~~v~ 327 (404)
.++.||.++..-...+. ++..+ ...-.+..+|+||++........ ..+++..++. ....|..+.
T Consensus 87 ~t~vyDt~t~av~~~P~-l~~pk-~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~~~~~~~w~W~~LP 164 (342)
T PF07893_consen 87 RTLVYDTDTRAVATGPR-LHSPK-RCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDDPSPEESWSWRSLP 164 (342)
T ss_pred CeEEEECCCCeEeccCC-CCCCC-cceEEEEeCCeEEEeeccCccccccCccceeEEEeccccccccccCCCcceEEcCC
Confidence 58889999988776643 22222 12334556899999986532111 1777776652 344676655
Q ss_pred cCChhHHHHhccCc---ceEEEEecCCEEEEEEecCCCceEEEEECCCCceEECCCCC
Q 038464 328 AMPPAMSHEFYGKK---VDINCVAAGHQIFICFNSAELFSYVLCDLVTNEWVELPKCS 382 (404)
Q Consensus 328 ~~~~~~~~~~~~~~---~~~~~~~~~~~i~v~~~~~~~~~~~~yd~~~~~w~~~~~~~ 382 (404)
.-| +....... ..-+++..|..|+|...+ .....++||..+.+|+++....
T Consensus 165 ~PP---f~~~~~~~~~~i~sYavv~g~~I~vS~~~-~~~GTysfDt~~~~W~~~GdW~ 218 (342)
T PF07893_consen 165 PPP---FVRDRRYSDYRITSYAVVDGRTIFVSVNG-RRWGTYSFDTESHEWRKHGDWM 218 (342)
T ss_pred CCC---ccccCCcccceEEEEEEecCCeEEEEecC-CceEEEEEEcCCcceeecccee
Confidence 432 21111100 122333357788764332 1236899999999999998843
No 45
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=96.17 E-value=1.1 Score=41.86 Aligned_cols=106 Identities=14% Similarity=0.165 Sum_probs=59.3
Q ss_pred CceeeeecCCCceeeccCCCCCCCeeEEEecCceEEEEeC-----CC------e--EEEEcCC--------CCCeeeCCC
Q 038464 83 NHSIVFDSAEKTWKELNFPNSSPDSIPVAASGGLVCFRTA-----SG------K--FIVSNPV--------TGSSRELPP 141 (404)
Q Consensus 83 ~~~~~~d~~~~~w~~l~~p~~~~~~~~~~s~~Glv~~~~~-----~~------~--~~v~NP~--------t~~w~~lP~ 141 (404)
...+.||..+.....+|.+..+...-+..+.+|-||+... .. . ..++++. +-.|+.||+
T Consensus 86 ~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~~~~~~~w~W~~LP~ 165 (342)
T PF07893_consen 86 GRTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDDPSPEESWSWRSLPP 165 (342)
T ss_pred CCeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEeccccccccccCCCcceEEcCCC
Confidence 4467999988877766665544322223444666777654 11 3 3445531 235889998
Q ss_pred CCCCCCCCc----eeEEEEEecCCCCCceEEEEEecccCceEEEEEeCCCCceeeccc
Q 038464 142 LDADTENQS----LHAIVMTTSSKNPSNYKLVLVYGELPKLSFKVYNSCLNCWEEETL 195 (404)
Q Consensus 142 ~~~~~~~~~----~~~~~~~g~~~~~~~~kv~~~~g~~~~~~~~vy~~~~~~W~~~~~ 195 (404)
+++....+. ..+.++++ +....+.+.+. ...+..||-++..|+....
T Consensus 166 PPf~~~~~~~~~~i~sYavv~-----g~~I~vS~~~~--~~GTysfDt~~~~W~~~Gd 216 (342)
T PF07893_consen 166 PPFVRDRRYSDYRITSYAVVD-----GRTIFVSVNGR--RWGTYSFDTESHEWRKHGD 216 (342)
T ss_pred CCccccCCcccceEEEEEEec-----CCeEEEEecCC--ceEEEEEEcCCcceeeccc
Confidence 876433322 33333431 12222223211 1368899999999998876
No 46
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=96.10 E-value=0.0032 Score=55.96 Aligned_cols=43 Identities=23% Similarity=0.485 Sum_probs=37.8
Q ss_pred cccChHHHHHHHHhcCC-----hhhhhHhhhcchhhhhccCChhHHHH
Q 038464 22 MEELNQDLLERVLSWLP-----TSTFFRLSSVCKRWKSVADSPSFKLA 64 (404)
Q Consensus 22 ~~~LP~dll~~Il~rLp-----~~~l~r~~~Vck~W~~li~~~~F~~~ 64 (404)
+..||+|||..||.++= ..++.++++|||.|....++|.|-++
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~ 154 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRL 154 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHH
Confidence 45799999999998765 49999999999999999999987665
No 47
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=95.80 E-value=0.026 Score=36.05 Aligned_cols=30 Identities=17% Similarity=0.041 Sum_probs=23.3
Q ss_pred CCeEEEEcCCCCCeeeCCCCCCCCCCCceeEEE
Q 038464 123 SGKFIVSNPVTGSSRELPPLDADTENQSLHAIV 155 (404)
Q Consensus 123 ~~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~ 155 (404)
.++++++|+.+++|++++.+| ..|..|+++
T Consensus 18 ~nd~~~~~~~~~~W~~~~~~P---~~R~~h~~~ 47 (49)
T PF13415_consen 18 LNDVWVFDLDTNTWTRIGDLP---PPRSGHTAT 47 (49)
T ss_pred ecCEEEEECCCCEEEECCCCC---CCccceEEE
Confidence 357999999999999998877 455556554
No 48
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=95.74 E-value=0.2 Score=44.08 Aligned_cols=143 Identities=18% Similarity=0.223 Sum_probs=81.8
Q ss_pred ecCCCceeeccCCCCCCCeeEEEecCceEEEEeC-CCeEEEEcCCCCCeeeCCCCCC-CCCCCceeEEEEEecCCCCCce
Q 038464 89 DSAEKTWKELNFPNSSPDSIPVAASGGLVCFRTA-SGKFIVSNPVTGSSRELPPLDA-DTENQSLHAIVMTTSSKNPSNY 166 (404)
Q Consensus 89 d~~~~~w~~l~~p~~~~~~~~~~s~~Glv~~~~~-~~~~~v~NP~t~~w~~lP~~~~-~~~~~~~~~~~~~g~~~~~~~~ 166 (404)
||.++...-++.|.+...+-+++.-+|-|.+... .+-+...||.++.-..+|.+.. ....| -+..|+ ..
T Consensus 174 dPa~~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp~~~~aev~p~P~~~~~gsR------riwsdp---ig 244 (353)
T COG4257 174 DPARNVISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSR------RIWSDP---IG 244 (353)
T ss_pred CcccCceeeeccCCCCCCcceEECCCCcEEEEeccccceEEcccccCCcceecCCCccccccc------ccccCc---cC
Confidence 4444433344455544445567888898888754 5567889999998778877762 10111 111111 22
Q ss_pred EEEEEecccCceEEEEEeCCCCceeecccccccccccccccccCCccccCCeEEEeecCCceeeecccCCCcccccceee
Q 038464 167 KLVLVYGELPKLSFKVYNSCLNCWEEETLLLSRKSEQALEVDSIDHHDDEDAVYFLSKAGNVVATNMQRSPSKQYSSVIT 246 (404)
Q Consensus 167 kv~~~~g~~~~~~~~vy~~~~~~W~~~~~~~p~~~~~~~~~~~~~~v~~~G~ly~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (404)
++-.. ......++.||+.+.+|.+.+ +|....+ +.. --|.-.|.+ |+...+
T Consensus 245 ~~wit--twg~g~l~rfdPs~~sW~eyp--LPgs~ar--pys--~rVD~~grV-W~sea~-------------------- 295 (353)
T COG4257 245 RAWIT--TWGTGSLHRFDPSVTSWIEYP--LPGSKAR--PYS--MRVDRHGRV-WLSEAD-------------------- 295 (353)
T ss_pred cEEEe--ccCCceeeEeCcccccceeee--CCCCCCC--cce--eeeccCCcE-Eeeccc--------------------
Confidence 22221 112357999999999999887 4442111 110 013334444 442211
Q ss_pred ecCCceEEEEeccCCeEEEEecCCCceeeccccCCc
Q 038464 247 SKDGEEIVYFLNSCGTIVACNLTQKSFTEYPRLLPV 282 (404)
Q Consensus 247 ~~~~~~~~y~~~~~~~i~~fD~~~~~w~~i~~~~p~ 282 (404)
.+.|..||+++.+++.++.+.|.
T Consensus 296 -------------agai~rfdpeta~ftv~p~pr~n 318 (353)
T COG4257 296 -------------AGAIGRFDPETARFTVLPIPRPN 318 (353)
T ss_pred -------------cCceeecCcccceEEEecCCCCC
Confidence 23799999999999998655544
No 49
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=95.67 E-value=1.4 Score=43.77 Aligned_cols=45 Identities=20% Similarity=0.391 Sum_probs=39.4
Q ss_pred CCCcccChHHHHHHHHhcCChhhhhHhhhcchhhhhccCChhHHH
Q 038464 19 SFSMEELNQDLLERVLSWLPTSTFFRLSSVCKRWKSVADSPSFKL 63 (404)
Q Consensus 19 ~~~~~~LP~dll~~Il~rLp~~~l~r~~~Vck~W~~li~~~~F~~ 63 (404)
...+..||.++...||..|+.++++.++.||+.|+.++.+.....
T Consensus 105 ~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~ 149 (537)
T KOG0274|consen 105 RDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWW 149 (537)
T ss_pred cchhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhh
Confidence 355788999999999999999999999999999999998654444
No 50
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=95.64 E-value=0.016 Score=37.05 Aligned_cols=38 Identities=29% Similarity=0.472 Sum_probs=30.8
Q ss_pred CCeEEEEEeee-ccceeeEEEEEEeCCCCCeEEeccCCh
Q 038464 294 RGELLVVVLSE-FLESASLRVWRFDQDNGFWHQIAAMPP 331 (404)
Q Consensus 294 ~g~L~~v~~~~-~~~~~~~~vw~l~~~~~~W~~v~~~~~ 331 (404)
++++|+++|.. ......-++|.++..+.+|+++..+|.
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~ 39 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPP 39 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCC
Confidence 57899999876 344566789999999999999988874
No 51
>smart00612 Kelch Kelch domain.
Probab=95.62 E-value=0.017 Score=36.20 Aligned_cols=32 Identities=25% Similarity=0.260 Sum_probs=24.4
Q ss_pred EEEEEecccC---ceEEEEEeCCCCceeeccccccc
Q 038464 167 KLVLVYGELP---KLSFKVYNSCLNCWEEETLLLSR 199 (404)
Q Consensus 167 kv~~~~g~~~---~~~~~vy~~~~~~W~~~~~~~p~ 199 (404)
+|+++||... ...+++||+.++.|+..+. ++.
T Consensus 1 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~-~~~ 35 (47)
T smart00612 1 KIYVVGGFDGGQRLKSVEVYDPETNKWTPLPS-MPT 35 (47)
T ss_pred CEEEEeCCCCCceeeeEEEECCCCCeEccCCC-CCC
Confidence 4677776532 3579999999999999887 654
No 52
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=95.61 E-value=0.51 Score=41.57 Aligned_cols=159 Identities=15% Similarity=0.105 Sum_probs=84.0
Q ss_pred eEEEEEeCCCCceeecccccccccccccccccCCccccCCeEEEeecCCceeeecccCCCcccccceeeecCCceEEEEe
Q 038464 178 LSFKVYNSCLNCWEEETLLLSRKSEQALEVDSIDHHDDEDAVYFLSKAGNVVATNMQRSPSKQYSSVITSKDGEEIVYFL 257 (404)
Q Consensus 178 ~~~~vy~~~~~~W~~~~~~~p~~~~~~~~~~~~~~v~~~G~ly~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ 257 (404)
....+||+.+++++.+.. .. . .|.+...+.-||.+...||..+ |
T Consensus 46 a~s~~yD~~tn~~rpl~v--~t--d---~FCSgg~~L~dG~ll~tGG~~~----------------------G------- 89 (243)
T PF07250_consen 46 AHSVEYDPNTNTFRPLTV--QT--D---TFCSGGAFLPDGRLLQTGGDND----------------------G------- 89 (243)
T ss_pred EEEEEEecCCCcEEeccC--CC--C---CcccCcCCCCCCCEEEeCCCCc----------------------c-------
Confidence 357799999999998764 11 1 2223345566888876665421 1
Q ss_pred ccCCeEEEEecCC----CceeeccccCCccccccceeEeeCCeEEEEEeeeccceeeEEEEEEeCCCCCeEEeccCChhH
Q 038464 258 NSCGTIVACNLTQ----KSFTEYPRLLPVFSEYSIDVVECRGELLVVVLSEFLESASLRVWRFDQDNGFWHQIAAMPPAM 333 (404)
Q Consensus 258 ~~~~~i~~fD~~~----~~w~~i~~~~p~~~~~~~~lv~~~g~L~~v~~~~~~~~~~~~vw~l~~~~~~W~~v~~~~~~~ 333 (404)
.+.+..|++.. ..|.+....|-..+-|.....--+|++++++|.. ....+.|--.........+.-+. ..
T Consensus 90 --~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~---~~t~E~~P~~~~~~~~~~~~~l~-~~ 163 (243)
T PF07250_consen 90 --NKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSN---NPTYEFWPPKGPGPGPVTLPFLS-QT 163 (243)
T ss_pred --ccceEEEecCCCCCCCCceECcccccCCCccccceECCCCCEEEEeCcC---CCcccccCCccCCCCceeeecch-hh
Confidence 12455677654 5688764334333323222333489999999864 23333441111111111111111 00
Q ss_pred HHHhccCcceEEEEecCCEEEEEEecCCCceEEEEECCCCce-EECCCCC
Q 038464 334 SHEFYGKKVDINCVAAGHQIFICFNSAELFSYVLCDLVTNEW-VELPKCS 382 (404)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~yd~~~~~w-~~~~~~~ 382 (404)
.......--.+..+..+++||+... ....+||.+++++ +.+|.+|
T Consensus 164 ~~~~~~nlYP~~~llPdG~lFi~an----~~s~i~d~~~n~v~~~lP~lP 209 (243)
T PF07250_consen 164 SDTLPNNLYPFVHLLPDGNLFIFAN----RGSIIYDYKTNTVVRTLPDLP 209 (243)
T ss_pred hccCccccCceEEEcCCCCEEEEEc----CCcEEEeCCCCeEEeeCCCCC
Confidence 0001011112445567888876432 3467899999987 7888877
No 53
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=95.61 E-value=0.022 Score=36.35 Aligned_cols=30 Identities=10% Similarity=0.110 Sum_probs=19.1
Q ss_pred CceEEEEeC-------CCeEEEEcCCCCCeeeCCCCC
Q 038464 114 GGLVCFRTA-------SGKFIVSNPVTGSSRELPPLD 143 (404)
Q Consensus 114 ~Glv~~~~~-------~~~~~v~NP~t~~w~~lP~~~ 143 (404)
++.+++.++ .+.+++||+.+++|.++|++|
T Consensus 12 ~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 12 DNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS-
T ss_pred CCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCC
Confidence 467777665 347899999999999998876
No 54
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=95.43 E-value=0.2 Score=44.03 Aligned_cols=91 Identities=12% Similarity=0.185 Sum_probs=57.1
Q ss_pred eeeeecCCCceeeccCCCCC-CCeeEEEecCceEEEEeC----CCeEEEEcCCC----CCeeeCCC-CCCCCCCCceeEE
Q 038464 85 SIVFDSAEKTWKELNFPNSS-PDSIPVAASGGLVCFRTA----SGKFIVSNPVT----GSSRELPP-LDADTENQSLHAI 154 (404)
Q Consensus 85 ~~~~d~~~~~w~~l~~p~~~-~~~~~~~s~~Glv~~~~~----~~~~~v~NP~t----~~w~~lP~-~~~~~~~~~~~~~ 154 (404)
...||+.++++..+...... +... ..-.+|-++..++ ...+-+++|.+ .+|...+. |. ..|-+...
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg-~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~---~~RWYpT~ 123 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGG-AFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQ---SGRWYPTA 123 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCc-CCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECccccc---CCCccccc
Confidence 56899999999877664321 0000 1113676766665 45677899986 67988875 55 33444445
Q ss_pred EEEecCCCCCceEEEEEecccCceEEEEEeCC
Q 038464 155 VMTTSSKNPSNYKLVLVYGELPKLSFKVYNSC 186 (404)
Q Consensus 155 ~~~g~~~~~~~~kv~~~~g~~~~~~~~vy~~~ 186 (404)
..+. +.+|+++||.. ....|.|...
T Consensus 124 ~~L~------DG~vlIvGG~~-~~t~E~~P~~ 148 (243)
T PF07250_consen 124 TTLP------DGRVLIVGGSN-NPTYEFWPPK 148 (243)
T ss_pred eECC------CCCEEEEeCcC-CCcccccCCc
Confidence 5554 67899998763 4456777663
No 55
>smart00612 Kelch Kelch domain.
Probab=95.35 E-value=0.043 Score=34.26 Aligned_cols=30 Identities=23% Similarity=0.326 Sum_probs=22.7
Q ss_pred CeEEEEcCCCCCeeeCCCCCCCCCCCceeEEEE
Q 038464 124 GKFIVSNPVTGSSRELPPLDADTENQSLHAIVM 156 (404)
Q Consensus 124 ~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~ 156 (404)
+.+.+|||.+++|..+|+|+. .+..++++.
T Consensus 15 ~~v~~yd~~~~~W~~~~~~~~---~r~~~~~~~ 44 (47)
T smart00612 15 KSVEVYDPETNKWTPLPSMPT---PRSGHGVAV 44 (47)
T ss_pred eeEEEECCCCCeEccCCCCCC---ccccceEEE
Confidence 468999999999999999983 444444433
No 56
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=95.29 E-value=0.055 Score=34.52 Aligned_cols=36 Identities=19% Similarity=0.191 Sum_probs=28.7
Q ss_pred eEEEecCceEEEEeC---------CCeEEEEcCCCCCeeeCCCCC
Q 038464 108 IPVAASGGLVCFRTA---------SGKFIVSNPVTGSSRELPPLD 143 (404)
Q Consensus 108 ~~~~s~~Glv~~~~~---------~~~~~v~NP~t~~w~~lP~~~ 143 (404)
..+++.++.|++.++ .+.+.++|+.|++|..+++++
T Consensus 5 hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 5 HSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred eEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 346677888888765 357899999999999999874
No 57
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=93.59 E-value=7.1 Score=37.35 Aligned_cols=214 Identities=14% Similarity=0.133 Sum_probs=109.4
Q ss_pred EecCceEEEEeCCCeEEEEcCCCCC--eeeCCCCCCCCCCCceeEEEEEecCCCCCceEEEEEecccCceEEEEEeCCCC
Q 038464 111 AASGGLVCFRTASGKFIVSNPVTGS--SRELPPLDADTENQSLHAIVMTTSSKNPSNYKLVLVYGELPKLSFKVYNSCLN 188 (404)
Q Consensus 111 ~s~~Glv~~~~~~~~~~v~NP~t~~--w~~lP~~~~~~~~~~~~~~~~~g~~~~~~~~kv~~~~g~~~~~~~~vy~~~~~ 188 (404)
+..+|.|++......++.+|+.|++ |+.-.+-+ . ....++. +.+|++..+ ...+..+|.+++
T Consensus 117 ~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~----~--~ssP~v~-------~~~v~v~~~---~g~l~ald~~tG 180 (394)
T PRK11138 117 TVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAGE----A--LSRPVVS-------DGLVLVHTS---NGMLQALNESDG 180 (394)
T ss_pred EEECCEEEEEcCCCEEEEEECCCCCCcccccCCCc----e--ecCCEEE-------CCEEEEECC---CCEEEEEEccCC
Confidence 4457888876656789999999987 54321111 0 0111111 234554322 245777888665
Q ss_pred c--eeecccccccccccccccccCCccccCCeEEEeecCCceeeecccCCC--ccc----------------ccceeeec
Q 038464 189 C--WEEETLLLSRKSEQALEVDSIDHHDDEDAVYFLSKAGNVVATNMQRSP--SKQ----------------YSSVITSK 248 (404)
Q Consensus 189 ~--W~~~~~~~p~~~~~~~~~~~~~~v~~~G~ly~~~~~~~~~~~~~~~~~--~~~----------------~~~~~~~~ 248 (404)
+ |+.... .|..... ....++..+|.+|+.+..+...++|...+. |.. ........
T Consensus 181 ~~~W~~~~~-~~~~~~~----~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~ 255 (394)
T PRK11138 181 AVKWTVNLD-VPSLTLR----GESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVV 255 (394)
T ss_pred CEeeeecCC-CCccccc----CCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEE
Confidence 4 876433 1110000 001345566777766555556666543211 100 00011122
Q ss_pred CCceEEEEeccCCeEEEEecCCCc--eeeccccCCccccccceeEeeCCeEEEEEeeeccceeeEEEEEEeC--CCCCeE
Q 038464 249 DGEEIVYFLNSCGTIVACNLTQKS--FTEYPRLLPVFSEYSIDVVECRGELLVVVLSEFLESASLRVWRFDQ--DNGFWH 324 (404)
Q Consensus 249 ~~~~~~y~~~~~~~i~~fD~~~~~--w~~i~~~~p~~~~~~~~lv~~~g~L~~v~~~~~~~~~~~~vw~l~~--~~~~W~ 324 (404)
++.+|+....+.+.++|.++.+ |+.- ... ...++..+|+||+....+ . ++.++. ....|.
T Consensus 256 --~~~vy~~~~~g~l~ald~~tG~~~W~~~---~~~----~~~~~~~~~~vy~~~~~g-----~--l~ald~~tG~~~W~ 319 (394)
T PRK11138 256 --GGVVYALAYNGNLVALDLRSGQIVWKRE---YGS----VNDFAVDGGRIYLVDQND-----R--VYALDTRGGVELWS 319 (394)
T ss_pred --CCEEEEEEcCCeEEEEECCCCCEEEeec---CCC----ccCcEEECCEEEEEcCCC-----e--EEEEECCCCcEEEc
Confidence 3478887777899999998754 7642 111 113456688888865321 2 444554 334575
Q ss_pred EeccCChhHHHHhccCcceEEEEecCCEEEEEEecCCCceEEEEECCCCc
Q 038464 325 QIAAMPPAMSHEFYGKKVDINCVAAGHQIFICFNSAELFSYVLCDLVTNE 374 (404)
Q Consensus 325 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~yd~~~~~ 374 (404)
.-. +... ..... +..++.||+. . ..+.+++.|.++++
T Consensus 320 ~~~-~~~~-------~~~sp--~v~~g~l~v~-~--~~G~l~~ld~~tG~ 356 (394)
T PRK11138 320 QSD-LLHR-------LLTAP--VLYNGYLVVG-D--SEGYLHWINREDGR 356 (394)
T ss_pred ccc-cCCC-------cccCC--EEECCEEEEE-e--CCCEEEEEECCCCC
Confidence 421 1100 00011 1247778653 2 34678888998876
No 58
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=93.35 E-value=0.064 Score=50.86 Aligned_cols=114 Identities=16% Similarity=0.192 Sum_probs=66.3
Q ss_pred eEEEEecCCCceeecccc--CCccccccceeEe--eCCeEEEEEeee-----ccceeeEEEEEEeCCCCCeEEeccCCh-
Q 038464 262 TIVACNLTQKSFTEYPRL--LPVFSEYSIDVVE--CRGELLVVVLSE-----FLESASLRVWRFDQDNGFWHQIAAMPP- 331 (404)
Q Consensus 262 ~i~~fD~~~~~w~~i~~~--~p~~~~~~~~lv~--~~g~L~~v~~~~-----~~~~~~~~vw~l~~~~~~W~~v~~~~~- 331 (404)
....|....+.|+.+... .|+.. ..+.+|. ...+||++|.+- ......-++|++|-+++.|..+.-=..
T Consensus 289 DFW~Y~v~e~~W~~iN~~t~~PG~R-sCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~ 367 (723)
T KOG2437|consen 289 DFWAYSVKENQWTCINRDTEGPGAR-SCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAA 367 (723)
T ss_pred HHHhhcCCcceeEEeecCCCCCcch-hhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccc
Confidence 356788999999987432 34433 2344444 456999998752 122456789999999999998742110
Q ss_pred -hHHHHhccCcceEEEEecCCEEEEEEec------CCCceEEEEECCCCceEEC
Q 038464 332 -AMSHEFYGKKVDINCVAAGHQIFICFNS------AELFSYVLCDLVTNEWVEL 378 (404)
Q Consensus 332 -~~~~~~~~~~~~~~~~~~~~~i~v~~~~------~~~~~~~~yd~~~~~w~~~ 378 (404)
.-....+. .++.+-+..+-|||.++. .....+++||.....|+.+
T Consensus 368 dGGP~~vfD--HqM~Vd~~k~~iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~~l 419 (723)
T KOG2437|consen 368 DGGPKLVFD--HQMCVDSEKHMIYVFGGRILTCNEPQFSGLYAFNCQCQTWKLL 419 (723)
T ss_pred cCCcceeec--ceeeEecCcceEEEecCeeccCCCccccceEEEecCCccHHHH
Confidence 00000001 112222334456654321 1236889999999888754
No 59
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=92.83 E-value=8.8 Score=36.35 Aligned_cols=241 Identities=15% Similarity=0.138 Sum_probs=117.3
Q ss_pred CceeeeecCCC--cee-eccCCCCCCCeeEEEecCceEEEEeCCCeEEEEcCCCCC--eeeCCCCCCCCCCCceeEEEEE
Q 038464 83 NHSIVFDSAEK--TWK-ELNFPNSSPDSIPVAASGGLVCFRTASGKFIVSNPVTGS--SRELPPLDADTENQSLHAIVMT 157 (404)
Q Consensus 83 ~~~~~~d~~~~--~w~-~l~~p~~~~~~~~~~s~~Glv~~~~~~~~~~v~NP~t~~--w~~lP~~~~~~~~~~~~~~~~~ 157 (404)
....++|..++ .|. +++.... ...+..++.+++......++.+|+.|++ |+.-..-. .....+.
T Consensus 75 g~v~a~d~~tG~~~W~~~~~~~~~----~~p~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~------~~~~p~v- 143 (377)
T TIGR03300 75 GTVVALDAETGKRLWRVDLDERLS----GGVGADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSE------VLSPPLV- 143 (377)
T ss_pred CeEEEEEccCCcEeeeecCCCCcc----cceEEcCCEEEEEcCCCEEEEEECCCCcEeeeeccCce------eecCCEE-
Confidence 34668887655 354 2322111 1134457888876667789999999987 54321111 0011111
Q ss_pred ecCCCCCceEEEEEecccCceEEEEEeCCCC--ceeecccccccccccccccccCCccccCCeEEEeecCCceeeecccC
Q 038464 158 TSSKNPSNYKLVLVYGELPKLSFKVYNSCLN--CWEEETLLLSRKSEQALEVDSIDHHDDEDAVYFLSKAGNVVATNMQR 235 (404)
Q Consensus 158 g~~~~~~~~kv~~~~g~~~~~~~~vy~~~~~--~W~~~~~~~p~~~~~~~~~~~~~~v~~~G~ly~~~~~~~~~~~~~~~ 235 (404)
. +.+|++..+ ...+..+|..++ .|+.... -+..... ....++..+|.+|+-...+.+.++|...
T Consensus 144 ~------~~~v~v~~~---~g~l~a~d~~tG~~~W~~~~~-~~~~~~~----~~~sp~~~~~~v~~~~~~g~v~ald~~t 209 (377)
T TIGR03300 144 A------NGLVVVRTN---DGRLTALDAATGERLWTYSRV-TPALTLR----GSASPVIADGGVLVGFAGGKLVALDLQT 209 (377)
T ss_pred E------CCEEEEECC---CCeEEEEEcCCCceeeEEccC-CCceeec----CCCCCEEECCEEEEECCCCEEEEEEccC
Confidence 1 234554322 245777787654 4764432 1110000 0012345566665544445556666532
Q ss_pred CC--ccc----------------ccceeeecCCceEEEEeccCCeEEEEecCCCc--eeeccccCCccccccceeEeeCC
Q 038464 236 SP--SKQ----------------YSSVITSKDGEEIVYFLNSCGTIVACNLTQKS--FTEYPRLLPVFSEYSIDVVECRG 295 (404)
Q Consensus 236 ~~--~~~----------------~~~~~~~~~~~~~~y~~~~~~~i~~fD~~~~~--w~~i~~~~p~~~~~~~~lv~~~g 295 (404)
+. |.. ..+..... ++.+|+....+.+.+||.++.+ |..- .+. ...++..+|
T Consensus 210 G~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~--~~~vy~~~~~g~l~a~d~~tG~~~W~~~---~~~----~~~p~~~~~ 280 (377)
T TIGR03300 210 GQPLWEQRVALPKGRTELERLVDVDGDPVVD--GGQVYAVSYQGRVAALDLRSGRVLWKRD---ASS----YQGPAVDDN 280 (377)
T ss_pred CCEeeeeccccCCCCCchhhhhccCCccEEE--CCEEEEEEcCCEEEEEECCCCcEEEeec---cCC----ccCceEeCC
Confidence 21 100 00011111 3578888878899999998654 6542 111 123355678
Q ss_pred eEEEEEeeeccceeeEEEEEEeCCCCCeEEeccCChhHHHHhccCcceEEEEecCCEEEEEEecCCCceEEEEECCCCce
Q 038464 296 ELLVVVLSEFLESASLRVWRFDQDNGFWHQIAAMPPAMSHEFYGKKVDINCVAAGHQIFICFNSAELFSYVLCDLVTNEW 375 (404)
Q Consensus 296 ~L~~v~~~~~~~~~~~~vw~l~~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~yd~~~~~w 375 (404)
++|+.... ..+..+..+..+..|.... ++.. ....+ +..++.+|+. + ..+.+.++|.++++-
T Consensus 281 ~vyv~~~~-----G~l~~~d~~tG~~~W~~~~-~~~~-------~~ssp--~i~g~~l~~~--~-~~G~l~~~d~~tG~~ 342 (377)
T TIGR03300 281 RLYVTDAD-----GVVVALDRRSGSELWKNDE-LKYR-------QLTAP--AVVGGYLVVG--D-FEGYLHWLSREDGSF 342 (377)
T ss_pred EEEEECCC-----CeEEEEECCCCcEEEcccc-ccCC-------ccccC--EEECCEEEEE--e-CCCEEEEEECCCCCE
Confidence 88875421 2333343333444576421 2210 00111 1246677653 2 346788889887653
No 60
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=92.64 E-value=9.8 Score=36.38 Aligned_cols=200 Identities=16% Similarity=0.130 Sum_probs=95.6
Q ss_pred CceeeeecCCC--ceeeccCCCCCCCeeEEEecCceEEEEeCCCeEEEEcCCCCC--eeeCCCCCCCCCCCceeEEEEEe
Q 038464 83 NHSIVFDSAEK--TWKELNFPNSSPDSIPVAASGGLVCFRTASGKFIVSNPVTGS--SRELPPLDADTENQSLHAIVMTT 158 (404)
Q Consensus 83 ~~~~~~d~~~~--~w~~l~~p~~~~~~~~~~s~~Glv~~~~~~~~~~v~NP~t~~--w~~lP~~~~~~~~~~~~~~~~~g 158 (404)
....++|..++ .|.. +.+.... .. -...+|.+++......++.+|+.|++ |+.-...+.. ..+.....+..
T Consensus 130 g~l~ald~~tG~~~W~~-~~~~~~~-ss-P~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~-~~~~~~sP~v~- 204 (394)
T PRK11138 130 GQVYALNAEDGEVAWQT-KVAGEAL-SR-PVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSL-TLRGESAPATA- 204 (394)
T ss_pred CEEEEEECCCCCCcccc-cCCCcee-cC-CEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcc-cccCCCCCEEE-
Confidence 44678888765 4652 2221111 11 12347888876667789999999998 5532111100 00000001111
Q ss_pred cCCCCCceEEEEEecccCceEEEEEeCCCC--ceeeccccccc-ccc-cccccccCCccccCCeEEEeecCCceeeeccc
Q 038464 159 SSKNPSNYKLVLVYGELPKLSFKVYNSCLN--CWEEETLLLSR-KSE-QALEVDSIDHHDDEDAVYFLSKAGNVVATNMQ 234 (404)
Q Consensus 159 ~~~~~~~~kv~~~~g~~~~~~~~vy~~~~~--~W~~~~~~~p~-~~~-~~~~~~~~~~v~~~G~ly~~~~~~~~~~~~~~ 234 (404)
+..+++..+ ...+..+|..++ .|+.... .|. ... ....-....++..+|.+|+.+..+...++|..
T Consensus 205 ------~~~v~~~~~---~g~v~a~d~~~G~~~W~~~~~-~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~ 274 (394)
T PRK11138 205 ------FGGAIVGGD---NGRVSAVLMEQGQLIWQQRIS-QPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLR 274 (394)
T ss_pred ------CCEEEEEcC---CCEEEEEEccCChhhheeccc-cCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECC
Confidence 122333211 123444555544 4764321 110 000 00000001356678888887777777788765
Q ss_pred CCC--cc-cccceeeecCCceEEEEeccCCeEEEEecCCCc--eeeccccCCccccccceeEeeCCeEEEEE
Q 038464 235 RSP--SK-QYSSVITSKDGEEIVYFLNSCGTIVACNLTQKS--FTEYPRLLPVFSEYSIDVVECRGELLVVV 301 (404)
Q Consensus 235 ~~~--~~-~~~~~~~~~~~~~~~y~~~~~~~i~~fD~~~~~--w~~i~~~~p~~~~~~~~lv~~~g~L~~v~ 301 (404)
.+. |. .+.........++.+|+....+.+.++|.++.+ |+.-. ... . .....+..+|+||+..
T Consensus 275 tG~~~W~~~~~~~~~~~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~--~~~-~-~~~sp~v~~g~l~v~~ 342 (394)
T PRK11138 275 SGQIVWKREYGSVNDFAVDGGRIYLVDQNDRVYALDTRGGVELWSQSD--LLH-R-LLTAPVLYNGYLVVGD 342 (394)
T ss_pred CCCEEEeecCCCccCcEEECCEEEEEcCCCeEEEEECCCCcEEEcccc--cCC-C-cccCCEEECCEEEEEe
Confidence 332 11 111110111124578988888899999998654 76421 111 1 1122345688888654
No 61
>PLN02772 guanylate kinase
Probab=89.38 E-value=1.9 Score=40.71 Aligned_cols=82 Identities=13% Similarity=-0.008 Sum_probs=53.5
Q ss_pred ceeEeeCCeEEEEEeeeccceeeEEEEEEeCCCCCeEEeccCChhHHHHhccCcceEEEEecCCEEEEEEecC-CCceEE
Q 038464 288 IDVVECRGELLVVVLSEFLESASLRVWRFDQDNGFWHQIAAMPPAMSHEFYGKKVDINCVAAGHQIFICFNSA-ELFSYV 366 (404)
Q Consensus 288 ~~lv~~~g~L~~v~~~~~~~~~~~~vw~l~~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~-~~~~~~ 366 (404)
...+..++++|++|+.++.......||.+|..+..|..-.-...... .+...-.|+-.+++|+|+-.+. -...++
T Consensus 28 ~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~----~r~GhSa~v~~~~rilv~~~~~~~~~~~w 103 (398)
T PLN02772 28 ETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPK----PCKGYSAVVLNKDRILVIKKGSAPDDSIW 103 (398)
T ss_pred ceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCC----CCCcceEEEECCceEEEEeCCCCCccceE
Confidence 34578899999999876544467899999999999998654321100 1122234456678887654332 235677
Q ss_pred EEECCCC
Q 038464 367 LCDLVTN 373 (404)
Q Consensus 367 ~yd~~~~ 373 (404)
...++|.
T Consensus 104 ~l~~~t~ 110 (398)
T PLN02772 104 FLEVDTP 110 (398)
T ss_pred EEEcCCH
Confidence 7777763
No 62
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=88.03 E-value=15 Score=32.04 Aligned_cols=113 Identities=14% Similarity=0.113 Sum_probs=60.4
Q ss_pred eEEEEecCCCceeeccccCCccccccceeEeeCCeEEEEEeeeccceeeEEEEEEeCCCCCeEEeccCChhHHHHhccCc
Q 038464 262 TIVACNLTQKSFTEYPRLLPVFSEYSIDVVECRGELLVVVLSEFLESASLRVWRFDQDNGFWHQIAAMPPAMSHEFYGKK 341 (404)
Q Consensus 262 ~i~~fD~~~~~w~~i~~~~p~~~~~~~~lv~~~g~L~~v~~~~~~~~~~~~vw~l~~~~~~W~~v~~~~~~~~~~~~~~~ 341 (404)
.+..|+.++++|+.+....+...... .-+..+|.||-+...... .....|..+|-.+++|.+.-.+|.... ...
T Consensus 71 ~~~Vys~~~~~Wr~~~~~~~~~~~~~-~~v~~~G~lyw~~~~~~~-~~~~~IvsFDl~~E~f~~~i~~P~~~~----~~~ 144 (230)
T TIGR01640 71 EHQVYTLGSNSWRTIECSPPHHPLKS-RGVCINGVLYYLAYTLKT-NPDYFIVSFDVSSERFKEFIPLPCGNS----DSV 144 (230)
T ss_pred cEEEEEeCCCCccccccCCCCccccC-CeEEECCEEEEEEEECCC-CCcEEEEEEEcccceEeeeeecCcccc----ccc
Confidence 67889999999999863222111111 235679999998754311 111257777887778996334453211 001
Q ss_pred ceEEEEecCCEEEEEEecCCCceEEEEECC---CCceEECCC
Q 038464 342 VDINCVAAGHQIFICFNSAELFSYVLCDLV---TNEWVELPK 380 (404)
Q Consensus 342 ~~~~~~~~~~~i~v~~~~~~~~~~~~yd~~---~~~w~~~~~ 380 (404)
.....+..++++.+.........+.++-++ .++|++.-.
T Consensus 145 ~~~~L~~~~G~L~~v~~~~~~~~~~IWvl~d~~~~~W~k~~~ 186 (230)
T TIGR01640 145 DYLSLINYKGKLAVLKQKKDTNNFDLWVLNDAGKQEWSKLFT 186 (230)
T ss_pred cceEEEEECCEEEEEEecCCCCcEEEEEECCCCCCceeEEEE
Confidence 112233345666443332222335555554 457987433
No 63
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=87.76 E-value=1.6 Score=41.86 Aligned_cols=163 Identities=11% Similarity=0.050 Sum_probs=87.0
Q ss_pred EcCCCCCeeeCCCCCC-------CCCCCceeEEEEEecCCCCCceEEEEEeccc---CceEEEEEeCCCCceeecccc--
Q 038464 129 SNPVTGSSRELPPLDA-------DTENQSLHAIVMTTSSKNPSNYKLVLVYGEL---PKLSFKVYNSCLNCWEEETLL-- 196 (404)
Q Consensus 129 ~NP~t~~w~~lP~~~~-------~~~~~~~~~~~~~g~~~~~~~~kv~~~~g~~---~~~~~~vy~~~~~~W~~~~~~-- 196 (404)
--|.+-.|..+|+-.. .+..|..|-++... ..--||..||=+ .-.....|+.+.+.|..+-..
T Consensus 234 q~ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~-----~~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t~ 308 (723)
T KOG2437|consen 234 QQEYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDV-----QTECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDTE 308 (723)
T ss_pred cccccccccccCchhhcccccccCccccCcceEEEeC-----CCcEEEEecCcccchhHHHHHhhcCCcceeEEeecCCC
Confidence 3466777888777652 11233333333221 123456665421 123578899999999977541
Q ss_pred ccc-ccccccccccCCcccc--CCeEEEeecCCceeeecccCCCcccccceeeecCCceEEEEeccCCeEEEEecCCCce
Q 038464 197 LSR-KSEQALEVDSIDHHDD--EDAVYFLSKAGNVVATNMQRSPSKQYSSVITSKDGEEIVYFLNSCGTIVACNLTQKSF 273 (404)
Q Consensus 197 ~p~-~~~~~~~~~~~~~v~~--~G~ly~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~i~~fD~~~~~w 273 (404)
.|. +.+| .+|.. ..++|.+|...+.. . -...++ ...+..||..++.|
T Consensus 309 ~PG~RsCH-------RMVid~S~~KLYLlG~Y~~sS---------~-----r~~~s~---------RsDfW~FDi~~~~W 358 (723)
T KOG2437|consen 309 GPGARSCH-------RMVIDISRRKLYLLGRYLDSS---------V-----RNSKSL---------RSDFWRFDIDTNTW 358 (723)
T ss_pred CCcchhhh-------hhhhhhhHhHHhhhhhccccc---------c-----cccccc---------ccceEEEecCCcee
Confidence 343 3233 12332 34788887542210 0 000011 23689999999999
Q ss_pred eeccccCCc----cccccceeEeeCCe--EEEEEeeec-cc-eeeEEEEEEeCCCCCeEEe
Q 038464 274 TEYPRLLPV----FSEYSIDVVECRGE--LLVVVLSEF-LE-SASLRVWRFDQDNGFWHQI 326 (404)
Q Consensus 274 ~~i~~~~p~----~~~~~~~lv~~~g~--L~~v~~~~~-~~-~~~~~vw~l~~~~~~W~~v 326 (404)
..+...-.. ..-+++++++-+.+ ||+.||... .. ...-.++.++.....|...
T Consensus 359 ~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~~l 419 (723)
T KOG2437|consen 359 MLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRILTCNEPQFSGLYAFNCQCQTWKLL 419 (723)
T ss_pred EEecccccccCCcceeecceeeEecCcceEEEecCeeccCCCccccceEEEecCCccHHHH
Confidence 987422211 11245677776655 999988631 11 1222366667666667653
No 64
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=87.26 E-value=27 Score=33.00 Aligned_cols=67 Identities=18% Similarity=0.420 Sum_probs=38.8
Q ss_pred eeCCeEEEEEeeeccceeeEEEEEEeCCCCCeEEeccCChhHHHHhccCcce----EEEEecCCEEEEEEecCCCceEEE
Q 038464 292 ECRGELLVVVLSEFLESASLRVWRFDQDNGFWHQIAAMPPAMSHEFYGKKVD----INCVAAGHQIFICFNSAELFSYVL 367 (404)
Q Consensus 292 ~~~g~L~~v~~~~~~~~~~~~vw~l~~~~~~W~~v~~~~~~~~~~~~~~~~~----~~~~~~~~~i~v~~~~~~~~~~~~ 367 (404)
.-+|++.++... ...+.+|.+++ |..+... .|.+.. -.|+|.+|.-||. .+..+.++.+
T Consensus 404 S~d~k~~LvnL~----~qei~LWDl~e----~~lv~kY--------~Ghkq~~fiIrSCFgg~~~~fia-SGSED~kvyI 466 (519)
T KOG0293|consen 404 SKDGKLALVNLQ----DQEIHLWDLEE----NKLVRKY--------FGHKQGHFIIRSCFGGGNDKFIA-SGSEDSKVYI 466 (519)
T ss_pred cCCCcEEEEEcc----cCeeEEeecch----hhHHHHh--------hcccccceEEEeccCCCCcceEE-ecCCCceEEE
Confidence 347888887654 36788997773 3333222 222211 1466666655543 3335678888
Q ss_pred EECCCCce
Q 038464 368 CDLVTNEW 375 (404)
Q Consensus 368 yd~~~~~w 375 (404)
++..++.-
T Consensus 467 Whr~sgkl 474 (519)
T KOG0293|consen 467 WHRISGKL 474 (519)
T ss_pred EEccCCce
Confidence 88887765
No 65
>PF13854 Kelch_5: Kelch motif
Probab=85.12 E-value=2.4 Score=25.83 Aligned_cols=33 Identities=12% Similarity=-0.027 Sum_probs=24.5
Q ss_pred cceeEeeCCeEEEEEeeec-cceeeEEEEEEeCC
Q 038464 287 SIDVVECRGELLVVVLSEF-LESASLRVWRFDQD 319 (404)
Q Consensus 287 ~~~lv~~~g~L~~v~~~~~-~~~~~~~vw~l~~~ 319 (404)
.+..+..+++||++||... .....-++|+|+..
T Consensus 7 ~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~ 40 (42)
T PF13854_consen 7 GHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLP 40 (42)
T ss_pred ceEEEEECCEEEEEcCccCCCCCEECcEEEEECC
Confidence 4567788999999998762 34455679998864
No 66
>PLN02772 guanylate kinase
Probab=84.04 E-value=6.9 Score=37.09 Aligned_cols=60 Identities=8% Similarity=-0.005 Sum_probs=42.3
Q ss_pred EEEecCceEEEEeC-------CCeEEEEcCCCCCeeeCCCCCCCCCCCceeEEEEEecCCCCCceEEEEEecc
Q 038464 109 PVAASGGLVCFRTA-------SGKFIVSNPVTGSSRELPPLDADTENQSLHAIVMTTSSKNPSNYKLVLVYGE 174 (404)
Q Consensus 109 ~~~s~~Glv~~~~~-------~~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~g~~~~~~~~kv~~~~g~ 174 (404)
...+.++.+|+.++ .+.++++|+.|++|...+-....+..+..|+.+.++ +-+|+++.+.
T Consensus 29 tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~------~~rilv~~~~ 95 (398)
T PLN02772 29 TSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLN------KDRILVIKKG 95 (398)
T ss_pred eeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEEC------CceEEEEeCC
Confidence 35556777777764 347899999999999776655444555566666665 6788888754
No 67
>smart00284 OLF Olfactomedin-like domains.
Probab=83.56 E-value=32 Score=30.61 Aligned_cols=122 Identities=15% Similarity=0.205 Sum_probs=66.0
Q ss_pred eEEEEecCCCceeeccccCCcc--c---------cccceeEeeCCeEEEEEeeeccceeeEEEEEEeCCC----CCeEEe
Q 038464 262 TIVACNLTQKSFTEYPRLLPVF--S---------EYSIDVVECRGELLVVVLSEFLESASLRVWRFDQDN----GFWHQI 326 (404)
Q Consensus 262 ~i~~fD~~~~~w~~i~~~~p~~--~---------~~~~~lv~~~g~L~~v~~~~~~~~~~~~vw~l~~~~----~~W~~v 326 (404)
.|+.||+.++.-.... .+|.. . .-.+.|++-+.-|.+|-... .....+.|=+||+.+ ..|..
T Consensus 95 ~iiKydL~t~~v~~~~-~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~-~~~g~ivvSkLnp~tL~ve~tW~T- 171 (255)
T smart00284 95 DICRFDLTTETYQKEP-LLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATE-QNAGKIVISKLNPATLTIENTWIT- 171 (255)
T ss_pred cEEEEECCCCcEEEEE-ecCccccccccccccCCCccEEEEEcCCceEEEEecc-CCCCCEEEEeeCcccceEEEEEEc-
Confidence 6999999998764321 13321 1 11256777788888886543 223556777787733 35665
Q ss_pred ccCChhHHHHhccCcceEEEEecCCEEEEEEec---CCCceEEEEECCCCceEECCCCCCCCceeEeeEeeeeccc
Q 038464 327 AAMPPAMSHEFYGKKVDINCVAAGHQIFICFNS---AELFSYVLCDLVTNEWVELPKCSMNGEAVVFMSAFSFEPR 399 (404)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~---~~~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~~p~ 399 (404)
.++.... -.++..-+.+|+. .+ ....-.++||..+++=+. +.+| +.++....+++.|.|+
T Consensus 172 -~~~k~sa---------~naFmvCGvLY~~-~s~~~~~~~I~yayDt~t~~~~~-~~i~-f~n~y~~~s~l~YNP~ 234 (255)
T smart00284 172 -TYNKRSA---------SNAFMICGILYVT-RSLGSKGEKVFYAYDTNTGKEGH-LDIP-FENMYEYISMLDYNPN 234 (255)
T ss_pred -CCCcccc---------cccEEEeeEEEEE-ccCCCCCcEEEEEEECCCCccce-eeee-eccccccceeceeCCC
Confidence 2332110 0122233455543 22 123345789999876432 2333 3445566777777775
No 68
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=82.44 E-value=45 Score=31.51 Aligned_cols=215 Identities=15% Similarity=0.144 Sum_probs=107.6
Q ss_pred EecCceEEEEeCCCeEEEEcCCCCC--ee-eCCCCCCCCCCCceeEEEEEecCCCCCceEEEEEecccCceEEEEEeCCC
Q 038464 111 AASGGLVCFRTASGKFIVSNPVTGS--SR-ELPPLDADTENQSLHAIVMTTSSKNPSNYKLVLVYGELPKLSFKVYNSCL 187 (404)
Q Consensus 111 ~s~~Glv~~~~~~~~~~v~NP~t~~--w~-~lP~~~~~~~~~~~~~~~~~g~~~~~~~~kv~~~~g~~~~~~~~vy~~~~ 187 (404)
...+|.+++......++.+|+.|++ |+ .++... . .+.+. .+.+|++... ...+..+|..+
T Consensus 62 ~v~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~---~----~~p~v-------~~~~v~v~~~---~g~l~ald~~t 124 (377)
T TIGR03300 62 AVAGGKVYAADADGTVVALDAETGKRLWRVDLDERL---S----GGVGA-------DGGLVFVGTE---KGEVIALDAED 124 (377)
T ss_pred EEECCEEEEECCCCeEEEEEccCCcEeeeecCCCCc---c----cceEE-------cCCEEEEEcC---CCEEEEEECCC
Confidence 4457778777656678999999987 54 233211 0 11111 1344554321 24577777755
Q ss_pred C--ceeecccccccccccccccccCCccccCCeEEEeecCCceeeecccCCCc--cc-----------ccceeeecCCce
Q 038464 188 N--CWEEETLLLSRKSEQALEVDSIDHHDDEDAVYFLSKAGNVVATNMQRSPS--KQ-----------YSSVITSKDGEE 252 (404)
Q Consensus 188 ~--~W~~~~~~~p~~~~~~~~~~~~~~v~~~G~ly~~~~~~~~~~~~~~~~~~--~~-----------~~~~~~~~~~~~ 252 (404)
+ .|+.... ..... .++..++.+|+....+.+.++|...+.. .. ..+.+ ..+ .
T Consensus 125 G~~~W~~~~~---~~~~~-------~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~-~~~--~ 191 (377)
T TIGR03300 125 GKELWRAKLS---SEVLS-------PPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPV-IAD--G 191 (377)
T ss_pred CcEeeeeccC---ceeec-------CCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCE-EEC--C
Confidence 4 4864422 11010 2344566666655556666666543211 00 01111 122 3
Q ss_pred EEEEeccCCeEEEEecCCCc--eeeccccCCccc-------cccceeEeeCCeEEEEEeeeccceeeEEEEEEeCCCCCe
Q 038464 253 IVYFLNSCGTIVACNLTQKS--FTEYPRLLPVFS-------EYSIDVVECRGELLVVVLSEFLESASLRVWRFDQDNGFW 323 (404)
Q Consensus 253 ~~y~~~~~~~i~~fD~~~~~--w~~i~~~~p~~~-------~~~~~lv~~~g~L~~v~~~~~~~~~~~~vw~l~~~~~~W 323 (404)
.+|+....+.+.++|+++.. |+.-. ..+... ......+..+|.+|+.... ..+..+..+..+..|
T Consensus 192 ~v~~~~~~g~v~ald~~tG~~~W~~~~-~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~-----g~l~a~d~~tG~~~W 265 (377)
T TIGR03300 192 GVLVGFAGGKLVALDLQTGQPLWEQRV-ALPKGRTELERLVDVDGDPVVDGGQVYAVSYQ-----GRVAALDLRSGRVLW 265 (377)
T ss_pred EEEEECCCCEEEEEEccCCCEeeeecc-ccCCCCCchhhhhccCCccEEECCEEEEEEcC-----CEEEEEECCCCcEEE
Confidence 56666666789999987654 75320 111100 0111234457788875532 233344333444567
Q ss_pred EEeccCChhHHHHhccCcceEEEEecCCEEEEEEecCCCceEEEEECCCCc--eEE
Q 038464 324 HQIAAMPPAMSHEFYGKKVDINCVAAGHQIFICFNSAELFSYVLCDLVTNE--WVE 377 (404)
Q Consensus 324 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~yd~~~~~--w~~ 377 (404)
..-. +. ... .+..++.||+. ...+.++++|.++++ |+.
T Consensus 266 ~~~~--~~---------~~~--p~~~~~~vyv~---~~~G~l~~~d~~tG~~~W~~ 305 (377)
T TIGR03300 266 KRDA--SS---------YQG--PAVDDNRLYVT---DADGVVVALDRRSGSELWKN 305 (377)
T ss_pred eecc--CC---------ccC--ceEeCCEEEEE---CCCCeEEEEECCCCcEEEcc
Confidence 6531 10 001 12346788753 235678899998764 643
No 69
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=81.79 E-value=34 Score=29.62 Aligned_cols=54 Identities=19% Similarity=0.358 Sum_probs=32.8
Q ss_pred CCCceeeeecCCCc--eeeccCCCCCCCeeEEEecCceEEEEeCCCeEEEEcCCCCC--ee
Q 038464 81 QLNHSIVFDSAEKT--WKELNFPNSSPDSIPVAASGGLVCFRTASGKFIVSNPVTGS--SR 137 (404)
Q Consensus 81 ~~~~~~~~d~~~~~--w~~l~~p~~~~~~~~~~s~~Glv~~~~~~~~~~v~NP~t~~--w~ 137 (404)
......++|..+++ |. ...+.. .... ....+|.+++......++.+|..|++ |+
T Consensus 44 ~~~~l~~~d~~tG~~~W~-~~~~~~-~~~~-~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~ 101 (238)
T PF13360_consen 44 GDGNLYALDAKTGKVLWR-FDLPGP-ISGA-PVVDGGRVYVGTSDGSLYALDAKTGKVLWS 101 (238)
T ss_dssp TTSEEEEEETTTSEEEEE-EECSSC-GGSG-EEEETTEEEEEETTSEEEEEETTTSCEEEE
T ss_pred CCCEEEEEECCCCCEEEE-eecccc-ccce-eeecccccccccceeeeEecccCCcceeee
Confidence 33556789986653 44 222221 1112 25566667766655689999999987 66
No 70
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=78.86 E-value=42 Score=28.98 Aligned_cols=107 Identities=18% Similarity=0.155 Sum_probs=46.5
Q ss_pred eEEEEecCCCc--eeeccccCCcc-ccccceeEeeCCeEEEEEeeeccceeeEEEEEEeC--CCCCeEEeccCChhHHHH
Q 038464 262 TIVACNLTQKS--FTEYPRLLPVF-SEYSIDVVECRGELLVVVLSEFLESASLRVWRFDQ--DNGFWHQIAAMPPAMSHE 336 (404)
Q Consensus 262 ~i~~fD~~~~~--w~~i~~~~p~~-~~~~~~lv~~~g~L~~v~~~~~~~~~~~~vw~l~~--~~~~W~~v~~~~~~~~~~ 336 (404)
.+.++|.++.. |+......+.. ..........++.+++.... .. |+.+|. ....|......+.....-
T Consensus 87 ~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----g~--l~~~d~~tG~~~w~~~~~~~~~~~~~ 159 (238)
T PF13360_consen 87 SLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSS-----GK--LVALDPKTGKLLWKYPVGEPRGSSPI 159 (238)
T ss_dssp EEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETC-----SE--EEEEETTTTEEEEEEESSTT-SS--E
T ss_pred eeEecccCCcceeeeeccccccccccccccCceEecCEEEEEecc-----Cc--EEEEecCCCcEEEEeecCCCCCCcce
Confidence 57778866544 77321111211 11112233345666554421 12 555564 444577755554321100
Q ss_pred hccCcceEEEEecCCEEEEEEecCCCceEEEEECCCCc--eEEC
Q 038464 337 FYGKKVDINCVAAGHQIFICFNSAELFSYVLCDLVTNE--WVEL 378 (404)
Q Consensus 337 ~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~yd~~~~~--w~~~ 378 (404)
-.........+..++.+|+. . ..+.++..|..+++ |+.-
T Consensus 160 ~~~~~~~~~~~~~~~~v~~~--~-~~g~~~~~d~~tg~~~w~~~ 200 (238)
T PF13360_consen 160 SSFSDINGSPVISDGRVYVS--S-GDGRVVAVDLATGEKLWSKP 200 (238)
T ss_dssp EEETTEEEEEECCTTEEEEE--C-CTSSEEEEETTTTEEEEEEC
T ss_pred eeecccccceEEECCEEEEE--c-CCCeEEEEECCCCCEEEEec
Confidence 00000111223345677653 2 23335666999987 7443
No 71
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=78.42 E-value=46 Score=29.19 Aligned_cols=202 Identities=15% Similarity=0.117 Sum_probs=98.4
Q ss_pred CceEEEEeC-CCeEEEEcCCCCCeeeCCCCCCCCCCCceeEEEEEecCCCCCceEEEEEecccCceEEEEEeCCCCceee
Q 038464 114 GGLVCFRTA-SGKFIVSNPVTGSSRELPPLDADTENQSLHAIVMTTSSKNPSNYKLVLVYGELPKLSFKVYNSCLNCWEE 192 (404)
Q Consensus 114 ~Glv~~~~~-~~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~g~~~~~~~~kv~~~~g~~~~~~~~vy~~~~~~W~~ 192 (404)
+|.+++... ..+++.++|.+++........ ..++++.. .+.++++... ....++|..++.++.
T Consensus 11 ~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~-------~~G~~~~~-----~~g~l~v~~~----~~~~~~d~~~g~~~~ 74 (246)
T PF08450_consen 11 DGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG-------PNGMAFDR-----PDGRLYVADS----GGIAVVDPDTGKVTV 74 (246)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEEEEESSS-------EEEEEEEC-----TTSEEEEEET----TCEEEEETTTTEEEE
T ss_pred CCEEEEEEcCCCEEEEEECCCCeEEEEecCC-------CceEEEEc-----cCCEEEEEEc----CceEEEecCCCcEEE
Confidence 566666664 678999999998876433222 13343321 1355666532 345667999999988
Q ss_pred ccccccccc-ccccccccCCccccCCeEEEeecCCceeeecccCCCcccccceeeecCCceEEEEeccCCeEEEEecCCC
Q 038464 193 ETLLLSRKS-EQALEVDSIDHHDDEDAVYFLSKAGNVVATNMQRSPSKQYSSVITSKDGEEIVYFLNSCGTIVACNLTQK 271 (404)
Q Consensus 193 ~~~~~p~~~-~~~~~~~~~~~v~~~G~ly~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~i~~fD~~~~ 271 (404)
+.. .+... ....|-+ -.+.-+|.+|+-...... ..... .+.+..++.. .
T Consensus 75 ~~~-~~~~~~~~~~~ND--~~vd~~G~ly~t~~~~~~---------~~~~~-----------------~g~v~~~~~~-~ 124 (246)
T PF08450_consen 75 LAD-LPDGGVPFNRPND--VAVDPDGNLYVTDSGGGG---------ASGID-----------------PGSVYRIDPD-G 124 (246)
T ss_dssp EEE-EETTCSCTEEEEE--EEE-TTS-EEEEEECCBC---------TTCGG-----------------SEEEEEEETT-S
T ss_pred Eee-ccCCCcccCCCce--EEEcCCCCEEEEecCCCc---------ccccc-----------------ccceEEECCC-C
Confidence 876 32100 0000110 134557777664332110 00000 0258888888 4
Q ss_pred ceeeccccCCccccccceeEee-CC-eEEEEEeeeccceeeEEEEEEeC--CCCCeEEe---ccCChhHHHHhccCcceE
Q 038464 272 SFTEYPRLLPVFSEYSIDVVEC-RG-ELLVVVLSEFLESASLRVWRFDQ--DNGFWHQI---AAMPPAMSHEFYGKKVDI 344 (404)
Q Consensus 272 ~w~~i~~~~p~~~~~~~~lv~~-~g-~L~~v~~~~~~~~~~~~vw~l~~--~~~~W~~v---~~~~~~~~~~~~~~~~~~ 344 (404)
+...+...+.. .-.|+.. +| .||+.... ... ||+++. ....+... ..++... ...+=
T Consensus 125 ~~~~~~~~~~~----pNGi~~s~dg~~lyv~ds~----~~~--i~~~~~~~~~~~~~~~~~~~~~~~~~------g~pDG 188 (246)
T PF08450_consen 125 KVTVVADGLGF----PNGIAFSPDGKTLYVADSF----NGR--IWRFDLDADGGELSNRRVFIDFPGGP------GYPDG 188 (246)
T ss_dssp EEEEEEEEESS----EEEEEEETTSSEEEEEETT----TTE--EEEEEEETTTCCEEEEEEEEE-SSSS------CEEEE
T ss_pred eEEEEecCccc----ccceEECCcchheeecccc----cce--eEEEeccccccceeeeeeEEEcCCCC------cCCCc
Confidence 44443211111 1123332 45 46654322 223 555554 44334432 2333110 01122
Q ss_pred EEEecCCEEEEEEecCCCceEEEEECCCCceEECC
Q 038464 345 NCVAAGHQIFICFNSAELFSYVLCDLVTNEWVELP 379 (404)
Q Consensus 345 ~~~~~~~~i~v~~~~~~~~~~~~yd~~~~~w~~~~ 379 (404)
.++..++.||+.... .+.+.+||++.+....++
T Consensus 189 ~~vD~~G~l~va~~~--~~~I~~~~p~G~~~~~i~ 221 (246)
T PF08450_consen 189 LAVDSDGNLWVADWG--GGRIVVFDPDGKLLREIE 221 (246)
T ss_dssp EEEBTTS-EEEEEET--TTEEEEEETTSCEEEEEE
T ss_pred ceEcCCCCEEEEEcC--CCEEEEECCCccEEEEEc
Confidence 344556788876543 678999999966566554
No 72
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=77.43 E-value=55 Score=29.55 Aligned_cols=53 Identities=21% Similarity=0.193 Sum_probs=30.7
Q ss_pred CeEEEEcCCCCCeeeCCCCCCCCCCCceeEEEEEecCCCCCceEEEEEecccCceEEEEEeCCCC
Q 038464 124 GKFIVSNPVTGSSRELPPLDADTENQSLHAIVMTTSSKNPSNYKLVLVYGELPKLSFKVYNSCLN 188 (404)
Q Consensus 124 ~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~g~~~~~~~~kv~~~~g~~~~~~~~vy~~~~~ 188 (404)
..+.|||..|..-...-|++. . +...+ .|.+ +.+.++.||- .+.+.||+..+.
T Consensus 77 GklIvWDs~TtnK~haipl~s---~--WVMtC--A~sP---Sg~~VAcGGL--dN~Csiy~ls~~ 129 (343)
T KOG0286|consen 77 GKLIVWDSFTTNKVHAIPLPS---S--WVMTC--AYSP---SGNFVACGGL--DNKCSIYPLSTR 129 (343)
T ss_pred CeEEEEEcccccceeEEecCc---e--eEEEE--EECC---CCCeEEecCc--CceeEEEecccc
Confidence 356799999866554444541 2 22222 2333 3455776664 467889998753
No 73
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=77.43 E-value=20 Score=34.28 Aligned_cols=96 Identities=10% Similarity=0.108 Sum_probs=54.0
Q ss_pred CeEEEEecCCCceeeccccCCcccccccee--EeeCCeEEEEEeeeccceeeEEEEEEeCCCCCeEEeccCChhHHHHhc
Q 038464 261 GTIVACNLTQKSFTEYPRLLPVFSEYSIDV--VECRGELLVVVLSEFLESASLRVWRFDQDNGFWHQIAAMPPAMSHEFY 338 (404)
Q Consensus 261 ~~i~~fD~~~~~w~~i~~~~p~~~~~~~~l--v~~~g~L~~v~~~~~~~~~~~~vw~l~~~~~~W~~v~~~~~~~~~~~~ 338 (404)
..+.+||+++.+..++..+--. .+..... |.-.+...++.|.. .. |..|...++.|..-..|+
T Consensus 280 ky~ysyDle~ak~~k~~~~~g~-e~~~~e~FeVShd~~fia~~G~~----G~--I~lLhakT~eli~s~Kie-------- 344 (514)
T KOG2055|consen 280 KYLYSYDLETAKVTKLKPPYGV-EEKSMERFEVSHDSNFIAIAGNN----GH--IHLLHAKTKELITSFKIE-------- 344 (514)
T ss_pred eEEEEeeccccccccccCCCCc-ccchhheeEecCCCCeEEEcccC----ce--EEeehhhhhhhhheeeec--------
Confidence 4688999999998887532111 1111211 23345544444432 12 555666667787777776
Q ss_pred cCcceEEEEecCCEEEEEEecCCCceEEEEECCCCc
Q 038464 339 GKKVDINCVAAGHQIFICFNSAELFSYVLCDLVTNE 374 (404)
Q Consensus 339 ~~~~~~~~~~~~~~i~v~~~~~~~~~~~~yd~~~~~ 374 (404)
+.-.++.....+..|+++ +..+.++++|++++.
T Consensus 345 G~v~~~~fsSdsk~l~~~---~~~GeV~v~nl~~~~ 377 (514)
T KOG2055|consen 345 GVVSDFTFSSDSKELLAS---GGTGEVYVWNLRQNS 377 (514)
T ss_pred cEEeeEEEecCCcEEEEE---cCCceEEEEecCCcc
Confidence 222233333455555543 335689999999863
No 74
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=76.87 E-value=1.8 Score=40.81 Aligned_cols=35 Identities=31% Similarity=0.566 Sum_probs=32.9
Q ss_pred cChHHHHHHHHhcCChhhhhHhhhcchhhhhccCC
Q 038464 24 ELNQDLLERVLSWLPTSTFFRLSSVCKRWKSVADS 58 (404)
Q Consensus 24 ~LP~dll~~Il~rLp~~~l~r~~~Vck~W~~li~~ 58 (404)
.||.+++..|++-|..+++.|++.+|+.|+-+..+
T Consensus 74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD 108 (483)
T KOG4341|consen 74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALD 108 (483)
T ss_pred cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhc
Confidence 58999999999999999999999999999988765
No 75
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=75.94 E-value=60 Score=29.20 Aligned_cols=219 Identities=14% Similarity=0.090 Sum_probs=110.8
Q ss_pred eeecCCCceeeccCCCCCCCeeEEEecCceEEEEeCCCeEEEEcCCCCCeeeCCCCCCCCCCCceeEEEEEecCCCCCce
Q 038464 87 VFDSAEKTWKELNFPNSSPDSIPVAASGGLVCFRTASGKFIVSNPVTGSSRELPPLDADTENQSLHAIVMTTSSKNPSNY 166 (404)
Q Consensus 87 ~~d~~~~~w~~l~~p~~~~~~~~~~s~~Glv~~~~~~~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~g~~~~~~~~ 166 (404)
-+||.+++....|++.+.....++.--+|-..+.....-+..++|.|.+..+.|-+......... .++| |. ..
T Consensus 87 hLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpkt~evt~f~lp~~~a~~nle--t~vf--D~---~G 159 (353)
T COG4257 87 HLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGLAIGRLDPKTLEVTRFPLPLEHADANLE--TAVF--DP---WG 159 (353)
T ss_pred ecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcceeEEecCcccceEEeecccccCCCccc--ceee--CC---Cc
Confidence 36888888888888776544443333334333333333677789988887765544311111111 1122 22 22
Q ss_pred EEEEEe-----cc-c-CceEEEEEeCCCCceeecccccccccccccccccCCccccCCeEEEeecCCceeeecccCCCcc
Q 038464 167 KLVLVY-----GE-L-PKLSFKVYNSCLNCWEEETLLLSRKSEQALEVDSIDHHDDEDAVYFLSKAGNVVATNMQRSPSK 239 (404)
Q Consensus 167 kv~~~~-----g~-~-~~~~~~vy~~~~~~W~~~~~~~p~~~~~~~~~~~~~~v~~~G~ly~~~~~~~~~~~~~~~~~~~ 239 (404)
++-..+ |. + .+..+++|..-.+ ..++. -.+.-||.+|+-.-.+
T Consensus 160 ~lWFt~q~G~yGrLdPa~~~i~vfpaPqG----------~gpyG-------i~atpdGsvwyaslag------------- 209 (353)
T COG4257 160 NLWFTGQIGAYGRLDPARNVISVFPAPQG----------GGPYG-------ICATPDGSVWYASLAG------------- 209 (353)
T ss_pred cEEEeeccccceecCcccCceeeeccCCC----------CCCcc-------eEECCCCcEEEEeccc-------------
Confidence 333222 11 0 1223444433211 11121 1356678886643222
Q ss_pred cccceeeecCCceEEEEeccCCeEEEEecCCCceeeccccCCcccc-cccee-EeeCCeEEEEEeeeccceeeEEEEEEe
Q 038464 240 QYSSVITSKDGEEIVYFLNSCGTIVACNLTQKSFTEYPRLLPVFSE-YSIDV-VECRGELLVVVLSEFLESASLRVWRFD 317 (404)
Q Consensus 240 ~~~~~~~~~~~~~~~y~~~~~~~i~~fD~~~~~w~~i~~~~p~~~~-~~~~l-v~~~g~L~~v~~~~~~~~~~~~vw~l~ 317 (404)
+.|...|+.+..=..++. |..+. ....+ +..-|++.+-.- ..-.+..+|
T Consensus 210 ---------------------naiaridp~~~~aev~p~--P~~~~~gsRriwsdpig~~wittw------g~g~l~rfd 260 (353)
T COG4257 210 ---------------------NAIARIDPFAGHAEVVPQ--PNALKAGSRRIWSDPIGRAWITTW------GTGSLHRFD 260 (353)
T ss_pred ---------------------cceEEcccccCCcceecC--CCcccccccccccCccCcEEEecc------CCceeeEeC
Confidence 267778888775555533 33211 11112 223566665421 122367778
Q ss_pred CCCCCeEEeccCChhHHHHhccCcceEEEEecCCEEEEEEecCCCceEEEEECCCCceEECCC
Q 038464 318 QDNGFWHQIAAMPPAMSHEFYGKKVDINCVAAGHQIFICFNSAELFSYVLCDLVTNEWVELPK 380 (404)
Q Consensus 318 ~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~yd~~~~~w~~~~~ 380 (404)
+...+|.+.. +|.. ..+..-..+-..+++ ++.+-..+.+.-+|+++-+.+.++.
T Consensus 261 Ps~~sW~eyp-LPgs------~arpys~rVD~~grV--W~sea~agai~rfdpeta~ftv~p~ 314 (353)
T COG4257 261 PSVTSWIEYP-LPGS------KARPYSMRVDRHGRV--WLSEADAGAIGRFDPETARFTVLPI 314 (353)
T ss_pred cccccceeee-CCCC------CCCcceeeeccCCcE--EeeccccCceeecCcccceEEEecC
Confidence 8777898764 4421 001001122334566 4455556788999999999988765
No 76
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=73.56 E-value=69 Score=29.12 Aligned_cols=103 Identities=15% Similarity=0.253 Sum_probs=58.5
Q ss_pred CCeEEEEecCCCceeec-cccCCcccccc---ceeEe--eCCeEEEEEeeeccceeeEEEEEEeCCCCCeEEeccCChhH
Q 038464 260 CGTIVACNLTQKSFTEY-PRLLPVFSEYS---IDVVE--CRGELLVVVLSEFLESASLRVWRFDQDNGFWHQIAAMPPAM 333 (404)
Q Consensus 260 ~~~i~~fD~~~~~w~~i-~~~~p~~~~~~---~~lv~--~~g~L~~v~~~~~~~~~~~~vw~l~~~~~~W~~v~~~~~~~ 333 (404)
-.-|..||.++++-+.+ .........+. ..|.. ++++|++...-+ -..+.||.++..++.=+++.+-|..-
T Consensus 77 YSHVH~yd~e~~~VrLLWkesih~~~~WaGEVSdIlYdP~~D~LLlAR~DG---h~nLGvy~ldr~~g~~~~L~~~ps~K 153 (339)
T PF09910_consen 77 YSHVHEYDTENDSVRLLWKESIHDKTKWAGEVSDILYDPYEDRLLLARADG---HANLGVYSLDRRTGKAEKLSSNPSLK 153 (339)
T ss_pred cceEEEEEcCCCeEEEEEecccCCccccccchhheeeCCCcCEEEEEecCC---cceeeeEEEcccCCceeeccCCCCcC
Confidence 35799999988773322 00011111111 12332 578998876432 46788999998666666665555320
Q ss_pred HHHhccCcceEEEEecCCEEEEEEecCCCceEEEEECCCCce
Q 038464 334 SHEFYGKKVDINCVAAGHQIFICFNSAELFSYVLCDLVTNEW 375 (404)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~yd~~~~~w 375 (404)
- ....+..|++. +.. . .+...+.|||+.+++|
T Consensus 154 G----~~~~D~a~F~i-~~~--~---~g~~~i~~~Dli~~~~ 185 (339)
T PF09910_consen 154 G----TLVHDYACFGI-NNF--H---KGVSGIHCLDLISGKW 185 (339)
T ss_pred c----eEeeeeEEEec-ccc--c---cCCceEEEEEccCCeE
Confidence 0 01123445555 332 1 2356899999999999
No 77
>PRK04792 tolB translocation protein TolB; Provisional
Probab=70.98 E-value=1.1e+02 Score=29.94 Aligned_cols=103 Identities=14% Similarity=0.161 Sum_probs=53.3
Q ss_pred eEEEEecCCCceeeccccCCccccccceeEeeCCe-EEEEEeeeccceeeEEEEEEeCCCCCeEEeccCChhHHHHhccC
Q 038464 262 TIVACNLTQKSFTEYPRLLPVFSEYSIDVVECRGE-LLVVVLSEFLESASLRVWRFDQDNGFWHQIAAMPPAMSHEFYGK 340 (404)
Q Consensus 262 ~i~~fD~~~~~w~~i~~~~p~~~~~~~~lv~~~g~-L~~v~~~~~~~~~~~~vw~l~~~~~~W~~v~~~~~~~~~~~~~~ 340 (404)
.|..+|++++....+.... ...... ...-+|+ |++.... ....+||.++..+++++++..-.. .
T Consensus 287 ~Iy~~dl~tg~~~~lt~~~--~~~~~p-~wSpDG~~I~f~s~~----~g~~~Iy~~dl~~g~~~~Lt~~g~--------~ 351 (448)
T PRK04792 287 EIYVVDIATKALTRITRHR--AIDTEP-SWHPDGKSLIFTSER----GGKPQIYRVNLASGKVSRLTFEGE--------Q 351 (448)
T ss_pred EEEEEECCCCCeEECccCC--CCccce-EECCCCCEEEEEECC----CCCceEEEEECCCCCEEEEecCCC--------C
Confidence 5777888887776653211 110111 1222554 4443321 123579999887777877642110 0
Q ss_pred cceEEEEecCCEEEEEEecCCCceEEEEECCCCceEECC
Q 038464 341 KVDINCVAAGHQIFICFNSAELFSYVLCDLVTNEWVELP 379 (404)
Q Consensus 341 ~~~~~~~~~~~~i~v~~~~~~~~~~~~yd~~~~~w~~~~ 379 (404)
.........|+.|++.........++.+|+++++.+.+.
T Consensus 352 ~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt 390 (448)
T PRK04792 352 NLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLT 390 (448)
T ss_pred CcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEcc
Confidence 011122234566654333333457788999888776653
No 78
>PF13013 F-box-like_2: F-box-like domain
Probab=70.90 E-value=5.1 Score=30.39 Aligned_cols=30 Identities=20% Similarity=0.506 Sum_probs=26.0
Q ss_pred CcccChHHHHHHHHhcCChhhhhHhhhcch
Q 038464 21 SMEELNQDLLERVLSWLPTSTFFRLSSVCK 50 (404)
Q Consensus 21 ~~~~LP~dll~~Il~rLp~~~l~r~~~Vck 50 (404)
.+.+||+||++.|+..-.-..+..+...|+
T Consensus 21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 377899999999999999988877777776
No 79
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.80 E-value=95 Score=29.21 Aligned_cols=153 Identities=14% Similarity=0.156 Sum_probs=74.0
Q ss_pred EecCceEEEEeCCCeEEEEcCCCCCeeeCCCCCCCCCCCceeEEEEEecCCCCCceEEEEEecccCceEEEEEeCCCC--
Q 038464 111 AASGGLVCFRTASGKFIVSNPVTGSSRELPPLDADTENQSLHAIVMTTSSKNPSNYKLVLVYGELPKLSFKVYNSCLN-- 188 (404)
Q Consensus 111 ~s~~Glv~~~~~~~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~g~~~~~~~~kv~~~~g~~~~~~~~vy~~~~~-- 188 (404)
.-.+|.|.....+.++.+++-..+.-+.=|.... ....++..+...+ ..--|++.||....+.+++||++..
T Consensus 112 ~~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~l----a~g~g~~~~r~~~--~~p~Iva~GGke~~n~lkiwdle~~~q 185 (412)
T KOG3881|consen 112 KLADGTLITCVSSGNLQVRHDKSGDLHSSKLIKL----ATGPGLYDVRQTD--TDPYIVATGGKENINELKIWDLEQSKQ 185 (412)
T ss_pred hhcCCEEEEEecCCcEEEEeccCCccccccceee----ecCCceeeeccCC--CCCceEecCchhcccceeeeeccccee
Confidence 3346666666567778888777555332222221 0011232332111 1233667777655688999999764
Q ss_pred ceeeccccccc-ccccccccccCCccccCC--eEEEe--ecCCceeeecccC--CCccccc------ceeeecCCceEEE
Q 038464 189 CWEEETLLLSR-KSEQALEVDSIDHHDDED--AVYFL--SKAGNVVATNMQR--SPSKQYS------SVITSKDGEEIVY 255 (404)
Q Consensus 189 ~W~~~~~~~p~-~~~~~~~~~~~~~v~~~G--~ly~~--~~~~~~~~~~~~~--~~~~~~~------~~~~~~~~~~~~y 255 (404)
-|+.-- .|- .-.-..|...++..++.| .-.++ +....+..||+.. .+-..+. +.+....++.++|
T Consensus 186 iw~aKN--vpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy 263 (412)
T KOG3881|consen 186 IWSAKN--VPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIY 263 (412)
T ss_pred eeeccC--CCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEE
Confidence 455322 221 001112332335566766 33333 3345556777652 1111110 1122223355666
Q ss_pred EeccCCeEEEEecCCC
Q 038464 256 FLNSCGTIVACNLTQK 271 (404)
Q Consensus 256 ~~~~~~~i~~fD~~~~ 271 (404)
+-+....+..||..+.
T Consensus 264 ~gn~~g~l~~FD~r~~ 279 (412)
T KOG3881|consen 264 TGNTKGQLAKFDLRGG 279 (412)
T ss_pred EecccchhheecccCc
Confidence 6666666777777654
No 80
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=63.99 E-value=93 Score=29.07 Aligned_cols=118 Identities=19% Similarity=0.310 Sum_probs=62.4
Q ss_pred ceEEEEecc-CCeEEEEecC--CCceeeccc--cCCcc--cc-ccceeEee-CCeEEEEEeeeccceeeEEEEEEeCCCC
Q 038464 251 EEIVYFLNS-CGTIVACNLT--QKSFTEYPR--LLPVF--SE-YSIDVVEC-RGELLVVVLSEFLESASLRVWRFDQDNG 321 (404)
Q Consensus 251 ~~~~y~~~~-~~~i~~fD~~--~~~w~~i~~--~~p~~--~~-~~~~lv~~-~g~L~~v~~~~~~~~~~~~vw~l~~~~~ 321 (404)
+.++|++++ .+.|..|+.. +..++.+.. .+|.. .. ....|+.. +|+...+.... ...+.++.++..++
T Consensus 203 g~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~---~~sI~vf~~d~~~g 279 (345)
T PF10282_consen 203 GKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG---SNSISVFDLDPATG 279 (345)
T ss_dssp SSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT---TTEEEEEEECTTTT
T ss_pred cCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc---CCEEEEEEEecCCC
Confidence 445666654 3567777666 555655422 12221 11 12345444 55533333322 56888999988766
Q ss_pred CeEEeccCChhHHHHhccCc-ceEEEEecCCEEEEEEecCCCceEEEEEC--CCCceEECC
Q 038464 322 FWHQIAAMPPAMSHEFYGKK-VDINCVAAGHQIFICFNSAELFSYVLCDL--VTNEWVELP 379 (404)
Q Consensus 322 ~W~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~i~v~~~~~~~~~~~~yd~--~~~~w~~~~ 379 (404)
..+.+..++.. +.. +.+...-.|+.+|+. ....+.+.+|+. +++.++.+.
T Consensus 280 ~l~~~~~~~~~------G~~Pr~~~~s~~g~~l~Va--~~~s~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 280 TLTLVQTVPTG------GKFPRHFAFSPDGRYLYVA--NQDSNTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp TEEEEEEEEES------SSSEEEEEE-TTSSEEEEE--ETTTTEEEEEEEETTTTEEEEEE
T ss_pred ceEEEEEEeCC------CCCccEEEEeCCCCEEEEE--ecCCCeEEEEEEeCCCCcEEEec
Confidence 77777666521 111 122322346667653 234567888855 577776654
No 81
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=62.18 E-value=1.2e+02 Score=27.44 Aligned_cols=104 Identities=9% Similarity=0.051 Sum_probs=57.0
Q ss_pred eeeeecCCCceeeccCCC-CCCCeeEEEecCceEEEEeC-------CCeEEEEcCCCCCeeeCCCCCCCCCCCceeEEEE
Q 038464 85 SIVFDSAEKTWKELNFPN-SSPDSIPVAASGGLVCFRTA-------SGKFIVSNPVTGSSRELPPLDADTENQSLHAIVM 156 (404)
Q Consensus 85 ~~~~d~~~~~w~~l~~p~-~~~~~~~~~s~~Glv~~~~~-------~~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~ 156 (404)
.+.||...++|.++.... +..... .-..+..|++.+. ...+..||..+++|..++............++..
T Consensus 18 lC~yd~~~~qW~~~g~~i~G~V~~l-~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~~~ 96 (281)
T PF12768_consen 18 LCLYDTDNSQWSSPGNGISGTVTDL-QWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTALTF 96 (281)
T ss_pred EEEEECCCCEeecCCCCceEEEEEE-EEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEEEe
Confidence 357899999999765432 111111 1123455555543 3468899999999998887320001122223322
Q ss_pred EecCCCCCceEEEEEecc-cCceEEEEEeCCCCceeeccc
Q 038464 157 TTSSKNPSNYKLVLVYGE-LPKLSFKVYNSCLNCWEEETL 195 (404)
Q Consensus 157 ~g~~~~~~~~kv~~~~g~-~~~~~~~vy~~~~~~W~~~~~ 195 (404)
.. .+..++++.|.. .....+..| +..+|..+..
T Consensus 97 ~~----~d~~~~~~aG~~~~g~~~l~~~--dGs~W~~i~~ 130 (281)
T PF12768_consen 97 IS----NDGSNFWVAGRSANGSTFLMKY--DGSSWSSIGS 130 (281)
T ss_pred ec----cCCceEEEeceecCCCceEEEE--cCCceEeccc
Confidence 22 234566766543 122346666 5568998875
No 82
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=61.00 E-value=1.4e+02 Score=27.71 Aligned_cols=50 Identities=22% Similarity=0.346 Sum_probs=30.3
Q ss_pred eEEEEecCCCceeeccccCCccccccceeEeeCCeEEEEEeeeccceeeEEEEEEeCC
Q 038464 262 TIVACNLTQKSFTEYPRLLPVFSEYSIDVVECRGELLVVVLSEFLESASLRVWRFDQD 319 (404)
Q Consensus 262 ~i~~fD~~~~~w~~i~~~~p~~~~~~~~lv~~~g~L~~v~~~~~~~~~~~~vw~l~~~ 319 (404)
.|-..|+.+..+..+ +..+. ..+.-+.++|+|.+-|..+ ..+++|...-+
T Consensus 341 TikvW~~st~efvRt---l~gHk-RGIAClQYr~rlvVSGSSD----ntIRlwdi~~G 390 (499)
T KOG0281|consen 341 TIKVWSTSTCEFVRT---LNGHK-RGIACLQYRDRLVVSGSSD----NTIRLWDIECG 390 (499)
T ss_pred eEEEEeccceeeehh---hhccc-ccceehhccCeEEEecCCC----ceEEEEecccc
Confidence 677778877766543 22222 1233356899988765443 68889965543
No 83
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=60.77 E-value=1.2e+02 Score=26.79 Aligned_cols=31 Identities=10% Similarity=0.162 Sum_probs=18.7
Q ss_pred EEEECCCCceEECCCCCCCCceeEeeEeeeecc
Q 038464 366 VLCDLVTNEWVELPKCSMNGEAVVFMSAFSFEP 398 (404)
Q Consensus 366 ~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~~p 398 (404)
.+||..+++-+.+. +| +.+.....+++.|.|
T Consensus 197 yaydt~~~~~~~~~-ip-f~N~y~~~~~idYNP 227 (249)
T KOG3545|consen 197 YAYDTTTGTQERID-LP-FPNPYSYATMIDYNP 227 (249)
T ss_pred EEEEcCCCceeccc-cc-ccchhhhhhccCCCc
Confidence 68999988875443 33 333344455566666
No 84
>PRK04043 tolB translocation protein TolB; Provisional
Probab=59.36 E-value=1.7e+02 Score=28.23 Aligned_cols=194 Identities=12% Similarity=0.081 Sum_probs=98.9
Q ss_pred CCeEEEEcCCCCCeeeCCCCCCCCCCCceeEEEEEecCCCCCceEEEEEecccCceEEEEEeCCCCceeecccccccccc
Q 038464 123 SGKFIVSNPVTGSSRELPPLDADTENQSLHAIVMTTSSKNPSNYKLVLVYGELPKLSFKVYNSCLNCWEEETLLLSRKSE 202 (404)
Q Consensus 123 ~~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~g~~~~~~~~kv~~~~g~~~~~~~~vy~~~~~~W~~~~~~~p~~~~ 202 (404)
..+++++|+.|++-+.|...+ .. .... .+ +++.-+++..........+.+++..++.++.+.. .+.. .
T Consensus 212 ~~~Iyv~dl~tg~~~~lt~~~---g~--~~~~-~~----SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~-~~~~-d 279 (419)
T PRK04043 212 KPTLYKYNLYTGKKEKIASSQ---GM--LVVS-DV----SKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITN-YPGI-D 279 (419)
T ss_pred CCEEEEEECCCCcEEEEecCC---Cc--EEee-EE----CCCCCEEEEEEccCCCcEEEEEECCCCcEEEccc-CCCc-c
Confidence 357888998888877776433 11 1111 11 2233344443322234578888988888887765 2211 0
Q ss_pred cccccccCCccccCC-eEEEeecCCceeeecccCCCcccccceeeecCCceEEEEeccCCeEEEEecCCCceeeccccCC
Q 038464 203 QALEVDSIDHHDDED-AVYFLSKAGNVVATNMQRSPSKQYSSVITSKDGEEIVYFLNSCGTIVACNLTQKSFTEYPRLLP 281 (404)
Q Consensus 203 ~~~~~~~~~~v~~~G-~ly~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~i~~fD~~~~~w~~i~~~~p 281 (404)
.. ....-|| .+|+.....+ ...|..+|+.+.....+...
T Consensus 280 ~~------p~~SPDG~~I~F~Sdr~g--------------------------------~~~Iy~~dl~~g~~~rlt~~-- 319 (419)
T PRK04043 280 VN------GNFVEDDKRIVFVSDRLG--------------------------------YPNIFMKKLNSGSVEQVVFH-- 319 (419)
T ss_pred Cc------cEECCCCCEEEEEECCCC--------------------------------CceEEEEECCCCCeEeCccC--
Confidence 00 0123345 3665543211 11577778877776554211
Q ss_pred ccccccceeEeeCCe-EEEEEeeeccc--eeeEEEEEEeCCCCCeEEeccCChhHHHHhccCcceEEEEecCCEEEEEEe
Q 038464 282 VFSEYSIDVVECRGE-LLVVVLSEFLE--SASLRVWRFDQDNGFWHQIAAMPPAMSHEFYGKKVDINCVAAGHQIFICFN 358 (404)
Q Consensus 282 ~~~~~~~~lv~~~g~-L~~v~~~~~~~--~~~~~vw~l~~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~ 358 (404)
..+.. ...-+|+ |.++....... ....+||.++.++..+..+..-.. ...+...-.|..|++.-.
T Consensus 320 --g~~~~-~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~~---------~~~p~~SPDG~~I~f~~~ 387 (419)
T PRK04043 320 --GKNNS-SVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTANGV---------NQFPRFSSDGGSIMFIKY 387 (419)
T ss_pred --CCcCc-eECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCCCC---------cCCeEECCCCCEEEEEEc
Confidence 11112 1222454 44433221111 134789999987777777765321 111233334556654433
Q ss_pred cCCCceEEEEECCCCceEECCC
Q 038464 359 SAELFSYVLCDLVTNEWVELPK 380 (404)
Q Consensus 359 ~~~~~~~~~yd~~~~~w~~~~~ 380 (404)
.+....+.+.+++.+.=..++.
T Consensus 388 ~~~~~~L~~~~l~g~~~~~l~~ 409 (419)
T PRK04043 388 LGNQSALGIIRLNYNKSFLFPL 409 (419)
T ss_pred cCCcEEEEEEecCCCeeEEeec
Confidence 3445568888998765555554
No 85
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=57.64 E-value=1.4e+02 Score=26.70 Aligned_cols=174 Identities=12% Similarity=0.061 Sum_probs=83.2
Q ss_pred EEEEEecccCceEEEEEeCCCCceeecccccccccccccccccCCccccCCeEEEeecCCceeeecccCCCcccccceee
Q 038464 167 KLVLVYGELPKLSFKVYNSCLNCWEEETLLLSRKSEQALEVDSIDHHDDEDAVYFLSKAGNVVATNMQRSPSKQYSSVIT 246 (404)
Q Consensus 167 kv~~~~g~~~~~~~~vy~~~~~~W~~~~~~~p~~~~~~~~~~~~~~v~~~G~ly~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (404)
.++--.|......+..||+++++=..... +|...-. -+.+.+++++|-++...+
T Consensus 57 ~LyESTG~yG~S~l~~~d~~tg~~~~~~~-l~~~~Fg------EGit~~~d~l~qLTWk~~------------------- 110 (264)
T PF05096_consen 57 TLYESTGLYGQSSLRKVDLETGKVLQSVP-LPPRYFG------EGITILGDKLYQLTWKEG------------------- 110 (264)
T ss_dssp EEEEEECSTTEEEEEEEETTTSSEEEEEE--TTT--E------EEEEEETTEEEEEESSSS-------------------
T ss_pred EEEEeCCCCCcEEEEEEECCCCcEEEEEE-CCccccc------eeEEEECCEEEEEEecCC-------------------
Confidence 34443344456789999999987544444 5542111 134677889998876432
Q ss_pred ecCCceEEEEeccCCeEEEEecCCCceeeccc-cCCccccccceeEeeCCeEEEEEeeeccceeeEEEEEEeCCCCCeEE
Q 038464 247 SKDGEEIVYFLNSCGTIVACNLTQKSFTEYPR-LLPVFSEYSIDVVECRGELLVVVLSEFLESASLRVWRFDQDNGFWHQ 325 (404)
Q Consensus 247 ~~~~~~~~y~~~~~~~i~~fD~~~~~w~~i~~-~~p~~~~~~~~lv~~~g~L~~v~~~~~~~~~~~~vw~l~~~~~~W~~ 325 (404)
..+.||..+ +..+.. ..+.. .-.|..-+.+|++-.|.+ .++.+|+.+ ...
T Consensus 111 ---------------~~f~yd~~t--l~~~~~~~y~~E---GWGLt~dg~~Li~SDGS~-------~L~~~dP~~--f~~ 161 (264)
T PF05096_consen 111 ---------------TGFVYDPNT--LKKIGTFPYPGE---GWGLTSDGKRLIMSDGSS-------RLYFLDPET--FKE 161 (264)
T ss_dssp ---------------EEEEEETTT--TEEEEEEE-SSS-----EEEECSSCEEEE-SSS-------EEEEE-TTT---SE
T ss_pred ---------------eEEEEcccc--ceEEEEEecCCc---ceEEEcCCCEEEEECCcc-------ceEEECCcc--cce
Confidence 466677654 222211 12221 134555556666655432 266667753 333
Q ss_pred eccCChhHHHHhccCcceEEEEecCCEEEEEEecCCCceEEEEECCCCceEECCCCC-------CCCc---eeEeeEeee
Q 038464 326 IAAMPPAMSHEFYGKKVDINCVAAGHQIFICFNSAELFSYVLCDLVTNEWVELPKCS-------MNGE---AVVFMSAFS 395 (404)
Q Consensus 326 v~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~yd~~~~~w~~~~~~~-------~~~~---~~~~~~~~~ 395 (404)
+.++.......-...-+.+.++ ++.||- .--....++.-|+.+++....=.+. .... ..+.++|+.
T Consensus 162 ~~~i~V~~~g~pv~~LNELE~i--~G~IyA--NVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIA 237 (264)
T PF05096_consen 162 VRTIQVTDNGRPVSNLNELEYI--NGKIYA--NVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIA 237 (264)
T ss_dssp EEEEE-EETTEE---EEEEEEE--TTEEEE--EETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEE
T ss_pred EEEEEEEECCEECCCcEeEEEE--cCEEEE--EeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEe
Confidence 3333210000000111223333 667752 2234567888888888765422221 0011 146788999
Q ss_pred eccc
Q 038464 396 FEPR 399 (404)
Q Consensus 396 ~~p~ 399 (404)
|.|.
T Consensus 238 yd~~ 241 (264)
T PF05096_consen 238 YDPE 241 (264)
T ss_dssp EETT
T ss_pred EeCC
Confidence 8775
No 86
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=53.93 E-value=1.9e+02 Score=26.98 Aligned_cols=72 Identities=19% Similarity=0.335 Sum_probs=39.6
Q ss_pred eEEEEecc-CCeEEEEec--CCCceeeccccCCccccccceeE-eeCCeEEEEEeeeccceeeEEEEEEeCCCCCeEEec
Q 038464 252 EIVYFLNS-CGTIVACNL--TQKSFTEYPRLLPVFSEYSIDVV-ECRGELLVVVLSEFLESASLRVWRFDQDNGFWHQIA 327 (404)
Q Consensus 252 ~~~y~~~~-~~~i~~fD~--~~~~w~~i~~~~p~~~~~~~~lv-~~~g~L~~v~~~~~~~~~~~~vw~l~~~~~~W~~v~ 327 (404)
.++|+.++ .+.|..|++ +++..+.+.. .+..+..-..+. .-+|+..++.... ...+.+|..|.+++.+..+.
T Consensus 257 ~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~-~~~~G~~Pr~~~~s~~g~~l~Va~~~---s~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 257 RFLYVSNRGSNSISVFDLDPATGTLTLVQT-VPTGGKFPRHFAFSPDGRYLYVANQD---SNTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp SEEEEEECTTTEEEEEEECTTTTTEEEEEE-EEESSSSEEEEEE-TTSSEEEEEETT---TTEEEEEEEETTTTEEEEEE
T ss_pred CEEEEEeccCCEEEEEEEecCCCceEEEEE-EeCCCCCccEEEEeCCCCEEEEEecC---CCeEEEEEEeCCCCcEEEec
Confidence 34555443 357888887 3445554422 222121111222 2366655555433 56788999999888888775
No 87
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=53.81 E-value=1.6e+02 Score=26.16 Aligned_cols=122 Identities=20% Similarity=0.257 Sum_probs=63.5
Q ss_pred CeEEEEecCCCcee-eccccCCcccc-----------ccceeEeeCCeEEEEEeeeccceeeEEEEEEeCCC----CCeE
Q 038464 261 GTIVACNLTQKSFT-EYPRLLPVFSE-----------YSIDVVECRGELLVVVLSEFLESASLRVWRFDQDN----GFWH 324 (404)
Q Consensus 261 ~~i~~fD~~~~~w~-~i~~~~p~~~~-----------~~~~lv~~~g~L~~v~~~~~~~~~~~~vw~l~~~~----~~W~ 324 (404)
+.|+.||+.++.-. .. .+|.... -.+.++.-+.-|.+|-.... ....+.|=++|+.+ ..|.
T Consensus 89 ~~IvkydL~t~~v~~~~--~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~-~~g~ivvskld~~tL~v~~tw~ 165 (250)
T PF02191_consen 89 RNIVKYDLTTRSVVARR--ELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATED-NNGNIVVSKLDPETLSVEQTWN 165 (250)
T ss_pred ceEEEEECcCCcEEEEE--ECCccccccccceecCCCceEEEEEcCCCEEEEEecCC-CCCcEEEEeeCcccCceEEEEE
Confidence 37999999988755 22 1232110 12456677777887765432 12346677777632 3565
Q ss_pred EeccCChhHHHHhccCcceEEEEecCCEEEEEEecCC---CceEEEEECCCCceEECCCCCCCCceeEeeEeeeeccc
Q 038464 325 QIAAMPPAMSHEFYGKKVDINCVAAGHQIFICFNSAE---LFSYVLCDLVTNEWVELPKCSMNGEAVVFMSAFSFEPR 399 (404)
Q Consensus 325 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~~---~~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~~p~ 399 (404)
. .++.... + .++..-+.+|+. .+.. ..-.++||+.+++-+. ..++ +.+.....+.+.|.|+
T Consensus 166 T--~~~k~~~----~-----naFmvCGvLY~~-~s~~~~~~~I~yafDt~t~~~~~-~~i~-f~~~~~~~~~l~YNP~ 229 (250)
T PF02191_consen 166 T--SYPKRSA----G-----NAFMVCGVLYAT-DSYDTRDTEIFYAFDTYTGKEED-VSIP-FPNPYGNISMLSYNPR 229 (250)
T ss_pred e--ccCchhh----c-----ceeeEeeEEEEE-EECCCCCcEEEEEEECCCCceec-eeee-eccccCceEeeeECCC
Confidence 3 2332211 0 122223445533 2211 2344789999877653 2333 2333445667788775
No 88
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=53.13 E-value=12 Score=27.60 Aligned_cols=26 Identities=15% Similarity=0.240 Sum_probs=23.3
Q ss_pred CCcccChHHHHHHHHhcCChhhhhHh
Q 038464 20 FSMEELNQDLLERVLSWLPTSTFFRL 45 (404)
Q Consensus 20 ~~~~~LP~dll~~Il~rLp~~~l~r~ 45 (404)
..|..||.|+-..||+.|+-.+|..+
T Consensus 70 ~~w~~LP~EIk~~Il~~L~~~dL~~l 95 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLSNKDLKKL 95 (97)
T ss_pred CchhhCCHHHHHHHHHcCCHHHHHHH
Confidence 67999999999999999999888653
No 89
>PRK04043 tolB translocation protein TolB; Provisional
Probab=53.11 E-value=2.2e+02 Score=27.52 Aligned_cols=103 Identities=16% Similarity=0.170 Sum_probs=56.4
Q ss_pred CeEEEEecCCCceeeccccCCccccccceeEeeCC-eEEEEEeeeccceeeEEEEEEeCCCCCeEEeccCChhHHHHhcc
Q 038464 261 GTIVACNLTQKSFTEYPRLLPVFSEYSIDVVECRG-ELLVVVLSEFLESASLRVWRFDQDNGFWHQIAAMPPAMSHEFYG 339 (404)
Q Consensus 261 ~~i~~fD~~~~~w~~i~~~~p~~~~~~~~lv~~~g-~L~~v~~~~~~~~~~~~vw~l~~~~~~W~~v~~~~~~~~~~~~~ 339 (404)
..|..+|+.+++=+.+.. .+... ...-..-+| +|.+.... ...-+||.++..+..++++..-+..
T Consensus 213 ~~Iyv~dl~tg~~~~lt~-~~g~~--~~~~~SPDG~~la~~~~~----~g~~~Iy~~dl~~g~~~~LT~~~~~------- 278 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIAS-SQGML--VVSDVSKDGSKLLLTMAP----KGQPDIYLYDTNTKTLTQITNYPGI------- 278 (419)
T ss_pred CEEEEEECCCCcEEEEec-CCCcE--EeeEECCCCCEEEEEEcc----CCCcEEEEEECCCCcEEEcccCCCc-------
Confidence 468888988876555521 11110 111122355 55544322 2245799999877788888765521
Q ss_pred CcceEEEEecCCEEEEEEecCCCceEEEEECCCCceEEC
Q 038464 340 KKVDINCVAAGHQIFICFNSAELFSYVLCDLVTNEWVEL 378 (404)
Q Consensus 340 ~~~~~~~~~~~~~i~v~~~~~~~~~~~~yd~~~~~w~~~ 378 (404)
.......-.|..|++.-...+...++++|+++++.+++
T Consensus 279 -d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rl 316 (419)
T PRK04043 279 -DVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQV 316 (419)
T ss_pred -cCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeC
Confidence 11112223466776543223345788889988877655
No 90
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=52.03 E-value=2e+02 Score=26.80 Aligned_cols=120 Identities=15% Similarity=0.224 Sum_probs=60.1
Q ss_pred ceEEEEeccCCeEEEEecCCCc------eeeccccCCccccc---cceeEee---CCeEEEEEeeecc---ceeeEEEEE
Q 038464 251 EEIVYFLNSCGTIVACNLTQKS------FTEYPRLLPVFSEY---SIDVVEC---RGELLVVVLSEFL---ESASLRVWR 315 (404)
Q Consensus 251 ~~~~y~~~~~~~i~~fD~~~~~------w~~i~~~~p~~~~~---~~~lv~~---~g~L~~v~~~~~~---~~~~~~vw~ 315 (404)
...+||+...+.+...|+..+. |..+... .....+ .-+++.+ .|+||++-..... +.-.-+||+
T Consensus 195 ~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~-e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv 273 (342)
T PF06433_consen 195 GGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDA-EKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWV 273 (342)
T ss_dssp TTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HH-HHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEE
T ss_pred CCeEEEEecCCEEEEEeccCCcccccCcccccCcc-ccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEE
Confidence 3467888888889998887765 3322100 000011 1244443 6799987643211 234567999
Q ss_pred EeCCCCCeEEeccCChhHHHHhccCcceEEEEecCCEEEEEEecCCCceEEEEECCCCce-EECCC
Q 038464 316 FDQDNGFWHQIAAMPPAMSHEFYGKKVDINCVAAGHQIFICFNSAELFSYVLCDLVTNEW-VELPK 380 (404)
Q Consensus 316 l~~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~yd~~~~~w-~~~~~ 380 (404)
+|..+. .++.+++.+ ..-..+.+...+.-.+ +.-+...+.+.+||..+++- +.++.
T Consensus 274 ~D~~t~--krv~Ri~l~------~~~~Si~Vsqd~~P~L-~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 274 YDLKTH--KRVARIPLE------HPIDSIAVSQDDKPLL-YALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EETTTT--EEEEEEEEE------EEESEEEEESSSS-EE-EEEETTTTEEEEEETTT--EEEEE--
T ss_pred EECCCC--eEEEEEeCC------CccceEEEccCCCcEE-EEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 999754 455555521 0001223323333232 22223457899999999764 34443
No 91
>PF13859 BNR_3: BNR repeat-like domain; PDB: 3B69_A.
Probab=50.54 E-value=64 Score=29.76 Aligned_cols=66 Identities=15% Similarity=0.228 Sum_probs=38.8
Q ss_pred eEEEEecC-CCceeeccccCCccccccceeEee-CCeEEEEEeeeccceeeEEEEEEeCCCCCeEE-eccCCh
Q 038464 262 TIVACNLT-QKSFTEYPRLLPVFSEYSIDVVEC-RGELLVVVLSEFLESASLRVWRFDQDNGFWHQ-IAAMPP 331 (404)
Q Consensus 262 ~i~~fD~~-~~~w~~i~~~~p~~~~~~~~lv~~-~g~L~~v~~~~~~~~~~~~vw~l~~~~~~W~~-v~~~~~ 331 (404)
.++-|... ...|..-.. ++..+=..+.+++. +|+|.|+..+++. .-+||+-.+...+|++ +..++.
T Consensus 150 SlIiYS~d~g~~W~lskg-~s~~gC~~psv~EWe~gkLlM~~~c~~g---~rrVYeS~DmG~tWtea~gtlsr 218 (310)
T PF13859_consen 150 SLIIYSTDDGKTWKLSKG-MSPAGCSDPSVVEWEDGKLLMMTACDDG---RRRVYESGDMGTTWTEALGTLSR 218 (310)
T ss_dssp EEEEEESSTTSS-EE-S-----TT-EEEEEEEE-TTEEEEEEE-TTS------EEEESSTTSS-EE-TTTTTT
T ss_pred EEEEEECCCccceEeccc-cCCCCcceEEEEeccCCeeEEEEecccc---eEEEEEEcccceehhhccCccce
Confidence 34556555 677986432 33322124789999 8999999987632 3458888887779998 668874
No 92
>PRK00178 tolB translocation protein TolB; Provisional
Probab=50.51 E-value=2.4e+02 Score=27.15 Aligned_cols=162 Identities=14% Similarity=0.124 Sum_probs=0.0
Q ss_pred CCCceEEEEEecccCceEEEEEeCCCCceeecccccccccccccccccCCccccCCe--EEEeecCCceeeecccCCCcc
Q 038464 162 NPSNYKLVLVYGELPKLSFKVYNSCLNCWEEETLLLSRKSEQALEVDSIDHHDDEDA--VYFLSKAGNVVATNMQRSPSK 239 (404)
Q Consensus 162 ~~~~~kv~~~~g~~~~~~~~vy~~~~~~W~~~~~~~p~~~~~~~~~~~~~~v~~~G~--ly~~~~~~~~~~~~~~~~~~~ 239 (404)
+++.-+|+.+........+.+++..++.-+.+.. .+..... -...-||. +|.....++.
T Consensus 207 SpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~-~~g~~~~-------~~~SpDG~~la~~~~~~g~~----------- 267 (430)
T PRK00178 207 SPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITN-FEGLNGA-------PAWSPDGSKLAFVLSKDGNP----------- 267 (430)
T ss_pred CCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccC-CCCCcCC-------eEECCCCCEEEEEEccCCCc-----------
Q ss_pred cccceeeecCCceEEEEeccCCeEEEEecCCCceeeccccCCccccccceeEeeCCeEEEEEeeeccceeeEEEEEEeCC
Q 038464 240 QYSSVITSKDGEEIVYFLNSCGTIVACNLTQKSFTEYPRLLPVFSEYSIDVVECRGELLVVVLSEFLESASLRVWRFDQD 319 (404)
Q Consensus 240 ~~~~~~~~~~~~~~~y~~~~~~~i~~fD~~~~~w~~i~~~~p~~~~~~~~lv~~~g~L~~v~~~~~~~~~~~~vw~l~~~ 319 (404)
.|..+|+++.....+ ..........-..-+|+-.++.... .....||.++..
T Consensus 268 ----------------------~Iy~~d~~~~~~~~l---t~~~~~~~~~~~spDg~~i~f~s~~---~g~~~iy~~d~~ 319 (430)
T PRK00178 268 ----------------------EIYVMDLASRQLSRV---TNHPAIDTEPFWGKDGRTLYFTSDR---GGKPQIYKVNVN 319 (430)
T ss_pred ----------------------eEEEEECCCCCeEEc---ccCCCCcCCeEECCCCCEEEEEECC---CCCceEEEEECC
Q ss_pred CCCeEEeccCChhHHHHhccCcceEEEEecCCEEEEEEecCCCceEEEEECCCCceEEC
Q 038464 320 NGFWHQIAAMPPAMSHEFYGKKVDINCVAAGHQIFICFNSAELFSYVLCDLVTNEWVEL 378 (404)
Q Consensus 320 ~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~yd~~~~~w~~~ 378 (404)
++++.++.... ...........++.|++.........+.++|+.+++.+.+
T Consensus 320 ~g~~~~lt~~~--------~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~l 370 (430)
T PRK00178 320 GGRAERVTFVG--------NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRIL 370 (430)
T ss_pred CCCEEEeecCC--------CCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEc
No 93
>PF03478 DUF295: Protein of unknown function (DUF295); InterPro: IPR005174 This family of proteins are found in plants. The function of the proteins is unknown.
Probab=50.24 E-value=19 Score=23.28 Aligned_cols=46 Identities=11% Similarity=0.289 Sum_probs=23.4
Q ss_pred eEEeccCChhHHHHhccCcceEEEE------ecCCEEEEEEe--cCCCceEEEEEC
Q 038464 323 WHQIAAMPPAMSHEFYGKKVDINCV------AAGHQIFICFN--SAELFSYVLCDL 370 (404)
Q Consensus 323 W~~v~~~~~~~~~~~~~~~~~~~~~------~~~~~i~v~~~--~~~~~~~~~yd~ 370 (404)
|+++.+|..... |.+....+.+. ..+|.||+.-. ......+.+|||
T Consensus 1 W~~v~~lGd~al--Flg~~~~~~~~a~~~~g~~~n~IYf~~~~~~~~~~~~~Vy~m 54 (54)
T PF03478_consen 1 WVEVKSLGDRAL--FLGRNCSFSVSASDFPGLKGNCIYFLDDSSDESDRDIGVYNM 54 (54)
T ss_pred CcCccccCCEEE--EEeCCccEEEECCCCCCccCCEEEEecCCCCCCCCCEEEEeC
Confidence 777777865421 12222122221 13688986433 123467778875
No 94
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=48.31 E-value=2.3e+02 Score=26.36 Aligned_cols=75 Identities=17% Similarity=0.249 Sum_probs=41.5
Q ss_pred CceEEEEe-CCCeEEEEcCCCCCeeeCCCCCCCCCCCceeEEEEEecCCCCCceEEEEEecc-cCceEEEEEeCCCCcee
Q 038464 114 GGLVCFRT-ASGKFIVSNPVTGSSRELPPLDADTENQSLHAIVMTTSSKNPSNYKLVLVYGE-LPKLSFKVYNSCLNCWE 191 (404)
Q Consensus 114 ~Glv~~~~-~~~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~g~~~~~~~~kv~~~~g~-~~~~~~~vy~~~~~~W~ 191 (404)
+..|+... +..++++|+..-+.-...-+....++..++| +++. .++|+.-+..+ +....+.-|+...++-+
T Consensus 156 ~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRH-i~FH------pn~k~aY~v~EL~stV~v~~y~~~~g~~~ 228 (346)
T COG2706 156 GRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRH-IVFH------PNGKYAYLVNELNSTVDVLEYNPAVGKFE 228 (346)
T ss_pred CCEEEEeecCCceEEEEEcccCccccccccccCCCCCcce-EEEc------CCCcEEEEEeccCCEEEEEEEcCCCceEE
Confidence 33555543 3667888888766655444444333444444 3333 24555433333 34556777777778887
Q ss_pred eccc
Q 038464 192 EETL 195 (404)
Q Consensus 192 ~~~~ 195 (404)
.++.
T Consensus 229 ~lQ~ 232 (346)
T COG2706 229 ELQT 232 (346)
T ss_pred Eeee
Confidence 7775
No 95
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=47.99 E-value=2.5e+02 Score=26.69 Aligned_cols=104 Identities=15% Similarity=0.121 Sum_probs=51.1
Q ss_pred eEEEEecCCCceeeccccCCccccccceeEeeCCe-EEEEEeeeccceeeEEEEEEeCCCCCeEEeccCChhHHHHhccC
Q 038464 262 TIVACNLTQKSFTEYPRLLPVFSEYSIDVVECRGE-LLVVVLSEFLESASLRVWRFDQDNGFWHQIAAMPPAMSHEFYGK 340 (404)
Q Consensus 262 ~i~~fD~~~~~w~~i~~~~p~~~~~~~~lv~~~g~-L~~v~~~~~~~~~~~~vw~l~~~~~~W~~v~~~~~~~~~~~~~~ 340 (404)
.|..+|+.++....+... +. ...... ..-+|+ |++.... .....||.++..+..+.++..-.. .
T Consensus 259 ~i~~~d~~~~~~~~l~~~-~~-~~~~~~-~s~dg~~l~~~s~~----~g~~~iy~~d~~~~~~~~l~~~~~--------~ 323 (417)
T TIGR02800 259 DIYVMDLDGKQLTRLTNG-PG-IDTEPS-WSPDGKSIAFTSDR----GGSPQIYMMDADGGEVRRLTFRGG--------Y 323 (417)
T ss_pred cEEEEECCCCCEEECCCC-CC-CCCCEE-ECCCCCEEEEEECC----CCCceEEEEECCCCCEEEeecCCC--------C
Confidence 477788887766655221 11 101111 122554 4443321 123368888876666666542211 1
Q ss_pred cceEEEEecCCEEEEEEecCCCceEEEEECCCCceEECCC
Q 038464 341 KVDINCVAAGHQIFICFNSAELFSYVLCDLVTNEWVELPK 380 (404)
Q Consensus 341 ~~~~~~~~~~~~i~v~~~~~~~~~~~~yd~~~~~w~~~~~ 380 (404)
...+.....++.|++.........+++||+.++.++.+..
T Consensus 324 ~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~ 363 (417)
T TIGR02800 324 NASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTD 363 (417)
T ss_pred ccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccC
Confidence 1112222345555443222223578999999887776653
No 96
>PRK03629 tolB translocation protein TolB; Provisional
Probab=47.94 E-value=2.7e+02 Score=26.97 Aligned_cols=103 Identities=11% Similarity=0.058 Sum_probs=50.5
Q ss_pred eEEEEecCCCceeeccccCCccccccceeEeeCCe-EEEEEeeeccceeeEEEEEEeCCCCCeEEeccCChhHHHHhccC
Q 038464 262 TIVACNLTQKSFTEYPRLLPVFSEYSIDVVECRGE-LLVVVLSEFLESASLRVWRFDQDNGFWHQIAAMPPAMSHEFYGK 340 (404)
Q Consensus 262 ~i~~fD~~~~~w~~i~~~~p~~~~~~~~lv~~~g~-L~~v~~~~~~~~~~~~vw~l~~~~~~W~~v~~~~~~~~~~~~~~ 340 (404)
.|..+|+++.....+... +. . .......-+|+ |+.+... ....+||.++..+..-.++..-.. .
T Consensus 268 ~I~~~d~~tg~~~~lt~~-~~-~-~~~~~wSPDG~~I~f~s~~----~g~~~Iy~~d~~~g~~~~lt~~~~--------~ 332 (429)
T PRK03629 268 NLYVMDLASGQIRQVTDG-RS-N-NTEPTWFPDSQNLAYTSDQ----AGRPQVYKVNINGGAPQRITWEGS--------Q 332 (429)
T ss_pred EEEEEECCCCCEEEccCC-CC-C-cCceEECCCCCEEEEEeCC----CCCceEEEEECCCCCeEEeecCCC--------C
Confidence 477788887766655211 11 1 11111222554 4443321 124579988876555555432210 0
Q ss_pred cceEEEEecCCEEEEEEecCCCceEEEEECCCCceEECC
Q 038464 341 KVDINCVAAGHQIFICFNSAELFSYVLCDLVTNEWVELP 379 (404)
Q Consensus 341 ~~~~~~~~~~~~i~v~~~~~~~~~~~~yd~~~~~w~~~~ 379 (404)
...+.....|+.|++.........+.++|+++++++.+.
T Consensus 333 ~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt 371 (429)
T PRK03629 333 NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLT 371 (429)
T ss_pred ccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeC
Confidence 011222234556644322233456888999988887654
No 97
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=46.94 E-value=11 Score=34.69 Aligned_cols=39 Identities=21% Similarity=0.423 Sum_probs=33.4
Q ss_pred CCcccChHHHHHHHHhcCCh--------hhhhHhhhcchhhhhccCC
Q 038464 20 FSMEELNQDLLERVLSWLPT--------STFFRLSSVCKRWKSVADS 58 (404)
Q Consensus 20 ~~~~~LP~dll~~Il~rLp~--------~~l~r~~~Vck~W~~li~~ 58 (404)
..|..||.++|.+|+-|..- ++.+.+..||+.|+....+
T Consensus 43 ~~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~ 89 (355)
T KOG2502|consen 43 SLWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKE 89 (355)
T ss_pred chhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccc
Confidence 57999999999999998852 4778899999999987654
No 98
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=46.57 E-value=37 Score=18.74 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=18.4
Q ss_pred EecCceEEEEeCCCeEEEEcCCCCCe
Q 038464 111 AASGGLVCFRTASGKFIVSNPVTGSS 136 (404)
Q Consensus 111 ~s~~Glv~~~~~~~~~~v~NP~t~~w 136 (404)
...+|.+++......++.+|+.+++-
T Consensus 3 ~~~~~~v~~~~~~g~l~a~d~~~G~~ 28 (33)
T smart00564 3 VLSDGTVYVGSTDGTLYALDAKTGEI 28 (33)
T ss_pred EEECCEEEEEcCCCEEEEEEcccCcE
Confidence 34566777765567888889888763
No 99
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=45.70 E-value=2.3e+02 Score=25.67 Aligned_cols=105 Identities=12% Similarity=0.199 Sum_probs=56.2
Q ss_pred CeEEEEecCCCceeeccccCCccccccceeEe-eCCeEEEEEeeeccc--eeeEEEEEEeCCCCCeEEecc-----CChh
Q 038464 261 GTIVACNLTQKSFTEYPRLLPVFSEYSIDVVE-CRGELLVVVLSEFLE--SASLRVWRFDQDNGFWHQIAA-----MPPA 332 (404)
Q Consensus 261 ~~i~~fD~~~~~w~~i~~~~p~~~~~~~~lv~-~~g~L~~v~~~~~~~--~~~~~vw~l~~~~~~W~~v~~-----~~~~ 332 (404)
..+..||.++.+|......+- +.. ..|.- .+.+|++.|.-.... ...+-.| +..+.+|+.+.. +|.+
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~--G~V-~~l~~~~~~~Llv~G~ft~~~~~~~~la~y--d~~~~~w~~~~~~~s~~ipgp 90 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGIS--GTV-TDLQWASNNQLLVGGNFTLNGTNSSNLATY--DFKNQTWSSLGGGSSNSIPGP 90 (281)
T ss_pred CEEEEEECCCCEeecCCCCce--EEE-EEEEEecCCEEEEEEeeEECCCCceeEEEE--ecCCCeeeecCCcccccCCCc
Confidence 378899999999997743321 111 23333 367888777543222 3444455 555558988765 3322
Q ss_pred HHHHhccCcceEEEE-ecCCEEEEEEec-CCCceEEEEECCCCceEECCC
Q 038464 333 MSHEFYGKKVDINCV-AAGHQIFICFNS-AELFSYVLCDLVTNEWVELPK 380 (404)
Q Consensus 333 ~~~~~~~~~~~~~~~-~~~~~i~v~~~~-~~~~~~~~yd~~~~~w~~~~~ 380 (404)
+ ..+... ..++.+++.... .....+..| +..+|..+..
T Consensus 91 v--------~a~~~~~~d~~~~~~aG~~~~g~~~l~~~--dGs~W~~i~~ 130 (281)
T PF12768_consen 91 V--------TALTFISNDGSNFWVAGRSANGSTFLMKY--DGSSWSSIGS 130 (281)
T ss_pred E--------EEEEeeccCCceEEEeceecCCCceEEEE--cCCceEeccc
Confidence 1 111111 234556544332 122334444 5678888876
No 100
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=44.05 E-value=23 Score=31.40 Aligned_cols=40 Identities=10% Similarity=0.231 Sum_probs=31.3
Q ss_pred CCCcccChHHHHHHHHhcCCh-hhhhHhhhcchhhhhccCC
Q 038464 19 SFSMEELNQDLLERVLSWLPT-STFFRLSSVCKRWKSVADS 58 (404)
Q Consensus 19 ~~~~~~LP~dll~~Il~rLp~-~~l~r~~~Vck~W~~li~~ 58 (404)
...+.+||.+++.+||.|||- .+|..+..|-..-..++++
T Consensus 199 ~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e 239 (332)
T KOG3926|consen 199 GLTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEE 239 (332)
T ss_pred CCCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHH
Confidence 455789999999999999996 8888888776655555543
No 101
>PRK05137 tolB translocation protein TolB; Provisional
Probab=43.47 E-value=3.1e+02 Score=26.48 Aligned_cols=63 Identities=11% Similarity=-0.003 Sum_probs=34.8
Q ss_pred CCeEEEEcCCCCCeeeCCCCCCCCCCCceeEEEEEecCCCCCceEEEEEecccCceEEEEEeCCCCceeeccc
Q 038464 123 SGKFIVSNPVTGSSRELPPLDADTENQSLHAIVMTTSSKNPSNYKLVLVYGELPKLSFKVYNSCLNCWEEETL 195 (404)
Q Consensus 123 ~~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~g~~~~~~~~kv~~~~g~~~~~~~~vy~~~~~~W~~~~~ 195 (404)
...++++|+.+++.+.+...+ ... .+. .+ +++.-+|+..........+.++|.+++.-+.+..
T Consensus 225 ~~~i~~~dl~~g~~~~l~~~~---g~~--~~~-~~----SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~ 287 (435)
T PRK05137 225 RPRVYLLDLETGQRELVGNFP---GMT--FAP-RF----SPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTD 287 (435)
T ss_pred CCEEEEEECCCCcEEEeecCC---Ccc--cCc-EE----CCCCCEEEEEEecCCCceEEEEECCCCceEEccC
Confidence 468999999999888776543 110 111 11 1223344433222223567777888776655543
No 102
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=43.40 E-value=3.3e+02 Score=26.68 Aligned_cols=54 Identities=20% Similarity=0.244 Sum_probs=29.9
Q ss_pred eEEEEecCCCceeeccccCCcccccccee-EeeCCeEEEEEeeeccceeeEEEEEEeCCCCCeEE
Q 038464 262 TIVACNLTQKSFTEYPRLLPVFSEYSIDV-VECRGELLVVVLSEFLESASLRVWRFDQDNGFWHQ 325 (404)
Q Consensus 262 ~i~~fD~~~~~w~~i~~~~p~~~~~~~~l-v~~~g~L~~v~~~~~~~~~~~~vw~l~~~~~~W~~ 325 (404)
.+..||..+..-..+..++ +.. ..+ +.-+|+-.+++. ..+++|+.|-+++.=+.
T Consensus 383 ~l~iyd~~~~e~kr~e~~l---g~I-~av~vs~dGK~~vvaN------dr~el~vididngnv~~ 437 (668)
T COG4946 383 KLGIYDKDGGEVKRIEKDL---GNI-EAVKVSPDGKKVVVAN------DRFELWVIDIDNGNVRL 437 (668)
T ss_pred eEEEEecCCceEEEeeCCc---cce-EEEEEcCCCcEEEEEc------CceEEEEEEecCCCeeE
Confidence 6888888887766553222 111 111 223667555442 46778888876544333
No 103
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=42.59 E-value=3.1e+02 Score=26.18 Aligned_cols=102 Identities=24% Similarity=0.248 Sum_probs=54.0
Q ss_pred CeEEEEecCCCc---eeeccccCCcccccc-ceeEeeCCeEEEEEeeeccceeeEEEEEEeCCCCCeEEe-ccCChhHHH
Q 038464 261 GTIVACNLTQKS---FTEYPRLLPVFSEYS-IDVVECRGELLVVVLSEFLESASLRVWRFDQDNGFWHQI-AAMPPAMSH 335 (404)
Q Consensus 261 ~~i~~fD~~~~~---w~~i~~~~p~~~~~~-~~lv~~~g~L~~v~~~~~~~~~~~~vw~l~~~~~~W~~v-~~~~~~~~~ 335 (404)
..|+++|+.... |..+- .+...... ..+...++.|++.... .....+.|+.++ ..|... ..+|..
T Consensus 301 ~~l~~~~l~~~~~~~~~~~l--~~~~~~~~l~~~~~~~~~Lvl~~~~--~~~~~l~v~~~~---~~~~~~~~~~p~~--- 370 (414)
T PF02897_consen 301 GRLVAVDLADPSPAEWWTVL--IPEDEDVSLEDVSLFKDYLVLSYRE--NGSSRLRVYDLD---DGKESREIPLPEA--- 370 (414)
T ss_dssp -EEEEEETTSTSGGGEEEEE--E--SSSEEEEEEEEETTEEEEEEEE--TTEEEEEEEETT----TEEEEEEESSSS---
T ss_pred cEEEEecccccccccceeEE--cCCCCceeEEEEEEECCEEEEEEEE--CCccEEEEEECC---CCcEEeeecCCcc---
Confidence 378889988765 56321 12211111 2344568888876543 234556666544 133333 344421
Q ss_pred HhccCcceEEEEe---cCCEEEEEEecC-CCceEEEEECCCCceEEC
Q 038464 336 EFYGKKVDINCVA---AGHQIFICFNSA-ELFSYVLCDLVTNEWVEL 378 (404)
Q Consensus 336 ~~~~~~~~~~~~~---~~~~i~v~~~~~-~~~~~~~yd~~~~~w~~~ 378 (404)
..+.... .++.++|.+.+. .+..++.||+.+++.+.+
T Consensus 371 ------g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~ 411 (414)
T PF02897_consen 371 ------GSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLL 411 (414)
T ss_dssp ------SEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEE
T ss_pred ------eEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEE
Confidence 1112222 357777665553 357899999999988765
No 104
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=42.18 E-value=2.3e+02 Score=24.63 Aligned_cols=65 Identities=18% Similarity=0.266 Sum_probs=37.8
Q ss_pred EEEEcCCCCceeeeecCCCceeeccCCCCCCCeeEEEecCceEEEEeCCCeEEEEcCCCCCeeeCCCC
Q 038464 75 FLMVDHQLNHSIVFDSAEKTWKELNFPNSSPDSIPVAASGGLVCFRTASGKFIVSNPVTGSSRELPPL 142 (404)
Q Consensus 75 ~~~~~~~~~~~~~~d~~~~~w~~l~~p~~~~~~~~~~s~~Glv~~~~~~~~~~v~NP~t~~w~~lP~~ 142 (404)
+++........+.+++..++...+..+. +. ...+...+|.+++... ....++|+.++++..+...
T Consensus 14 l~~~D~~~~~i~~~~~~~~~~~~~~~~~-~~-G~~~~~~~g~l~v~~~-~~~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 14 LYWVDIPGGRIYRVDPDTGEVEVIDLPG-PN-GMAFDRPDGRLYVADS-GGIAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEESSS-EE-EEEEECTTSEEEEEET-TCEEEEETTTTEEEEEEEE
T ss_pred EEEEEcCCCEEEEEECCCCeEEEEecCC-Cc-eEEEEccCCEEEEEEc-CceEEEecCCCcEEEEeec
Confidence 3333433445567788776555444443 11 1223335677777764 4456669999988876655
No 105
>PRK13684 Ycf48-like protein; Provisional
Probab=42.15 E-value=2.9e+02 Score=25.71 Aligned_cols=28 Identities=11% Similarity=0.107 Sum_probs=17.1
Q ss_pred CCeEEEEEeeeccceeeEEEEEEeCCCCCeEEecc
Q 038464 294 RGELLVVVLSEFLESASLRVWRFDQDNGFWHQIAA 328 (404)
Q Consensus 294 ~g~L~~v~~~~~~~~~~~~vw~l~~~~~~W~~v~~ 328 (404)
++.+++++... . |+.-.+...+|+.+..
T Consensus 270 ~~~~~~~G~~G----~---v~~S~d~G~tW~~~~~ 297 (334)
T PRK13684 270 PGEIWAGGGNG----T---LLVSKDGGKTWEKDPV 297 (334)
T ss_pred CCCEEEEcCCC----e---EEEeCCCCCCCeECCc
Confidence 67888776432 1 3444455668999753
No 106
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=41.55 E-value=3.6e+02 Score=26.64 Aligned_cols=65 Identities=12% Similarity=0.098 Sum_probs=38.7
Q ss_pred CccccCCeEEEeecCCceeeecccCCC--ccc-------------ccceeeecCCceEEEEeccCCeEEEEecCCCc--e
Q 038464 211 DHHDDEDAVYFLSKAGNVVATNMQRSP--SKQ-------------YSSVITSKDGEEIVYFLNSCGTIVACNLTQKS--F 273 (404)
Q Consensus 211 ~~v~~~G~ly~~~~~~~~~~~~~~~~~--~~~-------------~~~~~~~~~~~~~~y~~~~~~~i~~fD~~~~~--w 273 (404)
.+++.+|.+|+....+.+.++|...+. |.. ....+... +...+|+....+.+.++|.++.+ |
T Consensus 56 sPvv~~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W 134 (488)
T cd00216 56 TPLVVDGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVW 134 (488)
T ss_pred CCEEECCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEee
Confidence 356778888887766777777754211 110 00000111 12578887777899999998644 8
Q ss_pred eec
Q 038464 274 TEY 276 (404)
Q Consensus 274 ~~i 276 (404)
+.-
T Consensus 135 ~~~ 137 (488)
T cd00216 135 KFG 137 (488)
T ss_pred eec
Confidence 753
No 107
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=41.54 E-value=3.1e+02 Score=27.54 Aligned_cols=87 Identities=10% Similarity=0.104 Sum_probs=45.4
Q ss_pred ccccCCeEEEeecCCceeeecccCCCcc-cccc-----------------eeeecCCceEEEEeccCCeEEEEecCCCc-
Q 038464 212 HHDDEDAVYFLSKAGNVVATNMQRSPSK-QYSS-----------------VITSKDGEEIVYFLNSCGTIVACNLTQKS- 272 (404)
Q Consensus 212 ~v~~~G~ly~~~~~~~~~~~~~~~~~~~-~~~~-----------------~~~~~~~~~~~y~~~~~~~i~~fD~~~~~- 272 (404)
++..+|.+|+.+..+.+.++|...++.. .+.. .+... +..+|+......++++|.++.+
T Consensus 65 Pvv~~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~--~~~v~v~t~dg~l~ALDa~TGk~ 142 (527)
T TIGR03075 65 PLVVDGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY--DGKVFFGTLDARLVALDAKTGKV 142 (527)
T ss_pred CEEECCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE--CCEEEEEcCCCEEEEEECCCCCE
Confidence 4667888877666666677765432111 1110 00111 3467877777899999998655
Q ss_pred -eeeccccCCccccccceeEeeCCeEEEE
Q 038464 273 -FTEYPRLLPVFSEYSIDVVECRGELLVV 300 (404)
Q Consensus 273 -w~~i~~~~p~~~~~~~~lv~~~g~L~~v 300 (404)
|+.-.............-+..+|++++-
T Consensus 143 ~W~~~~~~~~~~~~~tssP~v~~g~Vivg 171 (527)
T TIGR03075 143 VWSKKNGDYKAGYTITAAPLVVKGKVITG 171 (527)
T ss_pred EeecccccccccccccCCcEEECCEEEEe
Confidence 7643111111111112234457776654
No 108
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=40.34 E-value=4.7e+02 Score=27.67 Aligned_cols=22 Identities=18% Similarity=0.309 Sum_probs=15.6
Q ss_pred CccccCCeEEEeecCCceeeec
Q 038464 211 DHHDDEDAVYFLSKAGNVVATN 232 (404)
Q Consensus 211 ~~v~~~G~ly~~~~~~~~~~~~ 232 (404)
.++..+|.+|+-+..+.+.+.|
T Consensus 189 TPlvvgg~lYv~t~~~~V~ALD 210 (764)
T TIGR03074 189 TPLKVGDTLYLCTPHNKVIALD 210 (764)
T ss_pred CCEEECCEEEEECCCCeEEEEE
Confidence 4678899999877665555555
No 109
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=39.49 E-value=3.8e+02 Score=26.28 Aligned_cols=69 Identities=26% Similarity=0.431 Sum_probs=37.1
Q ss_pred CccccCCeEEEeecC---Cceeeeccc-----CCCc-ccc-cceeeecCCceEEEEeccCCeEEEEecCCCceeeccccC
Q 038464 211 DHHDDEDAVYFLSKA---GNVVATNMQ-----RSPS-KQY-SSVITSKDGEEIVYFLNSCGTIVACNLTQKSFTEYPRLL 280 (404)
Q Consensus 211 ~~v~~~G~ly~~~~~---~~~~~~~~~-----~~~~-~~~-~~~~~~~~~~~~~y~~~~~~~i~~fD~~~~~w~~i~~~~ 280 (404)
.++.+.+.+|+++.. |+....|.. +.+. .+| .-.+. .+|... -|. ..+.|.-||++++.-..+...+
T Consensus 230 ~PmIV~~RvYFlsD~eG~GnlYSvdldGkDlrrHTnFtdYY~R~~n-sDGkrI-vFq-~~GdIylydP~td~lekldI~l 306 (668)
T COG4946 230 SPMIVGERVYFLSDHEGVGNLYSVDLDGKDLRRHTNFTDYYPRNAN-SDGKRI-VFQ-NAGDIYLYDPETDSLEKLDIGL 306 (668)
T ss_pred CceEEcceEEEEecccCccceEEeccCCchhhhcCCchhccccccC-CCCcEE-EEe-cCCcEEEeCCCcCcceeeecCC
Confidence 468899999999854 343333322 2110 111 11111 123222 221 1247999999999999886655
Q ss_pred Cc
Q 038464 281 PV 282 (404)
Q Consensus 281 p~ 282 (404)
|.
T Consensus 307 pl 308 (668)
T COG4946 307 PL 308 (668)
T ss_pred cc
Confidence 54
No 110
>PRK04922 tolB translocation protein TolB; Provisional
Probab=39.46 E-value=3.6e+02 Score=26.05 Aligned_cols=103 Identities=13% Similarity=0.139 Sum_probs=51.1
Q ss_pred eEEEEecCCCceeeccccCCccccccceeEeeCCe-EEEEEeeeccceeeEEEEEEeCCCCCeEEeccCChhHHHHhccC
Q 038464 262 TIVACNLTQKSFTEYPRLLPVFSEYSIDVVECRGE-LLVVVLSEFLESASLRVWRFDQDNGFWHQIAAMPPAMSHEFYGK 340 (404)
Q Consensus 262 ~i~~fD~~~~~w~~i~~~~p~~~~~~~~lv~~~g~-L~~v~~~~~~~~~~~~vw~l~~~~~~W~~v~~~~~~~~~~~~~~ 340 (404)
.|..+|+++.....+... .. ...... ..-+|+ |+..... .....||.++..+.+..++..-. ..
T Consensus 273 ~Iy~~d~~~g~~~~lt~~-~~-~~~~~~-~spDG~~l~f~sd~----~g~~~iy~~dl~~g~~~~lt~~g--------~~ 337 (433)
T PRK04922 273 EIYVMDLGSRQLTRLTNH-FG-IDTEPT-WAPDGKSIYFTSDR----GGRPQIYRVAASGGSAERLTFQG--------NY 337 (433)
T ss_pred eEEEEECCCCCeEECccC-CC-CccceE-ECCCCCEEEEEECC----CCCceEEEEECCCCCeEEeecCC--------CC
Confidence 577788887765554211 10 101111 122454 4433321 12356888887666666654211 00
Q ss_pred cceEEEEecCCEEEEEEecCCCceEEEEECCCCceEECC
Q 038464 341 KVDINCVAAGHQIFICFNSAELFSYVLCDLVTNEWVELP 379 (404)
Q Consensus 341 ~~~~~~~~~~~~i~v~~~~~~~~~~~~yd~~~~~w~~~~ 379 (404)
...+...-.|+.|++....+....+.++|+.+++.+.+.
T Consensus 338 ~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt 376 (433)
T PRK04922 338 NARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLT 376 (433)
T ss_pred ccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECC
Confidence 111222234566654322223347889999888877654
No 111
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=39.38 E-value=2.7e+02 Score=27.86 Aligned_cols=78 Identities=14% Similarity=0.098 Sum_probs=43.1
Q ss_pred eeEEEecCceEEEEeCCCeEEEEcCCCCCeee-CCCCC-C--CCCCCceeEEEEEecCCCCCceEEEEEecccCceEEEE
Q 038464 107 SIPVAASGGLVCFRTASGKFIVSNPVTGSSRE-LPPLD-A--DTENQSLHAIVMTTSSKNPSNYKLVLVYGELPKLSFKV 182 (404)
Q Consensus 107 ~~~~~s~~Glv~~~~~~~~~~v~NP~t~~w~~-lP~~~-~--~~~~~~~~~~~~~g~~~~~~~~kv~~~~g~~~~~~~~v 182 (404)
...+..+||||++.+..+.+-.|||.+++... |-... . .+......++..+.+.. +.--+++|. ....+.+
T Consensus 180 ~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d---~gL~~aVGt--s~G~v~i 254 (703)
T KOG2321|consen 180 VVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRD---DGLHVAVGT--STGSVLI 254 (703)
T ss_pred eeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecC---CceeEEeec--cCCcEEE
Confidence 34467789999887667889999999987542 21111 0 00111112233333332 233344442 2356889
Q ss_pred EeCCCCc
Q 038464 183 YNSCLNC 189 (404)
Q Consensus 183 y~~~~~~ 189 (404)
||+.+.+
T Consensus 255 yDLRa~~ 261 (703)
T KOG2321|consen 255 YDLRASK 261 (703)
T ss_pred EEcccCC
Confidence 9998764
No 112
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=38.79 E-value=3.6e+02 Score=25.89 Aligned_cols=27 Identities=15% Similarity=0.094 Sum_probs=18.8
Q ss_pred CCeEEEEEeeeccceeeEEEEEEeCCCCCeEEec
Q 038464 294 RGELLVVVLSEFLESASLRVWRFDQDNGFWHQIA 327 (404)
Q Consensus 294 ~g~L~~v~~~~~~~~~~~~vw~l~~~~~~W~~v~ 327 (404)
++.+++++... -++...+...+|+++.
T Consensus 338 d~~~~a~G~~G-------~v~~s~D~G~tW~~~~ 364 (398)
T PLN00033 338 KKEAWAAGGSG-------ILLRSTDGGKSWKRDK 364 (398)
T ss_pred CCcEEEEECCC-------cEEEeCCCCcceeEcc
Confidence 66888777543 1566667777999975
No 113
>PRK05137 tolB translocation protein TolB; Provisional
Probab=37.77 E-value=3.8e+02 Score=25.86 Aligned_cols=102 Identities=15% Similarity=0.045 Sum_probs=47.7
Q ss_pred eEEEEecCCCceeeccccCCccccccceeEeeCCe-EEEEEeeeccceeeEEEEEEeCCCCCeEEeccCChhHHHHhccC
Q 038464 262 TIVACNLTQKSFTEYPRLLPVFSEYSIDVVECRGE-LLVVVLSEFLESASLRVWRFDQDNGFWHQIAAMPPAMSHEFYGK 340 (404)
Q Consensus 262 ~i~~fD~~~~~w~~i~~~~p~~~~~~~~lv~~~g~-L~~v~~~~~~~~~~~~vw~l~~~~~~W~~v~~~~~~~~~~~~~~ 340 (404)
.|..+|+++..-..+.. .+. ...... ..-+|+ |+..... ....+||.++..+....++..-+. .
T Consensus 271 ~Iy~~d~~~~~~~~Lt~-~~~-~~~~~~-~spDG~~i~f~s~~----~g~~~Iy~~d~~g~~~~~lt~~~~--------~ 335 (435)
T PRK05137 271 DIYTMDLRSGTTTRLTD-SPA-IDTSPS-YSPDGSQIVFESDR----SGSPQLYVMNADGSNPRRISFGGG--------R 335 (435)
T ss_pred eEEEEECCCCceEEccC-CCC-ccCcee-EcCCCCEEEEEECC----CCCCeEEEEECCCCCeEEeecCCC--------c
Confidence 47777887766555421 111 101111 122454 4433321 123468888875555555543211 1
Q ss_pred cceEEEEecCCEEEEEEecCCCceEEEEECCCCceEEC
Q 038464 341 KVDINCVAAGHQIFICFNSAELFSYVLCDLVTNEWVEL 378 (404)
Q Consensus 341 ~~~~~~~~~~~~i~v~~~~~~~~~~~~yd~~~~~w~~~ 378 (404)
...+.....|+.|++.........+.++|++++..+.+
T Consensus 336 ~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~l 373 (435)
T PRK05137 336 YSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERIL 373 (435)
T ss_pred ccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEec
Confidence 11122223456665433222335788888877665544
No 114
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=37.26 E-value=66 Score=18.89 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=17.4
Q ss_pred EEecCceEEEEeCCCeEEEEcCCC
Q 038464 110 VAASGGLVCFRTASGKFIVSNPVT 133 (404)
Q Consensus 110 ~~s~~Glv~~~~~~~~~~v~NP~t 133 (404)
.+..+|.|++......++.+|+.|
T Consensus 17 ~~v~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 17 PAVAGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp -EECTSEEEEE-TTSEEEEEETT-
T ss_pred CEEECCEEEEEcCCCEEEEEeCCC
Confidence 466788888887778899998865
No 115
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=32.55 E-value=1.6e+02 Score=22.39 Aligned_cols=42 Identities=12% Similarity=0.120 Sum_probs=27.1
Q ss_pred CCeEEEEcCCCC-CeeeCCCCCCCCCCCceeEEEEEecCCCCCceEEEEEec
Q 038464 123 SGKFIVSNPVTG-SSRELPPLDADTENQSLHAIVMTTSSKNPSNYKLVLVYG 173 (404)
Q Consensus 123 ~~~~~v~NP~t~-~w~~lP~~~~~~~~~~~~~~~~~g~~~~~~~~kv~~~~g 173 (404)
...+.++||.|+ .|....+-. ..+.+ =+++....|+|+.+.+
T Consensus 10 rA~V~~yd~~tKk~WvPs~~~~--------~~V~~-y~~~~~ntfRIi~~~~ 52 (111)
T cd01206 10 RAHVFQIDPKTKKNWIPASKHA--------VTVSY-FYDSTRNVYRIISVGG 52 (111)
T ss_pred eeEEEEECCCCcceeEeCCCCc--------eeEEE-EecCCCcEEEEEEecC
Confidence 346889999986 897554321 12323 3466667899998754
No 116
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=31.62 E-value=66 Score=23.41 Aligned_cols=18 Identities=22% Similarity=0.390 Sum_probs=14.3
Q ss_pred CeEEEEcCCCCCeeeCCC
Q 038464 124 GKFIVSNPVTGSSRELPP 141 (404)
Q Consensus 124 ~~~~v~NP~t~~w~~lP~ 141 (404)
.+++.|||.|++...|-.
T Consensus 37 GRll~ydp~t~~~~vl~~ 54 (89)
T PF03088_consen 37 GRLLRYDPSTKETTVLLD 54 (89)
T ss_dssp EEEEEEETTTTEEEEEEE
T ss_pred cCEEEEECCCCeEEEehh
Confidence 478999999999876543
No 117
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=31.59 E-value=2.9e+02 Score=27.74 Aligned_cols=15 Identities=27% Similarity=0.290 Sum_probs=12.2
Q ss_pred CCeEEEEecCCCcee
Q 038464 260 CGTIVACNLTQKSFT 274 (404)
Q Consensus 260 ~~~i~~fD~~~~~w~ 274 (404)
...|..|+++.+.|-
T Consensus 154 g~evYRlNLEqGrfL 168 (703)
T KOG2321|consen 154 GSEVYRLNLEQGRFL 168 (703)
T ss_pred CcceEEEEccccccc
Confidence 347999999998876
No 118
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=30.57 E-value=2.3e+02 Score=28.70 Aligned_cols=65 Identities=22% Similarity=0.304 Sum_probs=37.2
Q ss_pred ceEEEEeccCCeEEEEecCCCceee----ccccCCccccccceeEeeCCeEEEEEeeeccceeeEEEEEEeCC
Q 038464 251 EEIVYFLNSCGTIVACNLTQKSFTE----YPRLLPVFSEYSIDVVECRGELLVVVLSEFLESASLRVWRFDQD 319 (404)
Q Consensus 251 ~~~~y~~~~~~~i~~fD~~~~~w~~----i~~~~p~~~~~~~~lv~~~g~L~~v~~~~~~~~~~~~vw~l~~~ 319 (404)
++.+|+-+..+.|.-||.+...+.. +..++-. ...-+.|.-..|+..+|...+ ...+.+|.++..
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH-~nAifDl~wapge~~lVsasG---DsT~r~Wdvk~s 132 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAH-KNAIFDLKWAPGESLLVSASG---DSTIRPWDVKTS 132 (720)
T ss_pred cceEEEecCCCceeeecchhhhcchhhhhhcccccc-cceeEeeccCCCceeEEEccC---Cceeeeeeeccc
Confidence 4445555555678888888777761 1111111 111134444557777776554 467889988773
No 119
>PRK04792 tolB translocation protein TolB; Provisional
Probab=29.88 E-value=5.3e+02 Score=25.11 Aligned_cols=63 Identities=17% Similarity=0.132 Sum_probs=36.0
Q ss_pred CCeEEEEcCCCCCeeeCCCCCCCCCCCceeEEEEEecCCCCCceEEEEEecccCceEEEEEeCCCCceeeccc
Q 038464 123 SGKFIVSNPVTGSSRELPPLDADTENQSLHAIVMTTSSKNPSNYKLVLVYGELPKLSFKVYNSCLNCWEEETL 195 (404)
Q Consensus 123 ~~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~g~~~~~~~~kv~~~~g~~~~~~~~vy~~~~~~W~~~~~ 195 (404)
..+++++|+.+++...+...+ ... .+.+. . ++.-+|+..........+.++|.+++..+.+..
T Consensus 241 ~~~L~~~dl~tg~~~~lt~~~---g~~--~~~~w---S--PDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~ 303 (448)
T PRK04792 241 KAEIFVQDIYTQVREKVTSFP---GIN--GAPRF---S--PDGKKLALVLSKDGQPEIYVVDIATKALTRITR 303 (448)
T ss_pred CcEEEEEECCCCCeEEecCCC---CCc--CCeeE---C--CCCCEEEEEEeCCCCeEEEEEECCCCCeEECcc
Confidence 457999999998877665443 111 11111 1 223334443322334568888998888776654
No 120
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=29.26 E-value=4.5e+02 Score=24.13 Aligned_cols=175 Identities=14% Similarity=0.183 Sum_probs=68.5
Q ss_pred CCceeeccCCC-CCCC-eeEEEecCceEEEEeCCCeEEEEcCCCCCeeeCCCCCCCCCCCceeEEEEEecCCCCCceEEE
Q 038464 92 EKTWKELNFPN-SSPD-SIPVAASGGLVCFRTASGKFIVSNPVTGSSRELPPLDADTENQSLHAIVMTTSSKNPSNYKLV 169 (404)
Q Consensus 92 ~~~w~~l~~p~-~~~~-~~~~~s~~Glv~~~~~~~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~g~~~~~~~~kv~ 169 (404)
.++|.+++++. .+.. +.+.+...+.+.+.+....++.-.=--+.|+.+.... ......+.. ..+.+++
T Consensus 90 G~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G~iy~T~DgG~tW~~~~~~~----~gs~~~~~r------~~dG~~v 159 (302)
T PF14870_consen 90 GKTWERVPLSSKLPGSPFGITALGDGSAELAGDRGAIYRTTDGGKTWQAVVSET----SGSINDITR------SSDGRYV 159 (302)
T ss_dssp TSS-EE----TT-SS-EEEEEEEETTEEEEEETT--EEEESSTTSSEEEEE-S--------EEEEEE-------TTS-EE
T ss_pred CCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCCCcEEEeCCCCCCeeEcccCC----cceeEeEEE------CCCCcEE
Confidence 35788876542 1212 2223334455555544555555555556788765433 111111111 1245566
Q ss_pred EEecccCceEEEEEeCCCCceeecccccccccccccccccCCccccCCeEEEeecCCceeeecccCCCcccccceeeecC
Q 038464 170 LVYGELPKLSFKVYNSCLNCWEEETLLLSRKSEQALEVDSIDHHDDEDAVYFLSKAGNVVATNMQRSPSKQYSSVITSKD 249 (404)
Q Consensus 170 ~~~g~~~~~~~~vy~~~~~~W~~~~~~~p~~~~~~~~~~~~~~v~~~G~ly~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (404)
+++.. ..-....+.+...|......-+++ -..+ ...-+|.++.++. ++
T Consensus 160 avs~~--G~~~~s~~~G~~~w~~~~r~~~~r-iq~~------gf~~~~~lw~~~~-Gg---------------------- 207 (302)
T PF14870_consen 160 AVSSR--GNFYSSWDPGQTTWQPHNRNSSRR-IQSM------GFSPDGNLWMLAR-GG---------------------- 207 (302)
T ss_dssp EEETT--SSEEEEE-TT-SS-EEEE--SSS--EEEE------EE-TTS-EEEEET-TT----------------------
T ss_pred EEECc--ccEEEEecCCCccceEEccCccce-ehhc------eecCCCCEEEEeC-Cc----------------------
Confidence 66421 234556677778898776521211 1111 1234566755542 22
Q ss_pred CceEEEEeccCCeEEEEe--cCCCceeeccccCCcccccc-ceeEee-CCeEEEEEeeeccceeeEEEEEEeCCCCCeEE
Q 038464 250 GEEIVYFLNSCGTIVACN--LTQKSFTEYPRLLPVFSEYS-IDVVEC-RGELLVVVLSEFLESASLRVWRFDQDNGFWHQ 325 (404)
Q Consensus 250 ~~~~~y~~~~~~~i~~fD--~~~~~w~~i~~~~p~~~~~~-~~lv~~-~g~L~~v~~~~~~~~~~~~vw~l~~~~~~W~~ 325 (404)
.|..=| -..+.|.+--.+..... +. ..++.. ++.++++++.. .+++=++..++|++
T Consensus 208 ------------~~~~s~~~~~~~~w~~~~~~~~~~~-~~~ld~a~~~~~~~wa~gg~G-------~l~~S~DgGktW~~ 267 (302)
T PF14870_consen 208 ------------QIQFSDDPDDGETWSEPIIPIKTNG-YGILDLAYRPPNEIWAVGGSG-------TLLVSTDGGKTWQK 267 (302)
T ss_dssp ------------EEEEEE-TTEEEEE---B-TTSS---S-EEEEEESSSS-EEEEESTT--------EEEESSTTSS-EE
T ss_pred ------------EEEEccCCCCccccccccCCcccCc-eeeEEEEecCCCCEEEEeCCc-------cEEEeCCCCccceE
Confidence 122222 34566776222222211 22 233333 57888877653 16666777889999
Q ss_pred ecc
Q 038464 326 IAA 328 (404)
Q Consensus 326 v~~ 328 (404)
...
T Consensus 268 ~~~ 270 (302)
T PF14870_consen 268 DRV 270 (302)
T ss_dssp -GG
T ss_pred Ccc
Confidence 753
No 121
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=28.39 E-value=1.3e+02 Score=23.35 Aligned_cols=31 Identities=10% Similarity=0.011 Sum_probs=21.2
Q ss_pred CCEEEEEEec--CCCceEEEEECCCCceEECCC
Q 038464 350 GHQIFICFNS--AELFSYVLCDLVTNEWVELPK 380 (404)
Q Consensus 350 ~~~i~v~~~~--~~~~~~~~yd~~~~~w~~~~~ 380 (404)
++-+|-.... .....++++|+++.+|+.++.
T Consensus 5 nGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~ 37 (129)
T PF08268_consen 5 NGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKL 37 (129)
T ss_pred CcEEEeEEEECCCCCcEEEEEEcCCceEEEEEe
Confidence 4555522222 345788999999999998865
No 122
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.68 E-value=4.4e+02 Score=23.45 Aligned_cols=72 Identities=13% Similarity=0.298 Sum_probs=37.8
Q ss_pred CeEEEEEeeeccceeeEEEEEEeCCCCCeEEe--ccCChhHHHHhccCcceEEEEecCCEEEEEEecCCCceEEEEECC-
Q 038464 295 GELLVVVLSEFLESASLRVWRFDQDNGFWHQI--AAMPPAMSHEFYGKKVDINCVAAGHQIFICFNSAELFSYVLCDLV- 371 (404)
Q Consensus 295 g~L~~v~~~~~~~~~~~~vw~l~~~~~~W~~v--~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~yd~~- 371 (404)
.+-+++...+ ...+-||.-+.+.+.|+.. ...|..+++ +.-.-.||.+-| . ++.+++-++-..
T Consensus 222 ~~s~iAS~Sq---Dg~viIwt~~~e~e~wk~tll~~f~~~~w~--------vSWS~sGn~LaV--s-~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 222 PKSTIASCSQ---DGTVIIWTKDEEYEPWKKTLLEEFPDVVWR--------VSWSLSGNILAV--S-GGDNKVTLWKENV 287 (299)
T ss_pred CceeeEEecC---CCcEEEEEecCccCcccccccccCCcceEE--------EEEeccccEEEE--e-cCCcEEEEEEeCC
Confidence 3556665544 3566799988877889863 344433221 111112333322 2 234455555444
Q ss_pred CCceEECCC
Q 038464 372 TNEWVELPK 380 (404)
Q Consensus 372 ~~~w~~~~~ 380 (404)
.++|++++.
T Consensus 288 ~Gkw~~v~~ 296 (299)
T KOG1332|consen 288 DGKWEEVGE 296 (299)
T ss_pred CCcEEEccc
Confidence 468988764
No 123
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=27.32 E-value=4.6e+02 Score=23.59 Aligned_cols=183 Identities=20% Similarity=0.236 Sum_probs=88.7
Q ss_pred eEEEEeCCCeEEEEcCCCCCeeeCCCCCCCCCCCceeEEEEEecCCCCCceEEEEEecccCceEEEEEeCCCCceeeccc
Q 038464 116 LVCFRTASGKFIVSNPVTGSSRELPPLDADTENQSLHAIVMTTSSKNPSNYKLVLVYGELPKLSFKVYNSCLNCWEEETL 195 (404)
Q Consensus 116 lv~~~~~~~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~g~~~~~~~~kv~~~~g~~~~~~~~vy~~~~~~W~~~~~ 195 (404)
++++..+++.+...||.++.-..=..+. .|......++| +| +++|..+....+--+..++..|.....
T Consensus 25 ~v~igSHs~~~~avd~~sG~~~We~ilg----~RiE~sa~vvg------df--VV~GCy~g~lYfl~~~tGs~~w~f~~~ 92 (354)
T KOG4649|consen 25 LVVIGSHSGIVIAVDPQSGNLIWEAILG----VRIECSAIVVG------DF--VVLGCYSGGLYFLCVKTGSQIWNFVIL 92 (354)
T ss_pred EEEEecCCceEEEecCCCCcEEeehhhC----ceeeeeeEEEC------CE--EEEEEccCcEEEEEecchhheeeeeeh
Confidence 4444444566777899999844333333 12112122344 56 333322222333334444567887654
Q ss_pred c-cccccccccccccCCccccCCeEEEeecCCceeeecccCCCcccccc--------eeeecCCceEEEEeccCCeEEEE
Q 038464 196 L-LSRKSEQALEVDSIDHHDDEDAVYFLSKAGNVVATNMQRSPSKQYSS--------VITSKDGEEIVYFLNSCGTIVAC 266 (404)
Q Consensus 196 ~-~p~~~~~~~~~~~~~~v~~~G~ly~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~y~~~~~~~i~~f 266 (404)
. ...++ ...+-.|.+|+-+..++..+.|+.+-. -.|.+ ....+-|...+|+..-.+.+++-
T Consensus 93 ~~vk~~a---------~~d~~~glIycgshd~~~yalD~~~~~-cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlav 162 (354)
T KOG4649|consen 93 ETVKVRA---------QCDFDGGLIYCGSHDGNFYALDPKTYG-CVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAV 162 (354)
T ss_pred hhhccce---------EEcCCCceEEEecCCCcEEEecccccc-eEEecccCCceeccceecCCCceEEEEeccceEEEE
Confidence 1 11110 112334455555555666676665311 11111 11223345688888888888888
Q ss_pred ecCCCceeecc---ccCCcccc-----ccceeEeeCCeEEEEEeeeccceeeEEEEEEeCCCCCeEEe
Q 038464 267 NLTQKSFTEYP---RLLPVFSE-----YSIDVVECRGELLVVVLSEFLESASLRVWRFDQDNGFWHQI 326 (404)
Q Consensus 267 D~~~~~w~~i~---~~~p~~~~-----~~~~lv~~~g~L~~v~~~~~~~~~~~~vw~l~~~~~~W~~v 326 (404)
..+......+- ..-|.+.. -...+...+|.|..+.. ..-.||+......-|..-
T Consensus 163 t~~~~~~~~~w~~~~~~PiF~splcv~~sv~i~~VdG~l~~f~~------sG~qvwr~~t~GpIf~~P 224 (354)
T KOG4649|consen 163 TKNPYSSTEFWAATRFGPIFASPLCVGSSVIITTVDGVLTSFDE------SGRQVWRPATKGPIFMEP 224 (354)
T ss_pred ccCCCCcceehhhhcCCccccCceeccceEEEEEeccEEEEEcC------CCcEEEeecCCCceeccc
Confidence 77655433320 11122211 12344556777766542 123488877765566653
No 124
>PF15408 PH_7: Pleckstrin homology domain
Probab=26.96 E-value=32 Score=24.58 Aligned_cols=25 Identities=36% Similarity=0.789 Sum_probs=19.7
Q ss_pred hhhhhHhhhcchhhhhccCChhHHH
Q 038464 39 TSTFFRLSSVCKRWKSVADSPSFKL 63 (404)
Q Consensus 39 ~~~l~r~~~Vck~W~~li~~~~F~~ 63 (404)
++.+...+.|||.|-.++.+|.|.-
T Consensus 76 ~~~FA~S~~~~~~Wi~~mN~~s~~~ 100 (104)
T PF15408_consen 76 VQCFASSKKVCQSWIQVMNSPSFRV 100 (104)
T ss_pred hhhhhhHHHHHHHHHHHhcChhhhh
Confidence 3455567889999999999988754
No 125
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.68 E-value=5.1e+02 Score=23.87 Aligned_cols=34 Identities=12% Similarity=0.211 Sum_probs=22.7
Q ss_pred EEEEECCCCceEECCCCCCCCceeEeeEeeeeccccc
Q 038464 365 YVLCDLVTNEWVELPKCSMNGEAVVFMSAFSFEPRIE 401 (404)
Q Consensus 365 ~~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~ 401 (404)
++-||-..++|.++..+|- -.+.+..+.|.|++.
T Consensus 203 Iye~~e~~rKw~kva~L~d---~~dpI~di~wAPn~G 236 (361)
T KOG2445|consen 203 IYEYNENGRKWLKVAELPD---HTDPIRDISWAPNIG 236 (361)
T ss_pred EEEecCCcceeeeehhcCC---CCCcceeeeeccccC
Confidence 3345555678999998871 224566788888764
No 126
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=26.57 E-value=1.3e+02 Score=17.40 Aligned_cols=16 Identities=13% Similarity=0.086 Sum_probs=11.0
Q ss_pred CCeEEEEecCCCc--eee
Q 038464 260 CGTIVACNLTQKS--FTE 275 (404)
Q Consensus 260 ~~~i~~fD~~~~~--w~~ 275 (404)
.+.+.++|.++++ |+.
T Consensus 9 ~g~l~AlD~~TG~~~W~~ 26 (38)
T PF01011_consen 9 DGYLYALDAKTGKVLWKF 26 (38)
T ss_dssp TSEEEEEETTTTSEEEEE
T ss_pred CCEEEEEECCCCCEEEee
Confidence 3478888887765 653
No 127
>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa.
Probab=26.13 E-value=3.1e+02 Score=21.20 Aligned_cols=43 Identities=14% Similarity=0.305 Sum_probs=31.0
Q ss_pred eeEeeCCeEEEEEeeec------cceeeEEEEEEeC---CCCCeEEeccCCh
Q 038464 289 DVVECRGELLVVVLSEF------LESASLRVWRFDQ---DNGFWHQIAAMPP 331 (404)
Q Consensus 289 ~lv~~~g~L~~v~~~~~------~~~~~~~vw~l~~---~~~~W~~v~~~~~ 331 (404)
.++..+|+|-.|..... .....+..|.+.. ....|++-..+..
T Consensus 47 ~v~v~~G~ikfV~i~~~~~~~~~~~~~~vt~Wtl~~~~~~~~~W~~d~~v~~ 98 (131)
T PF07762_consen 47 DVGVSGGKIKFVEIDGYEDDGPPSGGWTVTTWTLKDPEGSSWEWKKDCEVDL 98 (131)
T ss_pred eEEecCCCEEEEEEecccCCCcccCCcEEEEEEeccCCCCCCCEEEeEEEEh
Confidence 45668899877765432 2356789999988 5778999887763
No 128
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=25.79 E-value=6.4e+02 Score=24.67 Aligned_cols=89 Identities=10% Similarity=0.089 Sum_probs=45.3
Q ss_pred cCCCCCeeeCCCCCCCCCCCceeEEEEEecCCCCCceEEEEEecccCceEEEEEeCCCCceeeccccccccccccccccc
Q 038464 130 NPVTGSSRELPPLDADTENQSLHAIVMTTSSKNPSNYKLVLVYGELPKLSFKVYNSCLNCWEEETLLLSRKSEQALEVDS 209 (404)
Q Consensus 130 NP~t~~w~~lP~~~~~~~~~~~~~~~~~g~~~~~~~~kv~~~~g~~~~~~~~vy~~~~~~W~~~~~~~p~~~~~~~~~~~ 209 (404)
+|.+.-|++...++... + ...+..+.+.+. ..|..++.++ ..+.+|++.+.+=...-..+....+.
T Consensus 8 t~e~~~w~~~~~~~~~k-e--~~~vssl~fsp~-~P~d~aVt~S----~rvqly~~~~~~~~k~~srFk~~v~s------ 73 (487)
T KOG0310|consen 8 TPEIRYWRQETFPPVHK-E--HNSVSSLCFSPK-HPYDFAVTSS----VRVQLYSSVTRSVRKTFSRFKDVVYS------ 73 (487)
T ss_pred Cccchhhhhhccccccc-c--cCcceeEecCCC-CCCceEEecc----cEEEEEecchhhhhhhHHhhccceeE------
Confidence 55666787665555321 1 123444444443 2344444422 57999999875533211112211111
Q ss_pred CCccccCCeEEEeecC-Cceeeecc
Q 038464 210 IDHHDDEDAVYFLSKA-GNVVATNM 233 (404)
Q Consensus 210 ~~~v~~~G~ly~~~~~-~~~~~~~~ 233 (404)
...-.||.+...|+. |++..||.
T Consensus 74 -~~fR~DG~LlaaGD~sG~V~vfD~ 97 (487)
T KOG0310|consen 74 -VDFRSDGRLLAAGDESGHVKVFDM 97 (487)
T ss_pred -EEeecCCeEEEccCCcCcEEEecc
Confidence 112347999888764 66677774
No 129
>PTZ00421 coronin; Provisional
Probab=25.74 E-value=6.7e+02 Score=24.91 Aligned_cols=15 Identities=7% Similarity=-0.057 Sum_probs=10.8
Q ss_pred CceEEEEECCCCceE
Q 038464 362 LFSYVLCDLVTNEWV 376 (404)
Q Consensus 362 ~~~~~~yd~~~~~w~ 376 (404)
++.+.+||+.+++..
T Consensus 281 Dg~Iriwdl~~~~~~ 295 (493)
T PTZ00421 281 EGNIRCFELMNERLT 295 (493)
T ss_pred CCeEEEEEeeCCceE
Confidence 567788888877653
No 130
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=25.65 E-value=6.9e+02 Score=25.05 Aligned_cols=109 Identities=14% Similarity=0.157 Sum_probs=56.6
Q ss_pred ceEEEEeccCCeEEEEecCCC--ceeeccccCCccc-------cccceeEeeCCeEEEEEeeeccceeeEEEEEEeC--C
Q 038464 251 EEIVYFLNSCGTIVACNLTQK--SFTEYPRLLPVFS-------EYSIDVVECRGELLVVVLSEFLESASLRVWRFDQ--D 319 (404)
Q Consensus 251 ~~~~y~~~~~~~i~~fD~~~~--~w~~i~~~~p~~~-------~~~~~lv~~~g~L~~v~~~~~~~~~~~~vw~l~~--~ 319 (404)
+..+|+....+.|.++|.++. .|+.-.. .+... .....++..+|++|+.... . .++.+|. .
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~-~~~~~~~~~~~~~~~rg~av~~~~v~v~t~d-----g--~l~ALDa~TG 140 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPK-LPDDVIPVMCCDVVNRGVALYDGKVFFGTLD-----A--RLVALDAKTG 140 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCC-CCcccccccccccccccceEECCEEEEEcCC-----C--EEEEEECCCC
Confidence 347888776778999998864 4875321 11100 0012345567887764321 1 2666666 4
Q ss_pred CCCeEEec-cCChhHHHHhccCcceEEEEecCCEEEEEEecC---CCceEEEEECCCCc
Q 038464 320 NGFWHQIA-AMPPAMSHEFYGKKVDINCVAAGHQIFICFNSA---ELFSYVLCDLVTNE 374 (404)
Q Consensus 320 ~~~W~~v~-~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~---~~~~~~~yd~~~~~ 374 (404)
+..|..-. ..... + ....... ..++.||+...+. ..+.+.+||.++++
T Consensus 141 k~~W~~~~~~~~~~----~-~~tssP~--v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~ 192 (527)
T TIGR03075 141 KVVWSKKNGDYKAG----Y-TITAAPL--VVKGKVITGISGGEFGVRGYVTAYDAKTGK 192 (527)
T ss_pred CEEeeccccccccc----c-cccCCcE--EECCEEEEeecccccCCCcEEEEEECCCCc
Confidence 44577532 11100 0 0001111 2366776543221 24689999999975
No 131
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=24.50 E-value=6.5e+02 Score=24.37 Aligned_cols=116 Identities=12% Similarity=0.147 Sum_probs=0.0
Q ss_pred CCCCeEEEEcCCCCceeeeecCCCceeeccCCCCCCCeeEEEec-CceEEEEeC-CCeEEEEcCCCCCeeeCCCCCCCCC
Q 038464 70 SRDPWFLMVDHQLNHSIVFDSAEKTWKELNFPNSSPDSIPVAAS-GGLVCFRTA-SGKFIVSNPVTGSSRELPPLDADTE 147 (404)
Q Consensus 70 ~~~p~~~~~~~~~~~~~~~d~~~~~w~~l~~p~~~~~~~~~~s~-~Glv~~~~~-~~~~~v~NP~t~~w~~lP~~~~~~~ 147 (404)
+++..+|.....+...-.||..++. ..-.+|........++-. ||.-+...- ...+.+|| .++-+.++..+
T Consensus 356 HpDgLifgtgt~d~~vkiwdlks~~-~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwD--LRKl~n~kt~~---- 428 (506)
T KOG0289|consen 356 HPDGLIFGTGTPDGVVKIWDLKSQT-NVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWD--LRKLKNFKTIQ---- 428 (506)
T ss_pred cCCceEEeccCCCceEEEEEcCCcc-ccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEE--ehhhcccceee----
Q ss_pred CCceeEEEEEecCCCCCceEEEEEecccCceEEEEEeCCCCceeecccccc
Q 038464 148 NQSLHAIVMTTSSKNPSNYKLVLVYGELPKLSFKVYNSCLNCWEEETLLLS 198 (404)
Q Consensus 148 ~~~~~~~~~~g~~~~~~~~kv~~~~g~~~~~~~~vy~~~~~~W~~~~~~~p 198 (404)
......+..+.+|.+ ++.++++|. ...+.+|...+.+|+.+.. ++
T Consensus 429 l~~~~~v~s~~fD~S---Gt~L~~~g~--~l~Vy~~~k~~k~W~~~~~-~~ 473 (506)
T KOG0289|consen 429 LDEKKEVNSLSFDQS---GTYLGIAGS--DLQVYICKKKTKSWTEIKE-LA 473 (506)
T ss_pred ccccccceeEEEcCC---CCeEEeecc--eeEEEEEecccccceeeeh-hh
No 132
>PTZ00334 trans-sialidase; Provisional
Probab=24.50 E-value=2.7e+02 Score=29.32 Aligned_cols=66 Identities=14% Similarity=0.211 Sum_probs=42.5
Q ss_pred eEEEEecCCCceeeccccCCccccccceeEeeC-CeEEEEEeeeccceeeEEEEEEeCCCCCeEE-eccCCh
Q 038464 262 TIVACNLTQKSFTEYPRLLPVFSEYSIDVVECR-GELLVVVLSEFLESASLRVWRFDQDNGFWHQ-IAAMPP 331 (404)
Q Consensus 262 ~i~~fD~~~~~w~~i~~~~p~~~~~~~~lv~~~-g~L~~v~~~~~~~~~~~~vw~l~~~~~~W~~-v~~~~~ 331 (404)
.++-|-.....|..- ..++...-..+.+++.+ |+|.|+..+++. .-+||+-.+...+|++ +..++.
T Consensus 288 slIiYS~d~g~W~ls-~g~s~~gC~~P~I~EWe~gkLlM~t~C~dG---~RrVYES~DmG~tWtEAlGTLsr 355 (780)
T PTZ00334 288 SLIIYSSATESGNLS-KGMSADGCSDPSVVEWKEGKLMMMTACDDG---RRRVYESGDKGDSWTEALGTLSR 355 (780)
T ss_pred EEEEEecCCCCeEEc-CCCCCCCCCCCEEEEEcCCeEEEEEEeCCC---CEEEEEECCCCCChhhCCCccce
Confidence 345565556679643 33443321347899995 999999887632 2358888777778996 356653
No 133
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=23.78 E-value=4.9e+02 Score=23.61 Aligned_cols=86 Identities=19% Similarity=0.206 Sum_probs=41.2
Q ss_pred CCeEEEEEeee--ccc----eeeEEEEEEeCCCCCeEEeccCChhHHHHhccCcceEEEEe-cC----CEEEEEEecCCC
Q 038464 294 RGELLVVVLSE--FLE----SASLRVWRFDQDNGFWHQIAAMPPAMSHEFYGKKVDINCVA-AG----HQIFICFNSAEL 362 (404)
Q Consensus 294 ~g~L~~v~~~~--~~~----~~~~~vw~l~~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~-~~----~~i~v~~~~~~~ 362 (404)
.|+|.++.... ... ...-.++.+|..+++=.+...+|......- ..-.++.+-. .+ ..+|| .+...
T Consensus 11 ~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~-s~lndl~VD~~~~~~~~~~aYI--tD~~~ 87 (287)
T PF03022_consen 11 CGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPD-SFLNDLVVDVRDGNCDDGFAYI--TDSGG 87 (287)
T ss_dssp TSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TC-GGEEEEEEECTTTTS-SEEEEE--EETTT
T ss_pred CCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccc-cccceEEEEccCCCCcceEEEE--eCCCc
Confidence 56777775331 000 112345666666666666667765432200 0001222212 11 34554 44445
Q ss_pred ceEEEEECCCC-ceEECCCCC
Q 038464 363 FSYVLCDLVTN-EWVELPKCS 382 (404)
Q Consensus 363 ~~~~~yd~~~~-~w~~~~~~~ 382 (404)
..++|||+.++ .|+.....+
T Consensus 88 ~glIV~dl~~~~s~Rv~~~~~ 108 (287)
T PF03022_consen 88 PGLIVYDLATGKSWRVLHNSF 108 (287)
T ss_dssp CEEEEEETTTTEEEEEETCGC
T ss_pred CcEEEEEccCCcEEEEecCCc
Confidence 69999999996 466665533
No 134
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=23.00 E-value=4e+02 Score=24.72 Aligned_cols=38 Identities=21% Similarity=0.302 Sum_probs=25.5
Q ss_pred eEEEEecCCCceeeccccCCccccccceeEeeCCeEEEEEeee
Q 038464 262 TIVACNLTQKSFTEYPRLLPVFSEYSIDVVECRGELLVVVLSE 304 (404)
Q Consensus 262 ~i~~fD~~~~~w~~i~~~~p~~~~~~~~lv~~~g~L~~v~~~~ 304 (404)
.+..+|++++....+. ..|..- ..|.-. |.+.+|+...
T Consensus 224 ev~~vD~~~G~~e~Va-~vpG~~---rGL~f~-G~llvVgmSk 261 (335)
T TIGR03032 224 ELGYVDPQAGKFQPVA-FLPGFT---RGLAFA-GDFAFVGLSK 261 (335)
T ss_pred EEEEEcCCCCcEEEEE-ECCCCC---ccccee-CCEEEEEecc
Confidence 6888999988888774 345432 234444 8888887653
No 135
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=22.72 E-value=6.4e+02 Score=23.62 Aligned_cols=92 Identities=11% Similarity=0.072 Sum_probs=49.1
Q ss_pred eEEEEecCCCc--eeeccccCCccccccceeEeeCCeEEEEEeeeccceeeEEEEEEeC--CCCCeEEeccCChhHHHHh
Q 038464 262 TIVACNLTQKS--FTEYPRLLPVFSEYSIDVVECRGELLVVVLSEFLESASLRVWRFDQ--DNGFWHQIAAMPPAMSHEF 337 (404)
Q Consensus 262 ~i~~fD~~~~~--w~~i~~~~p~~~~~~~~lv~~~g~L~~v~~~~~~~~~~~~vw~l~~--~~~~W~~v~~~~~~~~~~~ 337 (404)
.|.++|+++.. |+.-... ........+...+|+||+-... . .++.||+ .+..|..-..-. +
T Consensus 79 ~i~A~d~~~g~~~W~~~~~~--~~~~~~~~~~~~~G~i~~g~~~----g---~~y~ld~~~G~~~W~~~~~~~------~ 143 (370)
T COG1520 79 NIFALNPDTGLVKWSYPLLG--AVAQLSGPILGSDGKIYVGSWD----G---KLYALDASTGTLVWSRNVGGS------P 143 (370)
T ss_pred cEEEEeCCCCcEEecccCcC--cceeccCceEEeCCeEEEeccc----c---eEEEEECCCCcEEEEEecCCC------e
Confidence 58888888765 8754221 0111223444448887753321 1 5788887 455688765441 0
Q ss_pred ccCcceEEEEecCCEEEEEEecCCCceEEEEECCCCc
Q 038464 338 YGKKVDINCVAAGHQIFICFNSAELFSYVLCDLVTNE 374 (404)
Q Consensus 338 ~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~yd~~~~~ 374 (404)
... -..+..++.+|+ .+ ..+.+.+.|.++++
T Consensus 144 -~~~--~~~v~~~~~v~~--~s-~~g~~~al~~~tG~ 174 (370)
T COG1520 144 -YYA--SPPVVGDGTVYV--GT-DDGHLYALNADTGT 174 (370)
T ss_pred -EEe--cCcEEcCcEEEE--ec-CCCeEEEEEccCCc
Confidence 000 012345666754 22 35678888888653
No 136
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=22.45 E-value=5.6e+02 Score=22.82 Aligned_cols=50 Identities=22% Similarity=0.393 Sum_probs=27.8
Q ss_pred eEEEEecCCCceeeccccCCccccccceeEe--eCCeEEEEEeeeccceeeEEEEEEeCC
Q 038464 262 TIVACNLTQKSFTEYPRLLPVFSEYSIDVVE--CRGELLVVVLSEFLESASLRVWRFDQD 319 (404)
Q Consensus 262 ~i~~fD~~~~~w~~i~~~~p~~~~~~~~lv~--~~g~L~~v~~~~~~~~~~~~vw~l~~~ 319 (404)
.+...|++++..+.. +..+.+|-+.++- .++.++ .+.+ ...++||..+..
T Consensus 137 ~~y~~dlE~G~i~r~---~rGHtDYvH~vv~R~~~~qil--sG~E---DGtvRvWd~kt~ 188 (325)
T KOG0649|consen 137 VIYQVDLEDGRIQRE---YRGHTDYVHSVVGRNANGQIL--SGAE---DGTVRVWDTKTQ 188 (325)
T ss_pred EEEEEEecCCEEEEE---EcCCcceeeeeeecccCccee--ecCC---CccEEEEecccc
Confidence 577788998887754 2222223233332 344443 2333 357889977664
No 137
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=22.31 E-value=3.5e+02 Score=27.59 Aligned_cols=35 Identities=23% Similarity=0.164 Sum_probs=29.1
Q ss_pred EEEecCceEEEEeCCCeEEEEcCCCCCeeeCCCCC
Q 038464 109 PVAASGGLVCFRTASGKFIVSNPVTGSSRELPPLD 143 (404)
Q Consensus 109 ~~~s~~Glv~~~~~~~~~~v~NP~t~~w~~lP~~~ 143 (404)
.+.++|.++++.+..+.++|||..|++.+.|++..
T Consensus 482 ~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~rl 516 (691)
T KOG2048|consen 482 VVSSDGNYIAAISTRGQIFVYNLETLESHLLKVRL 516 (691)
T ss_pred EEcCCCCEEEEEeccceEEEEEcccceeecchhcc
Confidence 45667888888888889999999999999888554
No 138
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=21.49 E-value=6.9e+02 Score=23.56 Aligned_cols=115 Identities=8% Similarity=-0.082 Sum_probs=0.0
Q ss_pred ceEEEEeccC-----CeEEEEecCCCceeeccccCCccccccceeEeeCCeEEEEEe---------eeccceeeEEEEEE
Q 038464 251 EEIVYFLNSC-----GTIVACNLTQKSFTEYPRLLPVFSEYSIDVVECRGELLVVVL---------SEFLESASLRVWRF 316 (404)
Q Consensus 251 ~~~~y~~~~~-----~~i~~fD~~~~~w~~i~~~~p~~~~~~~~lv~~~g~L~~v~~---------~~~~~~~~~~vw~l 316 (404)
...+|+.+.. +.|..+|.++.+-... .+....-...+..-+..||+... .+ ..+.||
T Consensus 12 ~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~---i~~G~~P~~~~spDg~~lyva~~~~~R~~~G~~~----d~V~v~-- 82 (352)
T TIGR02658 12 ARRVYVLDPGHFAATTQVYTIDGEAGRVLGM---TDGGFLPNPVVASDGSFFAHASTVYSRIARGKRT----DYVEVI-- 82 (352)
T ss_pred CCEEEEECCcccccCceEEEEECCCCEEEEE---EEccCCCceeECCCCCEEEEEeccccccccCCCC----CEEEEE--
Q ss_pred eCCCCCeEEeccCChhHHHHhccCcceEEEEecCCEEEEEEecCCCceEEEEECCCCce
Q 038464 317 DQDNGFWHQIAAMPPAMSHEFYGKKVDINCVAAGHQIFICFNSAELFSYVLCDLVTNEW 375 (404)
Q Consensus 317 ~~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~yd~~~~~w 375 (404)
|..+.+=+.--.+|..-..........+.....|..+||. .......+.+.|+.+++.
T Consensus 83 D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~-n~~p~~~V~VvD~~~~kv 140 (352)
T TIGR02658 83 DPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFY-QFSPSPAVGVVDLEGKAF 140 (352)
T ss_pred ECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEe-cCCCCCEEEEEECCCCcE
No 139
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=20.85 E-value=4.4e+02 Score=24.19 Aligned_cols=62 Identities=11% Similarity=0.109 Sum_probs=35.7
Q ss_pred CeEEEEecCCCce--eeccccCCcccc-----ccceeEeeCCeEEEEEeeeccceeeEEEEEEeC---CCCCeEEeccCC
Q 038464 261 GTIVACNLTQKSF--TEYPRLLPVFSE-----YSIDVVECRGELLVVVLSEFLESASLRVWRFDQ---DNGFWHQIAAMP 330 (404)
Q Consensus 261 ~~i~~fD~~~~~w--~~i~~~~p~~~~-----~~~~lv~~~g~L~~v~~~~~~~~~~~~vw~l~~---~~~~W~~v~~~~ 330 (404)
..|.+||+.+++| ...+......+. ..-.++...+|++.+.... +.+-++ +.....++.+++
T Consensus 173 ~~i~~~Dli~~~~~~e~f~~~~s~Dg~~~~~~~~G~~~s~ynR~faF~rGG--------i~vgnP~~~e~~~f~RlfDf~ 244 (339)
T PF09910_consen 173 SGIHCLDLISGKWVIESFDVSLSVDGGPVIRPELGAMASAYNRLFAFVRGG--------IFVGNPYNGEEFRFYRLFDFP 244 (339)
T ss_pred ceEEEEEccCCeEEEEecccccCCCCCceEeeccccEEEEeeeEEEEEecc--------EEEeCCCCCCceeEEEeeecc
Confidence 4799999999999 443322211111 0124566677888776544 555555 223455666666
No 140
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=20.18 E-value=5.9e+02 Score=22.23 Aligned_cols=62 Identities=18% Similarity=0.171 Sum_probs=32.4
Q ss_pred CceEEEEeC-CCeEEEEcCCCCCeee-CCCCCCCCCCCceeEEEEEecCCCCCceEEEEEecccCceEEEEEeCCCC
Q 038464 114 GGLVCFRTA-SGKFIVSNPVTGSSRE-LPPLDADTENQSLHAIVMTTSSKNPSNYKLVLVYGELPKLSFKVYNSCLN 188 (404)
Q Consensus 114 ~Glv~~~~~-~~~~~v~NP~t~~w~~-lP~~~~~~~~~~~~~~~~~g~~~~~~~~kv~~~~g~~~~~~~~vy~~~~~ 188 (404)
+..+++.+. ...+.+||+.+++... ++... . . ..+++ .+. ..++++..+. ...+.+||..++
T Consensus 42 g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~----~-~-~~~~~---~~~--g~~l~~~~~~--~~~l~~~d~~~~ 105 (300)
T TIGR03866 42 GKLLYVCASDSDTIQVIDLATGEVIGTLPSGP----D-P-ELFAL---HPN--GKILYIANED--DNLVTVIDIETR 105 (300)
T ss_pred CCEEEEEECCCCeEEEEECCCCcEEEeccCCC----C-c-cEEEE---CCC--CCEEEEEcCC--CCeEEEEECCCC
Confidence 344555443 5678999999887643 33221 1 1 11222 222 2344444322 247888998775
Done!